BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy689
(162 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 204 bits (519), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 104/126 (82%), Positives = 119/126 (94%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGG 91
+S+P++E+RILLLGLDNAGKTT+LK LASEDISHITPTQGFNIKSVQS+GFKLNVWDIGG
Sbjct: 11 KSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGG 70
Query: 92 QRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
QRKIRPYWR+YF+NTDILIYVIDSAD KRFEE+G EL ELL +EKL+ VP+L++ANKQDL
Sbjct: 71 QRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 130
Query: 152 LGAAPA 157
L AAPA
Sbjct: 131 LTAAPA 136
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 204 bits (519), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 104/126 (82%), Positives = 119/126 (94%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGG 91
+S+P++E+RILLLGLDNAGKTT+LK LASEDISHITPTQGFNIKSVQS+GFKLNVWDIGG
Sbjct: 10 KSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGG 69
Query: 92 QRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
QRKIRPYWR+YF+NTDILIYVIDSAD KRFEE+G EL ELL +EKL+ VP+L++ANKQDL
Sbjct: 70 QRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 129
Query: 152 LGAAPA 157
L AAPA
Sbjct: 130 LTAAPA 135
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 196 bits (499), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 102/120 (85%), Positives = 113/120 (94%)
Query: 38 ELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRP 97
E+RILLLGLDNAGKTT+LK LASEDISHITPTQGFNIKSVQS+GFKLNVWDIGGQRKIRP
Sbjct: 4 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRP 63
Query: 98 YWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157
YWR+YF+NTDILIYVIDSAD KRFEE+G EL ELL +EKL+ VP+L++ANKQDLL AAPA
Sbjct: 64 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 123
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 193 bits (490), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 101/120 (84%), Positives = 112/120 (93%)
Query: 38 ELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRP 97
E+RILLLGLDNAGKTT+LK LASEDISHITPTQGFNIKSVQS+GFKLNVWDIGG RKIRP
Sbjct: 4 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGLRKIRP 63
Query: 98 YWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157
YWR+YF+NTDILIYVIDSAD KRFEE+G EL ELL +EKL+ VP+L++ANKQDLL AAPA
Sbjct: 64 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 123
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 160 bits (406), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 73/122 (59%), Positives = 96/122 (78%)
Query: 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKI 95
E+ELR+L+LGLDNAGKTTILK EDI I+PT GFNIK+++ GFKLN+WD+GGQ+ +
Sbjct: 14 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 73
Query: 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155
R YWRNYF++TD LI+V+DSAD +R ++ EL LL +E+L G LL++ANKQDL GA
Sbjct: 74 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 133
Query: 156 PA 157
+
Sbjct: 134 SS 135
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 160 bits (405), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 72/122 (59%), Positives = 95/122 (77%)
Query: 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKI 95
E+ELR+L+LGLDNAGKTTILK ED+ I+PT GFNIK+++ GFKLN+WD+GGQ+ +
Sbjct: 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 75
Query: 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155
R YWRNYF++TD LI+V+DSAD +R ++ EL LL +E+L G LL++ANKQDL GA
Sbjct: 76 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135
Query: 156 PA 157
Sbjct: 136 SC 137
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 160 bits (405), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 72/119 (60%), Positives = 95/119 (79%)
Query: 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKI 95
E+ELR+L+LGLDNAGKTTILK ED+ I+PT GFNIK+++ GFKLN+WD+GGQ+ +
Sbjct: 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 75
Query: 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154
R YWRNYF++TD LI+V+DSAD +R ++ EL LL +E+L G LL++ANKQDL GA
Sbjct: 76 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 152 bits (384), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 69/119 (57%), Positives = 91/119 (76%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPY 98
LR+L+LGLDNAGKTTILK ED+ I+PT GFNIK+++ GFKLN+WD+GG + +R Y
Sbjct: 2 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSY 61
Query: 99 WRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157
WRNYF++TD LI+V+DSAD +R ++ EL LL +E+L G LL++ANKQDL GA
Sbjct: 62 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC 120
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 142 bits (359), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 64/108 (59%), Positives = 84/108 (77%)
Query: 47 DNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNT 106
DNAGKTTILK ED+ I+PT GFNIK+++ GFKLN+WD+GGQ+ +R YWRNYF++T
Sbjct: 27 DNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86
Query: 107 DILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154
D LI+V+DSAD +R ++ EL LL +E+L G LL++ANKQDL GA
Sbjct: 87 DGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 129 bits (324), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 82/121 (67%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR 96
KELRIL+LGLD AGKTTIL L ++ PT GFN++++ + KLNVWD+GGQ IR
Sbjct: 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIR 76
Query: 97 PYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156
PYWR Y+ +T +I+V+DS D R + ELH +L +E+L LLV+ANKQD GA
Sbjct: 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS 136
Query: 157 A 157
A
Sbjct: 137 A 137
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 127 bits (319), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 85/122 (69%)
Query: 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKI 95
+K++RIL++GLD AGKTTIL L +I PT GFN+++V+ + VWD+GGQ KI
Sbjct: 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKI 86
Query: 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155
RP WR+YF NT LI+V+DS D +R +ES EL ++L +++L LLV+ANKQD+ A
Sbjct: 87 RPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM 146
Query: 156 PA 157
P
Sbjct: 147 PV 148
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 85/127 (66%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGG 91
R +KE+RIL++GLD AGKTTIL L +I PT GFN+++V+ + VWD+GG
Sbjct: 14 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGG 73
Query: 92 QRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
Q KIRP WR+YF NT LI+V+DS D R E+ ELH +L++++L LLV+ANKQDL
Sbjct: 74 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 133
Query: 152 LGAAPAG 158
A A
Sbjct: 134 PNAMNAA 140
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 78/115 (67%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR 96
+E+RIL+LGLD AGKTTIL L ++ PT GFN+++V + K VWD+GGQ IR
Sbjct: 1 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIR 60
Query: 97 PYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
PYWR Y+ NTD +IYV+DS D R S EL +L +E+L L+V+ANKQD+
Sbjct: 61 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 115
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 87/127 (68%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGG 91
R +K++RIL++GLD AGKTTIL + ++ PT GFN+++V+ VWD+GG
Sbjct: 11 RLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGG 70
Query: 92 QRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
Q KIRP WR+Y+ NTD LI+V+DS D +R +++ ELH ++++E+L +LV+ANKQDL
Sbjct: 71 QDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDL 130
Query: 152 LGAAPAG 158
A A
Sbjct: 131 PNAMSAA 137
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 84/123 (68%)
Query: 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKI 95
+KE+RIL++GLD AGKTTIL L +I PT GFN+++V+ + VWD+GGQ KI
Sbjct: 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 222
Query: 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155
RP WR+YF NT LI+V+DS D +R E+ EL +L++++L LLV+ANKQDL A
Sbjct: 223 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 282
Query: 156 PAG 158
A
Sbjct: 283 NAA 285
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/134 (48%), Positives = 87/134 (64%), Gaps = 7/134 (5%)
Query: 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKI 95
+KE+RIL++GLD AGKTTIL L +I PT GFN+++V+ + VWD+GGQ KI
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155
RP WR+YF NT LI+V+DS D +R E+ EL +L++++L LLV+ANKQDL A
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 134
Query: 156 PA-------GYHSF 162
A G HS
Sbjct: 135 NAAEITDKLGLHSL 148
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/134 (48%), Positives = 87/134 (64%), Gaps = 7/134 (5%)
Query: 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKI 95
+KE+RIL++GLD AGKTTIL L +I PT GFN+++V+ + VWD+GGQ KI
Sbjct: 14 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 73
Query: 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155
RP WR+YF NT LI+V+DS D +R E+ EL +L++++L LLV+ANKQDL A
Sbjct: 74 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 133
Query: 156 PA-------GYHSF 162
A G HS
Sbjct: 134 NAAEITDKLGLHSL 147
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 79/115 (68%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR 96
KE+RIL+LGLD AGKTTIL L PT GFN+++V + K NVWD+GGQ KIR
Sbjct: 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 380
Query: 97 PYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
P WR+Y+ T LI+V+D AD R +E+ ELH +++D ++ +L++ANKQDL
Sbjct: 381 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 435
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 122 bits (307), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 79/115 (68%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR 96
KE+RIL+LGLD AGKTTIL L PT GFN+++V + K NVWD+GGQ KIR
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 71
Query: 97 PYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
P WR+Y+ T LI+V+D AD R +E+ ELH +++D ++ +L++ANKQDL
Sbjct: 72 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 122 bits (307), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 79/115 (68%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR 96
KE+RIL+LGLD AGKTTIL L PT GFN+++V + K NVWD+GGQ KIR
Sbjct: 11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 70
Query: 97 PYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
P WR+Y+ T LI+V+D AD R +E+ ELH +++D ++ +L++ANKQDL
Sbjct: 71 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 125
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 122 bits (306), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 77/115 (66%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR 96
+E+RIL+LGLD AGKTTIL L ++ PT GFN+++V + K VWD+GG IR
Sbjct: 3 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 62
Query: 97 PYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
PYWR Y+ NTD +IYV+DS D R S EL +L +E+L L+V+ANKQD+
Sbjct: 63 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 117
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 84/131 (64%), Gaps = 7/131 (5%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPY 98
+RIL++GLD AGKTTIL L +I PT GFN+++V+ + VWD+GGQ KIRP
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 99 WRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA- 157
WR+YF NT LI+V+DS D +R E+ EL +L++++L LLV+ANKQDL A A
Sbjct: 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120
Query: 158 ------GYHSF 162
G HS
Sbjct: 121 EITDKLGLHSL 131
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 119 bits (299), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 78/115 (67%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR 96
KE+RIL+LGLD AGKTTIL L PT GFN+++V + K NVWD+GG KIR
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIR 71
Query: 97 PYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
P WR+Y+ T LI+V+D AD R +E+ ELH +++D ++ +L++ANKQDL
Sbjct: 72 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 77/113 (68%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPY 98
+RIL+LGLD AGKTTIL L PT GFN+++V + K NVWD+GGQ KIRP
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 60
Query: 99 WRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
WR+Y+ T LI+V+D AD R +E+ ELH +++D ++ +L++ANKQDL
Sbjct: 61 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 113
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 77/113 (68%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPY 98
+RIL+LGLD AGKTTIL L PT GFN+++V + K NVWD+GGQ KIRP
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 60
Query: 99 WRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
WR+Y+ T LI+V+D AD R +E+ ELH +++D ++ +L++ANKQDL
Sbjct: 61 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 113
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%)
Query: 38 ELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRP 97
E+RIL+LGLD AGKTTIL L PT GFN+++V + K NVWD+GG KIRP
Sbjct: 3 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 62
Query: 98 YWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
WR+Y+ T LI+V+D AD R +E+ ELH +++D ++ +L++ANKQDL
Sbjct: 63 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 116
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 83/131 (63%), Gaps = 7/131 (5%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPY 98
+RIL++GLD AGKTTIL L +I PT GFN+++V+ + VWD+GG KIRP
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPL 62
Query: 99 WRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA- 157
WR+YF NT LI+V+DS D +R E+ EL +L++++L LLV+ANKQDL A A
Sbjct: 63 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 122
Query: 158 ------GYHSF 162
G HS
Sbjct: 123 EITDKLGLHSL 133
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%)
Query: 38 ELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRP 97
E+RIL+LGLD AGKTTIL L PT GFN+++V + K NVWD+GG KIRP
Sbjct: 2 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 61
Query: 98 YWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
WR+Y+ T LI+V+D AD R +E+ ELH +++D ++ +L++ANKQDL
Sbjct: 62 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 115
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 81/116 (69%)
Query: 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKI 95
+KE+RIL++GLD AGKT+IL L +I PT GFN+++V+ + VWD+GGQ KI
Sbjct: 15 KKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
RP WR+Y+ NT +I+V+DS D R E+ EL ++L+++++ LLV+ANK DL
Sbjct: 75 RPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDL 130
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 81/116 (69%)
Query: 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKI 95
+K++RIL++GLD AGKTTIL L +I PT GFN+++V+ + VWD+GGQ +I
Sbjct: 15 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRI 74
Query: 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
RP W++YF NT LI+V+DS D +R +E EL ++L ++L LL++ANKQDL
Sbjct: 75 RPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDL 130
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 75/115 (65%)
Query: 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYW 99
RIL LGLD AGKTTIL L PT GFN+++V + K NVWD+GGQ KIRP W
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 100 RNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154
R+Y+ T LI+V+D AD R +E+ ELH +++D + +L++ANKQDL A
Sbjct: 62 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDA 116
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 113 bits (283), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 80/122 (65%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR 96
KE+RIL++GLD AGKTT+L L ++ PT GFN+++VQ + VWD+GGQ +IR
Sbjct: 16 KEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIR 75
Query: 97 PYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156
WR+Y+ NT+ +I+VIDS D R E+ + +L++++L LV+ANKQDL A
Sbjct: 76 SLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMS 135
Query: 157 AG 158
A
Sbjct: 136 AA 137
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 113 bits (283), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 80/122 (65%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR 96
KE+RIL++GLD AGKTT+L L ++ PT GFN+++VQ + VWD+GGQ +IR
Sbjct: 16 KEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIR 75
Query: 97 PYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156
WR+Y+ NT+ +I+V+DS D R E+ + +L++++L LV+ANKQDL A
Sbjct: 76 SLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMS 135
Query: 157 AG 158
A
Sbjct: 136 AA 137
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 113 bits (283), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 78/122 (63%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR 96
KE+RIL++GLD AGKTT+L L ++ PT GFN++ VQ VWD+GGQ +IR
Sbjct: 16 KEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNISFTVWDVGGQDRIR 75
Query: 97 PYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156
WR+Y+ NT+ +I+V+DS D R E+ + +L++++L LV+ANKQDL A
Sbjct: 76 SLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEAMS 135
Query: 157 AG 158
A
Sbjct: 136 AA 137
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 82/121 (67%)
Query: 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRK 94
++++R+L+LGLDNAGKT+IL L D+ PT G N++++Q + VWD+GGQ
Sbjct: 19 ADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTG 78
Query: 95 IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154
+RPYWR YF +TD +IYV+DS D R + EL+ LL +++L LL++ANKQDL A
Sbjct: 79 VRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138
Query: 155 A 155
A
Sbjct: 139 A 139
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 78/120 (65%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPY 98
+RIL++GLD AGKTT+L L ++ PT GFN+++VQ + VWD+GGQ +IR
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSL 60
Query: 99 WRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAG 158
WR+Y+ NT+ +I+V+DS D R E+ + +L++++L LV+ANKQDL A A
Sbjct: 61 WRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAA 120
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 75/118 (63%)
Query: 33 SSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQ 92
S +E RIL+LGLD AGKTTIL L ++ PT GFN+++V + K VWD+GG
Sbjct: 2 SHXTREXRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGL 61
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQD 150
IRPYWR Y+ NTD +IYV+DS D R S EL L +E+L L+V+ANKQD
Sbjct: 62 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQD 119
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 75/122 (61%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR 96
+E +++++GLDNAGKTTIL ++ H +PT G N++ + + +WDIGGQ +R
Sbjct: 15 QEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLR 74
Query: 97 PYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156
W Y+ NT+ +I V+DS D +R + EL+ +L+ E L +L++ANKQD+ G
Sbjct: 75 SSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMT 134
Query: 157 AG 158
A
Sbjct: 135 AA 136
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 75/115 (65%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR 96
+E +++++GLDNAGKTTIL + ++ H +PT G N++ + + +WDIGGQ +R
Sbjct: 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR 79
Query: 97 PYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
W Y+ NT+ +I V+DS D +R + EL+++L+ E L LL++ANKQD+
Sbjct: 80 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 75/117 (64%)
Query: 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRK 94
+E +++++GLDNAGKTTIL + ++ H +PT G N++ + + +WDIGGQ
Sbjct: 19 SHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQES 78
Query: 95 IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
+R W Y+ NT+ +I V+DS D +R + EL+++L+ E L LL++ANKQD+
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 135
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 103 bits (256), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 75/115 (65%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR 96
+E +++++GLDNAGKTTIL + ++ H +PT G N++ + + +WDIGGQ +R
Sbjct: 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR 74
Query: 97 PYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
W Y+ NT+ +I V+DS D +R + EL+++L+ E L LL++ANKQD+
Sbjct: 75 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 103 bits (256), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 75/115 (65%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR 96
+E +++++GLDNAGKTTIL + ++ H +PT G N++ + + +WDIGGQ +R
Sbjct: 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR 74
Query: 97 PYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
W Y+ NT+ +I V+DS D +R + EL+++L+ E L LL++ANKQD+
Sbjct: 75 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKTLASEDISH-ITPTQGFNIKSVQSEGFKLNVWDIG 90
R S E E+ + L+GL +GKTT + +AS S + PT GFN++ V + +WDIG
Sbjct: 17 RGSKE-EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIG 75
Query: 91 GQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQD 150
GQ + R W Y + ++Y+ID+AD ++ E S ELH LL +L G+P+LV NK+D
Sbjct: 76 GQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRD 135
Query: 151 LLGA 154
L A
Sbjct: 136 LPNA 139
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKTLASEDISH-ITPTQGFNIKSVQSEGFKLNVWDIG 90
R S E E+ + L+GL +GKTT + +AS + + PT GFN++ + + +WDIG
Sbjct: 17 RGSKE-EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIG 75
Query: 91 GQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQD 150
GQ + R W Y ++Y++D+AD ++ E S ELH LL +L G+P+LV NK+D
Sbjct: 76 GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 135
Query: 151 LLGA 154
L GA
Sbjct: 136 LPGA 139
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Query: 36 EKELRILLLGLDNAGKTTILKTLASEDISH-ITPTQGFNIKSVQSEGFKLNVWDIGGQRK 94
++E+ + L+GL +GKTT + +AS + + PT GFN++ + + +WDIGGQ +
Sbjct: 29 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPR 88
Query: 95 IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154
R W Y ++Y++D+AD ++ E S ELH LL +L G+P+LV NK+DL GA
Sbjct: 89 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 148
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 9/129 (6%)
Query: 38 ELRILLLGLDNAGKTTILKTL--ASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKI 95
+L++++ GLDN+GKTTI+ + A HIT T G+N+++ + V+D+GG +K
Sbjct: 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKF 76
Query: 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDE----KLTG---VPLLVYANK 148
R W Y+DN D +I+V+DS+D R E+ +L E +L G VP L +ANK
Sbjct: 77 RGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANK 136
Query: 149 QDLLGAAPA 157
D GA A
Sbjct: 137 MDAAGAKTA 145
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 66/115 (57%)
Query: 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKI 95
+K +++ LGLDNAGKTT+L L + + PT + + G +D+GG +
Sbjct: 33 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQA 92
Query: 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQD 150
R W+NY + +++++D AD R ES EL+ L++DE ++ VP+L+ NK D
Sbjct: 93 RRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKID 147
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 72/125 (57%), Gaps = 4/125 (3%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDIS--HITPTQGFNIKSVQSEGFKLNVWDIGGQRK 94
KE+ +L LGLDN+GKTTI+ L + +I PT GF+I+ +S V+D+ GQ +
Sbjct: 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGR 79
Query: 95 IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLS--DEKLTGVPLLVYANKQDLL 152
R W +Y+ +I+VIDS+D R + EL LL+ D K +P+L +ANK DL
Sbjct: 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139
Query: 153 GAAPA 157
A +
Sbjct: 140 DAVTS 144
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 65/115 (56%)
Query: 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKI 95
+K +++ LGLDNAGKTT+L L + + PT + + G +D+GG +
Sbjct: 20 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA 79
Query: 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQD 150
R W+NY + +++++D AD +R ES EL L++DE + VP+L+ NK D
Sbjct: 80 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKID 134
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 65/115 (56%)
Query: 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKI 95
+K +++ LGLDNAGKTT+L L + + PT + + G +D+GG +
Sbjct: 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA 82
Query: 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQD 150
R W+NY + +++++D AD +R ES EL L++DE + VP+L+ NK D
Sbjct: 83 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKID 137
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 65/115 (56%)
Query: 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKI 95
+K +++ LGLDNAGKTT+L L + + PT + + G +D+GG +
Sbjct: 14 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGGIQA 73
Query: 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQD 150
R W+NY + +++++D AD +R ES EL L++DE + VP+L+ NK D
Sbjct: 74 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKID 128
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 67/111 (60%)
Query: 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYW 99
++L LGLDNAGKTT+L L ++ ++ + PT + + K +D+GG + R W
Sbjct: 3 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 62
Query: 100 RNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQD 150
++YF + +++++D+AD +RF+E+ EL L + +L VP ++ NK D
Sbjct: 63 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKID 113
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 68/114 (59%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR 96
K ++L LGLDNAGKTT+L L ++ ++ + PT + + K +D+GG + R
Sbjct: 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQAR 81
Query: 97 PYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQD 150
W++YF + +++++D+AD +RF+E+ EL L + +L VP ++ NK D
Sbjct: 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKID 135
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 34 SPEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQG--FNIKSVQSEGFK--LNVWD 88
S +K +I+L G GK++ L L + +I+ T G F +K++ +G + L +WD
Sbjct: 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWD 83
Query: 89 IGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANK 148
GQ + R ++YF D ++ + D K F E +++ D VP+++ NK
Sbjct: 84 TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIR-EWVDMIEDAAHETVPIMLVGNK 142
Query: 149 QDL 151
D+
Sbjct: 143 ADI 145
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 6/129 (4%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKTLAS---EDISHITPTQGFNIKSVQSEG--FKLNV 86
R S + +I+++G N GKT + + D + T F ++V +G K+ +
Sbjct: 14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQL 73
Query: 87 WDIGGQRKIR-PYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVY 145
WD GQ + R ++Y+ N +++V D ++ F + E +P ++
Sbjct: 74 WDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILV 133
Query: 146 ANKQDLLGA 154
NK DL A
Sbjct: 134 GNKCDLRSA 142
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 39 LRILLLGLDNAGKTTIL-----KTLASEDISHITPTQGFNIKSVQSEG--FKLNVWDIGG 91
++LL+G GK+ +L T ++ IS I F IK+V+ +G KL +WD G
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGV--DFKIKTVELDGKTVKLQIWDTAG 66
Query: 92 QRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
Q + R +Y+ + +I V D D + F L E+ T + LLV NK DL
Sbjct: 67 QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV-GNKCDL 125
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 39 LRILLLGLDNAGKTTIL-----KTLASEDISHITPTQGFNIKSVQSEG--FKLNVWDIGG 91
++LL+G GK+ +L T ++ IS I F IK+V+ +G KL +WD G
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGV--DFKIKTVELDGKTVKLQIWDTAG 66
Query: 92 QRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
Q + R +Y+ + +I V D D + F L E+ T + LLV NK DL
Sbjct: 67 QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV-GNKCDL 125
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDIS--HITPTQ-GFNIKSVQSEG--FKLNVWDIGGQR 93
++L++G GK+++L A S +IT F I++V+ G KL +WD GQ
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQD 150
+ R Y+ T +I V D + F LHE+ ++ V ++ NK D
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGNKND 124
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 39 LRILLLGLDNAGKTTIL-----KTLASEDISHITPTQGFNIKSVQSEG--FKLNVWDIGG 91
++LL+G GK+ +L T ++ IS I F IK+V+ +G KL +WD G
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGV--DFKIKTVELDGKTVKLQIWDTAG 79
Query: 92 QRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
Q + R +Y+ + +I V D D + F L E+ T + LLV NK DL
Sbjct: 80 QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV-GNKCDL 138
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 32 RSSPEKE--LRILLLGLDNAGKTTILKTLASEDI--SHI-TPTQGFNIKSVQSEG--FKL 84
R SPE + ++LL+G GK+ +L A + S+I T F I++++ +G KL
Sbjct: 17 RGSPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 76
Query: 85 NVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLT-GVPLL 143
+WD GQ + R +Y+ +I V D D + F L E+ D + V L
Sbjct: 77 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKL 134
Query: 144 VYANKQDL 151
+ NK DL
Sbjct: 135 LVGNKCDL 142
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDIS-HITPTQG--FNIKSVQ--SEGFKLNVWDIGG 91
+EL++ LLG GK++I+ + +I PT G F K+VQ +E K +WD G
Sbjct: 4 RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 92 QRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYA---NK 148
Q + R Y+ + I V D EE+ L + + + G P +V A NK
Sbjct: 64 QERFRALAPMYYRGSAAAIIVYDITK----EETFSTLKNWVRELRQHGPPSIVVAIAGNK 119
Query: 149 QDL 151
DL
Sbjct: 120 CDL 122
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 39 LRILLLGLDNAGKTTILKTLAS---EDISHITPTQGFNIKSVQSEG--FKLNVWDIGGQR 93
+I+++G N GKT + + D + T F ++V +G K+ +WD GQ
Sbjct: 30 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 94 KIR-PYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152
+ R ++Y+ N +++V D + F + E +P ++ NK DL
Sbjct: 90 RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 149
Query: 153 GA 154
A
Sbjct: 150 SA 151
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 34 SPEKELRILLLGLDNAGKTTILKTLASEDISHI-TPTQGFNIKS----VQSEGFKLNVWD 88
SP ++ +++ LG + GKT+++ + + T G + S ++ +L +WD
Sbjct: 2 SPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 61
Query: 89 IGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANK 148
GQ + R +Y ++ + V D +V F+++ + ++ + E+ + V +++ NK
Sbjct: 62 TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT-ERGSDVIIMLVGNK 120
Query: 149 QDL 151
DL
Sbjct: 121 TDL 123
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Query: 61 EDISH-ITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD-- 117
ED+ H T T G + + ++ D+GGQR R W ++F + D I+V A+
Sbjct: 139 EDLIHNRTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYD 198
Query: 118 --------VKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152
R ES ++ ++E L G L++ NK DL
Sbjct: 199 XKLYEDGNTSRLTESIAVFKDIXTNEFLKGAVKLIFLNKXDLF 241
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKTLASEDISH-ITPTQG--FNIKSVQS--EGFKLNV 86
R S +EL++ LLG GK++I+ + H I+PT G F K+V E K +
Sbjct: 17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLI 76
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTG---VPLL 143
WD GQ + Y+ + + V D ++S + L + + + K G + +
Sbjct: 77 WDTAGQERFHSLAPMYYRGSAAAVIVYDITK----QDSFYTLKKWVKELKEHGPENIVMA 132
Query: 144 VYANKQDL 151
+ NK DL
Sbjct: 133 IAGNKCDL 140
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKTLASEDIS--HITPTQG-FNIKSVQSEGFKLN--V 86
R S +++LLG GKT+++ + HIT Q F K + G ++N +
Sbjct: 14 RGSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAI 73
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGF---ELHELLSDEKLTGVPLL 143
WD GQ + Y+ +++ I V D D F++ EL ++L +E + L
Sbjct: 74 WDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE----ICLC 129
Query: 144 VYANKQDL 151
+ NK DL
Sbjct: 130 IVGNKIDL 137
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQG------FNIKSVQSEG--FKLNVWDIG 90
+I+L+G GKT +++ P QG F IK+V+ G KL +WD
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQ---GLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 83
Query: 91 GQRKIRPYWRNYFDNTDILIYVID 114
GQ + R ++Y+ + + LI D
Sbjct: 84 GQERFRSITQSYYRSANALILTYD 107
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDI--SHI-TPTQGFNIKSVQSEG--FKLNVWDIGGQR 93
++LL+G GK+ +L A + S+I T F I++++ +G KL +WD GQ
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLT-GVPLLVYANKQDLL 152
+ R +Y+ +I V D D + F L E+ D + V L+ NK DL
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLT 124
Query: 153 GAAPAGYHS 161
Y +
Sbjct: 125 TKKVVDYTT 133
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDI--SHI-TPTQGFNIKSVQSEG--FKLNVWDIGGQR 93
++LL+G GK+ +L A + S+I T F I++++ +G KL +WD GQ
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLT-GVPLLVYANKQDLL 152
+ R +Y+ +I V D D + F L E+ D + V L+ NK DL
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLT 124
Query: 153 GAAPAGYHS 161
Y +
Sbjct: 125 TKKVVDYTT 133
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 34 SPEKE--LRILLLGLDNAGKTTILKTLASEDIS-HITPTQGFNIK----SVQSEGFKLNV 86
+PE + ++LL+G GK+ +L A + + T G + K S++++ KL +
Sbjct: 3 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQI 62
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYA 146
WD GQ + R +Y+ +I V D D F+ + E + + V L+
Sbjct: 63 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQE-IDRYAMENVNKLLVG 121
Query: 147 NKQDLL 152
NK DL+
Sbjct: 122 NKCDLV 127
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDI--SHI-TPTQGFNIKSVQSEG--FKLNVWDIGGQR 93
++LL+G GK+ +L A + S+I T F I++++ +G KL +WD GQ
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLT-GVPLLVYANKQDL 151
+ R +Y+ +I V D D + F L E+ D + V L+ NK DL
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDL 133
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 34 SPEKELRILLLGLDNAGKTTILKTLASEDISHI-TPTQGFNIKS----VQSEGFKLNVWD 88
+P ++ +++ LG + GKT+++ + + T G + S ++ +L +WD
Sbjct: 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 69
Query: 89 IGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANK 148
GQ + R +Y ++ + + V D + F ++ + ++ + E+ + V +++ NK
Sbjct: 70 TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRT-ERGSDVIIMLVGNK 128
Query: 149 QDL 151
DL
Sbjct: 129 TDL 131
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDI--SHI-TPTQGFNIKSVQSEG--FKLNVWDIGGQR 93
++LL+G GK+ +L A + S+I T F I++++ +G KL +WD GQ
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLT-GVPLLVYANKQDL 151
+ R +Y+ +I V D D + F L E+ D + V L+ NK DL
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDL 150
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 12/126 (9%)
Query: 34 SPEKELRILLLGLDNAGKTTILKTLASEDIS-HITPTQG--FNIKSVQ--SEGFKLNVWD 88
S +EL++ LLG GK++I+ + +I PT G F K+VQ +E K +WD
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 89 IGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYA-- 146
G + R Y+ + I V D EE+ L + + + G P +V A
Sbjct: 62 TAGLERFRALAPMYYRGSAAAIIVYDITK----EETFSTLKNWVRELRQHGPPSIVVAIA 117
Query: 147 -NKQDL 151
NK DL
Sbjct: 118 GNKCDL 123
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 40 RILLLGLDNAGKTTILKTLASEDI--SHI-TPTQGFNIKSVQSEG--FKLNVWDIGGQRK 94
++LL+G GK+ +L A + S+I T F I++++ +G KL +WD GQ +
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 95 IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLT-GVPLLVYANKQDLLG 153
R +Y+ +I V D D + F L E+ D + V L+ NK DL
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTT 118
Query: 154 AAPAGYHS 161
Y +
Sbjct: 119 KKVVDYTT 126
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDI--SHI-TPTQGFNIKSVQSEG--FKLNVWDIGGQR 93
++LL+G GK+ +L A + S+I T F I++++ +G KL +WD GQ
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL 131
+ R +Y+ +I V D D + F L E+
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 106
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDI--SHI-TPTQGFNIKSVQSEG--FKLNVWDIGGQR 93
++LL+G GK +L A + S+I T F I++++ +G KL +WD GQ
Sbjct: 17 FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLT-GVPLLVYANKQDL 151
+ R +Y+ +I V D D + F L E+ D + V L+ NK DL
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDL 133
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDI--SHITPTQ-GFNIKSVQSEG--FKLNVWDIGGQR 93
++ILL+G GK+ +L + S IT F IK+V G KL +WD GQ
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFE--ESGFE-LHELLSDEKLTGVPLLVYANKQD 150
+ R Y+ +I V D D + F + F+ ++E +DE LL+ NK D
Sbjct: 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE----AQLLLVGNKSD 136
Query: 151 L 151
+
Sbjct: 137 M 137
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDI--SHITPTQ-GFNIKSVQSEG--FKLNVWDIGGQR 93
++ILL+G GK+ +L + S IT F IK+V G KL +WD GQ
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFE--ESGFE-LHELLSDEKLTGVPLLVYANKQD 150
+ R Y+ +I V D D + F + F+ ++E +DE LL+ NK D
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE----AQLLLVGNKSD 119
Query: 151 L 151
+
Sbjct: 120 M 120
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 68 PTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD---------- 117
PT+G + + + + D+GGQR R W FD+ +++++ S++
Sbjct: 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 246
Query: 118 VKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152
R ES ++++ + V ++++ NK DLL
Sbjct: 247 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL 281
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 68 PTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD---------- 117
PT+G + + + + D+GGQR R W FD+ +++++ S++
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 222
Query: 118 VKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152
R ES ++++ + V ++++ NK DLL
Sbjct: 223 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL 257
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDI--SHI-TPTQGFNIKSVQSEG--FKLNVWDIGGQR 93
++LL+G GK+ +L A + S+I T F I++++ +G KL +WD GQ
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLT-GVPLLVYANKQDL 151
+ R +Y+ +I V D D + + L E+ D + V L+ NK DL
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI--DRYASENVNKLLVGNKSDL 126
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 39.3 bits (90), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDI--SHITPTQ-GFNIKSVQSEG--FKLNVWDIGGQR 93
++ILL+G GK+ +L + S IT F IK+V G KL +WD GQ
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFE--ESGFE-LHELLSDEKLTGVPLLVYANKQD 150
+ R Y+ +I V D D + F + F+ ++E +DE LL+ NK D
Sbjct: 68 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE----AQLLLVGNKSD 123
Query: 151 L 151
+
Sbjct: 124 M 124
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDI--SHI-TPTQGFNIKSVQSEG--FKLNVWDIGGQR 93
++LL+G GK+ +L A + S+I T F I++++ +G KL +WD GQ
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLT-GVPLLVYANKQDL 151
+ R +Y+ +I V D D + + L E+ D + V L+ NK DL
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI--DRYASENVNKLLVGNKSDL 126
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 39 LRILLLGLDNAGKTTILKTLA----SEDISHITPTQ-GFNIKSVQSEGFKLNVWDIGGQR 93
+ L++G GK+ +L +D +H + G + +V + KL +WD GQ
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 94 KIRPYWRNYFDNT--DILIYVIDSADVKRFEESGFELHELLSDEKLTGVP---LLVYANK 148
+ R R+Y+ +L+Y I S E+ L L+D + P +++ NK
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITS------RETYNSLAAWLTDARTLASPNIVVILCGNK 139
Query: 149 QDL 151
+DL
Sbjct: 140 KDL 142
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDIS--HITPTQG-FNIKSVQSEGFKLN--VWDIGGQR 93
+++LLG GKT+++ + HIT Q F K + G ++N +WD GQ
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGF---ELHELLSDEKLTGVPLLVYANKQD 150
+ Y+ +++ I V D D F++ EL ++L +E + L + NK D
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE----ICLCIVGNKID 122
Query: 151 L 151
L
Sbjct: 123 L 123
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 38 ELRILLLGLDNAGKTTILKTLASEDISHI-TPTQGFNIKS----VQSEGFKLNVWDIGGQ 92
+ +++ LG + GKT+++ + + T G + S ++ +L +WD GQ
Sbjct: 1 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
+ R +Y ++ + + V D +V F+++ + ++ + E+ + V +++ NK DL
Sbjct: 61 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRT-ERGSDVIIMLVGNKTDL 118
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 69 TQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------V 118
T G Q + +++D+GGQR R W F++ +I+V+ S+
Sbjct: 190 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQT 249
Query: 119 KRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153
R +E+ + ++ L + ++++ NKQDLL
Sbjct: 250 NRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 284
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNV 86
R+LLLG +GK+TI+K + I H+ G + K+ + + K N+
Sbjct: 42 RLLLLGAGESGKSTIVKQMR---ILHVNGFNGDSEKATKVQDIKNNL 85
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 69 TQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------V 118
T G Q + +++D+GGQR R W F++ +I+V+ S+
Sbjct: 190 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQT 249
Query: 119 KRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153
R +E+ + ++ L + ++++ NKQDLL
Sbjct: 250 NRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 284
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNV 86
R+LLLG +GK+TI+K + I H+ G K+ + + K N+
Sbjct: 42 RLLLLGAGESGKSTIVKQMR---ILHVNGFNGDGEKATKVQDIKNNL 85
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 8/132 (6%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKTLASEDI---SHITPTQGFNIKSVQSEG--FKLNV 86
R S + +++L+G GK+ +L + S T F +S+Q +G K +
Sbjct: 14 RGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 73
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYA 146
WD GQ + R Y+ + V D A +E L E L D + + +++
Sbjct: 74 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVG 132
Query: 147 NKQDL--LGAAP 156
NK DL L A P
Sbjct: 133 NKSDLRHLRAVP 144
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 69 TQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------V 118
T G Q + +++D+GGQR R W F++ +I+V+ S+
Sbjct: 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQT 263
Query: 119 KRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153
R +E+ + ++ L + ++++ NKQDLL
Sbjct: 264 NRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 298
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 69 TQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------V 118
T G Q + +++D+GGQR R W F++ +I+V+ S+
Sbjct: 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQT 263
Query: 119 KRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153
R +E+ + ++ L + ++++ NKQDLL
Sbjct: 264 NRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 298
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 41 ILLLGLDNAGKTTILKTLASEDI--SHI-TPTQGFNIKSVQSEG--FKLNVWDIGGQRKI 95
+LL+G GK+ +L A + S+I T F I++++ +G KL +WD GQ +
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLT-GVPLLVYANKQDL 151
R +Y+ +I V D D + F L E+ D + V L+ NK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDL 115
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 69 TQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------V 118
T G Q + +++D+GGQR R W F++ +I+V+ S+
Sbjct: 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQT 263
Query: 119 KRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153
R +E+ + ++ L + ++++ NKQDLL
Sbjct: 264 NRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 298
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
Query: 40 RILLLGLDNAGKTTILKTLASEDI--SHITPTQ-GFNIKSVQSEG--FKLNVWDIGGQRK 94
+ILL+G GK+ +L + S IT F IK+V G KL +WD GQ +
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 95 IRPYWRNYFDNTDILIYVIDSADVKRFE--ESGFE-LHELLSDEKLTGVPLLVYANKQD 150
R Y+ +I V D D + F + F+ ++E +DE LL+ NK D
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDE----AQLLLVGNKSD 119
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 9/121 (7%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISH---ITPTQGFNIKSVQSEGFK---LNVWDIGGQ 92
L++++LG GKT+++ ++ S T F K V +G K + VWD GQ
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTG---VPLLVYANKQ 149
+ + ++ D + V D + FE E L + P ++ NK
Sbjct: 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128
Query: 150 D 150
D
Sbjct: 129 D 129
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDI--SHITPTQG--FNIKSVQSEG--FKLNVWDIGGQ 92
++LL+G GKT +L SED S T G F I++++ +G KL +WD GQ
Sbjct: 7 FKLLLIGDSGVGKTCVLFRF-SEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFE 122
+ R Y+ ++ V D + K F+
Sbjct: 66 ERFRTITTAYYRGAMGIMLVYDITNEKSFD 95
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
Query: 40 RILLLGLDNAGKTTILKTLASEDI--SHITPTQ-GFNIKSVQSEG--FKLNVWDIGGQRK 94
+ILL+G GK+ +L + S IT F IK+V G KL +WD GQ +
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 95 IRPYWRNYFDNTDILIYVIDSADVKRFE--ESGFE-LHELLSDEKLTGVPLLVYANKQD 150
R Y+ +I V D D + F + F+ ++E +DE LL+ NK D
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDE----AQLLLVGNKSD 119
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDI--SHITPTQG--FNIKSVQSEG--FKLNVWDIGGQ 92
++LL+G GKT +L SED S T G F I++++ +G KL +WD GQ
Sbjct: 9 FKLLLIGDSGVGKTCVLFRF-SEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFE 122
+ R Y+ ++ V D + K F+
Sbjct: 68 ERFRTITTAYYRGAMGIMLVYDITNEKSFD 97
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 68 PTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD---------- 117
PT+G + + ++D+GGQR R W F+ +I+ + +D
Sbjct: 166 PTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQ 225
Query: 118 VKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152
R ES + +++ T ++++ NK+DL
Sbjct: 226 TNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 260
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 39 LRILLLGLDNAGKTTILKTLA----SEDISHITPTQ-GFNIKSVQSEGFKLNVWDIGGQR 93
+ L++G GK+ +L +D +H + G I +V + KL +WD GQ
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 94 KIRPYWRNYFDNT--DILIYVIDSADVKRFEESGFELHELLSDEKLTG---VPLLVYANK 148
+ R R+Y+ +L+Y I S E+ L L+D ++ + +++ NK
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITS------RETYNALTNWLTDARMLASQNIVIILCGNK 124
Query: 149 QDL 151
+DL
Sbjct: 125 KDL 127
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 38 ELRILLLGLDNAGKTTILKTLASEDISHI-TPTQGFNIKS----VQSEGFKLNVWDIGGQ 92
+ +++ LG + GKT+++ + + T G + S ++ +L +WD GQ
Sbjct: 2 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 61
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
+ R +Y ++ + + V D ++ F+++ + ++ + E+ + V +++ NK DL
Sbjct: 62 ERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRT-ERGSDVIIMLVGNKTDL 119
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 39 LRILLLGLDNAGKTTILKTLA----SEDISHITPTQ-GFNIKSVQSEGFKLNVWDIGGQR 93
+ L++G GK+ +L +D +H + G I +V + KL +WD GQ
Sbjct: 12 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 94 KIRPYWRNYFDNT--DILIYVIDSADVKRFEESGFELHELLSDEKLTG---VPLLVYANK 148
+ R R+Y+ +L+Y I S E+ L L+D ++ + +++ NK
Sbjct: 72 RFRSVTRSYYRGAAGALLVYDITS------RETYNALTNWLTDARMLASQNIVIILCGNK 125
Query: 149 QDL 151
+DL
Sbjct: 126 KDL 128
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDI---SHITPTQGFNIKSVQSEG--FKLNVWDIGGQR 93
+++L+G GK+ +L + S T F +S+Q +G K +WD GQ
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL-- 151
+ R Y+ + V D A +E L E L D + + +++ NK DL
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRH 148
Query: 152 LGAAP 156
L A P
Sbjct: 149 LRAVP 153
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 32 RSSPEK---ELRILLLGLDNAGKTTILKTLASEDISHITPTQ---GFNIKSVQSEG--FK 83
R SP +L+++++G GKT++++ + + F IK+V+ G +
Sbjct: 17 RGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIR 76
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEE 123
L +WD GQ + Y+ + +I V D + F++
Sbjct: 77 LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDD 116
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 67 TPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD--------- 117
PT G + ++D+GGQR R W + F+ +I+ + +D
Sbjct: 178 VPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 118 -VKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152
+ R ES + +++ T ++++ NK+DL
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 273
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
+E+++LLLG +GK+TI+K +
Sbjct: 31 REVKLLLLGAGESGKSTIVKQM 52
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 7/125 (5%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKT-LASEDISHITPTQGFNIKSV----QSEGFKLNV 86
+ P+ + +++L+G GKTT +K L E PT G + + K NV
Sbjct: 4 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNV 63
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYA 146
WD GQ K Y+ I + D ++ +L+ +P+++
Sbjct: 64 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV--RVCENIPIVLCG 121
Query: 147 NKQDL 151
NK D+
Sbjct: 122 NKVDI 126
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDI---SHITPTQGFNIKSVQSEG--FKLNVWDIGGQR 93
+++L+G GK+ +L + S T F +S+Q +G K +WD GQ
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL-- 151
+ R Y+ + V D A +E L E L D + + +++ NK DL
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRH 124
Query: 152 LGAAP 156
L A P
Sbjct: 125 LRAVP 129
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 7/125 (5%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKT-LASEDISHITPTQGFNIKSV----QSEGFKLNV 86
+ P+ + +++L+G GKTT +K L E PT G + + K NV
Sbjct: 4 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNV 63
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYA 146
WD GQ K Y+ I + D ++ +L+ +P+++
Sbjct: 64 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV--RVCENIPIVLCG 121
Query: 147 NKQDL 151
NK D+
Sbjct: 122 NKVDI 126
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 86 VWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLSDE 135
++D+GGQR R W + F+ +I+ + +D + R ES + + +++
Sbjct: 200 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMHLFNSICNNK 259
Query: 136 KLTGVPLLVYANKQDLL 152
T ++++ NK+DL
Sbjct: 260 WFTDTSIILFLNKKDLF 276
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 68 PTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD---------- 117
PT+G + + + + D+GG R R W FD+ +++++ S++
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 222
Query: 118 VKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152
R ES ++++ + V ++++ NK DLL
Sbjct: 223 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL 257
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDIS-HITPTQG--FNIKSVQSEG--FKLNVWDIGGQR 93
L+IL++G GK+++L + + T G F +K++ +G KL +WD GQ
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 94 KIRPYWRNYFDNTDILIYVID 114
+ R +Y+ +I V D
Sbjct: 76 RFRTLTPSYYRGAQGVILVYD 96
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDIS--HITPT-QGFNIKSVQSEGFKLN--VWDIGGQR 93
+++LLG GKT+++ + HIT F K + G ++N +WD GQ
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGF---ELHELLSDEKLTGVPLLVYANKQD 150
+ Y+ +++ I V D D F++ EL ++L +E + L + NK D
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE----ICLCIVGNKID 122
Query: 151 L 151
L
Sbjct: 123 L 123
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 39 LRILLLGLDNAGKTTIL---KTLASEDISHITPTQGFNIKSVQSEG--FKLNVWDIGGQR 93
+++L+G + GKT ++ KT A + T F +K+++ +G KL +WD GQ
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 94 KIRPYWRNYF--DNTDILIYVI 113
+ R ++Y+ N IL Y I
Sbjct: 90 RFRTITQSYYRSANGAILAYDI 111
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 6/118 (5%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQ---GFNIKSVQ--SEGFKLNVWDIGGQR 93
+++L+G GKT +L + SH + T F+ ++V + K +WD G
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
+ R Y+ + V D + + L EL + T V +LV NK DL
Sbjct: 71 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV-GNKSDL 127
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIKSVQSEGFK------------ 83
+E+++ L+G AGKT++LK L E + T G N+ + Q+ K
Sbjct: 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECL 99
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115
+ WD GGQ + + + + + + ++DS
Sbjct: 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLLDS 131
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 6/118 (5%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQ---GFNIKSVQ--SEGFKLNVWDIGGQR 93
+++L+G GKT +L + SH + T F+ ++V + K +WD G
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
+ R Y+ + V D + + L EL + T V +LV NK DL
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV-GNKSDL 142
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDI---SHITPTQGFNIKSVQSEG---FKLNVWDIGGQ 92
+I+L+G GK+ +L ++ S T F KS+Q + K +WD GQ
Sbjct: 8 FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
+ R Y+ + V D FE L E L D + + +L+ NK DL
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKE-LRDNADSNIVILLVGNKSDL 125
>pdb|3LLU|A Chain A, Crystal Structure Of The Nucleotide-Binding Domain Of Ras-
Related Gtp-Binding Protein C
Length = 196
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 16/90 (17%)
Query: 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSV---------QSEGFKLNVWDIG 90
RILL+GL +GK++I K + + ++P + ++S S +WD
Sbjct: 22 RILLMGLRRSGKSSIQKVVFHK----MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFP 77
Query: 91 GQRKIRPYWRNY---FDNTDILIYVIDSAD 117
GQ +Y F T LIYVID+ D
Sbjct: 78 GQMDFFDPTFDYEMIFRGTGALIYVIDAQD 107
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 22/128 (17%)
Query: 41 ILLLGLDNAGKTTILKTLAS---EDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRP 97
+++ G N GK+T+LK L + E S+ T+G N+ + F+ + D G
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPI 229
Query: 98 YWRNYFDNTDIL---------IYVIDSADVKRFEESGFELHELLSD-EKLTG----VPLL 143
RN + IL IY+ D + E GF L E + E++ G +P L
Sbjct: 230 SERNEIEKQAILALRYLGNLIIYIFDPS-----EHCGFPLEEQIHLFEEVHGEFKDLPFL 284
Query: 144 VYANKQDL 151
V NK D+
Sbjct: 285 VVINKIDV 292
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 8/127 (6%)
Query: 33 SSPEKELRILLLGLDNAGKTTILKTLASEDIS-HITPTQG--FNIKSVQSEG---FKLNV 86
S ++L+I++LG +GKT++ A E T G F ++ + G L +
Sbjct: 1 GSHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQI 60
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFE--ESGFELHELLSDEKLTGVPLLV 144
WDIGGQ Y ++ V D + + FE E + + + +S+E T + +
Sbjct: 61 WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVAL 120
Query: 145 YANKQDL 151
NK DL
Sbjct: 121 VGNKIDL 127
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLS 133
++D+GGQR R W + F+ +I+ + +D + R ES + +
Sbjct: 169 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 228
Query: 134 DEKLTGVPLLVYANKQDLL 152
++ T ++++ NK+DL
Sbjct: 229 NKWFTDTSIILFLNKKDLF 247
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 33 SSPEKELRILLLGLDNAGKTTILKTL 58
S+ +E+++LLLG +GK+TI+K +
Sbjct: 1 SNAAREVKLLLLGAGESGKSTIVKQM 26
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLS 133
++D+GGQR R W + F+ +I+ + +D + R ES + +
Sbjct: 202 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 261
Query: 134 DEKLTGVPLLVYANKQDLL 152
++ T ++++ NK+DL
Sbjct: 262 NKWFTDTSIILFLNKKDLF 280
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
+E+++LLLG +GK+TI+K +
Sbjct: 38 REVKLLLLGAGESGKSTIVKQM 59
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLS 133
++D+GGQR R W + F+ +I+ + +D + R ES + +
Sbjct: 196 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 255
Query: 134 DEKLTGVPLLVYANKQDLL 152
++ T ++++ NK+DL
Sbjct: 256 NKWFTDTSIILFLNKKDLF 274
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
+E+++LLLG +GK+TI+K +
Sbjct: 32 REVKLLLLGAGESGKSTIVKQM 53
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLS 133
++D+GGQR R W + F+ +I+ + +D + R ES + +
Sbjct: 170 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 229
Query: 134 DEKLTGVPLLVYANKQDLL 152
++ T ++++ NK+DL
Sbjct: 230 NKWFTDTSIILFLNKKDLF 248
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
+E+++LLLG +GK+TI+K +
Sbjct: 6 REVKLLLLGARESGKSTIVKQM 27
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLS 133
++D+GGQR R W + F+ +I+ + +D + R ES + +
Sbjct: 167 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 226
Query: 134 DEKLTGVPLLVYANKQDLL 152
++ T ++++ NK+DL
Sbjct: 227 NKWFTDTSIILFLNKKDLF 245
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLS 133
++D+GGQR R W + F+ +I+ + +D + R ES + +
Sbjct: 167 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 226
Query: 134 DEKLTGVPLLVYANKQDLL 152
++ T ++++ NK+DL
Sbjct: 227 NKWFTDTSIILFLNKKDLF 245
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
+E+++LLLG +GK+TI+K +
Sbjct: 3 REVKLLLLGAGESGKSTIVKQM 24
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLS 133
++D+GGQR R W + F+ +I+ + +D + R ES + +
Sbjct: 164 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 223
Query: 134 DEKLTGVPLLVYANKQDLL 152
++ T ++++ NK+DL
Sbjct: 224 NKWFTDTSIILFLNKKDLF 242
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLS 133
++D+GGQR R W + F+ +I+ + +D + R ES + +
Sbjct: 166 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 225
Query: 134 DEKLTGVPLLVYANKQDLL 152
++ T ++++ NK+DL
Sbjct: 226 NKWFTDTSIILFLNKKDLF 244
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
+E+++LLLG +GK+TI+K +
Sbjct: 2 REVKLLLLGAGESGKSTIVKQM 23
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLS 133
++D+GGQR R W + F+ +I+ + +D + R ES + +
Sbjct: 198 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 257
Query: 134 DEKLTGVPLLVYANKQDLL 152
++ T ++++ NK+DL
Sbjct: 258 NKWFTDTSIILFLNKKDLF 276
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
+E+++LLLG +GK+TI+K +
Sbjct: 34 REVKLLLLGAGESGKSTIVKQM 55
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLS 133
++D+GGQR R W + F+ +I+ + +D + R ES + +
Sbjct: 165 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 224
Query: 134 DEKLTGVPLLVYANKQDLL 152
++ T ++++ NK+DL
Sbjct: 225 NKWFTDTSIILFLNKKDLF 243
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
+E+++LLLG +GK+TI+K +
Sbjct: 1 REVKLLLLGAGESGKSTIVKQM 22
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLS 133
++D+GGQR R W + F+ +I+ + +D + R ES + +
Sbjct: 165 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 224
Query: 134 DEKLTGVPLLVYANKQDLL 152
++ T ++++ NK+DL
Sbjct: 225 NKWFTDTSIILFLNKKDLF 243
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
+E+++LLLG +GK+TI+K +
Sbjct: 1 REVKLLLLGAGESGKSTIVKQM 22
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLS 133
++D+GGQR R W + F+ +I+ + +D + R ES + +
Sbjct: 195 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 254
Query: 134 DEKLTGVPLLVYANKQDLL 152
++ T ++++ NK+DL
Sbjct: 255 NKWFTDTSIILFLNKKDLF 273
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLS 133
++D+GGQR R W + F+ +I+ + +D + R ES + +
Sbjct: 195 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 254
Query: 134 DEKLTGVPLLVYANKQDLL 152
++ T ++++ NK+DL
Sbjct: 255 NKWFTDTSIILFLNKKDLF 273
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
+E+++LLLG +GK+TI+K +
Sbjct: 31 REVKLLLLGAGESGKSTIVKQM 52
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLS 133
++D+GGQR R W + F+ +I+ + +D + R ES + +
Sbjct: 170 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 229
Query: 134 DEKLTGVPLLVYANKQDLL 152
++ T ++++ NK+DL
Sbjct: 230 NKWFTDTSIILFLNKKDLF 248
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
+E+++LLLG +GK+TI+K +
Sbjct: 6 REVKLLLLGAGESGKSTIVKQM 27
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLS 133
++D+GGQR R W + F+ +I+ + +D + R ES + +
Sbjct: 172 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 231
Query: 134 DEKLTGVPLLVYANKQDLL 152
++ T ++++ NK+DL
Sbjct: 232 NKWFTDTSIILFLNKKDLF 250
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
+E+++LLLG +GK+TI+K +
Sbjct: 8 REVKLLLLGAGESGKSTIVKQM 29
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLS 133
++D+GGQR R W + F+ +I+ + +D + R ES + +
Sbjct: 171 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 230
Query: 134 DEKLTGVPLLVYANKQDLL 152
++ T ++++ NK+DL
Sbjct: 231 NKWFTDTSIILFLNKKDLF 249
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
+E+++LLLG +GK+TI+K +
Sbjct: 7 REVKLLLLGAGESGKSTIVKQM 28
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 40 RILLLGLDNAGKTT-ILKTLASEDISHITPTQGFNIKS----VQSEGFKLNVWDIGGQRK 94
+++LLG AGK++ +L+ + + + T G S V K +WD GQ +
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 95 IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYA---NKQDL 151
Y+ I V D + FE + + EL + G P +V A NK DL
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQEL----QAQGNPNMVMALAGNKSDL 129
Query: 152 LGA 154
L A
Sbjct: 130 LDA 132
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 12/122 (9%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDIS-HITPTQGFNI----KSVQSEGFKLNVWDIGGQR 93
++++LLG GK++I+ S D + + PT G ++ K +WD GQ
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGF---ELHELLSDEKLTGVPLLVYANKQD 150
+ Y+ N + V D + F ++ ELHE S + + + + NK D
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD----IIIALVGNKID 119
Query: 151 LL 152
L
Sbjct: 120 XL 121
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 13/121 (10%)
Query: 39 LRILLLGLDNAGKTTIL------KTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQ 92
+++L+G GKT +L LA IS + + V KL +WD GQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGF---ELHELLSDEKLTGVPLLVYANKQ 149
+ R Y+ + L+ + D + F+ E+HE + V L++ NK
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD----VALMLLGNKV 126
Query: 150 D 150
D
Sbjct: 127 D 127
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 40 RILLLGLDNAGKTTI-LKTLASEDISHITPTQGFNIKS---VQSEGFKLNVWDIGGQRKI 95
+++++G GK+ + L+ + E + PT+ + + + E ++++ D GQ
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
NYF + + + V +++ F + ++L ++ VP L+ NK DL
Sbjct: 76 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 86 VWDIGGQRKIRPYWRNYFDNTDILIYVI----------DSADVKRFEESGFELHELLSDE 135
++D+GGQR R W + F++ +I+ + + R ES + +++
Sbjct: 178 LFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDETTNRMHESLMLFDSICNNK 237
Query: 136 KLTGVPLLVYANKQDLLG 153
++++ NK+DL G
Sbjct: 238 FFIDTSIILFLNKKDLFG 255
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 8/43 (18%)
Query: 34 SPEKELRILLLGLDNAGKTTILKTL--------ASEDISHITP 68
S K++++LLLG +GK+TI+K + + ED+ P
Sbjct: 8 SAAKDVKLLLLGAGESGKSTIVKQMKIIHEDGFSGEDVKQYKP 50
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 40 RILLLGLDNAGKTTI-LKTLASEDISHITPTQGFNIKS---VQSEGFKLNVWDIGGQRKI 95
+++++G GK+ + L+ + E + PT+ + + + E ++++ D GQ
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
NYF + + + V +++ F + ++L ++ VP L+ NK DL
Sbjct: 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 135
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 40 RILLLGLDNAGKTTI-LKTLASEDISHITPTQGFNIKS---VQSEGFKLNVWDIGGQRKI 95
+++++G GK+ + L+ + E + PT+ + + + E ++++ D GQ
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
NYF + + + V +++ F + ++L ++ VP L+ NK DL
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 123
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDI---SHITPTQGFNIKSVQSEG--FKLNVWDIGGQR 93
+I+L+G GK+ +L + S T F ++++ EG K +WD GQ
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL-- 151
+ R Y+ + V D + +E L EL + V + + NK DL
Sbjct: 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD-DNVAVGLIGNKSDLAH 132
Query: 152 LGAAP 156
L A P
Sbjct: 133 LRAVP 137
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 7/125 (5%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKT-LASEDISHITPTQGFNIKSV----QSEGFKLNV 86
+ P+ + +++L+G GKTT +K L E T G + + K NV
Sbjct: 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNV 68
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYA 146
WD GQ K Y+ I + D ++ +L+ +P+++
Sbjct: 69 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV--RVCENIPIVLCG 126
Query: 147 NKQDL 151
NK D+
Sbjct: 127 NKVDI 131
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 86 VWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLSDE 135
++D+GGQR R W + F+ +I+ + +D + R ES + +++
Sbjct: 169 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 228
Query: 136 KLTGVPLLVYANKQDLL 152
T ++++ NK+DL
Sbjct: 229 WFTDTSIILFLNKKDLF 245
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 40 RILLLGLDNAGKTTI-LKTLASEDISHITPTQGFNIKS---VQSEGFKLNVWDIGGQRKI 95
+++++G GK+ + L+ + E + PT+ + + + E ++++ D GQ
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
NYF + + + V +++ F + ++L ++ VP L+ NK DL
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLS 133
++D+GGQR R W + F+ +I+ + +D + R ES + +
Sbjct: 195 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 254
Query: 134 DEKLTGVPLLVYANKQDLL 152
++ T ++++ NK+DL
Sbjct: 255 NKWFTETSIILFLNKKDLF 273
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
KE+++LLLG +GK+TI+K +
Sbjct: 31 KEVKLLLLGAGESGKSTIVKQM 52
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 40 RILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIKSVQ---SEG-FKLNVWDIGGQRK 94
+++ LG GKT+I+ + ++ T G + S EG +L +WD GQ +
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 95 IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
R +Y ++ I V D + + FE + + ++L +E+ V + + NK DL
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDIL-NERGKDVIIALVGNKTDL 118
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 12/121 (9%)
Query: 39 LRILLLGLDNAGKTTILKTLASE----DISHITPTQ-GFNIKSVQSEGFKLNVWDIGGQR 93
+ +++G GK+ +L + D H + G I V + KL +WD GQ
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVP---LLVYANKQD 150
+ R R+Y+ + V D + L L+D + P +++ NK D
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYN----HLSSWLTDARNLTNPNTVIILIGNKAD 131
Query: 151 L 151
L
Sbjct: 132 L 132
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLS 133
++D+GGQR R W + F+ +I+ + +D + R ES + +
Sbjct: 172 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 231
Query: 134 DEKLTGVPLLVYANKQDLL 152
++ T ++++ NK+DL
Sbjct: 232 NKWFTETSIILFLNKKDLF 250
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
KE+++LLLG +GK+TI+K +
Sbjct: 8 KEVKLLLLGAGESGKSTIVKQM 29
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLS 133
++D+GGQR R W + F+ +I+ + +D + R ES + +
Sbjct: 165 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 224
Query: 134 DEKLTGVPLLVYANKQDLL 152
++ T ++++ NK+DL
Sbjct: 225 NKWFTETSIILFLNKKDLF 243
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
KE+++LLLG +GK+TI+K +
Sbjct: 1 KEVKLLLLGAGESGKSTIVKQM 22
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 39 LRILLLGLDNAGKTTILKTLA----SEDISHITPTQ-GFNIKSVQSEGFKLNVWDIGGQR 93
+ L++G GK+ +L +D +H + G I +V + KL +WD G
Sbjct: 9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 94 KIRPYWRNYFDNT--DILIYVIDSADVKRFEESGFELHELLSDEKLTG---VPLLVYANK 148
+ R R+Y+ +L+Y I S E+ L L+D ++ + +++ NK
Sbjct: 69 RFRSVTRSYYRGAAGALLVYDITS------RETYNALTNWLTDARMLASQNIVIILCGNK 122
Query: 149 QDL 151
+DL
Sbjct: 123 KDL 125
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLS 133
++D+GGQR R W + F+ +I+ + +D + R ES + +
Sbjct: 172 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 231
Query: 134 DEKLTGVPLLVYANKQDLL 152
++ T ++++ NK+DL
Sbjct: 232 NKWFTETSIILFLNKKDLF 250
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
KE+++LLLG +GK+TI+K +
Sbjct: 8 KEVKLLLLGAGESGKSTIVKQM 29
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 46 LDNAGKTTILKTLASEDISHIT-PTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFD 104
LD + L T +D+ + PT G + + D+GGQR R W + F+
Sbjct: 152 LDRVADPSYLPT--QQDVLRVCVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFE 209
Query: 105 NTDILIY----------VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152
N +++ +++S + R EES +++ ++++ NK+DLL
Sbjct: 210 NVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL 267
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
+EL++LLLG +GK+T +K +
Sbjct: 26 RELKLLLLGTGESGKSTFIKQM 47
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 46 LDNAGKTTILKTLASEDISHI-TPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFD 104
LD + L T +D+ + PT G + + D+GGQR R W + F+
Sbjct: 158 LDRVADPSYLPT--QQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFE 215
Query: 105 NTDILIY----------VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152
N +++ +++S + R EES +++ ++++ NK+DLL
Sbjct: 216 NVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL 273
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
+EL++LLLG +GK+T +K +
Sbjct: 32 RELKLLLLGTGESGKSTFIKQM 53
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 46 LDNAGKTTILKTLASEDISHI-TPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFD 104
LD + L T +D+ + PT G + + D+GGQR R W + F+
Sbjct: 158 LDRVADPSYLPT--QQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFE 215
Query: 105 NTDILIY----------VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152
N +++ +++S + R EES +++ ++++ NK+DLL
Sbjct: 216 NVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL 273
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
+EL++LLLG +GK+T +K +
Sbjct: 32 RELKLLLLGTGESGKSTFIKQM 53
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 46 LDNAGKTTILKTLASEDISHI-TPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFD 104
LD + L T +D+ + PT G + + D+GGQR R W + F+
Sbjct: 132 LDRVADPSYLPT--QQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFE 189
Query: 105 NTDILIY----------VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152
N +++ +++S + R EES +++ ++++ NK+DLL
Sbjct: 190 NVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL 247
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 33 SSPEKELRILLLGLDNAGKTTILKTL 58
+ +EL++LLLG +GK+T +K +
Sbjct: 2 ADARRELKLLLLGTGESGKSTFIKQM 27
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 46 LDNAGKTTILKTLASEDISHI-TPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFD 104
LD + L T +D+ + PT G + + D+GGQR R W + F+
Sbjct: 160 LDRVADPSYLPT--QQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFE 217
Query: 105 NTDILIY----------VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152
N +++ +++S + R EES +++ ++++ NK+DLL
Sbjct: 218 NVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL 275
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
+EL++LLLG +GK+T +K +
Sbjct: 34 RELKLLLLGTGESGKSTFIKQM 55
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 88 DIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLSDEKL 137
D+GGQR R W FD +++++ S++ R ES +++++
Sbjct: 205 DVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRLVESMNIFETIVNNKLF 264
Query: 138 TGVPLLVYANKQDLL 152
V ++++ NK DLL
Sbjct: 265 FNVSIILFLNKMDLL 279
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 12/121 (9%)
Query: 39 LRILLLGLDNAGKTTILKTLASE----DISHITPTQ-GFNIKSVQSEGFKLNVWDIGGQR 93
+ +++G GK+ +L + D H + G I V + KL +WD GQ
Sbjct: 31 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVP---LLVYANKQD 150
+ R R+Y+ + V D + L L+D + P +++ NK D
Sbjct: 91 RFRAVTRSYYRGAAGALMVYDITRRSTYN----HLSSWLTDARNLTNPNTVIILIGNKAD 146
Query: 151 L 151
L
Sbjct: 147 L 147
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSE----GFKLNVWDIGG--- 91
+ +L+LG GK++ + +L E + ++P Q ++ V GF +N+ D G
Sbjct: 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVE 96
Query: 92 ----QRKIRPYWRNYFDN--TDILIYVIDSADVKRFEE 123
+ + + N D+L+YV D DV R +E
Sbjct: 97 AGYVNHQALELIKGFLVNRTIDVLLYV-DRLDVYRVDE 133
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSE----GFKLNVWDIGG--- 91
+ +L+LG GK++ + +L E + ++P Q ++ V GF +N+ D G
Sbjct: 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVE 96
Query: 92 ----QRKIRPYWRNYFDN--TDILIYVIDSADVKRFEE 123
+ + + N D+L+YV D DV R +E
Sbjct: 97 AGYVNHQALELIKGFLVNRTIDVLLYV-DRLDVYRVDE 133
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 33.9 bits (76), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 86 VWDIGGQRKIRPYWRNYFDNTDILIYV----------IDSADVKRFEESGFELHELLSDE 135
++D+GGQR R W + F+ +I++ ++ +V R ES + + +
Sbjct: 168 MFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHR 227
Query: 136 KLTGVPLLVYANKQDLLG 153
++++ NK+D+
Sbjct: 228 YFATTSIVLFLNKKDVFS 245
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 33.9 bits (76), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 8/121 (6%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISH---ITPTQGFNIKSVQSEG--FKLNVWDIGGQR 93
L++++LG GKT+++ ++ S+ T F K V + + +WD GQ
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELL---SDEKLTGVPLLVYANKQD 150
+ + ++ D + V D F+ E L S P +V NK D
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 151 L 151
L
Sbjct: 129 L 129
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDIS-HITPTQG--FNIKSV--QSEGFKLNVWDIGGQR 93
++LL+G + GKT+ L A + + T G F +K+V + KL +WD GQ
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRF 121
+ R Y+ + + D A+ + F
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESF 110
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 7/125 (5%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKT-LASEDISHITPTQGFNIKSV----QSEGFKLNV 86
+ P+ + +++L+G GKTT +K L E T G + + K NV
Sbjct: 4 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNV 63
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYA 146
WD GQ K Y+ I + D ++ +L+ +P+++
Sbjct: 64 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV--RVCENIPIVLCG 121
Query: 147 NKQDL 151
NK D+
Sbjct: 122 NKVDI 126
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 8/121 (6%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISH---ITPTQGFNIKSVQSEG--FKLNVWDIGGQR 93
L++++LG GKT+++ ++ S+ T F K V + + +WD GQ
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELL---SDEKLTGVPLLVYANKQD 150
+ + ++ D + V D F+ E L S P +V NK D
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 151 L 151
L
Sbjct: 129 L 129
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 7/125 (5%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKT-LASEDISHITPTQGFNIKSV----QSEGFKLNV 86
+ P+ + +++L+G GKTT +K L E T G + + K NV
Sbjct: 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNV 68
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYA 146
WD GQ K Y+ I + D ++ +L+ +P+++
Sbjct: 69 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV--RVCENIPIVLCG 126
Query: 147 NKQDL 151
NK D+
Sbjct: 127 NKVDI 131
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 7/125 (5%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKT-LASEDISHITPTQGFNIKSV----QSEGFKLNV 86
+ P+ + +++L+G GKTT +K L E T G + + K NV
Sbjct: 4 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNV 63
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYA 146
WD GQ K Y+ I + D ++ +L+ +P+++
Sbjct: 64 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV--RVCENIPIVLCG 121
Query: 147 NKQDL 151
NK D+
Sbjct: 122 NKVDI 126
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 7/125 (5%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKT-LASEDISHITPTQGFNIKSV----QSEGFKLNV 86
+ P+ + +++L+G GKTT +K L E T G + + K NV
Sbjct: 4 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNV 63
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYA 146
WD GQ K Y+ I + D ++ +L+ +P+++
Sbjct: 64 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV--RVCENIPIVLCG 121
Query: 147 NKQDL 151
NK D+
Sbjct: 122 NKVDI 126
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 7/125 (5%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKT-LASEDISHITPTQGFNIKSV----QSEGFKLNV 86
+ P+ + +++L+G GKTT +K L E T G + + K NV
Sbjct: 4 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNV 63
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYA 146
WD GQ K Y+ I + D ++ +L+ +P+++
Sbjct: 64 WDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV--RVCENIPIVLCG 121
Query: 147 NKQDL 151
NK D+
Sbjct: 122 NKVDI 126
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 33.5 bits (75), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 36 EKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIKSV---QSEGFKLNVWDIGG 91
+K L+I+++G GKT +L + +I + PT N V ++E F L++WD G
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 80
Query: 92 QR---KIRPYWRNYFDNTDILI 110
Q ++RP +Y D+ +L+
Sbjct: 81 QEEYDRLRPL--SYADSDVVLL 100
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 33.1 bits (74), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLSDEK 136
+D+GGQR R W + F+ +I+ + +D R ES + +++
Sbjct: 195 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEXNRXHESXKLFDSICNNKW 254
Query: 137 LTGVPLLVYANKQDLL 152
T ++++ NK+DL
Sbjct: 255 FTDTSIILFLNKKDLF 270
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 33.1 bits (74), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 36 EKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIKSV---QSEGFKLNVWDIGG 91
+K L+I+++G GKT +L + +I + PT N V ++E F L++WD G
Sbjct: 20 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 79
Query: 92 QR---KIRPYWRNYFDNTDILI 110
Q ++RP +Y D+ +L+
Sbjct: 80 QEEYDRLRPL--SYADSDVVLL 99
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 33.1 bits (74), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 41 ILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEG----FKLNVWDIGG----- 91
+ ++G N GK+TI +A E IS + T G + S + N+ D GG
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 85
Query: 92 ---QRKIRPYWRNYFDNTDILIYVID 114
+IR D D++I++++
Sbjct: 86 EPFLAQIRQQAEIAMDEADVIIFMVN 111
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 33.1 bits (74), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 63/123 (51%), Gaps = 19/123 (15%)
Query: 40 RILLLGLDNAGKTTILKTLASEDISHI-TPTQGFN-IKSVQSEG--FKLNVWDIGGQR-- 93
+++++G GKT +L + ++ + PT N + ++ +G +L +WD GQ
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 94 -KIRPYWRNYFDNTDILI--YVIDSAD-VKRFEESGF-ELHELLSDEKLTGVPLLVYANK 148
++RP + +TD+++ + +DS D ++ E E+ + VP+++ ANK
Sbjct: 87 DRLRPL---SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN-----VPIILVANK 138
Query: 149 QDL 151
+DL
Sbjct: 139 KDL 141
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 33.1 bits (74), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 7/125 (5%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKT-LASEDISHITPTQGFNIKSV----QSEGFKLNV 86
+ P+ + +++L+G GKTT +K L E T G + + K NV
Sbjct: 4 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNV 63
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYA 146
WD GQ K Y+ I + D ++ +L+ +P+++
Sbjct: 64 WDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV--RVCENIPIVLCG 121
Query: 147 NKQDL 151
NK D+
Sbjct: 122 NKVDI 126
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 32.7 bits (73), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 7/125 (5%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKT-LASEDISHITPTQGFNIKSV----QSEGFKLNV 86
+ P+ + +++L+G GKTT +K L E T G + + K NV
Sbjct: 4 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNV 63
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYA 146
WD GQ K Y+ I D ++ +L+ +P+++
Sbjct: 64 WDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLV--RVCENIPIVLCG 121
Query: 147 NKQDL 151
NK D+
Sbjct: 122 NKVDI 126
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 32.7 bits (73), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 20/127 (15%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSE----GFKLNVWDIGGQ 92
K I L+G N GK+TI L E++ +I G ++ + E G K V D+ G
Sbjct: 6 KSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 64
Query: 93 RKIRP------YWRNYFDN--TDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLV 144
+ R+Y N D+++ ++D+ ++R +L E+ G LL+
Sbjct: 65 YSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEM-------GANLLL 117
Query: 145 YANKQDL 151
NK DL
Sbjct: 118 ALNKMDL 124
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 32.7 bits (73), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDISH-ITPT--QGFNIK-SVQSEGFKLNVWDIGGQ 92
+ ++++L+G GKT++L A TPT + + + V+ + L++WD GQ
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 93 ---RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQ 149
++RP ++ + +L+ D F+ F + VP++V K
Sbjct: 93 DDYDRLRPL---FYPDASVLLLCFDVTSPNSFDNI-FNRWYPEVNHFCKKVPIIVVGCKT 148
Query: 150 DL 151
DL
Sbjct: 149 DL 150
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 32.7 bits (73), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 8/121 (6%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISH---ITPTQGFNIKSVQSEG--FKLNVWDIGGQR 93
L++++LG GKT+++ ++ S+ T F K V + + +WD GQ
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELL---SDEKLTGVPLLVYANKQD 150
+ + ++ D + V D F+ E L S P +V NK D
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 151 L 151
Sbjct: 129 F 129
>pdb|2Q3F|A Chain A, X-Ray Crystal Structure Of Putative Human Ras-Related Gtp
Binding D In Complex With Gmppnp
pdb|2Q3F|B Chain B, X-Ray Crystal Structure Of Putative Human Ras-Related Gtp
Binding D In Complex With Gmppnp
Length = 181
Score = 32.7 bits (73), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 36 EKELRILLLGLDNAGKTTILKTL----ASEDISHITPTQGFNIKSVQSEGF-KLNVWDIG 90
E + RILL GL +GK++I K + + + + T + V + F +WD
Sbjct: 2 EVKPRILLXGLRRSGKSSIQKVVFHKXSPNETLFLESTNKICREDVSNSSFVNFQIWDFP 61
Query: 91 GQRKIRPYWRNY---FDNTDILIYVIDSAD 117
GQ +Y F T LI+VIDS D
Sbjct: 62 GQIDFFDPTFDYEXIFRGTGALIFVIDSQD 91
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDIS-HITPTQG--FNIKSV--QSEGFKLNVWDIGGQR 93
+IL++G + GKT+ L A + + T G F +K++ + KL +WD GQ
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 94 KIRPYWRNYF 103
+ R Y+
Sbjct: 66 RYRTITTAYY 75
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 20/127 (15%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSE----GFKLNVWDIGGQ 92
K I L+G N GK+TI L E++ +I G ++ + E G K V D+ G
Sbjct: 2 KSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
Query: 93 RKIRP------YWRNYFDN--TDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLV 144
+ R+Y N D+++ ++D+ ++R +L E+ G LL+
Sbjct: 61 YSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEM-------GANLLL 113
Query: 145 YANKQDL 151
NK DL
Sbjct: 114 ALNKMDL 120
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 20/127 (15%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSE----GFKLNVWDIGGQ 92
K I L+G N GK+TI L E++ +I G ++ + E G K V D+ G
Sbjct: 2 KSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
Query: 93 RKIRP------YWRNYFDN--TDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLV 144
+ R+Y N D+++ ++D+ ++R +L E+ G LL+
Sbjct: 61 YSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEM-------GANLLL 113
Query: 145 YANKQDL 151
NK DL
Sbjct: 114 ALNKMDL 120
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDIS-HITPTQG--FNIKSV--QSEGFKLNVWDIGGQR 93
++L++G + GKT+ L A + + T G F +K+V + KL +WD GQ
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRF 121
+ R Y+ I + D + + F
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESF 111
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 8/121 (6%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQG--FNIKSVQSEG--FKLNVWDIGGQR 93
+I+LLG GK++++ + S + T G F K ++ +G + +WD GQ
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELL--SDEK-LTGVPLLVYANKQD 150
+ R ++ +D + D + F+ E + +D K P ++ NK D
Sbjct: 72 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTD 131
Query: 151 L 151
+
Sbjct: 132 I 132
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 41 ILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEG----FKLNVWDIGG----- 91
+ ++G N GK+TI +A E IS + T G + S + N+ D GG
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65
Query: 92 ---QRKIRPYWRNYFDNTDILIYVID 114
+IR D D++I+ ++
Sbjct: 66 EPFLAQIRQQAEIAXDEADVIIFXVN 91
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 40 RILLLGLDNAGKTTI-LKTLASEDISHITPTQGFNIKS---VQSEGFKLNVWDIGGQRKI 95
+++++G GK+ + L+ + E + PT+ + + + E ++++ D G
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
NYF + + + V +++ F + ++L ++ VP L+ NK DL
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 123
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSE----GFKLNVWDIGG 91
+ +L+LG GK++ + +L E + ++P Q ++ V GF +N+ D G
Sbjct: 36 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPG 92
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSE----GFKLNVWDIGG 91
+ +L+LG GK++ + +L E + ++P Q ++ V GF +N+ D G
Sbjct: 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPG 93
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 20/127 (15%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSE----GFKLNVWDIGGQ 92
K I L+G N GK+TI L E++ +I G ++ + E G K V D+ G
Sbjct: 3 KSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 61
Query: 93 RKIRP------YWRNYFDN--TDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLV 144
+ R+Y N D+++ ++D+ ++R +L E G LL+
Sbjct: 62 YSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLXE-------XGANLLL 114
Query: 145 YANKQDL 151
NK DL
Sbjct: 115 ALNKXDL 121
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 10/121 (8%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDIS----HITPTQGFNIKSVQSEG--FKLNVWDIGGQ 92
L+++LLG GK++++ + H + N + ++ +G L +WD GQ
Sbjct: 8 LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLN-RDLEVDGRFVTLQIWDTAGQ 66
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELL--SDEK-LTGVPLLVYANKQ 149
+ + ++ D + D + FE G E + +D K P +V NK
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 150 D 150
D
Sbjct: 127 D 127
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 17/124 (13%)
Query: 43 LLGLDNAGKTTILKTLASEDISHITP----TQGFNIKSVQ-SEGFKLNVWDIGG------ 91
L+G NAGK+++L + I P T N+ V+ SE + + DI G
Sbjct: 162 LVGYPNAGKSSLLAAMTRAH-PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGAS 220
Query: 92 -QRKIRPYWRNYFDNTDILIYVIDSAD--VKRFEESGFELHELLSDEKLTGVPLLVYANK 148
+ + + + T +L+YV+D+AD +K E E+ D L P LV NK
Sbjct: 221 EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAY--DPALLRRPSLVALNK 278
Query: 149 QDLL 152
DLL
Sbjct: 279 VDLL 282
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 77 VQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEK 136
V E +L +WD GQ + + Y+ + V + D + FE +++++
Sbjct: 49 VNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE-- 106
Query: 137 LTGVPLLVYANKQDLL 152
+ +P + NK DLL
Sbjct: 107 VGDIPTALVQNKIDLL 122
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 39 LRILLLGLDNAGKTTILKTLAS---EDISHITPTQGFNIKSVQSEG--FKLNVWDIGGQR 93
+ +++G GK+ +L + + +T F + V +G KL +WD GQ
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 94 KIRPYWRNYFDNT--DILIYVIDSADVKRFEESGFELHELLSDEKL---TGVPLLVYANK 148
R R+Y+ +L+Y D+ R E+ L L D + + + +++ NK
Sbjct: 82 SFRSITRSYYRGAAGALLVY-----DITR-RETFNHLTSWLEDARQHSSSNMVIMLIGNK 135
Query: 149 QDL 151
DL
Sbjct: 136 SDL 138
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 7/125 (5%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKT-LASEDISHITPTQGFNIKSV----QSEGFKLNV 86
+ P+ + +++L+G GKTT +K L E T G + + K NV
Sbjct: 6 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNV 65
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYA 146
WD G K Y+ I + D ++ +L+ +P+++
Sbjct: 66 WDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV--RVCENIPIVLCG 123
Query: 147 NKQDL 151
NK D+
Sbjct: 124 NKVDI 128
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 8/121 (6%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISH---ITPTQGFNIKSVQSEG--FKLNVWDIGGQR 93
L++++LG GKT+++ ++ S+ T F K V + + +WD G
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELL---SDEKLTGVPLLVYANKQD 150
+ + ++ D + V D F+ E L S P +V NK D
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 151 L 151
L
Sbjct: 129 L 129
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 7/125 (5%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKT-LASEDISHITPTQGFNIKSV----QSEGFKLNV 86
+ P+ + +++L+G GKTT +K L E T G + + K NV
Sbjct: 4 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNV 63
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYA 146
WD G K Y+ I + D ++ +L+ +P+++
Sbjct: 64 WDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV--RVCENIPIVLCG 121
Query: 147 NKQDL 151
NK D+
Sbjct: 122 NKVDI 126
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 7/119 (5%)
Query: 38 ELRILLLGLDNAGKTTILKT-LASEDISHITPTQGFNIKSV----QSEGFKLNVWDIGGQ 92
+ +++L+G GKTT +K L E T G + + K NVWD GQ
Sbjct: 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
K Y+ I + D ++ +L+ +P+++ NK D+
Sbjct: 63 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV--RVCENIPIVLCGNKVDI 119
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 7/122 (5%)
Query: 35 PEKELRILLLGLDNAGKTTILKT-LASEDISHITPTQGFNIKSV----QSEGFKLNVWDI 89
P+ + +++L+G GKTT +K L E T G + + K NVWD
Sbjct: 3 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 62
Query: 90 GGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQ 149
G K Y+ I + D ++ +L+ +P+++ NK
Sbjct: 63 AGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV--RVCENIPIVLCGNKV 120
Query: 150 DL 151
D+
Sbjct: 121 DI 122
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSE----GFKLNVWDIGGQR 93
LR++++G N GK+T+L L +ED + +T G + E G + D G R
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 302
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 60/131 (45%), Gaps = 21/131 (16%)
Query: 41 ILLLGLDNAGKTTILKTLASEDISHITPTQG------FNIKSVQSEG----------FKL 84
+ ++G N GK+T+L L +S I+P G +K++ +E ++
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 85 NVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLV 144
D+ G + + + D+++++ID+ + R + E+++ + K P++V
Sbjct: 73 KKSDVLGHSMVE-IAKQSLEEADVILFMIDATEGWRPRDE--EIYQ--NFIKPLNKPVIV 127
Query: 145 YANKQDLLGAA 155
NK D +G A
Sbjct: 128 VINKIDKIGPA 138
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 60/131 (45%), Gaps = 21/131 (16%)
Query: 41 ILLLGLDNAGKTTILKTLASEDISHITPTQG------FNIKSVQSEG----------FKL 84
+ ++G N GK+T+L L +S I+P G +K++ +E ++
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 85 NVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLV 144
D+ G + + + D+++++ID+ + R + E+++ + K P++V
Sbjct: 72 KKSDVLGHSMVE-IAKQSLEEADVILFMIDATEGWRPRDE--EIYQ--NFIKPLNKPVIV 126
Query: 145 YANKQDLLGAA 155
NK D +G A
Sbjct: 127 VINKIDKIGPA 137
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 39 LRILLLGLDNAGKTTILKTLAS---EDISHITPTQGFNIKSVQSEG--FKLNVWDIGGQR 93
+ +++G GK+ +L + + +T F + + +G KL +WD GQ
Sbjct: 11 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 94 KIRPYWRNYFDNT--DILIYVIDSADV 118
R R+Y+ +L+Y I D
Sbjct: 71 SFRSITRSYYRGAAGALLVYDITRRDT 97
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 27/132 (20%)
Query: 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSE-----GFKLNVWDIGGQRK 94
++LL+G +GK+++ + S + T G I S LN+WD GGQ
Sbjct: 8 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQ-- 65
Query: 95 IRPYWRNYFDN--------TDILIYVIDS------ADVKRFEESGFELHELLSDEKLTGV 140
+ NYF +LI+V D D++ F ++ +L + D K
Sbjct: 66 -DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK---- 120
Query: 141 PLLVYANKQDLL 152
+ V +K DL+
Sbjct: 121 -IFVLLHKMDLV 131
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSV----QSEGFKLNVWDIGG 91
L IL++G GK++ + ++ E + I+P Q + V GF LN+ D G
Sbjct: 40 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPG 96
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 29.3 bits (64), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 10/122 (8%)
Query: 39 LRILLLGLDNAGKTTILKTLASE----DISHITPTQGFNIKSVQSEG--FKLNVWDIGGQ 92
+++LLG GK++++ + + H + N K ++ +G + +WD GQ
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLN-KDLEVDGHFVTMQIWDTAGQ 68
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELL--SDEK-LTGVPLLVYANKQ 149
+ R ++ +D + D + F+ E + +D K P ++ NK
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 150 DL 151
D+
Sbjct: 129 DI 130
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 29.3 bits (64), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 39 LRILLLGLDNAGKTTIL----------KTLASEDISH-----ITPTQGFNIKSVQSEGFK 83
+++L LG GKTT L K + + I + QG N S ++
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLL 143
L +WD GQ + R +F + + + D + F + +L ++ ++
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 144 VYANKQDL 151
+ NK DL
Sbjct: 146 LIGNKADL 153
>pdb|2GED|A Chain A, Signal Recognition Particle Receptor Beta-subunit In
Nucleotide-free Dimerized Form
pdb|2GED|B Chain B, Signal Recognition Particle Receptor Beta-subunit In
Nucleotide-free Dimerized Form
Length = 193
Score = 29.3 bits (64), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 41 ILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWR 100
I++ G N+GKT++L L ++ + +Q + + +G + + D G K+R
Sbjct: 51 IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKLS 109
Query: 101 NYFDN----TDILIYVIDS-ADVKRFEESGFELHELLSDEKLT---GVPLLVYANKQDLL 152
+Y LI+++DS D K+ + L ++LS + + G+ +L+ NK +L
Sbjct: 110 DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 169
Query: 153 GAAP 156
A P
Sbjct: 170 TARP 173
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 29.3 bits (64), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 10/122 (8%)
Query: 39 LRILLLGLDNAGKTTILKTLASE----DISHITPTQGFNIKSVQSEG--FKLNVWDIGGQ 92
+++LLG GK++++ + + H + N K ++ +G + +WD GQ
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLN-KDLEVDGHFVTMQIWDTAGQ 66
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELL--SDEK-LTGVPLLVYANKQ 149
+ R ++ +D + D + F+ E + +D K P ++ NK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 150 DL 151
D+
Sbjct: 127 DI 128
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 5/117 (4%)
Query: 40 RILLLGLDNAGKTTI-LKTLASEDISHITPTQGFNIKS---VQSEGFKLNVWDIGGQRKI 95
+++++G GK+ + L+ + E + PT+ + + + E ++++ D G
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 96 RPYWRNYFDNTDILIYVIDSADVKRFEESG-FELHELLSDEKLTGVPLLVYANKQDL 151
NYF + + + V + + F + F L + +PLLV NK DL
Sbjct: 69 AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
>pdb|1NRJ|B Chain B, Signal Recognition Particle Receptor Beta-Subunit In
Complex With The Srx Domain From The Alpha-Subunit
Length = 218
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 41 ILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWR 100
I++ G N+GKT++L L ++ + +Q + + +G + + D G K+R
Sbjct: 15 IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKLS 73
Query: 101 NYFDN----TDILIYVIDS-ADVKRFEESGFELHELLSDEKLT---GVPLLVYANKQDLL 152
+Y LI+++DS D K+ + L ++LS + + G+ +L+ NK +L
Sbjct: 74 DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 133
Query: 153 GAAP 156
A P
Sbjct: 134 TARP 137
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 22/125 (17%)
Query: 43 LLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLN------VWDIGGQRKIR 96
++G N+GKT++ +L ++ T+ F S + +N V +G R I
Sbjct: 184 IVGYTNSGKTSLFNSLTG--LTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIP 241
Query: 97 PYWRNYFDNT-------DILIYVIDSADVKRFE----ESGFELHELLSDEKLTGVPLLVY 145
P + F T D LI VIDS + +S FE+ L + ++G P+LV
Sbjct: 242 PQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEI---LREIGVSGKPILVT 298
Query: 146 ANKQD 150
NK D
Sbjct: 299 LNKID 303
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 5/117 (4%)
Query: 40 RILLLGLDNAGKTTI-LKTLASEDISHITPTQGFNIKS---VQSEGFKLNVWDIGGQRKI 95
+++++G GK+ + L+ + E + PT+ + + + E ++++ D G
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 96 RPYWRNYFDNTDILIYVIDSADVKRFEESG-FELHELLSDEKLTGVPLLVYANKQDL 151
NYF + + + V + + F + F L + +PLLV NK DL
Sbjct: 65 AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 22/128 (17%)
Query: 41 ILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWR 100
+LL G GKT ++K +A+ T+ I+ SE + + G R +R +R
Sbjct: 209 VLLYGPPGTGKTMLVKAVANS-------TKAAFIRVNGSEFVHKYLGE--GPRMVRDVFR 259
Query: 101 NYFDNTDILIYV--IDSADVKRFE-ESGFE------LHELLSD----EKLTGVPLLVYAN 147
+N +I++ +DS KRF+ ++G + L ELL+ ++ T V +++ N
Sbjct: 260 LARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATN 319
Query: 148 KQDLLGAA 155
+ D L A
Sbjct: 320 RADTLDPA 327
>pdb|4ASI|A Chain A, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|B Chain B, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|C Chain C, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|D Chain D, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|E Chain E, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|F Chain F, Crystal Structure Of Human Acaca C-Terminal Domain
Length = 769
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 105 NTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154
N D +I A F +S F+ ++ + D G+PL+V+AN + G
Sbjct: 434 NLDSEAKIIQQAGQVWFPDSAFKTYQAIKDFNREGLPLMVFANWRGFSGG 483
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 38 ELRILLLGLDNAGKTTI-LKTLASEDISHITPTQGFNIKS---VQSEGFKLNVWDIGGQR 93
E +++++G D GK+ + ++ + + + PT + + + E L++ D GQ
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
+ Y + + V + K FE+ ++ + VP+++ NK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 3/122 (2%)
Query: 34 SPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKS---VQSEGFKLNVWDIG 90
S E ++LLLG GK+ + + + G V E L V+DI
Sbjct: 3 SDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIW 62
Query: 91 GQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQD 150
Q R + D + V D FE++ +L + VP+++ NK D
Sbjct: 63 EQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSD 122
Query: 151 LL 152
L+
Sbjct: 123 LV 124
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 3/122 (2%)
Query: 34 SPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKS---VQSEGFKLNVWDIG 90
S E ++LLLG GK+ + + + G V E L V+DI
Sbjct: 3 SDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIW 62
Query: 91 GQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQD 150
Q R + D + V D FE++ +L + VP+++ NK D
Sbjct: 63 EQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSD 122
Query: 151 LL 152
L+
Sbjct: 123 LV 124
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 26/145 (17%)
Query: 36 EKELRILLLGLDNAGKTTILK---------------TLASED----ISHITPTQGFNIKS 76
E +I+ G +GKTT LK +LA+ED P +I
Sbjct: 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLP---LDIGE 68
Query: 77 VQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD--VKRFEESGFELHELLSD 134
V+ + +++ + GQ + D +++V DSA ++ ES + E L++
Sbjct: 69 VKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAE 128
Query: 135 EKLT--GVPLLVYANKQDLLGAAPA 157
LT VP+++ NK+DL A P
Sbjct: 129 YGLTLDDVPIVIQVNKRDLPDALPV 153
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 21/28 (75%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDIS 64
+ +R L++G+ N GK+T++ LA ++I+
Sbjct: 119 RAIRALIIGIPNVGKSTLINRLAKKNIA 146
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 38 ELRILLLGLDNAGKTTI-LKTLASEDISHITPTQGFNIKS---VQSEGFKLNVWDIGGQR 93
E +++++G D GK+ + ++ + + + PT + + + E L++ D GQ
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
+ Y + + V + K FE+ ++ + VP+++ NK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 121
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSV----QSEGFKLNVWDIGG 91
L IL+ G GK++ + ++ E + I+P Q + V GF LN+ D G
Sbjct: 40 LTILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRSRAGFTLNIIDTPG 96
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 18/102 (17%)
Query: 33 SSPE--KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGF----KLNV 86
S PE +++ ++G N GK+T+ + +++ + ++P G V E F K
Sbjct: 173 SKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVF 232
Query: 87 WDIGGQR---KIRPY----WRNY-----FDNTDILIYVIDSA 116
D G R ++ P + NY + D+++ V+D+
Sbjct: 233 VDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDAT 274
>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs
Length = 504
Score = 28.1 bits (61), Expect = 2.4, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR 96
K+ I+ +GL +GKTT LA + +G+ + ++ F+ +D Q +
Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLA-----YYYQRKGWKTCLICADTFRAGAFDQLKQNATK 154
Query: 97 PYWRNYFDNTDILIYVIDSADVKRFEESGFEL 128
Y T++ +I S V++F+ FE+
Sbjct: 155 ARIPFYGSYTEMDPVIIASEGVEKFKNENFEI 186
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 20/142 (14%)
Query: 36 EKELRILLLGLDNAGKTTILKTLAS--------EDISHITPTQ--------GFNIKSVQS 79
E +I+ G +GKTT LK + S E +S T + +I V+
Sbjct: 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEXVSLATEDERTLFFDFLPLDIGEVKG 71
Query: 80 EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD--VKRFEESGFELHELLSDEKL 137
+ +++ + GQ + D +++V DSA ++ ES E L++ L
Sbjct: 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESXRNXRENLAEYGL 131
Query: 138 T--GVPLLVYANKQDLLGAAPA 157
T VP+++ NK+DL A P
Sbjct: 132 TLDDVPIVIQVNKRDLPDALPV 153
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 16/114 (14%)
Query: 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQS----EGFKLNVWDIG 90
P +++ L G N GKT++ L ++ G ++ + +G+ +N+ D+
Sbjct: 2 PLHMVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLP 60
Query: 91 GQRKI------RPYWRNYF--DNTDILIYVIDSADVKRFEESGFELHELLSDEK 136
G + R+Y + D++I V DS + E+S + L E+L EK
Sbjct: 61 GTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP---EQSLYLLLEILEMEK 111
>pdb|4H5B|A Chain A, Crystal Structure Of Dr_1245 From Deinococcus Radiodurans
pdb|4H5B|B Chain B, Crystal Structure Of Dr_1245 From Deinococcus Radiodurans
Length = 153
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 75 KSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD 117
K +Q + +L++ + GGQR IR WR + +L+ V D +
Sbjct: 13 KYLQEKEVQLDIEENGGQRFIRMGWRFEMGDAAVLVSVNDGPN 55
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 8/124 (6%)
Query: 36 EKELRILLLGLDNAGKTTILKTLASEDISHITP---TQGFNIKSVQSEGFKLNVWDIGGQ 92
E+ + ++G + GKTT+L + ++ TQ V K+ D G
Sbjct: 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGH 65
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152
TDI+I V+ +AD ++ E ++ K VP++V NK D
Sbjct: 66 EAFTTMRARGAQVTDIVILVV-AADDGVMPQTV----EAINHAKAANVPIIVAINKMDKP 120
Query: 153 GAAP 156
A P
Sbjct: 121 EANP 124
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 86 VWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFE 127
++D+GGQR R W + F+ +I+ A + ++++ FE
Sbjct: 187 LFDVGGQRNERRKWIHLFEGVTAVIF---CAAISEYDQTLFE 225
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 16/114 (14%)
Query: 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQS----EGFKLNVWDIG 90
P +++ L G N GKT++ L ++ G ++ + +G+ +N+ D+
Sbjct: 2 PLHMVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLP 60
Query: 91 GQRKI------RPYWRNYF--DNTDILIYVIDSADVKRFEESGFELHELLSDEK 136
G + R+Y + D++I V DS + E+S + L E+L EK
Sbjct: 61 GTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP---EQSLYLLLEILEMEK 111
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 6/119 (5%)
Query: 38 ELRILLLGLDNAGKTTILKTLAS---EDISHITPTQGFNIKSV--QSEGFKLNVWDIGGQ 92
+ +++LLG GK++++ + T F +SV K +WD GQ
Sbjct: 8 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQ 67
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
+ Y+ I V D + + F + + E L + + + + NK DL
Sbjct: 68 ERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKE-LQRQASPSIVIALAGNKADL 125
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQ 78
R+L++G+ N GK+TI+ L + S + G K +Q
Sbjct: 101 RVLIVGVPNTGKSTIINKLKGKRASSVGAQPGIT-KGIQ 138
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 40 RILLLGLDNAGKTTILKTLAS---EDISHITPTQGFNIKS-------VQSEGFKLNVWDI 89
++ ++G +GKTT+L+ L D+ + T G ++K + LNVWD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 90 GGQ 92
G+
Sbjct: 64 AGR 66
>pdb|1XXA|A Chain A, C-terminal Domain Of Escherichia Coli Arginine
Repressor/ L- Arginine Complex; Pb Derivative
pdb|1XXA|B Chain B, C-terminal Domain Of Escherichia Coli Arginine
Repressor/ L- Arginine Complex; Pb Derivative
pdb|1XXA|C Chain C, C-terminal Domain Of Escherichia Coli Arginine
Repressor/ L- Arginine Complex; Pb Derivative
pdb|1XXA|D Chain D, C-terminal Domain Of Escherichia Coli Arginine
Repressor/ L- Arginine Complex; Pb Derivative
pdb|1XXA|E Chain E, C-terminal Domain Of Escherichia Coli Arginine
Repressor/ L- Arginine Complex; Pb Derivative
pdb|1XXA|F Chain F, C-terminal Domain Of Escherichia Coli Arginine
Repressor/ L- Arginine Complex; Pb Derivative
pdb|1XXB|A Chain A, C-Terminal Domain Of Escherichia Coli Arginine Repressor
L-Arginine Complex
pdb|1XXB|B Chain B, C-Terminal Domain Of Escherichia Coli Arginine Repressor
L-Arginine Complex
pdb|1XXB|C Chain C, C-Terminal Domain Of Escherichia Coli Arginine Repressor
L-Arginine Complex
pdb|1XXB|D Chain D, C-Terminal Domain Of Escherichia Coli Arginine Repressor
L-Arginine Complex
pdb|1XXB|E Chain E, C-Terminal Domain Of Escherichia Coli Arginine Repressor
L-Arginine Complex
pdb|1XXB|F Chain F, C-Terminal Domain Of Escherichia Coli Arginine Repressor
L-Arginine Complex
pdb|1XXC|A Chain A, C-Terminal Domain Of Escherichia Coli Arginine Repressor
pdb|1XXC|B Chain B, C-Terminal Domain Of Escherichia Coli Arginine Repressor
pdb|1XXC|C Chain C, C-Terminal Domain Of Escherichia Coli Arginine Repressor
pdb|1XXC|D Chain D, C-Terminal Domain Of Escherichia Coli Arginine Repressor
pdb|1XXC|E Chain E, C-Terminal Domain Of Escherichia Coli Arginine Repressor
pdb|1XXC|F Chain F, C-Terminal Domain Of Escherichia Coli Arginine Repressor
Length = 78
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 46 LDNAGKTT-ILKTLASEDISHITPTQGFNIKSV 77
LD+ GK IL T+A +D TP GF +K +
Sbjct: 34 LDSLGKAEGILGTIAGDDTIFTTPANGFTVKDL 66
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 40 RILLLGLDNAGKTTILKTLAS---EDISHITPTQGFNIKS-------VQSEGFKLNVWDI 89
++ ++G +GKTT+L+ L D+ + T G ++K + LNVWD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 90 GGQ 92
G+
Sbjct: 62 AGR 64
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 3/116 (2%)
Query: 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKS---VQSEGFKLNVWDIGGQRKIR 96
++LLLG GK+ + + + G V E L V+DI Q R
Sbjct: 4 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 63
Query: 97 PYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152
+ D + V D FE++ +L + VP+++ NK DL+
Sbjct: 64 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 6/118 (5%)
Query: 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIK----SVQSEGFKLNVWDIGGQRKI 95
R++LLG GKT++ A + + G ++ +V E L V D K+
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 96 RPYW--RNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
W + + V AD FE + +L + VP+++ NK DL
Sbjct: 66 DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 34 SPEKELRILLLGLDNAGKTTILKTLASEDISH 65
+P+ + +LG + GKTT+LK LA E I +
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPN 52
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 39 LRILLLGLDNAGKTTIL----------KTLASEDISH-----ITPTQGFNIKSVQSEGFK 83
+++L LG GKTT L K + + I + TQG + S ++
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLL 143
L +WD G + R +F + + + D + F + +L ++ ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 144 VYANKQDL 151
+ NK DL
Sbjct: 132 LIGNKADL 139
>pdb|4ARZ|B Chain B, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 341
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 41 ILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFK-------LNVWDIGGQR 93
+LL+G+ GK++I K + ++ P ++S + + L V ++ GQ
Sbjct: 12 VLLMGVRRCGKSSICKVV----FHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQL 67
Query: 94 K-IRPYW--RNYFDNTDILIYVIDSAD 117
P + F + L+YVIDS D
Sbjct: 68 NYFEPSYDSERLFKSVGALVYVIDSQD 94
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 39 LRILLLGLDNAGKTTIL----------KTLASEDISH-----ITPTQGFNIKSVQSEGFK 83
+++L LG GKTT L K + + I + TQG + S ++
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLL 143
L +WD G + R +F + + + D + F + +L ++ ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 144 VYANKQDL 151
+ NK DL
Sbjct: 132 LIGNKADL 139
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human
G-Alpha-I1
Length = 354
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
+E+++LLLG +GK+TI+K +
Sbjct: 32 REVKLLLLGAGESGKSTIVKQM 53
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human
G-Alpha-I1
Length = 354
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
+E+++LLLG +GK+TI+K +
Sbjct: 32 REVKLLLLGAGESGKSTIVKQM 53
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
+E+++LLLG +GK+TI+K +
Sbjct: 31 REVKLLLLGAGESGKSTIVKQM 52
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
+E+++LLLG +GK+TI+K +
Sbjct: 31 REVKLLLLGAGESGKSTIVKQM 52
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 6/119 (5%)
Query: 38 ELRILLLGLDNAGKTTILKTLAS---EDISHITPTQGFNIKSV--QSEGFKLNVWDIGGQ 92
+ +++LLG GK++++ + T F ++V K +WD GQ
Sbjct: 7 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
+ Y+ I V D + + F + + E L + + + + NK DL
Sbjct: 67 ERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 124
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 6/119 (5%)
Query: 38 ELRILLLGLDNAGKTTILKTLAS---EDISHITPTQGFNIKSV--QSEGFKLNVWDIGGQ 92
+ +++LLG GK++++ + T F ++V K +WD GQ
Sbjct: 6 QFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
+ Y+ I V D + + F + + E L + + + + NK DL
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 123
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 31/78 (39%)
Query: 74 IKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLS 133
I SV +L++ D GQ + Y + V D + F E G ++L
Sbjct: 49 ICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILR 108
Query: 134 DEKLTGVPLLVYANKQDL 151
+ P+++ NK DL
Sbjct: 109 VKDRDDFPVVLVGNKADL 126
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 6/119 (5%)
Query: 38 ELRILLLGLDNAGKTTILKTLAS---EDISHITPTQGFNIKSV--QSEGFKLNVWDIGGQ 92
+ +++LLG GK++++ + T F ++V K +WD GQ
Sbjct: 6 QFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
+ Y+ I V D + + F + + E L + + + + NK DL
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 123
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 13/123 (10%)
Query: 38 ELRILLLGLDNAGKTTI-LKTLASEDISHITPTQGFNIKS---VQSEGFKLNVWD---IG 90
E+ + +LG AGK+ + +K L IS P S V + L V D +
Sbjct: 21 EVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLD 80
Query: 91 GQRKIRPY--WRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANK 148
R Y W + F +++Y +DS S EL L + E +P L+ NK
Sbjct: 81 TPRNCERYLNWAHAF----LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNK 136
Query: 149 QDL 151
D+
Sbjct: 137 LDM 139
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 6/119 (5%)
Query: 38 ELRILLLGLDNAGKTTILKTLAS---EDISHITPTQGFNIKSV--QSEGFKLNVWDIGGQ 92
+ +++LLG GK++++ + T F ++V K +WD GQ
Sbjct: 6 QFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
+ Y+ I V D + + F + + E L + + + + NK DL
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 123
>pdb|2AX4|A Chain A, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|B Chain B, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|C Chain C, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|D Chain D, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
Length = 198
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 13/109 (11%)
Query: 41 ILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQ-----RKI 95
+ L GL AGKTTI L +SH P + +V+ G N+ G R+I
Sbjct: 25 VWLTGLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVR-HGLNRNLGFSPGDREENIRRI 83
Query: 96 RPYWRNYFDNTDILI------YVIDSADVKRFEES-GFELHELLSDEKL 137
+ + D + I + D + ++ ES G E+ D L
Sbjct: 84 AEVAKLFADAGLVCITSFISPFAKDRENARKIHESAGLPFFEIFVDAPL 132
>pdb|3SVL|A Chain A, Structural Basis Of The Improvement Of Chrr - A
Multi-Purpose Enzyme
pdb|3SVL|B Chain B, Structural Basis Of The Improvement Of Chrr - A
Multi-Purpose Enzyme
Length = 193
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 132 LSDEKLTGVPLLVYANKQDLLGAAPAGYH 160
L D+ L G P+L+ + ++G A YH
Sbjct: 101 LPDQPLAGKPVLIQTSSMGVIGGARCQYH 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,597,966
Number of Sequences: 62578
Number of extensions: 176929
Number of successful extensions: 911
Number of sequences better than 100.0: 291
Number of HSP's better than 100.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 124
Number of HSP's that attempted gapping in prelim test: 657
Number of HSP's gapped (non-prelim): 337
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)