Query psy689
Match_columns 162
No_of_seqs 110 out of 1363
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 21:04:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 1.1E-28 2.3E-33 169.8 11.5 123 35-158 6-133 (205)
2 KOG0092|consensus 100.0 1.8E-28 3.9E-33 168.1 12.4 123 35-158 2-129 (200)
3 KOG0094|consensus 100.0 1.1E-27 2.5E-32 164.4 12.4 124 35-158 19-147 (221)
4 smart00177 ARF ARF-like small 100.0 1.7E-27 3.7E-32 166.4 13.5 121 36-156 11-131 (175)
5 cd04149 Arf6 Arf6 subfamily. 100.0 1.3E-27 2.8E-32 166.0 12.8 120 36-155 7-126 (168)
6 PLN00223 ADP-ribosylation fact 100.0 2.4E-27 5.3E-32 166.5 13.4 122 36-157 15-136 (181)
7 cd04150 Arf1_5_like Arf1-Arf5- 100.0 2.9E-27 6.2E-32 162.9 13.0 117 39-155 1-117 (159)
8 PTZ00133 ADP-ribosylation fact 99.9 4.4E-27 9.6E-32 165.3 13.4 121 36-156 15-135 (182)
9 cd04161 Arl2l1_Arl13_like Arl2 99.9 9.7E-27 2.1E-31 161.4 13.4 118 40-157 1-118 (167)
10 cd04154 Arl2 Arl2 subfamily. 99.9 1.4E-26 3.1E-31 161.3 13.5 121 35-155 11-131 (173)
11 cd04158 ARD1 ARD1 subfamily. 99.9 1.7E-26 3.7E-31 160.4 13.5 116 40-155 1-116 (169)
12 PF00025 Arf: ADP-ribosylation 99.9 2.2E-26 4.9E-31 160.8 12.9 125 35-159 11-135 (175)
13 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 4.5E-26 9.9E-31 160.2 13.2 117 35-153 2-123 (182)
14 cd04102 RabL3 RabL3 (Rab-like3 99.9 7.8E-26 1.7E-30 161.1 14.4 117 39-155 1-145 (202)
15 cd01875 RhoG RhoG subfamily. 99.9 5.1E-26 1.1E-30 161.1 13.4 116 38-155 3-123 (191)
16 cd04121 Rab40 Rab40 subfamily. 99.9 1.8E-25 3.9E-30 158.0 16.0 119 36-156 4-127 (189)
17 cd04120 Rab12 Rab12 subfamily. 99.9 1.5E-25 3.3E-30 159.8 15.7 116 40-156 2-122 (202)
18 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 6.8E-26 1.5E-30 156.8 13.3 115 41-157 2-117 (164)
19 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 9E-26 1.9E-30 157.5 13.7 119 37-155 14-132 (174)
20 KOG0098|consensus 99.9 3.6E-26 7.7E-31 156.0 11.2 123 36-159 4-131 (216)
21 KOG0073|consensus 99.9 8.5E-26 1.8E-30 151.1 12.7 135 25-160 4-138 (185)
22 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 7.7E-26 1.7E-30 157.7 13.1 119 38-156 2-124 (172)
23 cd04136 Rap_like Rap-like subf 99.9 1.4E-25 3.1E-30 154.3 14.1 118 38-155 1-122 (163)
24 smart00178 SAR Sar1p-like memb 99.9 7.9E-26 1.7E-30 159.2 13.0 124 36-159 15-138 (184)
25 cd04126 Rab20 Rab20 subfamily. 99.9 1.8E-25 3.9E-30 161.2 14.9 114 39-153 1-114 (220)
26 cd04131 Rnd Rnd subfamily. Th 99.9 8.8E-26 1.9E-30 158.2 12.6 114 38-153 1-119 (178)
27 cd04151 Arl1 Arl1 subfamily. 99.9 1E-25 2.2E-30 154.8 12.6 116 40-155 1-116 (158)
28 PTZ00369 Ras-like protein; Pro 99.9 2E-25 4.4E-30 157.7 14.5 120 36-155 3-126 (189)
29 cd04127 Rab27A Rab27a subfamil 99.9 2E-25 4.3E-30 156.2 14.2 120 37-156 3-137 (180)
30 cd04133 Rop_like Rop subfamily 99.9 1.4E-25 3.1E-30 156.8 13.2 114 39-154 2-120 (176)
31 cd01874 Cdc42 Cdc42 subfamily. 99.9 2.7E-25 5.8E-30 155.4 14.4 114 39-154 2-120 (175)
32 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.8E-25 3.8E-30 153.4 13.0 116 40-155 1-116 (158)
33 KOG0078|consensus 99.9 1.6E-25 3.5E-30 155.9 12.5 123 35-158 9-136 (207)
34 cd04175 Rap1 Rap1 subgroup. T 99.9 4.4E-25 9.4E-30 152.3 14.7 118 38-155 1-122 (164)
35 cd04122 Rab14 Rab14 subfamily. 99.9 3.5E-25 7.5E-30 153.2 14.2 118 38-156 2-124 (166)
36 cd04157 Arl6 Arl6 subfamily. 99.9 1.9E-25 4.1E-30 153.5 12.8 116 40-155 1-120 (162)
37 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 5.8E-25 1.3E-29 156.8 15.5 115 39-153 1-124 (201)
38 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 2.4E-25 5.3E-30 160.6 13.2 116 38-154 1-120 (222)
39 KOG0080|consensus 99.9 7.5E-26 1.6E-30 151.1 9.3 124 35-158 8-136 (209)
40 cd00879 Sar1 Sar1 subfamily. 99.9 3.4E-25 7.3E-30 156.4 13.2 119 36-154 17-135 (190)
41 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 3.4E-25 7.3E-30 155.9 13.0 118 37-154 2-124 (183)
42 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 8.6E-25 1.9E-29 152.1 14.7 116 40-155 2-122 (170)
43 cd04176 Rap2 Rap2 subgroup. T 99.9 8.3E-25 1.8E-29 150.7 14.2 118 38-155 1-122 (163)
44 cd04145 M_R_Ras_like M-Ras/R-R 99.9 7.2E-25 1.6E-29 150.9 13.6 118 38-155 2-123 (164)
45 cd04138 H_N_K_Ras_like H-Ras/N 99.9 8.3E-25 1.8E-29 150.0 13.8 116 38-153 1-120 (162)
46 cd00877 Ran Ran (Ras-related n 99.9 8.9E-25 1.9E-29 151.4 14.0 114 39-154 1-119 (166)
47 PLN03071 GTP-binding nuclear p 99.9 1E-24 2.2E-29 157.5 14.7 117 35-153 10-131 (219)
48 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 7.5E-25 1.6E-29 158.9 14.0 115 37-153 12-131 (232)
49 cd04156 ARLTS1 ARLTS1 subfamil 99.9 5.3E-25 1.1E-29 151.2 12.4 115 40-154 1-116 (160)
50 cd01865 Rab3 Rab3 subfamily. 99.9 1.5E-24 3.2E-29 150.0 14.7 117 39-156 2-123 (165)
51 cd04119 RJL RJL (RabJ-Like) su 99.9 7.6E-25 1.6E-29 151.1 13.2 115 39-153 1-124 (168)
52 KOG0087|consensus 99.9 2.4E-25 5.2E-30 154.8 10.5 124 34-158 10-138 (222)
53 cd01864 Rab19 Rab19 subfamily. 99.9 2E-24 4.2E-29 149.3 15.0 119 37-156 2-125 (165)
54 cd04117 Rab15 Rab15 subfamily. 99.9 2.4E-24 5.1E-29 148.6 14.9 117 39-156 1-122 (161)
55 cd04115 Rab33B_Rab33A Rab33B/R 99.9 2.2E-24 4.7E-29 149.9 14.5 119 38-156 2-126 (170)
56 smart00173 RAS Ras subfamily o 99.9 2.1E-24 4.6E-29 148.7 14.0 117 39-155 1-121 (164)
57 cd01867 Rab8_Rab10_Rab13_like 99.9 4.2E-24 9E-29 148.0 15.2 118 37-155 2-124 (167)
58 cd04128 Spg1 Spg1p. Spg1p (se 99.9 3E-24 6.6E-29 151.0 14.5 113 39-153 1-118 (182)
59 KOG0070|consensus 99.9 3.6E-25 7.7E-30 151.3 9.4 128 33-160 12-139 (181)
60 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1.3E-24 2.8E-29 150.2 12.3 116 40-155 1-123 (167)
61 PLN00023 GTP-binding protein; 99.9 4.2E-24 9.1E-29 159.9 15.8 121 34-154 17-166 (334)
62 cd01871 Rac1_like Rac1-like su 99.9 1.8E-24 3.9E-29 151.0 13.0 114 39-154 2-120 (174)
63 KOG0093|consensus 99.9 1.7E-24 3.7E-29 142.7 11.9 119 38-157 21-144 (193)
64 cd04111 Rab39 Rab39 subfamily. 99.9 2.5E-24 5.5E-29 154.6 13.9 119 38-156 2-126 (211)
65 cd04106 Rab23_lke Rab23-like s 99.9 2.9E-24 6.4E-29 147.7 13.6 116 39-156 1-123 (162)
66 cd04109 Rab28 Rab28 subfamily. 99.9 4.3E-24 9.4E-29 153.8 15.1 118 39-156 1-126 (215)
67 cd04155 Arl3 Arl3 subfamily. 99.9 3.4E-24 7.4E-29 149.0 13.9 120 36-155 12-131 (173)
68 cd04144 Ras2 Ras2 subfamily. 99.9 1.9E-24 4.1E-29 152.9 12.8 117 40-156 1-123 (190)
69 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 5.7E-24 1.2E-28 147.0 14.7 118 38-156 2-124 (166)
70 cd04124 RabL2 RabL2 subfamily. 99.9 5.6E-24 1.2E-28 146.6 14.1 113 39-153 1-118 (161)
71 cd04116 Rab9 Rab9 subfamily. 99.9 7.9E-24 1.7E-28 146.8 14.9 118 35-152 2-127 (170)
72 cd04140 ARHI_like ARHI subfami 99.9 8E-24 1.7E-28 146.3 14.9 117 39-155 2-124 (165)
73 cd04110 Rab35 Rab35 subfamily. 99.9 6.5E-24 1.4E-28 151.2 14.8 118 37-156 5-127 (199)
74 cd04113 Rab4 Rab4 subfamily. 99.9 6E-24 1.3E-28 146.1 14.0 116 39-155 1-121 (161)
75 cd04134 Rho3 Rho3 subfamily. 99.9 2.7E-24 5.9E-29 152.0 12.4 115 40-156 2-121 (189)
76 cd01866 Rab2 Rab2 subfamily. 99.9 9E-24 2E-28 146.5 14.7 117 38-155 4-125 (168)
77 cd04112 Rab26 Rab26 subfamily. 99.9 8.7E-24 1.9E-28 149.6 14.7 116 39-155 1-122 (191)
78 cd04125 RabA_like RabA-like su 99.9 7.3E-24 1.6E-28 149.5 14.1 117 39-156 1-122 (188)
79 cd01868 Rab11_like Rab11-like. 99.9 9E-24 2E-28 145.8 14.2 117 38-155 3-124 (165)
80 KOG0071|consensus 99.9 2.3E-24 5E-29 141.0 10.4 124 37-160 16-139 (180)
81 cd01860 Rab5_related Rab5-rela 99.9 8.7E-24 1.9E-28 145.4 13.8 117 38-155 1-122 (163)
82 KOG0394|consensus 99.9 2.1E-24 4.5E-29 147.1 10.4 121 35-155 6-134 (210)
83 KOG0079|consensus 99.9 7.9E-25 1.7E-29 144.4 8.1 118 39-158 9-131 (198)
84 cd04159 Arl10_like Arl10-like 99.9 1.4E-23 3.1E-28 143.0 14.4 115 41-155 2-117 (159)
85 cd04177 RSR1 RSR1 subgroup. R 99.9 9.8E-24 2.1E-28 146.3 13.7 118 39-156 2-123 (168)
86 cd04132 Rho4_like Rho4-like su 99.9 1.4E-23 2.9E-28 147.9 14.5 115 39-155 1-121 (187)
87 cd01861 Rab6 Rab6 subfamily. 99.9 1.4E-23 3.1E-28 144.1 14.3 116 39-155 1-121 (161)
88 cd04103 Centaurin_gamma Centau 99.9 1.4E-23 3.1E-28 144.4 14.1 110 39-153 1-113 (158)
89 PLN03118 Rab family protein; P 99.9 1.8E-23 3.9E-28 150.2 15.2 122 35-156 11-137 (211)
90 cd04118 Rab24 Rab24 subfamily. 99.9 2.3E-23 4.9E-28 147.5 15.1 114 39-154 1-120 (193)
91 cd01863 Rab18 Rab18 subfamily. 99.9 2E-23 4.3E-28 143.5 14.2 115 39-153 1-120 (161)
92 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.9E-23 4E-28 144.0 14.1 116 39-156 1-124 (164)
93 PLN03110 Rab GTPase; Provision 99.9 2.1E-23 4.6E-28 150.4 14.7 122 35-157 9-135 (216)
94 cd04143 Rhes_like Rhes_like su 99.9 2.9E-23 6.2E-28 152.2 15.4 116 39-154 1-128 (247)
95 KOG0086|consensus 99.9 2.5E-24 5.5E-29 142.8 8.7 120 38-158 9-133 (214)
96 cd01892 Miro2 Miro2 subfamily. 99.9 2.7E-23 5.8E-28 144.5 14.4 117 36-155 2-124 (169)
97 PF00071 Ras: Ras family; Int 99.9 1.6E-23 3.5E-28 144.1 12.3 116 40-156 1-121 (162)
98 cd01893 Miro1 Miro1 subfamily. 99.9 2.9E-23 6.2E-28 143.7 13.3 116 39-156 1-120 (166)
99 smart00175 RAB Rab subfamily o 99.9 5.6E-23 1.2E-27 141.4 14.6 116 39-155 1-121 (164)
100 cd01862 Rab7 Rab7 subfamily. 99.9 4.9E-23 1.1E-27 142.8 14.4 115 39-153 1-123 (172)
101 smart00176 RAN Ran (Ras-relate 99.9 3E-23 6.6E-28 147.7 12.9 108 44-153 1-113 (200)
102 cd04142 RRP22 RRP22 subfamily. 99.9 6E-23 1.3E-27 146.1 14.2 117 39-155 1-132 (198)
103 cd04146 RERG_RasL11_like RERG/ 99.9 5E-23 1.1E-27 142.2 12.6 116 40-155 1-122 (165)
104 KOG0075|consensus 99.9 3.3E-24 7.2E-29 141.2 6.2 121 38-158 20-141 (186)
105 smart00174 RHO Rho (Ras homolo 99.9 7.7E-23 1.7E-27 142.3 13.2 112 41-154 1-117 (174)
106 cd04135 Tc10 TC10 subfamily. 99.9 6E-23 1.3E-27 142.8 12.6 114 39-154 1-119 (174)
107 cd04123 Rab21 Rab21 subfamily. 99.9 8.5E-23 1.9E-27 140.0 13.0 117 39-156 1-122 (162)
108 PLN03108 Rab family protein; P 99.9 1.1E-22 2.4E-27 146.0 13.7 119 37-156 5-128 (210)
109 cd04148 RGK RGK subfamily. Th 99.9 2E-22 4.4E-27 145.7 15.0 115 39-155 1-122 (221)
110 cd04147 Ras_dva Ras-dva subfam 99.9 2.2E-22 4.7E-27 143.2 14.3 114 40-153 1-118 (198)
111 cd04139 RalA_RalB RalA/RalB su 99.9 3E-22 6.5E-27 137.6 14.5 116 39-154 1-120 (164)
112 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1.1E-22 2.4E-27 141.6 12.3 114 39-154 1-119 (173)
113 cd00154 Rab Rab family. Rab G 99.9 2.3E-22 5E-27 136.9 13.5 113 39-152 1-118 (159)
114 cd01870 RhoA_like RhoA-like su 99.9 2.3E-22 4.9E-27 140.0 13.3 114 39-154 2-120 (175)
115 PF08477 Miro: Miro-like prote 99.9 8E-23 1.7E-27 134.0 10.2 109 40-150 1-119 (119)
116 cd04114 Rab30 Rab30 subfamily. 99.9 9.8E-22 2.1E-26 136.0 15.5 119 37-156 6-129 (169)
117 cd00157 Rho Rho (Ras homology) 99.9 2.4E-22 5.2E-27 139.2 12.3 117 39-157 1-122 (171)
118 KOG0095|consensus 99.9 7.8E-23 1.7E-27 135.3 8.9 120 38-158 7-131 (213)
119 cd00876 Ras Ras family. The R 99.9 5.9E-22 1.3E-26 135.6 13.3 116 40-155 1-120 (160)
120 KOG0074|consensus 99.9 2.7E-22 5.9E-27 131.5 10.7 138 24-161 3-141 (185)
121 cd04137 RheB Rheb (Ras Homolog 99.9 6.1E-22 1.3E-26 138.6 13.0 117 39-155 2-122 (180)
122 cd01873 RhoBTB RhoBTB subfamil 99.9 5.2E-22 1.1E-26 140.9 12.6 112 38-153 2-134 (195)
123 PTZ00132 GTP-binding nuclear p 99.9 2.3E-21 5.1E-26 139.5 15.1 119 34-154 5-128 (215)
124 cd04105 SR_beta Signal recogni 99.9 5.9E-22 1.3E-26 141.5 11.2 119 40-158 2-128 (203)
125 KOG0088|consensus 99.9 6.8E-23 1.5E-27 136.7 5.4 123 34-157 9-136 (218)
126 KOG0081|consensus 99.9 1.1E-23 2.4E-28 140.6 0.9 121 39-159 10-144 (219)
127 KOG0395|consensus 99.9 1.5E-21 3.3E-26 138.3 11.5 121 37-157 2-126 (196)
128 cd04129 Rho2 Rho2 subfamily. 99.9 5E-21 1.1E-25 135.0 12.6 115 38-154 1-120 (187)
129 KOG0091|consensus 99.9 1.2E-21 2.6E-26 131.4 8.1 122 36-157 6-134 (213)
130 COG1100 GTPase SAR1 and relate 99.8 1.6E-20 3.5E-25 135.2 10.6 118 38-156 5-128 (219)
131 KOG0393|consensus 99.8 3.5E-21 7.5E-26 134.6 6.5 116 37-154 3-124 (198)
132 TIGR00450 mnmE_trmE_thdF tRNA 99.8 1.5E-19 3.2E-24 142.2 16.2 132 17-154 181-325 (442)
133 cd01898 Obg Obg subfamily. Th 99.8 7.1E-20 1.5E-24 126.7 12.1 117 40-156 2-131 (170)
134 cd01878 HflX HflX subfamily. 99.8 3.8E-19 8.1E-24 127.0 15.3 120 35-155 38-169 (204)
135 cd01890 LepA LepA subfamily. 99.8 1.1E-19 2.3E-24 127.0 11.7 110 40-154 2-134 (179)
136 TIGR00231 small_GTP small GTP- 99.8 3.3E-19 7.2E-24 120.9 13.8 117 38-155 1-124 (161)
137 cd04171 SelB SelB subfamily. 99.8 2.2E-19 4.8E-24 123.3 12.8 108 40-154 2-119 (164)
138 KOG0097|consensus 99.8 6.7E-20 1.4E-24 120.5 9.1 122 37-159 10-136 (215)
139 TIGR03156 GTP_HflX GTP-binding 99.8 4E-19 8.7E-24 136.2 14.7 117 36-154 187-316 (351)
140 cd01897 NOG NOG1 is a nucleola 99.8 3.3E-19 7.1E-24 123.2 12.6 115 40-156 2-130 (168)
141 cd01891 TypA_BipA TypA (tyrosi 99.8 5.4E-19 1.2E-23 125.3 13.3 112 39-155 3-133 (194)
142 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 3.3E-19 7.2E-24 123.0 11.9 110 40-154 2-117 (168)
143 cd00882 Ras_like_GTPase Ras-li 99.8 3E-19 6.6E-24 119.9 10.8 114 43-157 1-120 (157)
144 cd04164 trmE TrmE (MnmE, ThdF, 99.8 8.4E-19 1.8E-23 119.4 13.0 110 39-155 2-123 (157)
145 PRK05291 trmE tRNA modificatio 99.8 1.9E-18 4.2E-23 136.4 15.7 113 36-155 213-337 (449)
146 KOG0083|consensus 99.8 4.6E-21 1E-25 124.7 0.6 114 43-157 2-121 (192)
147 PRK12299 obgE GTPase CgtA; Rev 99.8 1.2E-18 2.7E-23 132.6 13.6 117 39-155 159-287 (335)
148 KOG0076|consensus 99.8 2.1E-20 4.6E-25 126.4 3.5 125 36-160 15-147 (197)
149 cd01881 Obg_like The Obg-like 99.8 5.6E-19 1.2E-23 122.7 10.6 114 43-156 1-137 (176)
150 KOG0072|consensus 99.8 1.1E-19 2.3E-24 119.6 5.3 126 34-159 14-139 (182)
151 PRK03003 GTP-binding protein D 99.8 2.8E-18 6.2E-23 136.4 13.7 113 37-154 37-161 (472)
152 TIGR02528 EutP ethanolamine ut 99.8 4.4E-19 9.5E-24 119.6 7.6 96 40-153 2-102 (142)
153 KOG4252|consensus 99.8 4.9E-20 1.1E-24 125.5 2.8 121 34-156 16-141 (246)
154 cd01879 FeoB Ferrous iron tran 99.8 2.8E-18 6E-23 117.2 11.5 106 43-155 1-117 (158)
155 PRK15494 era GTPase Era; Provi 99.8 4.8E-18 1E-22 129.9 13.7 114 36-154 50-175 (339)
156 TIGR00436 era GTP-binding prot 99.8 3.9E-18 8.5E-23 126.8 12.6 108 40-153 2-121 (270)
157 cd00881 GTP_translation_factor 99.8 8E-18 1.7E-22 118.1 12.8 109 40-153 1-128 (189)
158 KOG0077|consensus 99.8 3.2E-19 7E-24 119.9 5.3 126 36-161 18-143 (193)
159 TIGR02729 Obg_CgtA Obg family 99.8 1.2E-17 2.5E-22 127.1 13.5 117 39-155 158-289 (329)
160 cd01894 EngA1 EngA1 subfamily. 99.8 9.2E-18 2E-22 114.4 11.6 109 42-155 1-121 (157)
161 PRK11058 GTPase HflX; Provisio 99.8 2.4E-17 5.2E-22 129.1 15.3 115 39-154 198-324 (426)
162 PRK03003 GTP-binding protein D 99.8 9.2E-18 2E-22 133.5 13.2 114 36-154 209-337 (472)
163 KOG3883|consensus 99.8 3.1E-17 6.6E-22 109.2 13.0 125 33-157 4-136 (198)
164 PF02421 FeoB_N: Ferrous iron 99.8 1.6E-17 3.4E-22 113.2 11.1 109 39-155 1-121 (156)
165 cd04168 TetM_like Tet(M)-like 99.8 2.7E-17 6E-22 120.0 13.1 111 40-155 1-132 (237)
166 TIGR03598 GTPase_YsxC ribosome 99.8 1.9E-17 4.2E-22 116.0 11.6 114 35-154 15-144 (179)
167 cd01895 EngA2 EngA2 subfamily. 99.8 6.4E-17 1.4E-21 111.7 14.1 112 38-154 2-128 (174)
168 PRK00093 GTP-binding protein D 99.7 3.8E-17 8.3E-22 128.9 13.8 110 39-153 2-123 (435)
169 PRK04213 GTP-binding protein; 99.7 1.9E-18 4.1E-23 123.0 5.8 116 36-155 7-146 (201)
170 TIGR03594 GTPase_EngA ribosome 99.7 2.7E-17 5.8E-22 129.5 12.5 111 40-155 1-123 (429)
171 cd04163 Era Era subfamily. Er 99.7 7.3E-17 1.6E-21 110.5 13.0 111 38-153 3-125 (168)
172 cd01889 SelB_euk SelB subfamil 99.7 4.1E-17 8.8E-22 115.5 12.0 111 39-154 1-135 (192)
173 cd04169 RF3 RF3 subfamily. Pe 99.7 8.6E-17 1.9E-21 119.3 14.0 112 39-155 3-139 (267)
174 COG2229 Predicted GTPase [Gene 99.7 3.1E-17 6.6E-22 112.4 10.5 121 36-160 8-142 (187)
175 TIGR03594 GTPase_EngA ribosome 99.7 1.3E-16 2.7E-21 125.7 15.0 112 36-152 170-296 (429)
176 PRK12297 obgE GTPase CgtA; Rev 99.7 1.1E-16 2.3E-21 125.1 14.3 115 39-153 159-288 (424)
177 COG0486 ThdF Predicted GTPase 99.7 2.8E-16 6E-21 121.5 15.8 136 17-158 194-343 (454)
178 PF09439 SRPRB: Signal recogni 99.7 4.2E-18 9E-23 118.5 5.2 121 37-158 2-131 (181)
179 TIGR00487 IF-2 translation ini 99.7 1.5E-16 3.2E-21 128.9 14.5 115 35-154 84-202 (587)
180 PRK00089 era GTPase Era; Revie 99.7 9.9E-17 2.2E-21 120.5 12.7 112 37-153 4-127 (292)
181 PRK12296 obgE GTPase CgtA; Rev 99.7 1.1E-16 2.3E-21 126.8 12.5 118 38-155 159-300 (500)
182 PF01926 MMR_HSR1: 50S ribosom 99.7 7.6E-16 1.6E-20 100.5 13.9 103 40-148 1-116 (116)
183 PRK05306 infB translation init 99.7 3.2E-16 7E-21 129.9 14.6 115 35-154 287-404 (787)
184 TIGR01393 lepA GTP-binding pro 99.7 1E-16 2.3E-21 130.2 11.5 112 38-154 3-137 (595)
185 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 1.4E-16 3.1E-21 115.2 10.6 115 40-155 1-127 (232)
186 PRK09518 bifunctional cytidyla 99.7 2.2E-16 4.9E-21 131.0 13.2 113 37-154 274-398 (712)
187 cd04167 Snu114p Snu114p subfam 99.7 3.9E-16 8.5E-21 112.3 12.7 108 40-152 2-136 (213)
188 PRK00454 engB GTP-binding prot 99.7 2.4E-16 5.2E-21 111.5 11.5 115 35-154 21-150 (196)
189 cd04166 CysN_ATPS CysN_ATPS su 99.7 2.1E-16 4.6E-21 113.3 11.1 110 40-153 1-144 (208)
190 COG1084 Predicted GTPase [Gene 99.7 6.5E-16 1.4E-20 114.7 13.6 131 25-158 155-299 (346)
191 PF00009 GTP_EFTU: Elongation 99.7 4.9E-16 1.1E-20 109.7 12.4 111 37-152 2-135 (188)
192 PRK12298 obgE GTPase CgtA; Rev 99.7 4.4E-16 9.5E-21 120.8 13.0 116 39-154 160-290 (390)
193 cd00880 Era_like Era (E. coli 99.7 4E-16 8.6E-21 105.7 11.2 110 43-157 1-122 (163)
194 PRK00093 GTP-binding protein D 99.7 7.4E-16 1.6E-20 121.6 14.2 113 36-153 171-298 (435)
195 CHL00189 infB translation init 99.7 4.2E-16 9.2E-21 128.3 13.1 115 35-154 241-362 (742)
196 cd01885 EF2 EF2 (for archaea a 99.7 5E-16 1.1E-20 112.2 11.9 108 40-152 2-138 (222)
197 cd04170 EF-G_bact Elongation f 99.7 5.6E-16 1.2E-20 115.1 12.3 110 40-154 1-131 (268)
198 COG1160 Predicted GTPases [Gen 99.7 2E-16 4.3E-21 122.0 9.9 112 39-155 4-128 (444)
199 PRK12317 elongation factor 1-a 99.7 3.9E-16 8.4E-21 122.9 11.9 117 35-153 3-153 (425)
200 PRK09518 bifunctional cytidyla 99.7 5.6E-16 1.2E-20 128.6 13.4 113 37-154 449-576 (712)
201 TIGR01394 TypA_BipA GTP-bindin 99.7 7.1E-16 1.5E-20 125.2 13.6 111 40-155 3-132 (594)
202 cd01886 EF-G Elongation factor 99.7 8.2E-16 1.8E-20 114.2 12.9 111 40-155 1-132 (270)
203 TIGR00491 aIF-2 translation in 99.7 5.5E-16 1.2E-20 125.5 12.6 109 37-153 3-135 (590)
204 COG1159 Era GTPase [General fu 99.7 2.6E-16 5.7E-21 115.6 9.5 115 37-156 5-131 (298)
205 PTZ00099 rab6; Provisional 99.7 4.9E-16 1.1E-20 108.7 10.3 91 64-155 7-101 (176)
206 PRK15467 ethanolamine utilizat 99.7 4.5E-16 9.8E-21 107.0 9.7 100 40-154 3-106 (158)
207 KOG0096|consensus 99.7 3.2E-16 6.8E-21 107.7 8.7 118 36-155 8-130 (216)
208 PRK10218 GTP-binding protein; 99.7 1.1E-15 2.4E-20 124.0 13.4 116 37-157 4-138 (607)
209 KOG1673|consensus 99.7 9.8E-17 2.1E-21 107.0 5.3 123 34-158 16-143 (205)
210 cd04104 p47_IIGP_like p47 (47- 99.7 1E-15 2.2E-20 108.9 10.7 110 38-154 1-122 (197)
211 TIGR00483 EF-1_alpha translati 99.7 4.7E-16 1E-20 122.4 9.8 117 35-153 4-155 (426)
212 cd01888 eIF2_gamma eIF2-gamma 99.7 8.6E-16 1.9E-20 109.8 10.3 113 39-154 1-152 (203)
213 TIGR00475 selB selenocysteine- 99.7 1.7E-15 3.7E-20 123.0 13.2 109 39-155 1-119 (581)
214 PRK13351 elongation factor G; 99.7 1.5E-15 3.3E-20 125.8 13.1 115 36-155 6-141 (687)
215 PRK05433 GTP-binding protein L 99.7 1.5E-15 3.2E-20 123.6 12.6 114 37-155 6-142 (600)
216 cd01896 DRG The developmentall 99.7 6.2E-15 1.3E-19 107.4 14.3 80 40-119 2-91 (233)
217 PRK04004 translation initiatio 99.7 1.5E-15 3.3E-20 123.2 12.1 110 35-152 3-136 (586)
218 smart00275 G_alpha G protein a 99.7 3.3E-15 7.2E-20 114.3 13.0 88 67-154 169-266 (342)
219 PRK09554 feoB ferrous iron tra 99.6 4.3E-15 9.4E-20 123.6 13.8 110 38-155 3-128 (772)
220 PRK00741 prfC peptide chain re 99.6 2.9E-15 6.4E-20 120.2 12.4 117 35-156 7-148 (526)
221 cd00066 G-alpha G protein alph 99.6 4.6E-15 1E-19 112.6 12.4 88 67-154 146-243 (317)
222 TIGR00503 prfC peptide chain r 99.6 5E-15 1.1E-19 118.9 13.0 118 33-155 6-148 (527)
223 cd01853 Toc34_like Toc34-like 99.6 4.5E-14 9.8E-19 103.6 16.5 134 23-158 16-168 (249)
224 TIGR00991 3a0901s02IAP34 GTP-b 99.6 2.3E-14 5E-19 107.2 14.7 134 22-157 22-171 (313)
225 KOG1707|consensus 99.6 4.7E-15 1E-19 116.8 11.3 124 34-157 5-133 (625)
226 COG3596 Predicted GTPase [Gene 99.6 2.7E-15 5.8E-20 109.1 9.1 132 21-155 22-164 (296)
227 cd01883 EF1_alpha Eukaryotic e 99.6 4.6E-15 1E-19 107.2 10.0 111 40-153 1-151 (219)
228 TIGR00484 EF-G translation elo 99.6 2.1E-14 4.6E-19 119.0 14.3 115 36-155 8-143 (689)
229 cd01884 EF_Tu EF-Tu subfamily. 99.6 1.5E-14 3.2E-19 102.7 11.5 111 38-153 2-132 (195)
230 COG1160 Predicted GTPases [Gen 99.6 2.6E-14 5.7E-19 110.4 13.6 136 14-154 150-304 (444)
231 cd01850 CDC_Septin CDC/Septin. 99.6 3.2E-14 7E-19 106.0 12.2 111 37-153 3-157 (276)
232 TIGR00437 feoB ferrous iron tr 99.6 1.6E-14 3.5E-19 117.5 11.4 103 45-155 1-115 (591)
233 cd01876 YihA_EngB The YihA (En 99.6 2.8E-14 6.1E-19 97.8 10.5 107 40-154 1-125 (170)
234 KOG0090|consensus 99.6 6.8E-15 1.5E-19 103.1 6.6 121 38-158 38-164 (238)
235 COG0218 Predicted GTPase [Gene 99.6 4.5E-14 9.8E-19 98.7 10.5 114 37-155 23-151 (200)
236 PLN03126 Elongation factor Tu; 99.6 6.9E-14 1.5E-18 111.1 12.9 115 34-153 77-211 (478)
237 PRK12735 elongation factor Tu; 99.6 4.8E-14 1E-18 110.1 11.8 116 33-153 7-142 (396)
238 CHL00071 tufA elongation facto 99.6 1.1E-13 2.3E-18 108.5 12.8 116 33-153 7-142 (409)
239 TIGR03680 eif2g_arch translati 99.5 3E-14 6.6E-19 111.5 9.7 116 36-154 2-149 (406)
240 TIGR00490 aEF-2 translation el 99.5 7.9E-14 1.7E-18 116.0 12.6 118 33-155 14-154 (720)
241 PRK12736 elongation factor Tu; 99.5 6.6E-14 1.4E-18 109.2 11.4 114 35-153 9-142 (394)
242 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 6E-14 1.3E-18 99.7 10.2 115 39-155 1-132 (196)
243 KOG1191|consensus 99.5 1.8E-13 4E-18 106.2 13.1 123 33-155 263-405 (531)
244 PRK12739 elongation factor G; 99.5 1.4E-13 3.1E-18 114.1 13.1 115 35-154 5-140 (691)
245 KOG1423|consensus 99.5 6.3E-14 1.4E-18 103.3 9.7 114 34-153 68-199 (379)
246 PRK04000 translation initiatio 99.5 7.2E-14 1.6E-18 109.5 10.4 116 35-154 6-154 (411)
247 TIGR00485 EF-Tu translation el 99.5 1.7E-13 3.7E-18 107.0 12.3 116 34-154 8-143 (394)
248 PRK05124 cysN sulfate adenylyl 99.5 1.5E-13 3.2E-18 109.4 11.9 114 35-153 24-174 (474)
249 TIGR02034 CysN sulfate adenyly 99.5 9.5E-14 2.1E-18 108.7 9.8 112 39-154 1-148 (406)
250 cd04165 GTPBP1_like GTPBP1-lik 99.5 6E-13 1.3E-17 96.4 12.8 110 40-154 1-153 (224)
251 PRK00007 elongation factor G; 99.5 7.1E-13 1.5E-17 110.0 13.1 116 35-155 7-143 (693)
252 PRK00049 elongation factor Tu; 99.5 6E-13 1.3E-17 103.9 11.9 114 35-153 9-142 (396)
253 PRK10512 selenocysteinyl-tRNA- 99.5 7.6E-13 1.6E-17 108.1 12.8 110 40-154 2-119 (614)
254 KOG0082|consensus 99.5 3.7E-13 8.1E-18 102.0 10.1 89 66-154 179-277 (354)
255 PLN03127 Elongation factor Tu; 99.5 9.1E-13 2E-17 104.1 12.7 114 35-153 58-191 (447)
256 PRK05506 bifunctional sulfate 99.5 4.2E-13 9.1E-18 110.4 10.4 116 34-153 20-171 (632)
257 PRK12740 elongation factor G; 99.5 1.1E-12 2.3E-17 108.7 12.0 107 44-155 1-128 (668)
258 PF05049 IIGP: Interferon-indu 99.4 2.7E-13 5.8E-18 103.9 7.7 130 15-151 12-153 (376)
259 PF10662 PduV-EutP: Ethanolami 99.4 5.4E-13 1.2E-17 89.3 7.6 96 40-152 3-102 (143)
260 KOG1489|consensus 99.4 9.5E-13 2.1E-17 97.5 9.5 112 39-154 197-327 (366)
261 PTZ00141 elongation factor 1- 99.4 1.7E-12 3.6E-17 102.7 11.4 114 35-152 4-158 (446)
262 PTZ00416 elongation factor 2; 99.4 2.2E-12 4.7E-17 108.8 12.8 114 34-152 15-157 (836)
263 PLN00116 translation elongatio 99.4 2.5E-12 5.4E-17 108.6 13.0 118 31-153 12-164 (843)
264 PLN00043 elongation factor 1-a 99.4 1.6E-12 3.5E-17 102.8 11.0 113 35-152 4-158 (447)
265 KOG1145|consensus 99.4 9.1E-13 2E-17 103.6 9.1 117 34-156 149-270 (683)
266 COG2262 HflX GTPases [General 99.4 8.7E-12 1.9E-16 95.4 14.2 121 35-156 189-321 (411)
267 PF04548 AIG1: AIG1 family; I 99.4 2E-12 4.2E-17 93.0 9.2 116 39-156 1-133 (212)
268 KOG4423|consensus 99.4 4.6E-15 1E-19 101.8 -5.0 119 36-154 23-150 (229)
269 PF00503 G-alpha: G-protein al 99.4 3.8E-12 8.2E-17 99.3 10.5 87 67-153 220-317 (389)
270 COG0370 FeoB Fe2+ transport sy 99.4 8.6E-12 1.9E-16 100.6 11.8 111 38-156 3-125 (653)
271 KOG1490|consensus 99.4 2.2E-12 4.7E-17 100.6 7.3 135 23-159 153-301 (620)
272 cd01882 BMS1 Bms1. Bms1 is an 99.4 2.6E-11 5.7E-16 87.9 12.6 113 33-154 34-148 (225)
273 PRK07560 elongation factor EF- 99.4 1.5E-11 3.2E-16 102.7 12.6 117 33-154 15-154 (731)
274 COG5256 TEF1 Translation elong 99.3 2.3E-12 5E-17 98.6 6.8 114 35-153 4-159 (428)
275 COG0532 InfB Translation initi 99.3 5.5E-12 1.2E-16 99.2 8.7 116 36-156 3-124 (509)
276 KOG3886|consensus 99.3 1.9E-12 4.1E-17 92.1 5.1 120 37-158 3-135 (295)
277 PF00350 Dynamin_N: Dynamin fa 99.3 4.2E-11 9.1E-16 82.8 11.1 63 83-149 102-168 (168)
278 COG0536 Obg Predicted GTPase [ 99.3 2.8E-11 6E-16 90.7 9.9 112 40-155 161-291 (369)
279 PF00735 Septin: Septin; Inte 99.3 7.2E-11 1.6E-15 88.2 10.2 113 38-155 4-158 (281)
280 TIGR00993 3a0901s04IAP86 chlor 99.2 2.4E-10 5.3E-15 92.7 13.6 121 36-156 116-253 (763)
281 COG1217 TypA Predicted membran 99.2 7.7E-11 1.7E-15 91.5 9.8 115 38-157 5-138 (603)
282 cd01899 Ygr210 Ygr210 subfamil 99.2 4.9E-11 1.1E-15 90.5 8.6 76 41-116 1-110 (318)
283 PRK09866 hypothetical protein; 99.2 4.8E-10 1E-14 90.8 14.1 69 82-153 230-303 (741)
284 KOG0099|consensus 99.2 5E-11 1.1E-15 86.6 7.4 86 69-154 189-284 (379)
285 COG0480 FusA Translation elong 99.2 2.5E-10 5.4E-15 94.1 12.1 117 35-156 7-145 (697)
286 KOG0462|consensus 99.2 1.3E-10 2.8E-15 91.7 9.7 117 36-157 58-195 (650)
287 PTZ00327 eukaryotic translatio 99.2 1.7E-10 3.6E-15 91.4 9.8 117 34-153 30-185 (460)
288 smart00010 small_GTPase Small 99.2 2E-10 4.4E-15 75.1 8.3 90 39-154 1-92 (124)
289 KOG1532|consensus 99.2 2.4E-10 5.1E-15 83.6 8.4 121 32-155 13-197 (366)
290 COG1163 DRG Predicted GTPase [ 99.1 4.4E-10 9.6E-15 83.8 9.8 92 38-129 63-165 (365)
291 KOG0468|consensus 99.1 5.2E-10 1.1E-14 90.1 10.4 124 25-153 115-263 (971)
292 KOG0085|consensus 99.1 3.7E-11 8.1E-16 85.9 3.6 88 68-155 185-282 (359)
293 PRK09602 translation-associate 99.1 9.5E-10 2.1E-14 85.8 11.7 78 39-116 2-113 (396)
294 PF03029 ATP_bind_1: Conserved 99.1 2E-10 4.4E-15 83.9 5.6 68 83-154 92-171 (238)
295 smart00053 DYNc Dynamin, GTPas 99.1 9.5E-09 2.1E-13 75.0 14.3 70 82-155 125-208 (240)
296 TIGR02836 spore_IV_A stage IV 99.1 1.6E-09 3.5E-14 83.8 10.5 121 28-152 7-193 (492)
297 KOG3905|consensus 99.1 8E-09 1.7E-13 77.4 13.1 112 17-130 30-153 (473)
298 PRK13768 GTPase; Provisional 99.0 4.9E-10 1.1E-14 82.7 6.0 72 83-156 98-179 (253)
299 COG0481 LepA Membrane GTPase L 99.0 1.2E-09 2.7E-14 85.1 8.3 116 37-157 8-146 (603)
300 COG4108 PrfC Peptide chain rel 99.0 7.2E-10 1.6E-14 85.6 6.6 118 35-157 9-151 (528)
301 PTZ00258 GTP-binding protein; 99.0 3E-09 6.6E-14 82.5 9.8 81 35-115 18-125 (390)
302 KOG1707|consensus 99.0 1E-08 2.3E-13 81.6 12.4 119 32-155 419-542 (625)
303 PRK14845 translation initiatio 99.0 2.8E-09 6.1E-14 91.2 9.9 96 50-153 473-592 (1049)
304 cd01858 NGP_1 NGP-1. Autoanti 99.0 2.7E-09 6E-14 73.1 8.2 57 36-92 100-157 (157)
305 KOG0458|consensus 99.0 1.9E-09 4.1E-14 85.7 8.2 118 34-154 173-330 (603)
306 cd01900 YchF YchF subfamily. 99.0 2E-09 4.3E-14 80.1 7.7 75 41-115 1-102 (274)
307 PRK09601 GTP-binding protein Y 99.0 3.6E-09 7.9E-14 81.2 8.9 78 39-116 3-107 (364)
308 cd01859 MJ1464 MJ1464. This f 98.9 6.2E-09 1.3E-13 71.2 8.3 59 34-92 97-156 (156)
309 PF05783 DLIC: Dynein light in 98.9 4.3E-08 9.4E-13 77.9 13.8 87 34-122 21-117 (472)
310 cd04178 Nucleostemin_like Nucl 98.9 2.8E-09 6.1E-14 74.2 6.3 58 35-92 114-172 (172)
311 COG5019 CDC3 Septin family pro 98.9 1.8E-08 3.8E-13 76.5 10.8 117 34-156 19-179 (373)
312 KOG2655|consensus 98.9 1.8E-08 4E-13 76.8 9.9 117 33-155 16-174 (366)
313 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 5.8E-09 1.3E-13 70.3 6.4 53 39-92 84-138 (141)
314 COG5192 BMS1 GTP-binding prote 98.9 8.4E-09 1.8E-13 82.3 8.0 116 32-154 63-178 (1077)
315 PRK09563 rbgA GTPase YlqF; Rev 98.9 1.6E-08 3.5E-13 76.0 8.8 58 36-93 119-177 (287)
316 PRK09435 membrane ATPase/prote 98.9 3.9E-08 8.4E-13 75.0 10.8 118 25-154 43-209 (332)
317 COG2895 CysN GTPases - Sulfate 98.8 3.9E-08 8.4E-13 74.4 10.2 116 36-156 4-156 (431)
318 KOG0461|consensus 98.8 1.7E-08 3.7E-13 76.2 8.2 115 35-155 4-138 (522)
319 TIGR00750 lao LAO/AO transport 98.8 5.6E-08 1.2E-12 73.5 10.8 120 24-155 20-188 (300)
320 KOG1486|consensus 98.8 4.9E-08 1.1E-12 70.9 9.7 85 38-122 62-156 (364)
321 TIGR03596 GTPase_YlqF ribosome 98.8 2.4E-08 5.2E-13 74.6 7.9 56 36-92 116-173 (276)
322 cd01855 YqeH YqeH. YqeH is an 98.8 9.7E-09 2.1E-13 72.5 5.3 55 37-92 126-190 (190)
323 cd01856 YlqF YlqF. Proteins o 98.8 2.4E-08 5.1E-13 69.5 6.6 57 35-92 112-170 (171)
324 KOG3887|consensus 98.8 2E-08 4.3E-13 72.5 6.1 118 38-157 27-153 (347)
325 KOG1144|consensus 98.8 1.3E-08 2.9E-13 83.1 5.4 113 35-152 472-605 (1064)
326 COG1161 Predicted GTPases [Gen 98.7 3.3E-08 7.1E-13 75.4 6.3 58 35-92 129-187 (322)
327 KOG1954|consensus 98.7 2.2E-07 4.8E-12 70.9 10.3 116 37-156 57-228 (532)
328 COG4917 EutP Ethanolamine util 98.7 1.4E-08 3.1E-13 65.9 3.4 99 40-154 3-105 (148)
329 KOG1547|consensus 98.7 6.3E-08 1.4E-12 69.8 6.9 121 30-156 38-201 (336)
330 PF03308 ArgK: ArgK protein; 98.7 4.2E-08 9E-13 71.7 5.8 118 23-152 14-180 (266)
331 cd01851 GBP Guanylate-binding 98.7 1.5E-06 3.3E-11 63.1 13.4 83 36-118 5-104 (224)
332 COG0050 TufB GTPases - transla 98.7 5E-08 1.1E-12 72.3 5.4 119 34-156 8-145 (394)
333 COG1703 ArgK Putative periplas 98.7 3.7E-07 8.1E-12 67.8 10.0 118 25-154 38-204 (323)
334 cd01849 YlqF_related_GTPase Yl 98.7 7.5E-08 1.6E-12 65.9 6.1 57 35-92 97-155 (155)
335 COG0012 Predicted GTPase, prob 98.6 2.4E-07 5.3E-12 70.8 9.0 79 38-116 2-108 (372)
336 TIGR00092 GTP-binding protein 98.6 5.1E-07 1.1E-11 69.6 9.4 78 39-116 3-108 (368)
337 cd03112 CobW_like The function 98.6 5.4E-07 1.2E-11 61.9 8.2 63 82-151 87-158 (158)
338 TIGR03348 VI_IcmF type VI secr 98.5 5E-07 1.1E-11 79.3 9.2 112 41-154 114-258 (1169)
339 KOG0467|consensus 98.5 7.6E-07 1.6E-11 73.1 8.9 114 34-152 5-137 (887)
340 PRK12288 GTPase RsgA; Reviewed 98.5 2.5E-07 5.4E-12 71.2 5.8 23 40-62 207-229 (347)
341 KOG2486|consensus 98.5 7.6E-07 1.7E-11 65.5 7.4 113 36-153 134-262 (320)
342 PF03193 DUF258: Protein of un 98.5 8.8E-08 1.9E-12 65.7 2.3 24 39-62 36-59 (161)
343 KOG1491|consensus 98.4 1.2E-06 2.6E-11 66.1 8.1 82 35-116 17-125 (391)
344 PRK12289 GTPase RsgA; Reviewed 98.4 4.1E-07 8.9E-12 70.1 5.8 55 40-95 174-237 (352)
345 TIGR00157 ribosome small subun 98.4 5E-07 1.1E-11 66.4 5.7 58 93-154 24-82 (245)
346 TIGR03597 GTPase_YqeH ribosome 98.4 7.9E-07 1.7E-11 68.9 6.2 57 39-95 155-217 (360)
347 KOG0410|consensus 98.4 5.6E-06 1.2E-10 62.4 10.2 126 33-159 173-314 (410)
348 TIGR00157 ribosome small subun 98.4 5.9E-07 1.3E-11 66.0 4.6 53 39-95 121-184 (245)
349 COG3276 SelB Selenocysteine-sp 98.3 4.2E-06 9E-11 65.2 9.2 110 40-154 2-118 (447)
350 COG1618 Predicted nucleotide k 98.3 1.4E-05 3.1E-10 54.5 10.1 26 36-61 3-28 (179)
351 COG5257 GCD11 Translation init 98.3 6.9E-07 1.5E-11 67.1 3.6 116 36-156 8-157 (415)
352 TIGR01425 SRP54_euk signal rec 98.3 1.8E-05 4E-10 62.3 11.5 110 37-153 99-253 (429)
353 KOG0448|consensus 98.3 1E-05 2.2E-10 66.0 10.2 68 83-155 207-277 (749)
354 PRK13796 GTPase YqeH; Provisio 98.3 1.3E-06 2.8E-11 67.8 4.8 57 38-94 160-222 (365)
355 KOG0705|consensus 98.3 8.1E-07 1.8E-11 70.8 3.6 112 35-151 27-141 (749)
356 cd01854 YjeQ_engC YjeQ/EngC. 98.2 2.7E-06 5.9E-11 64.0 5.9 57 39-96 162-227 (287)
357 PRK14722 flhF flagellar biosyn 98.2 1.6E-05 3.4E-10 61.7 10.1 119 35-153 134-295 (374)
358 PRK00098 GTPase RsgA; Reviewed 98.2 3.3E-06 7.2E-11 63.8 6.0 24 39-62 165-188 (298)
359 KOG0464|consensus 98.2 3.1E-07 6.8E-12 71.1 0.5 113 38-155 37-170 (753)
360 PRK10416 signal recognition pa 98.2 3.4E-05 7.4E-10 58.8 11.2 24 37-60 113-136 (318)
361 KOG1143|consensus 98.2 4.6E-06 1E-10 64.0 6.1 113 38-156 167-320 (591)
362 KOG3859|consensus 98.2 5.8E-06 1.3E-10 61.1 6.1 117 31-153 35-190 (406)
363 KOG0465|consensus 98.1 2.7E-06 5.9E-11 68.5 4.4 116 37-157 38-174 (721)
364 PF00448 SRP54: SRP54-type pro 98.1 1.9E-05 4.2E-10 56.1 8.2 108 39-153 2-154 (196)
365 TIGR00064 ftsY signal recognit 98.1 4.4E-05 9.5E-10 57.0 10.5 66 81-154 154-232 (272)
366 KOG1534|consensus 98.1 4.1E-06 9E-11 59.5 4.5 71 82-156 98-181 (273)
367 KOG0460|consensus 98.1 6.1E-06 1.3E-10 62.5 5.2 118 35-156 51-187 (449)
368 PRK11889 flhF flagellar biosyn 98.1 3E-05 6.4E-10 60.5 9.0 23 37-59 240-262 (436)
369 KOG0447|consensus 98.1 4.6E-05 1E-09 61.2 10.1 71 82-155 412-495 (980)
370 cd03114 ArgK-like The function 98.1 5.3E-05 1.1E-09 51.5 9.0 58 81-150 91-148 (148)
371 COG1162 Predicted GTPases [Gen 98.1 7.6E-06 1.6E-10 61.3 5.0 23 40-62 166-188 (301)
372 COG1419 FlhF Flagellar GTP-bin 98.1 5.9E-05 1.3E-09 58.6 10.0 109 37-152 202-351 (407)
373 COG5258 GTPBP1 GTPase [General 98.0 2.2E-05 4.7E-10 60.5 7.4 119 32-155 111-271 (527)
374 PRK14974 cell division protein 98.0 2.9E-05 6.3E-10 59.5 7.6 23 37-59 139-161 (336)
375 KOG1487|consensus 98.0 2.4E-05 5.1E-10 57.4 6.6 88 39-126 60-157 (358)
376 PRK09270 nucleoside triphospha 98.0 2E-05 4.3E-10 57.4 5.8 48 14-61 9-56 (229)
377 PRK11537 putative GTP-binding 98.0 5.6E-05 1.2E-09 57.7 8.5 66 83-154 92-165 (318)
378 COG3523 IcmF Type VI protein s 97.9 4.1E-05 8.9E-10 66.7 7.5 111 41-154 128-271 (1188)
379 KOG1424|consensus 97.9 1.5E-05 3.4E-10 63.2 4.4 54 38-92 314-369 (562)
380 KOG2485|consensus 97.9 4.7E-05 1E-09 57.1 6.6 64 28-91 133-205 (335)
381 PRK00771 signal recognition pa 97.9 0.00013 2.8E-09 57.9 9.5 24 36-59 93-116 (437)
382 PRK05703 flhF flagellar biosyn 97.9 0.0003 6.5E-09 55.8 11.5 22 38-59 221-242 (424)
383 cd03115 SRP The signal recogni 97.9 0.00027 5.9E-09 49.0 10.1 68 81-155 82-155 (173)
384 PRK14721 flhF flagellar biosyn 97.9 0.00024 5.3E-09 56.0 10.5 25 36-60 189-213 (420)
385 cd03222 ABC_RNaseL_inhibitor T 97.8 0.00034 7.4E-09 49.0 9.8 27 36-62 23-49 (177)
386 PRK12727 flagellar biosynthesi 97.8 0.00047 1E-08 55.8 11.5 25 36-60 348-372 (559)
387 PF02492 cobW: CobW/HypB/UreG, 97.8 0.00015 3.2E-09 50.8 7.8 110 40-155 2-157 (178)
388 PRK14723 flhF flagellar biosyn 97.8 0.00029 6.3E-09 59.3 10.6 24 38-61 185-208 (767)
389 cd01983 Fer4_NifH The Fer4_Nif 97.8 0.00025 5.5E-09 43.7 8.1 97 41-147 2-99 (99)
390 PF13207 AAA_17: AAA domain; P 97.8 1.9E-05 4.2E-10 51.4 3.1 22 40-61 1-22 (121)
391 KOG2423|consensus 97.8 1.3E-05 2.7E-10 62.0 2.4 68 25-92 292-362 (572)
392 COG1136 SalX ABC-type antimicr 97.8 3.3E-05 7.1E-10 55.9 4.3 35 28-62 21-55 (226)
393 KOG2484|consensus 97.8 2.8E-05 6E-10 60.0 4.1 68 23-91 235-306 (435)
394 COG1126 GlnQ ABC-type polar am 97.8 1.9E-05 4E-10 56.5 2.6 38 25-62 15-52 (240)
395 TIGR00959 ffh signal recogniti 97.8 0.00045 9.8E-09 54.7 10.5 22 37-58 98-119 (428)
396 PF05621 TniB: Bacterial TniB 97.8 0.00078 1.7E-08 50.7 11.2 31 33-63 56-86 (302)
397 PRK10867 signal recognition pa 97.7 0.00053 1.1E-08 54.4 10.4 24 36-59 98-121 (433)
398 COG0563 Adk Adenylate kinase a 97.7 3E-05 6.4E-10 54.4 3.1 22 40-61 2-23 (178)
399 PRK08118 topology modulation p 97.7 3.1E-05 6.7E-10 53.7 3.1 22 40-61 3-24 (167)
400 cd01857 HSR1_MMR1 HSR1/MMR1. 97.7 5.9E-05 1.3E-09 50.7 4.4 50 100-154 6-57 (141)
401 PF06858 NOG1: Nucleolar GTP-b 97.7 5.2E-05 1.1E-09 42.7 3.4 43 106-150 14-58 (58)
402 PF13555 AAA_29: P-loop contai 97.7 4E-05 8.8E-10 44.0 2.9 20 40-59 25-44 (62)
403 COG4619 ABC-type uncharacteriz 97.7 4.5E-05 9.8E-10 52.7 3.5 43 25-71 16-58 (223)
404 PRK13695 putative NTPase; Prov 97.7 0.00044 9.5E-09 48.1 8.5 21 40-60 2-22 (174)
405 COG0523 Putative GTPases (G3E 97.7 0.00058 1.3E-08 52.2 9.6 69 82-156 85-162 (323)
406 PRK07261 topology modulation p 97.7 4.1E-05 9E-10 53.2 3.1 22 40-61 2-23 (171)
407 PF03266 NTPase_1: NTPase; In 97.7 7.9E-05 1.7E-09 51.7 4.4 22 40-61 1-22 (168)
408 KOG1533|consensus 97.6 0.00013 2.7E-09 52.9 5.3 71 82-156 97-180 (290)
409 COG2884 FtsE Predicted ATPase 97.6 0.00012 2.5E-09 51.6 4.9 38 25-62 15-52 (223)
410 cd01859 MJ1464 MJ1464. This f 97.6 8.7E-05 1.9E-09 50.6 4.3 53 96-153 3-55 (156)
411 TIGR02475 CobW cobalamin biosy 97.6 0.00014 3.1E-09 56.0 5.8 22 40-61 6-27 (341)
412 PRK10751 molybdopterin-guanine 97.6 0.00023 4.9E-09 49.6 6.2 25 38-62 6-30 (173)
413 PRK12289 GTPase RsgA; Reviewed 97.6 0.00014 3.1E-09 56.2 5.7 53 98-154 82-135 (352)
414 cd01854 YjeQ_engC YjeQ/EngC. 97.6 0.00014 2.9E-09 54.8 5.5 50 101-154 74-124 (287)
415 PF13671 AAA_33: AAA domain; P 97.6 5.1E-05 1.1E-09 50.8 2.8 21 41-61 2-22 (143)
416 PF00005 ABC_tran: ABC transpo 97.6 6E-05 1.3E-09 50.1 3.2 27 36-62 9-35 (137)
417 cd00009 AAA The AAA+ (ATPases 97.6 0.0011 2.4E-08 43.6 9.1 26 37-62 18-43 (151)
418 COG3840 ThiQ ABC-type thiamine 97.6 0.00024 5.3E-09 49.8 5.7 28 35-62 22-49 (231)
419 PRK12724 flagellar biosynthesi 97.6 0.00065 1.4E-08 53.6 8.8 23 38-60 223-245 (432)
420 COG1134 TagH ABC-type polysacc 97.6 8.3E-05 1.8E-09 54.1 3.5 43 25-71 40-82 (249)
421 PF09547 Spore_IV_A: Stage IV 97.6 0.0016 3.4E-08 51.3 10.6 32 28-59 7-38 (492)
422 PRK12723 flagellar biosynthesi 97.5 0.0016 3.4E-08 51.1 10.7 23 37-59 173-195 (388)
423 COG1117 PstB ABC-type phosphat 97.5 3.4E-05 7.4E-10 55.2 1.4 38 23-60 18-55 (253)
424 cd01855 YqeH YqeH. YqeH is an 97.5 0.00014 2.9E-09 51.3 4.3 53 95-154 24-76 (190)
425 TIGR00235 udk uridine kinase. 97.5 9.4E-05 2E-09 53.0 3.4 26 35-60 3-28 (207)
426 cd02038 FleN-like FleN is a me 97.5 0.00086 1.9E-08 45.0 7.9 102 42-151 4-109 (139)
427 cd01858 NGP_1 NGP-1. Autoanti 97.5 0.00018 3.9E-09 49.2 4.7 51 101-154 4-54 (157)
428 cd03238 ABC_UvrA The excision 97.5 5.8E-05 1.2E-09 52.8 2.2 33 28-60 11-43 (176)
429 COG4598 HisP ABC-type histidin 97.5 0.00035 7.6E-09 48.9 6.0 47 16-62 8-56 (256)
430 PRK12726 flagellar biosynthesi 97.5 0.00046 1E-08 53.8 7.2 24 36-59 204-227 (407)
431 COG2274 SunT ABC-type bacterio 97.5 9.6E-05 2.1E-09 61.9 3.8 42 26-71 487-528 (709)
432 TIGR02868 CydC thiol reductant 97.5 9.6E-05 2.1E-09 60.1 3.7 36 27-62 350-385 (529)
433 COG1116 TauB ABC-type nitrate/ 97.5 7.2E-05 1.6E-09 54.5 2.6 37 26-62 17-53 (248)
434 cd03264 ABC_drug_resistance_li 97.5 4.9E-05 1.1E-09 54.5 1.6 34 28-62 16-49 (211)
435 COG1120 FepC ABC-type cobalami 97.5 5.2E-05 1.1E-09 55.9 1.7 35 27-61 17-51 (258)
436 PRK10078 ribose 1,5-bisphospho 97.5 0.00011 2.3E-09 51.7 3.2 22 40-61 4-25 (186)
437 COG3839 MalK ABC-type sugar tr 97.5 0.00018 3.9E-09 55.1 4.5 34 29-62 20-53 (338)
438 COG4559 ABC-type hemin transpo 97.5 0.00013 2.8E-09 52.2 3.5 36 27-62 16-51 (259)
439 TIGR02673 FtsE cell division A 97.5 7.4E-05 1.6E-09 53.6 2.3 36 27-62 17-52 (214)
440 TIGR01166 cbiO cobalt transpor 97.4 7.9E-05 1.7E-09 52.5 2.2 35 28-62 8-42 (190)
441 cd03259 ABC_Carb_Solutes_like 97.4 8.1E-05 1.8E-09 53.4 2.3 36 27-62 15-50 (213)
442 PF05729 NACHT: NACHT domain 97.4 0.00063 1.4E-08 46.3 6.6 23 40-62 2-24 (166)
443 cd02019 NK Nucleoside/nucleoti 97.4 0.00014 3.1E-09 42.8 2.9 21 41-61 2-22 (69)
444 KOG0780|consensus 97.4 0.00081 1.8E-08 52.1 7.6 99 34-132 97-240 (483)
445 TIGR02770 nickel_nikD nickel i 97.4 0.00021 4.5E-09 52.0 4.4 31 32-62 6-36 (230)
446 COG1121 ZnuC ABC-type Mn/Zn tr 97.4 7.2E-05 1.6E-09 55.0 1.9 35 27-61 19-53 (254)
447 PRK00098 GTPase RsgA; Reviewed 97.4 0.00019 4.2E-09 54.3 4.3 48 102-153 77-125 (298)
448 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.4 6E-05 1.3E-09 54.2 1.5 35 28-62 20-54 (218)
449 TIGR00150 HI0065_YjeE ATPase, 97.4 0.00074 1.6E-08 45.0 6.5 27 36-62 20-46 (133)
450 cd03225 ABC_cobalt_CbiO_domain 97.4 7.5E-05 1.6E-09 53.5 1.9 35 28-62 17-51 (211)
451 TIGR02322 phosphon_PhnN phosph 97.4 0.00012 2.5E-09 51.1 2.8 22 40-61 3-24 (179)
452 PF13521 AAA_28: AAA domain; P 97.4 8.8E-05 1.9E-09 51.0 2.0 22 40-61 1-22 (163)
453 cd03257 ABC_NikE_OppD_transpor 97.4 9.8E-05 2.1E-09 53.4 2.3 36 27-62 20-55 (228)
454 TIGR02315 ABC_phnC phosphonate 97.4 9.5E-05 2.1E-09 54.1 2.3 36 27-62 17-52 (243)
455 smart00382 AAA ATPases associa 97.4 0.00017 3.7E-09 47.1 3.3 25 39-63 3-27 (148)
456 cd03262 ABC_HisP_GlnQ_permease 97.4 9.2E-05 2E-09 53.1 2.1 35 28-62 16-50 (213)
457 cd03226 ABC_cobalt_CbiO_domain 97.4 7.7E-05 1.7E-09 53.2 1.7 35 28-62 16-50 (205)
458 cd00820 PEPCK_HprK Phosphoenol 97.4 0.00015 3.2E-09 46.5 2.8 25 35-59 12-36 (107)
459 TIGR00960 3a0501s02 Type II (G 97.4 6.9E-05 1.5E-09 53.9 1.4 35 28-62 19-53 (216)
460 cd03265 ABC_DrrA DrrA is the A 97.4 9.1E-05 2E-09 53.4 2.1 35 28-62 16-50 (220)
461 TIGR00101 ureG urease accessor 97.4 0.00015 3.4E-09 51.6 3.2 24 38-61 1-24 (199)
462 PRK05480 uridine/cytidine kina 97.4 0.00018 3.9E-09 51.5 3.5 25 36-60 4-28 (209)
463 cd03261 ABC_Org_Solvent_Resist 97.4 7.2E-05 1.6E-09 54.5 1.5 35 28-62 16-50 (235)
464 cd03263 ABC_subfamily_A The AB 97.4 9.2E-05 2E-09 53.4 2.0 36 27-62 17-52 (220)
465 cd00071 GMPK Guanosine monopho 97.4 0.00016 3.4E-09 48.5 2.9 21 41-61 2-22 (137)
466 cd03218 ABC_YhbG The ABC trans 97.4 0.00011 2.3E-09 53.4 2.3 35 28-62 16-50 (232)
467 PRK15177 Vi polysaccharide exp 97.4 9.3E-05 2E-09 53.3 1.9 32 31-62 6-37 (213)
468 TIGR03797 NHPM_micro_ABC2 NHPM 97.4 0.00015 3.3E-09 60.8 3.5 36 27-62 468-503 (686)
469 COG4525 TauB ABC-type taurine 97.4 0.00022 4.8E-09 50.5 3.7 38 25-62 18-55 (259)
470 cd03301 ABC_MalK_N The N-termi 97.4 9.1E-05 2E-09 53.1 1.8 35 28-62 16-50 (213)
471 PF04665 Pox_A32: Poxvirus A32 97.4 0.00015 3.3E-09 53.0 2.9 29 34-62 9-37 (241)
472 cd03235 ABC_Metallic_Cations A 97.4 0.0001 2.2E-09 52.9 2.0 35 28-62 15-49 (213)
473 PRK06217 hypothetical protein; 97.4 0.00017 3.7E-09 50.6 3.1 22 40-61 3-24 (183)
474 cd03292 ABC_FtsE_transporter F 97.4 8.3E-05 1.8E-09 53.3 1.6 35 28-62 17-51 (214)
475 PRK14738 gmk guanylate kinase; 97.4 0.00023 4.9E-09 51.0 3.8 27 35-61 10-36 (206)
476 PRK01889 GTPase RsgA; Reviewed 97.4 0.00013 2.8E-09 56.6 2.7 25 38-62 195-219 (356)
477 cd01129 PulE-GspE PulE/GspE Th 97.4 0.0014 3.1E-08 48.7 8.1 81 40-123 82-166 (264)
478 cd03224 ABC_TM1139_LivF_branch 97.4 0.00012 2.5E-09 52.9 2.2 35 28-62 16-50 (222)
479 cd03219 ABC_Mj1267_LivG_branch 97.4 0.00013 2.9E-09 53.1 2.5 35 28-62 16-50 (236)
480 PRK15093 antimicrobial peptide 97.4 0.00028 6.1E-09 54.2 4.4 36 28-63 23-58 (330)
481 COG1124 DppF ABC-type dipeptid 97.3 0.00015 3.3E-09 52.7 2.7 37 26-62 21-57 (252)
482 cd03111 CpaE_like This protein 97.3 0.0019 4.1E-08 41.2 7.6 98 44-148 6-106 (106)
483 TIGR03608 L_ocin_972_ABC putat 97.3 0.0002 4.3E-09 51.1 3.3 34 29-62 15-48 (206)
484 TIGR03796 NHPM_micro_ABC1 NHPM 97.3 0.00014 3.1E-09 61.1 2.9 36 27-62 494-529 (710)
485 cd03258 ABC_MetN_methionine_tr 97.3 0.00011 2.4E-09 53.5 1.9 35 28-62 21-55 (233)
486 TIGR03263 guanyl_kin guanylate 97.3 0.00019 4E-09 50.1 3.0 23 40-62 3-25 (180)
487 cd02042 ParA ParA and ParB of 97.3 0.0018 4E-08 40.9 7.4 80 41-128 2-83 (104)
488 cd03260 ABC_PstB_phosphate_tra 97.3 9.3E-05 2E-09 53.6 1.6 36 27-62 15-50 (227)
489 PRK06731 flhF flagellar biosyn 97.3 0.00081 1.8E-08 50.2 6.5 24 37-60 74-97 (270)
490 TIGR01978 sufC FeS assembly AT 97.3 0.00014 3E-09 53.2 2.4 34 28-61 16-49 (243)
491 KOG0469|consensus 97.3 0.0015 3.3E-08 52.3 8.3 113 34-151 15-162 (842)
492 TIGR02211 LolD_lipo_ex lipopro 97.3 9.5E-05 2.1E-09 53.3 1.5 35 28-62 21-55 (221)
493 cd02023 UMPK Uridine monophosp 97.3 0.00017 3.6E-09 51.2 2.7 21 41-61 2-22 (198)
494 PRK00300 gmk guanylate kinase; 97.3 0.00023 5E-09 50.7 3.5 27 36-62 3-29 (205)
495 cd03266 ABC_NatA_sodium_export 97.3 0.00012 2.6E-09 52.7 2.0 36 27-62 20-55 (218)
496 PRK14530 adenylate kinase; Pro 97.3 0.0002 4.4E-09 51.5 3.2 22 39-60 4-25 (215)
497 cd03254 ABCC_Glucan_exporter_l 97.3 0.00015 3.2E-09 52.6 2.5 36 27-62 18-53 (229)
498 cd03293 ABC_NrtD_SsuB_transpor 97.3 0.00021 4.6E-09 51.5 3.3 35 28-62 20-54 (220)
499 PRK11248 tauB taurine transpor 97.3 0.0001 2.2E-09 54.6 1.6 35 28-62 17-51 (255)
500 cd03269 ABC_putative_ATPase Th 97.3 0.00022 4.7E-09 51.1 3.3 33 30-62 18-50 (210)
No 1
>KOG0084|consensus
Probab=99.96 E-value=1.1e-28 Score=169.81 Aligned_cols=123 Identities=25% Similarity=0.417 Sum_probs=106.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEE--EEEe--CCeEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK--SVQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
-..-+||+++|++|||||.|+.++..+. ...+..|+|+.+. ++.. ...++++|||+||++|+.....||+.+|+|
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi 85 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 85 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence 3457999999999999999999999887 5567788886654 4444 447899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAG 158 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~ 158 (162)
|+|||+++.+||+.+..|+.++.+... .++|.++||||+|+.+.+..+
T Consensus 86 i~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~ 133 (205)
T KOG0084|consen 86 IFVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVS 133 (205)
T ss_pred EEEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecC
Confidence 999999999999999999999877654 578999999999998876543
No 2
>KOG0092|consensus
Probab=99.96 E-value=1.8e-28 Score=168.08 Aligned_cols=123 Identities=24% Similarity=0.456 Sum_probs=107.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCc-cCCcceeEEE--EEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISH-ITPTQGFNIK--SVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
....+|++++|+.++|||||+.++..+++.. ..||+|..+. ++..++ .++.||||+|+++|..+-+.||++++++
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 3568999999999999999999999888665 4888885544 444444 7888999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAG 158 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~ 158 (162)
|+|||+++.+||..+..|+.+.....+ +++-+.+||||+||.+.+..+
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~ 129 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVE 129 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhccccc
Confidence 999999999999999999999888766 778899999999999976654
No 3
>KOG0094|consensus
Probab=99.95 E-value=1.1e-27 Score=164.44 Aligned_cols=124 Identities=21% Similarity=0.419 Sum_probs=109.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEE--EEEe--CCeEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK--SVQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
.-+.+|++++|+.+|||||||.++++.. ...+.+|+|+.+. ++.. ..+++++|||+||++|+.+.+.|++++.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 3345999999999999999999999988 5568899997654 4444 348899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAG 158 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~ 158 (162)
++|||+++..+|+....|+....+.....++-|++||||.||.+.+...
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs 147 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVS 147 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhh
Confidence 9999999999999999999999998876679999999999999987654
No 4
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.95 E-value=1.7e-27 Score=166.43 Aligned_cols=121 Identities=49% Similarity=0.833 Sum_probs=105.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEEC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
...+||+++|++|||||||++++..+.+..+.||.+.....+......+.+||+||+..+...+..+++++|++++|+|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~ 90 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDS 90 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEEC
Confidence 34689999999999999999999877766677888877777777889999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 116 ADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++++++..+..|+..+++.....++|++||+||+|+.+..+
T Consensus 91 t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~ 131 (175)
T smart00177 91 NDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK 131 (175)
T ss_pred CCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC
Confidence 99999999999988887654445789999999999976543
No 5
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.95 E-value=1.3e-27 Score=166.04 Aligned_cols=120 Identities=52% Similarity=0.855 Sum_probs=105.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEEC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
.+.+||+++|++|||||||++++.......+.||.+.....+...+..+++||+||++++...++.+++++|++++|||+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~ 86 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDS 86 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeC
Confidence 45689999999999999999999887766677888877777777889999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 116 ADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+++.++..+..|+.+++......++|+++|+||+|+.+..
T Consensus 87 t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 126 (168)
T cd04149 87 ADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM 126 (168)
T ss_pred CchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC
Confidence 9999999998888888765444578999999999997543
No 6
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=2.4e-27 Score=166.54 Aligned_cols=122 Identities=52% Similarity=0.848 Sum_probs=107.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEEC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
.+.+||+++|++|||||||++++..+.+..+.||.+.....+...+..+++||+||++.+...+..+++++|++++|||+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~ 94 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeC
Confidence 55689999999999999999999877766678888888878888889999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 116 ADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
++++++..+..++.........+++|++||+||+|+.+..+.
T Consensus 95 s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~ 136 (181)
T PLN00223 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA 136 (181)
T ss_pred CcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCH
Confidence 999999998888887766544457999999999999876543
No 7
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.95 E-value=2.9e-27 Score=162.88 Aligned_cols=117 Identities=50% Similarity=0.853 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCCh
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADV 118 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~ 118 (162)
+||+++|++|||||||++++..+.+..+.||.+.....+..+...+.+||+||++++...+..+++++|++++|||++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999877766677888877777777889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 119 KRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
.++..+..++..+.......++|+++++||+|+.+..
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 117 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM 117 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC
Confidence 9999999888887765444578999999999997653
No 8
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=4.4e-27 Score=165.34 Aligned_cols=121 Identities=48% Similarity=0.843 Sum_probs=105.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEEC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
.+++||+++|++|||||||++++..+....+.||.+.....+..++..+.+||+||++.+...+..+++.+|++++|+|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~ 94 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDS 94 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence 44689999999999999999999877766677888887777888889999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 116 ADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++++++..+..++..++......++|++||+||.|+.+...
T Consensus 95 t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~ 135 (182)
T PTZ00133 95 NDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMS 135 (182)
T ss_pred CCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCC
Confidence 99999999888888876654445789999999999976543
No 9
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=9.7e-27 Score=161.45 Aligned_cols=118 Identities=37% Similarity=0.644 Sum_probs=105.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChh
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVK 119 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~ 119 (162)
+|+++|++|||||||++++.+.....+.||.+.....+..++..+.+||+||+..+...+..+++.+|++++|||++++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 48999999999999999999876667788988888888888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 120 RFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
++..+..|+..+.+.....++|+++|+||.|+.+.++.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~ 118 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLG 118 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCH
Confidence 99999999998877655568999999999999887643
No 10
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.95 E-value=1.4e-26 Score=161.32 Aligned_cols=121 Identities=61% Similarity=1.065 Sum_probs=106.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d 114 (162)
....++|+++|++|||||||++++.+.....+.++.+.....+..++..+.+||+||+..+...+..+++.+|++++|+|
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVD 90 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 34568999999999999999999998877777888887777777788999999999999998899999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 115 SADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
.+++.++.....|+..+.......++|+++|+||+|+.+..
T Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 131 (173)
T cd04154 91 SSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL 131 (173)
T ss_pred CCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC
Confidence 99999999988888887765444689999999999997654
No 11
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.95 E-value=1.7e-26 Score=160.44 Aligned_cols=116 Identities=43% Similarity=0.826 Sum_probs=103.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChh
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVK 119 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~ 119 (162)
||+++|++|||||||++++.+.....+.||.+.....+...+..+.+||+||+..+...+..+++.+|++++|+|.++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 68999999999999999999887666788888777778888899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 120 RFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
++..+..|+..+.......+.|++||+||+|+.+..
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 116 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL 116 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCC
Confidence 999999999988876545578999999999997653
No 12
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.94 E-value=2.2e-26 Score=160.83 Aligned_cols=125 Identities=47% Similarity=0.877 Sum_probs=115.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d 114 (162)
..+..+|+++|+.||||||+++++..+....+.||.|.+...+...+.++.+||++|+..++..|+.+++.+|++++|+|
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvD 90 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVD 90 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEe
Confidence 47899999999999999999999998887778999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCCC
Q psy689 115 SADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAGY 159 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~ 159 (162)
.++.+.+..+...+..++......++|++|++||+|+.+.....+
T Consensus 91 ssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~ 135 (175)
T PF00025_consen 91 SSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEE 135 (175)
T ss_dssp TTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHH
T ss_pred cccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhH
Confidence 999999999999999988876667899999999999988765443
No 13
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.94 E-value=4.5e-26 Score=160.16 Aligned_cols=117 Identities=19% Similarity=0.263 Sum_probs=98.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE-EEEe--CCeEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK-SVQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
.+..+||+++|++|+|||||++++..+.+ ..+.||.+..+. .+.. ....+.+|||+|++.+...++.+++++|+++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 35678999999999999999999998874 456777765443 3333 3478999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 111 YVIDSADVKRFEES-GFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 111 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
+|||++++++|+.+ ..|+..+.+.. ++.|+++||||+|+.+
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~ 123 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRT 123 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhc
Confidence 99999999999997 67877776643 4789999999999965
No 14
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.94 E-value=7.8e-26 Score=161.10 Aligned_cols=117 Identities=21% Similarity=0.384 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEE--EEEe-------CCeEEEEEeCCCCCCChhhHHhhcccCCE
Q psy689 39 LRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK--SVQS-------EGFKLNVWDIGGQRKIRPYWRNYFDNTDI 108 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~--~~~~-------~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 108 (162)
+||+++|++|||||||++++.++. ...+.+|.+.... .+.. ..+.+++||++|++.+...+..+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999887 3456677775432 2332 34789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhCC------------------CCCCCcEEEEEeCCCCCCCC
Q psy689 109 LIYVIDSADVKRFEESGFELHELLSDE------------------KLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~iivv~nK~Dl~~~~ 155 (162)
+++|||++++++|+.+..|+.++.+.. ...++|++|||||+|+.+.+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 999999999999999999998887632 12468999999999997764
No 15
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.94 E-value=5.1e-26 Score=161.07 Aligned_cols=116 Identities=22% Similarity=0.336 Sum_probs=96.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE-EEEe--CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK-SVQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
.+||+++|++|||||||+.++..+.+ ..+.||.+..+. .+.. ....+.+|||+|++++..+++.+++++|++++||
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvy 82 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICF 82 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEE
Confidence 58999999999999999999998875 567788875543 2223 3478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHH-HHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 114 DSADVKRFEESGF-ELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 114 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|++++++|+.+.. |...+.... +++|++|||||.|+.+..
T Consensus 83 dit~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~ 123 (191)
T cd01875 83 SIASPSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDLRNDA 123 (191)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhhhcCh
Confidence 9999999999974 665554432 579999999999997643
No 16
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.94 E-value=1.8e-25 Score=157.97 Aligned_cols=119 Identities=25% Similarity=0.401 Sum_probs=99.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
...+||+++|+.|||||||+.++..+.+ ..+.++.+... ..+..++ +.+++||++|++++..+++.+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 3568999999999999999999998764 34445655443 3444444 78899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|||++++.+|+.+..|+.++.... +++|++|||||.|+.+.+.
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~ 127 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQ 127 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccC
Confidence 9999999999999999998886653 5899999999999976543
No 17
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.94 E-value=1.5e-25 Score=159.78 Aligned_cols=116 Identities=20% Similarity=0.398 Sum_probs=96.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEEEE
Q psy689 40 RILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d 114 (162)
.|+++|+.|||||||++++..+.+ ..+.+|.+..+ ..+..++ ..+.+|||+|++++..++..+++.+|++++|||
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD 81 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD 81 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence 589999999999999999998875 34567766443 3455554 788999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 115 SADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++++++|+.+..|+..+.+. ...++|+++||||+|+.+.+.
T Consensus 82 vtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~ 122 (202)
T cd04120 82 ITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDRE 122 (202)
T ss_pred CcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccc
Confidence 99999999999888765543 335799999999999976443
No 18
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.94 E-value=6.8e-26 Score=156.79 Aligned_cols=115 Identities=43% Similarity=0.765 Sum_probs=101.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChh
Q psy689 41 ILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVK 119 (162)
Q Consensus 41 v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~ 119 (162)
|+++|++|||||||++++.+.. ...+.||.+.....+...+.++.+||+||+.++...+..+++.+|++++|||.+++.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 6899999999999999999875 455678888777777788899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 120 RFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
++..+..|+..+.... +++|+++|+||+|+.+.+..
T Consensus 82 s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~ 117 (164)
T cd04162 82 RLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSV 117 (164)
T ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCH
Confidence 9999888888876543 58999999999999876654
No 19
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.94 E-value=9e-26 Score=157.54 Aligned_cols=119 Identities=45% Similarity=0.740 Sum_probs=105.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSA 116 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~ 116 (162)
..++|+++|++|+|||||++++..+....+.|+.+.+...+..++.++.+||+||+..+...+..+++.+|++++|+|++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s 93 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDST 93 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECC
Confidence 46899999999999999999999888666788888888888888999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 117 DVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+++++.....++..+.+.....++|+++++||+|+.+..
T Consensus 94 ~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~ 132 (174)
T cd04153 94 DRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM 132 (174)
T ss_pred CHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC
Confidence 999998888888888766545679999999999997643
No 20
>KOG0098|consensus
Probab=99.94 E-value=3.6e-26 Score=156.01 Aligned_cols=123 Identities=19% Similarity=0.316 Sum_probs=106.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEE----EEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK----SVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~----~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
...+|++++|+.|||||+|+.++.... .+.+..|.|+.+. ++.....++++|||+|++.++.....||+.+.++|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 357899999999999999999999887 4455677886654 34445588999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAGY 159 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~ 159 (162)
+|||++++++|..+..|+.++.++. .++.-++++|||+||...+..++
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~ 131 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSK 131 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccH
Confidence 9999999999999999999998875 36899999999999998886654
No 21
>KOG0073|consensus
Probab=99.94 E-value=8.5e-26 Score=151.10 Aligned_cols=135 Identities=55% Similarity=0.931 Sum_probs=120.5
Q ss_pred HHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcc
Q psy689 25 LAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFD 104 (162)
Q Consensus 25 ~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~ 104 (162)
..+++.... .+++++|+++|..||||||+++++.+.....++||.|+...++..+++++++||.+|+...++.|+.||.
T Consensus 4 lsilrk~k~-kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfe 82 (185)
T KOG0073|consen 4 LSILRKQKL-KEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFE 82 (185)
T ss_pred HHHHHHHHh-hhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhh
Confidence 344444332 3459999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCCCc
Q psy689 105 NTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAGYH 160 (162)
Q Consensus 105 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~ 160 (162)
.+|++++|+|.+++..++.....+...+......+.|++|+.||.|+.++-...++
T Consensus 83 stdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i 138 (185)
T KOG0073|consen 83 STDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEI 138 (185)
T ss_pred ccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHH
Confidence 99999999999999999998888888777666678999999999999987766654
No 22
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.94 E-value=7.7e-26 Score=157.67 Aligned_cols=119 Identities=21% Similarity=0.290 Sum_probs=98.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE-EEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK-SVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
.+||+++|++|||||||++++..+.+ ..+.|+.+..+. .+..++ ..+.+||+||+.++..++..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 57999999999999999999998875 356677664433 344444 67899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
|++++.+|+.+..|+..+.+....+++|+++|+||+|+.+.+.
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~ 124 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ 124 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc
Confidence 9999999999988776665543335799999999999976544
No 23
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.94 E-value=1.4e-25 Score=154.30 Aligned_cols=118 Identities=19% Similarity=0.313 Sum_probs=97.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeE-EEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFN-IKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~-~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
.+||+++|++|||||||++++..+.+ ..+.|+.+.. ...+..++ ..+.+|||||++++...+..+++.+|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 37999999999999999999998763 3445655422 23344444 67889999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|++++++|+.+..|+..+.+.....+.|+++|+||+|+.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 122 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDER 122 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 999999999999998888765544689999999999997643
No 24
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=7.9e-26 Score=159.22 Aligned_cols=124 Identities=40% Similarity=0.662 Sum_probs=107.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEEC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
.+.++|+++|++|||||||++++.+.....+.|+.+.+...+..++.++.+||+||+..+...+..++..+|++++|+|+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~ 94 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDA 94 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence 55699999999999999999999988766667777777777777889999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCCC
Q psy689 116 ADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAGY 159 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~ 159 (162)
++++++.....++..+.+.....+.|+++|+||+|+.+..+.++
T Consensus 95 ~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~ 138 (184)
T smart00178 95 YDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDE 138 (184)
T ss_pred CcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHH
Confidence 99999988888888877654446789999999999976655443
No 25
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.94 E-value=1.8e-25 Score=161.16 Aligned_cols=114 Identities=24% Similarity=0.331 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCCh
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADV 118 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~ 118 (162)
+||+++|.+|||||||++++..+.+..+.++.+..+.........+.+||++|++.+...+..+++.+|++++|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999876677888776665566678899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 119 KRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
++|..+..|+..+.+.. ..++|++|||||+|+.+
T Consensus 81 ~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 81 QSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTE 114 (220)
T ss_pred HHHHHHHHHHHHHHHhc-CCCCcEEEEEECccccc
Confidence 99999999888876643 35789999999999976
No 26
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=8.8e-26 Score=158.24 Aligned_cols=114 Identities=19% Similarity=0.254 Sum_probs=95.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE-EEEe--CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK-SVQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
++||+++|++|||||||++++.++.+ ..+.||.+..+. .+.. ....+.+|||+|++.+...++.+++.+|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 47999999999999999999998874 456677765432 3333 3478899999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 114 DSADVKRFEES-GFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 114 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
|++++++|+.+ ..|+..+.+.. +++|+++||||+|+.+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~ 119 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRT 119 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhc
Confidence 99999999996 67877776654 4789999999999965
No 27
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.94 E-value=1e-25 Score=154.77 Aligned_cols=116 Identities=54% Similarity=0.937 Sum_probs=100.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChh
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVK 119 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~ 119 (162)
||+++|++++|||||++++..+....+.|+.+.+...+..++.++++||+||+..+...++.++..+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998777666678877777777778899999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 120 RFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
++.....++..+++.....++|+++|+||+|+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~ 116 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL 116 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC
Confidence 888777777766655444579999999999997654
No 28
>PTZ00369 Ras-like protein; Provisional
Probab=99.94 E-value=2e-25 Score=157.71 Aligned_cols=120 Identities=19% Similarity=0.291 Sum_probs=100.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE-EEE--eCCeEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK-SVQ--SEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~-~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
...+||+++|++|||||||++++.++.+ ..+.|+.+..+. .+. .....+.+|||||++++..++..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 3468999999999999999999998774 455676665443 233 334678899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|||++++++|+.+..|+..+.+.....+.|+++|+||+|+.+.+
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~ 126 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSER 126 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 99999999999999998888766555689999999999986544
No 29
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.94 E-value=2e-25 Score=156.22 Aligned_cols=120 Identities=20% Similarity=0.345 Sum_probs=99.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEE--EEEe------------CCeEEEEEeCCCCCCChhhHHh
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK--SVQS------------EGFKLNVWDIGGQRKIRPYWRN 101 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~--~~~~------------~~~~~~l~D~~G~~~~~~~~~~ 101 (162)
..+||+++|++|||||||++++.+.. ...+.++.+.... .+.. ....+.+||+||++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 46899999999999999999998876 3445666664432 2222 2378999999999999999999
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 102 YFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 102 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+++.+|++++|||++++++|..+..|+..+.......+.|+++|+||+|+.+.+.
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~ 137 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ 137 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCc
Confidence 9999999999999999999999999998887654445789999999999976543
No 30
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.94 E-value=1.4e-25 Score=156.80 Aligned_cols=114 Identities=21% Similarity=0.321 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE-EEEe--CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK-SVQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d 114 (162)
+|++++|++|+|||||+.++..+.+ ..+.||.+..+. .+.. ..+++.+|||+|++++...+..+++++|++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 6899999999999999999998885 457788775443 2333 34789999999999999999999999999999999
Q ss_pred CCChhhHHHH-HHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 115 SADVKRFEES-GFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 115 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++++++|+.+ ..|+..+.+.. +++|++|||||+|+.+.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~ 120 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDD 120 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccC
Confidence 9999999998 57888776543 47999999999999764
No 31
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.94 E-value=2.7e-25 Score=155.37 Aligned_cols=114 Identities=21% Similarity=0.321 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE-EEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK-SVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d 114 (162)
+||+++|++|+|||||++++..+.+ ..+.||.+..+. .+..++ +++.+||++|++++...+..+++.+|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 6899999999999999999998875 567788775543 344444 788999999999999999889999999999999
Q ss_pred CCChhhHHHHHH-HHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 115 SADVKRFEESGF-ELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 115 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++++++|+.+.. |+..+.... +++|+++||||+|+.+.
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~ 120 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDD 120 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhC
Confidence 999999999875 666655432 47899999999999764
No 32
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.93 E-value=1.8e-25 Score=153.35 Aligned_cols=116 Identities=54% Similarity=0.960 Sum_probs=105.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChh
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVK 119 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~ 119 (162)
||+++|++|||||||++++.+.....+.++.+.+...+......+.+||+||+..+...+..++..+|++++|+|+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998777888888888888888899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 120 RFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
++.....++..+.......+.|+++|+||+|+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 116 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL 116 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc
Confidence 999998898888776555789999999999998755
No 33
>KOG0078|consensus
Probab=99.93 E-value=1.6e-25 Score=155.95 Aligned_cols=123 Identities=24% Similarity=0.419 Sum_probs=104.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE--EEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK--SVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
...-+|++++|++|||||+++.++..+.+ ..+..|.|+.+. ++..++ ..+++|||+||+++......|++.++++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 34579999999999999999999988774 445567776544 455544 7889999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAG 158 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~ 158 (162)
++|||+++..+|+.+..|+..+.++.. .++|+++||||+|+.+.+...
T Consensus 89 ~LvyDitne~Sfeni~~W~~~I~e~a~-~~v~~~LvGNK~D~~~~R~V~ 136 (207)
T KOG0078|consen 89 LLVYDITNEKSFENIRNWIKNIDEHAS-DDVVKILVGNKCDLEEKRQVS 136 (207)
T ss_pred EEEEEccchHHHHHHHHHHHHHHhhCC-CCCcEEEeecccccccccccc
Confidence 999999999999999998888776654 589999999999999966543
No 34
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.93 E-value=4.4e-25 Score=152.33 Aligned_cols=118 Identities=19% Similarity=0.298 Sum_probs=98.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE-EEEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI-KSVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~-~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
++||+++|++|||||||++++..+.+ ..+.++.+... ..+..+ ...+.+|||||+..+...+..+++.+|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 46999999999999999999987763 34556665433 234444 467789999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|.+++.+|+.+..|+..+.......+.|+++|+||+|+.+..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 122 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER 122 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhcc
Confidence 999999999999998888775545689999999999997643
No 35
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.93 E-value=3.5e-25 Score=153.23 Aligned_cols=118 Identities=19% Similarity=0.335 Sum_probs=97.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE--EEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK--SVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
.+||+++|++|||||||++++.++.+ ..+.++.+.... .+..+ ...+.+||+||+..+...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 37999999999999999999998874 334556664443 23333 46889999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
||++++++|+.+..|+..+.... .++.|+++|+||+|+.+.+.
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~ 124 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRD 124 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccC
Confidence 99999999999999988775543 25789999999999977654
No 36
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.93 E-value=1.9e-25 Score=153.50 Aligned_cols=116 Identities=41% Similarity=0.666 Sum_probs=99.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--CCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCC
Q psy689 40 RILLLGLDNAGKTTILKTLASED--ISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD 117 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~ 117 (162)
+|+++|++|||||||++++.+.. ...+.|+.+.....+...+.++.+||+||+..+...+..+++.+|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 48999999999999999999874 4567788887777777788999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhCCC--CCCCcEEEEEeCCCCCCCC
Q psy689 118 VKRFEESGFELHELLSDEK--LTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~ 155 (162)
+.++..+..|+..+.+... ..++|+++|+||+|+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~ 120 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL 120 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC
Confidence 9998888888877765432 2479999999999997654
No 37
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=5.8e-25 Score=156.77 Aligned_cols=115 Identities=30% Similarity=0.391 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEeC---CeEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQSE---GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
+||+++|++|||||||++++.++.+ ..+.||.+..+ ..+... ...+.+|||||++.+...++.+++.+|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999998873 44677777543 334443 47889999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCC---CCCCCcEEEEEeCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDE---KLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iivv~nK~Dl~~ 153 (162)
||++++++|+.+..|+..+.... ...++|+++|+||+|+.+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~ 124 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK 124 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc
Confidence 99999999999988887765432 235789999999999974
No 38
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.93 E-value=2.4e-25 Score=160.63 Aligned_cols=116 Identities=17% Similarity=0.257 Sum_probs=94.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE-EEEe--CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK-SVQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
++||+++|++|||||||++++..+.+ ..+.||.+..+. .+.. ....+.+|||+|++.|...++.+++++|++++||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 37999999999999999999998774 456777765543 3333 3478899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
|++++++|+.+..+|...+... .+++|++|||||+|+.+.
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTD 120 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccc
Confidence 9999999999865444433332 257999999999999764
No 39
>KOG0080|consensus
Probab=99.93 E-value=7.5e-26 Score=151.08 Aligned_cols=124 Identities=25% Similarity=0.411 Sum_probs=106.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCc-ceeEEE----EEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPT-QGFNIK----SVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~-~~~~~~----~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
.-..+||+++|++|+|||||+-++....+....|+ +|..++ .+.....++.||||+|+++|+.+.+.||+.+.++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 34469999999999999999999998887776665 775544 3444568899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAG 158 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~ 158 (162)
++|||++++++|..+..|+.++-...-.+++-.++||||.|...++..+
T Consensus 88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~ 136 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVD 136 (209)
T ss_pred EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhccccc
Confidence 9999999999999999999998888777889999999999988655443
No 40
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.93 E-value=3.4e-25 Score=156.42 Aligned_cols=119 Identities=43% Similarity=0.747 Sum_probs=105.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEEC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
.++.+|+++|++|||||||++++.+.....+.|+.+.....+..++.++.+||+||+..+...+..+++.+|++++|+|+
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~ 96 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDA 96 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEEC
Confidence 56799999999999999999999988876777888877778888889999999999999988888999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 116 ADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++..++.....++..+.+.....+.|+++|+||+|+.+.
T Consensus 97 ~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~ 135 (190)
T cd00879 97 ADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA 135 (190)
T ss_pred CcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC
Confidence 999999888888888876555567999999999999754
No 41
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.93 E-value=3.4e-25 Score=155.87 Aligned_cols=118 Identities=46% Similarity=0.823 Sum_probs=98.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEe-----CCeEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQS-----EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
..+||+++|++|||||||++++.+..+....|+.+........ ....+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 3689999999999999999999887765556777655443332 45889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
|+|+++++++..+..|+..+.......+.|+++|+||+|+.+.
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~ 124 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA 124 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc
Confidence 9999999888888888877776544457999999999999754
No 42
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.93 E-value=8.6e-25 Score=152.13 Aligned_cols=116 Identities=23% Similarity=0.444 Sum_probs=97.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE--EEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEE
Q psy689 40 RILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK--SVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d 114 (162)
||+++|++|||||||++++..+.+ ..+.|+.+..+. .+... ...+++||+||++++...+..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 799999999999999999998874 466788775543 33333 3689999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 115 SADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+++++++..+..|+..+++.......|+++|+||.|+....
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~ 122 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA 122 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc
Confidence 99999999999999888765443467899999999996543
No 43
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.93 E-value=8.3e-25 Score=150.71 Aligned_cols=118 Identities=20% Similarity=0.339 Sum_probs=96.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcce-eEEEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDI-SHITPTQG-FNIKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~-~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
++||+++|++|||||||++++..+.+ ..+.++.+ .....+..++ ..+++||+||++++...+..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999998874 33445544 2223444443 56889999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|++++++|..+..|+..+.+.....++|+++|+||+|+....
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~ 122 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESER 122 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcC
Confidence 999999999999998888776544689999999999986543
No 44
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.93 E-value=7.2e-25 Score=150.92 Aligned_cols=118 Identities=19% Similarity=0.294 Sum_probs=96.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEE-EEEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNI-KSVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~-~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
.+||+++|++|+|||||++++.+.. ...+.++.+... .....+ ...+.+|||||+.++...+..+++.+|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 5799999999999999999998776 334445544322 223333 367889999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|++++.+|..+..|+..+.+.....+.|+++|+||+|+....
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~ 123 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQR 123 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccc
Confidence 999999999999998887765444588999999999997654
No 45
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.93 E-value=8.3e-25 Score=150.03 Aligned_cols=116 Identities=22% Similarity=0.344 Sum_probs=96.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE-EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI-KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
.+||+++|++|||||||++++.++.+ ..+.|+.+... ..+..++ ..+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 36899999999999999999998773 44556655332 2333443 56889999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
|++++.+|+.+..|+..+.+.....+.|+++|+||+|+.+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999999999988888887765556899999999999976
No 46
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.93 E-value=8.9e-25 Score=151.45 Aligned_cols=114 Identities=21% Similarity=0.377 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEEEEEe----CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIKSVQS----EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
+||+++|++|||||||++++..+. ...+.++.+........ ....+.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 589999999999999999998766 44567777766544332 3478999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
|+++++++..+..|+..+.+... ++|+++|+||+|+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~~~ 119 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIKDR 119 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcccc
Confidence 99999999999999888877653 8999999999999743
No 47
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.93 E-value=1e-24 Score=157.52 Aligned_cols=117 Identities=19% Similarity=0.353 Sum_probs=100.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEEEEEe----CCeEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIKSVQS----EGFKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
....+||+++|++|||||||++++..+.+ ..+.++.+........ ....+.+|||+|++++...+..+++.+|++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 36789999999999999999999887764 4567888766544332 347999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
++|||++++++|..+..|+..+.+.. .+.|+++||||+|+.+
T Consensus 90 ilvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN 131 (219)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhh
Confidence 99999999999999999988887653 4799999999999964
No 48
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=7.5e-25 Score=158.92 Aligned_cols=115 Identities=19% Similarity=0.286 Sum_probs=95.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEE-EEEe--CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK-SVQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
..+||+++|++|||||||++++..+. ...+.||.+..+. .+.. ....+.+|||+|++.+...++.+++.+|++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 46899999999999999999999876 3456677765443 2333 347899999999999999999999999999999
Q ss_pred EECCChhhHHHH-HHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 113 IDSADVKRFEES-GFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 113 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
||++++++|+.+ ..|+..+.... ++.|+++||||+|+.+
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~ 131 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRT 131 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccccc
Confidence 999999999985 67877776543 4789999999999964
No 49
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.93 E-value=5.3e-25 Score=151.18 Aligned_cols=115 Identities=50% Similarity=0.879 Sum_probs=99.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeC-CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCCh
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSE-GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADV 118 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~ 118 (162)
+|+++|++|||||||++++.+.....+.|+.+.....+... ...+.+||+||+..+...+..+++.+|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 58999999999999999999988666678887766665553 57899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 119 KRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
.++.....|+..+++.....+.|+++|+||+|+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA 116 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC
Confidence 999999888888877654468999999999999654
No 50
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.93 E-value=1.5e-24 Score=150.02 Aligned_cols=117 Identities=22% Similarity=0.378 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE--EEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK--SVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
+||+++|++|||||||++++.+..+ ..+.|+.+..+. .+... ...+.+||++|++++...+..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 6999999999999999999998874 445677664432 33333 378999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
|.+++++++.+..|+..+.+.. ....|+++|+||+|+.+.+.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~ 123 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERV 123 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccc
Confidence 9999999999999988875543 24789999999999976543
No 51
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.93 E-value=7.6e-25 Score=151.06 Aligned_cols=115 Identities=23% Similarity=0.412 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEE--EEEe--CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK--SVQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
+||+++|++|||||||++++.+.. ...+.|+.+..+. .+.. ....+++|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999887 4456677665432 3333 3478899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCC----CCCcEEEEEeCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKL----TGVPLLVYANKQDLLG 153 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~----~~~~iivv~nK~Dl~~ 153 (162)
|++++++++.+..|+..+.+.... .+.|+++|+||+|+.+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence 999999999999998888765432 5799999999999974
No 52
>KOG0087|consensus
Probab=99.93 E-value=2.4e-25 Score=154.76 Aligned_cols=124 Identities=22% Similarity=0.339 Sum_probs=106.7
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEEE--EEe--CCeEEEEEeCCCCCCChhhHHhhcccCCE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIKS--VQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDI 108 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 108 (162)
.-..-+|++++|++|+|||-|+.++..++ .....+|+|+.+.+ +.. ...+.+||||+||++|+.....||+.+.+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 34557999999999999999999999888 44567888987765 333 44788999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy689 109 LIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAG 158 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~ 158 (162)
+++|||++.+.+|+.+..|+.++..+. .+++++++||||+||..-+...
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdha-d~nivimLvGNK~DL~~lraV~ 138 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLNHLRAVP 138 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhcC-CCCeEEEEeecchhhhhccccc
Confidence 999999999999999999999977654 4699999999999999866543
No 53
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=2e-24 Score=149.27 Aligned_cols=119 Identities=29% Similarity=0.433 Sum_probs=97.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCccee--EEEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDIS-HITPTQGF--NIKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~~-~~~~~~~~--~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
..+||+++|++|||||||++++..+.+. .+.++.+. ....+...+ ..+.+||+||+..+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 3589999999999999999999877643 34455553 334455555 688999999999999989999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~ 125 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQRE 125 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccc
Confidence 999999999999988988876643 25789999999999986653
No 54
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.93 E-value=2.4e-24 Score=148.56 Aligned_cols=117 Identities=21% Similarity=0.413 Sum_probs=97.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
+||+++|++|||||||++++..+.+ ..+.++.+... ..+...+ ..+.+||++|+.++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 4899999999999999999998874 34567777543 3444444 67899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
|++++++|+.+..|+..+.... ..+.|+++|+||.|+.+.+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~ 122 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQ 122 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccC
Confidence 9999999999999988776543 24789999999999976654
No 55
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.93 E-value=2.2e-24 Score=149.90 Aligned_cols=119 Identities=24% Similarity=0.455 Sum_probs=97.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCcceeEE--EEEEeCC--eEEEEEeCCCCCCCh-hhHHhhcccCCEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDIS-HITPTQGFNI--KSVQSEG--FKLNVWDIGGQRKIR-PYWRNYFDNTDILIY 111 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~l~D~~G~~~~~-~~~~~~~~~~d~vl~ 111 (162)
.+||+++|++|||||||++++....+. .+.++.+... ..+..++ ..+.+||++|+.++. ..+..+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 579999999999999999999887743 4556665433 3344444 789999999998886 467888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
|||++++++|..+..|...+.......++|+++|+||+|+.+.+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 126 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQ 126 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcC
Confidence 999999999999999988887765556899999999999987654
No 56
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.92 E-value=2.1e-24 Score=148.75 Aligned_cols=117 Identities=21% Similarity=0.325 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeE-EEEEEe--CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFN-IKSVQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~-~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d 114 (162)
+||+++|++|||||||++++.+... ..+.++.+.. ...+.. ....+.+|||||+.++...+..+++.+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 4899999999999999999998763 2334444422 223333 34788999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 115 SADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
++++++++.+..|+..+.+.....+.|+++|+||+|+...+
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~ 121 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER 121 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 99999999999988887765544578999999999997644
No 57
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.92 E-value=4.2e-24 Score=148.02 Aligned_cols=118 Identities=24% Similarity=0.425 Sum_probs=97.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEE--EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNI--KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
..+||+++|++|+|||||++++.+.. ...+.++.+... ..+...+ ..+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 35899999999999999999999887 344566666543 3344443 678999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|||++++++|+.+..|+..+.+.. ..++|+++|+||+|+.+.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~ 124 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKR 124 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECccccccc
Confidence 999999999999999888876643 3578999999999998644
No 58
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.92 E-value=3e-24 Score=150.95 Aligned_cols=113 Identities=23% Similarity=0.418 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
+|++++|++|+|||||++++..+.+ ..+.||.+..+ ..+..++ ..+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999988874 44778887654 3455444 78899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
|++++++|..+..|+..+.+... ...| ++||||+|+..
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~ 118 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFA 118 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccc
Confidence 99999999999999888776533 3466 67899999964
No 59
>KOG0070|consensus
Probab=99.92 E-value=3.6e-25 Score=151.27 Aligned_cols=128 Identities=50% Similarity=0.834 Sum_probs=120.1
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
.....+.+|+++|--++||||++.+|..++...+.||.|++.+++...+.++++||.+|+.++++.|+.|++..+++++|
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfV 91 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFV 91 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEE
Confidence 34567899999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCCCc
Q psy689 113 IDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAGYH 160 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~ 160 (162)
+|.++++.+..+...+..++....+.+.|+++++||.|+.+..+..|+
T Consensus 92 vDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei 139 (181)
T KOG0070|consen 92 VDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEI 139 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHH
Confidence 999999999999999999998887789999999999999999887664
No 60
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.92 E-value=1.3e-24 Score=150.20 Aligned_cols=116 Identities=50% Similarity=0.826 Sum_probs=99.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------CCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 40 RILLLGLDNAGKTTILKTLASED-------ISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
+|+++|++|+|||||++++.+.. ...+.++.+.....+..++..+.+||+||+..+...+..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 58999999999999999987542 23446677777777888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+|+++++++.....++..+.+.....+.|+++|+||+|+....
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~ 123 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL 123 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC
Confidence 9999988888888888888776555689999999999987654
No 61
>PLN00023 GTP-binding protein; Provisional
Probab=99.92 E-value=4.2e-24 Score=159.91 Aligned_cols=121 Identities=19% Similarity=0.362 Sum_probs=100.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEe---------------CCeEEEEEeCCCCCCC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQS---------------EGFKLNVWDIGGQRKI 95 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~---------------~~~~~~l~D~~G~~~~ 95 (162)
.....+||+++|+.|||||||++++.++.+ ..+.+|.|..+ ..+.. ..+.++||||+|++.+
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 345579999999999999999999998864 45677887654 33333 2367999999999999
Q ss_pred hhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCC-----------CCCCcEEEEEeCCCCCCC
Q psy689 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEK-----------LTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 96 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~iivv~nK~Dl~~~ 154 (162)
..++..+++.++++|+|||++++.+|+.+..|+..+..... ..++|++|||||+||...
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 99999999999999999999999999999999988876531 125899999999999764
No 62
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.92 E-value=1.8e-24 Score=151.04 Aligned_cols=114 Identities=20% Similarity=0.318 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE-EEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK-SVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d 114 (162)
+|++++|++|||||||+.++..+.+ ..+.|+.+..+. .+..+ ..++.+|||+|++.+...++.+++++|++++|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 6999999999999999999998774 556677654332 33333 3788999999999999999999999999999999
Q ss_pred CCChhhHHHHHH-HHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 115 SADVKRFEESGF-ELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 115 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++++++|..+.. |+..+.... ++.|+++||||+|+.+.
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~ 120 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDD 120 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhccC
Confidence 999999999864 666555432 47999999999999653
No 63
>KOG0093|consensus
Probab=99.92 E-value=1.7e-24 Score=142.65 Aligned_cols=119 Identities=21% Similarity=0.351 Sum_probs=102.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEEEEEe----CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIKSVQS----EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
.+|++++|...+|||||+.++.... ...+-.|.|+.++.-+. +...+++|||.|+++++.....++++++++++|
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 5799999999999999999999887 45566777766553222 347899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
||+++.++|..+..|...|....+ .++|+++|+||||+.+++-.
T Consensus 101 yDitNeeSf~svqdw~tqIktysw-~naqvilvgnKCDmd~eRvi 144 (193)
T KOG0093|consen 101 YDITNEESFNSVQDWITQIKTYSW-DNAQVILVGNKCDMDSERVI 144 (193)
T ss_pred EecCCHHHHHHHHHHHHHheeeec-cCceEEEEecccCCccceee
Confidence 999999999999999888776654 58999999999999988754
No 64
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=2.5e-24 Score=154.62 Aligned_cols=119 Identities=24% Similarity=0.403 Sum_probs=98.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCcceeEEE--EEEe---CCeEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDIS-HITPTQGFNIK--SVQS---EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~--~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
.+||+++|++|||||||++++.+..+. .+.++.+..+. .+.. ....+.+||++|++.+...+..+++.+|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999988743 34566664432 3333 23789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
|||++++++|+.+..|+..+.+......+|++||+||+|+.....
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~ 126 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQ 126 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccc
Confidence 999999999999999999887765445688999999999977543
No 65
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.92 E-value=2.9e-24 Score=147.66 Aligned_cols=116 Identities=22% Similarity=0.427 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEe----CCeEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQS----EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
+||+++|++|+|||||++++.++.+ ..+.++.+..+ ..+.. ....+.+||+||++++...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 4899999999999999999998763 34566666544 22333 34789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
|||+++++++..+..|+..+.+.. .++|+++|+||+|+.....
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~ 123 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAV 123 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccC
Confidence 999999999999988887775543 4789999999999976544
No 66
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.92 E-value=4.3e-24 Score=153.81 Aligned_cols=118 Identities=26% Similarity=0.350 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEeC---CeEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQSE---GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
+||+++|++|||||||+++|.+..+ ..+.||.+... ..+... ...+.+||++|+..+...+..+++.+|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999998774 44667776443 334442 47899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCCC--CCCCcEEEEEeCCCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDEK--LTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~ 156 (162)
||++++++|+.+..|+..+.+... ..++|+++|+||+|+.+.+.
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~ 126 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT 126 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccc
Confidence 999999999999888888776532 24578999999999975543
No 67
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.92 E-value=3.4e-24 Score=149.00 Aligned_cols=120 Identities=82% Similarity=1.235 Sum_probs=105.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEEC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
.+.++++++|++|||||||++++.+.....+.++.+.+...+...+..+.+||+||+..+...+..+++.+|++++|+|+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~ 91 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDS 91 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeC
Confidence 44899999999999999999999998777778888888888888889999999999998888888899999999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 116 ADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
++..++.....++..........++|+++++||+|+.+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (173)
T cd04155 92 ADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA 131 (173)
T ss_pred CCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC
Confidence 9988888888888777765444579999999999997654
No 68
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.92 E-value=1.9e-24 Score=152.87 Aligned_cols=117 Identities=21% Similarity=0.292 Sum_probs=94.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE-EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEEEEC
Q psy689 40 RILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI-KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
||+++|++|||||||++++..+.+ ..+.++.+... ..+..++ ..+.+|||||+.++...+..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 589999999999999999998774 33556655332 2333333 5689999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCC--CCCCcEEEEEeCCCCCCCCC
Q psy689 116 ADVKRFEESGFELHELLSDEK--LTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~ 156 (162)
+++++|..+..|+..+..... ..+.|+++|+||+|+...+.
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~ 123 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYERE 123 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCc
Confidence 999999999999887765432 25789999999999975443
No 69
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.92 E-value=5.7e-24 Score=147.02 Aligned_cols=118 Identities=26% Similarity=0.448 Sum_probs=96.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCcceeEE--EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDIS-HITPTQGFNI--KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
.+||+++|++|||||||++++.+..+. .+.++.+... ..+...+ ..+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 379999999999999999999987643 4455655433 3344443 6789999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
||++++++|..+..|+..+.+.. ..+.|+++|+||+|+.....
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~ 124 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRV 124 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccC
Confidence 99999999999999988876543 24789999999999876543
No 70
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.92 E-value=5.6e-24 Score=146.63 Aligned_cols=113 Identities=21% Similarity=0.384 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCcceeEEE--EEE--eCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDIS-HITPTQGFNIK--SVQ--SEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
+||+++|++|||||||++++..+.+. ...++.+.... .+. .....+.+|||+|++.+...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999887743 33344443322 222 23468899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
|++++.++..+..|+..+.+.. ++.|+++|+||+|+..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~ 118 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDP 118 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCch
Confidence 9999999999988888876543 4789999999999853
No 71
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.92 E-value=7.9e-24 Score=146.83 Aligned_cols=118 Identities=20% Similarity=0.421 Sum_probs=96.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCcceeEE--EEEEe--CCeEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDIS-HITPTQGFNI--KSVQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
.+..+||+++|++|||||||++++.++.+. .+.++.+... ..+.. ....+.+||+||++++...+..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 345799999999999999999999887743 3456666543 23333 347789999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCC---CCCCcEEEEEeCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEK---LTGVPLLVYANKQDLL 152 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~ 152 (162)
++|||+++++++..+..|...+..... ..+.|+++|+||+|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 999999999999999888887765432 2468999999999986
No 72
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.92 E-value=8e-24 Score=146.31 Aligned_cols=117 Identities=15% Similarity=0.228 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEEE-EE--eCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIKS-VQ--SEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~-~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d 114 (162)
+||+++|++|||||||++++.++.+ ..+.|+.+..+.. +. .....+.+||+||+.++...+..+++.+|++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 6899999999999999999998874 3445555533322 22 234788999999999999988889999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhCCC--CCCCcEEEEEeCCCCCCCC
Q psy689 115 SADVKRFEESGFELHELLSDEK--LTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~ 155 (162)
+++++++..+..|+..+.+... .+++|+++|+||+|+...+
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKR 124 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccC
Confidence 9999999999888766654322 2579999999999997643
No 73
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.92 E-value=6.5e-24 Score=151.19 Aligned_cols=118 Identities=24% Similarity=0.383 Sum_probs=98.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
..+||+++|++|||||||++++.+..+ ..+.+|.+... ..+... ...+.+||+||+..+...+..+++.++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 468999999999999999999998874 34567776443 344433 3678999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
|||++++++|+.+..|+..+.... ...|++||+||+|+.....
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~ 127 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKV 127 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccc
Confidence 999999999999999988876543 4789999999999976544
No 74
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.92 E-value=6e-24 Score=146.15 Aligned_cols=116 Identities=21% Similarity=0.389 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE--EEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK--SVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
+|++++|++|||||||++++.+... ....++.+.... .+..+ ...+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999998873 444555554333 23333 368899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|+++++++..+..|+..+.... .+++|+++|+||.|+....
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~ 121 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQR 121 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhc
Confidence 9999999999999888765443 3589999999999997644
No 75
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.92 E-value=2.7e-24 Score=151.98 Aligned_cols=115 Identities=23% Similarity=0.334 Sum_probs=94.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE-EEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEEC
Q psy689 40 RILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK-SVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
||+++|++|||||||++++..+.+ ..+.|+.+..+. .+..+ ...+.+||++|++.+...+..+++.+|++++|||+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv 81 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV 81 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence 899999999999999999998875 345677665443 23333 37899999999999998888899999999999999
Q ss_pred CChhhHHHHH-HHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 116 ADVKRFEESG-FELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 116 ~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+++++|+.+. .|+..+.... ++.|+++|+||+|+.+.++
T Consensus 82 ~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~ 121 (189)
T cd04134 82 DSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDLREARN 121 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccChh
Confidence 9999999886 4766665443 4789999999999987653
No 76
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.92 E-value=9e-24 Score=146.51 Aligned_cols=117 Identities=20% Similarity=0.355 Sum_probs=95.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
-+||+++|++|||||||++++.+... ....++.+.+. ..+..+ ...+.+||+||++++...+..+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999998873 33345555443 233333 36889999999999998889999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+|++++.+++.+..|+..+.... .+++|+++|+||.|+....
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~ 125 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRR 125 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECccccccc
Confidence 99999999999999988876643 2579999999999997543
No 77
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=8.7e-24 Score=149.58 Aligned_cols=116 Identities=24% Similarity=0.473 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--ccCCcceeEEE--EEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDIS--HITPTQGFNIK--SVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~--~~~~~~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
+||+++|++|||||||++++.+.... .+.++.+.... .+..+ ...+.+||+||+.++...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999888743 45566654433 23443 37889999999999988888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+|++++++++.+..|+..+..... .++|+++|+||.|+...+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~NK~Dl~~~~ 122 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQ-EDVVIMLLGNKADMSGER 122 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccchhcc
Confidence 999999999999888887766532 478999999999997543
No 78
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=7.3e-24 Score=149.51 Aligned_cols=117 Identities=27% Similarity=0.494 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCc-cCCcceeEE--EEEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDISH-ITPTQGFNI--KSVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
+||+++|++|||||||++++.+..+.. +.++.+... ..+..+ ...+.+||++|+..+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999887544 667776443 334433 367899999999999989999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
|++++++|..+..|+..+..... ..+|+++|+||.|+.+...
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~-~~~~~ivv~nK~Dl~~~~~ 122 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYAR-ENVIKVIVANKSDLVNNKV 122 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCCCccccc
Confidence 99999999999998888766432 4589999999999986543
No 79
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.92 E-value=9e-24 Score=145.80 Aligned_cols=117 Identities=25% Similarity=0.430 Sum_probs=97.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE--EEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK--SVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
.+||+++|++|||||||++++.+... ..+.|+.+..+. .+..++ ..+.+||+||+..+...+..+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 47999999999999999999998874 345566665433 344444 6789999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+|++++.++..+..|+..+..... .++|+++|+||+|+...+
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~pi~vv~nK~Dl~~~~ 124 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLR 124 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccc
Confidence 999999999999999888766543 368999999999997654
No 80
>KOG0071|consensus
Probab=99.92 E-value=2.3e-24 Score=140.97 Aligned_cols=124 Identities=49% Similarity=0.791 Sum_probs=119.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSA 116 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~ 116 (162)
++.+++.+|-.++||||++.+|..++...+.||.|++.+++++++..+++||.+|++..+.+|+.|++...++++|+|..
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa 95 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSA 95 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEecc
Confidence 47899999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCCCc
Q psy689 117 DVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAGYH 160 (162)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~ 160 (162)
+++..+.+...+..+++.......+++|..||.|+.+.+.++|+
T Consensus 96 ~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei 139 (180)
T KOG0071|consen 96 DRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEI 139 (180)
T ss_pred chhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHH
Confidence 99999999999999999988889999999999999999998875
No 81
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.92 E-value=8.7e-24 Score=145.44 Aligned_cols=117 Identities=23% Similarity=0.421 Sum_probs=97.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCc-cCCcceeEE--EEEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDISH-ITPTQGFNI--KSVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
.+||+++|++|||||||++++.+..... ..++.+..+ ..+..+ ...+.+||+||+.++...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999988554 666666432 334443 47889999999999998888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+|+++++++..+..|+..+..... +..|+++++||+|+....
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~ 122 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKR 122 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccC
Confidence 999999999999999888776643 679999999999988543
No 82
>KOG0394|consensus
Probab=99.92 E-value=2.1e-24 Score=147.11 Aligned_cols=121 Identities=24% Similarity=0.435 Sum_probs=102.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEE--EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNI--KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
+...+||+++|++|+|||||++++.+.. ...+..|+|..+ +.+..++ ..+++|||+|+++|.++.-.+|+++|++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 3456999999999999999999999887 455777877443 3344444 7899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCC---CCCCcEEEEEeCCCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEK---LTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~~~~ 155 (162)
+++||++++.+|+.+..|-.+.+.+.. +..-|++|+|||.|+.+..
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~ 134 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK 134 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc
Confidence 999999999999999999888777643 2458999999999998753
No 83
>KOG0079|consensus
Probab=99.92 E-value=7.9e-25 Score=144.39 Aligned_cols=118 Identities=25% Similarity=0.431 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEE--EEEEe--CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNI--KSVQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~--~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
++.+|+|++|+|||+|+.++.... ...+..|+|..+ .++.. +..++.|||++|+++|+.+...+++..+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 567899999999999999998877 445667777543 34444 4589999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAG 158 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~ 158 (162)
|+++.++|..+..|+.++.++.. ..|-++||||.|..+.+-.+
T Consensus 89 DVTn~ESF~Nv~rWLeei~~ncd--sv~~vLVGNK~d~~~RrvV~ 131 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNCD--SVPKVLVGNKNDDPERRVVD 131 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcCc--cccceecccCCCCccceeee
Confidence 99999999999999999988864 88999999999998876543
No 84
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.92 E-value=1.4e-23 Score=142.99 Aligned_cols=115 Identities=43% Similarity=0.790 Sum_probs=100.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChh
Q psy689 41 ILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVK 119 (162)
Q Consensus 41 v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~ 119 (162)
|+++|++|||||||++++.+.. ...+.|+.+.....+..+...+.+||+||+..+...+..+++.+|++++|+|+++++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 7899999999999999999886 445667777777777777799999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 120 RFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
++.....++..+.......++|+++|+||+|+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 117 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL 117 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc
Confidence 988888888887765545688999999999987654
No 85
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.92 E-value=9.8e-24 Score=146.29 Aligned_cols=118 Identities=19% Similarity=0.302 Sum_probs=97.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE-EEEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI-KSVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~-~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d 114 (162)
+|++++|++|||||||++++.++.. ..+.++.+... ..+... ...+++||+||+.++..+++.+++.++++++|||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~ 81 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS 81 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence 6899999999999999999997774 44556655332 333333 3688999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 115 SADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
.+++++++....|...+.+.....+.|+++++||.|+.+.+.
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~ 123 (168)
T cd04177 82 VTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQ 123 (168)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCc
Confidence 999999999998888877654446899999999999976543
No 86
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.92 E-value=1.4e-23 Score=147.88 Aligned_cols=115 Identities=20% Similarity=0.291 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE-EEEeC---CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK-SVQSE---GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~-~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
+||+++|++|||||||++++.++.+ ..+.++.+..+. .+... ...+.+|||||++++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 4899999999999999999998874 345566554432 23332 368999999999999999999999999999999
Q ss_pred ECCChhhHHHHHH-HHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 114 DSADVKRFEESGF-ELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 114 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|++++++|+.+.. |+..+... .++.|+++|+||.|+....
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~ 121 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDK 121 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCc
Confidence 9999999999865 66655443 2478999999999997654
No 87
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.92 E-value=1.4e-23 Score=144.11 Aligned_cols=116 Identities=22% Similarity=0.453 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCcceeE--EEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDIS-HITPTQGFN--IKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~-~~~~~~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
+||+++|++|||||||++++.+.... .+.++.+.. ...+..++ ..+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999988743 345555533 23344444 67899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|++++++|+.+..|+..+..... .+.|+++|+||+|+.+..
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~ 121 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKR 121 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccC
Confidence 99999999999999888765432 369999999999996443
No 88
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.91 E-value=1.4e-23 Score=144.36 Aligned_cols=110 Identities=20% Similarity=0.332 Sum_probs=88.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCc-cCCcceeEEEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEEEEC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDISH-ITPTQGFNIKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
+||+++|++|||||||+.++..+.+.. +.|+.+.....+..++ ..+.+||++|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 489999999999999999988776433 3444444344555555 6789999999975 2456889999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 116 ADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
+++++|+.+..|+..+......+++|+++||||+|+..
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~ 113 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISE 113 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhh
Confidence 99999999999998887765446799999999999853
No 89
>PLN03118 Rab family protein; Provisional
Probab=99.91 E-value=1.8e-23 Score=150.17 Aligned_cols=122 Identities=23% Similarity=0.389 Sum_probs=99.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEE--EEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIK--SVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
....+||+++|++|||||||++++.+.....+.++.+.... .+..+ ...+.+|||||+.++...+..+++.+|+++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 34578999999999999999999998887777888776543 34443 368899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhh-CCCCCCCcEEEEEeCCCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLS-DEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|||++++++|..+..+|...+. .....+.|+++|+||+|+.....
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~ 137 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD 137 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc
Confidence 99999999999998775544333 33335689999999999976544
No 90
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.91 E-value=2.3e-23 Score=147.48 Aligned_cols=114 Identities=23% Similarity=0.415 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--ccCCcceeEE--EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDIS--HITPTQGFNI--KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~--~~~~~~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
+||+++|++|+|||||++++.++.+. .+.++.+..+ ..+..++ ..+.+||++|+.++...+..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 58999999999999999999988753 4677777544 2344444 6778999999999998888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
||++++.+++.+..|+..+.... ++.|+++|+||+|+...
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~ 120 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIEQ 120 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEccccccc
Confidence 99999999999888888776543 47899999999998654
No 91
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.91 E-value=2e-23 Score=143.49 Aligned_cols=115 Identities=25% Similarity=0.436 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCcceeEEE--EEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDIS-HITPTQGFNIK--SVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
+|++++|++|||||||++++.+.... .+.++.+.... .+... ...+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999988743 36666665433 23333 378999999999999988899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
|++++.+++.+..|+..+.......+.|+++|+||+|+..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN 120 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc
Confidence 9999999999988888877766556899999999999973
No 92
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.91 E-value=1.9e-23 Score=144.01 Aligned_cols=116 Identities=23% Similarity=0.342 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC--C-CCccCCcceeEEE--EEEe---CCeEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASE--D-ISHITPTQGFNIK--SVQS---EGFKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~--~-~~~~~~~~~~~~~--~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
+||+++|++|||||||++++... . ...+.++.+.... .+.. ....+.+||+||+..+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 2 3456677765432 2322 3489999999999999988999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|+|+++++++..+..|+..+.+.. .+.|+++|+||+|+.....
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 124 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAE 124 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccC
Confidence 9999999999998888887766543 4689999999999976543
No 93
>PLN03110 Rab GTPase; Provisional
Probab=99.91 E-value=2.1e-23 Score=150.36 Aligned_cols=122 Identities=24% Similarity=0.406 Sum_probs=100.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
....+||+++|++|||||||+++|.+... ..+.++.+..+ ..+...+ ..+.+||++|+.++...+..+++.++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 34568999999999999999999988774 35567777554 3444443 6899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
++|||++++.+|+.+..|+..+..... .++|+++|+||+|+.+.+..
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~Dl~~~~~~ 135 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHAD-SNIVIMMAGNKSDLNHLRSV 135 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEEChhcccccCC
Confidence 999999999999999999887765532 57999999999999765543
No 94
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.91 E-value=2.9e-23 Score=152.25 Aligned_cols=116 Identities=23% Similarity=0.346 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCccee-EEEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDIS-HITPTQGF-NIKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~-~~~~~~~~-~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d 114 (162)
+||+++|++|||||||++++.++.+. .+.||.+. ....+..++ +.+.+|||+|+..+...+..++..+|++++|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 48999999999999999999887743 55666652 233444444 788999999999998888888999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhCC--------CCCCCcEEEEEeCCCCCCC
Q psy689 115 SADVKRFEESGFELHELLSDE--------KLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~iivv~nK~Dl~~~ 154 (162)
++++++|+.+..|+.++.... ...++|+++|+||+|+...
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~ 128 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP 128 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc
Confidence 999999999998888876532 2257999999999999753
No 95
>KOG0086|consensus
Probab=99.91 E-value=2.5e-24 Score=142.83 Aligned_cols=120 Identities=21% Similarity=0.364 Sum_probs=103.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE----EEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK----SVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~----~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
-+|++++|+.|+|||.|++++...++ ...+.|+|+.+. .+....+++++|||+|+++|+...+.||+.+.+.++|
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV 88 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 88 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence 47999999999999999999988774 445667776654 2334558999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAG 158 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~ 158 (162)
||++++++|+.+..|+..+..... +++-|+++|||.||...+...
T Consensus 89 YD~TsrdsfnaLtnWL~DaR~lAs-~nIvviL~GnKkDL~~~R~Vt 133 (214)
T KOG0086|consen 89 YDITSRDSFNALTNWLTDARTLAS-PNIVVILCGNKKDLDPEREVT 133 (214)
T ss_pred EeccchhhHHHHHHHHHHHHhhCC-CcEEEEEeCChhhcChhhhhh
Confidence 999999999999999999876544 688899999999999887653
No 96
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.91 E-value=2.7e-23 Score=144.46 Aligned_cols=117 Identities=21% Similarity=0.249 Sum_probs=95.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC--CccCCcceeEE--EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDI--SHITPTQGFNI--KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~--~~~~~~~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
.+.+||+++|++|||||||++++.++.+ ..+.||.+..+ ..+..++ ..+.+||++|+..+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 3578999999999999999999998875 46677776443 3344444 6789999999999988888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
++|+|++++.+++.+..|+...... .++|+++|+||+|+.+..
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~ 124 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQ 124 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccc
Confidence 9999999999999887887654322 478999999999996543
No 97
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.91 E-value=1.6e-23 Score=144.05 Aligned_cols=116 Identities=28% Similarity=0.529 Sum_probs=97.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEE--EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEEEE
Q psy689 40 RILLLGLDNAGKTTILKTLASED-ISHITPTQGFNI--KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d 114 (162)
||+++|++|||||||++++.+.. ...+.++.+... ..+..++ ..+++||++|++.+...+..+++.+|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999877 444566665443 3444433 779999999999999988999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 115 SADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++++++|..+..|+..+..... .++|++|||||.|+.+.+.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~ 121 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDERE 121 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSS
T ss_pred cccccccccccccccccccccc-ccccceeeecccccccccc
Confidence 9999999999999988877654 4689999999999987443
No 98
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.91 E-value=2.9e-23 Score=143.73 Aligned_cols=116 Identities=20% Similarity=0.266 Sum_probs=89.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCccCCc-ceeEEE--EEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEEC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDISHITPT-QGFNIK--SVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~~~~~~-~~~~~~--~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
+||+++|++|||||||++++.++.+....++ ...... .+.....++.+|||||...+...+..+++.+|++++|||+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 4899999999999999999998875333332 221111 2233558899999999998888778888999999999999
Q ss_pred CChhhHHHHHH-HHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 116 ADVKRFEESGF-ELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 116 ~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+++.++..+.. |+..+.... .+.|+++|+||+|+.+...
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~ 120 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSS 120 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccc
Confidence 99999999765 555444332 3789999999999977654
No 99
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.91 E-value=5.6e-23 Score=141.36 Aligned_cols=116 Identities=26% Similarity=0.475 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
+||+++|++|||||||++++.+... ....++.+... ..+..++ ..+.+||+||+..+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999998774 33445555433 3344444 68899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|++++.+++.+..|+..+..... +++|+++|+||+|+....
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~ 121 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQR 121 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhccccc
Confidence 99999999998888887766543 489999999999987644
No 100
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.91 E-value=4.9e-23 Score=142.76 Aligned_cols=115 Identities=25% Similarity=0.465 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
+||+++|++|||||||++++.+... ....++.+... ..+...+ ..+++||+||+..+...+..+++.+|++++||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999988863 33344545332 3344433 67789999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCC---CCCCcEEEEEeCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEK---LTGVPLLVYANKQDLLG 153 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~~ 153 (162)
|+++++++.....|...+..... ..++|+++|+||+|+..
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 99999999888888776655433 24799999999999985
No 101
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.91 E-value=3e-23 Score=147.73 Aligned_cols=108 Identities=21% Similarity=0.381 Sum_probs=92.6
Q ss_pred EcCCCCCHHHHHHHHhcCCC-CccCCcceeEEEEE--Ee--CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCCh
Q psy689 44 LGLDNAGKTTILKTLASEDI-SHITPTQGFNIKSV--QS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADV 118 (162)
Q Consensus 44 iG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~--~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~ 118 (162)
+|++|||||||++++..+.+ ..+.+|.+...... .. ...++.+|||+|++++..++..+++.+|++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 59999999999999998774 45678887665433 32 348899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 119 KRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
.+|..+..|+..+.+.. .++|+++||||+|+..
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~ 113 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKD 113 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECccccc
Confidence 99999999988887654 4799999999999864
No 102
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.90 E-value=6e-23 Score=146.12 Aligned_cols=117 Identities=21% Similarity=0.332 Sum_probs=90.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEeCC--eEEEEEeCCCCCCChh--------hHHhhccc
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQSEG--FKLNVWDIGGQRKIRP--------YWRNYFDN 105 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~--------~~~~~~~~ 105 (162)
+||+++|++|||||||++++.++.+ ..+.|+.+... ..+..++ ..+.+|||||...+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999998774 33566665332 2344444 6788999999765421 12345789
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhCC--CCCCCcEEEEEeCCCCCCCC
Q psy689 106 TDILIYVIDSADVKRFEESGFELHELLSDE--KLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 106 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~iivv~nK~Dl~~~~ 155 (162)
+|++++|||++++++|+.+..|+..+.... ...++|+++|+||+|+.+.+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~ 132 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHR 132 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccc
Confidence 999999999999999999988888877654 24679999999999997653
No 103
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.90 E-value=5e-23 Score=142.22 Aligned_cols=116 Identities=20% Similarity=0.277 Sum_probs=88.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeE-EEEEEeC--CeEEEEEeCCCCCC-ChhhHHhhcccCCEEEEEEE
Q psy689 40 RILLLGLDNAGKTTILKTLASEDI-SHITPTQGFN-IKSVQSE--GFKLNVWDIGGQRK-IRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~-~~~~~~~--~~~~~l~D~~G~~~-~~~~~~~~~~~~d~vl~v~d 114 (162)
||+++|++|||||||++++....+ ..+.++.+.. ...+..+ ...+++||+||+.. .......+++.+|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 589999999999999999987653 3445554322 2233333 46789999999885 34456778899999999999
Q ss_pred CCChhhHHHHHHHHHHHhhCCC-CCCCcEEEEEeCCCCCCCC
Q psy689 115 SADVKRFEESGFELHELLSDEK-LTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~~ 155 (162)
++++++|+.+..|+..+..... ..++|+++|+||+|+...+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 122 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYR 122 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhC
Confidence 9999999999888777665432 3579999999999986554
No 104
>KOG0075|consensus
Probab=99.90 E-value=3.3e-24 Score=141.21 Aligned_cols=121 Identities=40% Similarity=0.775 Sum_probs=112.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSA 116 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~ 116 (162)
+..+.++|-.+||||||+|.+..++ .....|+.|++...++-.+..+.+||.||+++++.+|+.|++.++++++|+|+.
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaa 99 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAA 99 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecC
Confidence 5678999999999999999988765 666789999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy689 117 DVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAG 158 (162)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~ 158 (162)
+++..+.....+...+.+..+.++|++|.|||.|+.++.+..
T Consensus 100 d~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~ 141 (186)
T KOG0075|consen 100 DPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKI 141 (186)
T ss_pred CcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHH
Confidence 999999999999999999888999999999999999887654
No 105
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.90 E-value=7.7e-23 Score=142.29 Aligned_cols=112 Identities=21% Similarity=0.339 Sum_probs=90.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE-EEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECC
Q psy689 41 ILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK-SVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSA 116 (162)
Q Consensus 41 v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~ 116 (162)
|+++|++|||||||++++.++.+ ..+.++....+. .+..++ ..+.+|||||++.+...+..+++.+|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 57999999999999999998874 334555543332 333333 57899999999999999999999999999999999
Q ss_pred ChhhHHHHHH-HHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 117 DVKRFEESGF-ELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 117 ~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++++|+.+.. |+..+.... ++.|+++|+||+|+...
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~ 117 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLRED 117 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhC
Confidence 9999999864 666665543 58999999999999764
No 106
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.90 E-value=6e-23 Score=142.82 Aligned_cols=114 Identities=23% Similarity=0.316 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE-EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI-KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d 114 (162)
+||+++|++|+|||||++++..+.+ ..+.++..... ..+..++ ..+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 5899999999999999999988874 34455554332 2344443 568899999999999888899999999999999
Q ss_pred CCChhhHHHHHH-HHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 115 SADVKRFEESGF-ELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 115 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++++.+|+.+.. |...+... .++.|+++|+||+|+.+.
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDD 119 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcC
Confidence 999999999865 54444433 368999999999998654
No 107
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.90 E-value=8.5e-23 Score=139.99 Aligned_cols=117 Identities=25% Similarity=0.396 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCcce--eEEEEEEe--CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDIS-HITPTQG--FNIKSVQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~-~~~~~~~--~~~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
+||+++|++|+|||||++++.+.... ...++.. .....+.. ....+.+||+||+..+...++.+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999988743 2333332 22233333 3367899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
|++++++++....|+..+..... .++|+++|+||+|+.+...
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~ 122 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRV 122 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccC
Confidence 99999999999888877766543 3789999999999986543
No 108
>PLN03108 Rab family protein; Provisional
Probab=99.90 E-value=1.1e-22 Score=145.98 Aligned_cols=119 Identities=19% Similarity=0.332 Sum_probs=96.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE--EEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK--SVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
..+||+++|++|||||||++++....+ ..+.++.+..+. .+... ...+.+||++|+..+...+..+++.+|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 458999999999999999999998763 334566665432 33443 3678899999999999889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
|||++++.+|+.+..|+..+.... .+..|+++|+||+|+...+.
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~ 128 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRA 128 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccC
Confidence 999999999999988887765543 25789999999999976543
No 109
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.90 E-value=2e-22 Score=145.70 Aligned_cols=115 Identities=21% Similarity=0.255 Sum_probs=90.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC--CccCCcce--eEEEEEEe--CCeEEEEEeCCCCCCChhhHHhhcc-cCCEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI--SHITPTQG--FNIKSVQS--EGFKLNVWDIGGQRKIRPYWRNYFD-NTDILIY 111 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~--~~~~~~~~--~~~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~-~~d~vl~ 111 (162)
+||+++|++|||||||++++..+.+ ..+.++.+ ....++.. ....+.+||++|+.. .....+++ .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 5899999999999999999987764 45556553 33344444 457899999999982 23345566 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|||++++.+|..+..|+..+.......++|+++|+||+|+.+.+
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~ 122 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSR 122 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccc
Confidence 99999999999998888877765444689999999999997654
No 110
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.90 E-value=2.2e-22 Score=143.21 Aligned_cols=114 Identities=24% Similarity=0.350 Sum_probs=94.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCc-cCCcce-eEEEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEEEEC
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISH-ITPTQG-FNIKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~-~~~~~~-~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
||+++|++|||||||++++.+..+.. +.++.. .....+...+ ..+++||+||+..+...+..+++.+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999887433 344443 2233444444 6889999999999998888899999999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 116 ADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
+++.+++.+..|+..+.......++|+++|+||+|+..
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 99999999988888887765556799999999999965
No 111
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.90 E-value=3e-22 Score=137.64 Aligned_cols=116 Identities=23% Similarity=0.377 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE-EEEEe--CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI-KSVQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~-~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d 114 (162)
+||+++|++|||||||++++....+ ..+.++.+... ..... ....+.+||+||+..+...+..+++.+|++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 5899999999999999999997763 33344433222 22233 34789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 115 SADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++++.++.....|+..+.......++|+++|+||+|+...
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~ 120 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDK 120 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccc
Confidence 9999999999999888887654468999999999999763
No 112
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.90 E-value=1.1e-22 Score=141.64 Aligned_cols=114 Identities=19% Similarity=0.344 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEE-EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNI-KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d 114 (162)
+|++++|++|+|||||++++.++. ...+.+|....+ ..+..++ ..+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 589999999999999999998766 334555543221 2334433 678899999999999998889999999999999
Q ss_pred CCChhhHHHHH-HHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 115 SADVKRFEESG-FELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 115 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++++++|+.+. .|+..+.... ++.|+++|+||+|+...
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 119 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHN--PKAPIILVGTQADLRTD 119 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhhccC
Confidence 99999999975 4666655432 46899999999999653
No 113
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.89 E-value=2.3e-22 Score=136.89 Aligned_cols=113 Identities=28% Similarity=0.464 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCcc-CCcceeEEEEE--Ee--CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDISHI-TPTQGFNIKSV--QS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~~~-~~~~~~~~~~~--~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
+||+++|++|||||||++++.+...... .++.+...... .. ....+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999998885443 56666554433 33 3478899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
|+++++++..+..|+..+..... ...|+++++||+|+.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~ 118 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLE 118 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEccccc
Confidence 99999999999888887776542 478999999999996
No 114
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.89 E-value=2.3e-22 Score=140.03 Aligned_cols=114 Identities=20% Similarity=0.332 Sum_probs=91.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE-EEEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI-KSVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~-~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d 114 (162)
.||+++|++|||||||++++.+..+ ..+.|+.+... ..+..+ ...+.+|||+|++.+...+..++.++|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 5899999999999999999998874 34556665432 234443 3678999999999998888888899999999999
Q ss_pred CCChhhHHHHHH-HHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 115 SADVKRFEESGF-ELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 115 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++++++|+.+.. |...+.+. ..+.|+++|+||+|+...
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 120 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccC
Confidence 999999988865 55555433 247899999999998754
No 115
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=8e-23 Score=134.00 Aligned_cols=109 Identities=25% Similarity=0.477 Sum_probs=80.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC---ccCC----cceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 40 RILLLGLDNAGKTTILKTLASEDIS---HITP----TQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~---~~~~----~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
||+|+|++|||||||+++|.+.... ...+ +..........+...+.+||++|+..+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988754 1111 22222223333445689999999988887777779999999999
Q ss_pred EECCChhhHHHHHH---HHHHHhhCCCCCCCcEEEEEeCCC
Q psy689 113 IDSADVKRFEESGF---ELHELLSDEKLTGVPLLVYANKQD 150 (162)
Q Consensus 113 ~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~iivv~nK~D 150 (162)
||.+++.+++.+.. |+..+.... .++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~--~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRD--KNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHS--SCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccC--CCCCEEEEEeccC
Confidence 99999999998744 455554432 4699999999998
No 116
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.89 E-value=9.8e-22 Score=136.03 Aligned_cols=119 Identities=26% Similarity=0.371 Sum_probs=94.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCccee--EEEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDIS-HITPTQGF--NIKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~~-~~~~~~~~--~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
..++++++|++|||||||++++..+... ...++.+. ....+...+ ..+.+||+||+..+...+..+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4589999999999999999999866633 34455543 233444544 678999999999999988899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+.
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~~i~v~NK~D~~~~~~ 129 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYA-NNKVITILVGNKIDLAERRE 129 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccc
Confidence 999999999988888876654432 24689999999999976543
No 117
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.89 E-value=2.4e-22 Score=139.20 Aligned_cols=117 Identities=22% Similarity=0.355 Sum_probs=91.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE-EEEE--eCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI-KSVQ--SEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~-~~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d 114 (162)
+||+++|++|||||||+++|.+... ..+.++..... ..+. .....+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 5899999999999999999998874 33344443222 2222 234789999999999888888888899999999999
Q ss_pred CCChhhHHHHHH-HHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 115 SADVKRFEESGF-ELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 115 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
++++.+|..... |+..+.... .+.|+++|+||+|+.+....
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~ 122 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLRDDENT 122 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhhhchhh
Confidence 999999988766 444444332 37999999999999887754
No 118
>KOG0095|consensus
Probab=99.89 E-value=7.8e-23 Score=135.30 Aligned_cols=120 Identities=26% Similarity=0.382 Sum_probs=101.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCc-cCCcceeEE--EEEEe--CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDISH-ITPTQGFNI--KSVQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~~-~~~~~~~~~--~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
-+||+++|..|+|||.|++++..+-++. ...|+|+.+ +++.. +..++++|||+|+++|+.....|++.+|+++++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 4799999999999999999998877433 355666543 34444 558999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAG 158 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~ 158 (162)
||++...+|.-+..|+.+|.+... .++--++||||.|+.+.++..
T Consensus 87 ydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~drrevp 131 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADRREVP 131 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhhhhhh
Confidence 999999999999999999887654 467789999999999886643
No 119
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.89 E-value=5.9e-22 Score=135.55 Aligned_cols=116 Identities=22% Similarity=0.350 Sum_probs=94.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeE-EEEEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEEC
Q psy689 40 RILLLGLDNAGKTTILKTLASED-ISHITPTQGFN-IKSVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~-~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
||+++|++|||||||++++.+.. ...+.++.+.. ...+... ...+++||+||+..+...+..+++.+|++++|+|.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999998775 33344444422 2234444 47889999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 116 ADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
++++++.....|+..+.........|+++|+||+|+....
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 120 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER 120 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc
Confidence 9999999999988888776544589999999999998743
No 120
>KOG0074|consensus
Probab=99.89 E-value=2.7e-22 Score=131.46 Aligned_cols=138 Identities=64% Similarity=0.966 Sum_probs=125.0
Q ss_pred HHHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCC-eEEEEEeCCCCCCChhhHHhh
Q psy689 24 LLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEG-FKLNVWDIGGQRKIRPYWRNY 102 (162)
Q Consensus 24 ~~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~~G~~~~~~~~~~~ 102 (162)
+..++....+...+.++++++|-.++|||||++.|.+.......||.|++...+..++ ..+++||.+|+...++.|..|
T Consensus 3 l~til~~~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNY 82 (185)
T KOG0074|consen 3 LETILCCCKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNY 82 (185)
T ss_pred HHHHHHHhcCCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhh
Confidence 4556667777778899999999999999999999999999999999999999998876 999999999999999999999
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCCCcc
Q psy689 103 FDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAGYHS 161 (162)
Q Consensus 103 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~ 161 (162)
|...|++++|+|.+++..|+.+...+-+....-+....|+.|..||.|+.-..+.++++
T Consensus 83 yenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia 141 (185)
T KOG0074|consen 83 YENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIA 141 (185)
T ss_pred hhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHH
Confidence 99999999999999999999888888888877777899999999999999887776653
No 121
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.88 E-value=6.1e-22 Score=138.58 Aligned_cols=117 Identities=21% Similarity=0.258 Sum_probs=95.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CccCCccee-EEEEEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-SHITPTQGF-NIKSVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~-~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d 114 (162)
.||+++|++|+|||||++++.+... ....|+.+. ....+... ...+.+||+||+.++...+..++..+++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 5899999999999999999998764 234444432 23334444 3668999999999999899999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 115 SADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+++..+++.+..|+..+.+.....+.|+++|+||+|+...+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 122 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQR 122 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcC
Confidence 99999999999998888876555678999999999997543
No 122
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.88 E-value=5.2e-22 Score=140.95 Aligned_cols=112 Identities=18% Similarity=0.267 Sum_probs=84.9
Q ss_pred ceEEEEEcCCCCCHHHHHH-HHhcCC------CCccCCccee--EEE-----------EEEeCCeEEEEEeCCCCCCChh
Q psy689 38 ELRILLLGLDNAGKTTILK-TLASED------ISHITPTQGF--NIK-----------SVQSEGFKLNVWDIGGQRKIRP 97 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~-~l~~~~------~~~~~~~~~~--~~~-----------~~~~~~~~~~l~D~~G~~~~~~ 97 (162)
.+||+++|++|||||||+. ++.+.. ...+.||.+. .+. .+......+.+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999996 554432 2345677642 111 12334588999999998753
Q ss_pred hHHhhcccCCEEEEEEECCChhhHHHHHH-HHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 98 YWRNYFDNTDILIYVIDSADVKRFEESGF-ELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 98 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
....+++.+|++++|||++++.+|+.+.. |+..+.... ++.|+++||||+|+.+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~ 134 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRY 134 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccc
Confidence 44568899999999999999999999874 766665443 4789999999999975
No 123
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.88 E-value=2.3e-21 Score=139.52 Aligned_cols=119 Identities=21% Similarity=0.364 Sum_probs=98.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEEEEEe----CCeEEEEEeCCCCCCChhhHHhhcccCCE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIKSVQS----EGFKLNVWDIGGQRKIRPYWRNYFDNTDI 108 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 108 (162)
.....+|++++|++|||||||++++..+. ...+.++.+........ ....+.+||++|+..+...+..++..+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 34557999999999999999998776655 45677888866554433 34889999999999998888889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 109 LIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+++|||++++.+|..+..|+..+.... .+.|+++++||+|+.+.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~ 128 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDR 128 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccc
Confidence 999999999999999988888876543 47899999999998653
No 124
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.88 E-value=5.9e-22 Score=141.53 Aligned_cols=119 Identities=29% Similarity=0.451 Sum_probs=92.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEe----CCeEEEEEeCCCCCCChhhHHhhcccC-CEEEEEEE
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQS----EGFKLNVWDIGGQRKIRPYWRNYFDNT-DILIYVID 114 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~-d~vl~v~d 114 (162)
+|+++|++|||||||+++|.......+.++...+...+.. .+..+.+||+||+.++...+..+++.+ +++++|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999988754444443333333332 357899999999999998888889998 99999999
Q ss_pred CCCh-hhHHHHHHHHHHHhhCC--CCCCCcEEEEEeCCCCCCCCCCC
Q psy689 115 SADV-KRFEESGFELHELLSDE--KLTGVPLLVYANKQDLLGAAPAG 158 (162)
Q Consensus 115 ~~~~-~~~~~~~~~~~~~~~~~--~~~~~~iivv~nK~Dl~~~~~~~ 158 (162)
+++. .++..+..++..++... ..+++|+++++||+|+....+..
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~ 128 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAK 128 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHH
Confidence 9887 67777777776655432 12589999999999998876654
No 125
>KOG0088|consensus
Probab=99.88 E-value=6.8e-23 Score=136.75 Aligned_cols=123 Identities=22% Similarity=0.293 Sum_probs=99.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCc-cCCcce----eEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDISH-ITPTQG----FNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDI 108 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~~~-~~~~~~----~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 108 (162)
.+.-.+|++++|..-+|||||+-++.-..+.. .-+|.. .....+......+.||||+|+++|..+-+-||++.++
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence 44558999999999999999998887665322 111211 1122233345789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 109 LIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
+++|||++++++|+.+..|..++..... ..+.++|||||.||...+..
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~V 136 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQV 136 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhh
Confidence 9999999999999999999999887665 57899999999999887754
No 126
>KOG0081|consensus
Probab=99.87 E-value=1.1e-23 Score=140.57 Aligned_cols=121 Identities=21% Similarity=0.345 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEE--EEEe-----------CCeEEEEEeCCCCCCChhhHHhhcc
Q psy689 39 LRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK--SVQS-----------EGFKLNVWDIGGQRKIRPYWRNYFD 104 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~--~~~~-----------~~~~~~l~D~~G~~~~~~~~~~~~~ 104 (162)
+|++.+|++|+||||++.++..+. .....+|.|+.+. .+.. +.+.+++|||+|+++|+.+...+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 577889999999999999988777 4455666775543 2222 1267899999999999999999999
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCCC
Q psy689 105 NTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAGY 159 (162)
Q Consensus 105 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~ 159 (162)
++-+++++||+++..+|-.+..|+.+..-+....++-|+++|||+||.+-+...+
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~ 144 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSE 144 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhH
Confidence 9999999999999999999999999998887777889999999999998776543
No 127
>KOG0395|consensus
Probab=99.87 E-value=1.5e-21 Score=138.28 Aligned_cols=121 Identities=23% Similarity=0.350 Sum_probs=103.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEE-E--EEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK-S--VQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~-~--~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
+.+|++++|.+|+|||+|..++.... ...+.||.+..+. . +..+...+.++||+|+..+..+...+++.+|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46899999999999999999998887 5667888875433 3 333447889999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
|+++++.||+.+..++..+.+.......|+++||||+|+...+..
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V 126 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQV 126 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhcccc
Confidence 999999999999999999966666667899999999999986544
No 128
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.86 E-value=5e-21 Score=135.03 Aligned_cols=115 Identities=18% Similarity=0.322 Sum_probs=88.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE-EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI-KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
+.|++++|++|+|||||++++..+.+ ..+.++....+ ..+...+ ..+.+||++|+..+......++..+|+++++|
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 35899999999999999999986653 33344443322 2333333 56889999999888877777889999999999
Q ss_pred ECCChhhHHHHHH-HHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 114 DSADVKRFEESGF-ELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 114 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
|++++++|..+.. |+..+.+.. +++|+++||||+|+.+.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~ 120 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQD 120 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhC
Confidence 9999999999875 666665433 46999999999999653
No 129
>KOG0091|consensus
Probab=99.86 E-value=1.2e-21 Score=131.38 Aligned_cols=122 Identities=22% Similarity=0.397 Sum_probs=101.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE--EEEe---CCeEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK--SVQS---EGFKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~--~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
...++++++|++.+|||+|++.+..+.+ .-..||.|+.+- -++. ...++++|||+|+++|+.....||+..-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 3468999999999999999999998884 345788885432 1222 347899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCC-CCCCcEEEEEeCCCCCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEK-LTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~~~~ 157 (162)
++|||++++.+|+.+..|+.+...... +.++-+.+||+|+|+..-+..
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV 134 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV 134 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccc
Confidence 999999999999999999988776654 445667899999999876654
No 130
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.84 E-value=1.6e-20 Score=135.17 Aligned_cols=118 Identities=30% Similarity=0.440 Sum_probs=92.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCc-cCCcceeEEEEE--EeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDISH-ITPTQGFNIKSV--QSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
.+||+++|++|||||||++++....+.. +.++.+...... ... ...+.+|||+|+++++..+..++..+++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 3899999999999999999999988554 455555443322 222 47799999999999999999999999999999
Q ss_pred EECCChhhHHHHHH-HHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 113 IDSADVKRFEESGF-ELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 113 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|.++..++..+.. |...+.... ....|+++|+||+|+.....
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~ 128 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELA-PDDVPILLVGNKIDLFDEQS 128 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhC-CCCceEEEEecccccccchh
Confidence 99998555555544 555544433 24689999999999998864
No 131
>KOG0393|consensus
Probab=99.84 E-value=3.5e-21 Score=134.62 Aligned_cols=116 Identities=21% Similarity=0.345 Sum_probs=95.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEE-EEEe---CCeEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK-SVQS---EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~-~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
..+|++++|+.++|||+++..+..+. ...+.||.-.++. .+.. ..+++.+|||.|+++|.++++..|.++|++|+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 56899999999999999998877766 4456666543322 3333 34789999999999999999899999999999
Q ss_pred EEECCChhhHHHHHH-HHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 112 VIDSADVKRFEESGF-ELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 112 v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
||++.++.+|.++.. |+.++.... ++.|+++||+|.||+++
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDD 124 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhC
Confidence 999999999999766 777766655 68999999999999954
No 132
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.84 E-value=1.5e-19 Score=142.21 Aligned_cols=132 Identities=20% Similarity=0.349 Sum_probs=93.1
Q ss_pred HHHHHHhHHHHHHhhc-CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcce----eEEEEEEeCCeEEEEEeCCC
Q psy689 17 VKDLALGLLAILKKLR-SSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQG----FNIKSVQSEGFKLNVWDIGG 91 (162)
Q Consensus 17 ~~~~~~~~~~~~~~~~-~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~D~~G 91 (162)
+..+...+..++.... ......++|+++|++|||||||+|+|.+......++.++ .....+..++..+.+|||||
T Consensus 181 l~~~~~~l~~ll~~~~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG 260 (442)
T TIGR00450 181 LLSIIAELKDILNSYKLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAG 260 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCC
Confidence 3333344444443331 234567899999999999999999999876433333333 33445677888999999999
Q ss_pred CCCChhhH--------HhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 92 QRKIRPYW--------RNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 92 ~~~~~~~~--------~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+..+.... ..+++.+|++++|+|++++.+++.. |+..... .+.|+++|+||+|+.+.
T Consensus 261 ~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 261 IREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN 325 (442)
T ss_pred cccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc
Confidence 87654332 3577899999999999988776654 5554432 36799999999999754
No 133
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.84 E-value=7.1e-20 Score=126.73 Aligned_cols=117 Identities=27% Similarity=0.252 Sum_probs=81.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--c-cCCcceeEEEEEEeCCe-EEEEEeCCCCCC----ChhhHHh---hcccCCE
Q psy689 40 RILLLGLDNAGKTTILKTLASEDIS--H-ITPTQGFNIKSVQSEGF-KLNVWDIGGQRK----IRPYWRN---YFDNTDI 108 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~--~-~~~~~~~~~~~~~~~~~-~~~l~D~~G~~~----~~~~~~~---~~~~~d~ 108 (162)
.|+++|++|||||||+++|.+.... . ..++.......+...+. .+.+|||||+.. ....... .++.+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 5899999999999999999876521 1 11222223334455555 899999999632 1122222 3456999
Q ss_pred EEEEEECCCh-hhHHHHHHHHHHHhhCCC-CCCCcEEEEEeCCCCCCCCC
Q psy689 109 LIYVIDSADV-KRFEESGFELHELLSDEK-LTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 109 vl~v~d~~~~-~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~~~ 156 (162)
+++|+|++++ ++++....|...+..... ..+.|+++|+||+|+.+...
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~ 131 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE 131 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh
Confidence 9999999998 788888777766655432 24789999999999976543
No 134
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.83 E-value=3.8e-19 Score=126.97 Aligned_cols=120 Identities=22% Similarity=0.253 Sum_probs=83.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCC---ccCCcceeEEEEEEeCC-eEEEEEeCCCCCCChh--h------HHhh
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDIS---HITPTQGFNIKSVQSEG-FKLNVWDIGGQRKIRP--Y------WRNY 102 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~-~~~~l~D~~G~~~~~~--~------~~~~ 102 (162)
.+..++|+++|++|||||||++++.+.... ...++.......+...+ ..+.+|||||...... . ....
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 455689999999999999999999987621 12333334444454444 4899999999743211 1 1123
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 103 FDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 103 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+..+|++++|+|++++.++.....|...+.. ....++|+++|+||+|+.+..
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~-~~~~~~~viiV~NK~Dl~~~~ 169 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKE-LGAEDIPMILVLNKIDLLDDE 169 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHH-cCcCCCCEEEEEEccccCChH
Confidence 5689999999999988777766555443332 223468999999999997654
No 135
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.83 E-value=1.1e-19 Score=126.97 Aligned_cols=110 Identities=16% Similarity=0.223 Sum_probs=80.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--C------CccCC------cceeEEE----EE-----EeCCeEEEEEeCCCCCCCh
Q psy689 40 RILLLGLDNAGKTTILKTLASED--I------SHITP------TQGFNIK----SV-----QSEGFKLNVWDIGGQRKIR 96 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~--~------~~~~~------~~~~~~~----~~-----~~~~~~~~l~D~~G~~~~~ 96 (162)
+|+++|++++|||||+++|.+.. . ..+.+ +.|.+.. .+ ...+..+.+|||||+.++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998632 1 11111 1122211 12 2346789999999999999
Q ss_pred hhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 97 PYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 97 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
..+..+++.+|++++|+|+++..++.....|... .. .++|+++|+||+|+.+.
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~-~~----~~~~iiiv~NK~Dl~~~ 134 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLA-LE----NNLEIIPVINKIDLPSA 134 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHH-HH----cCCCEEEEEECCCCCcC
Confidence 9999999999999999999987665555444322 22 36899999999998653
No 136
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.83 E-value=3.3e-19 Score=120.86 Aligned_cols=117 Identities=27% Similarity=0.462 Sum_probs=88.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE--EEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK--SVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
.+||+++|++|||||||++++.+... ....++.+.... .+..++ ..+.+||+||+.++...+..+.+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999998872 223334443332 245566 7889999999999999988889999999999
Q ss_pred EECCCh-hhHHHHH-HHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 113 IDSADV-KRFEESG-FELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 113 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+|.... .++.... .+...+..... .+.|+++++||+|+....
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~ 124 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAK 124 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcch
Confidence 998776 5666655 45554444332 278999999999997753
No 137
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.83 E-value=2.2e-19 Score=123.29 Aligned_cols=108 Identities=21% Similarity=0.175 Sum_probs=76.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCc------cCCcceeEEEEEEeC-CeEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISH------ITPTQGFNIKSVQSE-GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~------~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
.|+++|++|||||||+++|.+..... ...+....+..+... +..+.+|||||++++......+++.+|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 58999999999999999998643111 122334444445554 67999999999998877667778899999999
Q ss_pred EECCC---hhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 113 IDSAD---VKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 113 ~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+|+++ .++..... . .... ...|+++|+||+|+.+.
T Consensus 82 ~d~~~~~~~~~~~~~~----~-~~~~--~~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 82 VAADEGIMPQTREHLE----I-LELL--GIKRGLVVLTKADLVDE 119 (164)
T ss_pred EECCCCccHhHHHHHH----H-HHHh--CCCcEEEEEECccccCH
Confidence 99986 22222211 1 1111 23499999999999754
No 138
>KOG0097|consensus
Probab=99.82 E-value=6.7e-20 Score=120.51 Aligned_cols=122 Identities=20% Similarity=0.332 Sum_probs=100.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCccC-CcceeE----EEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDISHIT-PTQGFN----IKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~~~~~-~~~~~~----~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
..+|.+++|+-|+|||.|+.++....+.... .++|+. ...+..+..++++|||.|+++|+...+.+++.+.+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 4689999999999999999998876633322 345544 44566678999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAGY 159 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~ 159 (162)
|||++.+.+++.+..|+...... -.++.-++++|||.|+..-+..-+
T Consensus 90 vyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~y 136 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTY 136 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcH
Confidence 99999999999999999887554 236788999999999988776543
No 139
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.82 E-value=4e-19 Score=136.16 Aligned_cols=117 Identities=25% Similarity=0.346 Sum_probs=84.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC---CccCCcceeEEEEEEe-CCeEEEEEeCCCCCC---------ChhhHHhh
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDI---SHITPTQGFNIKSVQS-EGFKLNVWDIGGQRK---------IRPYWRNY 102 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~---~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~---------~~~~~~~~ 102 (162)
...++|+++|.+|+|||||+|+|.+... ....+|.......+.. ++..+.+|||+|..+ +... ...
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~t-le~ 265 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRAT-LEE 265 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHH-HHH
Confidence 3458999999999999999999998762 2234555566666666 568999999999722 2221 224
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 103 FDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 103 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+..+|++++|+|++++.++.....|. .++......+.|+++|+||+|+.+.
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~-~~L~~l~~~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVE-KVLEELGAEDIPQLLVYNKIDLLDE 316 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHH-HHHHHhccCCCCEEEEEEeecCCCh
Confidence 78899999999999887766654443 2233322347899999999999753
No 140
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.82 E-value=3.3e-19 Score=123.24 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=78.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCc---cCCcceeEEEEEEeCCeEEEEEeCCCCCCCh---------hhHHhhcccCC
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISH---ITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR---------PYWRNYFDNTD 107 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~~~~~~d 107 (162)
+|+++|++|||||||++++.+..... ..++.......+...+..+.+|||||+.... .........+|
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 78999999999999999999876421 1123344444555567899999999974311 00111112368
Q ss_pred EEEEEEECCChhhH--HHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 108 ILIYVIDSADVKRF--EESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 108 ~vl~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++++|+|++++.++ .....|+..+.... .+.|+++|+||+|+.+...
T Consensus 82 ~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~ 130 (168)
T cd01897 82 AVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFED 130 (168)
T ss_pred cEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhh
Confidence 99999999887654 44445655554332 4789999999999976543
No 141
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.82 E-value=5.4e-19 Score=125.32 Aligned_cols=112 Identities=21% Similarity=0.281 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc--CCCCcc-------------CCcceeE----EEEEEeCCeEEEEEeCCCCCCChhhH
Q psy689 39 LRILLLGLDNAGKTTILKTLAS--EDISHI-------------TPTQGFN----IKSVQSEGFKLNVWDIGGQRKIRPYW 99 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~--~~~~~~-------------~~~~~~~----~~~~~~~~~~~~l~D~~G~~~~~~~~ 99 (162)
.+|+++|.+++|||||+++|.+ +.+... .++.+.+ ...+..++..+.+|||||+.++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999986 322111 1122322 23466678999999999999999999
Q ss_pred HhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 100 RNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 100 ~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
..+++.+|++++|+|+++.. +.....++..... .++|+++|+||+|+.+.+
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~ 133 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDAR 133 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCC
Confidence 99999999999999998732 2222333333332 368999999999997543
No 142
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.82 E-value=3.3e-19 Score=123.05 Aligned_cols=110 Identities=23% Similarity=0.190 Sum_probs=79.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCcc---CCcceeEEEEEEeC---CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISHI---TPTQGFNIKSVQSE---GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~~---~~~~~~~~~~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
.|+++|++|+|||||+++|........ .++.......+..+ +..+.+|||||+..+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999988764332 12222223334443 678999999999998888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
|+++....+. ...+..+.. .++|+++|+||+|+.+.
T Consensus 82 d~~~~~~~~~-~~~~~~~~~----~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 82 AADDGVMPQT-IEAIKLAKA----ANVPFIVALNKIDKPNA 117 (168)
T ss_pred ECCCCccHHH-HHHHHHHHH----cCCCEEEEEEceecccc
Confidence 9987432111 111222222 36899999999998754
No 143
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.81 E-value=3e-19 Score=119.85 Aligned_cols=114 Identities=28% Similarity=0.440 Sum_probs=88.0
Q ss_pred EEcCCCCCHHHHHHHHhcCCC--CccCCcceeEEEEEEeC----CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECC
Q psy689 43 LLGLDNAGKTTILKTLASEDI--SHITPTQGFNIKSVQSE----GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSA 116 (162)
Q Consensus 43 viG~~~sGKStli~~l~~~~~--~~~~~~~~~~~~~~~~~----~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~ 116 (162)
++|++|+|||||++++.+... ....++. ......... ...+.+||+||+..+...+..+++.+|++++|+|.+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 579999999999999998775 2333333 333333332 678999999999988888888899999999999999
Q ss_pred ChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 117 DVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
++.++.....|+..........+.|+++|+||+|+......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~ 120 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVV 120 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccch
Confidence 99888888777433333334468999999999999876554
No 144
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.81 E-value=8.4e-19 Score=119.42 Aligned_cols=110 Identities=25% Similarity=0.412 Sum_probs=80.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCccCCcce----eEEEEEEeCCeEEEEEeCCCCCCChhh--------HHhhcccC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQG----FNIKSVQSEGFKLNVWDIGGQRKIRPY--------WRNYFDNT 106 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~~~~~ 106 (162)
++|+++|++|+|||||++++.+.......+..+ .....+...+.++.+|||||..++... ...++..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 589999999999999999999876332222222 233455567789999999997665432 23466789
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 107 DILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 107 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|++++|+|++++.+......+.. ....|+++|+||+|+.+..
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~ 123 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDS 123 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcc
Confidence 99999999998766555443322 2478999999999998654
No 145
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.80 E-value=1.9e-18 Score=136.40 Aligned_cols=113 Identities=25% Similarity=0.422 Sum_probs=84.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCc----ceeEEEEEEeCCeEEEEEeCCCCCCChhh--------HHhhc
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPT----QGFNIKSVQSEGFKLNVWDIGGQRKIRPY--------WRNYF 103 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~~ 103 (162)
...++|+++|.+|+|||||+|+|.+......++. .......+..++.++.+|||||..++... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 3468999999999999999999998764322332 33344566778889999999998765432 23467
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 104 DNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 104 ~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+.+|++++|+|++++.++.....|. . ..+.|+++|+||+|+.+..
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~-~------~~~~piiiV~NK~DL~~~~ 337 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILE-E------LKDKPVIVVLNKADLTGEI 337 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHH-h------cCCCCcEEEEEhhhccccc
Confidence 8899999999999887766543332 2 2478999999999997654
No 146
>KOG0083|consensus
Probab=99.80 E-value=4.6e-21 Score=124.71 Aligned_cols=114 Identities=27% Similarity=0.466 Sum_probs=94.1
Q ss_pred EEcCCCCCHHHHHHHHhcCC--CCccCCcceeEEEE--EEe--CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECC
Q psy689 43 LLGLDNAGKTTILKTLASED--ISHITPTQGFNIKS--VQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSA 116 (162)
Q Consensus 43 viG~~~sGKStli~~l~~~~--~~~~~~~~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~ 116 (162)
++|++++|||.|+-++..+. .....+|.|+.+.. ++. ..+++++|||.||++|+.....|++++|+.+++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 68999999999987766555 34455677765543 333 3478999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 117 DVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
++.+|+++..|+.+|-.... ..+.++++|||+|+..++..
T Consensus 82 nkasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v 121 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAV 121 (192)
T ss_pred cchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhcc
Confidence 99999999999999877654 36789999999999775543
No 147
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=1.2e-18 Score=132.62 Aligned_cols=117 Identities=24% Similarity=0.282 Sum_probs=86.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC--Cc-cCCcceeEEEEEEe-CCeEEEEEeCCCCCC-------ChhhHHhhcccCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI--SH-ITPTQGFNIKSVQS-EGFKLNVWDIGGQRK-------IRPYWRNYFDNTD 107 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~--~~-~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~-------~~~~~~~~~~~~d 107 (162)
..|+++|.++||||||++++.+... .. ..+|.......+.. +..++.+||+||... ....+..+++.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 5689999999999999999987651 11 12344555556666 457899999999643 2223344667899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhCCC-CCCCcEEEEEeCCCCCCCC
Q psy689 108 ILIYVIDSADVKRFEESGFELHELLSDEK-LTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 108 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~~ 155 (162)
++++|+|+++.++++....|..++..... +.+.|+++|+||+|+.+..
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~ 287 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE 287 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch
Confidence 99999999987788888888777665432 3478999999999997654
No 148
>KOG0076|consensus
Probab=99.80 E-value=2.1e-20 Score=126.44 Aligned_cols=125 Identities=45% Similarity=0.743 Sum_probs=109.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC--------CCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED--------ISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTD 107 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 107 (162)
...+.++|+|+-++|||||+.++.... .....||.|.+..++...+..+.+||.+|++..+.+|..||..+|
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H 94 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAH 94 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhc
Confidence 345789999999999999998764332 355678899999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCCCc
Q psy689 108 ILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAGYH 160 (162)
Q Consensus 108 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~ 160 (162)
++++++|+++++.|+.....+.....+-...++|+++.+||.|+.+..+..|+
T Consensus 95 ~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El 147 (197)
T KOG0076|consen 95 GIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAEL 147 (197)
T ss_pred eeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHH
Confidence 99999999999999998888888777666679999999999999998877665
No 149
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.80 E-value=5.6e-19 Score=122.68 Aligned_cols=114 Identities=28% Similarity=0.337 Sum_probs=80.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCC--Ccc-CCcceeEEEEEEeC-CeEEEEEeCCCCCCC----hh---hHHhhcccCCEEEE
Q psy689 43 LLGLDNAGKTTILKTLASEDI--SHI-TPTQGFNIKSVQSE-GFKLNVWDIGGQRKI----RP---YWRNYFDNTDILIY 111 (162)
Q Consensus 43 viG~~~sGKStli~~l~~~~~--~~~-~~~~~~~~~~~~~~-~~~~~l~D~~G~~~~----~~---~~~~~~~~~d~vl~ 111 (162)
++|++|||||||++++.+... ..+ .+|.......+... +..+.+|||||.... .. .....++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 579999999999999998863 211 22333334455666 789999999996321 11 22345678999999
Q ss_pred EEECCCh------hhHHHHHHHHHHHhhCCC------CCCCcEEEEEeCCCCCCCCC
Q psy689 112 VIDSADV------KRFEESGFELHELLSDEK------LTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 112 v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~~iivv~nK~Dl~~~~~ 156 (162)
|+|+++. .++.....|...+..... ..+.|+++|+||+|+.....
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~ 137 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE 137 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH
Confidence 9999887 466666666666554432 14789999999999976544
No 150
>KOG0072|consensus
Probab=99.79 E-value=1.1e-19 Score=119.63 Aligned_cols=126 Identities=50% Similarity=0.875 Sum_probs=115.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
..++..+++++|--|+||||++.++--++...+.|+++.+..++...+.++++||++|+...++.|+-|+.+.|++++|+
T Consensus 14 g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVV 93 (182)
T KOG0072|consen 14 GPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVV 93 (182)
T ss_pred CCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEE
Confidence 34488999999999999999999988888888999999999999999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAGY 159 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~ 159 (162)
|.+|++....+...+..+++...+.+..+++++||.|........|
T Consensus 94 Dssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E 139 (182)
T KOG0072|consen 94 DSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSE 139 (182)
T ss_pred eccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHH
Confidence 9999999999999999999988888999999999999887655433
No 151
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=2.8e-18 Score=136.44 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=82.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeE----EEEEEeCCeEEEEEeCCCCCC--------ChhhHHhhcc
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFN----IKSVQSEGFKLNVWDIGGQRK--------IRPYWRNYFD 104 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~ 104 (162)
...+|+++|.+|||||||+|+|.+.......++++.+ ...+.+.+..+.+|||||... +......+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 3478999999999999999999987654444555543 334556778899999999763 2334456788
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 105 NTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 105 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
.+|++|+|+|+++..++.. ..+ ...++. .++|+++|+||+|+...
T Consensus 117 ~aD~il~VvD~~~~~s~~~-~~i-~~~l~~---~~~piilV~NK~Dl~~~ 161 (472)
T PRK03003 117 TADAVLFVVDATVGATATD-EAV-ARVLRR---SGKPVILAANKVDDERG 161 (472)
T ss_pred hCCEEEEEEECCCCCCHHH-HHH-HHHHHH---cCCCEEEEEECccCCcc
Confidence 9999999999998765433 222 232322 47899999999999653
No 152
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.79 E-value=4.4e-19 Score=119.60 Aligned_cols=96 Identities=22% Similarity=0.253 Sum_probs=68.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCC-----CChhhHHhhcccCCEEEEEEE
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQR-----KIRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-----~~~~~~~~~~~~~d~vl~v~d 114 (162)
||+++|++|||||||++++.+.... +.++.+. .+.. .+|||||+. .+..... .++.+|++++|+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~-----~~~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAV-----EYND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeE-----EEcC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence 8999999999999999999887642 3333332 2222 689999973 2222323 4789999999999
Q ss_pred CCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 115 SADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
++++.++... .| .... ..|+++|+||+|+.+
T Consensus 72 ~~~~~s~~~~-~~-~~~~------~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 72 ATDPESRFPP-GF-ASIF------VKPVIGLVTKIDLAE 102 (142)
T ss_pred CCCCCcCCCh-hH-HHhc------cCCeEEEEEeeccCC
Confidence 9998876542 23 2221 239999999999965
No 153
>KOG4252|consensus
Probab=99.79 E-value=4.9e-20 Score=125.49 Aligned_cols=121 Identities=18% Similarity=0.354 Sum_probs=103.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEE----EEEeCCeEEEEEeCCCCCCChhhHHhhcccCCE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK----SVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDI 108 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~----~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 108 (162)
..+..+|++|+|..++||||++++++.+- ...+..++|..+. .+...+.++.+||++|++.|......||+++.+
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa 95 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA 95 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence 45668999999999999999999999776 4456666664432 244456788899999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 109 LIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
.++||+.+|+.+|+....|...+.... ..+|.++|-||+|+.+...
T Consensus 96 ~vLVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~ 141 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQ 141 (246)
T ss_pred eEEEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhh
Confidence 999999999999999999999988765 4899999999999987654
No 154
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.78 E-value=2.8e-18 Score=117.22 Aligned_cols=106 Identities=24% Similarity=0.345 Sum_probs=75.4
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-ccC--CcceeEEEEEEeCCeEEEEEeCCCCCCChh------hHHhhcc--cCCEEEE
Q psy689 43 LLGLDNAGKTTILKTLASEDIS-HIT--PTQGFNIKSVQSEGFKLNVWDIGGQRKIRP------YWRNYFD--NTDILIY 111 (162)
Q Consensus 43 viG~~~sGKStli~~l~~~~~~-~~~--~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~~--~~d~vl~ 111 (162)
++|++|+|||||++++.+.... ... .+.......+..++..+.+|||||+..+.. .+..++. .+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5799999999999999887521 111 223334455666778999999999877654 2455554 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|+|+++++.. ..++..+.. .++|+++|+||+|+.+..
T Consensus 81 v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~ 117 (158)
T cd01879 81 VVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDEAEKR 117 (158)
T ss_pred EeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhhcccc
Confidence 9999875432 233333332 268999999999997654
No 155
>PRK15494 era GTPase Era; Provisional
Probab=99.78 E-value=4.8e-18 Score=129.88 Aligned_cols=114 Identities=19% Similarity=0.339 Sum_probs=79.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcce----eEEEEEEeCCeEEEEEeCCCCCCC-hhh-------HHhhc
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQG----FNIKSVQSEGFKLNVWDIGGQRKI-RPY-------WRNYF 103 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~D~~G~~~~-~~~-------~~~~~ 103 (162)
++..+|+++|++|||||||+|+|.+.....+++..+ .....+..++.++.+|||||.... ..+ ....+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 456799999999999999999999887544444333 333456667889999999998432 221 12346
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 104 DNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 104 ~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
..+|++++|+|.++ ++.....++...+.. .+.|+++|+||+|+.+.
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~ 175 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK 175 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc
Confidence 78999999999765 344544444333332 24577889999998643
No 156
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.78 E-value=3.9e-18 Score=126.79 Aligned_cols=108 Identities=21% Similarity=0.231 Sum_probs=75.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeE----EEEEEeCCeEEEEEeCCCCCCChh--------hHHhhcccCC
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFN----IKSVQSEGFKLNVWDIGGQRKIRP--------YWRNYFDNTD 107 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~~~d 107 (162)
+|+++|++|||||||+|+|.+......++.++.+ ......++.++.+|||||...... ....++..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 6899999999999999999998754434333322 222333557899999999754321 1244678999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 108 ILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 108 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
++++|+|+++..+.. .++...+.. .+.|+++|+||+|+..
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKF 121 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCC
Confidence 999999998866553 222222222 3689999999999974
No 157
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.78 E-value=8e-18 Score=118.06 Aligned_cols=109 Identities=20% Similarity=0.177 Sum_probs=82.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCccC-------------------CcceeEEEEEEeCCeEEEEEeCCCCCCChhhHH
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISHIT-------------------PTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWR 100 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~ 100 (162)
+|+++|.+|||||||++++.+....... .+.......+......+.+|||||..++...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999877633221 122233444566678999999999998888888
Q ss_pred hhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 101 NYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 101 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
.+++.+|++++|+|++++.+... ..++..... .+.|+++|+||+|+..
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVG 128 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcc
Confidence 89999999999999987554332 223333322 4789999999999986
No 158
>KOG0077|consensus
Probab=99.77 E-value=3.2e-19 Score=119.91 Aligned_cols=126 Identities=38% Similarity=0.632 Sum_probs=114.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEEC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
.+.-|++++|--++|||||++.|........-||...+.+.+...+.+++-+|++|+..-++.|..|+..+|++++.+|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda 97 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA 97 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence 44669999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCCCcc
Q psy689 116 ADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAGYHS 161 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~~ 161 (162)
-+.+.|......+...+..-.....|++|.+||.|..+.-+.++++
T Consensus 98 ~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~ 143 (193)
T KOG0077|consen 98 YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELR 143 (193)
T ss_pred hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHH
Confidence 9999999998888877776556789999999999999988766654
No 159
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.77 E-value=1.2e-17 Score=127.10 Aligned_cols=117 Identities=25% Similarity=0.296 Sum_probs=83.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC--Ccc-CCcceeEEEEEEeCC-eEEEEEeCCCCCCC-------hhhHHhhcccCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI--SHI-TPTQGFNIKSVQSEG-FKLNVWDIGGQRKI-------RPYWRNYFDNTD 107 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~--~~~-~~~~~~~~~~~~~~~-~~~~l~D~~G~~~~-------~~~~~~~~~~~d 107 (162)
..|+++|.++||||||++++..... ..+ .+|...+...+...+ .++.+||+||.... ......++..++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 5689999999999999999987651 111 234444555566666 89999999997432 122333456799
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHhhCC-CCCCCcEEEEEeCCCCCCCC
Q psy689 108 ILIYVIDSADV---KRFEESGFELHELLSDE-KLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 108 ~vl~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~~iivv~nK~Dl~~~~ 155 (162)
++++|+|+++. +.++....|..++.... ...+.|++||+||+|+.+..
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~ 289 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE 289 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH
Confidence 99999999876 56666666666554432 23578999999999997653
No 160
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.77 E-value=9.2e-18 Score=114.35 Aligned_cols=109 Identities=18% Similarity=0.271 Sum_probs=76.4
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCccCCcc----eeEEEEEEeCCeEEEEEeCCCCCCChh--------hHHhhcccCCEE
Q psy689 42 LLLGLDNAGKTTILKTLASEDISHITPTQ----GFNIKSVQSEGFKLNVWDIGGQRKIRP--------YWRNYFDNTDIL 109 (162)
Q Consensus 42 ~viG~~~sGKStli~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~~~d~v 109 (162)
+++|.+|+|||||++++.+......++.. ..........+..+.+|||||...+.. .....++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 47899999999999999987522222222 223345556778999999999888654 334567889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
++|+|.++..+... .++....+. .+.|+++|+||+|+.+..
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~ 121 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEE 121 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChH
Confidence 99999976544332 223333332 258999999999998754
No 161
>PRK11058 GTPase HflX; Provisional
Probab=99.77 E-value=2.4e-17 Score=129.15 Aligned_cols=115 Identities=21% Similarity=0.266 Sum_probs=80.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC---ccCCcceeEEEEEEeCC-eEEEEEeCCCCCCC--hhhH------HhhcccC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDIS---HITPTQGFNIKSVQSEG-FKLNVWDIGGQRKI--RPYW------RNYFDNT 106 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~-~~~~l~D~~G~~~~--~~~~------~~~~~~~ 106 (162)
.+|+++|.+|||||||+|+|.+.... ...+|.......+...+ ..+.+|||+|..+. ...+ ...++.+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 68999999999999999999987631 22344444555565554 38899999997432 2222 2346889
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 107 DILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 107 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
|++++|+|++++.++.....|.. ++......++|+++|+||+|+...
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v~~-iL~el~~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAVNT-VLEEIDAHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHHHH-HHHHhccCCCCEEEEEEcccCCCc
Confidence 99999999999877666543322 222222247899999999999753
No 162
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=9.2e-18 Score=133.53 Aligned_cols=114 Identities=22% Similarity=0.327 Sum_probs=82.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeE----EEEEEeCCeEEEEEeCCCCCCC----------hhhH-H
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFN----IKSVQSEGFKLNVWDIGGQRKI----------RPYW-R 100 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~D~~G~~~~----------~~~~-~ 100 (162)
....+|+++|.+|||||||+|+|++......++..+.+ ...+..++..+.+|||||..+. .... .
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 35689999999999999999999988743333333322 3445667788999999996322 1111 2
Q ss_pred hhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 101 NYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 101 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
.+++.+|++++|+|+++..+++... ++..+.. .+.|+++|+||+|+.+.
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDE 337 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCCh
Confidence 3578999999999999887766653 3333332 47899999999999753
No 163
>KOG3883|consensus
Probab=99.76 E-value=3.1e-17 Score=109.17 Aligned_cols=125 Identities=24% Similarity=0.354 Sum_probs=97.1
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCCC---CccCCcceeEEE-EEEeC---CeEEEEEeCCCCCCC-hhhHHhhcc
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASEDI---SHITPTQGFNIK-SVQSE---GFKLNVWDIGGQRKI-RPYWRNYFD 104 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~~---~~~~~~~~~~~~-~~~~~---~~~~~l~D~~G~~~~-~~~~~~~~~ 104 (162)
....+..||++.|..++|||+++.++.+++. ....||....+. .++.+ .-.+.++||.|.... ..+.+.|++
T Consensus 4 ~kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q 83 (198)
T KOG3883|consen 4 AKMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQ 83 (198)
T ss_pred hhhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhc
Confidence 3456788999999999999999999988772 334555553332 33332 257899999998887 455677889
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 105 NTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 105 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
-+|++++|||..++++|+.+...-.+|-+......+||++.+||+|+.+++..
T Consensus 84 ~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~v 136 (198)
T KOG3883|consen 84 FADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREV 136 (198)
T ss_pred cCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhc
Confidence 99999999999999999998776666665555567999999999999876654
No 164
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.75 E-value=1.6e-17 Score=113.24 Aligned_cols=109 Identities=24% Similarity=0.399 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCccCC----cceeEEEEEEeCCeEEEEEeCCCCCCChh------hHHhhc--ccC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDISHITP----TQGFNIKSVQSEGFKLNVWDIGGQRKIRP------YWRNYF--DNT 106 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~--~~~ 106 (162)
++|+++|.|+||||||+|+|++... .... |.......+...+..+.++|+||.-.... ....++ .+.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~-~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQ-KVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSE-EEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc-eecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence 5899999999999999999999982 2222 33445556777889999999999544322 223333 578
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 107 DILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 107 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|++++|+|+++.+ +......++.. .++|+++|+||+|.....
T Consensus 80 D~ii~VvDa~~l~---r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 80 DLIIVVVDATNLE---RNLYLTLQLLE----LGIPVVVVLNKMDEAERK 121 (156)
T ss_dssp SEEEEEEEGGGHH---HHHHHHHHHHH----TTSSEEEEEETHHHHHHT
T ss_pred CEEEEECCCCCHH---HHHHHHHHHHH----cCCCEEEEEeCHHHHHHc
Confidence 9999999998744 33333344443 378999999999986544
No 165
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.75 E-value=2.7e-17 Score=119.99 Aligned_cols=111 Identities=24% Similarity=0.212 Sum_probs=83.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-----C---------cc-------CCcceeEEEEEEeCCeEEEEEeCCCCCCChhh
Q psy689 40 RILLLGLDNAGKTTILKTLASEDI-----S---------HI-------TPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPY 98 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~-----~---------~~-------~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 98 (162)
+|+++|+.|+|||||+++|++..- . .+ ..+.......+.+++.++.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 488999999999999999975320 0 00 01122334567778899999999999999988
Q ss_pred HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 99 WRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 99 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+..+++.+|++++|+|+++.... ....++..... .++|+++++||+|+.+.+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~ 132 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGAD 132 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCC
Confidence 88999999999999999875443 33344444433 368999999999998654
No 166
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.75 E-value=1.9e-17 Score=115.97 Aligned_cols=114 Identities=20% Similarity=0.342 Sum_probs=76.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEE--EEEeCCeEEEEEeCCCCCC----------ChhhHHh
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK--SVQSEGFKLNVWDIGGQRK----------IRPYWRN 101 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~--~~~~~~~~~~l~D~~G~~~----------~~~~~~~ 101 (162)
..+..+|+++|++|+|||||++++.+.. ...++++.+.+.. .+..+ ..+.+|||||... +......
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHHHH
Confidence 3567899999999999999999999875 4455555554332 22222 3789999999532 2222334
Q ss_pred hcc---cCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 102 YFD---NTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 102 ~~~---~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+++ .++++++|+|.+++-+.... .+...... .+.|+++|+||+|+...
T Consensus 94 ~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 94 YLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKK 144 (179)
T ss_pred HHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCH
Confidence 444 35899999999875443333 22222222 36899999999999753
No 167
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=6.4e-17 Score=111.65 Aligned_cols=112 Identities=21% Similarity=0.306 Sum_probs=76.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCccCCc----ceeEEEEEEeCCeEEEEEeCCCCCCChh-----------hHHhh
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDISHITPT----QGFNIKSVQSEGFKLNVWDIGGQRKIRP-----------YWRNY 102 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~D~~G~~~~~~-----------~~~~~ 102 (162)
+++|+++|++|+|||||++++.+......... .......+...+..+.+||+||...... .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 57899999999999999999988752221211 1222234555667889999999754411 11234
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 103 FDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 103 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+..+|++++|+|++++.+.... .++..... .+.|+++++||+|+.+.
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEK 128 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCc
Confidence 6789999999999887664443 22233222 36799999999999866
No 168
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=3.8e-17 Score=128.91 Aligned_cols=110 Identities=21% Similarity=0.309 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCccCCcce----eEEEEEEeCCeEEEEEeCCCCCC--------ChhhHHhhcccC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQG----FNIKSVQSEGFKLNVWDIGGQRK--------IRPYWRNYFDNT 106 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~~~ 106 (162)
.+|+++|.+|||||||+|+|.+.........++ .....+.+.+..+.+|||||+.. +......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 479999999999999999999876433333333 33455667789999999999887 223345567899
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 107 DILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 107 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
|++++|+|+++..+... .++...++. .+.|+++|+||+|+.+
T Consensus 82 d~il~vvd~~~~~~~~~--~~~~~~l~~---~~~piilv~NK~D~~~ 123 (435)
T PRK00093 82 DVILFVVDGRAGLTPAD--EEIAKILRK---SNKPVILVVNKVDGPD 123 (435)
T ss_pred CEEEEEEECCCCCCHHH--HHHHHHHHH---cCCcEEEEEECccCcc
Confidence 99999999987543322 222222222 2789999999999754
No 169
>PRK04213 GTP-binding protein; Provisional
Probab=99.75 E-value=1.9e-18 Score=123.04 Aligned_cols=116 Identities=21% Similarity=0.359 Sum_probs=71.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCC-----------CCChhhHHhhcc
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQ-----------RKIRPYWRNYFD 104 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~-----------~~~~~~~~~~~~ 104 (162)
...++|+++|++|||||||++++.+.... ....++.+..........+.+|||||. +.+...+..++.
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYDWGDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIE 85 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEeecceEEEeCCccccccccCHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999987632 223334333222222226899999993 444444444443
Q ss_pred ----cCCEEEEEEECCChhhHH---------HHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 105 ----NTDILIYVIDSADVKRFE---------ESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 105 ----~~d~vl~v~d~~~~~~~~---------~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
.++++++|+|.++...+. .....+...... .++|+++|+||+|+.+..
T Consensus 86 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~ 146 (201)
T PRK04213 86 DNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR 146 (201)
T ss_pred hhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH
Confidence 457888999986532210 001111222221 378999999999996543
No 170
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.74 E-value=2.7e-17 Score=129.54 Aligned_cols=111 Identities=23% Similarity=0.379 Sum_probs=80.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCccCCccee----EEEEEEeCCeEEEEEeCCCCCC--------ChhhHHhhcccCC
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGF----NIKSVQSEGFKLNVWDIGGQRK--------IRPYWRNYFDNTD 107 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~~~d 107 (162)
+|+++|.+|||||||+|+|.+.......+.++. ....+.+.+..+.+|||||... +......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 589999999999999999998774434444443 3456677888999999999633 3334556788999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 108 ILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 108 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
++++|+|+++..+... ..+...++. .+.|+++|+||+|+....
T Consensus 81 ~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~ 123 (429)
T TIGR03594 81 VILFVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKED 123 (429)
T ss_pred EEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCccc
Confidence 9999999987543222 222333322 368999999999987644
No 171
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.74 E-value=7.3e-17 Score=110.46 Aligned_cols=111 Identities=23% Similarity=0.329 Sum_probs=75.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcce----eEEEEEEeCCeEEEEEeCCCCCCChh--------hHHhhccc
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDISHITPTQG----FNIKSVQSEGFKLNVWDIGGQRKIRP--------YWRNYFDN 105 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~~ 105 (162)
..+|+++|++|||||||++++.+.......+... .....+...+..+.+|||||...... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999876332222222 11223344568899999999765432 22345788
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 106 TDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 106 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
+|++++|+|++++. .....++.+.+.. .+.|+++|+||+|+..
T Consensus 83 ~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 83 VDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVK 125 (168)
T ss_pred CCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccc
Confidence 99999999998762 2223333333332 2679999999999984
No 172
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.74 E-value=4.1e-17 Score=115.53 Aligned_cols=111 Identities=18% Similarity=0.197 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC------CCc----cCCcceeEEEEEEeC--------------CeEEEEEeCCCCCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASED------ISH----ITPTQGFNIKSVQSE--------------GFKLNVWDIGGQRK 94 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~------~~~----~~~~~~~~~~~~~~~--------------~~~~~l~D~~G~~~ 94 (162)
++|+++|++++|||||+++|.... ... ...|.+.....+... +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 579999999999999999998631 110 112333333333332 67899999999976
Q ss_pred ChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 95 IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 95 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+..........+|++++|+|+++.........+. +... .+.|+++|+||+|+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPE 135 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCH
Confidence 5444444456789999999998754333322222 1111 25699999999999743
No 173
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.74 E-value=8.6e-17 Score=119.25 Aligned_cols=112 Identities=19% Similarity=0.203 Sum_probs=81.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC--CCc----------------c-------CCcceeEEEEEEeCCeEEEEEeCCCCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASED--ISH----------------I-------TPTQGFNIKSVQSEGFKLNVWDIGGQR 93 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~--~~~----------------~-------~~~~~~~~~~~~~~~~~~~l~D~~G~~ 93 (162)
-+|+++|++|+|||||+++|++.. ... + ..+.......+.+.+.++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999997532 110 0 011123344677788999999999999
Q ss_pred CChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 94 ~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+|.......++.+|++++|+|+++.... ....++..... .++|+++++||+|+.+..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~----~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL----RGIPIITFINKLDREGRD 139 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh----cCCCEEEEEECCccCCCC
Confidence 9887777788999999999999865332 22233333322 378999999999987664
No 174
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=3.1e-17 Score=112.37 Aligned_cols=121 Identities=23% Similarity=0.368 Sum_probs=92.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCc-------------cCCcceeEEEEEEeCC-eEEEEEeCCCCCCChhhHHh
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISH-------------ITPTQGFNIKSVQSEG-FKLNVWDIGGQRKIRPYWRN 101 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~-------------~~~~~~~~~~~~~~~~-~~~~l~D~~G~~~~~~~~~~ 101 (162)
-...||+++|+.++||||+++++....... ...|....+......+ ..+++++||||.+++.+|..
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~ 87 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEI 87 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHH
Confidence 346899999999999999999998765211 1123344455555555 89999999999999999999
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCCCc
Q psy689 102 YFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAGYH 160 (162)
Q Consensus 102 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~~ 160 (162)
+++.+.+.++++|.+++..+ .+.. +..+.... ..+|++|+.||.|+.+..+++.+
T Consensus 88 l~~ga~gaivlVDss~~~~~-~a~~-ii~f~~~~--~~ip~vVa~NK~DL~~a~ppe~i 142 (187)
T COG2229 88 LSRGAVGAIVLVDSSRPITF-HAEE-IIDFLTSR--NPIPVVVAINKQDLFDALPPEKI 142 (187)
T ss_pred HhCCcceEEEEEecCCCcch-HHHH-HHHHHhhc--cCCCEEEEeeccccCCCCCHHHH
Confidence 99999999999999998887 3322 23333332 13999999999999999988654
No 175
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=1.3e-16 Score=125.71 Aligned_cols=112 Identities=21% Similarity=0.326 Sum_probs=80.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeE----EEEEEeCCeEEEEEeCCCCCCChhh-----------HH
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFN----IKSVQSEGFKLNVWDIGGQRKIRPY-----------WR 100 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~D~~G~~~~~~~-----------~~ 100 (162)
...++++++|.+|+|||||++++++......++..+.+ ...+..++..+.+|||||..+.... ..
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 34689999999999999999999987633333333332 2344556778999999997654322 13
Q ss_pred hhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 101 NYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 101 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
.+++.+|++++|+|++++.+.+.. .++..+.. .+.|+++|+||+|+.
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDL-RIAGLILE----AGKALVIVVNKWDLV 296 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH----cCCcEEEEEECcccC
Confidence 467889999999999987665543 23333332 368999999999997
No 176
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.73 E-value=1.1e-16 Score=125.08 Aligned_cols=115 Identities=25% Similarity=0.268 Sum_probs=80.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC--Cc-cCCcceeEEEEEEeC-CeEEEEEeCCCCCC----Chhh---HHhhcccCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI--SH-ITPTQGFNIKSVQSE-GFKLNVWDIGGQRK----IRPY---WRNYFDNTD 107 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~--~~-~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~----~~~~---~~~~~~~~d 107 (162)
..|+++|.++||||||++++++... .. ..+|...+...+... +.++.+||+||... ...+ ...++.+++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 3799999999999999999997652 11 223444455555555 68899999999643 1122 233456699
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHhhCCC-CCCCcEEEEEeCCCCCC
Q psy689 108 ILIYVIDSADV---KRFEESGFELHELLSDEK-LTGVPLLVYANKQDLLG 153 (162)
Q Consensus 108 ~vl~v~d~~~~---~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~ 153 (162)
++++|+|+++. +.++....|..++..... +.+.|++||+||+|+.+
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~ 288 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE 288 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC
Confidence 99999999754 556666666555554322 35789999999999843
No 177
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.73 E-value=2.8e-16 Score=121.50 Aligned_cols=136 Identities=21% Similarity=0.375 Sum_probs=97.4
Q ss_pred HHHHHHhHHHHHHhhc--CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcce----eEEEEEEeCCeEEEEEeCC
Q psy689 17 VKDLALGLLAILKKLR--SSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQG----FNIKSVQSEGFKLNVWDIG 90 (162)
Q Consensus 17 ~~~~~~~~~~~~~~~~--~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~D~~ 90 (162)
++.+...+..++.... ......+|++++|+||+|||||+|.|++.+..-.+..+| +-...+..+++++.+.||+
T Consensus 194 l~~~~~~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTA 273 (454)
T COG0486 194 LEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTA 273 (454)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecC
Confidence 4444445544444333 235568999999999999999999999999655555555 4456778899999999999
Q ss_pred CCCCChhhH--------HhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy689 91 GQRKIRPYW--------RNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAG 158 (162)
Q Consensus 91 G~~~~~~~~--------~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~ 158 (162)
|.+...... ...++++|.+|+|+|.+.+..-.. ..... ....+.|+++|.||.|+.......
T Consensus 274 GiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d--~~~~~----~~~~~~~~i~v~NK~DL~~~~~~~ 343 (454)
T COG0486 274 GIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKED--LALIE----LLPKKKPIIVVLNKADLVSKIELE 343 (454)
T ss_pred CcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhh--HHHHH----hcccCCCEEEEEechhcccccccc
Confidence 988765543 345788999999999988522111 11111 112478999999999999876544
No 178
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.73 E-value=4.2e-18 Score=118.49 Aligned_cols=121 Identities=31% Similarity=0.473 Sum_probs=77.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEe---CCeEEEEEeCCCCCCChhhHHh---hcccCCEEE
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQS---EGFKLNVWDIGGQRKIRPYWRN---YFDNTDILI 110 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~D~~G~~~~~~~~~~---~~~~~d~vl 110 (162)
++-.|+++||+|||||+|+.+|.++....+.+....+.. +.. .+..+.++|+||+.+.+..... +...+-+|+
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~-~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIA-YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEE-CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCce-EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 345799999999999999999999875444444433332 222 3468999999999999875444 478899999
Q ss_pred EEEECCC-hhhHHHHHHHHHHHhhCC--CCCCCcEEEEEeCCCCCCCCCCC
Q psy689 111 YVIDSAD-VKRFEESGFELHELLSDE--KLTGVPLLVYANKQDLLGAAPAG 158 (162)
Q Consensus 111 ~v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~~iivv~nK~Dl~~~~~~~ 158 (162)
+|+|.+. ......+...+..++... ....+|++|+.||.|+....+..
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~ 131 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPK 131 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HH
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHH
Confidence 9999863 445555656655555432 23579999999999998876543
No 179
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.73 E-value=1.5e-16 Score=128.90 Aligned_cols=115 Identities=21% Similarity=0.228 Sum_probs=82.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCccC-C--cceeEEEEEEeCCe-EEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHIT-P--TQGFNIKSVQSEGF-KLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~-~--~~~~~~~~~~~~~~-~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
.+++.+|+++|+.++|||||++++.+....... + |.......+.+.+. .+.+|||||+..|..++...+..+|+++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 456789999999999999999999887643221 1 22222233444443 8999999999999999988899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+|+|+++...-+. ...+.... ..++|+++++||+|+.+.
T Consensus 164 LVVda~dgv~~qT-~e~i~~~~----~~~vPiIVviNKiDl~~~ 202 (587)
T TIGR00487 164 LVVAADDGVMPQT-IEAISHAK----AANVPIIVAINKIDKPEA 202 (587)
T ss_pred EEEECCCCCCHhH-HHHHHHHH----HcCCCEEEEEECcccccC
Confidence 9999886322111 12222221 147899999999999753
No 180
>PRK00089 era GTPase Era; Reviewed
Probab=99.73 E-value=9.9e-17 Score=120.48 Aligned_cols=112 Identities=22% Similarity=0.334 Sum_probs=77.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEE---E-EEEeCCeEEEEEeCCCCCCChh--------hHHhhcc
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNI---K-SVQSEGFKLNVWDIGGQRKIRP--------YWRNYFD 104 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~---~-~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~ 104 (162)
+.-.|+++|++|||||||+|++.+......++.+..+. . ....++.++.+|||||...... .....+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 45579999999999999999999887544444333222 1 2233558999999999755432 2234568
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 105 NTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 105 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
.+|++++|+|+++.. .....++...+.. .+.|+++|+||+|+..
T Consensus 84 ~~D~il~vvd~~~~~--~~~~~~i~~~l~~---~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 84 DVDLVLFVVDADEKI--GPGDEFILEKLKK---VKTPVILVLNKIDLVK 127 (292)
T ss_pred cCCEEEEEEeCCCCC--ChhHHHHHHHHhh---cCCCEEEEEECCcCCC
Confidence 899999999998732 2223333333332 3689999999999974
No 181
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=1.1e-16 Score=126.75 Aligned_cols=118 Identities=23% Similarity=0.247 Sum_probs=80.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC--Cc-cCCcceeEEEEEEeCCeEEEEEeCCCCCCCh-------hhHHhhcccCC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDI--SH-ITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR-------PYWRNYFDNTD 107 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d 107 (162)
-..|+++|.++||||||+++|.+... .. ..+|.......+...+.++.+||+||..... .....++..+|
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 36799999999999999999987652 11 2344555666777788899999999964211 11233567899
Q ss_pred EEEEEEECCCh----hhHHHHHHHHHHHhhCC----------CCCCCcEEEEEeCCCCCCCC
Q psy689 108 ILIYVIDSADV----KRFEESGFELHELLSDE----------KLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 108 ~vl~v~d~~~~----~~~~~~~~~~~~~~~~~----------~~~~~~iivv~nK~Dl~~~~ 155 (162)
++++|+|+++. +.++....+..++.... .....|++||+||+|+.+..
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~ 300 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR 300 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH
Confidence 99999999752 33334333333332221 23478999999999997543
No 182
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.71 E-value=7.6e-16 Score=100.54 Aligned_cols=103 Identities=22% Similarity=0.389 Sum_probs=70.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCcc----CCcceeEEEEEEeCCeEEEEEeCCCCCCChh---------hHHhhcccC
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISHI----TPTQGFNIKSVQSEGFKLNVWDIGGQRKIRP---------YWRNYFDNT 106 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---------~~~~~~~~~ 106 (162)
+|+++|.+|+|||||+|+|++...... ..|.......+...+..+.++||||...... .....+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 689999999999999999998642222 2233344556677888999999999654311 123344789
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeC
Q psy689 107 DILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANK 148 (162)
Q Consensus 107 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK 148 (162)
|++++|+|.+++.. ......+..+ + .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred CEEEEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence 99999999877322 1222222333 2 47899999998
No 183
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.71 E-value=3.2e-16 Score=129.92 Aligned_cols=115 Identities=23% Similarity=0.294 Sum_probs=83.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCcc-CC--cceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHI-TP--TQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~-~~--~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
.+++..|+++|..++|||||+++|........ .. |.......+.+.+..+.+|||||+..|..++...++.+|++++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 56788999999999999999999987653221 11 1112223455667899999999999999999888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
|+|+++...-+.. ..+.... ..++|++|++||+|+.+.
T Consensus 367 VVdAddGv~~qT~-e~i~~a~----~~~vPiIVviNKiDl~~a 404 (787)
T PRK05306 367 VVAADDGVMPQTI-EAINHAK----AAGVPIIVAINKIDKPGA 404 (787)
T ss_pred EEECCCCCCHhHH-HHHHHHH----hcCCcEEEEEECcccccc
Confidence 9999873221111 1122221 147899999999999653
No 184
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.71 E-value=1e-16 Score=130.16 Aligned_cols=112 Identities=18% Similarity=0.195 Sum_probs=82.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC--------CCccC------CcceeEEE----EEEe-----CCeEEEEEeCCCCCC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASED--------ISHIT------PTQGFNIK----SVQS-----EGFKLNVWDIGGQRK 94 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~--------~~~~~------~~~~~~~~----~~~~-----~~~~~~l~D~~G~~~ 94 (162)
.-+++++|+.++|||||+++|+... ...+. ...|.+.. .+.+ ..+.+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3489999999999999999997642 01111 12233322 2222 237899999999999
Q ss_pred ChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 95 IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 95 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
|...+..+++.+|++++|+|+++..+.+....|+... . .++|+++|+||+|+.+.
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~ 137 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSA 137 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCcc
Confidence 9999999999999999999999876666655554433 2 36799999999999754
No 185
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.70 E-value=1.4e-16 Score=115.20 Aligned_cols=115 Identities=27% Similarity=0.445 Sum_probs=76.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC----CCccCCcceeEEEEEEe-CCeEEEEEeCCCCCCChhh-----HHhhcccCCEE
Q psy689 40 RILLLGLDNAGKTTILKTLASED----ISHITPTQGFNIKSVQS-EGFKLNVWDIGGQRKIRPY-----WRNYFDNTDIL 109 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~----~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~-----~~~~~~~~d~v 109 (162)
||+++|+.+|||||+.+.++.+. .....+|...+...+.. ....+++||+||+..+... ....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 79999999999999999888765 33445677777777764 5689999999999877554 46678999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhC--CCCCCCcEEEEEeCCCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSD--EKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~iivv~nK~Dl~~~~ 155 (162)
++|+|+.+.+ +......+...+.. ...+++.+.|+.+|+|+..+.
T Consensus 81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSED 127 (232)
T ss_dssp EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HH
T ss_pred EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHH
Confidence 9999998543 33333333332222 123689999999999997643
No 186
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.70 E-value=2.2e-16 Score=130.98 Aligned_cols=113 Identities=19% Similarity=0.271 Sum_probs=81.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEE----EEEeCCeEEEEEeCCCCCC--------ChhhHHhhcc
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIK----SVQSEGFKLNVWDIGGQRK--------IRPYWRNYFD 104 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~ 104 (162)
...+|+++|.++||||||+|+|++.......+++|.+.. ...+.+..+.+|||||... +......+++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 347899999999999999999998775555555665443 3445678999999999764 2233455788
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 105 NTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 105 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
.+|++++|+|+++.-. .....+...++. .++|+++|+||+|+...
T Consensus 354 ~aD~iL~VvDa~~~~~--~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 354 LADAVVFVVDGQVGLT--STDERIVRMLRR---AGKPVVLAVNKIDDQAS 398 (712)
T ss_pred hCCEEEEEEECCCCCC--HHHHHHHHHHHh---cCCCEEEEEECcccccc
Confidence 9999999999976322 322333333332 47899999999998653
No 187
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.70 E-value=3.9e-16 Score=112.27 Aligned_cols=108 Identities=19% Similarity=0.283 Sum_probs=76.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCcc------------------CCcceeEE----EEEE-----eCCeEEEEEeCCCC
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISHI------------------TPTQGFNI----KSVQ-----SEGFKLNVWDIGGQ 92 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~~------------------~~~~~~~~----~~~~-----~~~~~~~l~D~~G~ 92 (162)
+|+++|+.|+|||||+++|+....... ....+.+. ..+. .....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999986431110 01111111 1121 22478999999999
Q ss_pred CCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 93 ~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
.++......++..+|++++|+|+++..+... ..++..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 9998888888999999999999987655432 233333332 258999999999986
No 188
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.70 E-value=2.4e-16 Score=111.55 Aligned_cols=115 Identities=22% Similarity=0.347 Sum_probs=76.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEEE-EEeCCeEEEEEeCCCCCC----------ChhhHHhh
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIKS-VQSEGFKLNVWDIGGQRK----------IRPYWRNY 102 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~~----------~~~~~~~~ 102 (162)
.....+|+++|++|+|||||++++.+.. ...++++.+.+... ....+..+.+|||||... +......+
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 100 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence 3457899999999999999999999875 55556666544321 112247899999999532 22333444
Q ss_pred cccC---CEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 103 FDNT---DILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 103 ~~~~---d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++.+ +++++++|.+++.+... .++...+.. .+.|+++++||+|+...
T Consensus 101 ~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 101 LRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKK 150 (196)
T ss_pred HHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCH
Confidence 5544 67888899876543222 222222222 36899999999999754
No 189
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.70 E-value=2.1e-16 Score=113.31 Aligned_cols=110 Identities=20% Similarity=0.144 Sum_probs=73.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCcc----------------------------------CCcceeEEEEEEeCCeEEE
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISHI----------------------------------TPTQGFNIKSVQSEGFKLN 85 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~ 85 (162)
+|+++|.+|+|||||+++|++..-... ..|.......+.+.+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999975431100 0112222334556778999
Q ss_pred EEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 86 VWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 86 l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
+|||||+.++.......++.+|++++|+|+++...-.. ...+ .+.... ...++++|+||+|+.+
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~-~~~~~~--~~~~iIvviNK~D~~~ 144 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHS-YILSLL--GIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHH-HHHHHc--CCCcEEEEEEchhccc
Confidence 99999998887666667889999999999986432111 1111 122211 1346888999999975
No 190
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=6.5e-16 Score=114.66 Aligned_cols=131 Identities=19% Similarity=0.253 Sum_probs=96.0
Q ss_pred HHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC---CCccCCcceeEEEEEEeCCeEEEEEeCCCCCCCh-----
Q psy689 25 LAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED---ISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR----- 96 (162)
Q Consensus 25 ~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----- 96 (162)
...+++++.-.+...+++|-|.||||||||++++.+.. .+...+|.++....+..+..+++++||||.-+..
T Consensus 155 r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN 234 (346)
T COG1084 155 RDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERN 234 (346)
T ss_pred HHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhc
Confidence 55677778888899999999999999999999999887 3344567788888999999999999999943321
Q ss_pred hh---HHhhccc-CCEEEEEEECCChh--hHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy689 97 PY---WRNYFDN-TDILIYVIDSADVK--RFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAG 158 (162)
Q Consensus 97 ~~---~~~~~~~-~d~vl~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~ 158 (162)
.. ....++. .++|++++|.+..+ +.+.-...+.++... -+.|+++|.||.|+.+....+
T Consensus 235 ~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~ 299 (346)
T COG1084 235 EIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLE 299 (346)
T ss_pred HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHH
Confidence 11 1112222 48899999987654 334444455555443 248999999999998665443
No 191
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.70 E-value=4.9e-16 Score=109.70 Aligned_cols=111 Identities=25% Similarity=0.310 Sum_probs=81.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCC--Cc-------------------cCCcceeEEEEEE--eCCeEEEEEeCCCCC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDI--SH-------------------ITPTQGFNIKSVQ--SEGFKLNVWDIGGQR 93 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~--~~-------------------~~~~~~~~~~~~~--~~~~~~~l~D~~G~~ 93 (162)
+..+|+++|+.++|||||+.+|++... .. ..-+.......+. .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 457899999999999999999975431 10 1123334455666 778999999999999
Q ss_pred CChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 94 ~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
+|.......++.+|++++|+|+.+.-... ....+..+.. .++|+++|+||+|+.
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~----~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE----LGIPIIVVLNKMDLI 135 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH----TT-SEEEEEETCTSS
T ss_pred ceeecccceecccccceeeeecccccccc-cccccccccc----cccceEEeeeeccch
Confidence 99888888899999999999998653322 2222333333 377899999999997
No 192
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.70 E-value=4.4e-16 Score=120.82 Aligned_cols=116 Identities=27% Similarity=0.292 Sum_probs=80.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC--Cc-cCCcceeEEEEEEeCC-eEEEEEeCCCCCCCh-------hhHHhhcccCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI--SH-ITPTQGFNIKSVQSEG-FKLNVWDIGGQRKIR-------PYWRNYFDNTD 107 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~--~~-~~~~~~~~~~~~~~~~-~~~~l~D~~G~~~~~-------~~~~~~~~~~d 107 (162)
..|+++|.+|||||||+|+|++... .. ..+|.......+...+ .++.++||||..... .....++.++|
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 3689999999999999999997652 11 1223334444555554 569999999965421 11234678899
Q ss_pred EEEEEEECC---ChhhHHHHHHHHHHHhhCC-CCCCCcEEEEEeCCCCCCC
Q psy689 108 ILIYVIDSA---DVKRFEESGFELHELLSDE-KLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 108 ~vl~v~d~~---~~~~~~~~~~~~~~~~~~~-~~~~~~iivv~nK~Dl~~~ 154 (162)
++++|+|++ +.+.+.....|..++.... .+.+.|+++|+||+|+...
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~ 290 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE 290 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh
Confidence 999999988 4455566666666655432 1346899999999999754
No 193
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.69 E-value=4e-16 Score=105.70 Aligned_cols=110 Identities=25% Similarity=0.335 Sum_probs=76.6
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCccCCcce----eEEEEEEeC-CeEEEEEeCCCCCCChh-------hHHhhcccCCEEE
Q psy689 43 LLGLDNAGKTTILKTLASEDISHITPTQG----FNIKSVQSE-GFKLNVWDIGGQRKIRP-------YWRNYFDNTDILI 110 (162)
Q Consensus 43 viG~~~sGKStli~~l~~~~~~~~~~~~~----~~~~~~~~~-~~~~~l~D~~G~~~~~~-------~~~~~~~~~d~vl 110 (162)
++|++|||||||++++.+..........+ ......... ...+.+||+||...... ....+++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 57999999999999998876332222222 222233333 67899999999776543 3345778999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
+++|+++........ +...... .+.|+++|+||+|+......
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~ 122 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEE 122 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhH
Confidence 999999876655544 2233222 47899999999999876543
No 194
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=7.4e-16 Score=121.60 Aligned_cols=113 Identities=21% Similarity=0.355 Sum_probs=81.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEE----EEEEeCCeEEEEEeCCCCCCChhh-----------HH
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNI----KSVQSEGFKLNVWDIGGQRKIRPY-----------WR 100 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~D~~G~~~~~~~-----------~~ 100 (162)
...++|+++|.+|+|||||++++++......++..+.+. ..+...+..+.+|||||..+.... ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 357999999999999999999999877433344444332 234457788999999996543221 12
Q ss_pred hhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 101 NYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 101 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
.+++.+|++++|+|++++.+.+... .+..+.. .+.|+++|+||+|+.+
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLVD 298 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCCC
Confidence 4678899999999999876655432 2333332 3679999999999974
No 195
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.69 E-value=4.2e-16 Score=128.31 Aligned_cols=115 Identities=24% Similarity=0.277 Sum_probs=82.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCc-----cCCcceeEEEEEEe--CCeEEEEEeCCCCCCChhhHHhhcccCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISH-----ITPTQGFNIKSVQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTD 107 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d 107 (162)
.++..+|+++|..++|||||+++|.+..... .....+.....+.. .+..+.+|||||+..|...+..+++.+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 4567899999999999999999998765322 11222222222222 3589999999999999999988999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 108 ILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 108 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++++|+|+++....+.. ..+..+. ..++|+++|+||+|+.+.
T Consensus 321 iaILVVDA~dGv~~QT~-E~I~~~k----~~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 321 IAILIIAADDGVKPQTI-EAINYIQ----AANVPIIVAINKIDKANA 362 (742)
T ss_pred EEEEEEECcCCCChhhH-HHHHHHH----hcCceEEEEEECCCcccc
Confidence 99999999874322221 1122221 147899999999999764
No 196
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.69 E-value=5e-16 Score=112.17 Aligned_cols=108 Identities=21% Similarity=0.213 Sum_probs=76.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--Ccc-------------CCcceeE----EEEEEeC----------CeEEEEEeCC
Q psy689 40 RILLLGLDNAGKTTILKTLASEDI--SHI-------------TPTQGFN----IKSVQSE----------GFKLNVWDIG 90 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~--~~~-------------~~~~~~~----~~~~~~~----------~~~~~l~D~~ 90 (162)
+|+++|..++|||||+.+|+...- ... ....|.+ ...+.+. +..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999875420 000 0001111 1122222 6889999999
Q ss_pred CCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 91 GQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 91 G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
|+.+|......+++.+|++++|+|+.+....+.. ..+..... .++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCcc
Confidence 9999999999999999999999999876544432 22333332 267999999999986
No 197
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=5.6e-16 Score=115.12 Aligned_cols=110 Identities=21% Similarity=0.273 Sum_probs=80.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--CC---cc----------------CCcceeEEEEEEeCCeEEEEEeCCCCCCChhh
Q psy689 40 RILLLGLDNAGKTTILKTLASED--IS---HI----------------TPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPY 98 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~--~~---~~----------------~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 98 (162)
+|+++|++|||||||++++++.. .. .. ..+.......+.+.+..+.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999987532 10 00 11222334456678899999999999888877
Q ss_pred HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 99 WRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 99 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+...++.+|++++|+|+++........ .+..... .++|+++|+||+|+.+.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~~~~~~----~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEK-LWEFADE----AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECCccCCC
Confidence 888899999999999998765443322 2233222 36899999999999865
No 198
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.69 E-value=2e-16 Score=122.01 Aligned_cols=112 Identities=21% Similarity=0.335 Sum_probs=85.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeE----EEEEEeCCeEEEEEeCCCCCCCh---------hhHHhhccc
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFN----IKSVQSEGFKLNVWDIGGQRKIR---------PYWRNYFDN 105 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~~~~~ 105 (162)
..|+++|.|+||||||+|+|.+....-.+.++|.+ +....+.+..+.++||+|.+... ......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999976666666655 45677888899999999977433 123456788
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 106 TDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 106 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
||++|+|+|....-+ .....+..+++. .++|+++|.||+|....+
T Consensus 84 ADvilfvVD~~~Git--~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~e 128 (444)
T COG1160 84 ADVILFVVDGREGIT--PADEEIAKILRR---SKKPVILVVNKIDNLKAE 128 (444)
T ss_pred CCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEEcccCchhh
Confidence 999999999875333 444444454542 478999999999998443
No 199
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.69 E-value=3.9e-16 Score=122.88 Aligned_cols=117 Identities=19% Similarity=0.179 Sum_probs=80.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCC----------------------------------ccCCcceeEEEEEEeC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDIS----------------------------------HITPTQGFNIKSVQSE 80 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~----------------------------------~~~~~~~~~~~~~~~~ 80 (162)
..+.++|+++|++++|||||+++|++..-. ....|.......+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 456799999999999999999999843200 0112233344556677
Q ss_pred CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 81 GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 81 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
+..+.+|||||+.++.......+..+|++++|+|++++..+.....+...+.... ...|+++|+||+|+.+
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVN 153 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEcccccc
Confidence 8999999999998887655566788999999999986212222222222222221 2347999999999975
No 200
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.69 E-value=5.6e-16 Score=128.63 Aligned_cols=113 Identities=18% Similarity=0.277 Sum_probs=80.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCccCCc----ceeEEEEEEeCCeEEEEEeCCCCCCC----------hhh-HHh
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDISHITPT----QGFNIKSVQSEGFKLNVWDIGGQRKI----------RPY-WRN 101 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~-~~~ 101 (162)
...+|+++|.+|||||||+|++++......++. .......+..++..+.+|||||..+. ... ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 458999999999999999999998874322222 22223345567778899999996421 111 123
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 102 YFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 102 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+++.+|++++|+|+++..+.+... ++..+.. .+.|+++|+||+|+.+.
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDE 576 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCCh
Confidence 468899999999999877766653 3344433 36899999999999764
No 201
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.69 E-value=7.1e-16 Score=125.17 Aligned_cols=111 Identities=21% Similarity=0.268 Sum_probs=84.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--CCcc-------------C----CcceeEEEEEEeCCeEEEEEeCCCCCCChhhHH
Q psy689 40 RILLLGLDNAGKTTILKTLASED--ISHI-------------T----PTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWR 100 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~--~~~~-------------~----~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~ 100 (162)
+|+++|+.++|||||+++|++.. +... . .|.......+.+.+..+.+|||||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 79999999999999999998632 1110 1 122223345778889999999999999998888
Q ss_pred hhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 101 NYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 101 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
.+++.+|++++|+|+++.. +.....++..+.. .++|++||+||+|+.+.+
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~ 132 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSAR 132 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcC
Confidence 9999999999999997632 3344556666554 368999999999997654
No 202
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.69 E-value=8.2e-16 Score=114.15 Aligned_cols=111 Identities=19% Similarity=0.148 Sum_probs=80.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--CC---cc----------------CCcceeEEEEEEeCCeEEEEEeCCCCCCChhh
Q psy689 40 RILLLGLDNAGKTTILKTLASED--IS---HI----------------TPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPY 98 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~--~~---~~----------------~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 98 (162)
+|+++|++++|||||+++|++.. .. .. ..+.......+.+.+.++.+|||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 48899999999999999996421 10 00 11222234456778899999999999999888
Q ss_pred HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 99 WRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 99 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+...++.+|++++|+|+.+...- .....+..... .++|+++++||+|+.+..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~~~----~~~p~ivviNK~D~~~a~ 132 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEP-QTETVWRQADR----YNVPRIAFVNKMDRTGAD 132 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHHHH----cCCCEEEEEECCCCCCCC
Confidence 88899999999999999764322 22233333332 368999999999998643
No 203
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.68 E-value=5.5e-16 Score=125.47 Aligned_cols=109 Identities=22% Similarity=0.228 Sum_probs=78.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCc-----cCCcceeEEEEEEe----------------CCeEEEEEeCCCCCCC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDISH-----ITPTQGFNIKSVQS----------------EGFKLNVWDIGGQRKI 95 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~~~-----~~~~~~~~~~~~~~----------------~~~~~~l~D~~G~~~~ 95 (162)
+...|+++|++++|||||++++.+..... +.++.|........ ....+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 44579999999999999999998876322 22333333222111 0123889999999999
Q ss_pred hhhHHhhcccCCEEEEEEECCC---hhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 96 RPYWRNYFDNTDILIYVIDSAD---VKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 96 ~~~~~~~~~~~d~vl~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
..++..+++.+|++++|+|+++ +.+++.+. . ... .++|+++++||+|+..
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~-l~~---~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN----I-LRM---YKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----H-HHH---cCCCEEEEEECCCccc
Confidence 9998889999999999999986 34433322 1 111 3789999999999975
No 204
>COG1159 Era GTPase [General function prediction only]
Probab=99.68 E-value=2.6e-16 Score=115.55 Aligned_cols=115 Identities=23% Similarity=0.327 Sum_probs=83.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeE----EEEEEeCCeEEEEEeCCCCCCChhh--------HHhhcc
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFN----IKSVQSEGFKLNVWDIGGQRKIRPY--------WRNYFD 104 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~~~ 104 (162)
+.--|+++|.|+||||||+|++.+....-+++-+..+ ...++.++.++.+.||||...-... ....+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 3456899999999999999999999966655544433 3345567899999999995544332 244578
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 105 NTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 105 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++|++++|+|++..-. ....+..+.++. .+.|+++++||.|......
T Consensus 85 dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~~~~~ 131 (298)
T COG1159 85 DVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKVKPKT 131 (298)
T ss_pred cCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccCCcHH
Confidence 8999999999986322 333444444433 4689999999999877654
No 205
>PTZ00099 rab6; Provisional
Probab=99.68 E-value=4.9e-16 Score=108.67 Aligned_cols=91 Identities=22% Similarity=0.395 Sum_probs=75.1
Q ss_pred CccCCcceeEEE--EEEe--CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCC
Q psy689 64 SHITPTQGFNIK--SVQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTG 139 (162)
Q Consensus 64 ~~~~~~~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (162)
..+.||.|..+. .+.. ....+.+|||+|++++...+..+++.+|++|+|||++++++|+.+..|+..+..... ++
T Consensus 7 ~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~-~~ 85 (176)
T PTZ00099 7 NNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KD 85 (176)
T ss_pred CCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CC
Confidence 456778875553 2333 348899999999999999999999999999999999999999999999888876542 57
Q ss_pred CcEEEEEeCCCCCCCC
Q psy689 140 VPLLVYANKQDLLGAA 155 (162)
Q Consensus 140 ~~iivv~nK~Dl~~~~ 155 (162)
+|+++|+||+|+.+.+
T Consensus 86 ~piilVgNK~DL~~~~ 101 (176)
T PTZ00099 86 VIIALVGNKTDLGDLR 101 (176)
T ss_pred CeEEEEEECccccccc
Confidence 8999999999997543
No 206
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.67 E-value=4.5e-16 Score=107.05 Aligned_cols=100 Identities=26% Similarity=0.313 Sum_probs=67.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhH----HhhcccCCEEEEEEEC
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYW----RNYFDNTDILIYVIDS 115 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~----~~~~~~~d~vl~v~d~ 115 (162)
+|+++|++|+|||||++++.+... ...++.+ +.+... .+|||||.......+ ...++.+|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~~~~~~~-----v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-LARKTQA-----VEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-cCccceE-----EEECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 799999999999999999876542 1112222 222222 379999974333222 2346889999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 116 ADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++.+++. ..|+..+. .+.|+++++||+|+.+.
T Consensus 75 ~~~~s~~--~~~~~~~~-----~~~~ii~v~nK~Dl~~~ 106 (158)
T PRK15467 75 NDPESRL--PAGLLDIG-----VSKRQIAVISKTDMPDA 106 (158)
T ss_pred CCccccc--CHHHHhcc-----CCCCeEEEEEccccCcc
Confidence 9876542 23433321 36799999999998653
No 207
>KOG0096|consensus
Probab=99.67 E-value=3.2e-16 Score=107.73 Aligned_cols=118 Identities=20% Similarity=0.364 Sum_probs=102.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCcceeEEEEEEe---C-CeEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDIS-HITPTQGFNIKSVQS---E-GFKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~---~-~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
...++++++|+.|.||||++++.+.+++. .+.++.|........ . ..++..|||.|++.+......++-+..+.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 35789999999999999999998888754 478888876554333 2 389999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
++||++.+-+..+...|.....+... ++||+++|||.|.....
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~--NiPiv~cGNKvDi~~r~ 130 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRE--NIPIVLCGNKVDIKARK 130 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhc--CCCeeeeccceeccccc
Confidence 99999999999999999999888764 69999999999998766
No 208
>PRK10218 GTP-binding protein; Provisional
Probab=99.67 E-value=1.1e-15 Score=124.04 Aligned_cols=116 Identities=21% Similarity=0.324 Sum_probs=86.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC--CCc-------------cCCcceeE----EEEEEeCCeEEEEEeCCCCCCChh
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED--ISH-------------ITPTQGFN----IKSVQSEGFKLNVWDIGGQRKIRP 97 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~--~~~-------------~~~~~~~~----~~~~~~~~~~~~l~D~~G~~~~~~ 97 (162)
+..+|+++|+.++|||||+++|+... +.. ...+.+.+ ...+.+++..+++|||||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 45689999999999999999998632 111 11233333 234566789999999999999999
Q ss_pred hHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 98 YWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 98 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
.+..+++.+|++++|+|+++.... ....++..... .++|+++|+||+|+.+.+..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~ 138 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPD 138 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchh
Confidence 999999999999999999864322 23344444443 37799999999999876543
No 209
>KOG1673|consensus
Probab=99.67 E-value=9.8e-17 Score=107.04 Aligned_cols=123 Identities=23% Similarity=0.363 Sum_probs=99.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDI 108 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 108 (162)
.....+||.++|++..|||||+-.+.++.. ..+..+.|.+. +++..+ +..+.+||++|++++....+-.+.++-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 345579999999999999999999988875 44556667554 344444 4778899999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy689 109 LIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAG 158 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~ 158 (162)
++++||.+++++++.+..|+.+...... .-+| ++||+|.|..-..+++
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~Nk-tAiP-ilvGTKyD~fi~lp~e 143 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNK-TAIP-ILVGTKYDLFIDLPPE 143 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCC-ccce-EEeccchHhhhcCCHH
Confidence 9999999999999999999999876543 2344 5679999987666554
No 210
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.66 E-value=1e-15 Score=108.93 Aligned_cols=110 Identities=19% Similarity=0.264 Sum_probs=68.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCc-cCCccee---EEE--EEEeC-CeEEEEEeCCCCCCChhhHHh-----hccc
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDISH-ITPTQGF---NIK--SVQSE-GFKLNVWDIGGQRKIRPYWRN-----YFDN 105 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~~-~~~~~~~---~~~--~~~~~-~~~~~l~D~~G~~~~~~~~~~-----~~~~ 105 (162)
+++|+++|++|+|||||+|.+++..... ..++.+. +.. .+... ...+.+||+||.......... .+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 4789999999999999999999865221 2222221 111 11111 247899999997654322222 2567
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 106 TDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 106 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+|+++++.+. .+.....++...++. .+.|+++|+||+|+...
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~ 122 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLS 122 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhh
Confidence 8988887542 234444444333333 25799999999999543
No 211
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.66 E-value=4.7e-16 Score=122.43 Aligned_cols=117 Identities=17% Similarity=0.145 Sum_probs=80.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC--CC--------------------------------ccCCcceeEEEEEEeC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED--IS--------------------------------HITPTQGFNIKSVQSE 80 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~--~~--------------------------------~~~~~~~~~~~~~~~~ 80 (162)
..+.++|+++|+.++|||||+++|+... .. ....|.......+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 4567899999999999999999997521 11 0011222334456667
Q ss_pred CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHH-HHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 81 GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESG-FELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 81 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
+..+.+||+||+.+|.......+..+|++++|+|+++.++..... .+...+.... ...|++||+||+|+.+
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVN 155 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccC
Confidence 899999999999888766666678899999999998864321111 1111122221 2357999999999975
No 212
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.66 E-value=8.6e-16 Score=109.75 Aligned_cols=113 Identities=17% Similarity=0.097 Sum_probs=71.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC--CccCC----cceeEEEEEEeC---------------------------C----
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI--SHITP----TQGFNIKSVQSE---------------------------G---- 81 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~--~~~~~----~~~~~~~~~~~~---------------------------~---- 81 (162)
++|+++|+.|+|||||+..+.+... ..... +.........+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4789999999999999999975521 00000 001111111110 2
Q ss_pred --eEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 82 --FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 82 --~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
..+.+|||||+.++.......+..+|++++|+|++++.........+..+... ...|+++|+||+|+.+.
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~ 152 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKE 152 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCH
Confidence 67899999999888777777778899999999998631111111111111111 23579999999999753
No 213
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.66 E-value=1.7e-15 Score=122.98 Aligned_cols=109 Identities=22% Similarity=0.261 Sum_probs=80.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCc----cC--CcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDISH----IT--PTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~~----~~--~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
+.|+++|+.++|||||+++|.+..... .. .|....+..+...+..+.+||+||+++|.......+..+|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 468999999999999999998744211 11 223334445666778999999999999988878888999999999
Q ss_pred EECCC---hhhHHHHHHHHHHHhhCCCCCCCc-EEEEEeCCCCCCCC
Q psy689 113 IDSAD---VKRFEESGFELHELLSDEKLTGVP-LLVYANKQDLLGAA 155 (162)
Q Consensus 113 ~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~~ 155 (162)
+|+++ +.+.+.+. +... .++| ++||+||+|+.+..
T Consensus 81 VDa~~G~~~qT~ehl~-----il~~---lgi~~iIVVlNK~Dlv~~~ 119 (581)
T TIGR00475 81 VDADEGVMTQTGEHLA-----VLDL---LGIPHTIVVITKADRVNEE 119 (581)
T ss_pred EECCCCCcHHHHHHHH-----HHHH---cCCCeEEEEEECCCCCCHH
Confidence 99987 33333221 1221 2567 99999999997643
No 214
>PRK13351 elongation factor G; Reviewed
Probab=99.66 E-value=1.5e-15 Score=125.80 Aligned_cols=115 Identities=21% Similarity=0.183 Sum_probs=87.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC--C------------C-------ccCCcceeEEEEEEeCCeEEEEEeCCCCCC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED--I------------S-------HITPTQGFNIKSVQSEGFKLNVWDIGGQRK 94 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~--~------------~-------~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 94 (162)
.+..+|+++|+.++|||||+++|+... . . ....|.......+.+.+..+.+|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 356799999999999999999997531 0 0 122234444556778889999999999999
Q ss_pred ChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 95 IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 95 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+...+..+++.+|++++|+|+++....+....| ..... .++|+++|+||+|+.+.+
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~----~~~p~iiviNK~D~~~~~ 141 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR----YGIPRLIFINKMDRVGAD 141 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh----cCCCEEEEEECCCCCCCC
Confidence 988888999999999999999887665544333 33322 368999999999998753
No 215
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.66 E-value=1.5e-15 Score=123.59 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=81.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC--CC------cc------CCcceeEE----EEEEe-----CCeEEEEEeCCCCC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED--IS------HI------TPTQGFNI----KSVQS-----EGFKLNVWDIGGQR 93 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~--~~------~~------~~~~~~~~----~~~~~-----~~~~~~l~D~~G~~ 93 (162)
+..+++++|+.++|||||+.+|+... .. .+ ....|.+. ..+.+ +++.+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 45589999999999999999997532 10 00 11222221 12222 35889999999999
Q ss_pred CChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 94 ~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
++...+..+++.+|++++|+|+++....+....|... .. .++|+++|+||+|+.+..
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~-~~----~~lpiIvViNKiDl~~a~ 142 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLA-LE----NDLEIIPVLNKIDLPAAD 142 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH----CCCCEEEEEECCCCCccc
Confidence 9999999999999999999999886555544444332 22 367999999999997543
No 216
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.66 E-value=6.2e-15 Score=107.41 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=60.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--c-cCCcceeEEEEEEeCCeEEEEEeCCCCCCCh-------hhHHhhcccCCEE
Q psy689 40 RILLLGLDNAGKTTILKTLASEDIS--H-ITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR-------PYWRNYFDNTDIL 109 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~--~-~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d~v 109 (162)
+++++|++|+|||||+++|.+.... . ..+|.......+...+..+++||+||..... .....+++.+|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 7899999999999999999987621 1 1223334455667788999999999975432 2234578899999
Q ss_pred EEEEECCChh
Q psy689 110 IYVIDSADVK 119 (162)
Q Consensus 110 l~v~d~~~~~ 119 (162)
++|+|++++.
T Consensus 82 l~V~D~t~~~ 91 (233)
T cd01896 82 LMVLDATKPE 91 (233)
T ss_pred EEEecCCcch
Confidence 9999998755
No 217
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.65 E-value=1.5e-15 Score=123.18 Aligned_cols=110 Identities=23% Similarity=0.289 Sum_probs=77.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCccC-----CcceeEEEEEEeC----C-------e-----EEEEEeCCCCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHIT-----PTQGFNIKSVQSE----G-------F-----KLNVWDIGGQR 93 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~-----~~~~~~~~~~~~~----~-------~-----~~~l~D~~G~~ 93 (162)
..++..|+++|++++|||||++++.+....... ++.|.+....... + . .+.+|||||+.
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 356678999999999999999999876532222 2333322221110 0 1 26899999999
Q ss_pred CChhhHHhhcccCCEEEEEEECCC---hhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 94 KIRPYWRNYFDNTDILIYVIDSAD---VKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 94 ~~~~~~~~~~~~~d~vl~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
.|...+...+..+|++++|+|+++ +.++..+.. + .. .++|+++++||+|+.
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~-~~---~~vpiIvviNK~D~~ 136 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----L-KR---RKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----H-HH---cCCCEEEEEECcCCc
Confidence 999888888899999999999987 444433321 1 11 378999999999986
No 218
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.65 E-value=3.3e-15 Score=114.28 Aligned_cols=88 Identities=24% Similarity=0.482 Sum_probs=75.2
Q ss_pred CCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCCh----------hhHHHHHHHHHHHhhCCC
Q psy689 67 TPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADV----------KRFEESGFELHELLSDEK 136 (162)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 136 (162)
.||.|+....+...+..+.+||++|+...+..|..++.+++++++|+|.++. ..+......+..+.+...
T Consensus 169 ~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~ 248 (342)
T smart00275 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred CCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence 3566667777777888999999999999999999999999999999999863 467777778888888777
Q ss_pred CCCCcEEEEEeCCCCCCC
Q psy689 137 LTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 137 ~~~~~iivv~nK~Dl~~~ 154 (162)
..++|++|++||.|+...
T Consensus 249 ~~~~piil~~NK~D~~~~ 266 (342)
T smart00275 249 FANTSIILFLNKIDLFEE 266 (342)
T ss_pred ccCCcEEEEEecHHhHHH
Confidence 789999999999998753
No 219
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.64 E-value=4.3e-15 Score=123.59 Aligned_cols=110 Identities=25% Similarity=0.433 Sum_probs=79.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEE----EEEeCCeEEEEEeCCCCCCChhh----------HHhhc
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIK----SVQSEGFKLNVWDIGGQRKIRPY----------WRNYF 103 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~D~~G~~~~~~~----------~~~~~ 103 (162)
..+|+++|.+|||||||+|++.+... .....+|.+.. .+..++.++++|||||..++... ...++
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 57899999999999999999988753 34445554433 45567789999999998776431 12232
Q ss_pred --ccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 104 --DNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 104 --~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+.+|++++|+|.++.+. ...++.+..+ .++|+++|+||+|+.+.+
T Consensus 82 ~~~~aD~vI~VvDat~ler---~l~l~~ql~e----~giPvIvVlNK~Dl~~~~ 128 (772)
T PRK09554 82 LSGDADLLINVVDASNLER---NLYLTLQLLE----LGIPCIVALNMLDIAEKQ 128 (772)
T ss_pred hccCCCEEEEEecCCcchh---hHHHHHHHHH----cCCCEEEEEEchhhhhcc
Confidence 47899999999987543 2334444433 378999999999987543
No 220
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.64 E-value=2.9e-15 Score=120.17 Aligned_cols=117 Identities=19% Similarity=0.210 Sum_probs=84.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC--C---Ccc----------C------C----cceeEEEEEEeCCeEEEEEeC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED--I---SHI----------T------P----TQGFNIKSVQSEGFKLNVWDI 89 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~--~---~~~----------~------~----~~~~~~~~~~~~~~~~~l~D~ 89 (162)
..+..+|+++|+.++|||||.++|+... . +.. . . +.......+.+++..+++|||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 3567799999999999999999996421 1 000 0 0 111223356778899999999
Q ss_pred CCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 90 GGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 90 ~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
||+.+|......+++.+|++++|+|+++.... ....++..... .++|+++++||+|+.+...
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~----~~iPiiv~iNK~D~~~a~~ 148 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL----RDTPIFTFINKLDRDGREP 148 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh----cCCCEEEEEECCcccccCH
Confidence 99999988777889999999999999864322 22333433322 4789999999999987553
No 221
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.64 E-value=4.6e-15 Score=112.56 Aligned_cols=88 Identities=23% Similarity=0.482 Sum_probs=75.5
Q ss_pred CCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCCh----------hhHHHHHHHHHHHhhCCC
Q psy689 67 TPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADV----------KRFEESGFELHELLSDEK 136 (162)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 136 (162)
.||.|+....+..++..+.+||++|+...+..|..++.+++++++|+|.++. ..+......+..+.+...
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 3566677777778889999999999999999999999999999999999874 567777777888888777
Q ss_pred CCCCcEEEEEeCCCCCCC
Q psy689 137 LTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 137 ~~~~~iivv~nK~Dl~~~ 154 (162)
..++|+++++||.|+...
T Consensus 226 ~~~~pill~~NK~D~f~~ 243 (317)
T cd00066 226 FANTSIILFLNKKDLFEE 243 (317)
T ss_pred ccCCCEEEEccChHHHHH
Confidence 789999999999997654
No 222
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.63 E-value=5e-15 Score=118.86 Aligned_cols=118 Identities=18% Similarity=0.187 Sum_probs=82.9
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCC--CC---cc----------------CCcce----eEEEEEEeCCeEEEEE
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASED--IS---HI----------------TPTQG----FNIKSVQSEGFKLNVW 87 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~--~~---~~----------------~~~~~----~~~~~~~~~~~~~~l~ 87 (162)
....+..+++++|.+++|||||+++|+... .. .. ....+ .....+.+++..+.+|
T Consensus 6 ~~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inli 85 (527)
T TIGR00503 6 KEVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLL 85 (527)
T ss_pred hhhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEE
Confidence 344667899999999999999999985321 10 00 00112 2234566788999999
Q ss_pred eCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 88 DIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 88 D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
||||+.+|.......++.+|++++|+|+++... .....++... .. .++|+++++||+|+....
T Consensus 86 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~-~~---~~~PiivviNKiD~~~~~ 148 (527)
T TIGR00503 86 DTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVT-RL---RDTPIFTFMNKLDRDIRD 148 (527)
T ss_pred ECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHH-Hh---cCCCEEEEEECccccCCC
Confidence 999999888777778899999999999986422 1223333322 22 378999999999987543
No 223
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.63 E-value=4.5e-14 Score=103.61 Aligned_cols=134 Identities=18% Similarity=0.199 Sum_probs=86.5
Q ss_pred hHHHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccC----CcceeEEEEEEeCCeEEEEEeCCCCCCCh--
Q psy689 23 GLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHIT----PTQGFNIKSVQSEGFKLNVWDIGGQRKIR-- 96 (162)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-- 96 (162)
.++++..........+++|+++|.+|||||||+|++++......+ .|...........+..+.+|||||..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~ 95 (249)
T cd01853 16 KALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMD 95 (249)
T ss_pred HHHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhh
Confidence 445556666778888999999999999999999999998743222 23333334455677899999999976652
Q ss_pred h-h-------HHhhcc--cCCEEEEEEECCChh-hHH--HHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy689 97 P-Y-------WRNYFD--NTDILIYVIDSADVK-RFE--ESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAG 158 (162)
Q Consensus 97 ~-~-------~~~~~~--~~d~vl~v~d~~~~~-~~~--~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~ 158 (162)
. . ...++. ..|++++|..++... ... .+...+.+..... --.++++|.||+|...+....
T Consensus 96 ~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~~p~~~~ 168 (249)
T cd01853 96 QRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASSPPDGLN 168 (249)
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccCCCCCCC
Confidence 1 1 122332 568888887665421 222 1222333322211 124799999999998766654
No 224
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.63 E-value=2.3e-14 Score=107.16 Aligned_cols=134 Identities=20% Similarity=0.243 Sum_probs=86.4
Q ss_pred HhHHHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCc----ceeEEEEEEeCCeEEEEEeCCCCCCChh
Q psy689 22 LGLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPT----QGFNIKSVQSEGFKLNVWDIGGQRKIRP 97 (162)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 97 (162)
..++.++.+++....+.++|+++|.+|+||||++|++++......+.. ..........++.++.+|||||..+...
T Consensus 22 ~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~ 101 (313)
T TIGR00991 22 TKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGY 101 (313)
T ss_pred HHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHH
Confidence 356777888888888999999999999999999999998874322221 1222233445778999999999776532
Q ss_pred hHH---hhcc------cCCEEEEEEECCCh--hhH-HHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 98 YWR---NYFD------NTDILIYVIDSADV--KRF-EESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 98 ~~~---~~~~------~~d~vl~v~d~~~~--~~~-~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
... ..++ ..|++|+|.+++.. ... ..+...+....... --.+.||++|++|...++..
T Consensus 102 ~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~pd~~ 171 (313)
T TIGR00991 102 INDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSPPDGL 171 (313)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCCCCCC
Confidence 211 1122 58999999665432 211 11222222222111 12579999999998765543
No 225
>KOG1707|consensus
Probab=99.62 E-value=4.7e-15 Score=116.84 Aligned_cols=124 Identities=19% Similarity=0.271 Sum_probs=94.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcce--eE-EEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQG--FN-IKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~--~~-~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
+....++|+++|+.|+|||||+-.+...++...-|..- ++ ...++.+.....+.|++...+-+......++++|+++
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 45668999999999999999999999888543333211 11 1234445577899999877777777788899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCC--CCCCcEEEEEeCCCCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEK--LTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~~ 157 (162)
++|+++++++.+.+...|...++... .-++|||+||||+|.......
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 99999999999998775444444332 247999999999999887765
No 226
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=2.7e-15 Score=109.11 Aligned_cols=132 Identities=19% Similarity=0.365 Sum_probs=93.2
Q ss_pred HHhHHHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCc-ceeE---EEEEEeCCeEEEEEeCCCCCC--
Q psy689 21 ALGLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPT-QGFN---IKSVQSEGFKLNVWDIGGQRK-- 94 (162)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~-~~~~---~~~~~~~~~~~~l~D~~G~~~-- 94 (162)
++....+.+........+++++++|.+|+||||++|+|+.+.....+.. .+.. ......+...+.+||+||..+
T Consensus 22 se~~l~~~~~~~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~ 101 (296)
T COG3596 22 SERILEQLRMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGK 101 (296)
T ss_pred HHHHHHHhhhhhhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccch
Confidence 4555555655566677899999999999999999999997663333211 1111 112233447899999999655
Q ss_pred -----ChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 95 -----IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 95 -----~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+++....+++..|.++++++..++..-... ..+.+++.... +.+++++.|.+|...+.
T Consensus 102 ~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~~--~~~~i~~VtQ~D~a~p~ 164 (296)
T COG3596 102 DKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDE-DFLRDVIILGL--DKRVLFVVTQADRAEPG 164 (296)
T ss_pred hhhHHHHHHHHHHhhhccEEEEeccCCCccccCCH-HHHHHHHHhcc--CceeEEEEehhhhhccc
Confidence 666677888999999999999987543333 34455544332 47999999999988764
No 227
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.62 E-value=4.6e-15 Score=107.17 Aligned_cols=111 Identities=18% Similarity=0.186 Sum_probs=74.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--CC---------------c-----------------cCCcceeEEEEEEeCCeEEE
Q psy689 40 RILLLGLDNAGKTTILKTLASED--IS---------------H-----------------ITPTQGFNIKSVQSEGFKLN 85 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~--~~---------------~-----------------~~~~~~~~~~~~~~~~~~~~ 85 (162)
+|+++|+.++|||||+.+|+... .. . ...|.......+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 48999999999999999986321 00 0 00112223345667889999
Q ss_pred EEeCCCCCCChhhHHhhcccCCEEEEEEECCChhh------HHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 86 VWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKR------FEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 86 l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
+|||||+.++...+...+..+|++++|+|+++... .......+...... ...|+++|+||+|+..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL---GVKQLIVAVNKMDDVT 151 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence 99999998887766777788999999999987421 11122222222111 2368999999999984
No 228
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.61 E-value=2.1e-14 Score=118.96 Aligned_cols=115 Identities=20% Similarity=0.160 Sum_probs=84.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC--C---Ccc----------------CCcceeEEEEEEeCCeEEEEEeCCCCCC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED--I---SHI----------------TPTQGFNIKSVQSEGFKLNVWDIGGQRK 94 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~--~---~~~----------------~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 94 (162)
.+..+|+++|..++|||||+++|++.. . ... ..|.......+.+.+..+.+|||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 445699999999999999999997422 1 001 1122233446777889999999999999
Q ss_pred ChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 95 IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 95 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+.......++.+|++++|+|+++....+.. ..+..+.. .++|+++|+||+|+.+..
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR----YEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH----cCCCEEEEEECCCCCCCC
Confidence 888888899999999999999875443332 33333332 368999999999998643
No 229
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.61 E-value=1.5e-14 Score=102.73 Aligned_cols=111 Identities=18% Similarity=0.144 Sum_probs=76.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC--C--------C---------ccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhh
Q psy689 38 ELRILLLGLDNAGKTTILKTLASED--I--------S---------HITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPY 98 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~--~--------~---------~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 98 (162)
.++|+++|..++|||||+++|++.. . . ....|.......+..++..+.+.||||+.++...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 5789999999999999999997641 0 0 0011122222344556788999999999888777
Q ss_pred HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCc-EEEEEeCCCCCC
Q psy689 99 WRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVP-LLVYANKQDLLG 153 (162)
Q Consensus 99 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~ 153 (162)
....+..+|++++|+|++..-. ......+..+.. .++| +++|.||+|+..
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~----~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ----VGVPYIVVFLNKADMVD 132 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCcEEEEEeCCCCCC
Confidence 7778889999999999976422 122223333322 2455 789999999963
No 230
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.60 E-value=2.6e-14 Score=110.39 Aligned_cols=136 Identities=18% Similarity=0.291 Sum_probs=94.3
Q ss_pred HHHHHHHHHhHHHHH-HhhcCCC---CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEE----EEEeCCeEEE
Q psy689 14 ENQVKDLALGLLAIL-KKLRSSP---EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIK----SVQSEGFKLN 85 (162)
Q Consensus 14 ~~~~~~~~~~~~~~~-~~~~~~~---~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 85 (162)
...+.++...+...+ ....... ...++++++|.|++|||||+|++++.+..-.++..|.+.. .+++++.++.
T Consensus 150 g~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~ 229 (444)
T COG1160 150 GRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYV 229 (444)
T ss_pred ccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEE
Confidence 334455555555544 2122122 2579999999999999999999999996666666665543 4566789999
Q ss_pred EEeCCCCCCChhh-----------HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 86 VWDIGGQRKIRPY-----------WRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 86 l~D~~G~~~~~~~-----------~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++||+|..+-... ....+..+|++++|+|++.+-+-+.. .....+.. .+.+++||.||+|+.+.
T Consensus 230 liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~----~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 230 LIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL-RIAGLIEE----AGRGIVIVVNKWDLVEE 304 (444)
T ss_pred EEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH----cCCCeEEEEEccccCCc
Confidence 9999996553222 23456789999999999976543332 22223332 47899999999999886
No 231
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.59 E-value=3.2e-14 Score=105.99 Aligned_cols=111 Identities=22% Similarity=0.309 Sum_probs=70.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCc-----------cCCcceeEEE--EEEeCC--eEEEEEeCCCCCCChh---h
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDISH-----------ITPTQGFNIK--SVQSEG--FKLNVWDIGGQRKIRP---Y 98 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~~~-----------~~~~~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~---~ 98 (162)
-.++|+++|++|+|||||+|+|++..... ..++...... .+..++ .++.+|||||..+... .
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 46899999999999999999998887322 2333333322 233344 6799999999544311 0
Q ss_pred H----------------------H-hhcc--cCCEEEEEEECCChhhHHHH-HHHHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 99 W----------------------R-NYFD--NTDILIYVIDSADVKRFEES-GFELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 99 ~----------------------~-~~~~--~~d~vl~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
| + ..+. ++|+++++++.+... +... ...+..+. ..+|+++|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~-----~~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS-----KRVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh-----ccCCEEEEEECCCcC
Confidence 0 0 1222 468899999877522 2222 22233332 268999999999997
Q ss_pred C
Q psy689 153 G 153 (162)
Q Consensus 153 ~ 153 (162)
.
T Consensus 157 ~ 157 (276)
T cd01850 157 T 157 (276)
T ss_pred C
Confidence 5
No 232
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.58 E-value=1.6e-14 Score=117.50 Aligned_cols=103 Identities=20% Similarity=0.415 Sum_probs=72.5
Q ss_pred cCCCCCHHHHHHHHhcCCCCccCCcceeE----EEEEEeCCeEEEEEeCCCCCCChhh------HHhhc--ccCCEEEEE
Q psy689 45 GLDNAGKTTILKTLASEDISHITPTQGFN----IKSVQSEGFKLNVWDIGGQRKIRPY------WRNYF--DNTDILIYV 112 (162)
Q Consensus 45 G~~~sGKStli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~D~~G~~~~~~~------~~~~~--~~~d~vl~v 112 (162)
|.+|+|||||+|++.+... ...+.++.+ ...+..++.++++|||||+.++... .+.++ +.+|++++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence 8999999999999998763 233334433 2345667788999999998877543 23333 368999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+|.++.+ +...+..+..+ .+.|+++|+||+|+.+..
T Consensus 80 vDat~le---r~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~ 115 (591)
T TIGR00437 80 VDASNLE---RNLYLTLQLLE----LGIPMILALNLVDEAEKK 115 (591)
T ss_pred ecCCcch---hhHHHHHHHHh----cCCCEEEEEehhHHHHhC
Confidence 9998743 22333333332 378999999999996544
No 233
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.58 E-value=2.8e-14 Score=97.82 Aligned_cols=107 Identities=24% Similarity=0.298 Sum_probs=68.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEE--EEEeCCeEEEEEeCCCCCCC----------hhhHHhhcc--
Q psy689 40 RILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK--SVQSEGFKLNVWDIGGQRKI----------RPYWRNYFD-- 104 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~--~~~~~~~~~~l~D~~G~~~~----------~~~~~~~~~-- 104 (162)
.|+++|++|+|||||++.+.+.. ....+++.+.+.. .+... ..+.+||+||.... ......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 37899999999999999999543 3444455444332 22222 38899999996542 233333443
Q ss_pred -cCCEEEEEEECCChhhH--HHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 105 -NTDILIYVIDSADVKRF--EESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 105 -~~d~vl~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
..+++++++|.+...+. ..+..|+.. .+.|+++|+||+|+...
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------~~~~vi~v~nK~D~~~~ 125 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDLEMLDWLEE-------LGIPFLVVLTKADKLKK 125 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHHHHHHHHHH-------cCCCEEEEEEchhcCCh
Confidence 34788999998764321 122233322 25799999999999643
No 234
>KOG0090|consensus
Probab=99.57 E-value=6.8e-15 Score=103.14 Aligned_cols=121 Identities=26% Similarity=0.390 Sum_probs=95.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcc---cCCEEEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFD---NTDILIYVID 114 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~---~~d~vl~v~d 114 (162)
+-.|+++|+++||||+|+-+|..+....+.+....+..++...+...+++|.||+.+.+.....++. .+-++++|+|
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVD 117 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVD 117 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEe
Confidence 3578999999999999999999987766667777777788888888999999999999888777777 6889999999
Q ss_pred CC-ChhhHHHHHHHHHHHhhCC--CCCCCcEEEEEeCCCCCCCCCCC
Q psy689 115 SA-DVKRFEESGFELHELLSDE--KLTGVPLLVYANKQDLLGAAPAG 158 (162)
Q Consensus 115 ~~-~~~~~~~~~~~~~~~~~~~--~~~~~~iivv~nK~Dl~~~~~~~ 158 (162)
.. .......+...+..++... ...++|++|+.||.|+.-..+.+
T Consensus 118 Sa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~ 164 (238)
T KOG0090|consen 118 SATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAE 164 (238)
T ss_pred ccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHH
Confidence 53 3333445555555555544 24679999999999998776654
No 235
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.56 E-value=4.5e-14 Score=98.72 Aligned_cols=114 Identities=21% Similarity=0.359 Sum_probs=79.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEEE-EEeCCeEEEEEeCCC----------CCCChhhHHhhcc
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIKS-VQSEGFKLNVWDIGG----------QRKIRPYWRNYFD 104 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~~-~~~~~~~~~l~D~~G----------~~~~~~~~~~~~~ 104 (162)
...-|+++|.++||||||+|.|++.. ...++.|+|.+..- +..-+-.+.+.|.|| .+.+......|++
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~ 102 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLE 102 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999976 67888888866542 222223388999999 2333444455554
Q ss_pred c---CCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 105 N---TDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 105 ~---~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
. -.++++++|+..+-. .....+.+.+.. .++|++|++||+|.....
T Consensus 103 ~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~ 151 (200)
T COG0218 103 KRANLKGVVLLIDARHPPK--DLDREMIEFLLE---LGIPVIVVLTKADKLKKS 151 (200)
T ss_pred hchhheEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCeEEEEEccccCChh
Confidence 4 367888999875433 222233333333 489999999999998754
No 236
>PLN03126 Elongation factor Tu; Provisional
Probab=99.56 E-value=6.9e-14 Score=111.10 Aligned_cols=115 Identities=21% Similarity=0.203 Sum_probs=80.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCC------C---------CccCCcceeE----EEEEEeCCeEEEEEeCCCCCC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASED------I---------SHITPTQGFN----IKSVQSEGFKLNVWDIGGQRK 94 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~------~---------~~~~~~~~~~----~~~~~~~~~~~~l~D~~G~~~ 94 (162)
...+.++++++|..++|||||+++|++.. . .......|.+ ...+..++..+.++|+||+.+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 34667999999999999999999998521 0 0111122222 334555778999999999999
Q ss_pred ChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCc-EEEEEeCCCCCC
Q psy689 95 IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVP-LLVYANKQDLLG 153 (162)
Q Consensus 95 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~ 153 (162)
|.......+..+|++++|+|+.+... .....++..+.. .++| +++++||+|+.+
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVD 211 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEecccccC
Confidence 87777777788999999999886432 222333333332 2567 788999999975
No 237
>PRK12735 elongation factor Tu; Reviewed
Probab=99.56 E-value=4.8e-14 Score=110.07 Aligned_cols=116 Identities=17% Similarity=0.174 Sum_probs=77.5
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCC-------CC--------ccCCcceeE----EEEEEeCCeEEEEEeCCCCC
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASED-------IS--------HITPTQGFN----IKSVQSEGFKLNVWDIGGQR 93 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~-------~~--------~~~~~~~~~----~~~~~~~~~~~~l~D~~G~~ 93 (162)
....+.++++++|..++|||||+++|++.. .. ......|.+ ...+..++..+.++||||+.
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 345667999999999999999999998621 00 000112222 22344466789999999998
Q ss_pred CChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEE-EEEeCCCCCC
Q psy689 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLL-VYANKQDLLG 153 (162)
Q Consensus 94 ~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~Dl~~ 153 (162)
+|.......+..+|++++|+|+.+... ......+..+.. .++|.+ +++||+|+.+
T Consensus 87 ~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEecCCcc
Confidence 887666667788999999999976322 122223332222 256755 6899999974
No 238
>CHL00071 tufA elongation factor Tu
Probab=99.55 E-value=1.1e-13 Score=108.53 Aligned_cols=116 Identities=19% Similarity=0.193 Sum_probs=79.5
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCCC---------------CccCCcceeE----EEEEEeCCeEEEEEeCCCCC
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASEDI---------------SHITPTQGFN----IKSVQSEGFKLNVWDIGGQR 93 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~~---------------~~~~~~~~~~----~~~~~~~~~~~~l~D~~G~~ 93 (162)
....+.++++++|.+++|||||+++|++..- .......|.+ ...+..++.++.+.||||+.
T Consensus 7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence 3456679999999999999999999986420 0001112222 22344566789999999998
Q ss_pred CChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCc-EEEEEeCCCCCC
Q psy689 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVP-LLVYANKQDLLG 153 (162)
Q Consensus 94 ~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~ 153 (162)
++.......+..+|++++|+|+..... ......+..+.. .++| ++++.||+|+.+
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ----VGVPNIVVFLNKEDQVD 142 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEccCCCC
Confidence 887777777889999999999975322 122222222222 2567 778999999975
No 239
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.55 E-value=3e-14 Score=111.51 Aligned_cols=116 Identities=17% Similarity=0.109 Sum_probs=75.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCC------cceeEEEE--------------E------Ee------CCeE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITP------TQGFNIKS--------------V------QS------EGFK 83 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~------~~~~~~~~--------------~------~~------~~~~ 83 (162)
.+.++|+++|..++|||||+++|.+........ |....+.. + .. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 457899999999999999999997543211000 11110000 0 00 1367
Q ss_pred EEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 84 ~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+.+||+||+.+|...+......+|++++|+|+++..........+..+ ... ...|+++|+||+|+.+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSK 149 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCH
Confidence 999999999999887777778899999999998642111222222222 111 23479999999999764
No 240
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.55 E-value=7.9e-14 Score=115.97 Aligned_cols=118 Identities=18% Similarity=0.139 Sum_probs=81.4
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCC---------------CCc----cCCcceeE----EEEEEeCCeEEEEEeC
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASED---------------ISH----ITPTQGFN----IKSVQSEGFKLNVWDI 89 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~---------------~~~----~~~~~~~~----~~~~~~~~~~~~l~D~ 89 (162)
....+..+|+++|+.++|||||+++|+... +.. ...|.... ...+.+.+..+.+|||
T Consensus 14 ~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDT 93 (720)
T TIGR00490 14 WKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDT 93 (720)
T ss_pred hCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeC
Confidence 344556899999999999999999997521 110 11122211 1124567789999999
Q ss_pred CCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 90 GGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 90 ~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
||+.++.......++.+|++++|+|+......+.. ..+..... .+.|+++|+||+|....+
T Consensus 94 PG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~~----~~~p~ivviNKiD~~~~~ 154 (720)
T TIGR00490 94 PGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQALK----ENVKPVLFINKVDRLINE 154 (720)
T ss_pred CCccccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHHH----cCCCEEEEEEChhcccch
Confidence 99999988888889999999999998764322222 22222222 356889999999997643
No 241
>PRK12736 elongation factor Tu; Reviewed
Probab=99.55 E-value=6.6e-14 Score=109.24 Aligned_cols=114 Identities=20% Similarity=0.158 Sum_probs=77.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC----------C---------ccCCcceeEEEEEEeCCeEEEEEeCCCCCCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDI----------S---------HITPTQGFNIKSVQSEGFKLNVWDIGGQRKI 95 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~----------~---------~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 95 (162)
..+.++|+++|+.++|||||+++|++... . ....|.......+..++..+.++||||+.+|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 45579999999999999999999976310 0 0111222222334445678999999999888
Q ss_pred hhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCc-EEEEEeCCCCCC
Q psy689 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVP-LLVYANKQDLLG 153 (162)
Q Consensus 96 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~ 153 (162)
.......+..+|++++|+|++.... ......+..+.. .++| +++++||+|+.+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~----~g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQ----VGVPYLVVFLNKVDLVD 142 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCEEEEEEEecCCcc
Confidence 7766666788999999999976322 122222222222 2567 678999999974
No 242
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.55 E-value=6e-14 Score=99.66 Aligned_cols=115 Identities=20% Similarity=0.207 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCcc-----CCcceeEEEEEEeCCeEEEEEeCCCCCCChh----h-------HHhh
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDISHI-----TPTQGFNIKSVQSEGFKLNVWDIGGQRKIRP----Y-------WRNY 102 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~-------~~~~ 102 (162)
++|+++|.+||||||++|.+++...... ..|..+........+..+.++||||..+... . ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999998873222 2344444555666888999999999665421 1 1122
Q ss_pred cccCCEEEEEEECCChhh-HHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 103 FDNTDILIYVIDSADVKR-FEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 103 ~~~~d~vl~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
..+.|++++|+++.+... ...+..++...... ..-.++++|+|++|.....
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~--~~~~~~ivv~T~~d~l~~~ 132 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGE--KVLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh--HhHhcEEEEEECccccCCC
Confidence 456899999999876211 11122233332211 1125899999999987654
No 243
>KOG1191|consensus
Probab=99.54 E-value=1.8e-13 Score=106.24 Aligned_cols=123 Identities=24% Similarity=0.363 Sum_probs=88.9
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEE----EEEeCCeEEEEEeCCCCCC-Chh--------hH
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIK----SVQSEGFKLNVWDIGGQRK-IRP--------YW 99 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~D~~G~~~-~~~--------~~ 99 (162)
.....++.|+++|+||||||||+|.|...+....+|.+|.+.. .++.++.++.|.||+|... ... ..
T Consensus 263 e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA 342 (531)
T KOG1191|consen 263 ERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERA 342 (531)
T ss_pred HHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHH
Confidence 3455679999999999999999999999998888888886643 5677899999999999766 111 12
Q ss_pred HhhcccCCEEEEEEEC--CChhhHHHHHHHHHHHhh-----CCCCCCCcEEEEEeCCCCCCCC
Q psy689 100 RNYFDNTDILIYVIDS--ADVKRFEESGFELHELLS-----DEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 100 ~~~~~~~d~vl~v~d~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
...++.+|++++|+|+ ++-++-..+...+..... ..+..+.+++++.||.|+..+-
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~ 405 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKI 405 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcc
Confidence 4456789999999999 333222222222222211 1223468999999999998873
No 244
>PRK12739 elongation factor G; Reviewed
Probab=99.54 E-value=1.4e-13 Score=114.07 Aligned_cols=115 Identities=23% Similarity=0.193 Sum_probs=83.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC-----CC----------------ccCCcceeEEEEEEeCCeEEEEEeCCCCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED-----IS----------------HITPTQGFNIKSVQSEGFKLNVWDIGGQR 93 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~-----~~----------------~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 93 (162)
..+..+|+++|+.++|||||+++|++.. .. ...-|.......+.+++..+.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 3456789999999999999999997421 10 01112223345677788999999999998
Q ss_pred CChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 94 ~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++...+...++.+|++++|+|+.+...-+. ...+..... .++|+++++||+|+.+.
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~----~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK----YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 888888888999999999999976543222 223333332 36799999999999864
No 245
>KOG1423|consensus
Probab=99.54 E-value=6.3e-14 Score=103.30 Aligned_cols=114 Identities=22% Similarity=0.318 Sum_probs=79.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCC----cceeEEEEEEeCCeEEEEEeCCCCCCChh------------
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDISHITP----TQGFNIKSVQSEGFKLNVWDIGGQRKIRP------------ 97 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------------ 97 (162)
+..+.+.|+++|+|++|||||.|.+.+......+. |.......++-+..++.++||||.-.-..
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 34667999999999999999999999998554443 33344455667889999999999322111
Q ss_pred hHHhhcccCCEEEEEEECCChhh--HHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 98 YWRNYFDNTDILIYVIDSADVKR--FEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 98 ~~~~~~~~~d~vl~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
-.+..++.+|++++++|+++... -..+...+... .++|-++|+||.|..-
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k 199 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLK 199 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcch
Confidence 12345788999999999985221 11222222222 4789999999999764
No 246
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.53 E-value=7.2e-14 Score=109.50 Aligned_cols=116 Identities=18% Similarity=0.106 Sum_probs=72.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCcc------CCcceeEEEE--------------EEe-------C-----Ce
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHI------TPTQGFNIKS--------------VQS-------E-----GF 82 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~------~~~~~~~~~~--------------~~~-------~-----~~ 82 (162)
..+.++++++|+.++|||||+.+|.+...... .-|....+.. +.. + ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 45679999999999999999999965421110 0111111100 100 0 25
Q ss_pred EEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChh-hHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 83 KLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVK-RFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 83 ~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
.+.+|||||+.++..........+|++++|+|++++. .-+.. ..+..+... ...|+++|+||+|+.+.
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~-~~l~~l~~~---~i~~iiVVlNK~Dl~~~ 154 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK-EHLMALDII---GIKNIVIVQNKIDLVSK 154 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH-HHHHHHHHc---CCCcEEEEEEeeccccc
Confidence 7999999999887665555556679999999998542 11111 111111111 23479999999999764
No 247
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.53 E-value=1.7e-13 Score=106.98 Aligned_cols=116 Identities=18% Similarity=0.130 Sum_probs=76.7
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCC-------CC--------c----cCCcceeEEEEEEeCCeEEEEEeCCCCCC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASED-------IS--------H----ITPTQGFNIKSVQSEGFKLNVWDIGGQRK 94 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~-------~~--------~----~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 94 (162)
...+.++|+++|..++|||||+++|++.. .. . ...|.......+..++.++.+|||||+.+
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 34567999999999999999999997431 00 0 11122222333444567899999999998
Q ss_pred ChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcE-EEEEeCCCCCCC
Q psy689 95 IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPL-LVYANKQDLLGA 154 (162)
Q Consensus 95 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-ivv~nK~Dl~~~ 154 (162)
|..........+|++++|+|++....- .....+..+.. .++|. ++++||+|+.+.
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~-qt~e~l~~~~~----~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMP-QTREHILLARQ----VGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEEecccCCH
Confidence 876666666788999999999863221 11222222222 25565 478999999753
No 248
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.53 E-value=1.5e-13 Score=109.39 Aligned_cols=114 Identities=23% Similarity=0.216 Sum_probs=76.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC--CCc------------cC----------------------CcceeEEEEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED--ISH------------IT----------------------PTQGFNIKSVQ 78 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~--~~~------------~~----------------------~~~~~~~~~~~ 78 (162)
....++++++|..++|||||+.+|++.. ... .. -|.......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 3556999999999999999999997553 110 00 01222333455
Q ss_pred eCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHH-HHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 79 SEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFE-LHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 79 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
.++.++.+|||||+.+|.......+..+|++++|+|++....-+....+ +...+ ...|+++++||+|+.+
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-----g~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-----GIKHLVVAVNKMDLVD 174 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-----CCCceEEEEEeecccc
Confidence 6678999999999988876555567899999999998753211111111 11111 1247899999999975
No 249
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.51 E-value=9.5e-14 Score=108.71 Aligned_cols=112 Identities=18% Similarity=0.123 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC--CCc------------cC----------------------CcceeEEEEEEeCCe
Q psy689 39 LRILLLGLDNAGKTTILKTLASED--ISH------------IT----------------------PTQGFNIKSVQSEGF 82 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~--~~~------------~~----------------------~~~~~~~~~~~~~~~ 82 (162)
++++++|+.++|||||+.+|++.. ... .. -|.......+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 479999999999999999986443 100 00 012223344556778
Q ss_pred EEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 83 KLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 83 ~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++.+|||||+.+|.......+..+|++++|+|++....-+.. ..+..+... ...++++++||+|+.+.
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~~~~~~~---~~~~iivviNK~D~~~~ 148 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHSYIASLL---GIRHVVLAVNKMDLVDY 148 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHHHHHHHc---CCCcEEEEEEecccccc
Confidence 999999999998876666678899999999998754221111 111111111 13468999999999753
No 250
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.51 E-value=6e-13 Score=96.43 Aligned_cols=110 Identities=21% Similarity=0.282 Sum_probs=72.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCc--------------------cCC----cceeE-----------------EEEEE
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISH--------------------ITP----TQGFN-----------------IKSVQ 78 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~--------------------~~~----~~~~~-----------------~~~~~ 78 (162)
|++++|+.++|||||++++..+.+.. +++ ..|.. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58899999999999999997543211 110 01100 02233
Q ss_pred eCCeEEEEEeCCCCCCChhhHHhhcc--cCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 79 SEGFKLNVWDIGGQRKIRPYWRNYFD--NTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 79 ~~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
..+..+.+.||||+.++.......+. .+|++++|+|++.... .....++..+.. .++|+++|.||+|+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~----~~ip~ivvvNK~D~~~~ 153 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA----LNIPVFVVVTKIDLAPA 153 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEECccccCH
Confidence 45678999999999988765554453 6899999999876432 122223333322 36799999999998643
No 251
>PRK00007 elongation factor G; Reviewed
Probab=99.48 E-value=7.1e-13 Score=109.98 Aligned_cols=116 Identities=19% Similarity=0.116 Sum_probs=82.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC-----CCc----------------cCCcceeEEEEEEeCCeEEEEEeCCCCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED-----ISH----------------ITPTQGFNIKSVQSEGFKLNVWDIGGQR 93 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~-----~~~----------------~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 93 (162)
..+..+|+++|..++|||||+++|++.. ... ...|.......+.+.+..+.+.||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 3456799999999999999999997421 100 0112222334567788999999999998
Q ss_pred CChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 94 ~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
++.......+..+|++++|+|+...-..+. ...+..+.. .++|+++++||+|+.+..
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEECCCCCCCC
Confidence 887767778889999999999876533222 223333333 367999999999998644
No 252
>PRK00049 elongation factor Tu; Reviewed
Probab=99.48 E-value=6e-13 Score=103.92 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=77.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCC---------------ccCCccee----EEEEEEeCCeEEEEEeCCCCCCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDIS---------------HITPTQGF----NIKSVQSEGFKLNVWDIGGQRKI 95 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~---------------~~~~~~~~----~~~~~~~~~~~~~l~D~~G~~~~ 95 (162)
..+.++++++|..++|||||+++|++.... ......|. ....+..++..+.+.||||+.+|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 456799999999999999999999863100 00001222 22234446678999999999888
Q ss_pred hhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEE-EEEeCCCCCC
Q psy689 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLL-VYANKQDLLG 153 (162)
Q Consensus 96 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~Dl~~ 153 (162)
.......+..+|++++|+|+..... ......+..+.. .++|++ +++||+|+..
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH----cCCCEEEEEEeecCCcc
Confidence 7776777889999999999976422 122223333322 257875 6899999974
No 253
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.48 E-value=7.6e-13 Score=108.11 Aligned_cols=110 Identities=23% Similarity=0.244 Sum_probs=73.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCcc------CCcceeEEEEEEe-CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISHI------TPTQGFNIKSVQS-EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~~------~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
.|+++|+.++|||||+++|.+...... ..|....+..+.. ++..+.+||+||+++|.......+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 588999999999999999987542221 1222222223323 456789999999999877767778899999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCCCCCCCc-EEEEEeCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDEKLTGVP-LLVYANKQDLLGA 154 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~ 154 (162)
+|++.... ......+ .+... .++| ++||+||+|+.+.
T Consensus 82 Vda~eg~~-~qT~ehl-~il~~---lgi~~iIVVlNKiDlv~~ 119 (614)
T PRK10512 82 VACDDGVM-AQTREHL-AILQL---TGNPMLTVALTKADRVDE 119 (614)
T ss_pred EECCCCCc-HHHHHHH-HHHHH---cCCCeEEEEEECCccCCH
Confidence 99886321 1111111 22222 1345 6899999999753
No 254
>KOG0082|consensus
Probab=99.48 E-value=3.7e-13 Score=101.95 Aligned_cols=89 Identities=24% Similarity=0.505 Sum_probs=75.5
Q ss_pred cCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChh----------hHHHHHHHHHHHhhCC
Q psy689 66 ITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVK----------RFEESGFELHELLSDE 135 (162)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~----------~~~~~~~~~~~~~~~~ 135 (162)
..+|.|+....+...+..+.++|.+||..-+..|..++.++++|++|+++++.+ .+......+..+.+..
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 357888888999999999999999999999999999999999999999987532 2333445667788888
Q ss_pred CCCCCcEEEEEeCCCCCCC
Q psy689 136 KLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 136 ~~~~~~iivv~nK~Dl~~~ 154 (162)
+..+.++++++||.||..+
T Consensus 259 ~F~~tsiiLFLNK~DLFeE 277 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLFEE 277 (354)
T ss_pred ccccCcEEEEeecHHHHHH
Confidence 8889999999999999754
No 255
>PLN03127 Elongation factor Tu; Provisional
Probab=99.48 E-value=9.1e-13 Score=104.13 Aligned_cols=114 Identities=18% Similarity=0.134 Sum_probs=76.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcC------CCC---------c----cCCcceeEEEEEEeCCeEEEEEeCCCCCCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASE------DIS---------H----ITPTQGFNIKSVQSEGFKLNVWDIGGQRKI 95 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~------~~~---------~----~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 95 (162)
..+.++|+++|..++|||||+++|.+. ... . ..-|.......+..++.++.+.||||+.+|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 456799999999999999999999632 100 0 011222223344556688999999999988
Q ss_pred hhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCc-EEEEEeCCCCCC
Q psy689 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVP-LLVYANKQDLLG 153 (162)
Q Consensus 96 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~ 153 (162)
.......+..+|++++|+|++.... ......+..+.. .++| +++++||+|+.+
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~----~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEeeccCC
Confidence 7666666677999999999875422 122222222222 2678 578999999975
No 256
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.46 E-value=4.2e-13 Score=110.39 Aligned_cols=116 Identities=16% Similarity=0.105 Sum_probs=76.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCcc--------------CC----------------------cceeEEEEE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDISHI--------------TP----------------------TQGFNIKSV 77 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~--------------~~----------------------~~~~~~~~~ 77 (162)
.....++|+++|++++|||||+++|++..-... .. |.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 344568999999999999999999986431100 00 111223345
Q ss_pred EeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 78 QSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 78 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
...+.++.++||||+.++.......+..+|++++|+|++....- .....+..+... ...+++|++||+|+.+
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~~~~---~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFIASLL---GIRHVVLAVNKMDLVD 171 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHHHHHh---CCCeEEEEEEeccccc
Confidence 55677899999999988766555567889999999998754221 111111111111 2357899999999975
No 257
>PRK12740 elongation factor G; Reviewed
Probab=99.45 E-value=1.1e-12 Score=108.70 Aligned_cols=107 Identities=20% Similarity=0.189 Sum_probs=78.2
Q ss_pred EcCCCCCHHHHHHHHhcCCC-----C----------------ccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhh
Q psy689 44 LGLDNAGKTTILKTLASEDI-----S----------------HITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNY 102 (162)
Q Consensus 44 iG~~~sGKStli~~l~~~~~-----~----------------~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 102 (162)
+|+.++|||||+++|+...- . ....+.+.....+.+++..+.+|||||+.++...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 59999999999999954320 0 01123333445677788999999999999888778888
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 103 FDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 103 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
++.+|++++++|++......... .+..+.. .++|+++|+||+|+....
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~-~~~~~~~----~~~p~iiv~NK~D~~~~~ 128 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTET-VWRQAEK----YGVPRIIFVNKMDRAGAD 128 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHH-HHHHHHH----cCCCEEEEEECCCCCCCC
Confidence 99999999999998765544332 2333332 368999999999987643
No 258
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.45 E-value=2.7e-13 Score=103.89 Aligned_cols=130 Identities=18% Similarity=0.255 Sum_probs=66.9
Q ss_pred HHHHHHHHhHHHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCccee-----EEEEEEeCC-eEEEEE
Q psy689 15 NQVKDLALGLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDIS-HITPTQGF-----NIKSVQSEG-FKLNVW 87 (162)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~-~~~~~~~~-----~~~~~~~~~-~~~~l~ 87 (162)
....++......+.+.+......+++|+|+|++|+|||||||.|.+-... ..+...|. ....+.... -++.+|
T Consensus 12 l~~g~~~~~~s~i~~~l~~~~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lW 91 (376)
T PF05049_consen 12 LEEGNLQEVVSKIREALKDIDNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLW 91 (376)
T ss_dssp HHHT-HHHHHHHHHHHHHHHHH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEE
T ss_pred HHhCCHHHHHHHHHHHHHHhhcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEE
Confidence 33333333333333333444456899999999999999999999764311 11111111 111233332 368999
Q ss_pred eCCCCCCChhhHHhh-----cccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCC
Q psy689 88 DIGGQRKIRPYWRNY-----FDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151 (162)
Q Consensus 88 D~~G~~~~~~~~~~~-----~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 151 (162)
|+||..........| +...|.+|++.+- .|.....++...++. .++|+++|-+|+|.
T Consensus 92 DlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 92 DLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDS 153 (376)
T ss_dssp EE--GGGSS--HHHHHHHTTGGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHH
T ss_pred eCCCCCCCCCCHHHHHHHccccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccc
Confidence 999965543333333 4557988887764 344544554444443 37899999999995
No 259
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.44 E-value=5.4e-13 Score=89.33 Aligned_cols=96 Identities=23% Similarity=0.326 Sum_probs=64.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCC----CChhhHHhhcccCCEEEEEEEC
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQR----KIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
|++++|+.|+|||||+++|.+..... .-|.. +.+.+ ..+||||.- .+..-......++|.|+++.|+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~-~KTq~-----i~~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY-KKTQA-----IEYYD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc-Cccce-----eEecc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence 78999999999999999998876422 22211 22221 348999932 2222233445789999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 116 ADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
+++.+.-. ..+... -+.|+|-|.||.|+.
T Consensus 74 t~~~~~~p--P~fa~~------f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 74 TEPRSVFP--PGFASM------FNKPVIGVITKIDLP 102 (143)
T ss_pred CCCCccCC--chhhcc------cCCCEEEEEECccCc
Confidence 97643222 222222 257999999999999
No 260
>KOG1489|consensus
Probab=99.44 E-value=9.5e-13 Score=97.52 Aligned_cols=112 Identities=27% Similarity=0.400 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC-------CCccCCcceeEEEEEEeCC-eEEEEEeCCCCCCChh-------hHHhhc
Q psy689 39 LRILLLGLDNAGKTTILKTLASED-------ISHITPTQGFNIKSVQSEG-FKLNVWDIGGQRKIRP-------YWRNYF 103 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~l~D~~G~~~~~~-------~~~~~~ 103 (162)
..+.++|-|++|||||++++.... +.+..|..| ++..++ ..+.+-|.||.-.-.. ...+++
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG----~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHi 272 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG----TVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHI 272 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc----eeeccccceeEeccCccccccccccCcccHHHHHHH
Confidence 557899999999999999998765 233344444 444444 4499999999443222 234567
Q ss_pred ccCCEEEEEEECCCh---hhHHHHHHHHHH-HhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 104 DNTDILIYVIDSADV---KRFEESGFELHE-LLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 104 ~~~d~vl~v~d~~~~---~~~~~~~~~~~~-~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
.+|..+++|+|++.. .-++.+...+.+ ......+.+.|.+||.||+|+.+.
T Consensus 273 ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea 327 (366)
T KOG1489|consen 273 ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA 327 (366)
T ss_pred HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH
Confidence 889999999999887 555555443333 233344678999999999999643
No 261
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.43 E-value=1.7e-12 Score=102.70 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=77.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC--CC-------------------------c-------cCCcceeEEEEEEeC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED--IS-------------------------H-------ITPTQGFNIKSVQSE 80 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~--~~-------------------------~-------~~~~~~~~~~~~~~~ 80 (162)
..+.++++++|+.++|||||+.+|+... .. . ..-|.......+.++
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 4567899999999999999999987521 00 0 001122233445667
Q ss_pred CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhh---H---HHHHHHHHHHhhCCCCCCCc-EEEEEeCCCCC
Q psy689 81 GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKR---F---EESGFELHELLSDEKLTGVP-LLVYANKQDLL 152 (162)
Q Consensus 81 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~ 152 (162)
+..+.++|+||+.+|.......+..+|++++|+|++...- + ......+..+.. .++| ++|+.||+|..
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDK 158 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEccccc
Confidence 7899999999999998888888899999999999986420 0 122222222222 2555 78999999954
No 262
>PTZ00416 elongation factor 2; Provisional
Probab=99.43 E-value=2.2e-12 Score=108.84 Aligned_cols=114 Identities=21% Similarity=0.276 Sum_probs=79.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCC--CC----------ccCC---cceeEE----EEEEeC----------CeEE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASED--IS----------HITP---TQGFNI----KSVQSE----------GFKL 84 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~--~~----------~~~~---~~~~~~----~~~~~~----------~~~~ 84 (162)
...+..+|+++|+.++|||||+++|++.. .. .+.+ ..|.+. ..+.+. +..+
T Consensus 15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i 94 (836)
T PTZ00416 15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLI 94 (836)
T ss_pred CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEE
Confidence 34556699999999999999999998632 10 0000 011111 122222 5679
Q ss_pred EEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 85 NVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 85 ~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
.+.||||+.++.......++.+|++++|+|+...-.-+. ...+..+.. .++|+++++||+|+.
T Consensus 95 ~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 95 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH----cCCCEEEEEEChhhh
Confidence 999999999998888888999999999999887533222 233444443 367999999999997
No 263
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.43 E-value=2.5e-12 Score=108.64 Aligned_cols=118 Identities=15% Similarity=0.144 Sum_probs=81.9
Q ss_pred hcCCCCCceEEEEEcCCCCCHHHHHHHHhcCCC--C----------ccCC---cceeE----EEEEEe------------
Q psy689 31 LRSSPEKELRILLLGLDNAGKTTILKTLASEDI--S----------HITP---TQGFN----IKSVQS------------ 79 (162)
Q Consensus 31 ~~~~~~~~~~v~viG~~~sGKStli~~l~~~~~--~----------~~~~---~~~~~----~~~~~~------------ 79 (162)
+.....+..+|+|+|+.++|||||+.+|+...- . .+.+ ..+.+ ...+.+
T Consensus 12 ~~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~ 91 (843)
T PLN00116 12 IMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKG 91 (843)
T ss_pred HhhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccc
Confidence 334566678999999999999999999975431 0 0000 01111 111222
Q ss_pred ----CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 80 ----EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 80 ----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
.+..++++||||+.+|.......++.+|++++|+|+......... ..+..+.. .++|+++++||+|+..
T Consensus 92 ~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~~----~~~p~i~~iNK~D~~~ 164 (843)
T PLN00116 92 ERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRCF 164 (843)
T ss_pred ccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHHH----CCCCEEEEEECCcccc
Confidence 257889999999999988888888999999999998865432322 23344443 3789999999999983
No 264
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.43 E-value=1.6e-12 Score=102.80 Aligned_cols=113 Identities=20% Similarity=0.240 Sum_probs=78.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC--CC-------------------------c-------cCCcceeEEEEEEeC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED--IS-------------------------H-------ITPTQGFNIKSVQSE 80 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~--~~-------------------------~-------~~~~~~~~~~~~~~~ 80 (162)
..+.++++++|+.++|||||+.+|+... .. . ..-|.......+..+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 3557899999999999999998886421 00 0 001122233345567
Q ss_pred CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHH-------HHHHHHHHHhhCCCCCCC-cEEEEEeCCCCC
Q psy689 81 GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFE-------ESGFELHELLSDEKLTGV-PLLVYANKQDLL 152 (162)
Q Consensus 81 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~iivv~nK~Dl~ 152 (162)
+..+.++|+||+.+|.......+..+|++++|+|+++. .|+ .....+..... .++ +++|++||+|+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccCC
Confidence 78999999999999998888889999999999999862 221 22222222211 245 578999999986
No 265
>KOG1145|consensus
Probab=99.42 E-value=9.1e-13 Score=103.64 Aligned_cols=117 Identities=25% Similarity=0.315 Sum_probs=89.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCC-----CccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDI-----SHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDI 108 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 108 (162)
..+++.-|.++|.-..|||||+..|.+... +-....+|-....+. .+..+++.||||+..|..++.+-.+-+|.
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccE
Confidence 345677899999999999999999988773 233445555555566 66899999999999999999888888999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 109 LIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+++|+.++|.-- ..-.+.+++....+.|++|.+||+|..+..+
T Consensus 228 vVLVVAadDGVm-----pQT~EaIkhAk~A~VpiVvAinKiDkp~a~p 270 (683)
T KOG1145|consen 228 VVLVVAADDGVM-----PQTLEAIKHAKSANVPIVVAINKIDKPGANP 270 (683)
T ss_pred EEEEEEccCCcc-----HhHHHHHHHHHhcCCCEEEEEeccCCCCCCH
Confidence 999999987321 2222223333346899999999999887654
No 266
>COG2262 HflX GTPases [General function prediction only]
Probab=99.42 E-value=8.7e-12 Score=95.40 Aligned_cols=121 Identities=22% Similarity=0.324 Sum_probs=87.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC---CCccCCcceeEEEEEEeC-CeEEEEEeCCCCCC-ChhhH-------Hhh
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED---ISHITPTQGFNIKSVQSE-GFKLNVWDIGGQRK-IRPYW-------RNY 102 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~---~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~-~~~~~-------~~~ 102 (162)
...-..|.++|=+++|||||+|.|.+.. ......|...+...+... +..+.+-||-|.-+ ..... ...
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 4456789999999999999999999776 344566777777777776 58888999999433 22211 223
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 103 FDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 103 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
...+|+++.|+|++++.-...+ .....++.......+|+++|.||.|+..+..
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~ 321 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEE 321 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchh
Confidence 4679999999999998544443 3345555555556799999999999876654
No 267
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.40 E-value=2e-12 Score=93.05 Aligned_cols=116 Identities=22% Similarity=0.210 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCcc-----CCcceeEEEEEEeCCeEEEEEeCCCCCCChhh-------HH----hh
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDISHI-----TPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPY-------WR----NY 102 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------~~----~~ 102 (162)
++|+++|.+||||||++|.+++...... +.|..+........+..+.++||||..+.... .. ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 5899999999999999999998873322 23445556666888999999999995443211 11 12
Q ss_pred cccCCEEEEEEECCChhhHH-HHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 103 FDNTDILIYVIDSADVKRFE-ESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 103 ~~~~d~vl~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
..+.|++|+|+..++...-+ .+..++..+..... -..++||+|..|-..+..
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI--WKHTIVVFTHADELEDDS 133 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTT
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH--HhHhhHHhhhcccccccc
Confidence 35679999999988322111 12333444433211 246899999888776654
No 268
>KOG4423|consensus
Probab=99.39 E-value=4.6e-15 Score=101.83 Aligned_cols=119 Identities=28% Similarity=0.385 Sum_probs=95.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEE--EEEEeCC---eEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNI--KSVQSEG---FKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~--~~~~~~~---~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
..-+|++|+|.-|+|||++++++.... ...+..++|..+ ....+++ ++++|||..||.++..+.+-+++.+++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 345899999999999999999987655 334556666433 2344544 5788999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCC---CCCCcEEEEEeCCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEK---LTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~~~ 154 (162)
.+|||+++.-+|+....|..+.-.... ..+.|+++..||||....
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~ 150 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKS 150 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChH
Confidence 999999999999999999877655433 246899999999998643
No 269
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.39 E-value=3.8e-12 Score=99.30 Aligned_cols=87 Identities=24% Similarity=0.454 Sum_probs=71.7
Q ss_pred CCcceeEEEEEEe-CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCCh----------hhHHHHHHHHHHHhhCC
Q psy689 67 TPTQGFNIKSVQS-EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADV----------KRFEESGFELHELLSDE 135 (162)
Q Consensus 67 ~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~----------~~~~~~~~~~~~~~~~~ 135 (162)
.+|.|+....+.. .+..+.++|++|+...+..|..++.++++|++|+++++. ..+......+..+.+..
T Consensus 220 ~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~ 299 (389)
T PF00503_consen 220 VKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNP 299 (389)
T ss_dssp ---SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSG
T ss_pred CCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCc
Confidence 4567777778888 889999999999999999999999999999999997642 33666677788888888
Q ss_pred CCCCCcEEEEEeCCCCCC
Q psy689 136 KLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 136 ~~~~~~iivv~nK~Dl~~ 153 (162)
...+.|++|++||.|+..
T Consensus 300 ~~~~~~iil~lnK~D~f~ 317 (389)
T PF00503_consen 300 WFKNTPIILFLNKIDLFE 317 (389)
T ss_dssp GGTTSEEEEEEE-HHHHH
T ss_pred ccccCceEEeeecHHHHH
Confidence 888999999999999864
No 270
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.37 E-value=8.6e-12 Score=100.62 Aligned_cols=111 Identities=23% Similarity=0.460 Sum_probs=79.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEE----EEEEeCCeEEEEEeCCCCCCChhh------HHhhc--cc
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNI----KSVQSEGFKLNVWDIGGQRKIRPY------WRNYF--DN 105 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~D~~G~~~~~~~------~~~~~--~~ 105 (162)
..+++++|.||+||||++|++++... .....+|.+. ..+...+.++++.|+||.-..... .+.++ ..
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 45799999999999999999998862 2344555544 356667888999999995444322 23333 34
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 106 TDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 106 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
.|+++.|+|+++.+.--.... ++++ -+.|+++++|++|....+.
T Consensus 82 ~D~ivnVvDAtnLeRnLyltl---QLlE----~g~p~ilaLNm~D~A~~~G 125 (653)
T COG0370 82 PDLIVNVVDATNLERNLYLTL---QLLE----LGIPMILALNMIDEAKKRG 125 (653)
T ss_pred CCEEEEEcccchHHHHHHHHH---HHHH----cCCCeEEEeccHhhHHhcC
Confidence 699999999998654333333 3333 2789999999999877654
No 271
>KOG1490|consensus
Probab=99.36 E-value=2.2e-12 Score=100.61 Aligned_cols=135 Identities=15% Similarity=0.181 Sum_probs=91.2
Q ss_pred hHHHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC--CCcc-CCcceeEEEEEEeCCeEEEEEeCCCCCCChhhH
Q psy689 23 GLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED--ISHI-TPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYW 99 (162)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 99 (162)
....++..+....++.-+++++|-+++|||||++.+.... ...+ .+|.+.....+...-.+.++.||||.-+....-
T Consensus 153 qVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEd 232 (620)
T KOG1490|consen 153 QVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEED 232 (620)
T ss_pred HHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhh
Confidence 3355566777788899999999999999999999988776 2333 334444555566666778889999965543221
Q ss_pred Hhh--------ccc-CCEEEEEEECCChhhHH--HHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCCC
Q psy689 100 RNY--------FDN-TDILIYVIDSADVKRFE--ESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAGY 159 (162)
Q Consensus 100 ~~~--------~~~-~d~vl~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~~ 159 (162)
... +.+ -.+||++.|++..+.+. .-...+..|.-. ..+.|+|+|+||+|+.+....++
T Consensus 233 rN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL--FaNK~~IlvlNK~D~m~~edL~~ 301 (620)
T KOG1490|consen 233 RNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL--FANKVTILVLNKIDAMRPEDLDQ 301 (620)
T ss_pred hhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH--hcCCceEEEeecccccCccccCH
Confidence 111 111 15699999998755433 333344444322 35889999999999999887664
No 272
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.36 E-value=2.6e-11 Score=87.94 Aligned_cols=113 Identities=20% Similarity=0.249 Sum_probs=72.5
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
....++..|+++|++|+|||||++.+.... ........|. .......+.++.++||||.- ... ....+.+|++++
T Consensus 34 ~~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVll 109 (225)
T cd01882 34 PEEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLL 109 (225)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HHH-HHHHHhcCEEEE
Confidence 446677889999999999999999988653 2112222232 11223467889999999853 222 344688999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCc-EEEEEeCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVP-LLVYANKQDLLGA 154 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~~ 154 (162)
++|++........ ..+.. ... .+.| +++|+||.|+.+.
T Consensus 110 viDa~~~~~~~~~-~i~~~-l~~---~g~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 110 LIDASFGFEMETF-EFLNI-LQV---HGFPRVMGVLTHLDLFKK 148 (225)
T ss_pred EEecCcCCCHHHH-HHHHH-HHH---cCCCeEEEEEeccccCCc
Confidence 9998754332221 22222 222 2456 4559999999753
No 273
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.35 E-value=1.5e-11 Score=102.73 Aligned_cols=117 Identities=22% Similarity=0.207 Sum_probs=79.2
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCC--CCc----------cCC-------cceeEEEEEE----eCCeEEEEEeC
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASED--ISH----------ITP-------TQGFNIKSVQ----SEGFKLNVWDI 89 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~--~~~----------~~~-------~~~~~~~~~~----~~~~~~~l~D~ 89 (162)
....+..+|+++|+.++|||||+.+|+... ... +.+ |.......+. ..+..+.++||
T Consensus 15 ~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 94 (731)
T PRK07560 15 KNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDT 94 (731)
T ss_pred hchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcC
Confidence 345567789999999999999999997532 100 000 0111111122 24688999999
Q ss_pred CCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 90 GGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 90 ~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
||+.+|.......++.+|++++|+|+......+. ...+...... +.|.+++.||+|+...
T Consensus 95 PG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~~----~~~~iv~iNK~D~~~~ 154 (731)
T PRK07560 95 PGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALRE----RVKPVLFINKVDRLIK 154 (731)
T ss_pred CCccChHHHHHHHHHhcCEEEEEEECCCCCCccH-HHHHHHHHHc----CCCeEEEEECchhhcc
Confidence 9999998888888999999999999876433222 2233333332 4578999999998754
No 274
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2.3e-12 Score=98.55 Aligned_cols=114 Identities=21% Similarity=0.271 Sum_probs=80.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC--CC---------------c-----------------cCCcceeEEEEEEeC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED--IS---------------H-----------------ITPTQGFNIKSVQSE 80 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~--~~---------------~-----------------~~~~~~~~~~~~~~~ 80 (162)
..+.++++++|+..+|||||+-+|++.. .. . ..-|.......++.+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 4568999999999999999999987542 00 0 011222333445567
Q ss_pred CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChh--------hHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 81 GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVK--------RFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 81 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
.+.+++.|+||+.+|-.-......++|+.++|+|+++.+ ........+...+ .-..++|+.||+|+.
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-----Gi~~lIVavNKMD~v 158 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-----GIKQLIVAVNKMDLV 158 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-----CCceEEEEEEccccc
Confidence 789999999999998877777778899999999998642 1112222223322 345799999999998
Q ss_pred C
Q psy689 153 G 153 (162)
Q Consensus 153 ~ 153 (162)
.
T Consensus 159 ~ 159 (428)
T COG5256 159 S 159 (428)
T ss_pred c
Confidence 7
No 275
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=5.5e-12 Score=99.18 Aligned_cols=116 Identities=22% Similarity=0.232 Sum_probs=83.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCcc-----CCcceeEEEEEEe-CCeEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHI-----TPTQGFNIKSVQS-EGFKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
.++.-|.++|.-..|||||+..+........ ...+|-....+.. +.-.+.+.|||||..|..++.+-.+-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 4567799999999999999999987764332 2223322222221 346899999999999999998888889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++|+++++.--- +....+... +..+.|++|+.||+|..+.++
T Consensus 83 ILVVa~dDGv~p-QTiEAI~ha----k~a~vP~iVAiNKiDk~~~np 124 (509)
T COG0532 83 ILVVAADDGVMP-QTIEAINHA----KAAGVPIVVAINKIDKPEANP 124 (509)
T ss_pred EEEEEccCCcch-hHHHHHHHH----HHCCCCEEEEEecccCCCCCH
Confidence 999999874221 111222222 225899999999999997654
No 276
>KOG3886|consensus
Probab=99.33 E-value=1.9e-12 Score=92.12 Aligned_cols=120 Identities=23% Similarity=0.370 Sum_probs=83.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC----CCccCCcceeEEEEEEe-CCeEEEEEeCCCCCCChh-----hHHhhcccC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED----ISHITPTQGFNIKSVQS-EGFKLNVWDIGGQRKIRP-----YWRNYFDNT 106 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~----~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~-----~~~~~~~~~ 106 (162)
.+-||+++|.+||||||+-..++.+. .....+|+.++...+.. ++..+++||++|++.+.. .....++..
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 35689999999999999876666444 23334444555555544 558899999999986543 234567888
Q ss_pred CEEEEEEECCChhhHHH---HHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy689 107 DILIYVIDSADVKRFEE---SGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAG 158 (162)
Q Consensus 107 d~vl~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~~ 158 (162)
+++++|||++..+--.+ ....+...+++. +...+.+..+|+|+......+
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~~d~r~ 135 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQEDARE 135 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcccchHH
Confidence 99999999987543222 233334444443 578999999999998876544
No 277
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.31 E-value=4.2e-11 Score=82.75 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=42.1
Q ss_pred EEEEEeCCCCCC----ChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCC
Q psy689 83 KLNVWDIGGQRK----IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQ 149 (162)
Q Consensus 83 ~~~l~D~~G~~~----~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 149 (162)
.+.++|+||... ....+..++..+|++++|.+.+...+-.... .+.+..... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~-~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDME-FLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHH-HHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHH-HHHHHhcCC---CCeEEEEEcCC
Confidence 488999999543 2355677889999999999998754433333 333333332 33499999984
No 278
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.29 E-value=2.8e-11 Score=90.70 Aligned_cols=112 Identities=29% Similarity=0.361 Sum_probs=74.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------CCccCCcceeEEEEEEe-CCeEEEEEeCCCCCCChh-------hHHhhcc
Q psy689 40 RILLLGLDNAGKTTILKTLASED-------ISHITPTQGFNIKSVQS-EGFKLNVWDIGGQRKIRP-------YWRNYFD 104 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~-------~~~~~~~ 104 (162)
-|.++|-|++|||||++.+.... +.+..|..| .+.. ...++.+-|.||.-.-.. ...+++.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLG----vV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE 236 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLG----VVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIE 236 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCccc----EEEecCCCcEEEecCcccccccccCCCccHHHHHHHH
Confidence 46799999999999999998765 223334444 4443 456788999999443221 2345678
Q ss_pred cCCEEEEEEECCChhh---HHHHHHHHHHHhhC-CCCCCCcEEEEEeCCCCCCCC
Q psy689 105 NTDILIYVIDSADVKR---FEESGFELHELLSD-EKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 105 ~~d~vl~v~d~~~~~~---~~~~~~~~~~~~~~-~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+|-+++.|+|++..+. .++......+...+ ..+.+.|.+||+||+|+..+.
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~ 291 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE 291 (369)
T ss_pred hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH
Confidence 8999999999885443 33333333333333 335688999999999965543
No 279
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.25 E-value=7.2e-11 Score=88.19 Aligned_cols=113 Identities=21% Similarity=0.300 Sum_probs=66.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCcc-----------CCcceeEEEE--EEeCC--eEEEEEeCCCCCCChh---hH
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDISHI-----------TPTQGFNIKS--VQSEG--FKLNVWDIGGQRKIRP---YW 99 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~~~-----------~~~~~~~~~~--~~~~~--~~~~l~D~~G~~~~~~---~~ 99 (162)
.++|+|+|++|+|||||+|.|++...... ..+....... +...+ .++.++||||..+... .|
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 58999999999999999999998762211 1122222222 22233 6788999999443211 11
Q ss_pred -----------Hhhc-------------ccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 100 -----------RNYF-------------DNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 100 -----------~~~~-------------~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
..++ .+.|++|++++++....-......++.+. ..+++|.|+.|+|.....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS-----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT-----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc-----ccccEEeEEecccccCHH
Confidence 0111 23599999999876322222223444443 368999999999987643
No 280
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.25 E-value=2.4e-10 Score=92.70 Aligned_cols=121 Identities=17% Similarity=0.134 Sum_probs=75.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccC----CcceeEEEEEEeCCeEEEEEeCCCCCCCh------hh----HHh
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHIT----PTQGFNIKSVQSEGFKLNVWDIGGQRKIR------PY----WRN 101 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~----~~~ 101 (162)
.-.++|+++|.+|+||||++|.+++....... .|...........+..+.++||||..+.. .. ...
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 34578999999999999999999988632222 12222222334567899999999976542 11 122
Q ss_pred hcc--cCCEEEEEEECCChhhHHHHHHHHHHHhhCCCC-CCCcEEEEEeCCCCCCCCC
Q psy689 102 YFD--NTDILIYVIDSADVKRFEESGFELHELLSDEKL-TGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 102 ~~~--~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~iivv~nK~Dl~~~~~ 156 (162)
++. ..|+||+|..++..........++..+....+. -=..+|||+|+.|...++.
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg 253 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDG 253 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCC
Confidence 333 479999999876432211222333333322211 1257899999999997654
No 281
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.23 E-value=7.7e-11 Score=91.49 Aligned_cols=115 Identities=22% Similarity=0.345 Sum_probs=87.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC--CC-------------ccCCcceeEE----EEEEeCCeEEEEEeCCCCCCChhh
Q psy689 38 ELRILLLGLDNAGKTTILKTLASED--IS-------------HITPTQGFNI----KSVQSEGFKLNVWDIGGQRKIRPY 98 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~--~~-------------~~~~~~~~~~----~~~~~~~~~~~l~D~~G~~~~~~~ 98 (162)
--+|+|+.....|||||+..|+... +. ......|++. ..+.+.+.+|++.||||+.+|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 3578999999999999999997553 11 1112233332 246778899999999999999999
Q ss_pred HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 99 WRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 99 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
.+..+...|++++++|+... -+.+....+...+.. +.+.|||.||.|..+.++.
T Consensus 85 VERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~ 138 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALAL----GLKPIVVINKIDRPDARPD 138 (603)
T ss_pred hhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHH
Confidence 99999999999999998763 233444555555543 6778999999999998864
No 282
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.23 E-value=4.9e-11 Score=90.46 Aligned_cols=76 Identities=26% Similarity=0.403 Sum_probs=53.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC-------CccCCcceeEEEEE-------------------E-eCCeEEEEEeCCCC-
Q psy689 41 ILLLGLDNAGKTTILKTLASEDI-------SHITPTQGFNIKSV-------------------Q-SEGFKLNVWDIGGQ- 92 (162)
Q Consensus 41 v~viG~~~sGKStli~~l~~~~~-------~~~~~~~~~~~~~~-------------------~-~~~~~~~l~D~~G~- 92 (162)
|+++|.++||||||+|++++... ....|+.|...... . .....+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57899999999999999998762 23345555433211 0 12367999999997
Q ss_pred ---CCChhhHHh---hcccCCEEEEEEECC
Q psy689 93 ---RKIRPYWRN---YFDNTDILIYVIDSA 116 (162)
Q Consensus 93 ---~~~~~~~~~---~~~~~d~vl~v~d~~ 116 (162)
..+..+... .++++|++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 334433333 589999999999986
No 283
>PRK09866 hypothetical protein; Provisional
Probab=99.22 E-value=4.8e-10 Score=90.78 Aligned_cols=69 Identities=22% Similarity=0.299 Sum_probs=44.6
Q ss_pred eEEEEEeCCCCCCC-----hhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 82 FKLNVWDIGGQRKI-----RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 82 ~~~~l~D~~G~~~~-----~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
..+.+.||||.... .......+..+|+|++|+|.+..-+... ..+...++... ...|+++|+||+|+.+
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~d 303 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQD 303 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCC
Confidence 45778899997542 1223446889999999999986433222 22223232211 1359999999999964
No 284
>KOG0099|consensus
Probab=99.22 E-value=5e-11 Score=86.56 Aligned_cols=86 Identities=26% Similarity=0.521 Sum_probs=70.1
Q ss_pred cceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHhhCCCCC
Q psy689 69 TQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLSDEKLT 138 (162)
Q Consensus 69 ~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 138 (162)
|.|+....+..+..+++.+|.+|+.+-++.|..++.+..++++|+..++ ...+......++.+-++.++.
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 5556666777778899999999999999999999999999999998764 234444555667777777788
Q ss_pred CCcEEEEEeCCCCCCC
Q psy689 139 GVPLLVYANKQDLLGA 154 (162)
Q Consensus 139 ~~~iivv~nK~Dl~~~ 154 (162)
.+.+|+++||.|++.+
T Consensus 269 tisvIlFLNKqDllae 284 (379)
T KOG0099|consen 269 TISVILFLNKQDLLAE 284 (379)
T ss_pred hhheeEEecHHHHHHH
Confidence 9999999999998653
No 285
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=2.5e-10 Score=94.10 Aligned_cols=117 Identities=22% Similarity=0.260 Sum_probs=87.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC--CC---c------------cCCcceeE----EEEEEeCC-eEEEEEeCCCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED--IS---H------------ITPTQGFN----IKSVQSEG-FKLNVWDIGGQ 92 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~--~~---~------------~~~~~~~~----~~~~~~~~-~~~~l~D~~G~ 92 (162)
..+-.+|.++|+-.+||||+..+++... .. . .....|++ -.++.+.+ ..++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 4567799999999999999999986432 11 1 01112222 23566774 99999999999
Q ss_pred CCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 93 ~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
-+|.......++-+|++++|+|+......+... .|++..+. ++|.+++.||+|....+.
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEt-v~rqa~~~----~vp~i~fiNKmDR~~a~~ 145 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTET-VWRQADKY----GVPRILFVNKMDRLGADF 145 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHH-HHHHHhhc----CCCeEEEEECccccccCh
Confidence 999999999999999999999998755444433 34444443 789999999999988764
No 286
>KOG0462|consensus
Probab=99.20 E-value=1.3e-10 Score=91.67 Aligned_cols=117 Identities=21% Similarity=0.252 Sum_probs=85.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC--C------------CccCCcceeEEE----EEEeCC---eEEEEEeCCCCCC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED--I------------SHITPTQGFNIK----SVQSEG---FKLNVWDIGGQRK 94 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~--~------------~~~~~~~~~~~~----~~~~~~---~~~~l~D~~G~~~ 94 (162)
++--++.|+..-..|||||..+|+... . -+.....|++.. .+.+.+ +-++++|||||-+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 456789999999999999999986322 0 011122333322 333433 8999999999999
Q ss_pred ChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 95 IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 95 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
|.....+.+..||++|+|+|++..-.-+.....+.... .+..+|.|+||.|+..+++.
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~adpe 195 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSADPE 195 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCCHH
Confidence 99999999999999999999987655444444333332 37899999999999988754
No 287
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.18 E-value=1.7e-10 Score=91.45 Aligned_cols=117 Identities=18% Similarity=0.158 Sum_probs=74.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCC--------cceeEEE---------------EEEe-----------
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDISHITP--------TQGFNIK---------------SVQS----------- 79 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~--------~~~~~~~---------------~~~~----------- 79 (162)
.....++|.++|.-..|||||+..|.+........ ..|+... .+..
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 34667999999999999999999998754211100 0111100 0000
Q ss_pred -----CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 80 -----EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 80 -----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
-...+.++|+||+.+|.......+..+|++++|+|++...........+. +.... .-.+++||+||+|+.+
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~ 185 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVK 185 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccC
Confidence 02368899999999887776677788999999999986311111122221 22111 2347899999999975
No 288
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.17 E-value=2e-10 Score=75.11 Aligned_cols=90 Identities=19% Similarity=0.273 Sum_probs=64.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCcc-C-CcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDISHI-T-PTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSA 116 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~ 116 (162)
+|++++|+.|+|||+++.++....+... . ++.+ +......+.+.++.+++|++.+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 4899999999999999999865554321 1 2222 2333345678889999999999
Q ss_pred ChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 117 DVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+..+++.+ |...+.... ..+.|.++++||.|+.+.
T Consensus 58 ~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~ 92 (124)
T smart00010 58 DRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEE 92 (124)
T ss_pred CHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHhh
Confidence 98888665 655444332 246899999999998543
No 289
>KOG1532|consensus
Probab=99.15 E-value=2.4e-10 Score=83.59 Aligned_cols=121 Identities=23% Similarity=0.364 Sum_probs=71.5
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccC--------------------------------------CcceeE
Q psy689 32 RSSPEKELRILLLGLDNAGKTTILKTLASEDISHIT--------------------------------------PTQGFN 73 (162)
Q Consensus 32 ~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~--------------------------------------~~~~~~ 73 (162)
.....+++.++++|..|||||||+++|...-..... |..|+.
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 456677899999999999999999998654321111 111100
Q ss_pred EE------EE---------EeCCeEEEEEeCCCCCCCh------hhHHhhcc--cCCEEEEEEECC---ChhhHHHHHHH
Q psy689 74 IK------SV---------QSEGFKLNVWDIGGQRKIR------PYWRNYFD--NTDILIYVIDSA---DVKRFEESGFE 127 (162)
Q Consensus 74 ~~------~~---------~~~~~~~~l~D~~G~~~~~------~~~~~~~~--~~d~vl~v~d~~---~~~~~~~~~~~ 127 (162)
.. .+ ........++|||||-..- ...-..+. ..-++++++|.. ++.+|=....+
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 00 00 0012457899999965421 11111111 235678888853 34444443334
Q ss_pred HHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 128 LHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 128 ~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
...++.+ .+.|.++|.||+|+.+..
T Consensus 173 AcSilyk---tklp~ivvfNK~Dv~d~~ 197 (366)
T KOG1532|consen 173 ACSILYK---TKLPFIVVFNKTDVSDSE 197 (366)
T ss_pred HHHHHHh---ccCCeEEEEecccccccH
Confidence 4444444 588999999999998754
No 290
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.15 E-value=4.4e-10 Score=83.83 Aligned_cols=92 Identities=20% Similarity=0.247 Sum_probs=64.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC--CCcc-CCcceeEEEEEEeCCeEEEEEeCCCCCCCh-------hhHHhhcccCC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASED--ISHI-TPTQGFNIKSVQSEGFKLNVWDIGGQRKIR-------PYWRNYFDNTD 107 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d 107 (162)
-..++++|.|++|||||++.|.+.. ...+ .+|.......+..++.++++.|+||.-.-. .......+.||
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~AD 142 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNAD 142 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCC
Confidence 4789999999999999999999887 2222 233333444788899999999999832221 23345678999
Q ss_pred EEEEEEECCChhh-HHHHHHHHH
Q psy689 108 ILIYVIDSADVKR-FEESGFELH 129 (162)
Q Consensus 108 ~vl~v~d~~~~~~-~~~~~~~~~ 129 (162)
++++|+|+..... .+.+...+.
T Consensus 143 lIiiVld~~~~~~~~~~i~~ELe 165 (365)
T COG1163 143 LIIIVLDVFEDPHHRDIIERELE 165 (365)
T ss_pred EEEEEEecCCChhHHHHHHHHHH
Confidence 9999999975443 333444433
No 291
>KOG0468|consensus
Probab=99.13 E-value=5.2e-10 Score=90.09 Aligned_cols=124 Identities=22% Similarity=0.316 Sum_probs=88.1
Q ss_pred HHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCC----------------cceeEEE----EEEe-----
Q psy689 25 LAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITP----------------TQGFNIK----SVQS----- 79 (162)
Q Consensus 25 ~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~----------------~~~~~~~----~~~~----- 79 (162)
...+..+-.......+|+++|+-.+|||+|+..|.........+ ..|+..+ ++..
T Consensus 115 ~~yl~~l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~ 194 (971)
T KOG0468|consen 115 LEYLAGLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKG 194 (971)
T ss_pred HHHHHHhccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcC
Confidence 34455555677788999999999999999999987554222111 1111111 1111
Q ss_pred CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 80 EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 80 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
..+-+++.||||+-+|.......++.+|++++++|+.....++.. ..++.+++ ...|+++|+||.|+.-
T Consensus 195 KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhaiq----~~~~i~vviNKiDRLi 263 (971)
T KOG0468|consen 195 KSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAIQ----NRLPIVVVINKVDRLI 263 (971)
T ss_pred ceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHHh----ccCcEEEEEehhHHHH
Confidence 235688999999999999999999999999999999876555443 33444444 3789999999999753
No 292
>KOG0085|consensus
Probab=99.13 E-value=3.7e-11 Score=85.88 Aligned_cols=88 Identities=25% Similarity=0.467 Sum_probs=67.3
Q ss_pred CcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECC----------ChhhHHHHHHHHHHHhhCCCC
Q psy689 68 PTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSA----------DVKRFEESGFELHELLSDEKL 137 (162)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~----------~~~~~~~~~~~~~~~~~~~~~ 137 (162)
||.|+....+..++..+.+.|.+|+..-++.|..++...-.+++++..+ +...++.....+.-++..++.
T Consensus 185 PTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF 264 (359)
T KOG0085|consen 185 PTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 264 (359)
T ss_pred CcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccc
Confidence 4555555556666778889999999999999999988877776666543 344555555567778888888
Q ss_pred CCCcEEEEEeCCCCCCCC
Q psy689 138 TGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 138 ~~~~iivv~nK~Dl~~~~ 155 (162)
.+.++++++||.|+.++.
T Consensus 265 ~nssVIlFLNKkDlLEek 282 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEK 282 (359)
T ss_pred cCCceEEEechhhhhhhh
Confidence 899999999999998764
No 293
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.13 E-value=9.5e-10 Score=85.82 Aligned_cols=78 Identities=26% Similarity=0.391 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--c-----cCCcceeEEEEEE--------------------eCCeEEEEEeCCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDIS--H-----ITPTQGFNIKSVQ--------------------SEGFKLNVWDIGG 91 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~--~-----~~~~~~~~~~~~~--------------------~~~~~~~l~D~~G 91 (162)
++|+++|.++||||||+|+|++.... . ..|+.|....... ....++++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 58999999999999999999987632 1 1344443221100 1226789999999
Q ss_pred CC----CChhhHHh---hcccCCEEEEEEECC
Q psy689 92 QR----KIRPYWRN---YFDNTDILIYVIDSA 116 (162)
Q Consensus 92 ~~----~~~~~~~~---~~~~~d~vl~v~d~~ 116 (162)
.. ....+-.. .++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 53 22233233 488999999999986
No 294
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.08 E-value=2e-10 Score=83.91 Aligned_cols=68 Identities=22% Similarity=0.304 Sum_probs=36.8
Q ss_pred EEEEEeCCCCCCChhhHHhhc--------ccCCEEEEEEECC---ChhhHHHHH-HHHHHHhhCCCCCCCcEEEEEeCCC
Q psy689 83 KLNVWDIGGQRKIRPYWRNYF--------DNTDILIYVIDSA---DVKRFEESG-FELHELLSDEKLTGVPLLVYANKQD 150 (162)
Q Consensus 83 ~~~l~D~~G~~~~~~~~~~~~--------~~~d~vl~v~d~~---~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D 150 (162)
.+.++|||||.++-..+...- ...-++++++|.. ++..|-... ....-+.+ -+.|.+.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~----~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR----LELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH----HTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh----CCCCEEEeeeccC
Confidence 689999999988655543322 3346788999964 444443322 22222332 2789999999999
Q ss_pred CCCC
Q psy689 151 LLGA 154 (162)
Q Consensus 151 l~~~ 154 (162)
+...
T Consensus 168 l~~~ 171 (238)
T PF03029_consen 168 LLSK 171 (238)
T ss_dssp GS-H
T ss_pred cccc
Confidence 9873
No 295
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.08 E-value=9.5e-09 Score=75.03 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=42.7
Q ss_pred eEEEEEeCCCCCCC-------------hhhHHhhcc-cCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEe
Q psy689 82 FKLNVWDIGGQRKI-------------RPYWRNYFD-NTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYAN 147 (162)
Q Consensus 82 ~~~~l~D~~G~~~~-------------~~~~~~~~~-~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~n 147 (162)
..+.++|+||.... ..+...+++ ..+.+++|+|++..-.-........... ..+.++++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld----~~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD----PQGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH----HcCCcEEEEEE
Confidence 46889999997421 123345666 4568999998764212112122222221 14789999999
Q ss_pred CCCCCCCC
Q psy689 148 KQDLLGAA 155 (162)
Q Consensus 148 K~Dl~~~~ 155 (162)
|.|.....
T Consensus 201 K~D~~~~~ 208 (240)
T smart00053 201 KLDLMDEG 208 (240)
T ss_pred CCCCCCcc
Confidence 99998643
No 296
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.07 E-value=1.6e-09 Score=83.80 Aligned_cols=121 Identities=20% Similarity=0.268 Sum_probs=74.6
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcC----CCC-----------ccCCcce-------eEE---EEEEe---
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASE----DIS-----------HITPTQG-------FNI---KSVQS--- 79 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~----~~~-----------~~~~~~~-------~~~---~~~~~--- 79 (162)
.+++.....-.+.++++|+.++|||||+|++... ... -.++..| ..+ ..+..
T Consensus 7 ykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~ 86 (492)
T TIGR02836 7 YKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININ 86 (492)
T ss_pred HHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEecc
Confidence 3444444566899999999999999999999877 322 1122222 222 22222
Q ss_pred --CCeEEEEEeCCCCCCChh-------h----------------------HHhhcc-cCCEEEEEE-ECC----ChhhHH
Q psy689 80 --EGFKLNVWDIGGQRKIRP-------Y----------------------WRNYFD-NTDILIYVI-DSA----DVKRFE 122 (162)
Q Consensus 80 --~~~~~~l~D~~G~~~~~~-------~----------------------~~~~~~-~~d~vl~v~-d~~----~~~~~~ 122 (162)
-..++.+.||+|-..-.. . .+..++ +++..++|. |.+ .++.+.
T Consensus 87 ~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~ 166 (492)
T TIGR02836 87 EGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYV 166 (492)
T ss_pred CCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccch
Confidence 236889999999332110 1 344566 889999888 764 122333
Q ss_pred HHHH-HHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 123 ESGF-ELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 123 ~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
.+.. ++.++.. .++|+++|+||.|-.
T Consensus 167 ~aEe~~i~eLk~----~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 167 EAEERVIEELKE----LNKPFIILLNSTHPY 193 (492)
T ss_pred HHHHHHHHHHHh----cCCCEEEEEECcCCC
Confidence 3333 4444333 388999999999943
No 297
>KOG3905|consensus
Probab=99.06 E-value=8e-09 Score=77.36 Aligned_cols=112 Identities=17% Similarity=0.216 Sum_probs=74.5
Q ss_pred HHHHHHhH-HHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEe--C----CeEEEEEeC
Q psy689 17 VKDLALGL-LAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQS--E----GFKLNVWDI 89 (162)
Q Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~--~----~~~~~l~D~ 89 (162)
.+++-..+ .+...+-+...+..-+|+++|+.|+|||||+.+|-+.+. ..+..|..+..+.. + -.++.+|-+
T Consensus 30 gqnlWs~iLsev~T~~~sklpsgk~VlvlGdn~sGKtsLi~klqg~e~--~KkgsgLeY~yl~V~de~RDd~tr~~VWiL 107 (473)
T KOG3905|consen 30 GQNLWSEILSEVSTRTRSKLPSGKNVLVLGDNGSGKTSLISKLQGSET--VKKGSGLEYLYLHVHDEDRDDLTRCNVWIL 107 (473)
T ss_pred hHHHHHHHHHHhhhcccccCCCCCeEEEEccCCCchhHHHHHhhcccc--cCCCCCcceEEEecccccchhhhhcceEEe
Confidence 44443333 333334456677788999999999999999999988873 34444544444333 2 267889999
Q ss_pred CCCCCChhhHHhhcccC----CEEEEEEECCChh-hHHHHHHHHHH
Q psy689 90 GGQRKIRPYWRNYFDNT----DILIYVIDSADVK-RFEESGFELHE 130 (162)
Q Consensus 90 ~G~~~~~~~~~~~~~~~----d~vl~v~d~~~~~-~~~~~~~~~~~ 130 (162)
.|..-+..+....+... -.||+++|.+++. .++.+..|..-
T Consensus 108 DGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~V 153 (473)
T KOG3905|consen 108 DGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASV 153 (473)
T ss_pred cCchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHH
Confidence 99877777665555433 4678899999883 44445556543
No 298
>PRK13768 GTPase; Provisional
Probab=99.03 E-value=4.9e-10 Score=82.68 Aligned_cols=72 Identities=22% Similarity=0.271 Sum_probs=44.4
Q ss_pred EEEEEeCCCCCCC---hhhHHhh---ccc--CCEEEEEEECCChhhHHHHHH--HHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 83 KLNVWDIGGQRKI---RPYWRNY---FDN--TDILIYVIDSADVKRFEESGF--ELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 83 ~~~l~D~~G~~~~---~~~~~~~---~~~--~d~vl~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
.+.+||+||+.+. ...+..+ +.. .+++++++|++...+...... ++....... .+.|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~--~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR--LGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEhHhhc
Confidence 6889999997663 2333222 233 799999999865433222211 222111111 378999999999998
Q ss_pred CCCC
Q psy689 153 GAAP 156 (162)
Q Consensus 153 ~~~~ 156 (162)
....
T Consensus 176 ~~~~ 179 (253)
T PRK13768 176 SEEE 179 (253)
T ss_pred Cchh
Confidence 7654
No 299
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.03 E-value=1.2e-09 Score=85.12 Aligned_cols=116 Identities=19% Similarity=0.212 Sum_probs=85.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC--------------CCccCCcceeEEE------EEEe---CCeEEEEEeCCCCC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED--------------ISHITPTQGFNIK------SVQS---EGFKLNVWDIGGQR 93 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~--------------~~~~~~~~~~~~~------~~~~---~~~~~~l~D~~G~~ 93 (162)
+.-++.++..-..|||||..+++... ........|++.+ .+.. +.+.++++|||||-
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 34578888999999999999986432 1112223333322 1222 44899999999999
Q ss_pred CChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 94 ~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
+|.-...+.+..|.+.|+++|++..-.-+.+...+..+- .+..++.|+||.||...++.
T Consensus 88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpe 146 (603)
T COG0481 88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPE 146 (603)
T ss_pred ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHH
Confidence 998888888899999999999998766666666555553 37799999999999987753
No 300
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=7.2e-10 Score=85.59 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=82.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcC-C--------------CCccC------Ccce----eEEEEEEeCCeEEEEEeC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASE-D--------------ISHIT------PTQG----FNIKSVQSEGFKLNVWDI 89 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~-~--------------~~~~~------~~~~----~~~~~~~~~~~~~~l~D~ 89 (162)
..++-+.+||-.|.+|||||-.+|+.- . ....+ ...| .....+++.+..++|.||
T Consensus 9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDT 88 (528)
T COG4108 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDT 88 (528)
T ss_pred HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCC
Confidence 345668999999999999999887521 1 00111 1122 223456678899999999
Q ss_pred CCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 90 GGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 90 ~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
||+++|..-.-+-+..+|+.++|+|+-..-. ..-......+++.++||+=+.||.|.....+.
T Consensus 89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE-----~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ 151 (528)
T COG4108 89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIE-----PQTLKLFEVCRLRDIPIFTFINKLDREGRDPL 151 (528)
T ss_pred CCccccchhHHHHHHhhheeeEEEecccCcc-----HHHHHHHHHHhhcCCceEEEeeccccccCChH
Confidence 9999998776677788999999999864322 12222233344469999999999998876653
No 301
>PTZ00258 GTP-binding protein; Provisional
Probab=99.01 E-value=3e-09 Score=82.49 Aligned_cols=81 Identities=23% Similarity=0.315 Sum_probs=54.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC--Ccc-CCcceeEEEEEEeC-----------------CeEEEEEeCCCCCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDI--SHI-TPTQGFNIKSVQSE-----------------GFKLNVWDIGGQRK 94 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~--~~~-~~~~~~~~~~~~~~-----------------~~~~~l~D~~G~~~ 94 (162)
.....+|+++|.|+||||||+|+|.+... ..+ ..|...+...+... ..++.+.|+||...
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 45678999999999999999999977652 111 12223333333332 23589999999543
Q ss_pred Ch-------hhHHhhcccCCEEEEEEEC
Q psy689 95 IR-------PYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 95 ~~-------~~~~~~~~~~d~vl~v~d~ 115 (162)
-. ......++.+|++++|+|.
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRA 125 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeC
Confidence 21 1223456889999999997
No 302
>KOG1707|consensus
Probab=99.00 E-value=1e-08 Score=81.59 Aligned_cols=119 Identities=21% Similarity=0.288 Sum_probs=82.7
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCc-----cCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccC
Q psy689 32 RSSPEKELRILLLGLDNAGKTTILKTLASEDISH-----ITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNT 106 (162)
Q Consensus 32 ~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 106 (162)
.+...+-+.+.++|+.++|||.+++.+++..+.. ..+....+......+...+.+-|.+.. ........- ..|
T Consensus 419 ~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~c 496 (625)
T KOG1707|consen 419 KQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AAC 496 (625)
T ss_pred ccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-cee
Confidence 3445556899999999999999999999866333 222222333333344456667777654 333332233 669
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 107 DILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 107 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|+++++||.+++.+|......+...... ...|+++|++|+|+-...
T Consensus 497 Dv~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~ 542 (625)
T KOG1707|consen 497 DVACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVP 542 (625)
T ss_pred eeEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhh
Confidence 9999999999999999877755443332 589999999999997655
No 303
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.00 E-value=2.8e-09 Score=91.17 Aligned_cols=96 Identities=22% Similarity=0.257 Sum_probs=65.4
Q ss_pred CHHHHHHHHhcCCCCc-----cCCcceeEEEEEEeC----------------CeEEEEEeCCCCCCChhhHHhhcccCCE
Q psy689 50 GKTTILKTLASEDISH-----ITPTQGFNIKSVQSE----------------GFKLNVWDIGGQRKIRPYWRNYFDNTDI 108 (162)
Q Consensus 50 GKStli~~l~~~~~~~-----~~~~~~~~~~~~~~~----------------~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 108 (162)
+||||+.++.+..... .....|.++...... --.+.+|||||+..+.......+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 4999999998876432 223334333222210 0138999999999998887777888999
Q ss_pred EEEEEECCC---hhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 109 LIYVIDSAD---VKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 109 vl~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
+++|+|+++ +.++..+. .... .++|+++|+||+|+..
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~-----~lk~---~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN-----ILRQ---YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH-----HHHH---cCCCEEEEEECCCCcc
Confidence 999999986 33333322 2222 2679999999999964
No 304
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.00 E-value=2.7e-09 Score=73.13 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=43.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeC-CeEEEEEeCCCC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSE-GFKLNVWDIGGQ 92 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~ 92 (162)
....+++++|.+|+|||||+|+|.+.......+++|.+....... +..+.+.||||.
T Consensus 100 ~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred ccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence 356889999999999999999999887666677777554432222 235789999993
No 305
>KOG0458|consensus
Probab=99.00 E-value=1.9e-09 Score=85.69 Aligned_cols=118 Identities=25% Similarity=0.340 Sum_probs=78.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCC--C---------------C-------------ccCCccee----EEEEEEe
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASED--I---------------S-------------HITPTQGF----NIKSVQS 79 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~--~---------------~-------------~~~~~~~~----~~~~~~~ 79 (162)
.....+.++++|...+|||||+.++++.- . + ......|+ ....++-
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 44457999999999999999999886431 0 0 01111222 2223444
Q ss_pred CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHH------HHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 80 EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEE------SGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 80 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
....++|.|.||+.+|..-.......+|+.++|+|++.. .|+. -.+....+++. +.-..++|++||+|+.+
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~--Lgi~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRS--LGISQLIVAINKMDLVS 329 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHH--cCcceEEEEeecccccC
Confidence 568899999999999988777777889999999998742 2222 01111122222 23568999999999976
Q ss_pred C
Q psy689 154 A 154 (162)
Q Consensus 154 ~ 154 (162)
=
T Consensus 330 W 330 (603)
T KOG0458|consen 330 W 330 (603)
T ss_pred c
Confidence 3
No 306
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.99 E-value=2e-09 Score=80.05 Aligned_cols=75 Identities=23% Similarity=0.236 Sum_probs=50.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCc---cCCcceeEEEEEEeCC-----------------eEEEEEeCCCCCCCh----
Q psy689 41 ILLLGLDNAGKTTILKTLASEDISH---ITPTQGFNIKSVQSEG-----------------FKLNVWDIGGQRKIR---- 96 (162)
Q Consensus 41 v~viG~~~sGKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~l~D~~G~~~~~---- 96 (162)
++++|.|+||||||+|+|++..... ...|.......+...+ ..+.++|+||...-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5789999999999999999887311 1223333333333332 258999999954321
Q ss_pred h---hHHhhcccCCEEEEEEEC
Q psy689 97 P---YWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 97 ~---~~~~~~~~~d~vl~v~d~ 115 (162)
. .....++.+|++++|+|+
T Consensus 81 glg~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeC
Confidence 1 123346789999999986
No 307
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.97 E-value=3.6e-09 Score=81.25 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=52.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC--Cc-cCCcceeEEEEEEeCC-----------------eEEEEEeCCCCCCChh-
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI--SH-ITPTQGFNIKSVQSEG-----------------FKLNVWDIGGQRKIRP- 97 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~--~~-~~~~~~~~~~~~~~~~-----------------~~~~l~D~~G~~~~~~- 97 (162)
++|+++|.|+||||||+|+|.+... .. ..+|.......+...+ .++.+.|+||...-..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 6899999999999999999998772 11 1222233333333322 3589999999543211
Q ss_pred ------hHHhhcccCCEEEEEEECC
Q psy689 98 ------YWRNYFDNTDILIYVIDSA 116 (162)
Q Consensus 98 ------~~~~~~~~~d~vl~v~d~~ 116 (162)
.....++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1233568899999999973
No 308
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.94 E-value=6.2e-09 Score=71.21 Aligned_cols=59 Identities=22% Similarity=0.368 Sum_probs=44.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEE-EEeCCeEEEEEeCCCC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKS-VQSEGFKLNVWDIGGQ 92 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~ 92 (162)
......+++++|.+++||||++|++.+.....+.++.+.+... +...+..+.+|||||.
T Consensus 97 ~~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 97 IDGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred hcCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 3445678999999999999999999987766667777765432 2223347899999993
No 309
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.93 E-value=4.3e-08 Score=77.88 Aligned_cols=87 Identities=21% Similarity=0.318 Sum_probs=60.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEE--EEEeC----CeEEEEEeCCCCCCChhhHHhhcccC-
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIK--SVQSE----GFKLNVWDIGGQRKIRPYWRNYFDNT- 106 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~--~~~~~----~~~~~l~D~~G~~~~~~~~~~~~~~~- 106 (162)
.....-.|+|+|..++|||||+.+|.+.+. ..++.+..+. .+..+ ..++.+|.+.|...+..+....+...
T Consensus 21 ~~~~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~ 98 (472)
T PF05783_consen 21 KLPSEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPEN 98 (472)
T ss_pred cCCCCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccc
Confidence 445567999999999999999999876542 3344443333 33222 25789999998777777765555432
Q ss_pred ---CEEEEEEECCChhhHH
Q psy689 107 ---DILIYVIDSADVKRFE 122 (162)
Q Consensus 107 ---d~vl~v~d~~~~~~~~ 122 (162)
-+|++|+|.+.|..+-
T Consensus 99 l~~t~vvIvlDlS~PW~~~ 117 (472)
T PF05783_consen 99 LPNTLVVIVLDLSKPWNIM 117 (472)
T ss_pred ccceEEEEEecCCChHHHH
Confidence 4689999998865443
No 310
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.93 E-value=2.8e-09 Score=74.22 Aligned_cols=58 Identities=17% Similarity=0.315 Sum_probs=44.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEe-CCeEEEEEeCCCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQS-EGFKLNVWDIGGQ 92 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~ 92 (162)
....++++++|.+|+|||||+|++.+......++.+|.+...-.. -+..+.++||||.
T Consensus 114 ~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 114 IKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeCCCEEEEECcCC
Confidence 455689999999999999999999998876777777766532221 1346899999993
No 311
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.93 E-value=1.8e-08 Score=76.52 Aligned_cols=117 Identities=22% Similarity=0.353 Sum_probs=75.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCc-----------cCCcceeEEEEEEe--CC--eEEEEEeCCCCCCCh--
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDISH-----------ITPTQGFNIKSVQS--EG--FKLNVWDIGGQRKIR-- 96 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~~~-----------~~~~~~~~~~~~~~--~~--~~~~l~D~~G~~~~~-- 96 (162)
...-.++|.++|++|+|||||+|.|++..... ..++..+....... ++ .++.+.||||-.++-
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN 98 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN 98 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence 34668999999999999999999998874211 22333333333322 33 688899999944421
Q ss_pred -hhH-----------Hhhc--------------ccCCEEEEEEECCChhhHHHH-HHHHHHHhhCCCCCCCcEEEEEeCC
Q psy689 97 -PYW-----------RNYF--------------DNTDILIYVIDSADVKRFEES-GFELHELLSDEKLTGVPLLVYANKQ 149 (162)
Q Consensus 97 -~~~-----------~~~~--------------~~~d~vl~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~ 149 (162)
..| ..|+ .++|++|+++.++... +... ...++.+- ..+.+|.|+-|+
T Consensus 99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls-----~~vNlIPVI~Ka 172 (373)
T COG5019 99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLS-----KRVNLIPVIAKA 172 (373)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHh-----cccCeeeeeecc
Confidence 111 1111 2359999999987632 3332 33444443 368999999999
Q ss_pred CCCCCCC
Q psy689 150 DLLGAAP 156 (162)
Q Consensus 150 Dl~~~~~ 156 (162)
|.....+
T Consensus 173 D~lT~~E 179 (373)
T COG5019 173 DTLTDDE 179 (373)
T ss_pred ccCCHHH
Confidence 9876543
No 312
>KOG2655|consensus
Probab=98.89 E-value=1.8e-08 Score=76.78 Aligned_cols=117 Identities=21% Similarity=0.315 Sum_probs=73.6
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCc----------cCCcceeEEEEEEe--CC--eEEEEEeCCCCCCCh--
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASEDISH----------ITPTQGFNIKSVQS--EG--FKLNVWDIGGQRKIR-- 96 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~----------~~~~~~~~~~~~~~--~~--~~~~l~D~~G~~~~~-- 96 (162)
....-.+++.++|++|.|||||+|.|+...... ...+..+....... ++ .++++.||||..+.-
T Consensus 16 ~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdn 95 (366)
T KOG2655|consen 16 VKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDN 95 (366)
T ss_pred HhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccc
Confidence 344557999999999999999999998774211 11233333333333 22 678899999944421
Q ss_pred -----hh-------HHhh-----------cc--cCCEEEEEEECCChhhHHHHH-HHHHHHhhCCCCCCCcEEEEEeCCC
Q psy689 97 -----PY-------WRNY-----------FD--NTDILIYVIDSADVKRFEESG-FELHELLSDEKLTGVPLLVYANKQD 150 (162)
Q Consensus 97 -----~~-------~~~~-----------~~--~~d~vl~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D 150 (162)
.. .+.| +. ++|++|+++.++.. .+.... ..+..+- ..+++|.|+-|.|
T Consensus 96 s~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~-----~~vNiIPVI~KaD 169 (366)
T KOG2655|consen 96 SNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS-----KKVNLIPVIAKAD 169 (366)
T ss_pred cccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh-----ccccccceeeccc
Confidence 11 1111 12 56999999998763 223322 2333332 4789999999999
Q ss_pred CCCCC
Q psy689 151 LLGAA 155 (162)
Q Consensus 151 l~~~~ 155 (162)
.....
T Consensus 170 ~lT~~ 174 (366)
T KOG2655|consen 170 TLTKD 174 (366)
T ss_pred cCCHH
Confidence 87654
No 313
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.88 E-value=5.8e-09 Score=70.29 Aligned_cols=53 Identities=21% Similarity=0.375 Sum_probs=38.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeE--EEEEEeCCeEEEEEeCCCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFN--IKSVQSEGFKLNVWDIGGQ 92 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~D~~G~ 92 (162)
-+++++|.+|+|||||+|++.+......+...+.+ ...+..++ .+.+|||||.
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 38999999999999999999988754444444422 22333333 6799999995
No 314
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=8.4e-09 Score=82.26 Aligned_cols=116 Identities=15% Similarity=0.204 Sum_probs=80.5
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 32 RSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 32 ~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
....++++-++|+||+|.|||||+..|.......+-..+......+.....++++.++| .+..++.. ...-+|.||+
T Consensus 63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp--~Dl~~miD-vaKIaDLVlL 139 (1077)
T COG5192 63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECP--SDLHQMID-VAKIADLVLL 139 (1077)
T ss_pred cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeCh--HHHHHHHh-HHHhhheeEE
Confidence 34678889999999999999999998865442111111111222344566889999999 44555543 4467899999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++|.+- .|+.....+..++..+.. ..|+-|.+..|+...
T Consensus 140 lIdgnf--GfEMETmEFLnil~~HGm--PrvlgV~ThlDlfk~ 178 (1077)
T COG5192 140 LIDGNF--GFEMETMEFLNILISHGM--PRVLGVVTHLDLFKN 178 (1077)
T ss_pred Eecccc--CceehHHHHHHHHhhcCC--CceEEEEeecccccC
Confidence 999875 455555666777776643 468899999998754
No 315
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.86 E-value=1.6e-08 Score=75.97 Aligned_cols=58 Identities=24% Similarity=0.406 Sum_probs=44.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEe-CCeEEEEEeCCCCC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQS-EGFKLNVWDIGGQR 93 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~ 93 (162)
...++++++|.+||||||++|+|.+.......+.+|.+...... -+..+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGKGLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCCcEEEEECCCcC
Confidence 46789999999999999999999998866667777765443222 23468899999964
No 316
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.86 E-value=3.9e-08 Score=75.03 Aligned_cols=118 Identities=15% Similarity=0.198 Sum_probs=71.8
Q ss_pred HHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC-----------CCccCC------------------cceeEEE
Q psy689 25 LAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED-----------ISHITP------------------TQGFNIK 75 (162)
Q Consensus 25 ~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~-----------~~~~~~------------------~~~~~~~ 75 (162)
..+++.+.+...+...|.+.|++|||||||++.+...- ....++ .++....
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r 122 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIR 122 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEE
Confidence 34555555556778999999999999999998763211 011111 0111111
Q ss_pred E--------------------EEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCC
Q psy689 76 S--------------------VQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDE 135 (162)
Q Consensus 76 ~--------------------~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~ 135 (162)
. +...+..+.+.||+|....... ....+|.++++.+....+..+.... .++.
T Consensus 123 ~~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-- 194 (332)
T PRK09435 123 PSPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-- 194 (332)
T ss_pred ecCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh--
Confidence 1 0112467899999997744332 4567999999988655555544332 1221
Q ss_pred CCCCCcEEEEEeCCCCCCC
Q psy689 136 KLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 136 ~~~~~~iivv~nK~Dl~~~ 154 (162)
..-++|+||+|+...
T Consensus 195 ----~aDIiVVNKaDl~~~ 209 (332)
T PRK09435 195 ----LADLIVINKADGDNK 209 (332)
T ss_pred ----hhheEEeehhcccch
Confidence 123899999998754
No 317
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.85 E-value=3.9e-08 Score=74.41 Aligned_cols=116 Identities=19% Similarity=0.166 Sum_probs=78.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCC----------cc--------------------------CCcceeEEEEEEe
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDIS----------HI--------------------------TPTQGFNIKSVQS 79 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~----------~~--------------------------~~~~~~~~~~~~~ 79 (162)
...++++-.|...=||||||-+|++.... .. .-|+.+.+..+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 34689999999999999999999765310 00 1122233444555
Q ss_pred CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHH-HHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 80 EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESG-FELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 80 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
...++.+-||||++.|.+-...-...||++++++|+...-.-+.-+ ..+...+ .=..+++..||+||.+-.+
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL-----GIrhvvvAVNKmDLvdy~e 156 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL-----GIRHVVVAVNKMDLVDYSE 156 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh-----CCcEEEEEEeeecccccCH
Confidence 6788999999999998876655667789999999986432211111 1222222 2357999999999987653
No 318
>KOG0461|consensus
Probab=98.84 E-value=1.7e-08 Score=76.22 Aligned_cols=115 Identities=24% Similarity=0.324 Sum_probs=74.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC------CCccCCcceeEEE----EEEe---------CCeEEEEEeCCCCCCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED------ISHITPTQGFNIK----SVQS---------EGFKLNVWDIGGQRKI 95 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~------~~~~~~~~~~~~~----~~~~---------~~~~~~l~D~~G~~~~ 95 (162)
.+..+++.++|.-.||||||.+++..-. ....+.+.|++.. .+.. ....+.+.|+||+...
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 4556999999999999999999986433 1112223333321 1111 2367899999999887
Q ss_pred hhhHHhhcccCCEEEEEEECCChhhHHHHHH-HHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGF-ELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 96 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
-+......+-.|..++|+|+...-.-+.+.- .+-++. -...+||+||.|+..+.
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------c~klvvvinkid~lpE~ 138 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------CKKLVVVINKIDVLPEN 138 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------ccceEEEEeccccccch
Confidence 7766666677899999999875332222222 122222 34678888999887764
No 319
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.83 E-value=5.6e-08 Score=73.51 Aligned_cols=120 Identities=20% Similarity=0.263 Sum_probs=73.6
Q ss_pred HHHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC-----------CCccCCc------------------ceeEE
Q psy689 24 LLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED-----------ISHITPT------------------QGFNI 74 (162)
Q Consensus 24 ~~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~-----------~~~~~~~------------------~~~~~ 74 (162)
...+++++.........++++|++|+|||||+..+.... ....++. .+...
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFI 99 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCcee
Confidence 455677777777888999999999999999998865321 0000100 11111
Q ss_pred EEEE--------------------eCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhC
Q psy689 75 KSVQ--------------------SEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSD 134 (162)
Q Consensus 75 ~~~~--------------------~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~ 134 (162)
..+. ..++.+.+.||+|..... ...+..+|.++++......+.+.... ..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~~~---~~l--- 170 (300)
T TIGR00750 100 RSMPTRGHLGGLSQATRELILLLDAAGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQGIK---AGL--- 170 (300)
T ss_pred eecCccccccchhHHHHHHHHHHHhCCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHHHH---HHH---
Confidence 1111 124678899999854222 23466788888886655433333322 222
Q ss_pred CCCCCCcEEEEEeCCCCCCCC
Q psy689 135 EKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 135 ~~~~~~~iivv~nK~Dl~~~~ 155 (162)
...|.++|+||+|+.+..
T Consensus 171 ---~~~~~ivv~NK~Dl~~~~ 188 (300)
T TIGR00750 171 ---MEIADIYVVNKADGEGAT 188 (300)
T ss_pred ---hhhccEEEEEcccccchh
Confidence 256789999999998654
No 320
>KOG1486|consensus
Probab=98.83 E-value=4.9e-08 Score=70.87 Aligned_cols=85 Identities=19% Similarity=0.260 Sum_probs=61.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC---CccCCcceeEEEEEEeCCeEEEEEeCCCCCCCh-------hhHHhhcccCC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDI---SHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR-------PYWRNYFDNTD 107 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d 107 (162)
-.+|+++|-|++|||||+..+...+. ....+|..+-...+..++.++++.|+||.-... +......+.+|
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaD 141 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTAD 141 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeeccc
Confidence 37899999999999999999887652 222334444455778899999999999943322 22234567899
Q ss_pred EEEEEEECCChhhHH
Q psy689 108 ILIYVIDSADVKRFE 122 (162)
Q Consensus 108 ~vl~v~d~~~~~~~~ 122 (162)
.+++|.|++..+...
T Consensus 142 lilMvLDatk~e~qr 156 (364)
T KOG1486|consen 142 LILMVLDATKSEDQR 156 (364)
T ss_pred EEEEEecCCcchhHH
Confidence 999999998755433
No 321
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.80 E-value=2.4e-08 Score=74.64 Aligned_cols=56 Identities=21% Similarity=0.468 Sum_probs=42.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEE--EEeCCeEEEEEeCCCC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKS--VQSEGFKLNVWDIGGQ 92 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~D~~G~ 92 (162)
...++++++|.+|+|||||+|+|.+.....+.+.+|.+... +.. +..+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL-SDGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe-CCCEEEEECCCc
Confidence 45789999999999999999999987755556666654332 222 236799999996
No 322
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.80 E-value=9.7e-09 Score=72.53 Aligned_cols=55 Identities=22% Similarity=0.383 Sum_probs=38.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCC--------CccCCcceeEEEE--EEeCCeEEEEEeCCCC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDI--------SHITPTQGFNIKS--VQSEGFKLNVWDIGGQ 92 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~--------~~~~~~~~~~~~~--~~~~~~~~~l~D~~G~ 92 (162)
++.+++++|.+|+|||||+|+|.+... ...++.+|.+... +.... .+.++||||.
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcCC
Confidence 567899999999999999999987642 1233444544333 22232 6799999993
No 323
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.77 E-value=2.4e-08 Score=69.47 Aligned_cols=57 Identities=18% Similarity=0.388 Sum_probs=41.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEE--EEeCCeEEEEEeCCCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKS--VQSEGFKLNVWDIGGQ 92 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~D~~G~ 92 (162)
.+..++++++|.+|+||||++|++.+.......+..+.+... +... ..+.+|||||.
T Consensus 112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 345689999999999999999999987754445544443322 2222 56889999995
No 324
>KOG3887|consensus
Probab=98.77 E-value=2e-08 Score=72.49 Aligned_cols=118 Identities=25% Similarity=0.360 Sum_probs=76.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC----CCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhh---HHhhcccCCEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASED----ISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPY---WRNYFDNTDILI 110 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~---~~~~~~~~d~vl 110 (162)
+.+|+++|-.-|||||+-+-.+..- .-...+|...+..++...=..+.+||.|||.++-.- ....++++.+.+
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 4569999999999999876554432 112223333333334333368899999998775432 356789999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhh--CCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLS--DEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
+|+|+.+. +..+...+..... ..-.+++.+-|+.+|.|.+.++..
T Consensus 107 fvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~k 153 (347)
T KOG3887|consen 107 FVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFK 153 (347)
T ss_pred EEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhh
Confidence 99998763 2222222222222 223478999999999999876543
No 325
>KOG1144|consensus
Probab=98.75 E-value=1.3e-08 Score=83.06 Aligned_cols=113 Identities=22% Similarity=0.228 Sum_probs=76.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCC-----ccCCcceeEEEEEEe----------------CCeEEEEEeCCCCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDIS-----HITPTQGFNIKSVQS----------------EGFKLNVWDIGGQR 93 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~-----~~~~~~~~~~~~~~~----------------~~~~~~l~D~~G~~ 93 (162)
.-+..-|+|+|...+|||-|+..+.+.... .....+|.++..... .---+.++||||++
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 445677899999999999999999876532 222333333322211 01236788999999
Q ss_pred CChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 94 ~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
.|..++.....-||.+|+|+|+-..-.-+.+.. + ..++ ..+.|+||.+||+|.+
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiES-i-~lLR---~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIES-I-NLLR---MRKTPFIVALNKIDRL 605 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhccCCcchhHH-H-HHHH---hcCCCeEEeehhhhhh
Confidence 999999988889999999999864211111111 1 1122 2589999999999975
No 326
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.71 E-value=3.3e-08 Score=75.38 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=47.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeC-CeEEEEEeCCCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSE-GFKLNVWDIGGQ 92 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~ 92 (162)
.....+++++|-|+|||||+||+|.+.....+++.+|.+...-+.. +..+.++||||.
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGi 187 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGI 187 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCCc
Confidence 3556889999999999999999999999888888888776544432 345899999994
No 327
>KOG1954|consensus
Probab=98.70 E-value=2.2e-07 Score=70.88 Aligned_cols=116 Identities=21% Similarity=0.239 Sum_probs=73.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCc----cCCcceeEEEEEEeC--------------------------------
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDISH----ITPTQGFNIKSVQSE-------------------------------- 80 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~~~----~~~~~~~~~~~~~~~-------------------------------- 80 (162)
.+.-|+++|+=+.|||||++.|+..++.- ..||+......+..+
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 35679999999999999999998776321 123333222211111
Q ss_pred ------C---eEEEEEeCCCCC-----------CChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCC
Q psy689 81 ------G---FKLNVWDIGGQR-----------KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGV 140 (162)
Q Consensus 81 ------~---~~~~l~D~~G~~-----------~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (162)
+ -+++++||||.- +|....+.+..++|.++++||+...+-- ..+.+++.......-
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIs----dEf~~vi~aLkG~Ed 212 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDIS----DEFKRVIDALKGHED 212 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhcccc----HHHHHHHHHhhCCcc
Confidence 0 258999999932 2445567788899999999997643221 222222222222356
Q ss_pred cEEEEEeCCCCCCCCC
Q psy689 141 PLLVYANKQDLLGAAP 156 (162)
Q Consensus 141 ~iivv~nK~Dl~~~~~ 156 (162)
.+=||+||.|..++.+
T Consensus 213 kiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 213 KIRVVLNKADQVDTQQ 228 (532)
T ss_pred eeEEEeccccccCHHH
Confidence 7889999999887653
No 328
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.70 E-value=1.4e-08 Score=65.90 Aligned_cols=99 Identities=23% Similarity=0.274 Sum_probs=64.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhh----HHhhcccCCEEEEEEEC
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPY----WRNYFDNTDILIYVIDS 115 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~----~~~~~~~~d~vl~v~d~ 115 (162)
|+.++|+.|+|||||.+.+.+...-. ..|- .+++.+. -.+||||.--..+. .....+++|++++|-.+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly-kKTQ-----Ave~~d~--~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a 74 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY-KKTQ-----AVEFNDK--GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA 74 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh-cccc-----eeeccCc--cccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence 68999999999999999998876322 1111 1222110 13699994333333 23456889999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 116 ADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+++.+.-.. -+..+ ...|+|-|.+|.|+.++
T Consensus 75 nd~~s~f~p--~f~~~------~~k~vIgvVTK~DLaed 105 (148)
T COG4917 75 NDPESRFPP--GFLDI------GVKKVIGVVTKADLAED 105 (148)
T ss_pred cCccccCCc--ccccc------cccceEEEEecccccch
Confidence 987652221 11222 24569999999999863
No 329
>KOG1547|consensus
Probab=98.70 E-value=6.3e-08 Score=69.84 Aligned_cols=121 Identities=21% Similarity=0.315 Sum_probs=73.0
Q ss_pred hhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCc--cC-----CcceeEE-----EEEEeCC--eEEEEEeCCCCCCC
Q psy689 30 KLRSSPEKELRILLLGLDNAGKTTILKTLASEDISH--IT-----PTQGFNI-----KSVQSEG--FKLNVWDIGGQRKI 95 (162)
Q Consensus 30 ~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~--~~-----~~~~~~~-----~~~~~~~--~~~~l~D~~G~~~~ 95 (162)
...-...=.++|.++|.+|.|||||+|.++..+... .. |.+.... ..+..++ .++++.||||..++
T Consensus 38 ~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDq 117 (336)
T KOG1547|consen 38 KKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQ 117 (336)
T ss_pred HHHHhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccc
Confidence 333445557999999999999999999998776222 11 1111111 1233333 67889999994442
Q ss_pred h---hhH-----------Hhhc--------------ccCCEEEEEEECCChhhHHHHH-HHHHHHhhCCCCCCCcEEEEE
Q psy689 96 R---PYW-----------RNYF--------------DNTDILIYVIDSADVKRFEESG-FELHELLSDEKLTGVPLLVYA 146 (162)
Q Consensus 96 ~---~~~-----------~~~~--------------~~~d~vl~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~ 146 (162)
- .+| ..|+ .+.|++++++..+.. ++..+. ..+++.- .-+.|+.|+
T Consensus 118 InN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt-----~vvNvvPVI 191 (336)
T KOG1547|consen 118 INNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLT-----EVVNVVPVI 191 (336)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHh-----hhheeeeeE
Confidence 1 122 2222 135899999998863 333332 2333332 256889999
Q ss_pred eCCCCCCCCC
Q psy689 147 NKQDLLGAAP 156 (162)
Q Consensus 147 nK~Dl~~~~~ 156 (162)
-|.|.+.-++
T Consensus 192 akaDtlTleE 201 (336)
T KOG1547|consen 192 AKADTLTLEE 201 (336)
T ss_pred eecccccHHH
Confidence 9999765443
No 330
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.69 E-value=4.2e-08 Score=71.69 Aligned_cols=118 Identities=21% Similarity=0.275 Sum_probs=67.1
Q ss_pred hHHHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC-----------CCccCCc------------------ceeE
Q psy689 23 GLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED-----------ISHITPT------------------QGFN 73 (162)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~-----------~~~~~~~------------------~~~~ 73 (162)
....+++.+.+...+...|.+.|+||+|||||++.|.... ...++|. .+..
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vf 93 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVF 93 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEE
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEE
Confidence 3445566666666778999999999999999999874221 1122221 2223
Q ss_pred EEEEEe--------------------CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhh
Q psy689 74 IKSVQS--------------------EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLS 133 (162)
Q Consensus 74 ~~~~~~--------------------~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~ 133 (162)
...+-. .++.+.+.+|.|-....- ....-+|.+++|.-+...+..+.+..-+.++
T Consensus 94 IRS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi-- 168 (266)
T PF03308_consen 94 IRSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEI-- 168 (266)
T ss_dssp EEEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH--
T ss_pred EeecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhh--
Confidence 332221 146678888887543332 2345689999999877665555544433333
Q ss_pred CCCCCCCcEEEEEeCCCCC
Q psy689 134 DEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 134 ~~~~~~~~iivv~nK~Dl~ 152 (162)
+=++|.||+|+.
T Consensus 169 -------aDi~vVNKaD~~ 180 (266)
T PF03308_consen 169 -------ADIFVVNKADRP 180 (266)
T ss_dssp --------SEEEEE--SHH
T ss_pred -------ccEEEEeCCChH
Confidence 227888888854
No 331
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.66 E-value=1.5e-06 Score=63.07 Aligned_cols=83 Identities=17% Similarity=0.150 Sum_probs=54.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcC--CCC----ccCCcceeEEEEEEe---CCeEEEEEeCCCCCCChh------hHH
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASE--DIS----HITPTQGFNIKSVQS---EGFKLNVWDIGGQRKIRP------YWR 100 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~--~~~----~~~~~~~~~~~~~~~---~~~~~~l~D~~G~~~~~~------~~~ 100 (162)
.+-.-|.|+|++++|||||+|+|++. .+. ....|.|+-...... .+..+.++||+|..+... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34556889999999999999999988 322 123344444333333 357899999999665432 122
Q ss_pred hhccc--CCEEEEEEECCCh
Q psy689 101 NYFDN--TDILIYVIDSADV 118 (162)
Q Consensus 101 ~~~~~--~d~vl~v~d~~~~ 118 (162)
..+.. ++++++..+.+..
T Consensus 85 ~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 85 FALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHhCEEEEeccCccc
Confidence 23333 7888888887643
No 332
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=5e-08 Score=72.27 Aligned_cols=119 Identities=15% Similarity=0.132 Sum_probs=75.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCC----------CCcc-----CCcceeEE----EEEEeCCeEEEEEeCCCCCC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASED----------ISHI-----TPTQGFNI----KSVQSEGFKLNVWDIGGQRK 94 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~----------~~~~-----~~~~~~~~----~~~~~~~~~~~l~D~~G~~~ 94 (162)
...+.++|..+|.-..|||||...+..-- +... ....|++. ..+...+..+...|+||+.+
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence 34567999999999999999987764211 1111 11222322 23455678888999999999
Q ss_pred ChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 95 IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 95 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
|-.-......+.|+.|+|+++++..- .+....+.-..+. .-..+++++||+|+.++..
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpm-PqTrEHiLlarqv---Gvp~ivvflnK~Dmvdd~e 145 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV---GVPYIVVFLNKVDMVDDEE 145 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCC-Ccchhhhhhhhhc---CCcEEEEEEecccccCcHH
Confidence 87654445566899999999876321 1112211111222 2346889999999998654
No 333
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.65 E-value=3.7e-07 Score=67.85 Aligned_cols=118 Identities=21% Similarity=0.297 Sum_probs=76.9
Q ss_pred HHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC-----------CCccCCcce------------------eEEE
Q psy689 25 LAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED-----------ISHITPTQG------------------FNIK 75 (162)
Q Consensus 25 ~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~-----------~~~~~~~~~------------------~~~~ 75 (162)
.+++..+.+...+...|.|.|.||+|||||+..|.... ...++|-.| ....
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiR 117 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIR 117 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEe
Confidence 46677778888899999999999999999998885321 122222222 1222
Q ss_pred EEEe--------------------CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCC
Q psy689 76 SVQS--------------------EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDE 135 (162)
Q Consensus 76 ~~~~--------------------~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~ 135 (162)
.+.. .++.+.|++|.|-..... .....+|.++++.=..-.+..+.+..-+.++
T Consensus 118 s~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi---- 190 (323)
T COG1703 118 SSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEI---- 190 (323)
T ss_pred ecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhh----
Confidence 1111 135678888888654443 2345689999988877666666665544443
Q ss_pred CCCCCcEEEEEeCCCCCCC
Q psy689 136 KLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 136 ~~~~~~iivv~nK~Dl~~~ 154 (162)
.=++|.||.|..+.
T Consensus 191 -----aDi~vINKaD~~~A 204 (323)
T COG1703 191 -----ADIIVINKADRKGA 204 (323)
T ss_pred -----hheeeEeccChhhH
Confidence 23899999996554
No 334
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.65 E-value=7.5e-08 Score=65.87 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=39.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEE--EEEeCCeEEEEEeCCCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIK--SVQSEGFKLNVWDIGGQ 92 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~D~~G~ 92 (162)
.....+++++|.+|+||||++|.+.+......++..+.+.. .+.. +..+.+.||||.
T Consensus 97 ~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtPG~ 155 (155)
T cd01849 97 LKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL-DNKIKLLDTPGI 155 (155)
T ss_pred cccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe-cCCEEEEECCCC
Confidence 34578899999999999999999998764333333332222 2222 246899999983
No 335
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2.4e-07 Score=70.75 Aligned_cols=79 Identities=25% Similarity=0.394 Sum_probs=54.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC-------CCccCCcceeEEEE----------EE----eCCeEEEEEeCCCCCC--
Q psy689 38 ELRILLLGLDNAGKTTILKTLASED-------ISHITPTQGFNIKS----------VQ----SEGFKLNVWDIGGQRK-- 94 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~-------~~~~~~~~~~~~~~----------~~----~~~~~~~l~D~~G~~~-- 94 (162)
.+++.|+|-|+||||||+|.++... +.+..|..|..... +. .....++++|.+|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 4789999999999999999998776 33445555533221 11 1125788999998322
Q ss_pred -----ChhhHHhhcccCCEEEEEEECC
Q psy689 95 -----IRPYWRNYFDNTDILIYVIDSA 116 (162)
Q Consensus 95 -----~~~~~~~~~~~~d~vl~v~d~~ 116 (162)
........++++|+++.|+|+.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2223345679999999999975
No 336
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.58 E-value=5.1e-07 Score=69.63 Aligned_cols=78 Identities=21% Similarity=0.162 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-C--cc-CCcceeEEEEEEeCC-----------------eEEEEEeCCCCCC---
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-S--HI-TPTQGFNIKSVQSEG-----------------FKLNVWDIGGQRK--- 94 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-~--~~-~~~~~~~~~~~~~~~-----------------~~~~l~D~~G~~~--- 94 (162)
.+++++|.|++|||||++.+.+... . .+ ..|...+...+...+ ..+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999988764 2 11 122333333333322 4688999999543
Q ss_pred ----ChhhHHhhcccCCEEEEEEECC
Q psy689 95 ----IRPYWRNYFDNTDILIYVIDSA 116 (162)
Q Consensus 95 ----~~~~~~~~~~~~d~vl~v~d~~ 116 (162)
........++.+|++++|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2223445689999999999974
No 337
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.56 E-value=5.4e-07 Score=61.94 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=36.4
Q ss_pred eEEEEEeCCCCCCChhhHHhh--------cccCCEEEEEEECCChhhHH-HHHHHHHHHhhCCCCCCCcEEEEEeCCCC
Q psy689 82 FKLNVWDIGGQRKIRPYWRNY--------FDNTDILIYVIDSADVKRFE-ESGFELHELLSDEKLTGVPLLVYANKQDL 151 (162)
Q Consensus 82 ~~~~l~D~~G~~~~~~~~~~~--------~~~~d~vl~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 151 (162)
..+.+.|++|..+........ .-..+.++.++|+.+....- ....+..++ .. .=+||+||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi-~~------ad~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQI-AF------ADRILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHH-HH------CCEEEEecccC
Confidence 455688999976654444322 22368899999986533211 112222232 22 22779999996
No 338
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.53 E-value=5e-07 Score=79.32 Aligned_cols=112 Identities=19% Similarity=0.216 Sum_probs=63.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCcc-----CC--cceeEEEEEEeCCeEEEEEeCCCCC--------CChhhHHhhc--
Q psy689 41 ILLLGLDNAGKTTILKTLASEDISHI-----TP--TQGFNIKSVQSEGFKLNVWDIGGQR--------KIRPYWRNYF-- 103 (162)
Q Consensus 41 v~viG~~~sGKStli~~l~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~~~~~~-- 103 (162)
.+|+|++|+||||+++.. +-.+.-. .. ..+.+...-.+-.-+-.++||+|.- .....|..++
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~ 192 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGL 192 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHHH
Confidence 689999999999999885 2222111 01 1111111111112244588999922 1223344433
Q ss_pred -------ccCCEEEEEEECCCh-----hhHH----HHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 104 -------DNTDILIYVIDSADV-----KRFE----ESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 104 -------~~~d~vl~v~d~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+..++||+++|+.+. .... .+...+.++.+... -..||.|++||+|+...
T Consensus 193 L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 193 LRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-ARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecchhhcC
Confidence 347999999997542 2111 23334444444433 47999999999998843
No 339
>KOG0467|consensus
Probab=98.50 E-value=7.6e-07 Score=73.13 Aligned_cols=114 Identities=19% Similarity=0.209 Sum_probs=79.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCC---------------CCccCCcceeEEEE----EEeCCeEEEEEeCCCCCC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASED---------------ISHITPTQGFNIKS----VQSEGFKLNVWDIGGQRK 94 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~---------------~~~~~~~~~~~~~~----~~~~~~~~~l~D~~G~~~ 94 (162)
..+..-+++++..-..|||||+..|.... ......+.|++.+. ....++.++++|+||+-+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 44556789999999999999999986443 11223345555442 223678999999999999
Q ss_pred ChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 95 IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 95 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
|........+=+|++++++|+-..-.-+. ...+++... .+...++|+||+|..
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt-~~vlrq~~~----~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQT-YAVLRQAWI----EGLKPILVINKIDRL 137 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhH-HHHHHHHHH----ccCceEEEEehhhhH
Confidence 99988888888999999999754322111 111222111 366889999999954
No 340
>PRK12288 GTPase RsgA; Reviewed
Probab=98.50 E-value=2.5e-07 Score=71.18 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy689 40 RILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~ 62 (162)
.++++|.+|||||||+|+|.+..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc
Confidence 37899999999999999999876
No 341
>KOG2486|consensus
Probab=98.47 E-value=7.6e-07 Score=65.53 Aligned_cols=113 Identities=16% Similarity=0.205 Sum_probs=66.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC--CCccCCcceeEEE-EEEeCCeEEEEEeCCC----------CCCChhhHHhh
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED--ISHITPTQGFNIK-SVQSEGFKLNVWDIGG----------QRKIRPYWRNY 102 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~--~~~~~~~~~~~~~-~~~~~~~~~~l~D~~G----------~~~~~~~~~~~ 102 (162)
..+..++++|.+++|||||+|.+.... ....++..|.+.. .-..-+.+..+.|.|| -.++..+...|
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence 456889999999999999999988766 2222334443322 2222346778889999 11223333333
Q ss_pred cccC---CEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 103 FDNT---DILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 103 ~~~~---d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
+..- -.+++++|++.+ ++.......++..+ .++|..+|+||||..-
T Consensus 214 ~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 214 LLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQK 262 (320)
T ss_pred HHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhh
Confidence 3222 345666776542 22222222222222 5899999999999753
No 342
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.46 E-value=8.8e-08 Score=65.70 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~ 62 (162)
-.++++|++|||||||+|.|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 378899999999999999999875
No 343
>KOG1491|consensus
Probab=98.45 E-value=1.2e-06 Score=66.14 Aligned_cols=82 Identities=24% Similarity=0.267 Sum_probs=54.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCC---ccCCcceeEEEEEEeC-----------------CeEEEEEeCCCCCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDIS---HITPTQGFNIKSVQSE-----------------GFKLNVWDIGGQRK 94 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~~l~D~~G~~~ 94 (162)
..+.+++.|+|.|+||||||+|.|...... ....|+..+...+... ...++++|++|.-.
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 456789999999999999999999877622 1112333332232221 25689999998433
Q ss_pred C-------hhhHHhhcccCCEEEEEEECC
Q psy689 95 I-------RPYWRNYFDNTDILIYVIDSA 116 (162)
Q Consensus 95 ~-------~~~~~~~~~~~d~vl~v~d~~ 116 (162)
- ..-....++.+|+++-|+++.
T Consensus 97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred CcccCcCchHHHHHhhhhccceeEEEEec
Confidence 2 112234578899999999753
No 344
>PRK12289 GTPase RsgA; Reviewed
Probab=98.45 E-value=4.1e-07 Score=70.09 Aligned_cols=55 Identities=13% Similarity=0.130 Sum_probs=34.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCccCCcce-------eEE--EEEEeCCeEEEEEeCCCCCCC
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISHITPTQG-------FNI--KSVQSEGFKLNVWDIGGQRKI 95 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~~~~~~~-------~~~--~~~~~~~~~~~l~D~~G~~~~ 95 (162)
.++++|++|||||||+|.|.+.....+.+..+ .+. .-+...+ ...++||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~-g~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPN-GGLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCC-CcEEEeCCCcccc
Confidence 47999999999999999999776333332222 111 1122221 1268999995443
No 345
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.43 E-value=5e-07 Score=66.44 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=48.2
Q ss_pred CCChhhHHhhcccCCEEEEEEECCChh-hHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 93 RKIRPYWRNYFDNTDILIYVIDSADVK-RFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 93 ~~~~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+++..+.+.+++.+|.+++|+|++++. ++..+..|+..+.. .++|+++|+||+||.+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~ 82 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDD 82 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCC
Confidence 566677778899999999999999877 88888888875543 47899999999999654
No 346
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.39 E-value=7.9e-07 Score=68.90 Aligned_cols=57 Identities=16% Similarity=0.327 Sum_probs=39.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-----CccCCcceeEEEEEEeC-CeEEEEEeCCCCCCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-----SHITPTQGFNIKSVQSE-GFKLNVWDIGGQRKI 95 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~~ 95 (162)
.++.++|.+|||||||+|+++.... ...++.+|.+....... +..+.++||||....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINS 217 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCCh
Confidence 5899999999999999999987542 23455555554433322 234679999996544
No 347
>KOG0410|consensus
Probab=98.38 E-value=5.6e-06 Score=62.37 Aligned_cols=126 Identities=18% Similarity=0.158 Sum_probs=76.5
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCC---CCccCCcceeEEEEEEeCC-eEEEEEeCCCCCC-Chh-h------HH
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASED---ISHITPTQGFNIKSVQSEG-FKLNVWDIGGQRK-IRP-Y------WR 100 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~-~~~~l~D~~G~~~-~~~-~------~~ 100 (162)
........|.++|=+++|||||+++|.... ..+...|...+.......+ ..+-+-||-|.-. ... + ..
T Consensus 173 r~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATL 252 (410)
T KOG0410|consen 173 REGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATL 252 (410)
T ss_pred cccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHH
Confidence 344556779999999999999999998543 2223344444444445443 5566679888322 111 1 12
Q ss_pred hhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCC----cEEEEEeCCCCCCCCCCCC
Q psy689 101 NYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGV----PLLVYANKQDLLGAAPAGY 159 (162)
Q Consensus 101 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~iivv~nK~Dl~~~~~~~~ 159 (162)
..+..+|.++.|.|++.|+--.+... ....++....+.. .++=|-||.|........|
T Consensus 253 eeVaeadlllHvvDiShP~ae~q~e~-Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E 314 (410)
T KOG0410|consen 253 EEVAEADLLLHVVDISHPNAEEQRET-VLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE 314 (410)
T ss_pred HHHhhcceEEEEeecCCccHHHHHHH-HHHHHHhcCCCcHHHHhHHHhhccccccccccCccc
Confidence 23567899999999998764333222 2222333222332 3566788888887776655
No 348
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.35 E-value=5.9e-07 Score=66.04 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCc---cC--------CcceeEEEEEEeCCeEEEEEeCCCCCCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDISH---IT--------PTQGFNIKSVQSEGFKLNVWDIGGQRKI 95 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~~---~~--------~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 95 (162)
-.++++|++|||||||+|+|.+..... .+ +|.......+ .+ -.++||||...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 368899999999999999999765222 11 1222222222 22 278999996554
No 349
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=4.2e-06 Score=65.17 Aligned_cols=110 Identities=17% Similarity=0.109 Sum_probs=78.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCc------cCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISH------ITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
.|+..|.-..|||||++.+.+..... ...|+...+......+..+.+.|.||++++-......+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 36677889999999999998886322 233444555666667789999999999998877777778899999999
Q ss_pred ECCChhhHH-HHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 114 DSADVKRFE-ESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 114 d~~~~~~~~-~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++++.-.-+ .......+.+ .....++|+||+|..++
T Consensus 82 ~~deGl~~qtgEhL~iLdll-----gi~~giivltk~D~~d~ 118 (447)
T COG3276 82 AADEGLMAQTGEHLLILDLL-----GIKNGIIVLTKADRVDE 118 (447)
T ss_pred eCccCcchhhHHHHHHHHhc-----CCCceEEEEeccccccH
Confidence 996422111 1111222222 24466999999999875
No 350
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.32 E-value=1.4e-05 Score=54.51 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
....|+.+.|+|||||||++.++...
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHH
Confidence 34689999999999999999887643
No 351
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=6.9e-07 Score=67.08 Aligned_cols=116 Identities=19% Similarity=0.195 Sum_probs=74.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCc--ceeEE------------------EEEEeC------------CeE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPT--QGFNI------------------KSVQSE------------GFK 83 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~--~~~~~------------------~~~~~~------------~~~ 83 (162)
+..++|.++|....||||+.+.|.+-.....+.. .+.+. ..+... -..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 6789999999999999999999976542111100 00000 001100 146
Q ss_pred EEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHH--HHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFE--LHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 84 ~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+.+.|.||++-.......-..-.|++++|++++.+.-..+.... ..+++ .-..++|+=||.|+...+.
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-----gik~iiIvQNKIDlV~~E~ 157 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII-----GIKNIIIVQNKIDLVSRER 157 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-----ccceEEEEecccceecHHH
Confidence 88999999987766543333335999999999865433333332 23343 2458999999999987654
No 352
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.28 E-value=1.8e-05 Score=62.34 Aligned_cols=110 Identities=21% Similarity=0.188 Sum_probs=61.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc------CC-----CCcc-----------CCcceeEEEEEEe---------------
Q psy689 37 KELRILLLGLDNAGKTTILKTLAS------ED-----ISHI-----------TPTQGFNIKSVQS--------------- 79 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~------~~-----~~~~-----------~~~~~~~~~~~~~--------------- 79 (162)
++..|+++|++||||||++..|.. .. ...+ ....+..+.....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 456789999999999999988752 11 0000 1111111111110
Q ss_pred --CCeEEEEEeCCCCCCChhhH----Hhh--cccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCC
Q psy689 80 --EGFKLNVWDIGGQRKIRPYW----RNY--FDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151 (162)
Q Consensus 80 --~~~~~~l~D~~G~~~~~~~~----~~~--~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 151 (162)
.++.+.++||+|........ ... ....+.+++|+|++....-......+.+. -.+--+|+||.|.
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~-------~~~~g~IlTKlD~ 251 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDS-------VDVGSVIITKLDG 251 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhc-------cCCcEEEEECccC
Confidence 24678999999965543322 111 22468899999986432222222222211 2356788999997
Q ss_pred CC
Q psy689 152 LG 153 (162)
Q Consensus 152 ~~ 153 (162)
..
T Consensus 252 ~a 253 (429)
T TIGR01425 252 HA 253 (429)
T ss_pred CC
Confidence 43
No 353
>KOG0448|consensus
Probab=98.27 E-value=1e-05 Score=66.01 Aligned_cols=68 Identities=12% Similarity=0.224 Sum_probs=45.3
Q ss_pred EEEEEeCCCCCCC---hhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 83 KLNVWDIGGQRKI---RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 83 ~~~l~D~~G~~~~---~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
.+.+.|.||.+.- ..-...+..++|++++|+.+.+.-+. .....+...-+ .+..|.|+-||.|.....
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~-sek~Ff~~vs~----~KpniFIlnnkwDasase 277 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTL-SEKQFFHKVSE----EKPNIFILNNKWDASASE 277 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHH-HHHHHHHHhhc----cCCcEEEEechhhhhccc
Confidence 4778999995543 33446678889999999999864332 22223333332 256788888888987764
No 354
>PRK13796 GTPase YqeH; Provisional
Probab=98.26 E-value=1.3e-06 Score=67.79 Aligned_cols=57 Identities=16% Similarity=0.280 Sum_probs=38.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC-----CCccCCcceeEEEEEEeC-CeEEEEEeCCCCCC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASED-----ISHITPTQGFNIKSVQSE-GFKLNVWDIGGQRK 94 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~ 94 (162)
..++.++|.+|||||||+|+|.... ....++.+|.+....... +-...++||||...
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCccc
Confidence 3579999999999999999998543 222445556554433321 12247999999643
No 355
>KOG0705|consensus
Probab=98.26 E-value=8.1e-07 Score=70.76 Aligned_cols=112 Identities=21% Similarity=0.385 Sum_probs=79.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCcc-CCcceeEEEE--EEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHI-TPTQGFNIKS--VQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~-~~~~~~~~~~--~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
.-+++|+.|+|..++|||+|+.+++.+.+... +|..+...+. +..+..-+.+.|-+|..+ ..|...+|++++
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 34579999999999999999999887774443 4444433333 334556777888877332 346678999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 151 (162)
||...+..+|+........+-....-..+|+++++++-=.
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~i 141 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHI 141 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchh
Confidence 9999999999887776555543333356888888877533
No 356
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.23 E-value=2.7e-06 Score=63.99 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=35.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCccCCc-------ceeEE--EEEEeCCeEEEEEeCCCCCCCh
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDISHITPT-------QGFNI--KSVQSEGFKLNVWDIGGQRKIR 96 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~~~~~~-------~~~~~--~~~~~~~~~~~l~D~~G~~~~~ 96 (162)
..++++|++|+|||||+|.|.+.....+... .+.+. ..+...+ ...++||||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCccC
Confidence 5799999999999999999988652221111 11111 1222221 23689999986653
No 357
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.23 E-value=1.6e-05 Score=61.75 Aligned_cols=119 Identities=15% Similarity=0.086 Sum_probs=63.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC---CCc-------cCC--------------cceeEEEEEE-----------e
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED---ISH-------ITP--------------TQGFNIKSVQ-----------S 79 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~---~~~-------~~~--------------~~~~~~~~~~-----------~ 79 (162)
..+.-.++++||+|+||||++.+|.... ... ... ..+.....+. .
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l 213 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL 213 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh
Confidence 3456688999999999999998886432 110 000 0011111111 1
Q ss_pred CCeEEEEEeCCCCCCChhhHH---hhc---ccCCEEEEEEECCC-hhhHHHHHHHHHHHhhCCCCCC-CcEEEEEeCCCC
Q psy689 80 EGFKLNVWDIGGQRKIRPYWR---NYF---DNTDILIYVIDSAD-VKRFEESGFELHELLSDEKLTG-VPLLVYANKQDL 151 (162)
Q Consensus 80 ~~~~~~l~D~~G~~~~~~~~~---~~~---~~~d~vl~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~-~~iivv~nK~Dl 151 (162)
.+..+.++||+|......... ..+ ....-.++|++++. .+.+..+...+..........- ..-=+|+||.|-
T Consensus 214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE 293 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE 293 (374)
T ss_pred cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecccc
Confidence 346788999999765443321 112 22345688999865 4444444444444322211000 123467799886
Q ss_pred CC
Q psy689 152 LG 153 (162)
Q Consensus 152 ~~ 153 (162)
..
T Consensus 294 t~ 295 (374)
T PRK14722 294 AS 295 (374)
T ss_pred CC
Confidence 44
No 358
>PRK00098 GTPase RsgA; Reviewed
Probab=98.22 E-value=3.3e-06 Score=63.85 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~ 62 (162)
..++++|++|+|||||+|.|.+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 468899999999999999998776
No 359
>KOG0464|consensus
Probab=98.21 E-value=3.1e-07 Score=71.12 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=83.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC--------CCc---------cCCcceeE----EEEEEeCCeEEEEEeCCCCCCCh
Q psy689 38 ELRILLLGLDNAGKTTILKTLASED--------ISH---------ITPTQGFN----IKSVQSEGFKLNVWDIGGQRKIR 96 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~--------~~~---------~~~~~~~~----~~~~~~~~~~~~l~D~~G~~~~~ 96 (162)
--+|.++..-.+||||.-.++++-. ... .....|++ -.+++|.+.+++++||||+-+|+
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 4578999999999999998876432 111 11122333 23577888999999999999999
Q ss_pred hhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 97 PYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 97 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
-..+.+++--|+++.|||.+-...-+....| .+.-+ -++|-..++||+|.....
T Consensus 117 leverclrvldgavav~dasagve~qtltvw-rqadk----~~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVW-RQADK----FKIPAHCFINKMDKLAAN 170 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCcccceeeee-hhccc----cCCchhhhhhhhhhhhhh
Confidence 9999999999999999999876554444444 33222 378999999999987654
No 360
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.20 E-value=3.4e-05 Score=58.84 Aligned_cols=24 Identities=42% Similarity=0.661 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc
Q psy689 37 KELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~ 60 (162)
.+-.++++|++|+||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456788999999999999988753
No 361
>KOG1143|consensus
Probab=98.18 E-value=4.6e-06 Score=63.99 Aligned_cols=113 Identities=18% Similarity=0.261 Sum_probs=70.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCC-----------------ccCCcceeEEEEEEeC--------------------
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDIS-----------------HITPTQGFNIKSVQSE-------------------- 80 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~-----------------~~~~~~~~~~~~~~~~-------------------- 80 (162)
.++++++|-..+|||||+--|..++.. +...|..+..+.+.++
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 689999999999999998777544311 0111111111111111
Q ss_pred -CeEEEEEeCCCCCCChhhHHhhccc--CCEEEEEEECCChhhHHHH-HHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 81 -GFKLNVWDIGGQRKIRPYWRNYFDN--TDILIYVIDSADVKRFEES-GFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 81 -~~~~~l~D~~G~~~~~~~~~~~~~~--~d~vl~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
..-+.++|++|+.+|.......+.. .|..+++++++.......- ..-+... -++|++|+.+|+|+.+...
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~A------L~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAA------LNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHH------hCCCeEEEEEeeccccchh
Confidence 1347899999999987765443332 4888999998764332211 1112222 2889999999999987643
No 362
>KOG3859|consensus
Probab=98.16 E-value=5.8e-06 Score=61.10 Aligned_cols=117 Identities=19% Similarity=0.310 Sum_probs=72.9
Q ss_pred hcCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCcc-----CCcceeEEEEEEeCC----eEEEEEeCCCCCC-------
Q psy689 31 LRSSPEKELRILLLGLDNAGKTTILKTLASEDISHI-----TPTQGFNIKSVQSEG----FKLNVWDIGGQRK------- 94 (162)
Q Consensus 31 ~~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~-----~~~~~~~~~~~~~~~----~~~~l~D~~G~~~------- 94 (162)
.+....=.++|+-+|..|.|||||+..|++..+... .|+......+++.+. .++.+.||.|-.+
T Consensus 35 ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~S 114 (406)
T KOG3859|consen 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDS 114 (406)
T ss_pred HHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccc
Confidence 334445578999999999999999999998874432 233333334444432 6778999999322
Q ss_pred ChhhH-------Hhhc---------------ccCCEEEEEEECCChhhHHHHHH-HHHHHhhCCCCCCCcEEEEEeCCCC
Q psy689 95 IRPYW-------RNYF---------------DNTDILIYVIDSADVKRFEESGF-ELHELLSDEKLTGVPLLVYANKQDL 151 (162)
Q Consensus 95 ~~~~~-------~~~~---------------~~~d~vl~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~Dl 151 (162)
|.... ..|+ .+.|++|+++.++. .++..+.. .+... .++..||.|+-|.|.
T Consensus 115 yk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~L-----dskVNIIPvIAKaDt 188 (406)
T KOG3859|consen 115 YKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKL-----DSKVNIIPVIAKADT 188 (406)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHH-----hhhhhhHHHHHHhhh
Confidence 22221 1122 24589999999886 34444333 22222 146778888888876
Q ss_pred CC
Q psy689 152 LG 153 (162)
Q Consensus 152 ~~ 153 (162)
..
T Consensus 189 is 190 (406)
T KOG3859|consen 189 IS 190 (406)
T ss_pred hh
Confidence 43
No 363
>KOG0465|consensus
Probab=98.14 E-value=2.7e-06 Score=68.50 Aligned_cols=116 Identities=20% Similarity=0.237 Sum_probs=82.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC-----CCc------------cCCcceeE----EEEEEeCCeEEEEEeCCCCCCC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED-----ISH------------ITPTQGFN----IKSVQSEGFKLNVWDIGGQRKI 95 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~-----~~~------------~~~~~~~~----~~~~~~~~~~~~l~D~~G~~~~ 95 (162)
+.-+|.++..=.|||||+-+++++.. ... .....|++ -..+.|.+.+++++||||+-+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 45678888888999999988876432 110 11112222 2245667899999999999999
Q ss_pred hhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 96 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
.-.....++--|+.++++|.-....-+. ...|+++.++ ++|-+.+.||+|..+..+-
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt-~tV~rQ~~ry----~vP~i~FiNKmDRmGa~~~ 174 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQT-ETVWRQMKRY----NVPRICFINKMDRMGASPF 174 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhh-HHHHHHHHhc----CCCeEEEEehhhhcCCChH
Confidence 8888888888999999999765433233 3344555444 7899999999999987653
No 364
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.13 E-value=1.9e-05 Score=56.14 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=58.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC----------------------ccCCcceeEEEEEE-----------------e
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDIS----------------------HITPTQGFNIKSVQ-----------------S 79 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~----------------------~~~~~~~~~~~~~~-----------------~ 79 (162)
..++++||+||||||.+-+|...... .+....+....... .
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 46889999999999998777432100 01112222222111 1
Q ss_pred CCeEEEEEeCCCCCCChhhH----Hhhc--ccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 80 EGFKLNVWDIGGQRKIRPYW----RNYF--DNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 80 ~~~~~~l~D~~G~~~~~~~~----~~~~--~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
++..+.++||+|........ ..++ ...+-+++|.+++.... .+. ......... + +-=+++||.|-..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~-~~~~~~~~~---~-~~~lIlTKlDet~ 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLE-QALAFYEAF---G-IDGLILTKLDETA 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHH-HHHHHHHHS---S-TCEEEEESTTSSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHH-HHHHHhhcc---c-CceEEEEeecCCC
Confidence 23568999999976654322 1111 24688999999876432 222 222221111 1 2256689998654
No 365
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.13 E-value=4.4e-05 Score=57.03 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=38.7
Q ss_pred CeEEEEEeCCCCCCChhhHH----h---hc-----ccCCEEEEEEECCCh-hhHHHHHHHHHHHhhCCCCCCCcEEEEEe
Q psy689 81 GFKLNVWDIGGQRKIRPYWR----N---YF-----DNTDILIYVIDSADV-KRFEESGFELHELLSDEKLTGVPLLVYAN 147 (162)
Q Consensus 81 ~~~~~l~D~~G~~~~~~~~~----~---~~-----~~~d~vl~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iivv~n 147 (162)
++.+.++||||......... . .. ..+|.+++|+|++.. +.+..+ ....+.. .+--+|+|
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC----CCCEEEEE
Confidence 46789999999765433321 1 11 137899999998643 222222 2222211 24578899
Q ss_pred CCCCCCC
Q psy689 148 KQDLLGA 154 (162)
Q Consensus 148 K~Dl~~~ 154 (162)
|.|-...
T Consensus 226 KlDe~~~ 232 (272)
T TIGR00064 226 KLDGTAK 232 (272)
T ss_pred ccCCCCC
Confidence 9987543
No 366
>KOG1534|consensus
Probab=98.12 E-value=4.1e-06 Score=59.49 Aligned_cols=71 Identities=24% Similarity=0.270 Sum_probs=41.4
Q ss_pred eEEEEEeCCCCCCCh---hh---HHhhcccC---CEEEEEEECC---C-hhhHHHHHHHHHHHhhCCCCCCCcEEEEEeC
Q psy689 82 FKLNVWDIGGQRKIR---PY---WRNYFDNT---DILIYVIDSA---D-VKRFEESGFELHELLSDEKLTGVPLLVYANK 148 (162)
Q Consensus 82 ~~~~l~D~~G~~~~~---~~---~~~~~~~~---d~vl~v~d~~---~-~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK 148 (162)
-.+-++|+|||-..- +. ....+++. -++++++|.. + ..-+..+...+..++.. .+|-|=|++|
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~l----E~P~INvlsK 173 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISL----EVPHINVLSK 173 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHh----cCcchhhhhH
Confidence 357799999976531 11 22223332 3456666632 1 12233444555555543 7799999999
Q ss_pred CCCCCCCC
Q psy689 149 QDLLGAAP 156 (162)
Q Consensus 149 ~Dl~~~~~ 156 (162)
+||.....
T Consensus 174 MDLlk~~~ 181 (273)
T KOG1534|consen 174 MDLLKDKN 181 (273)
T ss_pred HHHhhhhh
Confidence 99988744
No 367
>KOG0460|consensus
Probab=98.09 E-value=6.1e-06 Score=62.52 Aligned_cols=118 Identities=16% Similarity=0.122 Sum_probs=74.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC----------CCc-----cCCcceeE--EEEE--EeCCeEEEEEeCCCCCCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED----------ISH-----ITPTQGFN--IKSV--QSEGFKLNVWDIGGQRKI 95 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~----------~~~-----~~~~~~~~--~~~~--~~~~~~~~l~D~~G~~~~ 95 (162)
..+.++|.-+|.-..|||||--.+..-. +.. ...-.|++ ..++ ......+--.|+||+.+|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 4557899999999999999966553210 111 11122233 2233 334466677899999988
Q ss_pred hhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 96 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
-.-..--..+.|+.++|+.++|.. +.+..+.+.-..+. .-..++|++||.|+.++.+
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQV---GV~~ivvfiNKvD~V~d~e 187 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQV---GVKHIVVFINKVDLVDDPE 187 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHc---CCceEEEEEecccccCCHH
Confidence 654433445579999999998742 33334443333333 2357999999999996543
No 368
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=3e-05 Score=60.52 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q psy689 37 KELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~ 59 (162)
.+.+|+++|++||||||++..|.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHH
Confidence 34689999999999999998885
No 369
>KOG0447|consensus
Probab=98.08 E-value=4.6e-05 Score=61.25 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=48.8
Q ss_pred eEEEEEeCCCC-------------CCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeC
Q psy689 82 FKLNVWDIGGQ-------------RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANK 148 (162)
Q Consensus 82 ~~~~l~D~~G~-------------~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK 148 (162)
.++.+.|+||. +...++...+++..+++++|+.-.+ ................+.+...|+|++|
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 46789999992 1233456778899999999996443 2233344444455545567889999999
Q ss_pred CCCCCCC
Q psy689 149 QDLLGAA 155 (162)
Q Consensus 149 ~Dl~~~~ 155 (162)
.|+.+.+
T Consensus 489 VDlAEkn 495 (980)
T KOG0447|consen 489 VDLAEKN 495 (980)
T ss_pred cchhhhc
Confidence 9998764
No 370
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.07 E-value=5.3e-05 Score=51.49 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=36.1
Q ss_pred CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCC
Q psy689 81 GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQD 150 (162)
Q Consensus 81 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 150 (162)
+..+.++||+|.... . ..++..+|.++++..++-.+ ........+... .=+++.||.|
T Consensus 91 ~~D~iiIDtaG~~~~--~-~~~~~~Ad~~ivv~tpe~~D---~y~~~k~~~~~~------~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS--E-VDIASMADTTVVVMAPGAGD---DIQAIKAGIMEI------ADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh--h-hhHHHhCCEEEEEECCCchh---HHHHhhhhHhhh------cCEEEEeCCC
Confidence 357889999886422 2 34778899999999887322 222222233322 3378899987
No 371
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.05 E-value=7.6e-06 Score=61.27 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy689 40 RILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~ 62 (162)
..+++|.+|||||||+|+|....
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchh
Confidence 67888999999999999998754
No 372
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.05 E-value=5.9e-05 Score=58.64 Aligned_cols=109 Identities=16% Similarity=0.096 Sum_probs=60.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcce-eEEEEEEe---------------------------------CC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDI-SHITPTQG-FNIKSVQS---------------------------------EG 81 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~-~~~~~~~~---------------------------------~~ 81 (162)
++-.++++||+||||||.+-+|..... ..-....+ ++..++.. .+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 366789999999999999877754432 11222222 11222211 24
Q ss_pred eEEEEEeCCCCCCChhhH----HhhcccC--CEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 82 FKLNVWDIGGQRKIRPYW----RNYFDNT--DILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 82 ~~~~l~D~~G~~~~~~~~----~~~~~~~--d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
+.+.++||.|...+.... ..++..+ .-+.+|++++... ..+...+...... + .==+++||.|=.
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~~~----~-i~~~I~TKlDET 351 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFSLF----P-IDGLIFTKLDET 351 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhccC----C-cceeEEEccccc
Confidence 678999999977665543 3333333 4456777776532 2333333333211 1 224667888843
No 373
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.05 E-value=2.2e-05 Score=60.54 Aligned_cols=119 Identities=13% Similarity=0.122 Sum_probs=76.8
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCc-----------------cCCcceeEEEEEEeC--------------
Q psy689 32 RSSPEKELRILLLGLDNAGKTTILKTLASEDISH-----------------ITPTQGFNIKSVQSE-------------- 80 (162)
Q Consensus 32 ~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~-----------------~~~~~~~~~~~~~~~-------------- 80 (162)
....+..+.+.+.|.-+.|||||+-.|..+.... ...+....+..+-++
T Consensus 111 ~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~a 190 (527)
T COG5258 111 TEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEA 190 (527)
T ss_pred ccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHH
Confidence 3346678999999999999999998876543111 011222222222221
Q ss_pred ---------CeEEEEEeCCCCCCChhhHHh--hcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCC
Q psy689 81 ---------GFKLNVWDIGGQRKIRPYWRN--YFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQ 149 (162)
Q Consensus 81 ---------~~~~~l~D~~G~~~~~~~~~~--~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 149 (162)
+.-+.+.|+.|++.|-+.... .-++.|-.++++.+++..+ .+...-.-+... ...|++++.||+
T Consensus 191 E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi~~a---~~lPviVvvTK~ 265 (527)
T COG5258 191 EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGIALA---MELPVIVVVTKI 265 (527)
T ss_pred HHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhhhhh---hcCCEEEEEEec
Confidence 234778999999998765433 3467899999999987533 333322222222 378999999999
Q ss_pred CCCCCC
Q psy689 150 DLLGAA 155 (162)
Q Consensus 150 Dl~~~~ 155 (162)
|+..+.
T Consensus 266 D~~~dd 271 (527)
T COG5258 266 DMVPDD 271 (527)
T ss_pred ccCcHH
Confidence 997654
No 374
>PRK14974 cell division protein FtsY; Provisional
Probab=98.01 E-value=2.9e-05 Score=59.55 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q psy689 37 KELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~ 59 (162)
++..++++|++|+||||++..+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA 161 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLA 161 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999999777664
No 375
>KOG1487|consensus
Probab=98.00 E-value=2.4e-05 Score=57.43 Aligned_cols=88 Identities=16% Similarity=0.139 Sum_probs=59.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC--CccCCcc-eeEEEEEEeCCeEEEEEeCCCCCCC-------hhhHHhhcccCCE
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI--SHITPTQ-GFNIKSVQSEGFKLNVWDIGGQRKI-------RPYWRNYFDNTDI 108 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~--~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~~~d~ 108 (162)
.+|.++|-|++||||++..+.+... ..+.-+. -.......+.+-++++.|+||.-+- ........+.|..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 5899999999999999999887752 1111111 1112234456788999999994321 1223345688999
Q ss_pred EEEEEECCChhhHHHHHH
Q psy689 109 LIYVIDSADVKRFEESGF 126 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~~ 126 (162)
+++|.|+-.+-+...+.+
T Consensus 140 i~~vld~~kp~~hk~~ie 157 (358)
T KOG1487|consen 140 IFIVLDVLKPLSHKKIIE 157 (358)
T ss_pred EEEEeeccCcccHHHHHH
Confidence 999999988766665444
No 376
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.97 E-value=2e-05 Score=57.37 Aligned_cols=48 Identities=23% Similarity=0.374 Sum_probs=35.5
Q ss_pred HHHHHHHHHhHHHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 14 ENQVKDLALGLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
+.+.+++...+...+........++.-+++.|++|||||||++.+.+.
T Consensus 9 ~~~~~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 9 DEEIEAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred hHhHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 344555555555556666556677899999999999999999987643
No 377
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.97 E-value=5.6e-05 Score=57.67 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=37.9
Q ss_pred EEEEEeCCCCCCChhhHHhhcc--------cCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 83 KLNVWDIGGQRKIRPYWRNYFD--------NTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 83 ~~~l~D~~G~~~~~~~~~~~~~--------~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
...++++.|..+..+....++. ..+.++.++|+.+..............+.. .=+||+||.|+..+
T Consensus 92 d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~~ 165 (318)
T PRK11537 92 DRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAGE 165 (318)
T ss_pred CEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCCH
Confidence 3467789998776655544322 138899999986532211111111111221 22889999999864
No 378
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=4.1e-05 Score=66.71 Aligned_cols=111 Identities=20% Similarity=0.211 Sum_probs=60.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCcc-------CCcceeEEEEEEeCCeEEEEEeCCC----CC----CChhhHHhh---
Q psy689 41 ILLLGLDNAGKTTILKTLASEDISHI-------TPTQGFNIKSVQSEGFKLNVWDIGG----QR----KIRPYWRNY--- 102 (162)
Q Consensus 41 v~viG~~~sGKStli~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~D~~G----~~----~~~~~~~~~--- 102 (162)
.+|||++|+||||++..-.- .+... ....| +...=.+-.-+-.++||.| ++ .-...|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl-~Fpl~~~~~~~~~~~~g-T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGL-QFPLAEQMGALGLAGPG-TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhcccc-cCcchhhhccccccCCC-CcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 67899999999999864221 11110 01111 1111122233456779888 21 122334322
Q ss_pred ------cccCCEEEEEEECCCh-----hhH----HHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 103 ------FDNTDILIYVIDSADV-----KRF----EESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 103 ------~~~~d~vl~v~d~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
.+..++|++.+|+.+. ..- ..+...+.++..... -..||++++||.|+...
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~-~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH-ARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEeccccccc
Confidence 3556999999996531 111 112222333333322 47899999999999863
No 379
>KOG1424|consensus
Probab=97.90 E-value=1.5e-05 Score=63.15 Aligned_cols=54 Identities=17% Similarity=0.300 Sum_probs=43.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeE--EEEEEeCCeEEEEEeCCCC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDISHITPTQGFN--IKSVQSEGFKLNVWDIGGQ 92 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~D~~G~ 92 (162)
.++|++||=|+|||||+||.|.+......+.|+|-+ +.++... -.+.|.||||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-~~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-PSVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-CCceecCCCCc
Confidence 589999999999999999999999977778888844 3344433 35678999993
No 380
>KOG2485|consensus
Probab=97.89 E-value=4.7e-05 Score=57.09 Aligned_cols=64 Identities=16% Similarity=0.360 Sum_probs=43.8
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC-----CCccCCcceeEEEE---EEe-CCeEEEEEeCCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED-----ISHITPTQGFNIKS---VQS-EGFKLNVWDIGG 91 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~-----~~~~~~~~~~~~~~---~~~-~~~~~~l~D~~G 91 (162)
+.......+.++.+.|+|-||+|||||+|.+.... .....+.+|++... +.. ..-.+.+.||||
T Consensus 133 l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPG 205 (335)
T KOG2485|consen 133 LVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPG 205 (335)
T ss_pred HHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCC
Confidence 33444456788999999999999999999886554 23344445554432 222 335688999999
No 381
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.89 E-value=0.00013 Score=57.92 Aligned_cols=24 Identities=46% Similarity=0.595 Sum_probs=20.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Q psy689 36 EKELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~ 59 (162)
.++..++++|++|+||||++..|.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHH
Confidence 346789999999999999987764
No 382
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.89 E-value=0.0003 Score=55.77 Aligned_cols=22 Identities=41% Similarity=0.450 Sum_probs=18.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q psy689 38 ELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~ 59 (162)
.-.++++||+||||||++..|.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA 242 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLA 242 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999877664
No 383
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.88 E-value=0.00027 Score=48.99 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=39.3
Q ss_pred CeEEEEEeCCCCCCChhhH----Hhh--cccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 81 GFKLNVWDIGGQRKIRPYW----RNY--FDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 81 ~~~~~l~D~~G~~~~~~~~----~~~--~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+..+.+.|++|........ ..+ ....+.+++|+|...... ...+.....+.. + ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 3567889999975432211 111 124799999999865332 223333332221 2 35778899997664
Q ss_pred C
Q psy689 155 A 155 (162)
Q Consensus 155 ~ 155 (162)
.
T Consensus 155 ~ 155 (173)
T cd03115 155 G 155 (173)
T ss_pred c
Confidence 3
No 384
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.86 E-value=0.00024 Score=56.04 Aligned_cols=25 Identities=36% Similarity=0.371 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 36 EKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
...-+++++|++|+||||++..|.+
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998765
No 385
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.82 E-value=0.00034 Score=48.96 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++.-.++++|+.|+|||||++.+.+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456689999999999999999988864
No 386
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.00047 Score=55.83 Aligned_cols=25 Identities=44% Similarity=0.509 Sum_probs=20.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 36 EKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
...-.++++|++|+||||++..|..
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456889999999999999988753
No 387
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.81 E-value=0.00015 Score=50.79 Aligned_cols=110 Identities=19% Similarity=0.245 Sum_probs=61.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-C---C--------CCcc------CCcceeEEEEEEe---------------------C
Q psy689 40 RILLLGLDNAGKTTILKTLAS-E---D--------ISHI------TPTQGFNIKSVQS---------------------E 80 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~-~---~--------~~~~------~~~~~~~~~~~~~---------------------~ 80 (162)
-+++.|--|||||||+++++. . . +... -...+.....+.. .
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~ 81 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREY 81 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhc
Confidence 367899999999999999982 1 1 1100 0011122222221 1
Q ss_pred --CeEEEEEeCCCCCCChhhH--Hhh---cccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 81 --GFKLNVWDIGGQRKIRPYW--RNY---FDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 81 --~~~~~l~D~~G~~~~~~~~--~~~---~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
+...-+.++.|........ ... .-..+.++.|+|+.+..........+...+... =+|++||+|+..
T Consensus 82 ~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A------DvIvlnK~D~~~ 155 (178)
T PF02492_consen 82 EERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA------DVIVLNKIDLVS 155 (178)
T ss_dssp HGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHH
T ss_pred CCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc------CEEEEeccccCC
Confidence 2345677888866555541 000 122588999999976543334444444444332 289999999876
Q ss_pred CC
Q psy689 154 AA 155 (162)
Q Consensus 154 ~~ 155 (162)
..
T Consensus 156 ~~ 157 (178)
T PF02492_consen 156 DE 157 (178)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 388
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.00029 Score=59.26 Aligned_cols=24 Identities=33% Similarity=0.356 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~ 61 (162)
.-.++++|++||||||++.+|...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 457899999999999999888643
No 389
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.81 E-value=0.00025 Score=43.68 Aligned_cols=97 Identities=18% Similarity=0.098 Sum_probs=55.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhh-HHhhcccCCEEEEEEECCChh
Q psy689 41 ILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPY-WRNYFDNTDILIYVIDSADVK 119 (162)
Q Consensus 41 v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-~~~~~~~~d~vl~v~d~~~~~ 119 (162)
+++.|.+|+||||+...+...-.. .+.....+. .+.++|+++....... .......+|.++++++.+...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~ 72 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALA 72 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhh
Confidence 578899999999998877654311 111111111 6788899986554431 134567789999999987532
Q ss_pred hHHHHHHHHHHHhhCCCCCCCcEEEEEe
Q psy689 120 RFEESGFELHELLSDEKLTGVPLLVYAN 147 (162)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~iivv~n 147 (162)
....................+..++.|
T Consensus 73 -~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 73 -VLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred -HHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 233333222222222223455666554
No 390
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.80 E-value=1.9e-05 Score=51.36 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy689 40 RILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~ 61 (162)
.|+|.|++||||||+++.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998764
No 391
>KOG2423|consensus
Probab=97.80 E-value=1.3e-05 Score=62.00 Aligned_cols=68 Identities=21% Similarity=0.387 Sum_probs=50.0
Q ss_pred HHHHHhhc--CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEE-EEEeCCeEEEEEeCCCC
Q psy689 25 LAILKKLR--SSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIK-SVQSEGFKLNVWDIGGQ 92 (162)
Q Consensus 25 ~~~~~~~~--~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~D~~G~ 92 (162)
..+++.+. ....+.+.|.++|=|++||||+||.|.........|.+|-+.. .+..=-.+|.|+|+||.
T Consensus 292 I~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPGv 362 (572)
T KOG2423|consen 292 IQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPGV 362 (572)
T ss_pred HHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCCc
Confidence 44444443 2466789999999999999999999999999999998884321 11111257889999993
No 392
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.79 E-value=3.3e-05 Score=55.88 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=28.0
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++......++.--++|+||+|||||||+|.+.+-.
T Consensus 21 L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 21 LKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred cccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44555556666779999999999999999987765
No 393
>KOG2484|consensus
Probab=97.79 E-value=2.8e-05 Score=59.99 Aligned_cols=68 Identities=19% Similarity=0.380 Sum_probs=52.6
Q ss_pred hHHHHHHhhcCC--CCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEE--EEEeCCeEEEEEeCCC
Q psy689 23 GLLAILKKLRSS--PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIK--SVQSEGFKLNVWDIGG 91 (162)
Q Consensus 23 ~~~~~~~~~~~~--~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~D~~G 91 (162)
.+..++..++.. ..+.++++|+|=|++||||+||+|.........+++|.+.. .+.. +..|.|.|.||
T Consensus 235 ~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L-dk~i~llDsPg 306 (435)
T KOG2484|consen 235 TLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL-DKKIRLLDSPG 306 (435)
T ss_pred HHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec-cCCceeccCCc
Confidence 345566666654 67789999999999999999999999987777777776543 2222 35788999999
No 394
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.76 E-value=1.9e-05 Score=56.50 Aligned_cols=38 Identities=29% Similarity=0.464 Sum_probs=30.5
Q ss_pred HHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 25 LAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 25 ~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
...++.+.....+.-.++++||+|||||||++++.+-+
T Consensus 15 ~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 34455666667777889999999999999999987655
No 395
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.76 E-value=0.00045 Score=54.74 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=18.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHH
Q psy689 37 KELRILLLGLDNAGKTTILKTL 58 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l 58 (162)
++..++++|++||||||++-.|
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakL 119 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKL 119 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHH
Confidence 4678899999999999996554
No 396
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.75 E-value=0.00078 Score=50.73 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=25.7
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCCC
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASEDI 63 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~~ 63 (162)
+...+-.+++++|++|-|||++++++...+.
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp 86 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHP 86 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCC
Confidence 3445567899999999999999999987763
No 397
>PRK10867 signal recognition particle protein; Provisional
Probab=97.72 E-value=0.00053 Score=54.44 Aligned_cols=24 Identities=42% Similarity=0.569 Sum_probs=19.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Q psy689 36 EKELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~ 59 (162)
.++..++++|++||||||++-.|.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHH
Confidence 346788999999999999765553
No 398
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.72 E-value=3e-05 Score=54.35 Aligned_cols=22 Identities=55% Similarity=0.792 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy689 40 RILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~ 61 (162)
+|+|+|+|||||||+.++|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998765
No 399
>PRK08118 topology modulation protein; Reviewed
Probab=97.72 E-value=3.1e-05 Score=53.70 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy689 40 RILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~ 61 (162)
+|+|+|++||||||+.+.|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988654
No 400
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.71 E-value=5.9e-05 Score=50.66 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=35.1
Q ss_pred HhhcccCCEEEEEEECCChhhHH--HHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 100 RNYFDNTDILIYVIDSADVKRFE--ESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 100 ~~~~~~~d~vl~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
...++.+|++++|+|++++.+.. .+..++... . .++|+++|+||+|+...
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~-~~k~~iivlNK~DL~~~ 57 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----D-PRKKNILLLNKADLLTE 57 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----c-CCCcEEEEEechhcCCH
Confidence 45678899999999998765433 222333221 1 46899999999999643
No 401
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.71 E-value=5.2e-05 Score=42.66 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=24.6
Q ss_pred CCEEEEEEECCChhhH--HHHHHHHHHHhhCCCCCCCcEEEEEeCCC
Q psy689 106 TDILIYVIDSADVKRF--EESGFELHELLSDEKLTGVPLLVYANKQD 150 (162)
Q Consensus 106 ~d~vl~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~iivv~nK~D 150 (162)
.++|++++|++..+.+ +.-...+.++...- ++.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 4899999999876544 33333344444332 4889999999998
No 402
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.70 E-value=4e-05 Score=44.04 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy689 40 RILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~ 59 (162)
..+|.|+.||||||++..+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999998764
No 403
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.69 E-value=4.5e-05 Score=52.69 Aligned_cols=43 Identities=35% Similarity=0.416 Sum_probs=32.7
Q ss_pred HHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcce
Q psy689 25 LAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQG 71 (162)
Q Consensus 25 ~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~ 71 (162)
..++..++....+.-.++++||+|+|||||++.+..-. +|+.|
T Consensus 16 a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li----sp~~G 58 (223)
T COG4619 16 AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI----SPTSG 58 (223)
T ss_pred CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc----CCCCc
Confidence 34455566666677789999999999999999987663 56666
No 404
>PRK13695 putative NTPase; Provisional
Probab=97.67 E-value=0.00044 Score=48.07 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy689 40 RILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~ 60 (162)
+++++|++|+|||||+..+.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998643
No 405
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.67 E-value=0.00058 Score=52.20 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=42.4
Q ss_pred eEEEEEeCCCCCCChhhHHhhcc--------cCCEEEEEEECCChhhHHH-HHHHHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 82 FKLNVWDIGGQRKIRPYWRNYFD--------NTDILIYVIDSADVKRFEE-SGFELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 82 ~~~~l~D~~G~~~~~~~~~~~~~--------~~d~vl~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
...-++++.|...-.+....+.. .-|+++-|+|+........ ....+...+.. .=+||+||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccCC
Confidence 34567889997776555544433 1378999999876433222 22333332322 228999999999
Q ss_pred CCCC
Q psy689 153 GAAP 156 (162)
Q Consensus 153 ~~~~ 156 (162)
++..
T Consensus 159 ~~~~ 162 (323)
T COG0523 159 DAEE 162 (323)
T ss_pred CHHH
Confidence 8764
No 406
>PRK07261 topology modulation protein; Provisional
Probab=97.66 E-value=4.1e-05 Score=53.25 Aligned_cols=22 Identities=27% Similarity=0.661 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy689 40 RILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~ 61 (162)
+|+|+|++|||||||++.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999988643
No 407
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.65 E-value=7.9e-05 Score=51.73 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy689 40 RILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~ 61 (162)
++++.|++|+||||+++++...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 408
>KOG1533|consensus
Probab=97.63 E-value=0.00013 Score=52.89 Aligned_cols=71 Identities=23% Similarity=0.251 Sum_probs=40.8
Q ss_pred eEEEEEeCCCCCCChh------hHHhhcccCCE---EEEEEE---CCChhhHHHHHH-HHHHHhhCCCCCCCcEEEEEeC
Q psy689 82 FKLNVWDIGGQRKIRP------YWRNYFDNTDI---LIYVID---SADVKRFEESGF-ELHELLSDEKLTGVPLLVYANK 148 (162)
Q Consensus 82 ~~~~l~D~~G~~~~~~------~~~~~~~~~d~---vl~v~d---~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK 148 (162)
....++|+|||-++-. ..-..+...+. ++-++| .+++..|-...- .+..+... ..|-+=|+.|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~m----elphVNvlSK 172 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHM----ELPHVNVLSK 172 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhh----cccchhhhhH
Confidence 4678999999655321 11222333443 344445 356666555332 33344332 5677888999
Q ss_pred CCCCCCCC
Q psy689 149 QDLLGAAP 156 (162)
Q Consensus 149 ~Dl~~~~~ 156 (162)
+|++...+
T Consensus 173 ~Dl~~~yg 180 (290)
T KOG1533|consen 173 ADLLKKYG 180 (290)
T ss_pred hHHHHhhc
Confidence 99987665
No 409
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.63 E-value=0.00012 Score=51.58 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=31.2
Q ss_pred HHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 25 LAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 25 ~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
...+++++...++.-=+.++||+|+|||||++.+....
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 44567777777777778899999999999999988765
No 410
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.63 E-value=8.7e-05 Score=50.57 Aligned_cols=53 Identities=25% Similarity=0.388 Sum_probs=35.8
Q ss_pred hhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 96 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
+.+.+..++++|++++|+|++++..... ..+...... .+.|+++|+||+|+..
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~ 55 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVP 55 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCC
Confidence 4566777888999999999987543222 112222221 3679999999999864
No 411
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.62 E-value=0.00014 Score=55.99 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy689 40 RILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~ 61 (162)
-.++.|--|||||||+++++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3678899999999999999754
No 412
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.62 E-value=0.00023 Score=49.61 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
...+.++|++|||||||++++....
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHH
Confidence 4468999999999999999988663
No 413
>PRK12289 GTPase RsgA; Reviewed
Probab=97.61 E-value=0.00014 Score=56.21 Aligned_cols=53 Identities=25% Similarity=0.202 Sum_probs=38.6
Q ss_pred hHHhhcccCCEEEEEEECCChh-hHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 98 YWRNYFDNTDILIYVIDSADVK-RFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 98 ~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+.+..+..+|.+++|+|+.++. ....+..|+..+.. .++|+++|+||+||...
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~ILVlNK~DLv~~ 135 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEIVLCLNKADLVSP 135 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEchhcCCh
Confidence 3445678899999999998765 33345556554422 47899999999999743
No 414
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.61 E-value=0.00014 Score=54.84 Aligned_cols=50 Identities=20% Similarity=0.143 Sum_probs=39.8
Q ss_pred hhcccCCEEEEEEECCChh-hHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 101 NYFDNTDILIYVIDSADVK-RFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 101 ~~~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
..+..+|.+++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+.
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~ 124 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDD 124 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCCh
Confidence 3578899999999999887 77777777665543 37899999999999754
No 415
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.61 E-value=5.1e-05 Score=50.77 Aligned_cols=21 Identities=43% Similarity=0.631 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy689 41 ILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 41 v~viG~~~sGKStli~~l~~~ 61 (162)
|+++|++||||||+++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998733
No 416
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.60 E-value=6e-05 Score=50.13 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.+.-.++|+|+.|+|||||++.+.+..
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 445578999999999999999988875
No 417
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.58 E-value=0.0011 Score=43.61 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
....+++.|++|+|||++++.+...-
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999987664
No 418
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.56 E-value=0.00024 Score=49.75 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=23.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.+..-.+.|+||+|+|||||+|.+.+-.
T Consensus 22 v~~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 22 VPAGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHhcc
Confidence 4556689999999999999999988765
No 419
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.00065 Score=53.57 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhc
Q psy689 38 ELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~ 60 (162)
+..++++|++||||||++.+|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999988763
No 420
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.56 E-value=8.3e-05 Score=54.06 Aligned_cols=43 Identities=35% Similarity=0.466 Sum_probs=34.7
Q ss_pred HHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcce
Q psy689 25 LAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQG 71 (162)
Q Consensus 25 ~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~ 71 (162)
...+++++......-++.++|++|||||||++.+.+- +.|+.|
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi----~~Pt~G 82 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI----YKPTSG 82 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCc----cCCCCc
Confidence 3445566667777889999999999999999998887 467777
No 421
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.56 E-value=0.0016 Score=51.28 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=25.2
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHh
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~ 59 (162)
.+++...-.-.+-++|+||.-+|||||++++.
T Consensus 7 ykDIa~RT~GdIYiGVVGPVRTGKSTFIKRFM 38 (492)
T PF09547_consen 7 YKDIAERTGGDIYIGVVGPVRTGKSTFIKRFM 38 (492)
T ss_pred HHHHHHhcCCceEEEeecCcccCchhHHHHHH
Confidence 33444444557889999999999999999985
No 422
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.0016 Score=51.08 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q psy689 37 KELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~ 59 (162)
.+..++++|++||||||.+..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA 195 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLA 195 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999988775
No 423
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.55 E-value=3.4e-05 Score=55.16 Aligned_cols=38 Identities=29% Similarity=0.370 Sum_probs=31.3
Q ss_pred hHHHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 23 GLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
+-.+.++++....++.--.+++||+|+|||||++.+-.
T Consensus 18 g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHh
Confidence 44666778888888888889999999999999988743
No 424
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.53 E-value=0.00014 Score=51.32 Aligned_cols=53 Identities=21% Similarity=0.170 Sum_probs=37.4
Q ss_pred ChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 95 IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 95 ~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+...+..+++.+|++++|+|++++..- |...+... ..+.|+++|+||+|+...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~ 76 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPK 76 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCC
Confidence 567778889999999999999875421 11111111 146799999999999753
No 425
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.52 E-value=9.4e-05 Score=52.96 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
+++...++|+|++|||||||++.+.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999998864
No 426
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.52 E-value=0.00086 Score=44.95 Aligned_cols=102 Identities=16% Similarity=0.124 Sum_probs=58.6
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEe----CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCC
Q psy689 42 LLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQS----EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD 117 (162)
Q Consensus 42 ~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~ 117 (162)
+.-|.+|+||||+.-.+...-......+ .....+. -++.+.++|+|+.. .......+..+|.++++++.+.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~---~~vd~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRV---LLLDADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcE---EEEECCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh
Confidence 4557899999999655532210000000 0000000 01677899999753 3334567889999999999875
Q ss_pred hhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCC
Q psy689 118 VKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151 (162)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 151 (162)
. ++......+..+.... ...++.+|.|+.+-
T Consensus 79 ~-s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 79 T-SITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred h-HHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 3 3333333333333222 35578899999864
No 427
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.52 E-value=0.00018 Score=49.16 Aligned_cols=51 Identities=27% Similarity=0.333 Sum_probs=33.4
Q ss_pred hhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 101 NYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 101 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
..+.++|++++|+|++++..- ....+...+... ..+.|+++|+||+|+...
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~ 54 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPT 54 (157)
T ss_pred HhhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCH
Confidence 456889999999999876321 112222222221 235899999999999643
No 428
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.52 E-value=5.8e-05 Score=52.81 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=26.4
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
+++++...++.-.++++|++|+|||||++.+.+
T Consensus 11 l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 344555566777899999999999999998864
No 429
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.51 E-value=0.00035 Score=48.94 Aligned_cols=47 Identities=26% Similarity=0.367 Sum_probs=37.3
Q ss_pred HHHHHHH--hHHHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 16 QVKDLAL--GLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 16 ~~~~~~~--~~~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.++++.. +-++.++-.+......--|.|+|.+|||||||++++..-+
T Consensus 8 ~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE 56 (256)
T COG4598 8 EVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE 56 (256)
T ss_pred ehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhc
Confidence 4556655 4477788888888888899999999999999998876554
No 430
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.00046 Score=53.76 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=20.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Q psy689 36 EKELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~ 59 (162)
.++-.++++|++|+||||++..+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHH
Confidence 345678899999999999998875
No 431
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.51 E-value=9.6e-05 Score=61.92 Aligned_cols=42 Identities=29% Similarity=0.449 Sum_probs=33.8
Q ss_pred HHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcce
Q psy689 26 AILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQG 71 (162)
Q Consensus 26 ~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~ 71 (162)
..+++++...++.-+|+++|++|||||||++.+.+-. .|+.|
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly----~p~~G 528 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY----KPQQG 528 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCc
Confidence 3566667777788899999999999999999998774 45444
No 432
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.51 E-value=9.6e-05 Score=60.11 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=28.9
Q ss_pred HHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 27 ~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.+++.....++.-+++++|++|||||||++.+.+-.
T Consensus 350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345555556677789999999999999999998664
No 433
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.50 E-value=7.2e-05 Score=54.53 Aligned_cols=37 Identities=30% Similarity=0.470 Sum_probs=29.2
Q ss_pred HHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 26 AILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 26 ~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
..++++.....+.--|.++||+|+|||||++.+.+-.
T Consensus 17 ~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 17 EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445555666666678999999999999999998765
No 434
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=4.9e-05 Score=54.47 Aligned_cols=34 Identities=32% Similarity=0.374 Sum_probs=26.3
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+++......+. .++++|++|+|||||++.+.+-.
T Consensus 16 l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 16 LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred EcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 33444444456 89999999999999999998764
No 435
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.48 E-value=5.2e-05 Score=55.89 Aligned_cols=35 Identities=40% Similarity=0.414 Sum_probs=27.3
Q ss_pred HHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 27 ~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
++++++...+..--++++||.|||||||++.+.+-
T Consensus 17 il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEecceEEecCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 34455555666667889999999999999998764
No 436
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.48 E-value=0.00011 Score=51.75 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy689 40 RILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~ 61 (162)
.++++|++||||||+++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6889999999999999999655
No 437
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.47 E-value=0.00018 Score=55.10 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=26.0
Q ss_pred HhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 29 KKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 29 ~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
..+.......--++++||+|+||||+++.+.+-+
T Consensus 20 ~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 20 KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344444455568899999999999999998775
No 438
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.47 E-value=0.00013 Score=52.23 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=28.8
Q ss_pred HHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 27 ~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++...+....+.--+.|+||.|+|||||++.|++.-
T Consensus 16 ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel 51 (259)
T COG4559 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL 51 (259)
T ss_pred eccCcceeccCCcEEEEECCCCccHHHHHHHhhCcc
Confidence 344555566667778999999999999999998874
No 439
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.46 E-value=7.4e-05 Score=53.60 Aligned_cols=36 Identities=33% Similarity=0.322 Sum_probs=28.9
Q ss_pred HHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 27 ~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++++++....+.-.++++|++|||||||++.+.+..
T Consensus 17 il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345555566667789999999999999999998764
No 440
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.45 E-value=7.9e-05 Score=52.53 Aligned_cols=35 Identities=37% Similarity=0.432 Sum_probs=27.5
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+..+.....+.-.++++|+.|||||||++.+.+..
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444555566679999999999999999998764
No 441
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.44 E-value=8.1e-05 Score=53.40 Aligned_cols=36 Identities=33% Similarity=0.423 Sum_probs=28.6
Q ss_pred HHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 27 ~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.+.++.....+.-.++++|+.|||||||++.+.+..
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345555556667789999999999999999998764
No 442
>PF05729 NACHT: NACHT domain
Probab=97.44 E-value=0.00063 Score=46.26 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy689 40 RILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~ 62 (162)
-++|.|++|+||||++..+...-
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 37899999999999999887543
No 443
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.44 E-value=0.00014 Score=42.78 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy689 41 ILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 41 v~viG~~~sGKStli~~l~~~ 61 (162)
+++.|++||||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999988765
No 444
>KOG0780|consensus
Probab=97.44 E-value=0.00081 Score=52.13 Aligned_cols=99 Identities=22% Similarity=0.233 Sum_probs=57.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCC-----------cc-----------CCcce-eEEEEE-------------
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDIS-----------HI-----------TPTQG-FNIKSV------------- 77 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~~-----------~~-----------~~~~~-~~~~~~------------- 77 (162)
...++--|.++|-.|+||||.+-.|.+.... .+ ....+ ..+..+
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv 176 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGV 176 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHH
Confidence 4555667889999999999998877533200 00 00011 111111
Q ss_pred ---EeCCeEEEEEeCCCCCCChhhH-Hh-----hcccCCEEEEEEECCChhhHHHHHHHHHHHh
Q psy689 78 ---QSEGFKLNVWDIGGQRKIRPYW-RN-----YFDNTDILIYVIDSADVKRFEESGFELHELL 132 (162)
Q Consensus 78 ---~~~~~~~~l~D~~G~~~~~~~~-~~-----~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~ 132 (162)
..+++.+.|.||.|........ .. -.-..|-+++|.|++-..........+++..
T Consensus 177 ~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~v 240 (483)
T KOG0780|consen 177 DRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETV 240 (483)
T ss_pred HHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhh
Confidence 1135789999999965443321 11 1123699999999986555445444555543
No 445
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.44 E-value=0.00021 Score=51.99 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=25.5
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 32 RSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 32 ~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
....++.-.++++|+.|+|||||++.+.+..
T Consensus 6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344556679999999999999999998875
No 446
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.44 E-value=7.2e-05 Score=54.96 Aligned_cols=35 Identities=34% Similarity=0.462 Sum_probs=29.1
Q ss_pred HHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 27 ~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
.++++....++.--+.++||.|+|||||++.+++-
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56666666666778899999999999999999884
No 447
>PRK00098 GTPase RsgA; Reviewed
Probab=97.43 E-value=0.00019 Score=54.30 Aligned_cols=48 Identities=21% Similarity=0.169 Sum_probs=35.7
Q ss_pred hcccCCEEEEEEECCChhhHHHH-HHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 102 YFDNTDILIYVIDSADVKRFEES-GFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 102 ~~~~~d~vl~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
....+|.+++|+|++++...... ..|+..+.. .++|+++|+||+|+.+
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~ 125 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLD 125 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCC
Confidence 35889999999999887654443 445444432 4789999999999963
No 448
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.43 E-value=6e-05 Score=54.24 Aligned_cols=35 Identities=34% Similarity=0.435 Sum_probs=28.0
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++++....++.-.++++|++|+|||||++.+.+..
T Consensus 20 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 20 LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 44455555667789999999999999999998764
No 449
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.43 E-value=0.00074 Score=45.01 Aligned_cols=27 Identities=33% Similarity=0.294 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+..-.+++.|+.|+|||||++.+...-
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344579999999999999999987653
No 450
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.43 E-value=7.5e-05 Score=53.46 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=27.7
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++.......+.-.++++|+.|+|||||++.+.+..
T Consensus 17 l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 17 LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44444455566789999999999999999998764
No 451
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.43 E-value=0.00012 Score=51.14 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy689 40 RILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~ 61 (162)
.++|+|++||||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999997654
No 452
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.41 E-value=8.8e-05 Score=50.99 Aligned_cols=22 Identities=41% Similarity=0.684 Sum_probs=17.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy689 40 RILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~ 61 (162)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6899999999999999998644
No 453
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.41 E-value=9.8e-05 Score=53.44 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=29.5
Q ss_pred HHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 27 ~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++++++...++.-.++++|++|+|||||++.+.+..
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355556666677789999999999999999998764
No 454
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.41 E-value=9.5e-05 Score=54.08 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=29.0
Q ss_pred HHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 27 ~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++.++.....+.-.++++|++|||||||++.+.+..
T Consensus 17 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 355555566677789999999999999999998754
No 455
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.40 E-value=0.00017 Score=47.14 Aligned_cols=25 Identities=40% Similarity=0.453 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI 63 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~ 63 (162)
-.++++|++|+||||++..+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4789999999999999999887763
No 456
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.40 E-value=9.2e-05 Score=53.06 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=27.8
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+........+.-.++++|++|+|||||++.+.+..
T Consensus 16 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444455667789999999999999999998764
No 457
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.40 E-value=7.7e-05 Score=53.23 Aligned_cols=35 Identities=37% Similarity=0.287 Sum_probs=27.8
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+++......+.-.++++|+.|||||||++.+.+..
T Consensus 16 l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 16 LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44444455566789999999999999999998764
No 458
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.40 E-value=0.00015 Score=46.47 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=21.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHh
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~ 59 (162)
....-.++++|++|+|||||++.+.
T Consensus 12 i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 12 VYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 3445678999999999999999976
No 459
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.40 E-value=6.9e-05 Score=53.89 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=27.7
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+.++....++.-.++++|++|||||||++.+.+-.
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 19 LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444455666789999999999999999998764
No 460
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.40 E-value=9.1e-05 Score=53.44 Aligned_cols=35 Identities=29% Similarity=0.288 Sum_probs=27.7
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+++......+.-.++++|+.|||||||++.+.+..
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred eeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44445555566789999999999999999998764
No 461
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.39 E-value=0.00015 Score=51.64 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~ 61 (162)
+++++++|+.||||||+++++...
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999987654
No 462
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.39 E-value=0.00018 Score=51.53 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 36 EKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
.++..|+|.|++|||||||++.|..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999988864
No 463
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=7.2e-05 Score=54.51 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=27.8
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+.+++....+.-.++++|+.|+|||||++.+.+..
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444555666789999999999999999998764
No 464
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.38 E-value=9.2e-05 Score=53.35 Aligned_cols=36 Identities=39% Similarity=0.344 Sum_probs=28.7
Q ss_pred HHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 27 ~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+++++....++.-.++++|++|||||||++.+.+-.
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345555555666789999999999999999998764
No 465
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.38 E-value=0.00016 Score=48.51 Aligned_cols=21 Identities=48% Similarity=0.686 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy689 41 ILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 41 v~viG~~~sGKStli~~l~~~ 61 (162)
++++||+||||||+++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 688999999999999999865
No 466
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.38 E-value=0.00011 Score=53.42 Aligned_cols=35 Identities=26% Similarity=0.242 Sum_probs=27.9
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+.++.....+.-.++++|+.|||||||++.+.+..
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred eccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44445555666789999999999999999998764
No 467
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.38 E-value=9.3e-05 Score=53.27 Aligned_cols=32 Identities=25% Similarity=0.195 Sum_probs=25.9
Q ss_pred hcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 31 LRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 31 ~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.....++.-.++++|++|+|||||++.+.+..
T Consensus 6 vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 6 TDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34445556689999999999999999998764
No 468
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.38 E-value=0.00015 Score=60.80 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=28.7
Q ss_pred HHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 27 ~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.++++....++.-+++++|++|||||||++.+.+-.
T Consensus 468 vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344555556667789999999999999999998874
No 469
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.00022 Score=50.52 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=31.1
Q ss_pred HHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 25 LAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 25 ~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
...+++.+....+.--++++||+|+||||++|.+.+--
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCc
Confidence 44567777777777789999999999999999987653
No 470
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.37 E-value=9.1e-05 Score=53.12 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=28.1
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++++.....+.-.++++|++|||||||++.+.+..
T Consensus 16 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 16 LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44555555667789999999999999999998764
No 471
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.37 E-value=0.00015 Score=53.00 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=24.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
..+.+++++|+|++|||||+++..++...
T Consensus 9 l~~~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 9 LLKDPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred hcCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 34668999999999999999998887654
No 472
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.37 E-value=0.0001 Score=52.86 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=27.9
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+.++.....+.-.++++|++|+|||||++.+.+..
T Consensus 15 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 44455555667789999999999999999998764
No 473
>PRK06217 hypothetical protein; Validated
Probab=97.37 E-value=0.00017 Score=50.60 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy689 40 RILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~ 61 (162)
+|+|+|.+||||||+..+|...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988754
No 474
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.37 E-value=8.3e-05 Score=53.31 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=27.8
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+.++.....+.-.++++|++|||||||++.+.+..
T Consensus 17 l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44444555666789999999999999999998764
No 475
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.36 E-value=0.00023 Score=51.03 Aligned_cols=27 Identities=26% Similarity=0.528 Sum_probs=22.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
..++.-++|+|++||||||+++.|...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 345667889999999999999998643
No 476
>PRK01889 GTPase RsgA; Reviewed
Probab=97.36 E-value=0.00013 Score=56.60 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.-+++++|++|+|||||+|.+.+..
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhc
Confidence 3589999999999999999998764
No 477
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.36 E-value=0.0014 Score=48.75 Aligned_cols=81 Identities=22% Similarity=0.176 Sum_probs=43.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEE-E--EEEeCC-eEEEEEeCCCCCCChhhHHhhcccCCEEEEEEEC
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNI-K--SVQSEG-FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~-~--~~~~~~-~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
-++|.|++||||||+++.++..-... .... .+. . ++...+ ..+.+ +......+.......++.---++++-.+
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~-~~~i-itiEdp~E~~~~~~~q~~v-~~~~~~~~~~~l~~~lR~~PD~i~vgEi 158 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTP-EKNI-ITVEDPVEYQIPGINQVQV-NEKAGLTFARGLRAILRQDPDIIMVGEI 158 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCC-CCeE-EEECCCceecCCCceEEEe-CCcCCcCHHHHHHHHhccCCCEEEeccC
Confidence 58999999999999999886543211 0000 010 0 111112 12222 1111224555556666655556677777
Q ss_pred CChhhHHH
Q psy689 116 ADVKRFEE 123 (162)
Q Consensus 116 ~~~~~~~~ 123 (162)
.+++++..
T Consensus 159 R~~e~a~~ 166 (264)
T cd01129 159 RDAETAEI 166 (264)
T ss_pred CCHHHHHH
Confidence 77665443
No 478
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.36 E-value=0.00012 Score=52.88 Aligned_cols=35 Identities=34% Similarity=0.342 Sum_probs=27.8
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+++......+.-.++++|++|||||||++.+.+..
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 44444555667789999999999999999987764
No 479
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.35 E-value=0.00013 Score=53.09 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=27.6
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+........+.-.++++|+.|||||||++.+.+..
T Consensus 16 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred ecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 34444555666789999999999999999998764
No 480
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.35 E-value=0.00028 Score=54.17 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=28.7
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDI 63 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~~ 63 (162)
+++++....+.-.++|+|++|+|||||++.+.+-..
T Consensus 23 l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 23 VDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred EeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 445555556667799999999999999999988753
No 481
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.00015 Score=52.67 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=31.9
Q ss_pred HHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 26 AILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 26 ~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
..+++++....+.-.+.++|++|||||||.+.+.+-.
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 4667777777888899999999999999999998765
No 482
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.35 E-value=0.0019 Score=41.23 Aligned_cols=98 Identities=17% Similarity=0.061 Sum_probs=54.8
Q ss_pred EcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEe---CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhh
Q psy689 44 LGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQS---EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKR 120 (162)
Q Consensus 44 iG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~ 120 (162)
=+..|+||||+...|...-.... |....-++. ....+.+.|+|+.... .....+..+|.++++++.+. .+
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~----~~~~~l~d~d~~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~-~s 78 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEA----GRRVLLVDLDLQFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL-PS 78 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcC----CCcEEEEECCCCCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-HH
Confidence 35679999998766532221000 000000100 1126789999986543 33456788999999998775 34
Q ss_pred HHHHHHHHHHHhhCCCCCCCcEEEEEeC
Q psy689 121 FEESGFELHELLSDEKLTGVPLLVYANK 148 (162)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~iivv~nK 148 (162)
..........+.+........+.+|+|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 79 IRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4455555444443322114567788875
No 483
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.34 E-value=0.0002 Score=51.05 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=26.6
Q ss_pred HhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 29 KKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 29 ~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.+......+.-.++++|++|+|||||++.+.+..
T Consensus 15 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 15 DDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444444556679999999999999999998764
No 484
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.34 E-value=0.00014 Score=61.15 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=29.3
Q ss_pred HHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 27 ~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.++++....++.-+++++|++|||||||++.+.+-.
T Consensus 494 vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455555566677899999999999999999998774
No 485
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.34 E-value=0.00011 Score=53.46 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=28.3
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++.+.....+.-.++++|+.|||||||++.+.+..
T Consensus 21 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44555555667789999999999999999998764
No 486
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.34 E-value=0.00019 Score=50.07 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy689 40 RILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~ 62 (162)
.++++|++||||||+++.|....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 57899999999999999998753
No 487
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.34 E-value=0.0018 Score=40.87 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=47.4
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeC-CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCCh
Q psy689 41 ILLLG-LDNAGKTTILKTLASEDISHITPTQGFNIKSVQSE-GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADV 118 (162)
Q Consensus 41 v~viG-~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~ 118 (162)
+++.| ..|+||||+...+...-... +....-++.+ ...+.++|+|+..... ....+..+|.++++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~-----~~~vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~- 73 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARR-----GKRVLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSP- 73 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhC-----CCcEEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCH-
Confidence 45666 56999999976654332111 1111111111 1667899999865432 3367788999999999764
Q ss_pred hhHHHHHHHH
Q psy689 119 KRFEESGFEL 128 (162)
Q Consensus 119 ~~~~~~~~~~ 128 (162)
.++......+
T Consensus 74 ~s~~~~~~~~ 83 (104)
T cd02042 74 LDLDGLEKLL 83 (104)
T ss_pred HHHHHHHHHH
Confidence 3444544443
No 488
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.34 E-value=9.3e-05 Score=53.60 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=28.7
Q ss_pred HHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 27 ~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.+.++.....+.-.++++|++|+|||||++.+.+..
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344555556667789999999999999999998764
No 489
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.34 E-value=0.00081 Score=50.18 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc
Q psy689 37 KELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~ 60 (162)
+.-+++++|++|+||||++..+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 346999999999999999887743
No 490
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.34 E-value=0.00014 Score=53.22 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=27.8
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
+.++.....+.-.++++|++|+|||||++.+.+.
T Consensus 16 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EeccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4445555666778999999999999999999886
No 491
>KOG0469|consensus
Probab=97.33 E-value=0.0015 Score=52.31 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=71.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCC------------C---CccCCcceeEEEE--EE------------------
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASED------------I---SHITPTQGFNIKS--VQ------------------ 78 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~------------~---~~~~~~~~~~~~~--~~------------------ 78 (162)
...+.-++.++.....|||||-..|.... + .......+++.+. +.
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d 94 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGD 94 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCC
Confidence 34455678899999999999988874321 0 0111122233221 11
Q ss_pred eCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCC
Q psy689 79 SEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151 (162)
Q Consensus 79 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 151 (162)
..+.-++++|.||+-+|.......++-.|+.|+|+|+-+..-.+ ....+.+.+.. .+.-+++.||+|.
T Consensus 95 ~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQ-TETVLrQA~~E----RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 95 GNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TETVLRQAIAE----RIKPVLVMNKMDR 162 (842)
T ss_pred CcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEec-hHHHHHHHHHh----hccceEEeehhhH
Confidence 12366899999999999999889999999999999975432111 12233333332 3445778999995
No 492
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.33 E-value=9.5e-05 Score=53.32 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=27.8
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+.++.....+.-.++++|+.|+|||||++.+.+..
T Consensus 21 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44444555666789999999999999999998764
No 493
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.33 E-value=0.00017 Score=51.19 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy689 41 ILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 41 v~viG~~~sGKStli~~l~~~ 61 (162)
|+|.|++|||||||++.+...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988553
No 494
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.33 E-value=0.00023 Score=50.66 Aligned_cols=27 Identities=41% Similarity=0.614 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.+.-.++++|++|||||||++.+....
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345678999999999999999987653
No 495
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.33 E-value=0.00012 Score=52.69 Aligned_cols=36 Identities=31% Similarity=0.247 Sum_probs=28.6
Q ss_pred HHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 27 ~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++.+......+.-.++++|+.|+|||||++.+.+-.
T Consensus 20 il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 344555555667789999999999999999998764
No 496
>PRK14530 adenylate kinase; Provisional
Probab=97.33 E-value=0.0002 Score=51.55 Aligned_cols=22 Identities=55% Similarity=0.611 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy689 39 LRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~ 60 (162)
.+|+|+|++||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998853
No 497
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.32 E-value=0.00015 Score=52.57 Aligned_cols=36 Identities=28% Similarity=0.348 Sum_probs=29.0
Q ss_pred HHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 27 ~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++.++....++.-.++++|++|+|||||++.+.+..
T Consensus 18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 455555556666679999999999999999998764
No 498
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.32 E-value=0.00021 Score=51.52 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=27.1
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+.++.....+.-.++++|+.|||||||++.+.+..
T Consensus 20 l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444445556679999999999999999998764
No 499
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.32 E-value=0.0001 Score=54.57 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=28.4
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+.++.....+.-.++|+|++|+|||||++.+.+..
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44555556667789999999999999999998764
No 500
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.32 E-value=0.00022 Score=51.07 Aligned_cols=33 Identities=33% Similarity=0.305 Sum_probs=26.1
Q ss_pred hhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 30 KLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 30 ~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.......+.-.++++|+.|||||||++.+.+..
T Consensus 18 ~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 18 DISFSVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 333344556678999999999999999998864
Done!