Query psy689
Match_columns 162
No_of_seqs 110 out of 1363
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 21:04:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fzq_A ADP-ribosylation factor 100.0 2.8E-28 9.7E-33 169.8 14.1 130 27-156 5-134 (181)
2 1upt_A ARL1, ADP-ribosylation 100.0 5.1E-27 1.8E-31 161.0 16.3 122 35-156 4-125 (171)
3 4dkx_A RAS-related protein RAB 100.0 7.8E-28 2.7E-32 172.4 12.2 121 36-157 11-136 (216)
4 1r8s_A ADP-ribosylation factor 100.0 3.5E-27 1.2E-31 160.9 14.3 117 39-155 1-117 (164)
5 1m2o_B GTP-binding protein SAR 100.0 2.8E-27 9.5E-32 166.0 13.7 119 36-154 21-139 (190)
6 1ksh_A ARF-like protein 2; sma 99.9 2.6E-27 9E-32 165.0 13.2 121 36-156 16-136 (186)
7 1f6b_A SAR1; gtpases, N-termin 99.9 1.5E-27 5.1E-32 168.5 11.6 119 36-154 23-141 (198)
8 2b6h_A ADP-ribosylation factor 99.9 2.9E-27 1E-31 166.1 12.7 121 35-155 26-146 (192)
9 2h17_A ADP-ribosylation factor 99.9 1.5E-27 5.2E-32 165.8 10.5 124 32-155 15-138 (181)
10 1zj6_A ADP-ribosylation factor 99.9 3.1E-27 1.1E-31 165.0 11.7 121 36-156 14-134 (187)
11 4bas_A ADP-ribosylation factor 99.9 4.1E-27 1.4E-31 165.4 12.2 124 33-156 12-144 (199)
12 2x77_A ADP-ribosylation factor 99.9 3.4E-27 1.2E-31 164.9 11.0 121 36-156 20-140 (189)
13 2h57_A ADP-ribosylation factor 99.9 1.4E-26 4.8E-31 162.0 14.0 123 34-156 17-143 (190)
14 1zd9_A ADP-ribosylation factor 99.9 3.2E-26 1.1E-30 160.1 15.0 121 35-155 19-140 (188)
15 1moz_A ARL1, ADP-ribosylation 99.9 8.6E-27 3E-31 161.7 11.6 120 36-155 16-135 (183)
16 3q72_A GTP-binding protein RAD 99.9 1.3E-25 4.5E-30 153.4 14.7 120 38-157 2-124 (166)
17 3t5g_A GTP-binding protein RHE 99.9 3.6E-25 1.2E-29 153.4 15.0 122 36-157 4-129 (181)
18 3kkq_A RAS-related protein M-R 99.9 4.5E-25 1.5E-29 153.2 14.3 126 32-157 12-141 (183)
19 2nzj_A GTP-binding protein REM 99.9 9.3E-25 3.2E-29 150.2 15.3 121 36-156 2-128 (175)
20 1c1y_A RAS-related protein RAP 99.9 6.6E-25 2.3E-29 149.7 14.3 120 37-156 2-125 (167)
21 3oes_A GTPase rhebl1; small GT 99.9 4.3E-25 1.5E-29 155.9 13.6 122 36-157 22-147 (201)
22 2fn4_A P23, RAS-related protei 99.9 9.4E-25 3.2E-29 150.8 14.2 123 34-156 5-131 (181)
23 3tkl_A RAS-related protein RAB 99.9 1.8E-24 6.1E-29 151.5 15.6 126 31-157 9-139 (196)
24 1ek0_A Protein (GTP-binding pr 99.9 1.1E-24 3.7E-29 148.9 14.1 118 37-155 2-124 (170)
25 3ihw_A Centg3; RAS, centaurin, 99.9 1.7E-24 5.7E-29 151.1 15.3 116 33-153 15-133 (184)
26 1u8z_A RAS-related protein RAL 99.9 5.2E-25 1.8E-29 150.2 12.2 120 37-156 3-126 (168)
27 3bc1_A RAS-related protein RAB 99.9 1.6E-24 5.3E-29 151.2 14.6 121 35-155 8-143 (195)
28 1kao_A RAP2A; GTP-binding prot 99.9 2.8E-24 9.7E-29 146.3 15.5 120 37-156 2-125 (167)
29 1r2q_A RAS-related protein RAB 99.9 1E-24 3.4E-29 149.1 13.2 120 36-156 4-128 (170)
30 3o47_A ADP-ribosylation factor 99.9 2E-25 6.7E-30 169.0 10.6 120 37-156 164-283 (329)
31 1z06_A RAS-related protein RAB 99.9 1.7E-24 5.7E-29 151.3 14.2 122 35-156 17-144 (189)
32 2hup_A RAS-related protein RAB 99.9 1.2E-24 4.1E-29 153.8 13.6 122 33-155 24-150 (201)
33 2bme_A RAB4A, RAS-related prot 99.9 2.2E-24 7.6E-29 149.9 14.6 122 34-156 6-132 (186)
34 3tw8_B RAS-related protein RAB 99.9 2.1E-24 7.3E-29 149.0 14.3 121 34-156 5-130 (181)
35 2fu5_C RAS-related protein RAB 99.9 6.9E-25 2.4E-29 152.2 11.7 120 36-156 6-130 (183)
36 2bov_A RAla, RAS-related prote 99.9 4.6E-24 1.6E-28 150.5 16.0 122 35-156 11-136 (206)
37 4dsu_A GTPase KRAS, isoform 2B 99.9 3.6E-24 1.2E-28 148.9 15.1 119 36-154 2-124 (189)
38 2g6b_A RAS-related protein RAB 99.9 1.8E-24 6.1E-29 149.5 13.3 122 34-156 6-133 (180)
39 3q85_A GTP-binding protein REM 99.9 1.8E-24 6.1E-29 148.1 13.2 119 38-156 2-126 (169)
40 3q3j_B RHO-related GTP-binding 99.9 9.2E-25 3.2E-29 155.9 12.1 120 33-154 22-146 (214)
41 3cbq_A GTP-binding protein REM 99.9 2.8E-24 9.5E-29 151.4 14.3 122 35-156 20-147 (195)
42 2oil_A CATX-8, RAS-related pro 99.9 3E-24 1E-28 150.4 14.4 123 33-156 20-147 (193)
43 2fg5_A RAB-22B, RAS-related pr 99.9 2.3E-24 8E-29 151.1 13.8 120 35-155 20-144 (192)
44 1z0j_A RAB-22, RAS-related pro 99.9 2.4E-24 8.2E-29 147.3 13.4 120 36-156 4-128 (170)
45 2hxs_A RAB-26, RAS-related pro 99.9 9.9E-25 3.4E-29 150.6 11.4 121 35-155 3-131 (178)
46 1zbd_A Rabphilin-3A; G protein 99.9 7.5E-24 2.6E-28 149.4 16.1 120 36-156 6-130 (203)
47 1x3s_A RAS-related protein RAB 99.9 2.9E-24 9.8E-29 150.2 13.9 119 35-153 12-135 (195)
48 2efe_B Small GTP-binding prote 99.9 4.1E-24 1.4E-28 147.8 14.4 121 35-156 9-134 (181)
49 3lvq_E ARF-GAP with SH3 domain 99.9 1.4E-24 4.9E-29 172.3 13.6 120 36-155 320-439 (497)
50 2a9k_A RAS-related protein RAL 99.9 4.1E-24 1.4E-28 148.3 14.3 122 35-156 15-140 (187)
51 3reg_A RHO-like small GTPase; 99.9 4.1E-24 1.4E-28 149.9 13.9 119 34-154 19-142 (194)
52 2gf9_A RAS-related protein RAB 99.9 4.7E-24 1.6E-28 149.0 14.0 122 34-156 18-144 (189)
53 2ew1_A RAS-related protein RAB 99.9 4.8E-24 1.6E-28 151.0 14.2 122 34-156 22-148 (201)
54 3t1o_A Gliding protein MGLA; G 99.9 8.5E-25 2.9E-29 153.0 10.1 121 34-156 10-152 (198)
55 1z2a_A RAS-related protein RAB 99.9 1.3E-24 4.3E-29 148.5 10.5 119 36-156 3-126 (168)
56 1z0f_A RAB14, member RAS oncog 99.9 3.4E-24 1.2E-28 147.7 12.7 121 35-156 12-137 (179)
57 1wms_A RAB-9, RAB9, RAS-relate 99.9 8.7E-24 3E-28 145.7 14.7 118 35-152 4-129 (177)
58 1z08_A RAS-related protein RAB 99.9 2.4E-24 8.3E-29 147.5 11.7 120 36-156 4-128 (170)
59 2erx_A GTP-binding protein DI- 99.9 6.1E-24 2.1E-28 145.5 13.5 120 37-156 2-126 (172)
60 3c5c_A RAS-like protein 12; GD 99.9 3.9E-24 1.3E-28 149.5 12.7 121 35-156 18-144 (187)
61 2bcg_Y Protein YP2, GTP-bindin 99.9 1.5E-23 5.3E-28 148.2 15.8 121 35-156 5-130 (206)
62 2a5j_A RAS-related protein RAB 99.9 5.1E-24 1.8E-28 149.1 13.2 123 33-156 16-143 (191)
63 2atv_A RERG, RAS-like estrogen 99.9 7.6E-24 2.6E-28 148.8 14.0 120 36-156 26-149 (196)
64 1m7b_A RND3/RHOE small GTP-bin 99.9 3.2E-24 1.1E-28 149.3 11.9 117 35-153 4-125 (184)
65 2f7s_A C25KG, RAS-related prot 99.9 1.9E-24 6.6E-29 154.0 11.0 122 35-156 22-158 (217)
66 2iwr_A Centaurin gamma 1; ANK 99.9 1.8E-23 6.2E-28 144.4 15.3 112 36-152 5-121 (178)
67 2il1_A RAB12; G-protein, GDP, 99.9 7.4E-24 2.5E-28 148.6 13.5 123 33-156 21-148 (192)
68 2y8e_A RAB-protein 6, GH09086P 99.9 6E-24 2E-28 146.5 12.6 120 36-156 12-136 (179)
69 1ky3_A GTP-binding protein YPT 99.9 4.9E-24 1.7E-28 147.3 12.1 120 35-154 5-133 (182)
70 2fh5_B SR-beta, signal recogni 99.9 9.9E-24 3.4E-28 150.0 13.8 122 35-156 4-132 (214)
71 2ce2_X GTPase HRAS; signaling 99.9 2.4E-23 8.2E-28 141.4 14.9 116 38-153 3-122 (166)
72 3clv_A RAB5 protein, putative; 99.9 2.8E-23 9.5E-28 145.8 15.7 112 36-150 5-158 (208)
73 2atx_A Small GTP binding prote 99.9 1E-23 3.6E-28 147.7 13.4 117 36-154 16-137 (194)
74 3gj0_A GTP-binding nuclear pro 99.9 2.5E-24 8.6E-29 154.0 10.2 122 33-156 10-136 (221)
75 3cpj_B GTP-binding protein YPT 99.9 8.5E-24 2.9E-28 151.6 12.9 121 35-156 10-135 (223)
76 1g16_A RAS-related protein SEC 99.9 8E-24 2.8E-28 144.7 12.1 115 37-152 2-121 (170)
77 2q3h_A RAS homolog gene family 99.9 1.2E-23 4.2E-28 148.1 13.4 120 33-154 15-139 (201)
78 2p5s_A RAS and EF-hand domain 99.9 5.9E-24 2E-28 149.8 11.5 118 34-152 24-146 (199)
79 2o52_A RAS-related protein RAB 99.9 4E-24 1.4E-28 150.9 10.5 122 34-156 21-147 (200)
80 2yc2_C IFT27, small RAB-relate 99.9 2.3E-24 7.9E-29 152.2 8.9 118 36-153 18-146 (208)
81 3dz8_A RAS-related protein RAB 99.9 1.5E-24 5.3E-29 151.8 8.0 120 36-156 21-145 (191)
82 1gwn_A RHO-related GTP-binding 99.9 2.5E-23 8.4E-28 147.7 14.0 118 34-153 24-146 (205)
83 3l0i_B RAS-related protein RAB 99.9 1.4E-24 4.8E-29 153.0 7.3 126 31-157 26-156 (199)
84 2j0v_A RAC-like GTP-binding pr 99.9 5E-24 1.7E-28 151.4 10.0 117 36-154 7-128 (212)
85 1vg8_A RAS-related protein RAB 99.9 1.7E-23 5.7E-28 147.9 12.5 119 35-153 5-131 (207)
86 2gf0_A GTP-binding protein DI- 99.9 2.1E-23 7E-28 146.4 12.8 119 35-153 5-128 (199)
87 2j1l_A RHO-related GTP-binding 99.9 1.3E-23 4.3E-28 149.9 11.8 119 34-154 30-153 (214)
88 4djt_A GTP-binding nuclear pro 99.9 5.3E-24 1.8E-28 151.8 9.8 120 35-155 8-133 (218)
89 1mh1_A RAC1; GTP-binding, GTPa 99.9 1.7E-23 5.9E-28 145.1 12.0 117 36-154 3-124 (186)
90 3con_A GTPase NRAS; structural 99.9 4.5E-23 1.5E-27 143.9 14.0 117 37-153 20-140 (190)
91 3cph_A RAS-related protein SEC 99.9 3E-23 1E-27 147.1 13.3 117 35-152 17-138 (213)
92 4gzl_A RAS-related C3 botulinu 99.9 2.5E-23 8.4E-28 147.4 12.4 119 35-155 27-150 (204)
93 3bwd_D RAC-like GTP-binding pr 99.9 4E-24 1.4E-28 148.0 8.2 118 36-155 6-128 (182)
94 2g3y_A GTP-binding protein GEM 99.9 9E-23 3.1E-27 145.5 14.9 121 36-156 35-162 (211)
95 2gco_A H9, RHO-related GTP-bin 99.9 3.8E-23 1.3E-27 145.9 12.8 118 35-154 22-144 (201)
96 3llu_A RAS-related GTP-binding 99.9 1.3E-23 4.4E-28 147.8 9.8 119 33-153 15-143 (196)
97 2fv8_A H6, RHO-related GTP-bin 99.9 6.4E-23 2.2E-27 145.4 13.4 118 35-154 22-144 (207)
98 3r7w_A Gtpase1, GTP-binding pr 99.9 3.1E-23 1.1E-27 155.6 12.4 115 37-153 2-129 (307)
99 2zej_A Dardarin, leucine-rich 99.9 8.7E-24 3E-28 147.3 8.2 115 38-154 2-127 (184)
100 2ged_A SR-beta, signal recogni 99.9 5.2E-24 1.8E-28 149.0 5.4 123 35-158 45-175 (193)
101 2cjw_A GTP-binding protein GEM 99.9 1.1E-21 3.9E-26 137.6 14.7 120 36-155 4-130 (192)
102 3r7w_B Gtpase2, GTP-binding pr 99.9 1.7E-22 5.7E-27 151.8 10.2 112 40-154 1-121 (331)
103 1nrj_B SR-beta, signal recogni 99.9 9.5E-23 3.2E-27 145.3 7.2 121 35-156 9-137 (218)
104 2lkc_A Translation initiation 99.9 7E-22 2.4E-26 136.2 11.3 116 34-154 4-122 (178)
105 2wkq_A NPH1-1, RAS-related C3 99.9 1.2E-21 4.2E-26 147.4 12.9 119 34-154 151-274 (332)
106 2qu8_A Putative nucleolar GTP- 99.9 5.7E-21 1.9E-25 137.3 15.0 128 28-157 19-160 (228)
107 2gj8_A MNME, tRNA modification 99.9 1.5E-21 5.3E-26 134.7 11.1 116 37-154 3-130 (172)
108 3th5_A RAS-related C3 botulinu 99.8 1.1E-23 3.7E-28 148.9 0.0 119 35-155 27-150 (204)
109 2wji_A Ferrous iron transport 99.9 8.5E-21 2.9E-25 129.9 12.3 111 38-155 3-124 (165)
110 2dyk_A GTP-binding protein; GT 99.9 6.4E-21 2.2E-25 129.2 11.4 111 39-154 2-123 (161)
111 2f9l_A RAB11B, member RAS onco 99.9 1.7E-20 5.9E-25 132.0 13.3 118 37-155 4-126 (199)
112 3def_A T7I23.11 protein; chlor 99.8 9.4E-21 3.2E-25 139.1 12.1 132 23-155 21-167 (262)
113 3iev_A GTP-binding protein ERA 99.8 5E-20 1.7E-24 138.2 14.6 117 33-153 5-136 (308)
114 1oix_A RAS-related protein RAB 99.8 9.5E-20 3.2E-24 127.6 13.8 119 36-155 27-150 (191)
115 2wjg_A FEOB, ferrous iron tran 99.8 8.6E-20 2.9E-24 126.9 13.4 112 37-155 6-128 (188)
116 1svi_A GTP-binding protein YSX 99.8 8.1E-21 2.8E-25 132.8 7.8 115 35-155 20-150 (195)
117 1wf3_A GTP-binding protein; GT 99.8 1.5E-19 5.2E-24 135.2 15.0 116 36-154 5-132 (301)
118 3a1s_A Iron(II) transport prot 99.8 8.4E-20 2.9E-24 133.9 11.4 114 36-156 3-127 (258)
119 3i8s_A Ferrous iron transport 99.8 1.4E-19 4.9E-24 133.7 12.6 112 37-155 2-128 (274)
120 3pqc_A Probable GTP-binding pr 99.8 4E-20 1.4E-24 129.0 9.1 113 35-154 20-148 (195)
121 1cip_A Protein (guanine nucleo 99.8 6.1E-20 2.1E-24 139.9 10.8 85 68-152 179-273 (353)
122 3iby_A Ferrous iron transport 99.8 8.4E-20 2.9E-24 133.7 11.1 110 39-155 2-126 (256)
123 3c5h_A Glucocorticoid receptor 99.8 3.9E-20 1.3E-24 135.4 8.5 121 34-154 15-213 (255)
124 3lxw_A GTPase IMAP family memb 99.8 4E-19 1.4E-23 129.4 13.7 120 34-154 17-154 (247)
125 2cxx_A Probable GTP-binding pr 99.8 5.6E-21 1.9E-25 132.9 3.6 115 39-155 2-138 (190)
126 4fid_A G protein alpha subunit 99.8 1.5E-19 5.1E-24 136.7 11.3 87 67-153 146-242 (340)
127 1h65_A Chloroplast outer envel 99.8 3.1E-19 1.1E-23 131.5 12.7 132 23-155 24-170 (270)
128 3dpu_A RAB family protein; roc 99.8 2E-19 7E-24 143.9 12.6 118 34-156 37-167 (535)
129 3lxx_A GTPase IMAP family memb 99.8 1.6E-19 5.3E-24 130.7 9.7 122 35-158 26-164 (239)
130 3gee_A MNME, tRNA modification 99.8 2.2E-19 7.4E-24 141.7 10.8 114 37-156 232-360 (476)
131 3k53_A Ferrous iron transport 99.8 7.9E-19 2.7E-23 129.4 12.9 111 38-154 3-124 (271)
132 1mky_A Probable GTP-binding pr 99.8 5.5E-19 1.9E-23 138.4 12.5 110 39-153 2-124 (439)
133 3ohm_A Guanine nucleotide-bind 99.8 3.5E-19 1.2E-23 134.2 10.3 88 67-154 152-249 (327)
134 2hjg_A GTP-binding protein ENG 99.8 2.4E-19 8.3E-24 140.3 9.8 116 36-156 173-303 (436)
135 1azs_C GS-alpha; complex (lyas 99.8 1.3E-18 4.4E-23 134.2 13.6 85 69-153 204-298 (402)
136 2hjg_A GTP-binding protein ENG 99.8 1.4E-19 4.7E-24 141.7 8.0 112 39-155 4-127 (436)
137 1zcb_A G alpha I/13; GTP-bindi 99.8 4.8E-19 1.6E-23 135.4 10.7 86 68-153 187-282 (362)
138 3b1v_A Ferrous iron uptake tra 99.8 4.3E-19 1.5E-23 131.0 9.7 110 37-155 2-123 (272)
139 4dhe_A Probable GTP-binding pr 99.8 2.8E-19 9.7E-24 127.6 8.2 115 35-154 26-159 (223)
140 2e87_A Hypothetical protein PH 99.8 1.2E-17 4.3E-22 127.5 17.2 118 35-154 164-295 (357)
141 2xtp_A GTPase IMAP family memb 99.8 6.9E-18 2.4E-22 123.4 14.2 118 35-154 19-154 (260)
142 1lnz_A SPO0B-associated GTP-bi 99.8 1.6E-18 5.3E-23 131.7 9.8 116 39-154 159-289 (342)
143 3sjy_A Translation initiation 99.8 5.6E-18 1.9E-22 131.3 12.9 118 34-154 4-144 (403)
144 4dcu_A GTP-binding protein ENG 99.8 5.4E-19 1.8E-23 139.0 6.6 113 38-155 23-147 (456)
145 3geh_A MNME, tRNA modification 99.8 1.9E-18 6.4E-23 135.9 9.0 114 37-157 223-348 (462)
146 3tr5_A RF-3, peptide chain rel 99.8 1.1E-17 3.7E-22 133.5 13.3 114 37-155 12-150 (528)
147 1xzp_A Probable tRNA modificat 99.8 2.6E-18 9E-23 135.6 9.3 110 38-154 243-365 (482)
148 4dcu_A GTP-binding protein ENG 99.8 5.5E-18 1.9E-22 133.3 10.9 117 35-156 192-323 (456)
149 3qq5_A Small GTP-binding prote 99.7 2.9E-18 9.9E-23 133.4 8.6 116 35-157 31-158 (423)
150 1ega_A Protein (GTP-binding pr 99.7 1.1E-17 3.8E-22 125.1 11.4 112 36-153 6-130 (301)
151 2xtz_A Guanine nucleotide-bind 99.7 5.1E-18 1.7E-22 129.3 9.0 74 80-153 181-264 (354)
152 2qtf_A Protein HFLX, GTP-bindi 99.7 4.4E-17 1.5E-21 124.7 13.9 115 38-154 178-307 (364)
153 2aka_B Dynamin-1; fusion prote 99.7 6.2E-17 2.1E-21 120.3 14.3 130 23-156 10-209 (299)
154 1mky_A Probable GTP-binding pr 99.7 2.8E-17 9.5E-22 128.7 12.9 115 36-155 178-308 (439)
155 3t5d_A Septin-7; GTP-binding p 99.7 3.7E-17 1.3E-21 120.6 12.8 114 36-154 6-159 (274)
156 3p26_A Elongation factor 1 alp 99.7 1.7E-17 5.9E-22 131.3 11.7 118 35-154 30-186 (483)
157 3j2k_7 ERF3, eukaryotic polype 99.7 3.3E-17 1.1E-21 128.3 12.7 115 35-153 14-169 (439)
158 1dar_A EF-G, elongation factor 99.7 2.8E-17 9.4E-22 134.9 12.7 117 34-155 8-145 (691)
159 1jny_A EF-1-alpha, elongation 99.7 1.9E-17 6.4E-22 129.6 11.2 115 36-154 4-159 (435)
160 3izq_1 HBS1P, elongation facto 99.7 5.8E-18 2E-22 137.2 8.4 116 35-153 164-319 (611)
161 1zun_B Sulfate adenylate trans 99.7 5.8E-17 2E-21 126.7 13.7 115 36-154 22-172 (434)
162 2c78_A Elongation factor TU-A; 99.7 4.2E-17 1.5E-21 126.5 12.3 113 36-153 9-142 (405)
163 1jwy_B Dynamin A GTPase domain 99.7 4E-17 1.4E-21 122.3 11.7 129 25-156 11-215 (315)
164 3izy_P Translation initiation 99.7 8.4E-19 2.9E-23 139.8 1.7 116 36-156 2-121 (537)
165 1s0u_A EIF-2-gamma, translatio 99.7 1.1E-16 3.8E-21 124.2 13.5 115 35-156 5-152 (408)
166 2h5e_A Peptide chain release f 99.7 9.9E-17 3.4E-21 128.0 13.3 115 36-155 11-150 (529)
167 3cb4_D GTP-binding protein LEP 99.7 4.3E-17 1.5E-21 131.5 11.1 115 36-155 2-139 (599)
168 2ywe_A GTP-binding protein LEP 99.7 6.1E-17 2.1E-21 130.6 11.5 115 36-155 4-141 (600)
169 1g7s_A Translation initiation 99.7 1.9E-17 6.4E-22 133.6 8.5 111 36-154 3-137 (594)
170 1d2e_A Elongation factor TU (E 99.7 4.2E-17 1.4E-21 126.2 10.1 112 37-153 2-133 (397)
171 2xex_A Elongation factor G; GT 99.7 1.4E-16 4.7E-21 130.9 13.6 116 35-155 7-143 (693)
172 1kk1_A EIF2gamma; initiation o 99.7 1E-16 3.5E-21 124.5 11.4 114 34-154 6-152 (410)
173 1f60_A Elongation factor EEF1A 99.7 7.2E-17 2.5E-21 127.0 10.4 113 37-153 6-159 (458)
174 1zo1_I IF2, translation initia 99.7 6E-18 2E-22 133.9 4.0 114 36-154 2-118 (501)
175 1wb1_A Translation elongation 99.7 7.4E-17 2.5E-21 127.6 9.7 109 37-153 18-139 (482)
176 2elf_A Protein translation elo 99.7 8.1E-17 2.8E-21 123.5 9.6 101 40-151 23-125 (370)
177 1r5b_A Eukaryotic peptide chai 99.7 1.8E-17 6.2E-22 130.7 5.4 114 36-153 41-195 (467)
178 2rdo_7 EF-G, elongation factor 99.7 5.8E-16 2E-20 127.3 14.3 116 35-155 7-150 (704)
179 1n0u_A EF-2, elongation factor 99.7 9.3E-17 3.2E-21 134.2 9.7 114 35-153 16-164 (842)
180 2qpt_A EH domain-containing pr 99.7 1.3E-16 4.4E-21 127.9 9.8 115 36-154 63-233 (550)
181 2j69_A Bacterial dynamin-like 99.7 9.6E-17 3.3E-21 131.8 8.5 116 35-154 66-245 (695)
182 3t34_A Dynamin-related protein 99.7 5.2E-16 1.8E-20 118.6 11.8 73 81-156 135-220 (360)
183 2qag_A Septin-2, protein NEDD5 99.7 1.5E-16 5.1E-21 121.7 7.1 114 36-154 35-189 (361)
184 1pui_A ENGB, probable GTP-bind 99.6 1.1E-15 3.9E-20 107.8 9.3 113 33-153 21-151 (210)
185 2dy1_A Elongation factor G; tr 99.6 5.3E-15 1.8E-19 121.0 13.7 113 35-152 6-139 (665)
186 3mca_A HBS1, elongation factor 99.6 5E-17 1.7E-21 131.3 1.1 113 37-153 176-329 (592)
187 3avx_A Elongation factor TS, e 99.6 1.3E-15 4.4E-20 129.3 8.9 114 35-153 293-426 (1289)
188 1wxq_A GTP-binding protein; st 99.6 3E-15 1E-19 115.7 6.1 80 39-118 1-114 (397)
189 2x2e_A Dynamin-1; nitration, h 99.6 3.3E-14 1.1E-18 108.4 11.7 117 36-156 29-214 (353)
190 3vqt_A RF-3, peptide chain rel 99.6 9.5E-14 3.2E-18 111.3 14.3 116 36-156 29-169 (548)
191 4a9a_A Ribosome-interacting GT 99.5 1.2E-13 4.3E-18 105.7 11.3 114 38-153 72-196 (376)
192 1jal_A YCHF protein; nucleotid 99.5 2E-13 6.7E-18 104.1 12.1 80 38-117 2-108 (363)
193 1udx_A The GTP-binding protein 99.5 1.4E-13 4.9E-18 106.8 11.5 115 39-154 158-284 (416)
194 2qag_C Septin-7; cell cycle, c 99.4 4E-13 1.4E-17 104.3 10.0 114 35-154 28-182 (418)
195 4fn5_A EF-G 1, elongation fact 99.4 3.2E-12 1.1E-16 105.4 13.7 115 36-155 11-153 (709)
196 3j25_A Tetracycline resistance 99.4 1.8E-13 6.1E-18 111.5 3.8 113 39-156 3-136 (638)
197 3zvr_A Dynamin-1; hydrolase, D 99.4 2.3E-11 7.8E-16 100.3 14.9 130 23-156 35-234 (772)
198 2qnr_A Septin-2, protein NEDD5 99.4 1.2E-12 3.9E-17 97.9 6.6 114 35-154 15-170 (301)
199 2dby_A GTP-binding protein; GD 99.4 6.9E-12 2.4E-16 95.9 11.1 77 39-117 2-111 (368)
200 3p32_A Probable GTPase RV1496/ 99.3 8.4E-13 2.9E-17 100.7 5.5 116 26-153 67-231 (355)
201 2p67_A LAO/AO transport system 99.3 8.5E-13 2.9E-17 100.2 5.2 118 25-154 43-209 (341)
202 2ohf_A Protein OLA1, GTP-bindi 99.3 1.8E-12 6.3E-17 99.7 6.6 88 33-120 17-131 (396)
203 2www_A Methylmalonic aciduria 99.3 1.4E-11 4.7E-16 93.8 9.3 107 35-153 71-226 (349)
204 1u0l_A Probable GTPase ENGC; p 99.2 1.8E-11 6.3E-16 91.3 7.3 96 53-154 32-130 (301)
205 2qm8_A GTPase/ATPase; G protei 99.1 3.6E-11 1.2E-15 91.1 5.5 117 25-153 42-207 (337)
206 1yrb_A ATP(GTP)binding protein 99.1 5.1E-11 1.7E-15 86.7 5.4 69 82-154 109-186 (262)
207 2wsm_A Hydrogenase expression/ 99.1 5E-11 1.7E-15 84.6 4.7 105 37-153 29-168 (221)
208 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 5.1E-10 1.7E-14 86.2 9.4 84 34-117 16-127 (392)
209 2qag_B Septin-6, protein NEDD5 99.0 7.7E-09 2.6E-13 80.3 11.6 111 38-154 42-191 (427)
210 3ec1_A YQEH GTPase; atnos1, at 98.9 1.6E-10 5.5E-15 88.5 1.3 111 38-154 162-289 (369)
211 2j37_W Signal recognition part 98.9 2.9E-08 1E-12 78.7 12.7 111 36-154 99-255 (504)
212 3sop_A Neuronal-specific septi 98.9 4.2E-09 1.4E-13 77.4 7.3 111 38-154 2-155 (270)
213 3h2y_A GTPase family protein; 98.9 7.5E-10 2.6E-14 84.8 2.6 110 38-153 160-287 (368)
214 3l82_B F-box only protein 4; T 98.8 1.3E-09 4.5E-14 76.8 2.7 70 90-160 110-184 (227)
215 3cnl_A YLQF, putative uncharac 98.8 2.7E-09 9.3E-14 78.1 3.2 56 39-95 100-157 (262)
216 1puj_A YLQF, conserved hypothe 98.8 5.1E-09 1.7E-13 77.4 4.4 59 35-94 117-177 (282)
217 2hf9_A Probable hydrogenase ni 98.7 1.4E-10 4.8E-15 82.5 -6.1 26 37-62 37-62 (226)
218 3l2o_B F-box only protein 4; s 98.6 9.9E-09 3.4E-13 75.6 0.7 71 89-160 194-269 (312)
219 1tq4_A IIGP1, interferon-induc 98.5 1.7E-07 5.9E-12 72.6 7.2 108 36-152 67-188 (413)
220 1f5n_A Interferon-induced guan 98.5 1.9E-07 6.3E-12 75.4 6.9 61 35-95 35-104 (592)
221 2yv5_A YJEQ protein; hydrolase 98.5 1.9E-07 6.3E-12 69.6 5.9 59 92-154 66-125 (302)
222 3szr_A Interferon-induced GTP- 98.4 2E-07 7E-12 75.6 5.6 23 40-62 47-69 (608)
223 2v3c_C SRP54, signal recogniti 98.4 7.7E-07 2.6E-11 69.4 7.6 109 37-153 98-252 (432)
224 3dm5_A SRP54, signal recogniti 98.4 2.2E-06 7.6E-11 66.9 9.8 110 37-153 99-253 (443)
225 3kl4_A SRP54, signal recogniti 98.1 6.7E-06 2.3E-10 64.1 6.8 109 37-152 96-251 (433)
226 1j8m_F SRP54, signal recogniti 98.1 8.9E-06 3E-10 60.4 6.9 108 38-153 98-253 (297)
227 1bif_A 6-phosphofructo-2-kinas 98.0 4.6E-07 1.6E-11 71.3 -1.7 95 36-131 37-145 (469)
228 3q5d_A Atlastin-1; G protein, 97.8 4.2E-05 1.4E-09 59.8 7.1 26 35-60 64-89 (447)
229 1z6g_A Guanylate kinase; struc 97.8 7.9E-06 2.7E-10 57.9 2.7 35 27-61 12-46 (218)
230 3c8u_A Fructokinase; YP_612366 97.8 2.2E-05 7.5E-10 55.0 4.7 26 35-60 19-44 (208)
231 2v9p_A Replication protein E1; 97.8 1.3E-05 4.4E-10 59.8 3.3 46 16-61 103-149 (305)
232 2xxa_A Signal recognition part 97.8 0.00028 9.4E-09 55.1 10.9 109 37-153 99-254 (433)
233 1ye8_A Protein THEP1, hypothet 97.8 1.4E-05 4.8E-10 54.9 3.0 23 40-62 2-24 (178)
234 1lvg_A Guanylate kinase, GMP k 97.7 1.3E-05 4.5E-10 55.9 2.6 23 38-60 4-26 (198)
235 1kgd_A CASK, peripheral plasma 97.7 2.2E-05 7.4E-10 53.8 3.3 24 38-61 5-28 (180)
236 3aez_A Pantothenate kinase; tr 97.7 2.6E-05 8.8E-10 58.3 3.7 26 35-60 87-112 (312)
237 1sq5_A Pantothenate kinase; P- 97.7 1.8E-05 6.2E-10 59.0 2.8 25 36-60 78-102 (308)
238 1zp6_A Hypothetical protein AT 97.7 3.6E-05 1.2E-09 52.9 3.8 25 37-61 8-32 (191)
239 2jeo_A Uridine-cytidine kinase 97.6 3E-05 1E-09 55.7 3.3 35 26-60 13-47 (245)
240 3h2y_A GTPase family protein; 97.6 2.2E-05 7.7E-10 59.9 2.8 58 91-155 55-112 (368)
241 3tr0_A Guanylate kinase, GMP k 97.6 3.1E-05 1.1E-09 53.7 3.3 25 37-61 6-30 (205)
242 1s96_A Guanylate kinase, GMP k 97.6 3.2E-05 1.1E-09 54.9 3.2 29 34-62 12-40 (219)
243 1htw_A HI0065; nucleotide-bind 97.6 6.8E-05 2.3E-09 50.5 4.6 36 27-62 22-57 (158)
244 3a00_A Guanylate kinase, GMP k 97.6 2.8E-05 9.7E-10 53.5 2.6 22 40-61 3-24 (186)
245 2p5t_B PEZT; postsegregational 97.6 9.9E-05 3.4E-09 53.3 5.6 27 34-60 28-54 (253)
246 2x8a_A Nuclear valosin-contain 97.6 0.00011 3.9E-09 53.8 6.0 35 25-61 33-67 (274)
247 1puj_A YLQF, conserved hypothe 97.6 5.2E-05 1.8E-09 55.8 4.2 62 86-154 3-65 (282)
248 4gp7_A Metallophosphoesterase; 97.6 3.5E-05 1.2E-09 52.4 2.9 23 37-59 8-30 (171)
249 1znw_A Guanylate kinase, GMP k 97.6 3.8E-05 1.3E-09 53.7 3.1 28 34-61 16-43 (207)
250 1odf_A YGR205W, hypothetical 3 97.6 0.0001 3.6E-09 54.5 5.5 27 33-59 26-52 (290)
251 3asz_A Uridine kinase; cytidin 97.5 5.1E-05 1.7E-09 53.0 3.1 25 36-60 4-28 (211)
252 1gvn_B Zeta; postsegregational 97.5 0.00022 7.4E-09 52.6 6.6 27 34-60 29-55 (287)
253 1ixz_A ATP-dependent metallopr 97.5 0.00017 5.9E-09 51.8 5.9 34 27-62 40-73 (254)
254 3tif_A Uncharacterized ABC tra 97.5 6.5E-05 2.2E-09 53.8 3.5 32 31-62 24-55 (235)
255 2pcj_A ABC transporter, lipopr 97.5 6E-05 2E-09 53.6 3.3 31 32-62 24-54 (224)
256 3ec1_A YQEH GTPase; atnos1, at 97.5 3.1E-05 1.1E-09 59.2 1.8 57 91-154 57-113 (369)
257 3tau_A Guanylate kinase, GMP k 97.5 7.7E-05 2.6E-09 52.3 3.7 26 37-62 7-32 (208)
258 2eyu_A Twitching motility prot 97.5 8.7E-05 3E-09 54.0 4.0 33 27-61 16-48 (261)
259 2j41_A Guanylate kinase; GMP, 97.5 7.3E-05 2.5E-09 51.9 3.3 26 37-62 5-30 (207)
260 2onk_A Molybdate/tungstate ABC 97.5 7.5E-05 2.6E-09 53.7 3.3 32 30-62 17-48 (240)
261 3vaa_A Shikimate kinase, SK; s 97.5 8.4E-05 2.9E-09 51.6 3.4 29 32-60 19-47 (199)
262 3gfo_A Cobalt import ATP-bindi 97.4 7.5E-05 2.6E-09 54.8 3.3 33 30-62 26-58 (275)
263 1sgw_A Putative ABC transporte 97.4 7.2E-05 2.4E-09 52.9 3.1 28 35-62 32-59 (214)
264 4g1u_C Hemin import ATP-bindin 97.4 8.3E-05 2.8E-09 54.3 3.4 32 31-62 30-61 (266)
265 3ney_A 55 kDa erythrocyte memb 97.4 9.2E-05 3.2E-09 51.7 3.4 25 37-61 18-42 (197)
266 2ff7_A Alpha-hemolysin translo 97.4 8.2E-05 2.8E-09 53.7 3.2 31 32-62 29-59 (247)
267 1g6h_A High-affinity branched- 97.4 3.6E-05 1.2E-09 55.9 1.3 35 28-62 23-57 (257)
268 2qt1_A Nicotinamide riboside k 97.4 0.00012 4.2E-09 51.0 4.0 31 31-61 14-44 (207)
269 1iy2_A ATP-dependent metallopr 97.4 0.00025 8.4E-09 51.8 5.8 34 27-62 64-97 (278)
270 2cbz_A Multidrug resistance-as 97.4 9.6E-05 3.3E-09 53.0 3.5 31 32-62 25-55 (237)
271 1ex7_A Guanylate kinase; subst 97.4 8E-05 2.8E-09 51.5 3.0 21 41-61 4-24 (186)
272 1mv5_A LMRA, multidrug resista 97.4 0.00011 3.6E-09 53.0 3.7 33 30-62 20-52 (243)
273 2pze_A Cystic fibrosis transme 97.4 9.2E-05 3.1E-09 52.8 3.3 29 34-62 30-58 (229)
274 1kag_A SKI, shikimate kinase I 97.4 7.9E-05 2.7E-09 50.3 2.8 23 39-61 5-27 (173)
275 4eun_A Thermoresistant glucoki 97.4 9.3E-05 3.2E-09 51.4 3.2 24 37-60 28-51 (200)
276 1b0u_A Histidine permease; ABC 97.4 0.00011 3.6E-09 53.6 3.6 33 30-62 24-56 (262)
277 1rz3_A Hypothetical protein rb 97.4 0.00016 5.6E-09 50.3 4.4 26 35-60 19-44 (201)
278 1ji0_A ABC transporter; ATP bi 97.4 9.7E-05 3.3E-09 53.1 3.2 32 31-62 25-56 (240)
279 3tlx_A Adenylate kinase 2; str 97.4 0.00011 3.7E-09 52.8 3.5 26 35-60 26-51 (243)
280 2qi9_C Vitamin B12 import ATP- 97.4 0.0001 3.4E-09 53.4 3.3 34 29-62 17-50 (249)
281 3lnc_A Guanylate kinase, GMP k 97.4 5.3E-05 1.8E-09 53.8 1.8 32 30-61 19-51 (231)
282 2qor_A Guanylate kinase; phosp 97.4 0.00011 3.6E-09 51.3 3.3 26 35-60 9-34 (204)
283 2ihy_A ABC transporter, ATP-bi 97.4 0.0001 3.5E-09 54.2 3.3 33 30-62 39-71 (279)
284 2olj_A Amino acid ABC transpor 97.4 0.00012 4.1E-09 53.4 3.6 33 30-62 42-74 (263)
285 2rcn_A Probable GTPase ENGC; Y 97.4 0.0001 3.5E-09 56.1 3.3 25 39-63 216-240 (358)
286 3nwj_A ATSK2; P loop, shikimat 97.4 5E-05 1.7E-09 55.0 1.5 46 15-60 18-70 (250)
287 2d2e_A SUFC protein; ABC-ATPas 97.4 0.00011 3.7E-09 53.2 3.3 30 32-61 23-52 (250)
288 2bbw_A Adenylate kinase 4, AK4 97.4 0.00012 4.1E-09 52.5 3.5 22 38-59 27-48 (246)
289 2bdt_A BH3686; alpha-beta prot 97.4 0.0001 3.4E-09 50.6 2.9 21 40-60 4-24 (189)
290 2ghi_A Transport protein; mult 97.4 0.00013 4.3E-09 53.1 3.5 33 30-62 38-70 (260)
291 1vpl_A ABC transporter, ATP-bi 97.4 0.00013 4.4E-09 53.0 3.6 31 32-62 35-65 (256)
292 3b85_A Phosphate starvation-in 97.4 7.8E-05 2.7E-09 52.5 2.3 24 38-61 22-45 (208)
293 3fvq_A Fe(3+) IONS import ATP- 97.4 0.00027 9.1E-09 53.8 5.4 32 31-62 23-54 (359)
294 2bbs_A Cystic fibrosis transme 97.4 1.5E-05 5.1E-10 59.0 -1.5 28 35-62 61-88 (290)
295 1knq_A Gluconate kinase; ALFA/ 97.3 0.00017 5.7E-09 48.8 3.9 24 37-60 7-30 (175)
296 2ixe_A Antigen peptide transpo 97.3 0.00013 4.5E-09 53.4 3.5 34 29-62 36-69 (271)
297 3lw7_A Adenylate kinase relate 97.3 0.00013 4.4E-09 49.0 3.2 19 40-58 3-21 (179)
298 2i3b_A HCR-ntpase, human cance 97.3 9.5E-05 3.2E-09 51.3 2.6 22 40-61 3-24 (189)
299 2rhm_A Putative kinase; P-loop 97.3 0.00016 5.5E-09 49.5 3.8 25 36-60 3-27 (193)
300 2nq2_C Hypothetical ABC transp 97.3 0.00012 4.1E-09 53.0 3.2 31 32-62 25-55 (253)
301 1ly1_A Polynucleotide kinase; 97.3 0.00014 4.8E-09 49.2 3.4 22 39-60 3-24 (181)
302 4dzz_A Plasmid partitioning pr 97.3 0.0013 4.6E-08 45.3 8.5 68 81-152 75-143 (206)
303 3uie_A Adenylyl-sulfate kinase 97.3 0.00014 4.6E-09 50.6 3.4 25 36-60 23-47 (200)
304 1cke_A CK, MSSA, protein (cyti 97.3 0.00013 4.3E-09 51.5 3.3 23 38-60 5-27 (227)
305 3nh6_A ATP-binding cassette SU 97.3 0.00015 5E-09 54.1 3.7 27 36-62 78-104 (306)
306 3tui_C Methionine import ATP-b 97.3 0.00026 8.7E-09 54.0 5.0 33 30-62 46-78 (366)
307 2zu0_C Probable ATP-dependent 97.3 0.00015 5.1E-09 52.9 3.6 31 31-61 39-69 (267)
308 3tqc_A Pantothenate kinase; bi 97.3 0.00041 1.4E-08 52.0 6.0 25 35-59 89-113 (321)
309 3kb2_A SPBC2 prophage-derived 97.3 0.00013 4.5E-09 48.9 3.1 21 40-60 3-23 (173)
310 2pjz_A Hypothetical protein ST 97.3 0.00014 4.8E-09 53.0 3.3 28 34-62 27-54 (263)
311 2yz2_A Putative ABC transporte 97.3 0.00016 5.6E-09 52.7 3.5 32 31-62 26-57 (266)
312 1g29_1 MALK, maltose transport 97.3 0.00041 1.4E-08 53.1 5.7 29 34-62 25-53 (372)
313 2ehv_A Hypothetical protein PH 97.3 0.00014 4.8E-09 51.8 3.0 26 34-59 26-51 (251)
314 1y63_A LMAJ004144AAA protein; 97.3 0.00021 7.2E-09 48.9 3.8 27 35-61 7-33 (184)
315 3b9q_A Chloroplast SRP recepto 97.3 0.00042 1.4E-08 51.5 5.6 26 35-60 97-122 (302)
316 2npi_A Protein CLP1; CLP1-PCF1 97.3 0.00017 5.7E-09 56.7 3.4 45 14-62 118-162 (460)
317 1u0l_A Probable GTPase ENGC; p 97.2 0.00017 5.7E-09 53.6 3.2 24 39-62 170-193 (301)
318 1jjv_A Dephospho-COA kinase; P 97.2 0.0002 6.9E-09 49.7 3.5 22 39-60 3-24 (206)
319 4a74_A DNA repair and recombin 97.2 0.00014 4.7E-09 51.2 2.6 29 33-61 20-48 (231)
320 3cm0_A Adenylate kinase; ATP-b 97.2 0.00022 7.6E-09 48.6 3.6 23 37-59 3-25 (186)
321 3ec2_A DNA replication protein 97.2 0.0003 1E-08 47.9 4.1 25 37-61 37-61 (180)
322 1qhx_A CPT, protein (chloramph 97.2 0.00018 6.1E-09 48.7 2.9 22 39-60 4-25 (178)
323 1t9h_A YLOQ, probable GTPase E 97.2 5.4E-05 1.9E-09 56.4 0.3 25 38-62 173-197 (307)
324 2if2_A Dephospho-COA kinase; a 97.2 0.00018 6.2E-09 49.9 2.9 21 40-60 3-23 (204)
325 2og2_A Putative signal recogni 97.2 0.00052 1.8E-08 52.2 5.6 26 35-60 154-179 (359)
326 3t61_A Gluconokinase; PSI-biol 97.2 0.0002 6.7E-09 49.7 3.0 23 38-60 18-40 (202)
327 2cdn_A Adenylate kinase; phosp 97.2 0.00029 9.8E-09 48.8 3.8 26 35-60 17-42 (201)
328 1lw7_A Transcriptional regulat 97.2 0.0002 6.7E-09 54.5 3.0 33 30-62 160-194 (365)
329 1kht_A Adenylate kinase; phosp 97.2 0.00025 8.5E-09 48.4 3.3 21 39-59 4-24 (192)
330 3fb4_A Adenylate kinase; psych 97.2 0.00022 7.7E-09 49.9 3.1 20 40-59 2-21 (216)
331 3b5x_A Lipid A export ATP-bind 97.2 0.00029 1E-08 56.9 4.1 35 28-62 359-393 (582)
332 2wwf_A Thymidilate kinase, put 97.2 0.00029 1E-08 49.0 3.7 26 35-60 7-32 (212)
333 2yv5_A YJEQ protein; hydrolase 97.2 0.00022 7.6E-09 52.9 3.2 23 39-62 166-188 (302)
334 3dl0_A Adenylate kinase; phosp 97.2 0.00025 8.5E-09 49.7 3.1 21 40-60 2-22 (216)
335 1rj9_A FTSY, signal recognitio 97.2 0.00029 1E-08 52.4 3.6 23 37-59 101-123 (304)
336 1z47_A CYSA, putative ABC-tran 97.1 0.00022 7.6E-09 54.2 3.0 32 31-62 34-65 (355)
337 1nks_A Adenylate kinase; therm 97.1 0.00027 9.1E-09 48.3 3.2 21 40-60 3-23 (194)
338 1tev_A UMP-CMP kinase; ploop, 97.1 0.0003 1E-08 48.1 3.4 22 38-59 3-24 (196)
339 2gza_A Type IV secretion syste 97.1 0.0001 3.5E-09 56.2 1.0 32 31-62 168-199 (361)
340 3jvv_A Twitching mobility prot 97.1 0.00023 8E-09 54.1 3.0 22 40-61 125-146 (356)
341 2yyz_A Sugar ABC transporter, 97.1 0.00024 8.2E-09 54.1 3.0 32 31-62 22-53 (359)
342 3rlf_A Maltose/maltodextrin im 97.1 0.00025 8.5E-09 54.4 3.1 32 31-62 22-53 (381)
343 4e22_A Cytidylate kinase; P-lo 97.1 0.00032 1.1E-08 50.6 3.5 24 36-59 25-48 (252)
344 2jaq_A Deoxyguanosine kinase; 97.1 0.0003 1E-08 48.5 3.3 21 40-60 2-22 (205)
345 2it1_A 362AA long hypothetical 97.1 0.00025 8.7E-09 54.0 3.1 32 31-62 22-53 (362)
346 3trf_A Shikimate kinase, SK; a 97.1 0.0003 1E-08 47.9 3.2 23 38-60 5-27 (185)
347 1oxx_K GLCV, glucose, ABC tran 97.1 0.00034 1.2E-08 53.1 3.7 33 30-62 23-55 (353)
348 2plr_A DTMP kinase, probable t 97.1 0.00035 1.2E-08 48.5 3.5 23 38-60 4-26 (213)
349 1svm_A Large T antigen; AAA+ f 97.1 0.00035 1.2E-08 53.5 3.8 35 26-60 157-191 (377)
350 2yvu_A Probable adenylyl-sulfa 97.1 0.00047 1.6E-08 47.1 4.1 27 34-60 9-35 (186)
351 1aky_A Adenylate kinase; ATP:A 97.1 0.00033 1.1E-08 49.3 3.4 23 38-60 4-26 (220)
352 1uf9_A TT1252 protein; P-loop, 97.1 0.00037 1.3E-08 48.0 3.6 26 36-61 6-31 (203)
353 1np6_A Molybdopterin-guanine d 97.1 0.0003 1E-08 48.1 3.0 23 39-61 7-29 (174)
354 1v43_A Sugar-binding transport 97.1 0.00028 9.5E-09 54.0 3.1 33 30-62 29-61 (372)
355 2f1r_A Molybdopterin-guanine d 97.1 0.00011 3.8E-09 50.1 0.8 22 40-61 4-25 (171)
356 1zak_A Adenylate kinase; ATP:A 97.1 0.00029 9.8E-09 49.6 2.9 23 37-59 4-26 (222)
357 3e70_C DPA, signal recognition 97.1 0.00036 1.2E-08 52.4 3.6 25 36-60 127-151 (328)
358 2pt7_A CAG-ALFA; ATPase, prote 97.1 0.00028 9.5E-09 53.1 3.0 26 37-62 170-195 (330)
359 2vp4_A Deoxynucleoside kinase; 97.1 0.00035 1.2E-08 49.6 3.3 28 34-61 16-43 (230)
360 2v54_A DTMP kinase, thymidylat 97.1 0.00041 1.4E-08 47.9 3.6 25 37-61 3-27 (204)
361 1via_A Shikimate kinase; struc 97.1 0.0003 1E-08 47.6 2.8 21 40-60 6-26 (175)
362 3iij_A Coilin-interacting nucl 97.1 0.00039 1.3E-08 47.2 3.4 23 37-59 10-32 (180)
363 2c95_A Adenylate kinase 1; tra 97.1 0.0004 1.4E-08 47.6 3.4 23 37-59 8-30 (196)
364 3sr0_A Adenylate kinase; phosp 97.1 0.00035 1.2E-08 49.0 3.2 21 40-60 2-22 (206)
365 1zd8_A GTP:AMP phosphotransfer 97.1 0.00035 1.2E-08 49.4 3.2 23 37-59 6-28 (227)
366 1ukz_A Uridylate kinase; trans 97.0 0.00051 1.8E-08 47.5 3.9 24 36-59 13-36 (203)
367 1nn5_A Similar to deoxythymidy 97.0 0.00042 1.4E-08 48.2 3.4 24 37-60 8-31 (215)
368 1t9h_A YLOQ, probable GTPase E 97.0 0.0011 3.6E-08 49.5 5.7 55 96-154 77-132 (307)
369 1vht_A Dephospho-COA kinase; s 97.0 0.00049 1.7E-08 48.3 3.6 24 37-60 3-26 (218)
370 2oap_1 GSPE-2, type II secreti 97.0 0.00016 5.5E-09 57.5 1.2 25 38-62 260-284 (511)
371 2kjq_A DNAA-related protein; s 97.0 0.00026 9E-09 47.0 2.1 26 37-62 35-60 (149)
372 2ewv_A Twitching motility prot 97.0 0.0004 1.4E-08 53.1 3.3 26 36-61 134-159 (372)
373 1jbk_A CLPB protein; beta barr 97.0 0.0012 4E-08 44.6 5.3 24 38-61 43-66 (195)
374 3b60_A Lipid A export ATP-bind 97.0 0.00077 2.6E-08 54.4 5.0 24 39-62 370-393 (582)
375 3d31_A Sulfate/molybdate ABC t 97.0 0.00023 7.7E-09 54.0 1.7 32 31-62 19-50 (348)
376 2yhs_A FTSY, cell division pro 97.0 0.00047 1.6E-08 54.5 3.6 27 34-60 289-315 (503)
377 1p9r_A General secretion pathw 97.0 0.00034 1.2E-08 54.3 2.8 26 36-61 165-190 (418)
378 3gd7_A Fusion complex of cysti 97.0 0.00037 1.3E-08 53.6 2.9 32 31-62 40-71 (390)
379 3qf4_B Uncharacterized ABC tra 97.0 0.00032 1.1E-08 56.8 2.7 27 36-62 379-405 (598)
380 1e4v_A Adenylate kinase; trans 97.0 0.00044 1.5E-08 48.4 3.1 21 40-60 2-22 (214)
381 2ze6_A Isopentenyl transferase 97.0 0.00041 1.4E-08 50.1 3.0 21 40-60 3-23 (253)
382 3umf_A Adenylate kinase; rossm 97.0 0.00073 2.5E-08 47.8 4.2 21 40-60 31-51 (217)
383 1qf9_A UMP/CMP kinase, protein 97.0 0.00064 2.2E-08 46.3 3.8 23 38-60 6-28 (194)
384 2pt5_A Shikimate kinase, SK; a 97.0 0.00054 1.8E-08 45.8 3.2 21 40-60 2-22 (168)
385 3be4_A Adenylate kinase; malar 96.9 0.00048 1.6E-08 48.4 3.0 23 38-60 5-27 (217)
386 3kta_A Chromosome segregation 96.9 0.00043 1.5E-08 47.0 2.7 21 40-60 28-48 (182)
387 2pez_A Bifunctional 3'-phospho 96.9 0.00064 2.2E-08 46.1 3.5 24 37-60 4-27 (179)
388 1cr0_A DNA primase/helicase; R 96.9 0.00056 1.9E-08 50.3 3.4 34 28-61 25-58 (296)
389 2bwj_A Adenylate kinase 5; pho 96.9 0.00056 1.9E-08 47.0 3.2 23 38-60 12-34 (199)
390 4fcw_A Chaperone protein CLPB; 96.9 0.0019 6.5E-08 47.5 6.1 24 38-61 47-70 (311)
391 2yl4_A ATP-binding cassette SU 96.9 0.0008 2.7E-08 54.5 4.3 25 38-62 370-394 (595)
392 2f6r_A COA synthase, bifunctio 96.9 0.00082 2.8E-08 49.3 4.0 24 36-59 73-96 (281)
393 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.00073 2.5E-08 47.4 3.6 27 34-60 19-45 (235)
394 1tue_A Replication protein E1; 96.9 0.0006 2E-08 47.9 3.0 28 34-61 54-81 (212)
395 3n70_A Transport activator; si 96.9 0.00049 1.7E-08 45.3 2.5 26 37-62 23-48 (145)
396 2vli_A Antibiotic resistance p 96.9 0.00042 1.5E-08 47.0 2.2 23 38-60 5-27 (183)
397 3r20_A Cytidylate kinase; stru 96.9 0.00063 2.2E-08 48.7 3.2 23 37-59 8-30 (233)
398 1uj2_A Uridine-cytidine kinase 96.9 0.0007 2.4E-08 48.7 3.4 25 36-60 20-44 (252)
399 4a82_A Cystic fibrosis transme 96.9 0.00072 2.5E-08 54.5 3.8 24 39-62 368-391 (578)
400 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00072 2.5E-08 48.9 3.5 23 38-60 4-26 (260)
401 2z0h_A DTMP kinase, thymidylat 96.9 0.0006 2.1E-08 46.7 2.9 21 40-60 2-22 (197)
402 1e6c_A Shikimate kinase; phosp 96.9 0.00064 2.2E-08 45.7 2.9 21 40-60 4-24 (173)
403 3ozx_A RNAse L inhibitor; ATP 96.8 0.0009 3.1E-08 53.6 4.2 28 35-62 22-49 (538)
404 1ak2_A Adenylate kinase isoenz 96.8 0.00079 2.7E-08 47.8 3.5 24 37-60 15-38 (233)
405 1in4_A RUVB, holliday junction 96.8 0.00053 1.8E-08 51.5 2.7 23 39-61 52-74 (334)
406 2pbr_A DTMP kinase, thymidylat 96.8 0.00072 2.5E-08 46.2 3.2 21 40-60 2-22 (195)
407 1yqt_A RNAse L inhibitor; ATP- 96.8 0.00078 2.7E-08 53.9 3.8 29 34-62 43-71 (538)
408 2xb4_A Adenylate kinase; ATP-b 96.8 0.00074 2.5E-08 47.7 3.3 21 40-60 2-22 (223)
409 2iyv_A Shikimate kinase, SK; t 96.8 0.00068 2.3E-08 46.1 2.9 21 40-60 4-24 (184)
410 2p65_A Hypothetical protein PF 96.8 0.0014 4.8E-08 44.1 4.4 24 38-61 43-66 (187)
411 2dpy_A FLII, flagellum-specifi 96.8 0.0011 3.7E-08 51.8 4.3 35 27-62 147-181 (438)
412 1xjc_A MOBB protein homolog; s 96.8 0.00075 2.6E-08 45.9 3.0 23 39-61 5-27 (169)
413 2obl_A ESCN; ATPase, hydrolase 96.8 0.00081 2.8E-08 50.9 3.5 35 27-62 61-95 (347)
414 1zuh_A Shikimate kinase; alpha 96.8 0.00086 2.9E-08 45.0 3.2 22 39-60 8-29 (168)
415 4eaq_A DTMP kinase, thymidylat 96.8 0.0012 4.1E-08 47.0 4.0 26 35-60 23-48 (229)
416 1gtv_A TMK, thymidylate kinase 96.8 0.00026 8.8E-09 49.3 0.5 21 40-60 2-22 (214)
417 1m7g_A Adenylylsulfate kinase; 96.8 0.0011 3.9E-08 46.2 3.7 25 36-60 23-47 (211)
418 1nij_A Hypothetical protein YJ 96.8 0.00052 1.8E-08 51.3 2.0 23 39-61 5-27 (318)
419 2cvh_A DNA repair and recombin 96.7 0.0015 5E-08 45.5 4.1 27 34-60 16-42 (220)
420 1n0w_A DNA repair protein RAD5 96.7 0.00078 2.7E-08 47.7 2.8 29 33-61 19-47 (243)
421 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.00096 3.3E-08 44.3 3.0 19 41-59 26-44 (149)
422 1lv7_A FTSH; alpha/beta domain 96.7 0.0011 3.8E-08 47.6 3.3 24 38-61 45-68 (257)
423 3bk7_A ABC transporter ATP-bin 96.7 0.0012 4.1E-08 53.6 3.8 29 34-62 113-141 (607)
424 3j16_B RLI1P; ribosome recycli 96.7 0.001 3.4E-08 54.1 3.3 27 36-62 101-127 (608)
425 4f4c_A Multidrug resistance pr 96.7 0.00039 1.3E-08 61.1 1.0 26 36-61 1103-1128(1321)
426 3euj_A Chromosome partition pr 96.7 0.00087 3E-08 52.9 2.8 25 35-60 27-51 (483)
427 3bos_A Putative DNA replicatio 96.7 0.0013 4.4E-08 46.3 3.4 25 37-61 51-75 (242)
428 3uk6_A RUVB-like 2; hexameric 96.6 0.003 1E-07 47.6 5.5 29 33-61 65-93 (368)
429 1ltq_A Polynucleotide kinase; 96.6 0.0013 4.5E-08 48.3 3.4 22 39-60 3-24 (301)
430 2chg_A Replication factor C sm 96.6 0.0028 9.5E-08 43.7 4.9 21 41-61 41-61 (226)
431 1q3t_A Cytidylate kinase; nucl 96.6 0.0015 5.2E-08 46.4 3.5 26 35-60 13-38 (236)
432 2grj_A Dephospho-COA kinase; T 96.6 0.0016 5.6E-08 45.1 3.5 25 36-60 10-34 (192)
433 2w58_A DNAI, primosome compone 96.6 0.0013 4.5E-08 45.4 2.9 23 39-61 55-77 (202)
434 3t15_A Ribulose bisphosphate c 96.6 0.0018 6.3E-08 47.6 3.8 27 35-61 33-59 (293)
435 3ozx_A RNAse L inhibitor; ATP 96.6 0.0014 4.7E-08 52.5 3.3 24 39-62 295-318 (538)
436 3qf7_A RAD50; ABC-ATPase, ATPa 96.5 0.0013 4.5E-08 50.0 3.0 22 37-59 23-44 (365)
437 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0015 5E-08 52.4 3.3 25 38-62 312-336 (538)
438 4f4c_A Multidrug resistance pr 96.5 0.00095 3.3E-08 58.7 2.4 28 35-62 441-468 (1321)
439 1nlf_A Regulatory protein REPA 96.5 0.0012 4.2E-08 48.1 2.6 26 35-60 27-52 (279)
440 3qf4_A ABC transporter, ATP-bi 96.5 0.0012 4.2E-08 53.3 2.7 24 39-62 370-393 (587)
441 3bk7_A ABC transporter ATP-bin 96.5 0.0015 5.2E-08 53.0 3.3 24 39-62 383-406 (607)
442 1sxj_E Activator 1 40 kDa subu 96.5 0.0025 8.7E-08 47.7 4.3 20 41-60 39-58 (354)
443 3h4m_A Proteasome-activating n 96.5 0.0019 6.7E-08 46.9 3.4 26 36-61 49-74 (285)
444 1vma_A Cell division protein F 96.5 0.0038 1.3E-07 46.4 5.0 24 37-60 103-126 (306)
445 3pfi_A Holliday junction ATP-d 96.5 0.0029 1E-07 47.1 4.5 25 37-61 54-78 (338)
446 1njg_A DNA polymerase III subu 96.5 0.0017 5.9E-08 45.3 3.0 21 40-60 47-67 (250)
447 3cnl_A YLQF, putative uncharac 96.4 0.00088 3E-08 48.7 1.4 57 89-154 4-61 (262)
448 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.0023 7.9E-08 45.8 3.7 26 36-61 37-62 (262)
449 3zvl_A Bifunctional polynucleo 96.4 0.0025 8.6E-08 49.3 4.1 25 37-61 257-281 (416)
450 3ake_A Cytidylate kinase; CMP 96.4 0.002 7E-08 44.4 3.2 21 40-60 4-24 (208)
451 2px0_A Flagellar biosynthesis 96.4 0.002 7E-08 47.6 3.2 23 37-59 104-126 (296)
452 2qby_A CDC6 homolog 1, cell di 96.4 0.00089 3E-08 50.4 1.3 25 37-61 44-68 (386)
453 1d2n_A N-ethylmaleimide-sensit 96.4 0.0055 1.9E-07 44.3 5.5 27 35-61 61-87 (272)
454 2ce7_A Cell division protein F 96.4 0.0045 1.5E-07 48.8 5.3 22 40-61 51-72 (476)
455 2dhr_A FTSH; AAA+ protein, hex 96.4 0.0025 8.4E-08 50.6 3.8 23 40-62 66-88 (499)
456 3b9p_A CG5977-PA, isoform A; A 96.4 0.0021 7.1E-08 47.1 3.2 25 37-61 53-77 (297)
457 3syl_A Protein CBBX; photosynt 96.4 0.0027 9.1E-08 46.7 3.8 25 36-60 65-89 (309)
458 3j16_B RLI1P; ribosome recycli 96.4 0.002 6.9E-08 52.3 3.3 22 41-62 381-402 (608)
459 2dr3_A UPF0273 protein PH0284; 96.4 0.002 6.8E-08 45.6 2.9 27 33-59 18-44 (247)
460 3co5_A Putative two-component 96.4 0.00067 2.3E-08 44.6 0.3 24 38-61 27-50 (143)
461 3cr8_A Sulfate adenylyltranfer 96.3 0.002 7E-08 51.7 3.1 28 34-61 365-392 (552)
462 3cwq_A Para family chromosome 96.3 0.039 1.3E-06 38.4 9.4 67 81-153 67-134 (209)
463 3cf0_A Transitional endoplasmi 96.3 0.0025 8.6E-08 47.0 3.4 26 36-61 47-72 (301)
464 1a7j_A Phosphoribulokinase; tr 96.3 0.0013 4.3E-08 48.6 1.8 23 37-59 4-26 (290)
465 3hws_A ATP-dependent CLP prote 96.3 0.0065 2.2E-07 45.9 5.7 25 37-61 50-74 (363)
466 2qmh_A HPR kinase/phosphorylas 96.3 0.0024 8.1E-08 44.6 3.0 25 38-62 34-58 (205)
467 3eie_A Vacuolar protein sortin 96.3 0.0052 1.8E-07 45.7 5.1 28 34-61 47-74 (322)
468 2ga8_A Hypothetical 39.9 kDa p 96.3 0.007 2.4E-07 45.9 5.7 25 36-60 22-46 (359)
469 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.006 2E-07 45.5 5.3 26 36-61 43-68 (322)
470 2v1u_A Cell division control p 96.3 0.001 3.6E-08 50.1 1.1 26 36-61 42-67 (387)
471 3d3q_A TRNA delta(2)-isopenten 96.3 0.0024 8.1E-08 48.2 2.9 23 39-61 8-30 (340)
472 3crm_A TRNA delta(2)-isopenten 96.3 0.0028 9.5E-08 47.5 3.3 22 39-60 6-27 (323)
473 1tf7_A KAIC; homohexamer, hexa 96.3 0.0024 8.1E-08 50.9 3.1 31 28-58 28-59 (525)
474 4b4t_K 26S protease regulatory 96.3 0.0052 1.8E-07 47.8 4.9 27 35-61 203-229 (428)
475 3g5u_A MCG1178, multidrug resi 96.3 0.0042 1.4E-07 54.6 4.9 24 39-62 417-440 (1284)
476 2c9o_A RUVB-like 1; hexameric 96.3 0.0071 2.4E-07 47.3 5.7 28 33-60 58-85 (456)
477 3a8t_A Adenylate isopentenyltr 96.2 0.0036 1.2E-07 47.2 3.8 23 39-61 41-63 (339)
478 3qks_A DNA double-strand break 96.2 0.0028 9.5E-08 44.2 3.0 20 40-59 25-44 (203)
479 2qby_B CDC6 homolog 3, cell di 96.2 0.0076 2.6E-07 45.5 5.6 23 39-61 46-68 (384)
480 1l8q_A Chromosomal replication 96.2 0.0046 1.6E-07 45.9 4.2 24 38-61 37-60 (324)
481 1c9k_A COBU, adenosylcobinamid 96.2 0.0032 1.1E-07 43.2 3.1 21 41-61 2-22 (180)
482 3exa_A TRNA delta(2)-isopenten 96.2 0.0036 1.2E-07 46.7 3.6 23 39-61 4-26 (322)
483 3gmt_A Adenylate kinase; ssgci 96.2 0.0033 1.1E-07 44.8 3.3 24 37-60 7-30 (230)
484 3foz_A TRNA delta(2)-isopenten 96.2 0.0042 1.4E-07 46.3 3.8 24 38-61 10-33 (316)
485 1zu4_A FTSY; GTPase, signal re 96.2 0.0083 2.9E-07 44.8 5.4 24 36-59 103-126 (320)
486 2iw3_A Elongation factor 3A; a 96.2 0.0029 9.9E-08 54.0 3.2 23 40-62 463-485 (986)
487 1pzn_A RAD51, DNA repair and r 96.2 0.0028 9.7E-08 47.9 2.9 30 33-62 126-155 (349)
488 4b4t_J 26S protease regulatory 96.1 0.0078 2.7E-07 46.4 5.3 27 35-61 179-205 (405)
489 1sxj_D Activator 1 41 kDa subu 96.1 0.006 2E-07 45.5 4.6 21 41-61 61-81 (353)
490 1fnn_A CDC6P, cell division co 96.1 0.0032 1.1E-07 47.6 3.0 22 40-61 46-67 (389)
491 1ofh_A ATP-dependent HSL prote 96.1 0.0034 1.2E-07 45.9 3.1 24 38-61 50-73 (310)
492 2bjv_A PSP operon transcriptio 96.1 0.0035 1.2E-07 45.2 3.0 25 38-62 29-53 (265)
493 2h92_A Cytidylate kinase; ross 96.1 0.0034 1.1E-07 43.8 2.8 23 38-60 3-25 (219)
494 1sxj_C Activator 1 40 kDa subu 96.1 0.0029 9.9E-08 47.4 2.6 21 41-61 49-69 (340)
495 4ido_A Atlastin-1; GTPase, GTP 96.1 0.018 6.1E-07 45.1 7.1 25 35-59 64-88 (457)
496 4b4t_L 26S protease subunit RP 96.1 0.012 4.2E-07 45.8 6.2 28 34-61 211-238 (437)
497 2iw3_A Elongation factor 3A; a 96.0 0.0018 6.2E-08 55.2 1.4 25 38-62 699-723 (986)
498 2r62_A Cell division protease 96.0 0.0041 1.4E-07 44.8 3.1 22 40-61 46-67 (268)
499 2ocp_A DGK, deoxyguanosine kin 96.0 0.005 1.7E-07 43.8 3.4 24 38-61 2-25 (241)
500 4b4t_M 26S protease regulatory 96.0 0.0049 1.7E-07 48.0 3.6 28 34-61 211-238 (434)
No 1
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=2.8e-28 Score=169.79 Aligned_cols=130 Identities=82% Similarity=1.281 Sum_probs=114.1
Q ss_pred HHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccC
Q psy689 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNT 106 (162)
Q Consensus 27 ~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 106 (162)
+++.......+.++|+++|++|||||||++++.+.....+.|+.+.....+..++..+.+||+||+..+...+..+++.+
T Consensus 5 ~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 84 (181)
T 1fzq_A 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENT 84 (181)
T ss_dssp HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTC
T ss_pred HHHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCC
Confidence 34555555577899999999999999999999998877788888988888888899999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 107 DILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 107 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
|++++|+|+++++++..+..|+..++......+.|+++|+||+|+.+...
T Consensus 85 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~ 134 (181)
T 1fzq_A 85 DILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 134 (181)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC
Confidence 99999999999999999988988887654446899999999999987654
No 2
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.95 E-value=5.1e-27 Score=161.00 Aligned_cols=122 Identities=48% Similarity=0.812 Sum_probs=109.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d 114 (162)
..+.++|+++|++|||||||++++.+.....+.|+.+.....+...+..+.+|||||+..+...+..+++.+|++++|+|
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 83 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVD 83 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEE
Confidence 45679999999999999999999998887778888898888888899999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 115 SADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++++.++.....|+..+.......+.|+++|+||+|+.+...
T Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 125 (171)
T 1upt_A 84 SCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 125 (171)
T ss_dssp TTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC
Confidence 999999999999988887765446899999999999987643
No 3
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.95 E-value=7.8e-28 Score=172.35 Aligned_cols=121 Identities=19% Similarity=0.420 Sum_probs=95.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEE--EEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK--SVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
.+.+||+++|++|||||||++++..+. ...+.||.+..+. .+... .+.+.+|||+|++++..+++.+++.+++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 457999999999999999999999877 4556788775433 33333 378899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
+|||++++++|+.+..|+..+..... +++|++|||||+|+.+.+..
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V 136 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQV 136 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCS
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcc
Confidence 99999999999999999988876543 57999999999999876653
No 4
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.95 E-value=3.5e-27 Score=160.93 Aligned_cols=117 Identities=50% Similarity=0.849 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCCh
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADV 118 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~ 118 (162)
+||+++|++|||||||++++.+..+..+.||.+.....+...+..+.+||+||+..+...+..+++.+|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999988876677888877777888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 119 KRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+++.....|+..+.......+.|+++|+||+|+.+..
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 117 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 117 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC
Confidence 9999999999888776545689999999999997753
No 5
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.95 E-value=2.8e-27 Score=166.00 Aligned_cols=119 Identities=34% Similarity=0.645 Sum_probs=106.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEEC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
.+.++|+++|++|||||||++++.+.....+.++.+.....+..++..+.+|||||+..+...+..+++.+|++++|+|+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 100 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA 100 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEEC
Confidence 45679999999999999999999998877788888888888888899999999999999999998999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 116 ADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++++++..+..|+..+.......+.|+++|+||+|+.+.
T Consensus 101 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (190)
T 1m2o_B 101 ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 139 (190)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred CChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC
Confidence 999999999999988876544468999999999999874
No 6
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.95 E-value=2.6e-27 Score=164.98 Aligned_cols=121 Identities=60% Similarity=1.055 Sum_probs=108.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEEC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
.+.++|+++|++|||||||++++.+.....+.||.+.....+..++..+.+|||||+.++...+..+++.+|++++|+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 95 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEET
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEEC
Confidence 57899999999999999999999988877778888988888888899999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 116 ADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+++.++..+..|+..+.......+.|+++|+||+|+.+...
T Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 136 (186)
T 1ksh_A 96 ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 136 (186)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred cCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC
Confidence 99999999999998887765446899999999999987644
No 7
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.95 E-value=1.5e-27 Score=168.46 Aligned_cols=119 Identities=34% Similarity=0.619 Sum_probs=98.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEEC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
.+.++|+++|++|||||||++++.+.....+.||.+.+...+..++..+.+|||||+..+...+..+++.+|++++|+|+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~ 102 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDC 102 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEET
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEEC
Confidence 45689999999999999999999988877777888877778888889999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 116 ADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+++++|..+..|+..+.......++|+++|+||+|+.+.
T Consensus 103 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 141 (198)
T 1f6b_A 103 ADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA 141 (198)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC
T ss_pred CCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc
Confidence 999999999999988877644468999999999999763
No 8
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.95 E-value=2.9e-27 Score=166.13 Aligned_cols=121 Identities=50% Similarity=0.836 Sum_probs=103.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d 114 (162)
..+.++|+++|++|||||||++++.++....+.||.+.....+...+..+.+||+||++++...+..+++.+|++++|+|
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D 105 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 105 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 45689999999999999999999998887667788887777888889999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 115 SADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+++++++..+..|+..+.......+.|+++|+||+|+.+..
T Consensus 106 ~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~ 146 (192)
T 2b6h_A 106 SNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM 146 (192)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred CCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC
Confidence 99999999999999888776545689999999999997754
No 9
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.95 E-value=1.5e-27 Score=165.82 Aligned_cols=124 Identities=37% Similarity=0.674 Sum_probs=106.6
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 32 RSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 32 ~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
.....+.++|+++|++|||||||++++.+.....+.++.+.....+..++..+.+||+||+.++...+..+++.+|++++
T Consensus 15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 94 (181)
T 2h17_A 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV 94 (181)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred cCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 34455689999999999999999999999887777788887777888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|+|++++.++..+..|+..+.......+.|+++|+||+|+.+..
T Consensus 95 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 138 (181)
T 2h17_A 95 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 138 (181)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC
Confidence 99999999999999999888775434689999999999998753
No 10
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=3.1e-27 Score=164.96 Aligned_cols=121 Identities=38% Similarity=0.700 Sum_probs=103.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEEC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
.+.++|+++|++|||||||++++.++....+.||.+.....+..++..+.+|||||++++...+..+++.+|++++|+|+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 93 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDS 93 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence 56899999999999999999999988766777888877777888899999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 116 ADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++++++..+..|+..+.......+.|+++|+||+|+.+...
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~ 134 (187)
T 1zj6_A 94 TDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT 134 (187)
T ss_dssp TCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCC
Confidence 99999999999998888764446899999999999987543
No 11
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.95 E-value=4.1e-27 Score=165.42 Aligned_cols=124 Identities=36% Similarity=0.681 Sum_probs=105.6
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCc--cCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASEDISH--ITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
.......+|+++|++|||||||+++|.+..... +.+|.+.....+......+.+|||||+..+...+..+++.+|+++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 455668999999999999999999999988544 488999888888889999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCCC-------CCCcEEEEEeCCCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEKL-------TGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~iivv~nK~Dl~~~~~ 156 (162)
+|||++++++|..+..|+..+...... .++|+++|+||+|+.+...
T Consensus 92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~ 144 (199)
T 4bas_A 92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT 144 (199)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC
T ss_pred EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC
Confidence 999999999999999998888765221 2789999999999987744
No 12
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.95 E-value=3.4e-27 Score=164.90 Aligned_cols=121 Identities=47% Similarity=0.843 Sum_probs=108.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEEC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
.+.++|+++|++|||||||++++.......+.||.+.....+..++..+.+|||||++++...+..+++.+|++++|+|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 99 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDS 99 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeC
Confidence 56899999999999999999999988876778888887888888899999999999999999888999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 116 ADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++++++.....|+..+.......+.|+++|+||+|+.+...
T Consensus 100 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 140 (189)
T 2x77_A 100 TDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS 140 (189)
T ss_dssp TCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC
T ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC
Confidence 99999999999998887765556899999999999987643
No 13
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=162.02 Aligned_cols=123 Identities=38% Similarity=0.675 Sum_probs=106.7
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCC--CCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASED--ISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
...+.++|+++|++|||||||++++.+.. ...+.++.+.....+..++..+.+|||||+..+...+..+++.+|++++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIF 96 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 34557999999999999999999999876 4557788888888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCC--CCCcEEEEEeCCCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKL--TGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~iivv~nK~Dl~~~~~ 156 (162)
|+|++++.++..+..|+..+...... .+.|+++|+||+|+.+...
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 143 (190)
T 2h57_A 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVT 143 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCC
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCC
Confidence 99999999999999999888876544 5899999999999987543
No 14
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.94 E-value=3.2e-26 Score=160.13 Aligned_cols=121 Identities=38% Similarity=0.771 Sum_probs=107.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
..+.++|+++|++|||||||++++.+... ..+.++.+.....+...+..+.+||+||+.++...+..+++.+|++++|+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 98 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV 98 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEE
Confidence 44579999999999999999999998774 35678888888888888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|+++++++..+..|+..+.......+.|+++|+||+|+.+..
T Consensus 99 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 140 (188)
T 1zd9_A 99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL 140 (188)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC
Confidence 999999999999999888775444689999999999998753
No 15
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=8.6e-27 Score=161.74 Aligned_cols=120 Identities=52% Similarity=0.887 Sum_probs=104.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEEC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
.+.++|+++|++|||||||++++.++....+.++.+.....+..++..+.+||+||+..+...+..+++.+|++++|+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDS 95 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 67899999999999999999999988777778888877778888889999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 116 ADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+++.++..+..|+..+.......+.|+++|+||+|+.+..
T Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 135 (183)
T 1moz_A 96 TDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL 135 (183)
T ss_dssp TCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC
T ss_pred CCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC
Confidence 9999999999999888876545689999999999998754
No 16
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.94 E-value=1.3e-25 Score=153.38 Aligned_cols=120 Identities=23% Similarity=0.273 Sum_probs=79.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEE-EEEe--CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIK-SVQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVID 114 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d 114 (162)
.+||+++|++|||||||++++.+.......++.+.+.. .+.. ....+.+||+||+..+...+..+++.+|++++|||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 57999999999999999999998776566666665443 2333 34688999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 115 SADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
+++++++..+..|+..+.......++|+++|+||+|+.+.+..
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 124 (166)
T 3q72_A 82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREV 124 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCS
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccccccc
Confidence 9999999999999999887765578999999999999876543
No 17
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.93 E-value=3.6e-25 Score=153.42 Aligned_cols=122 Identities=21% Similarity=0.316 Sum_probs=99.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEE-EEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK-SVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
.+.++|+++|++|||||||++++.++. ...+.++.+.... .+..++ ..+.+||+||++.+...+..+++.+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 457999999999999999999999666 4556677665543 344444 678999999999998888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
|||++++++++.+..|+..+.......++|+++|+||+|+.+.+..
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 129 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI 129 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCS
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhccee
Confidence 9999999999999999888877655568999999999999765543
No 18
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.93 E-value=4.5e-25 Score=153.16 Aligned_cols=126 Identities=20% Similarity=0.275 Sum_probs=101.1
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEE-EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCC
Q psy689 32 RSSPEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNI-KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTD 107 (162)
Q Consensus 32 ~~~~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d 107 (162)
.....+.+||+++|++|||||||++++.+.. ...+.++.+... ..+..++ ..+.+||+||++.+...+..+++.+|
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 91 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD 91 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 3455678999999999999999999999776 334555655443 3334444 56778999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 108 ILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 108 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
++++|||++++.++..+..|+..+.......++|+++|+||+|+.+.+..
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v 141 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKV 141 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCc
Confidence 99999999999999999999888776544468999999999999875443
No 19
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.93 E-value=9.3e-25 Score=150.20 Aligned_cols=121 Identities=21% Similarity=0.239 Sum_probs=89.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeE--EEEEEeCC--eEEEEEeCCCCCC--ChhhHHhhcccCCEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFN--IKSVQSEG--FKLNVWDIGGQRK--IRPYWRNYFDNTDIL 109 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~--~~~~~~~~--~~~~l~D~~G~~~--~~~~~~~~~~~~d~v 109 (162)
.+.+||+++|++|||||||++++.+.......++.+.+ ...+..++ ..+.+||+||+.. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 35789999999999999999999988755544555533 33445544 5789999999988 566677888999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++|||++++.++..+..|+..+.......++|+++|+||+|+.+.+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~ 128 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCRE 128 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccc
Confidence 99999999999999998888877654445899999999999987654
No 20
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.93 E-value=6.6e-25 Score=149.75 Aligned_cols=120 Identities=18% Similarity=0.280 Sum_probs=98.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEEE-EEe--CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIKS-VQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~-~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
+.+||+++|++|||||||++++.+... ..+.++.+..... +.. ....+.+||+||+..+...+..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 468999999999999999999998763 3455666654432 333 347899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|++++.++..+..|+..+.......+.|+++|+||+|+.+.+.
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 125 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV 125 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccccc
Confidence 99999999999888888877654345899999999999976543
No 21
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=4.3e-25 Score=155.85 Aligned_cols=122 Identities=18% Similarity=0.261 Sum_probs=97.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEEE---EEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIKS---VQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~---~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
.+.+||+++|++|||||||+++|.+... ..+.++.+..... +......+.+|||||++.+...+..+++.+|++++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVL 101 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEE
Confidence 4689999999999999999999998873 3445666644322 22355889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
|||+++++++..+..|+..+.......++|+++|+||+|+...+..
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v 147 (201)
T 3oes_A 102 VYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREV 147 (201)
T ss_dssp EEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCS
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcccccc
Confidence 9999999999999999998877655568999999999999765543
No 22
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.93 E-value=9.4e-25 Score=150.81 Aligned_cols=123 Identities=20% Similarity=0.345 Sum_probs=101.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEE-EEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK-SVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
...+.++|+++|++|||||||++++.+.. ...+.++.+.... .+..++ ..+.+||+||+.++...+..+++.+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 44568999999999999999999999876 3445566665433 344444 6889999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++|+|++++.++..+..|+..+.......+.|+++|+||+|+...+.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 131 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ 131 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccc
Confidence 99999999999999999988876554445789999999999976543
No 23
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.93 E-value=1.8e-24 Score=151.51 Aligned_cols=126 Identities=25% Similarity=0.430 Sum_probs=102.2
Q ss_pred hcCCCCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeE--EEEEEeCC--eEEEEEeCCCCCCChhhHHhhccc
Q psy689 31 LRSSPEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFN--IKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDN 105 (162)
Q Consensus 31 ~~~~~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ 105 (162)
........++|+++|++|||||||+++|.+... ..+.++.+.. ...+...+ ..+.+||+||+..+...+..+++.
T Consensus 9 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 88 (196)
T 3tkl_A 9 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 88 (196)
T ss_dssp --CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTT
T ss_pred cCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhh
Confidence 344556689999999999999999999998773 3445555543 34455555 689999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 106 TDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 106 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
+|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+..
T Consensus 89 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl~~~~~~ 139 (196)
T 3tkl_A 89 AHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVV 139 (196)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCCS
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECccccccccc
Confidence 9999999999999999999888877765533 47899999999999876544
No 24
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=1.1e-24 Score=148.93 Aligned_cols=118 Identities=24% Similarity=0.431 Sum_probs=98.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
+.++|+++|++|||||||++++.+... ..+.++.+... ..+... ...+.+||+||+..+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 368999999999999999999998773 34566666543 334443 3689999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|+|++++.++..+..|+..+..... .+.|+++|+||+|+....
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~ 124 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDXLQEG 124 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGSS
T ss_pred EEecCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCccccc
Confidence 9999999999999888888766542 578999999999998764
No 25
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.93 E-value=1.7e-24 Score=151.15 Aligned_cols=116 Identities=18% Similarity=0.298 Sum_probs=94.9
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
....+.+||+++|++|||||||++++.+..+ ..+.++.+.....+..++ ..+.+|||+|++.+. +++.+|++
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 3456689999999999999999999988773 335566554445566655 677889999998876 67889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133 (184)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99999999999999999998887765446799999999999953
No 26
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.93 E-value=5.2e-25 Score=150.16 Aligned_cols=120 Identities=19% Similarity=0.370 Sum_probs=96.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE-EEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK-SVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
+.++|+++|++|||||||++++.+... ..+.++.+.... .+...+ ..+.+||+||+.++...+..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 468999999999999999999998773 344555554433 344444 6899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|++++.++..+..|+..+.......+.|+++|+||+|+.+.+.
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 126 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 126 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCc
Confidence 99999999999989988887765545899999999999976543
No 27
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.92 E-value=1.6e-24 Score=151.22 Aligned_cols=121 Identities=20% Similarity=0.332 Sum_probs=100.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE---EEEeC-----------CeEEEEEeCCCCCCChhhH
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK---SVQSE-----------GFKLNVWDIGGQRKIRPYW 99 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~---~~~~~-----------~~~~~l~D~~G~~~~~~~~ 99 (162)
....++|+++|++|||||||++++.+... ..+.++.+.... .+... ...+.+||+||+..+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 45579999999999999999999998763 345666665543 33333 4689999999999999999
Q ss_pred HhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 100 RNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 100 ~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
..+++.+|++++|+|++++.++..+..|+..+.......++|+++|+||+|+.+.+
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 143 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQR 143 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGC
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 99999999999999999999999988888887766544689999999999997644
No 28
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.92 E-value=2.8e-24 Score=146.34 Aligned_cols=120 Identities=18% Similarity=0.314 Sum_probs=98.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeE-EEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFN-IKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~-~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
+.++|+++|++|||||||++++.++.. ..+.++.+.. ...+...+ ..+.+||+||+..+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 468999999999999999999997763 3444555433 33444444 5689999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|++++.++..+..|+..+.......+.|+++|+||+|+...+.
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 125 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESERE 125 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccccc
Confidence 99999999999999988887765556899999999999976543
No 29
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.92 E-value=1e-24 Score=149.14 Aligned_cols=120 Identities=20% Similarity=0.356 Sum_probs=98.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
.+.++|+++|++|||||||++++.+... ..+.++.+... ..+... ...+.+||+||+..+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 4579999999999999999999998763 33456666543 333333 478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|+|++++.++..+..|+..+..... +++|+++|+||+|+.+.+.
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~Dl~~~~~ 128 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRA 128 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCccccc
Confidence 99999999999999888888766533 5789999999999976543
No 30
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.92 E-value=2e-25 Score=169.04 Aligned_cols=120 Identities=51% Similarity=0.844 Sum_probs=103.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSA 116 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~ 116 (162)
+.+||+++|++|||||||++++.+..+....||.+.....+...+..+.+|||||++.+...+..+++.+|++++|||++
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~ 243 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 243 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETT
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC
Confidence 35799999999999999999999888666668888888888899999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 117 DVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++.+|..+..|+..++......++|++||+||+|+.+...
T Consensus 244 ~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~ 283 (329)
T 3o47_A 244 DRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 283 (329)
T ss_dssp CSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred chHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC
Confidence 9999999999998888766556899999999999987654
No 31
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.92 E-value=1.7e-24 Score=151.29 Aligned_cols=122 Identities=23% Similarity=0.443 Sum_probs=99.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCccee--EEEEEEeCC--eEEEEEeCCCCCCCh-hhHHhhcccCCE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGF--NIKSVQSEG--FKLNVWDIGGQRKIR-PYWRNYFDNTDI 108 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~--~~~~~~~~~--~~~~l~D~~G~~~~~-~~~~~~~~~~d~ 108 (162)
..+.+||+++|++|||||||++++.+... ..+.++.+. ....+..++ ..+.+||+||++++. ..+..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 34579999999999999999999997763 334555553 334455554 789999999999888 788889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 109 LIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.+.
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 144 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQ 144 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccce
Confidence 999999999999999999988887765456899999999999976543
No 32
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.92 E-value=1.2e-24 Score=153.79 Aligned_cols=122 Identities=21% Similarity=0.383 Sum_probs=95.8
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcce--eEEEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCC
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQG--FNIKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTD 107 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d 107 (162)
......+||+++|++|||||||++++.+..+ ..+.++.+ .....+..++ ..+.+||+||+.++...+..+++.+|
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN 103 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence 3445579999999999999999999998774 34456655 3344555555 68999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 108 ILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 108 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
++++|||++++.++..+..|+..+.... ..++|+++|+||+|+.+.+
T Consensus 104 ~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~ 150 (201)
T 2hup_A 104 GAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELR 150 (201)
T ss_dssp EEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCcccccc
Confidence 9999999999999999988888876643 2578999999999997644
No 33
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.92 E-value=2.2e-24 Score=149.88 Aligned_cols=122 Identities=20% Similarity=0.366 Sum_probs=99.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDI 108 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 108 (162)
...+.++|+++|++|||||||++++.+... ..+.++.+... ..+..++ ..+.+||+||+..+...+..+++.+|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 345679999999999999999999998774 34455655433 3445554 689999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 109 LIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+++|+|++++.++..+..|+..+..... .++|+++|+||+|+...+.
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~ 132 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADRE 132 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccc
Confidence 9999999999999999888877665432 5789999999999975443
No 34
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.92 E-value=2.1e-24 Score=149.01 Aligned_cols=121 Identities=26% Similarity=0.423 Sum_probs=99.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeE--EEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFN--IKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDI 108 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 108 (162)
...+.++|+++|++|||||||++++.+... ..+.++.+.. ...+...+ ..+.+||+||+..+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 345679999999999999999999998873 3445555533 34555555 789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 109 LIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+++|+|++++.++..+..|+..+.... ++.|+++|+||+|+.+.+.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 130 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKV 130 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcc
Confidence 999999999999999988888876643 4789999999999876554
No 35
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.92 E-value=6.9e-25 Score=152.21 Aligned_cols=120 Identities=23% Similarity=0.439 Sum_probs=76.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
...++|+++|++|||||||++++.+... ..+.++.+... ..+..++ ..+.+||+||+..+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 4579999999999999999999997763 34456666443 3455555 78999999999999988889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~ 130 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHAS-ADVEKMILGNKCDVNDKRQ 130 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEEC--CCSCCC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECccCCccCc
Confidence 99999999999999888887766432 4789999999999987544
No 36
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.92 E-value=4.6e-24 Score=150.50 Aligned_cols=122 Identities=20% Similarity=0.364 Sum_probs=101.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEE-EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNI-KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
..+.++|+++|++|||||||++++.+.. ...+.++.+... ..+..++ ..+.+||+||+..+...+..+++.+|+++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 4567999999999999999999999877 344556655443 3444444 58999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|||++++.++..+..|+..+.......++|+++|+||+|+.+.+.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 136 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 136 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccccc
Confidence 9999999999999999988887765556899999999999976543
No 37
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.92 E-value=3.6e-24 Score=148.91 Aligned_cols=119 Identities=22% Similarity=0.355 Sum_probs=95.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeE-EEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFN-IKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~-~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
++.++|+++|++|||||||+++|.+... ..+.++.+.. ...+..++ ..+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 4578999999999999999999998773 3344444433 23344444 568889999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
|||++++.++..+..|+..+.......+.|+++|+||+|+.+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 124 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSR 124 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSC
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCccc
Confidence 9999999999999999888877655568999999999999743
No 38
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.8e-24 Score=149.54 Aligned_cols=122 Identities=22% Similarity=0.412 Sum_probs=92.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCC--ccCCcceeEEE--EEEeCC--eEEEEEeCCCCCCChhhHHhhcccCC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDIS--HITPTQGFNIK--SVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTD 107 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~~--~~~~~~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d 107 (162)
...+.++|+++|++|||||||++++.+.... .+.++.+.... .+..++ ..+.+||+||+..+...+..+++.+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 3456899999999999999999999988753 45566665543 334444 58999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 108 ILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 108 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~ 133 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERV 133 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccc
Confidence 99999999999999998888877766433 5789999999999987543
No 39
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.92 E-value=1.8e-24 Score=148.12 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=87.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCC---ccCCcceeEEEEEEeCC--eEEEEEeCCCCCCChh-hHHhhcccCCEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDIS---HITPTQGFNIKSVQSEG--FKLNVWDIGGQRKIRP-YWRNYFDNTDILIY 111 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~--~~~~l~D~~G~~~~~~-~~~~~~~~~d~vl~ 111 (162)
.+||+++|++|||||||++++.+.... ...++.......+..++ ..+.+||+||+..+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 479999999999999999999866522 12223334444455544 6788999999998876 66777899999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
|||+++++++..+..|+..+.......++|+++|+||+|+.+.+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 126 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSRE 126 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhccc
Confidence 999999999999999999988766556899999999999975543
No 40
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.92 E-value=9.2e-25 Score=155.89 Aligned_cols=120 Identities=19% Similarity=0.259 Sum_probs=96.2
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEEE-EE--eCCeEEEEEeCCCCCCChhhHHhhcccCCE
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIKS-VQ--SEGFKLNVWDIGGQRKIRPYWRNYFDNTDI 108 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~~-~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 108 (162)
......+||+++|++|||||||++++.+.. ...+.++.+..+.. +. .....+.+|||+|++.+...+..+++.+|+
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 344568999999999999999999999877 34456777765442 22 344789999999999999999999999999
Q ss_pred EEEEEECCChhhHHH-HHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 109 LIYVIDSADVKRFEE-SGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 109 vl~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+++|||++++.++.. ...|+..+.... +++|+++|+||+|+.++
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTD 146 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccc
Confidence 999999999999998 567777766553 48899999999999763
No 41
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.92 E-value=2.8e-24 Score=151.35 Aligned_cols=122 Identities=19% Similarity=0.281 Sum_probs=94.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCcc--eeEEEEEEeCC--eEEEEEeCCCCCCChh-hHHhhcccCCE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDIS-HITPTQ--GFNIKSVQSEG--FKLNVWDIGGQRKIRP-YWRNYFDNTDI 108 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~-~~~~~~--~~~~~~~~~~~--~~~~l~D~~G~~~~~~-~~~~~~~~~d~ 108 (162)
....+||+++|++|||||||+++|.+.... ...++. ......+..++ ..+.+||++|+..+.. ++..+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 455799999999999999999999754311 122222 23334444544 6789999999988765 67788999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 109 LIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+++|||++++.+|..+..|+..+.......++|+++|+||+|+.+.+.
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 147 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSRE 147 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCC
Confidence 999999999999999999998877654445799999999999986544
No 42
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.92 E-value=3e-24 Score=150.36 Aligned_cols=123 Identities=21% Similarity=0.342 Sum_probs=100.2
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCcceeEEE--EEEe--CCeEEEEEeCCCCCCChhhHHhhcccCC
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASEDIS-HITPTQGFNIK--SVQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTD 107 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d 107 (162)
....+.+||+++|++|||||||+++|.+.... .+.++.+.... .+.. ....+.+||+||+.++...+..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 34556799999999999999999999988743 44566564433 3333 3478999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 108 ILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 108 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.
T Consensus 100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~ 147 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQARE 147 (193)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccc
Confidence 9999999999999998888888876543 35789999999999976543
No 43
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=2.3e-24 Score=151.07 Aligned_cols=120 Identities=24% Similarity=0.373 Sum_probs=99.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEEE--EEe--CCeEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIKS--VQS--EGFKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
..+.+||+++|++|||||||++++.+... ..+.++.+.+... +.. ....+.+||+||+.++...+..+++.+|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 35579999999999999999999998874 4567777765443 333 347899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
++|+|++++.++..+..|+..+.... ..++|+++|+||+|+.+.+
T Consensus 100 ilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~ 144 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIR 144 (192)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECccccccc
Confidence 99999999999999988888776543 2578999999999997543
No 44
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.92 E-value=2.4e-24 Score=147.35 Aligned_cols=120 Identities=25% Similarity=0.368 Sum_probs=99.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEE--EEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK--SVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
.+.++|+++|++|||||||++++.+.. ...+.++.+.... .+... ...+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 457999999999999999999999887 4455677765543 33443 378999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|+|++++.++..+..|+..+.... .+..|+++|+||+|+.+.+.
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~ 128 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHG-PPSIVVAIAGNKCDLTDVRE 128 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTSEEEEEEECTTCGGGCC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECCccccccc
Confidence 9999999999999888887776542 25789999999999976543
No 45
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.92 E-value=9.9e-25 Score=150.55 Aligned_cols=121 Identities=25% Similarity=0.350 Sum_probs=97.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCcce--eEEEEEEeCC---eEEEEEeCCCCCCChhhHHhhcccCCE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDIS-HITPTQG--FNIKSVQSEG---FKLNVWDIGGQRKIRPYWRNYFDNTDI 108 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~-~~~~~~~--~~~~~~~~~~---~~~~l~D~~G~~~~~~~~~~~~~~~d~ 108 (162)
..+.++|+++|++|||||||++++.+.... .+.++.+ .....+...+ ..+.+||+||+..+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 456899999999999999999999987643 3445555 4455666654 899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhCCC--CCCCcEEEEEeCCCCCCCC
Q psy689 109 LIYVIDSADVKRFEESGFELHELLSDEK--LTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~ 155 (162)
+++|+|++++.++..+..|+..+..... ....|+++|+||+|+.+.+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~ 131 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMR 131 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccccc
Confidence 9999999999999988888777655311 1233489999999997644
No 46
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.92 E-value=7.5e-24 Score=149.40 Aligned_cols=120 Identities=21% Similarity=0.359 Sum_probs=99.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE--EEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK--SVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
...+||+++|++|||||||+++|.+... ..+.++.+.... .+... ...+.+||+||+..+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 4579999999999999999999998874 345566665443 34433 478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~ 130 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERV 130 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccc
Confidence 9999999999999888888776543 24789999999999977543
No 47
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=2.9e-24 Score=150.25 Aligned_cols=119 Identities=24% Similarity=0.390 Sum_probs=99.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
..+.++|+++|++|||||||+++|.+... ..+.++.+... ..+..+ ...+.+|||||+..+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 34579999999999999999999998873 34566666443 334443 47899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
++|+|++++.++..+..|+..+.......++|+++|+||+|+.+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 99999999999999998988887765456899999999999954
No 48
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.92 E-value=4.1e-24 Score=147.80 Aligned_cols=121 Identities=22% Similarity=0.375 Sum_probs=98.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCcceeE--EEEEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDIS-HITPTQGFN--IKSVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
..+.+||+++|++|||||||++++.+.... ...++.+.. ...+... ...+.+||+||+..+...+..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 455799999999999999999999988743 334555532 3344444 46899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++|+|++++.++..+..|+..+..... ++.|+++|+||+|+.+.+.
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~~~~~ 134 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQGN-PNMVMALAGNKSDLLDARK 134 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCccccccc
Confidence 999999999999999888888776532 5789999999999976554
No 49
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.92 E-value=1.4e-24 Score=172.28 Aligned_cols=120 Identities=49% Similarity=0.844 Sum_probs=110.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEEC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDS 115 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~ 115 (162)
.+.+||+++|.+|||||||+++|.+.....+.||.+.....+...+..+.+|||||++.+...+..+++.+|++|+|||+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~ 399 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDC 399 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEET
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEEC
Confidence 35699999999999999999999998877788899999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 116 ADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+++++|..+..|+..++......++|++||+||+|+.+..
T Consensus 400 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 439 (497)
T 3lvq_E 400 ADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 439 (497)
T ss_dssp TCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC
T ss_pred cchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC
Confidence 9999999999999998876555689999999999997654
No 50
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.92 E-value=4.1e-24 Score=148.29 Aligned_cols=122 Identities=20% Similarity=0.359 Sum_probs=99.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE-EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI-KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
..+.+||+++|++|||||||++++.+... ..+.++.+... ..+...+ ..+.+||+||+..+...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 34579999999999999999999998773 34455555443 3344444 68999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|||++++.++..+..|+..+.......++|+++|+||+|+.+.+.
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 140 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 140 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc
Confidence 9999999999999999988887765445899999999999976543
No 51
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.92 E-value=4.1e-24 Score=149.88 Aligned_cols=119 Identities=20% Similarity=0.301 Sum_probs=95.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEEE-EEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIKS-VQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~-~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
...+.+||+++|++|||||||++++.+... ..+.++.+..... +..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 345679999999999999999999998873 4456676655443 33333 6679999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 110 IYVIDSADVKRFEES-GFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 110 l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++|||++++.++..+ ..|+..+.... .++|+++|+||+|+.+.
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYI--DTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--TTSEEEEEEECGGGCCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccC
Confidence 999999999999997 44655554432 47899999999999864
No 52
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.92 E-value=4.7e-24 Score=149.00 Aligned_cols=122 Identities=22% Similarity=0.369 Sum_probs=99.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE--EEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK--SVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDI 108 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 108 (162)
.....+||+++|++|||||||++++.+... ..+.++.+.... .+... ...+.+||+||+..+...+..+++.+|+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 344579999999999999999999998874 345566664443 33333 4789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 109 LIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~ 144 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERV 144 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccC
Confidence 999999999999999888887776543 24789999999999976543
No 53
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=4.8e-24 Score=150.97 Aligned_cols=122 Identities=25% Similarity=0.368 Sum_probs=99.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDI 108 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 108 (162)
...+.+||+++|++|||||||++++.+..+ ..+.++.+... ..+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 345579999999999999999999988764 34456665443 3455554 689999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 109 LIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~NK~Dl~~~~~ 148 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQYAS-NKVITVLVGNKIDLAERRE 148 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCccccc
Confidence 9999999999999998888887765432 4789999999999975443
No 54
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.92 E-value=8.5e-25 Score=153.04 Aligned_cols=121 Identities=25% Similarity=0.302 Sum_probs=93.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCcc-----------CCcceeEEEEEE-----eCCeEEEEEeCCCCCCChh
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDISHI-----------TPTQGFNIKSVQ-----SEGFKLNVWDIGGQRKIRP 97 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~-----------~~~~~~~~~~~~-----~~~~~~~l~D~~G~~~~~~ 97 (162)
.....+||+++|++|||||||++.+.+.....+ .++.+..+.... .....+.+|||||+..+..
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 345679999999999999999987776654332 334444433221 2347899999999999999
Q ss_pred hHHhhcccCCEEEEEEECC------ChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 98 YWRNYFDNTDILIYVIDSA------DVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 98 ~~~~~~~~~d~vl~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
.+..+++.+|++++|||++ +.+++..+..|+..+.. ...++|+++|+||+|+.+...
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~Dl~~~~~ 152 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIVIQVNKRDLPDALP 152 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECTTSTTCCC
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEchhcccccC
Confidence 9999999999999999999 56777777778777632 236899999999999987533
No 55
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.92 E-value=1.3e-24 Score=148.48 Aligned_cols=119 Identities=19% Similarity=0.383 Sum_probs=97.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCccee--EEEEEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGF--NIKSVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~--~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
+..+||+++|++|||||||++++.+... ..+.++.+. ....+... ...+.+||+||+..+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 4679999999999999999999998763 344555553 33444444 368999999999999888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~ 126 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSC 126 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccc
Confidence 9999999999999888887776543 4789999999999976543
No 56
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.92 E-value=3.4e-24 Score=147.71 Aligned_cols=121 Identities=18% Similarity=0.330 Sum_probs=98.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeE--EEEEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFN--IKSVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~--~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
..+.++|+++|++|||||||++++.+... ..+.++.+.. ...+... ...+.+||+||+..+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 45679999999999999999999998773 3445555533 3334443 36899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~ 137 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADLEAQRD 137 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCC
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccc
Confidence 999999999999998888877765432 4789999999999976543
No 57
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.92 E-value=8.7e-24 Score=145.67 Aligned_cols=118 Identities=19% Similarity=0.449 Sum_probs=95.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
..+.++|+++|++|||||||++++.+... ..+.++.+... ..+..++ ..+.+||+||+..+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 45579999999999999999999998773 34556666543 3444554 6899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCC---CCCCcEEEEEeCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEK---LTGVPLLVYANKQDLL 152 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~ 152 (162)
++|+|++++.++..+..|+..+..... ..++|+++|+||+|+.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 999999999999998888877655321 2578999999999997
No 58
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.92 E-value=2.4e-24 Score=147.46 Aligned_cols=120 Identities=22% Similarity=0.315 Sum_probs=90.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE--EEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK--SVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
.+.+||+++|++|||||||++++.+... ....++.+.... .+..+ ...+.+||+||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 4579999999999999999999998764 345566664433 34443 368999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|+|++++.++..+..|+..+..... .++|+++|+||+|+.+.+.
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~ 128 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLG-NEICLCIVGNKIDLEKERH 128 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHG-GGSEEEEEEECGGGGGGCC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEECcccccccc
Confidence 99999999999999888877654322 4789999999999976543
No 59
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=6.1e-24 Score=145.47 Aligned_cols=120 Identities=15% Similarity=0.244 Sum_probs=95.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE-EEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK-SVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
+.++|+++|++|||||||++++.+... ..+.++.+.... .+... ...+.+||+||+.++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 468999999999999999999998763 344555554433 23333 36789999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCC-CCCCCcEEEEEeCCCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDE-KLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|++++.++..+..|+..+.... ..++.|+++|+||+|+...+.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~ 126 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE 126 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCC
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccc
Confidence 99999999988888877665532 224789999999999976544
No 60
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.92 E-value=3.9e-24 Score=149.50 Aligned_cols=121 Identities=21% Similarity=0.271 Sum_probs=93.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEE-EEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK-SVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
..+.+||+++|++|||||||++++.+.. ...+.++.+..+. .+..+ ...+.+|||||++.+... ..+++.+|+++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 4567999999999999999999999877 4456677765432 33333 378899999999988775 56889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCC--CCCCcEEEEEeCCCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEK--LTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|||+++++++..+..|+..+..... ..+.|+++|+||+|+.+.+.
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~ 144 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ 144 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc
Confidence 99999999999999989888765421 14789999999999976543
No 61
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.91 E-value=1.5e-23 Score=148.21 Aligned_cols=121 Identities=27% Similarity=0.447 Sum_probs=99.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeE--EEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFN--IKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
....++|+++|++|||||||+++|.+... ..+.++.+.. ...+..++ ..+.+||+||+.++...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 35679999999999999999999998774 3345555533 33455544 6899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~ 130 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRYAT-STVLKLLVGNKCDLKDKRV 130 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCccccc
Confidence 999999999999999888887765432 4789999999999987543
No 62
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.91 E-value=5.1e-24 Score=149.11 Aligned_cols=123 Identities=21% Similarity=0.372 Sum_probs=97.2
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCcce--eEEEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCC
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASEDIS-HITPTQG--FNIKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTD 107 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~~~-~~~~~~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d 107 (162)
....+.+||+++|++|||||||++++.+.... .+.++.+ .....+..++ ..+.+||+||+..+...+..+++.+|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 34555799999999999999999999987743 3344444 3334455544 68999999999999998899999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 108 ILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 108 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~-~~~piilv~nK~Dl~~~~~ 143 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLESRRD 143 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccCCccc
Confidence 99999999999999999888888765432 5789999999999976443
No 63
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=7.6e-24 Score=148.81 Aligned_cols=120 Identities=19% Similarity=0.224 Sum_probs=97.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE-EEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK-SVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
.+.+||+++|++|||||||++++.+... ..+.++.+.... .+..+ ...+.+||+||+.. ...+..+++.+|++++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iil 104 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVL 104 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEE
Confidence 4679999999999999999999998773 345566665443 24444 37799999999988 7778889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
|||+++++++..+..|+..+.......++|+++|+||+|+.+.+.
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~ 149 (196)
T 2atv_A 105 VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQ 149 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC
T ss_pred EEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccc
Confidence 999999999999988888776654445899999999999977543
No 64
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.91 E-value=3.2e-24 Score=149.32 Aligned_cols=117 Identities=19% Similarity=0.265 Sum_probs=94.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE-EEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK-SVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
....+||+++|++|||||||++++.+..+ ..+.|+.+.... .+..+ ...+.+||+||+..+...+..+++.+|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 45689999999999999999999998774 345666664442 33333 478999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 111 YVIDSADVKRFEES-GFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 111 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRT 125 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhc
Confidence 99999999999998 56766665443 4789999999999975
No 65
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.91 E-value=1.9e-24 Score=154.00 Aligned_cols=122 Identities=20% Similarity=0.347 Sum_probs=98.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE--EEEeC------------CeEEEEEeCCCCCCChhhH
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK--SVQSE------------GFKLNVWDIGGQRKIRPYW 99 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~--~~~~~------------~~~~~l~D~~G~~~~~~~~ 99 (162)
..+.+||+++|++|||||||+++|.+... ..+.++.+..+. .+... ...+.+|||||+..+...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 45579999999999999999999998764 334455554332 23332 5789999999999999999
Q ss_pred HhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 100 RNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 100 ~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
..+++.+|++++|||++++.++..+..|+..+.......++|+++|+||+|+.+.+.
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~ 158 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQRE 158 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccc
Confidence 999999999999999999999999888887776554446899999999999976543
No 66
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.91 E-value=1.8e-23 Score=144.42 Aligned_cols=112 Identities=19% Similarity=0.284 Sum_probs=89.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEE-EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNI-KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
.+.+||+++|++|||||||++++.+..+..+.|+.+..+ ..+..++ ..+.+|||||+++ ..+++.+|++++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 467999999999999999999999988666777777543 3344444 6789999999886 3577889999999
Q ss_pred EECCChhhHHHHHHHHHHHhh--CCCCCCCcEEEEEeCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLS--DEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~iivv~nK~Dl~ 152 (162)
||+++++++..+..|+..+.. ....+++|+++|+||+|+.
T Consensus 80 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 80 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred EECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 999999999999887544332 2223578999999999995
No 67
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.91 E-value=7.4e-24 Score=148.56 Aligned_cols=123 Identities=21% Similarity=0.404 Sum_probs=95.3
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeE--EEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCC
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFN--IKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTD 107 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d 107 (162)
......++|+++|++|||||||+++|.+... ..+.++.+.. ...+..++ ..+.+||+||+..+...+..+++.+|
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 3455679999999999999999999998773 3345555543 34455544 68999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 108 ILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 108 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilV~NK~Dl~~~~~ 148 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCETDRE 148 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccc
Confidence 9999999999999999888876665443 24789999999999976543
No 68
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.91 E-value=6e-24 Score=146.51 Aligned_cols=120 Identities=20% Similarity=0.457 Sum_probs=97.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeE--EEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFN--IKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
.+.++|+++|++|||||||++++.+... ..+.++.+.. ...+..++ ..+.+||+||+..+...+..+++.+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 3569999999999999999999997763 3345555533 33444544 68999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~ 136 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQ 136 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECGGGGGGCC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCcccccCc
Confidence 99999999999999888887765432 4789999999999976544
No 69
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.91 E-value=4.9e-24 Score=147.29 Aligned_cols=120 Identities=23% Similarity=0.407 Sum_probs=85.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcce--eEEEEEEeC---CeEEEEEeCCCCCCChhhHHhhcccCCE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQG--FNIKSVQSE---GFKLNVWDIGGQRKIRPYWRNYFDNTDI 108 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~--~~~~~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 108 (162)
..+.++|+++|++|||||||++++.+... ..+.++.+ .....+... ...+.+||+||+..+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 45689999999999999999999998773 34455554 333444443 4789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhCC---CCCCCcEEEEEeCCCCCCC
Q psy689 109 LIYVIDSADVKRFEESGFELHELLSDE---KLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iivv~nK~Dl~~~ 154 (162)
+++|+|++++.++..+..|+..+.... ...++|+++|+||+|+...
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 133 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES 133 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc
Confidence 999999999999999988887766542 1257899999999999643
No 70
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.91 E-value=9.9e-24 Score=150.02 Aligned_cols=122 Identities=21% Similarity=0.307 Sum_probs=93.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeC---CeEEEEEeCCCCCCChh-hHHhhcccCCEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSE---GFKLNVWDIGGQRKIRP-YWRNYFDNTDILI 110 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~D~~G~~~~~~-~~~~~~~~~d~vl 110 (162)
..+.+||+++|++|||||||++++.+..+....++.......+..+ ...+.+|||||+.++.. .+..+++.+|+++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 3457899999999999999999999887544444444455556665 68899999999999987 7888899999999
Q ss_pred EEEECCChh-hHHHHHHHHHHHhhC--CCCCCCcEEEEEeCCCCCCCCC
Q psy689 111 YVIDSADVK-RFEESGFELHELLSD--EKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 111 ~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|||+++.. ++.....++..++.. ....++|+++|+||+|+.+...
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 132 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS 132 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc
Confidence 999999854 466666666655433 1224789999999999987653
No 71
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.91 E-value=2.4e-23 Score=141.44 Aligned_cols=116 Identities=22% Similarity=0.359 Sum_probs=95.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE-EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEEE
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI-KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~ 113 (162)
.++|+++|++|||||||++++.+... ..+.++.+... ..+...+ ..+.+||+||+.++...+..+++.+|++++|+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 82 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence 57999999999999999999987763 33445554432 3344433 67899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 114 DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 114 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
|++++.++..+..|+..+.......+.|+++|+||+|+..
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 83 AINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 9999999999988888776654445799999999999976
No 72
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.91 E-value=2.8e-23 Score=145.79 Aligned_cols=112 Identities=21% Similarity=0.388 Sum_probs=93.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE--EEEEeCC-------------------------------
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI--KSVQSEG------------------------------- 81 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~--~~~~~~~------------------------------- 81 (162)
.+.++|+++|++|||||||+++|.+... ..+.++.+... ..+...+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 4679999999999999999999998873 34556655333 3333333
Q ss_pred --------eEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCC
Q psy689 82 --------FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQD 150 (162)
Q Consensus 82 --------~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 150 (162)
..+.+||+||+..+...+..+++.+|++++|+|++++.++..+..|+..+.... +.|+++|+||+|
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D 158 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKID 158 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTT
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCC
Confidence 789999999999999999999999999999999999999999888888877653 489999999999
No 73
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1e-23 Score=147.70 Aligned_cols=117 Identities=22% Similarity=0.306 Sum_probs=96.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE-EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI-KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
.+.++|+++|++|||||||++++.+..+ ..+.++.+... ..+..++ ..+.+||+||+.++...+..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 3579999999999999999999998763 34456655433 3444444 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 112 VIDSADVKRFEESG-FELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 112 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
|||++++.++..+. .|+..+.... +++|+++|+||+|+.+.
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccc
Confidence 99999999999987 5766665543 47899999999999864
No 74
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.91 E-value=2.5e-24 Score=153.97 Aligned_cols=122 Identities=21% Similarity=0.386 Sum_probs=100.9
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEEEEE--e--CCeEEEEEeCCCCCCChhhHHhhcccCC
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIKSVQ--S--EGFKLNVWDIGGQRKIRPYWRNYFDNTD 107 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~~~~--~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d 107 (162)
......+||+++|++|||||||+++++.+. ...+.++.+.+..... . ....+.+|||||+..+...+..+++.+|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 345668999999999999999999966554 4556677776554333 2 3478999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 108 ILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 108 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++++|||++++.++..+..|+..+.... .++|+++|+||+|+.+...
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~ 136 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV 136 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccc
Confidence 9999999999999999989988887654 4789999999999976544
No 75
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8.5e-24 Score=151.57 Aligned_cols=121 Identities=23% Similarity=0.395 Sum_probs=94.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCccee--EEEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDIS-HITPTQGF--NIKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~-~~~~~~~~--~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
....++|+++|++|||||||+++|.+..+. .+.++.+. ....+...+ ..+.+|||||+..+...+..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 356799999999999999999999988743 34455553 334455555 7899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++|||++++.++..+..|+..+.... ..++|++||+||+|+.+.+.
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~ 135 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRA 135 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccc
Confidence 99999999999999988888876543 24789999999999976443
No 76
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.91 E-value=8e-24 Score=144.73 Aligned_cols=115 Identities=27% Similarity=0.471 Sum_probs=91.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeE--EEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFN--IKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
..++|+++|++|||||||++++.+... ..+.++.+.. ...+...+ ..+.+||+||+..+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999998774 3344555533 33444443 689999999999999888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
|+|++++.++..+..|+..+..... .+.|+++|+||+|+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDME 121 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCC
Confidence 9999999999988888877766432 478999999999994
No 77
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.91 E-value=1.2e-23 Score=148.10 Aligned_cols=120 Identities=19% Similarity=0.327 Sum_probs=91.2
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEE-EEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCE
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK-SVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDI 108 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 108 (162)
....+.++|+++|++|||||||++++.+.. ...+.++.+..+. .+..++ ..+.+||+||+.++...+..+++.+|+
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 345668999999999999999999999876 3345566654433 344444 578899999999999999999999999
Q ss_pred EEEEEECCChhhHHHHH-HHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 109 LIYVIDSADVKRFEESG-FELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+++|||++++.++..+. .|+..+.... +++|+++|+||+|+...
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLRED 139 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhc
Confidence 99999999999999987 5776665543 37899999999999763
No 78
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.91 E-value=5.9e-24 Score=149.79 Aligned_cols=118 Identities=26% Similarity=0.469 Sum_probs=88.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeE--EEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFN--IKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDI 108 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 108 (162)
...+.+||+++|++|||||||++++.+..+ ..+.++.+.. ...+..++ ..+.+||+||++.+...+..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 445679999999999999999999998873 4455666643 23444444 679999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 109 LIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
+++|||++++.++..+..|+..+..... .+.|+++|+||+|+.
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAH-ETVPIMLVGNKADIR 146 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC----CCEEEEEECGGGH
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccc
Confidence 9999999999999998888776654332 478999999999996
No 79
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.91 E-value=4e-24 Score=150.94 Aligned_cols=122 Identities=20% Similarity=0.364 Sum_probs=92.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCccee--EEEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGF--NIKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDI 108 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~--~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 108 (162)
...+.+||+++|++|||||||++++.+... ..+.++.+. ....+..++ ..+.+||+||+..+...+..+++.+|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 100 (200)
T 2o52_A 21 WSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 100 (200)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCE
Confidence 345679999999999999999999998773 334455443 334445554 789999999998888888889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 109 LIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+++|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.
T Consensus 101 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~ 147 (200)
T 2o52_A 101 ALLVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPERE 147 (200)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccc
Confidence 9999999999999999888887765433 5789999999999975443
No 80
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.91 E-value=2.3e-24 Score=152.16 Aligned_cols=118 Identities=19% Similarity=0.283 Sum_probs=72.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcC--C-CCccCCcce--eEEEEEEeC----CeEEEEEeCCCCCCChhhHHhhcccC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASE--D-ISHITPTQG--FNIKSVQSE----GFKLNVWDIGGQRKIRPYWRNYFDNT 106 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~--~-~~~~~~~~~--~~~~~~~~~----~~~~~l~D~~G~~~~~~~~~~~~~~~ 106 (162)
...++|+++|++|||||||++++.+. . ...+.++.+ .....+... ...+.+||+||+..+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45689999999999999999999988 4 335556665 333445555 56899999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhCCC--CCCCcEEEEEeCCCCCC
Q psy689 107 DILIYVIDSADVKRFEESGFELHELLSDEK--LTGVPLLVYANKQDLLG 153 (162)
Q Consensus 107 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iivv~nK~Dl~~ 153 (162)
|++++|||++++.++..+..|+..+..... ..++|+++|+||+|+.+
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 999999999999999999999888776543 25789999999999987
No 81
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.5e-24 Score=151.78 Aligned_cols=120 Identities=21% Similarity=0.365 Sum_probs=97.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCccee--EEEEEE--eCCeEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGF--NIKSVQ--SEGFKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
...+||+++|++|||||||++++.+... ..+.++.+. ....+. .....+.+||+||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 4469999999999999999999998763 334444442 223333 35689999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~ 145 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYS-WDNAQVILVGNKCDMEEERV 145 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccc
Confidence 9999999999999988888776643 35789999999999976543
No 82
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.91 E-value=2.5e-23 Score=147.66 Aligned_cols=118 Identities=19% Similarity=0.266 Sum_probs=95.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE-EEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK-SVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
.....+||+++|++|||||||++++.+..+ ..+.++.+.... .+..+ ...+.+|||||+..+...+..+++.+|++
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 345679999999999999999999998874 334566665442 33333 47899999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 110 IYVIDSADVKRFEES-GFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 110 l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRT 146 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGG
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhcc
Confidence 999999999999998 56776665543 4789999999999975
No 83
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.91 E-value=1.4e-24 Score=153.00 Aligned_cols=126 Identities=26% Similarity=0.448 Sum_probs=95.7
Q ss_pred hcCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCcce--eEEEEEEeCC--eEEEEEeCCCCCCChhhHHhhccc
Q psy689 31 LRSSPEKELRILLLGLDNAGKTTILKTLASEDIS-HITPTQG--FNIKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDN 105 (162)
Q Consensus 31 ~~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~-~~~~~~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ 105 (162)
......+.+||+++|++|||||||+++|.+.... .+.++.+ .....+..++ ..+.+|||||+..+...+..+++.
T Consensus 26 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 105 (199)
T 3l0i_B 26 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 105 (199)
T ss_dssp C-CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CC
T ss_pred cCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhc
Confidence 3344566799999999999999999999987633 3334444 3444555555 689999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 106 TDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 106 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
+|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+..
T Consensus 106 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl~~~~~v 156 (199)
T 3l0i_B 106 AHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVV 156 (199)
T ss_dssp CSEEEECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcc-CCCCEEEEEECccCCccccC
Confidence 9999999999999999999888887765433 57899999999999876543
No 84
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.91 E-value=5e-24 Score=151.36 Aligned_cols=117 Identities=22% Similarity=0.296 Sum_probs=94.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE-EEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK-SVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
.+.+||+++|++|||||||++++.+..+ ..+.++.+.... .+..+ ...+.+||+||++.+...+..+++.+|++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 4679999999999999999999998763 345566664432 33343 3789999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 112 VIDSADVKRFEESG-FELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 112 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
|||++++.++..+. .|+..+.... ++.|+++|+||+|+.+.
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDD 128 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhC
Confidence 99999999999987 5776665543 37899999999999765
No 85
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.91 E-value=1.7e-23 Score=147.85 Aligned_cols=119 Identities=21% Similarity=0.396 Sum_probs=95.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEE--EEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK--SVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
..+.++|+++|++|||||||++++.+.. ...+.++.+.... .+...+ ..+.+||+||+..+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 4567999999999999999999999877 3345566654433 333333 7899999999999988888999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCC---CCCCcEEEEEeCCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEK---LTGVPLLVYANKQDLLG 153 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iivv~nK~Dl~~ 153 (162)
++|+|++++.++..+..|+..+..... ..+.|+++|+||+|+.+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence 999999999999998888877665421 24789999999999973
No 86
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=2.1e-23 Score=146.42 Aligned_cols=119 Identities=16% Similarity=0.283 Sum_probs=95.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEEE-EEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIKS-VQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~-~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
....++|+++|++|||||||+++|.+... ..+.++.+..... +..+ ...+.+|||||+..+...+..+++.+|+++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 35679999999999999999999998763 3445565544432 3333 368999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCC-CCCCcEEEEEeCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEK-LTGVPLLVYANKQDLLG 153 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~ 153 (162)
+|||++++.++..+..|+..+..... ..+.|+++|+||+|+..
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 99999999999888887766544321 24789999999999975
No 87
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.90 E-value=1.3e-23 Score=149.88 Aligned_cols=119 Identities=23% Similarity=0.354 Sum_probs=78.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE-EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI-KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
...+.+||+++|++|||||||++++.+... ..+.++.+... ..+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 30 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 30 PGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp --CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 345689999999999999999999998763 33445555433 2344443 5899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 110 IYVIDSADVKRFEESG-FELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++|||++++.++..+. .|+..+.... +++|+++|+||+|+...
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhcc
Confidence 9999999999999986 5766665443 47899999999999865
No 88
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.90 E-value=5.3e-24 Score=151.82 Aligned_cols=120 Identities=25% Similarity=0.307 Sum_probs=95.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEEEEEe--C-C--eEEEEEeCCCCCCChhhHHhhcccCCE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIKSVQS--E-G--FKLNVWDIGGQRKIRPYWRNYFDNTDI 108 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~~~~~--~-~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 108 (162)
....+||+++|++|||||||+++|.+.. ...+.++.+........ . + ..+.+|||||+..+...+..+++.+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 4568999999999999999999999776 33445666655444333 1 1 789999999999999888999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 109 LIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~ 133 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKIDIKNRQ 133 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHC-SSSCEEEEEECTTCC---
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCcccc
Confidence 9999999999999998888877765432 368999999999997654
No 89
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.90 E-value=1.7e-23 Score=145.13 Aligned_cols=117 Identities=21% Similarity=0.310 Sum_probs=94.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEE-EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNI-KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
.+.++|+++|++|||||||++++.+.. ...+.++.+... ..+..++ ..+.+||+||+..+...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 457899999999999999999999776 334455555433 2334443 677899999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 112 VIDSADVKRFEESG-FELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 112 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
|||++++.++..+. .|+..+.... ++.|+++|+||+|+.+.
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDD 124 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEccccccc
Confidence 99999999999987 5666665443 37899999999999764
No 90
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.90 E-value=4.5e-23 Score=143.92 Aligned_cols=117 Identities=21% Similarity=0.348 Sum_probs=85.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE-EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI-KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
+.++|+++|++|||||||+++|.+... ..+.++.+... ..+...+ ..+.+||+||+..+...+..+++.+|++++|
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 99 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEE
Confidence 469999999999999999999997763 33444544333 3444444 6699999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
+|++++.++..+..|+..+.......+.|+++|+||+|+..
T Consensus 100 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 100 FAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 99999999999888887776654445789999999999976
No 91
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=3e-23 Score=147.14 Aligned_cols=117 Identities=27% Similarity=0.473 Sum_probs=95.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcce--eEEEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQG--FNIKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
....++|+++|++|||||||++++.+... ..+.++.+ .....+..++ ..+.+|||||+..+...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34579999999999999999999998773 34455555 3344555555 7899999999999998889999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 110 IYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
++|||++++.++..+..|+..+..... .+.|+++|+||+|+.
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDME 138 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTT-TCSEEEEEEECTTCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCc
Confidence 999999999999988888877766432 478999999999994
No 92
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.90 E-value=2.5e-23 Score=147.35 Aligned_cols=119 Identities=18% Similarity=0.281 Sum_probs=93.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEE-EEEeC--CeEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK-SVQSE--GFKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
..+.+||+++|++|||||||++++.... ...+.++.+.... .+..+ ...+.+|||||++.+...+..+++.+|+++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 3568999999999999999999999776 3345555554332 33333 366779999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 111 YVIDSADVKRFEESG-FELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+|||++++.++..+. .|+..+.... +++|+++|+||+|+.+..
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~ 150 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDK 150 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccch
Confidence 999999999999987 5666655443 578999999999997653
No 93
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.90 E-value=4e-24 Score=147.98 Aligned_cols=118 Identities=22% Similarity=0.338 Sum_probs=85.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE---EEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK---SVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~---~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
.+.+||+++|++|||||||++++.+... ..+.++.+.... .+......+.+||+||++++...+..+++.+|++++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 4579999999999999999999997763 334455443221 122234677899999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 112 VIDSADVKRFEESG-FELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 112 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|+|++++.++..+. .|+..+.... ++.|+++|+||+|+.+.+
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~ 128 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDK 128 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCc
Confidence 99999999999987 5766665543 378999999999997653
No 94
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=9e-23 Score=145.55 Aligned_cols=121 Identities=17% Similarity=0.241 Sum_probs=91.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC--CccCCcce--eEEEEEEeCC--eEEEEEeCCCCCC-ChhhHHhhcccCCE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDI--SHITPTQG--FNIKSVQSEG--FKLNVWDIGGQRK-IRPYWRNYFDNTDI 108 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~--~~~~~~~~--~~~~~~~~~~--~~~~l~D~~G~~~-~~~~~~~~~~~~d~ 108 (162)
...+||+++|++|||||||++++.+... ....++.+ .....+..++ ..+.+|||+|+.. +......+++.+|+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 4569999999999999999999986542 22223333 2234455554 5678999999877 44556677889999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 109 LIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~ 162 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCRE 162 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCce
Confidence 999999999999999988887776543335789999999999976443
No 95
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.90 E-value=3.8e-23 Score=145.90 Aligned_cols=118 Identities=20% Similarity=0.331 Sum_probs=94.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEE-EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNI-KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
....+||+++|++|||||||++++.+... ..+.++.+... ..+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 34579999999999999999999998763 33445555332 3344444 68999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 111 YVIDSADVKRFEESG-FELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+|||++++.++..+. .|+..+.... ++.|+++|+||+|+.+.
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQD 144 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcC
Confidence 999999999999984 5655554432 47899999999999865
No 96
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.90 E-value=1.3e-23 Score=147.81 Aligned_cols=119 Identities=24% Similarity=0.299 Sum_probs=86.7
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeE----EEEEE-eCCeEEEEEeCCCCCCChhhH---Hhhcc
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFN----IKSVQ-SEGFKLNVWDIGGQRKIRPYW---RNYFD 104 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~----~~~~~-~~~~~~~l~D~~G~~~~~~~~---~~~~~ 104 (162)
....+.+||+++|++|||||||++++.+............. ...+. .....+.+||+||++++.... ..+++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 34556899999999999999999988876533222111211 11222 345899999999999987776 78999
Q ss_pred cCCEEEEEEECCCh--hhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 105 NTDILIYVIDSADV--KRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 105 ~~d~vl~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
.+|++++|||++++ +++.....|+....... +++|+++|+||+|+..
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKVN--PDMNFEVFIHKVDGLS 143 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC--TTCEEEEEEECGGGSC
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC--CCCcEEEEEeccccCc
Confidence 99999999999987 66666777777654332 4899999999999865
No 97
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=6.4e-23 Score=145.37 Aligned_cols=118 Identities=21% Similarity=0.351 Sum_probs=91.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCcceeEE-EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDIS-HITPTQGFNI-KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~-~~~~~~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
...++||+++|++|||||||++++.+.... .+.++.+... ..+..++ ..+.+|||||+..+...+..+++.+|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 345789999999999999999999987743 3445555443 3344444 68999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 111 YVIDSADVKRFEES-GFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 111 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSD 144 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhcc
Confidence 99999999999988 45665554432 47899999999999765
No 98
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.90 E-value=3.1e-23 Score=155.63 Aligned_cols=115 Identities=21% Similarity=0.323 Sum_probs=95.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCC----CccCCcceeEEEEEEe-CCeEEEEEeCCCCCCC-----hhhHHhhcccC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDI----SHITPTQGFNIKSVQS-EGFKLNVWDIGGQRKI-----RPYWRNYFDNT 106 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~----~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~-----~~~~~~~~~~~ 106 (162)
.++||+++|++|||||||++++.+... ....+|.+.....+.. ++..+.+|||||+.++ ...+..+++.+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 578999999999999999999988742 2456778877777765 5789999999999988 67778889999
Q ss_pred CEEEEEEECCChhhHHHHHHHHH---HHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 107 DILIYVIDSADVKRFEESGFELH---ELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 107 d~vl~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
|++++|||++++.++..+..|.. .+... .+++|+++|+||+|+.+
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSC
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccc
Confidence 99999999999999998866643 33322 25799999999999986
No 99
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.90 E-value=8.7e-24 Score=147.28 Aligned_cols=115 Identities=18% Similarity=0.387 Sum_probs=88.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC---CCccCCcceeEEEEEEe-------CCeEEEEEeCCCCCCChhhHHhhcccCC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASED---ISHITPTQGFNIKSVQS-------EGFKLNVWDIGGQRKIRPYWRNYFDNTD 107 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~---~~~~~~~~~~~~~~~~~-------~~~~~~l~D~~G~~~~~~~~~~~~~~~d 107 (162)
.+||+++|++|||||||++++.+.. ...+.+|.+........ ....+.+||++|++.+...++.+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 5799999999999999999999853 33456677765544322 4578999999999988888888999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 108 ILIYVIDSADV-KRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 108 ~vl~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++++|+|++++ .++..+..|+..+.... ++.|+++|+||+|+.+.
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 127 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDE 127 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCH
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccc
Confidence 99999999987 57888888888776543 47899999999999754
No 100
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=5.2e-24 Score=149.02 Aligned_cols=123 Identities=25% Similarity=0.393 Sum_probs=91.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhccc----CCEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDN----TDILI 110 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~----~d~vl 110 (162)
..+.++|+++|++|||||||++++.+.......++...+. ........+.+|||||+..+...+..+++. +|+++
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i 123 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI 123 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce-eeeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEE
Confidence 4567899999999999999999999876432111111111 112256788999999999988777777766 89999
Q ss_pred EEEECC-ChhhHHHHHHHHHHHhhCC---CCCCCcEEEEEeCCCCCCCCCCC
Q psy689 111 YVIDSA-DVKRFEESGFELHELLSDE---KLTGVPLLVYANKQDLLGAAPAG 158 (162)
Q Consensus 111 ~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~~iivv~nK~Dl~~~~~~~ 158 (162)
+|+|++ +..++.....|+..+.... ...+.|+++|+||+|+.+....+
T Consensus 124 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 175 (193)
T 2ged_A 124 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 175 (193)
T ss_dssp EEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred EEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHH
Confidence 999999 8899999888887776532 12478999999999998876543
No 101
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.88 E-value=1.1e-21 Score=137.63 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=87.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC--CCccCCcce--eEEEEEEeCC--eEEEEEeCCCCCC-ChhhHHhhcccCCE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED--ISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQRK-IRPYWRNYFDNTDI 108 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~--~~~~~~~~~--~~~~~~~~~~--~~~~l~D~~G~~~-~~~~~~~~~~~~d~ 108 (162)
...+||+++|++|||||||++++.+.. +....++.+ .....+..++ ..+.+|||+|+.. +......+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 346899999999999999999998643 222222233 2234455554 5678999999776 44456677888999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 109 LIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+++|||++++++|..+..|+..+.......++|+++|+||+|+...+
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r 130 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXR 130 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccc
Confidence 99999999999999998888776654333578999999999997543
No 102
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.88 E-value=1.7e-22 Score=151.84 Aligned_cols=112 Identities=23% Similarity=0.297 Sum_probs=85.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC----ccCCcceeEEEEEEeCCeEEEEEeCCCCCCChh---hHHhhcccCCEEEEE
Q psy689 40 RILLLGLDNAGKTTILKTLASEDIS----HITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRP---YWRNYFDNTDILIYV 112 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~~~~~~~~~d~vl~v 112 (162)
||+++|+.|||||||++++.+.... .+.||.+.....+ ....++++|||+|+++|.. .+..++++++++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-ccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 6899999999999999988766432 3567888776665 2458999999999999964 468899999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhC--CCCCCCcEEEEEeCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSD--EKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~iivv~nK~Dl~~~ 154 (162)
||++++ +.....||..++.. ...+++|+++||||+|+..+
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 999987 33444444333221 11258999999999999864
No 103
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=9.5e-23 Score=145.31 Aligned_cols=121 Identities=26% Similarity=0.396 Sum_probs=93.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhccc----CCEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDN----TDILI 110 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~----~d~vl 110 (162)
..+.++|+++|++|||||||+++|.+.......+....+.. .......+.+||+||+..+...+..+++. +|+++
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i 87 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI 87 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEE-TTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEE-EEeeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEE
Confidence 45678999999999999999999998774332111111111 11255789999999999999888888887 89999
Q ss_pred EEEECC-ChhhHHHHHHHHHHHhhCC---CCCCCcEEEEEeCCCCCCCCC
Q psy689 111 YVIDSA-DVKRFEESGFELHELLSDE---KLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 111 ~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|+|++ +++++.....|+..+.... ...++|+++|+||+|+...+.
T Consensus 88 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 88 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp EEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred EEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 999999 8889999888888876542 225799999999999987765
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.87 E-value=7e-22 Score=136.19 Aligned_cols=116 Identities=22% Similarity=0.250 Sum_probs=86.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCc-cCC--cceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDISH-ITP--TQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~~~-~~~--~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
..++.++|+++|++|||||||++++.+..... ..+ +.......+..++..+.+|||||+..+...+..+++.+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 34678999999999999999999999876332 122 222333456677889999999999999988888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+|+|++++..... ...+..... .+.|+++|+||+|+.+.
T Consensus 84 ~v~d~~~~~~~~~-~~~l~~~~~----~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 84 LVVAADDGVMPQT-VEAINHAKA----ANVPIIVAINKMDKPEA 122 (178)
T ss_dssp EEEETTCCCCHHH-HHHHHHHGG----GSCCEEEEEETTTSSCS
T ss_pred EEEECCCCCcHHH-HHHHHHHHh----CCCCEEEEEECccCCcC
Confidence 9999987432221 122222222 37899999999999864
No 105
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.87 E-value=1.2e-21 Score=147.42 Aligned_cols=119 Identities=18% Similarity=0.294 Sum_probs=95.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEE-EEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNI-KSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDIL 109 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~v 109 (162)
.....++|+++|++|||||||++++.+.. ...+.++.+... ..+..++ ..+.+||+||+..+...+..+++.+|++
T Consensus 151 ~~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 230 (332)
T 2wkq_A 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 230 (332)
T ss_dssp HHTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEE
T ss_pred cccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEE
Confidence 34567999999999999999999998776 344556655443 3344444 5666999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 110 IYVIDSADVKRFEESG-FELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 110 l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++|||++++.++..+. .|+..+.... +++|+++|+||+|+...
T Consensus 231 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 231 LICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDD 274 (332)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccc
Confidence 9999999999999987 4666655443 37899999999999654
No 106
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.87 E-value=5.7e-21 Score=137.30 Aligned_cols=128 Identities=14% Similarity=0.168 Sum_probs=86.8
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCc--c-CCcceeEEEEEEeCCeEEEEEeCCCCC------CC---
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISH--I-TPTQGFNIKSVQSEGFKLNVWDIGGQR------KI--- 95 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~--~-~~~~~~~~~~~~~~~~~~~l~D~~G~~------~~--- 95 (162)
.+.++...++.++|+++|++|||||||+++|.+..... . ..+.......+...+..+.+|||||+. ..
T Consensus 19 ~~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 98 (228)
T 2qu8_A 19 FQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIE 98 (228)
T ss_dssp ---CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHH
T ss_pred eccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHH
Confidence 44455556778999999999999999999999887431 1 113334444556677899999999983 31
Q ss_pred hhhHHhhcccCCEEEEEEECCChhhHHH--HHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 96 RPYWRNYFDNTDILIYVIDSADVKRFEE--SGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 96 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
...+..++..+|++++|+|++++.++.. ...|+..+... .++.|+++|+||+|+.+.+..
T Consensus 99 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~ 160 (228)
T 2qu8_A 99 MTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSL 160 (228)
T ss_dssp HHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CC
T ss_pred HHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhh
Confidence 1222345678899999999999877652 23455554433 247899999999999876543
No 107
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.87 E-value=1.5e-21 Score=134.67 Aligned_cols=116 Identities=21% Similarity=0.395 Sum_probs=85.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCccCC----cceeEEEEEEeCCeEEEEEeCCCCCCChhh--------HHhhcc
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDISHITP----TQGFNIKSVQSEGFKLNVWDIGGQRKIRPY--------WRNYFD 104 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~~~ 104 (162)
+..+|+++|++|||||||++++.+.......+ +.......+..++..+.+|||||+.++... ...+++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 46899999999999999999999876322222 233445567778888999999998764321 123578
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 105 NTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 105 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
.+|++++|+|++++.++. ...|+..+.... ..++|+++|+||+|+.+.
T Consensus 83 ~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~ 130 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVD-PAEIWPEFIARL-PAKLPITVVRNKADITGE 130 (172)
T ss_dssp TCSEEEEEEETTTCCCCS-HHHHCHHHHHHS-CTTCCEEEEEECHHHHCC
T ss_pred hCCEEEEEEECCCCCCHH-HHHHHHHHHHhc-ccCCCEEEEEECccCCcc
Confidence 999999999999887765 345665555433 247899999999999643
No 108
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.78 E-value=1.1e-23 Score=148.89 Aligned_cols=119 Identities=19% Similarity=0.308 Sum_probs=92.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEE-E--EEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIK-S--VQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~-~--~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
..+.+||+++|++|||||||++++.+... ..+.++.+.... . +......+.+|||||+.++...+..+++.+|+++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 35679999999999999999999987663 333444443222 2 2234467789999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 111 YVIDSADVKRFEESG-FELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+|||++++.++..+. .|+..+.... ++.|+++|+||+|+.+..
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~ 150 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDK 150 (204)
Confidence 999999999999887 5655544332 378999999999998654
No 109
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.85 E-value=8.5e-21 Score=129.92 Aligned_cols=111 Identities=26% Similarity=0.385 Sum_probs=80.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCc--ceeEEEEEEeCCeEEEEEeCCCCCCCh------hhHHhhcc--cC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDIS-HITPT--QGFNIKSVQSEGFKLNVWDIGGQRKIR------PYWRNYFD--NT 106 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~-~~~~~--~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~--~~ 106 (162)
.++|+++|++|||||||++++.+.... ...|+ .......+..++..+.+|||||+..+. .....+++ .+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 579999999999999999999986521 11222 223344566678899999999998875 33355554 79
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 107 DILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 107 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|++++|+|+++.+. ...|+..+.. .+.|+++|+||+|+...+
T Consensus 83 ~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~ 124 (165)
T 2wji_A 83 DLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSL 124 (165)
T ss_dssp SEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHT
T ss_pred CEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhcccc
Confidence 99999999987543 3446655544 268999999999986543
No 110
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.85 E-value=6.4e-21 Score=129.24 Aligned_cols=111 Identities=17% Similarity=0.349 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCccCCc----ceeEEEEEEeCCeEEEEEeCCCCCC-------ChhhHHhhcccCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDISHITPT----QGFNIKSVQSEGFKLNVWDIGGQRK-------IRPYWRNYFDNTD 107 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~d 107 (162)
.||+++|++|||||||++++.+.......+. .......+...+..+.+|||||+.. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 5899999999999999999998763322222 2234456667788999999999887 3445566789999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 108 ILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 108 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++++|+|++++.+.. ..++...... .+.|+++|+||+|+.+.
T Consensus 82 ~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 82 VVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKH 123 (161)
T ss_dssp EEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGG
T ss_pred EEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccc
Confidence 999999998754432 2333333332 37899999999999765
No 111
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.85 E-value=1.7e-20 Score=132.02 Aligned_cols=118 Identities=24% Similarity=0.398 Sum_probs=92.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeE--EEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFN--IKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
..++++++|++|||||||++++.+... ..+.|+.+.. ...+..++ ..+.+||++|+..+...+..+++.++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 468999999999999999999998863 3344555433 34555555 577899999999988888888899999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|+|+++..++..+..|+..+.... ..+.|+++|+||+|+.+.+
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~ 126 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLR 126 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGC
T ss_pred EEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECccccccc
Confidence 999999989888877876654432 2478999999999997543
No 112
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.85 E-value=9.4e-21 Score=139.10 Aligned_cols=132 Identities=17% Similarity=0.233 Sum_probs=90.5
Q ss_pred hHHHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCC----cceeEEEEEEeCCeEEEEEeCCCCCCChhh
Q psy689 23 GLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITP----TQGFNIKSVQSEGFKLNVWDIGGQRKIRPY 98 (162)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 98 (162)
.+...++.+.....+.++|+++|++|+|||||+++|++.......+ +.......+...+..+.+|||||+.++...
T Consensus 21 ~l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~ 100 (262)
T 3def_A 21 KLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYV 100 (262)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEE
T ss_pred HHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccc
Confidence 3344444555555678999999999999999999999887433333 333445567778899999999999887654
Q ss_pred HHhhcc---------cCCEEEEEEECCChhhHHHH-HHHHHHHhhCCC-CCCCcEEEEEeCCCCCCCC
Q psy689 99 WRNYFD---------NTDILIYVIDSADVKRFEES-GFELHELLSDEK-LTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 99 ~~~~~~---------~~d~vl~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~~ 155 (162)
...+++ .+|++++|++++... +... ..|+..+..... ....|+++|+||+|+...+
T Consensus 101 ~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~ 167 (262)
T 3def_A 101 NHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPD 167 (262)
T ss_dssp CHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCST
T ss_pred hHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCC
Confidence 433332 789999999987643 3333 244444433211 1124999999999996543
No 113
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.84 E-value=5e-20 Score=138.22 Aligned_cols=117 Identities=21% Similarity=0.305 Sum_probs=91.1
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcce----eEEEEEEeC-CeEEEEEeCCCCCCCh----------h
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQG----FNIKSVQSE-GFKLNVWDIGGQRKIR----------P 97 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~----~~~~~~~~~-~~~~~l~D~~G~~~~~----------~ 97 (162)
+..++.-.|+++|++|||||||+|+|.+......++..+ .....+... +..+.+|||||+.+.. .
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 456678899999999999999999999988554443333 334455666 8999999999987654 4
Q ss_pred hHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 98 YWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 98 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
....+++.+|++++|+|+++..++.....|+..+.. .+.|+++|+||+|+.+
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~ 136 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIG 136 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSS
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCC
Confidence 556778999999999999988887776666665544 3789999999999973
No 114
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.83 E-value=9.5e-20 Score=127.65 Aligned_cols=119 Identities=23% Similarity=0.393 Sum_probs=94.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeE--EEEEEeCC--eEEEEEeCCCCCCChhhHHhhcccCCEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFN--IKSVQSEG--FKLNVWDIGGQRKIRPYWRNYFDNTDILI 110 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vl 110 (162)
...++++++|++|||||||++++.+... ..+.++.+.. ...+..++ ..+.+||++|+.++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 4468999999999999999999998774 3455666643 34555555 45677999999999888888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 111 YVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+|+|.++..+++.+..|+..+.... ....|+++++||+|+.+.+
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~ 150 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLR 150 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccccccc
Confidence 9999999988888777776654322 2468999999999997543
No 115
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.83 E-value=8.6e-20 Score=126.88 Aligned_cols=112 Identities=28% Similarity=0.397 Sum_probs=84.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCC-CccCC--cceeEEEEEEeCCeEEEEEeCCCCCCCh------hhHHhhcc--c
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDI-SHITP--TQGFNIKSVQSEGFKLNVWDIGGQRKIR------PYWRNYFD--N 105 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~--~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~--~ 105 (162)
+.++|+++|++|||||||++++.+... ....+ +.......+..++..+.+|||||+..+. ..+..++. .
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 85 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccC
Confidence 578999999999999999999998652 11122 2334455677788999999999998874 34555654 4
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 106 TDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 106 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+|++++|+|.++ +.....|+..+.. .+.|+++|+||+|+...+
T Consensus 86 ~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~ 128 (188)
T 2wjg_A 86 PDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSL 128 (188)
T ss_dssp CSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHT
T ss_pred CCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccc
Confidence 999999999875 4455566666554 378999999999987544
No 116
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.83 E-value=8.1e-21 Score=132.81 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=77.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEEE--EEEeCCeEEEEEeCCC----------CCCChhhHHh
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK--SVQSEGFKLNVWDIGG----------QRKIRPYWRN 101 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~--~~~~~~~~~~l~D~~G----------~~~~~~~~~~ 101 (162)
....++|+++|++|||||||++++.+.. ...+.++.+.+.. .+.. +..+.+||||| +..+...+..
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 3567999999999999999999999886 4445555553322 2222 34799999999 5556666777
Q ss_pred hcccC---CEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 102 YFDNT---DILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 102 ~~~~~---d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+++.+ |++++|+|++++.++.... .+.. +.. .+.|+++|+||+|+.+.+
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~-~~~---~~~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDVQ-MYEF-LKY---YGIPVIVIATKADKIPKG 150 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHH-HHHH-HHH---TTCCEEEEEECGGGSCGG
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHHH-HHHH-HHH---cCCCEEEEEECcccCChH
Confidence 77777 9999999999877665532 1112 211 478999999999998754
No 117
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.83 E-value=1.5e-19 Score=135.18 Aligned_cols=116 Identities=19% Similarity=0.210 Sum_probs=84.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCc----ceeEEEEEEeCCeEEEEEeCCCCCC--------ChhhHHhhc
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPT----QGFNIKSVQSEGFKLNVWDIGGQRK--------IRPYWRNYF 103 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~ 103 (162)
.+..+|+++|.+|||||||+|+|++......++. .......+...+.++.+|||||+.+ +......++
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 3456899999999999999999998875433222 2222334556789999999999877 344556778
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 104 DNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 104 ~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+.+|++++|+|++++.+.. ..|+...+... .++.|+++|+||+|+.+.
T Consensus 85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKY 132 (301)
T ss_dssp SSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSS
T ss_pred hcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCc
Confidence 9999999999998764433 34544333322 147899999999999764
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.82 E-value=8.4e-20 Score=133.86 Aligned_cols=114 Identities=20% Similarity=0.276 Sum_probs=84.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCC-cc--CCcceeEEEEEEeCCeEEEEEeCCCCCCChh------hHHhhc--c
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDIS-HI--TPTQGFNIKSVQSEGFKLNVWDIGGQRKIRP------YWRNYF--D 104 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~-~~--~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~--~ 104 (162)
.+.++|+++|++|||||||+++|.+.... .. ..+.......+...+..+.+|||||+..+.. ....++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 45789999999999999999999987632 11 1233334455666789999999999988764 224455 5
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 105 NTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 105 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
.+|++++|+|+++.++. ..|+.++.. .+.|+++|+||+|+...+.
T Consensus 83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~ 127 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTG 127 (258)
T ss_dssp CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTT
T ss_pred CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccc
Confidence 89999999999986543 345555544 3789999999999865443
No 119
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.82 E-value=1.4e-19 Score=133.66 Aligned_cols=112 Identities=26% Similarity=0.374 Sum_probs=81.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCC--c-cCCcceeEEEEEEeCCeEEEEEeCCCCCCChh----------hHHhhc
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDIS--H-ITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRP----------YWRNYF 103 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~~--~-~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~~~~~~ 103 (162)
++++|+++|.+|||||||+|+|.+.... . ...|.......+...+..+.+|||||+.++.. ....++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 3689999999999999999999987621 1 11223344556666778999999999888762 223333
Q ss_pred --ccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 104 --DNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 104 --~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+.+|++++|+|+++.++......++.+. ++|+++|+||+|+.+.+
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~-------~~p~ivv~NK~Dl~~~~ 128 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLEL-------GIPCIVALNMLDIAEKQ 128 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-------TCCEEEEEECHHHHHHT
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHhc-------CCCEEEEEECccchhhh
Confidence 6899999999999865544444443332 78999999999986543
No 120
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.82 E-value=4e-20 Score=128.97 Aligned_cols=113 Identities=18% Similarity=0.273 Sum_probs=81.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEE-EEEeCCeEEEEEeCCC----------CCCChhhHHhhc
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIK-SVQSEGFKLNVWDIGG----------QRKIRPYWRNYF 103 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~D~~G----------~~~~~~~~~~~~ 103 (162)
....++|+++|++|||||||++++.+.......++.+.+.. .....+..+.+||||| +..+...+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYF 99 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHH
Confidence 45678999999999999999999999886666666654332 2222345788999999 445566666676
Q ss_pred ccC---CEEEEEEECCChhhHHH--HHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 104 DNT---DILIYVIDSADVKRFEE--SGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 104 ~~~---d~vl~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+.+ |++++|+|+++..+... ...|+.. .+.|+++|+||+|+.+.
T Consensus 100 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 100 KNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKVKM 148 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCG
T ss_pred hcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcCCh
Confidence 665 99999999887543322 2233332 26899999999999754
No 121
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.82 E-value=6.1e-20 Score=139.88 Aligned_cols=85 Identities=24% Similarity=0.500 Sum_probs=76.3
Q ss_pred CcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHhhCCCC
Q psy689 68 PTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLSDEKL 137 (162)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~----------~~~~~~~~~~~~~~~~~~~~ 137 (162)
+|.|+....+..++..+.+||++|++.++..|..++++++++|+|||+++ ..++.....|+..+......
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 46677777788889999999999999999999999999999999999998 46799999999998887666
Q ss_pred CCCcEEEEEeCCCCC
Q psy689 138 TGVPLLVYANKQDLL 152 (162)
Q Consensus 138 ~~~~iivv~nK~Dl~ 152 (162)
.++|++||+||+|+.
T Consensus 259 ~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 259 TDTSIILFLNKKDLF 273 (353)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred cCCcEEEEEECcCch
Confidence 789999999999995
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.82 E-value=8.4e-20 Score=133.71 Aligned_cols=110 Identities=22% Similarity=0.237 Sum_probs=81.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--c-cCCcceeEEEEEEeCCeEEEEEeCCCCCCChh----------hHHhhc--
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDIS--H-ITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRP----------YWRNYF-- 103 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~--~-~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~~~~~~-- 103 (162)
.+|+++|.+|||||||+|+|.+.... . ...|.......+...+..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 37999999999999999999988621 1 12233344556777888999999999987764 445566
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 104 DNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 104 ~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+.+|++++|+|+++.++......+ +.. .+.|+++|+||+|+...+
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~~---l~~----~~~pvilv~NK~Dl~~~~ 126 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTSQ---LFE----LGKPVVVALNMMDIAEHR 126 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHHH---HTT----SCSCEEEEEECHHHHHHT
T ss_pred CCCCEEEEEeeCCCchhHHHHHHH---HHH----cCCCEEEEEEChhcCCcC
Confidence 889999999999986554433333 222 278999999999987554
No 123
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.81 E-value=3.9e-20 Score=135.35 Aligned_cols=121 Identities=15% Similarity=0.129 Sum_probs=83.9
Q ss_pred CCCCceEEEEEcCC---------CCCHHHHHHHHhcC---C-CCccCCcc-eeEE--E----------------EEEeCC
Q psy689 34 SPEKELRILLLGLD---------NAGKTTILKTLASE---D-ISHITPTQ-GFNI--K----------------SVQSEG 81 (162)
Q Consensus 34 ~~~~~~~v~viG~~---------~sGKStli~~l~~~---~-~~~~~~~~-~~~~--~----------------~~~~~~ 81 (162)
...+.+||+++|++ |||||||+++|.+. . ...+.++. +..+ . .+....
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 45567999999999 99999999999984 3 22233332 1110 0 122345
Q ss_pred eEEEEEe-----------------------CCCCCCChhhHHhhcc---------------------cCCEEEEEEECCC
Q psy689 82 FKLNVWD-----------------------IGGQRKIRPYWRNYFD---------------------NTDILIYVIDSAD 117 (162)
Q Consensus 82 ~~~~l~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~vl~v~d~~~ 117 (162)
..+.+|| ++|++++...+..+++ .+|++++|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 7899999 5566666666666666 7999999999999
Q ss_pred h--hhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 118 V--KRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 118 ~--~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+ .+|+.+..|+..+.......++|+++|+||+|+.+.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~ 213 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE 213 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc
Confidence 8 899999888887765422247899999999999643
No 124
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.81 E-value=4e-19 Score=129.43 Aligned_cols=120 Identities=15% Similarity=0.209 Sum_probs=80.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCcc-----CCcceeEEEEEEeCCeEEEEEeCCCC--------CCChhhHH
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDISHI-----TPTQGFNIKSVQSEGFKLNVWDIGGQ--------RKIRPYWR 100 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~D~~G~--------~~~~~~~~ 100 (162)
...+.++|+++|.+|||||||+|++++...... ..|.......+...+..+.+|||||. ..+.....
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 345689999999999999999999998873321 13444556677788899999999997 33333333
Q ss_pred hhc----ccCCEEEEEEECCChhhHH-HHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 101 NYF----DNTDILIYVIDSADVKRFE-ESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 101 ~~~----~~~d~vl~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
.++ +.+|++|+|+|+++..... .+..++...... ...+.|+++|+||.|+.+.
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCC
Confidence 333 8999999999998532211 122333333211 1136799999999999764
No 125
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.81 E-value=5.6e-21 Score=132.93 Aligned_cols=115 Identities=18% Similarity=0.230 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-ccCCcceeEEEEEEeCCeEEEEEeCCC-----------CCCChhhHHhhccc-
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDIS-HITPTQGFNIKSVQSEGFKLNVWDIGG-----------QRKIRPYWRNYFDN- 105 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~G-----------~~~~~~~~~~~~~~- 105 (162)
+||+++|++|||||||++++.+.... ...|+.......+... .+.+||||| ++.+...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 58999999999999999999988732 2223222222233333 689999999 45555666666666
Q ss_pred CCEEEEEEECCChhhHHHH-HHHHHH--------HhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 106 TDILIYVIDSADVKRFEES-GFELHE--------LLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 106 ~d~vl~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
++++++++++.+..++..+ ..|... +.......+.|+++|+||+|+.+.+
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence 6655555555555566665 334321 1111112478999999999998753
No 126
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.81 E-value=1.5e-19 Score=136.70 Aligned_cols=87 Identities=30% Similarity=0.534 Sum_probs=79.0
Q ss_pred CCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECC----------ChhhHHHHHHHHHHHhhCCC
Q psy689 67 TPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSA----------DVKRFEESGFELHELLSDEK 136 (162)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~----------~~~~~~~~~~~~~~~~~~~~ 136 (162)
.+|.|+....+..++..+++||++|++.++..|..++++++++|+|+|++ +..++.....|+..+.....
T Consensus 146 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 146 TKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp CCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred cceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 35677888888889999999999999999999999999999999999998 77899999999999988776
Q ss_pred CCCCcEEEEEeCCCCCC
Q psy689 137 LTGVPLLVYANKQDLLG 153 (162)
Q Consensus 137 ~~~~~iivv~nK~Dl~~ 153 (162)
..++|+++++||+|+.+
T Consensus 226 ~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GTTSEEEEEEECHHHHH
T ss_pred cCCCeEEEEEECchhhh
Confidence 67899999999999865
No 127
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.81 E-value=3.1e-19 Score=131.49 Aligned_cols=132 Identities=20% Similarity=0.265 Sum_probs=86.7
Q ss_pred hHHHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcce----eEEEEEEeCCeEEEEEeCCCCCCChhh
Q psy689 23 GLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQG----FNIKSVQSEGFKLNVWDIGGQRKIRPY 98 (162)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~D~~G~~~~~~~ 98 (162)
.+...++.........++|+++|++|+|||||+|+|++.......+..+ .....+...+..+.+|||||+.++...
T Consensus 24 ~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~ 103 (270)
T 1h65_A 24 KLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYI 103 (270)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEE
T ss_pred HHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccc
Confidence 3344444444444568999999999999999999999887433333222 334456667889999999998776422
Q ss_pred H-------Hhh--cccCCEEEEEEECCChhhHHHH-HHHHHHHhhCCC-CCCCcEEEEEeCCCCCCCC
Q psy689 99 W-------RNY--FDNTDILIYVIDSADVKRFEES-GFELHELLSDEK-LTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 99 ~-------~~~--~~~~d~vl~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~~ 155 (162)
. ..+ .+.+|++++|+|++.. ++... ..|+..+..... ....|+++|+||+|+...+
T Consensus 104 ~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 104 NDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp CHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 1 111 3468999999998653 33332 345444433211 1126999999999987544
No 128
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.81 E-value=2e-19 Score=143.90 Aligned_cols=118 Identities=24% Similarity=0.385 Sum_probs=87.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCC-CccCCcceeEEEEEE------------eCCeEEEEEeCCCCCCChhhHH
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDI-SHITPTQGFNIKSVQ------------SEGFKLNVWDIGGQRKIRPYWR 100 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~------------~~~~~~~l~D~~G~~~~~~~~~ 100 (162)
...+.+||+++|.+|||||||++++.+..+ ..+.++.+....+.. .....+.+||+||++.+...+.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 356689999999999999999999998773 445567766554331 1258999999999999999999
Q ss_pred hhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 101 NYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 101 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
.+++.+|++++|+|+++.+ ....|+..+.... ++.|+++|+||+|+.+.+.
T Consensus 117 ~~l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~ 167 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDS---NKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYN 167 (535)
T ss_dssp HHHHSSEEEEEEECGGGGG---GHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCC
T ss_pred HHccCCcEEEEEEeCCCch---hHHHHHHHHHHhC--CCCCEEEEEECCCcccccc
Confidence 9999999999999998653 4556666665543 3689999999999987654
No 129
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=130.75 Aligned_cols=122 Identities=18% Similarity=0.143 Sum_probs=78.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCcc-----CCcceeEEEEEEeCCeEEEEEeCCCCCC-----------Chhh
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHI-----TPTQGFNIKSVQSEGFKLNVWDIGGQRK-----------IRPY 98 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~D~~G~~~-----------~~~~ 98 (162)
....++|+++|++|||||||+|++++...... ..+.......+...+..+.+|||||..+ +...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999998774221 2233445556777889999999999543 3333
Q ss_pred HHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCC-CCCCcEEEEEeCCCCCCCCCCC
Q psy689 99 WRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEK-LTGVPLLVYANKQDLLGAAPAG 158 (162)
Q Consensus 99 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~~~~~ 158 (162)
+..+++.+|++|+|+|+++.... ...++..+..... ....|+++|+||+|+.+....+
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------
T ss_pred HHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHH
Confidence 44556778999999998764432 1222222221100 0245999999999998765443
No 130
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.80 E-value=2.2e-19 Score=141.69 Aligned_cols=114 Identities=21% Similarity=0.271 Sum_probs=71.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcce----eEEEEEEeCCeEEEEEeCCCCCCChhhH--------Hhhcc
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQG----FNIKSVQSEGFKLNVWDIGGQRKIRPYW--------RNYFD 104 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~D~~G~~~~~~~~--------~~~~~ 104 (162)
..++|+++|++|||||||+|+|.+......++..+ .....+..++..+.+|||||+..+...+ ..+++
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence 46899999999999999999999886333333333 3344577788999999999987765443 34678
Q ss_pred cCCEEEEEEECCChhhHHH---HHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 105 NTDILIYVIDSADVKRFEE---SGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 105 ~~d~vl~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
.+|++++|+|++++.++.. ...|+..+ .+.|+++|+||+|+.....
T Consensus 312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~ 360 (476)
T 3gee_A 312 EADLILYLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANAD 360 (476)
T ss_dssp SCSEEEEEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTH
T ss_pred cCCEEEEEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccc
Confidence 9999999999998877643 22333322 2689999999999987653
No 131
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.80 E-value=7.9e-19 Score=129.38 Aligned_cols=111 Identities=25% Similarity=0.272 Sum_probs=83.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCC-ccCC--cceeEEEEEEeCCeEEEEEeCCCCCCChh------hHHhhc--ccC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDIS-HITP--TQGFNIKSVQSEGFKLNVWDIGGQRKIRP------YWRNYF--DNT 106 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~--~~~ 106 (162)
.++|+++|++|||||||+++|.+.... ...+ +.......+...+..+.+|||||+..+.. ....++ ..+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNA 82 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCC
Confidence 579999999999999999999987631 1112 23344556777888999999999888766 455555 689
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 107 DILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 107 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
|++++|+|+++.+ ....++..+... ...|+++|+||+|+...
T Consensus 83 d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~ 124 (271)
T 3k53_A 83 DVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKK 124 (271)
T ss_dssp SEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHH
T ss_pred cEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcc
Confidence 9999999998753 444555555543 23899999999997643
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.80 E-value=5.5e-19 Score=138.38 Aligned_cols=110 Identities=22% Similarity=0.334 Sum_probs=75.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeE----EEEEEeCCeEEEEEeCCCCCCC---------hhhHHhhccc
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFN----IKSVQSEGFKLNVWDIGGQRKI---------RPYWRNYFDN 105 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~D~~G~~~~---------~~~~~~~~~~ 105 (162)
.+|+++|.+|||||||+|+|.+.......+++|.+ ...+.+.+..+.+|||||+... ...+..+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 37999999999999999999988744444444543 4567778899999999997652 3445678899
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 106 TDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 106 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
+|++++|+|+++..+... .++..+++. .++|+++|+||+|+.+
T Consensus 82 ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLR 124 (439)
T ss_dssp CSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHH
T ss_pred CCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcc
Confidence 999999999987544332 233333322 3689999999999853
No 133
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.79 E-value=3.5e-19 Score=134.20 Aligned_cols=88 Identities=24% Similarity=0.465 Sum_probs=78.2
Q ss_pred CCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECC----------ChhhHHHHHHHHHHHhhCCC
Q psy689 67 TPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSA----------DVKRFEESGFELHELLSDEK 136 (162)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~----------~~~~~~~~~~~~~~~~~~~~ 136 (162)
.||.|+....+..++.++++||++|+++++..|..++++++++++|+|++ +..++.....|+..+.....
T Consensus 152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 46778888888899999999999999999999999999999999999654 67888889899999988776
Q ss_pred CCCCcEEEEEeCCCCCCC
Q psy689 137 LTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 137 ~~~~~iivv~nK~Dl~~~ 154 (162)
..++|+++++||+|+.+.
T Consensus 232 ~~~~~iiL~~NK~DL~~~ 249 (327)
T 3ohm_A 232 FQNSSVILFLNKKDLLEE 249 (327)
T ss_dssp GTTCEEEEEEECHHHHHH
T ss_pred cCCceEEEEEECchhhhh
Confidence 678999999999999753
No 134
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.79 E-value=2.4e-19 Score=140.28 Aligned_cols=116 Identities=17% Similarity=0.239 Sum_probs=84.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeE----EEEEEeCCeEEEEEeCCCCCC----------ChhhH-H
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFN----IKSVQSEGFKLNVWDIGGQRK----------IRPYW-R 100 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~D~~G~~~----------~~~~~-~ 100 (162)
+..++|+++|++|||||||+|++++......++..+.+ ...+..++..+.+|||||+.+ +...+ .
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 45799999999999999999999988743333333322 335666788999999999733 33222 2
Q ss_pred hhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 101 NYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 101 ~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
.+++.+|++++|+|++++.+++.. .|+..+.. .+.|+++|+||+|+.+.+.
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~ 303 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDE 303 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCT
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcch
Confidence 477889999999999988776664 45555443 4789999999999987654
No 135
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.79 E-value=1.3e-18 Score=134.23 Aligned_cols=85 Identities=27% Similarity=0.541 Sum_probs=75.9
Q ss_pred cceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHhhCCCCC
Q psy689 69 TQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLSDEKLT 138 (162)
Q Consensus 69 ~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 138 (162)
|.|+....+..++..+++|||+|++.++..|..++++++++++|||+++ ..+|.....|+..+.+.....
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 4556666677788999999999999999999999999999999999998 889999999999998876667
Q ss_pred CCcEEEEEeCCCCCC
Q psy689 139 GVPLLVYANKQDLLG 153 (162)
Q Consensus 139 ~~~iivv~nK~Dl~~ 153 (162)
++|++|||||+|+..
T Consensus 284 ~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 284 TISVILFLNKQDLLA 298 (402)
T ss_dssp SCCEEEEEECHHHHH
T ss_pred CCeEEEEEEChhhhh
Confidence 899999999999854
No 136
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.79 E-value=1.4e-19 Score=141.69 Aligned_cols=112 Identities=26% Similarity=0.389 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEE----EEEEeCCeEEEEEeCCCCC--------CChhhHHhhcccC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFNI----KSVQSEGFKLNVWDIGGQR--------KIRPYWRNYFDNT 106 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~D~~G~~--------~~~~~~~~~~~~~ 106 (162)
.+|+++|++|||||||+|+|.+.......+++|.+. ..+.+.+..+.+|||||+. .+...+..+++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 689999999999999999999887655666666543 3444567889999999985 4556667788999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 107 DILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 107 d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|++++|+|++++.+... .++..+++. .++|+++|+||+|+....
T Consensus 84 d~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~ 127 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMR 127 (436)
T ss_dssp SEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC----
T ss_pred CEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccch
Confidence 99999999987666443 455555543 478999999999997643
No 137
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.79 E-value=4.8e-19 Score=135.39 Aligned_cols=86 Identities=26% Similarity=0.547 Sum_probs=69.6
Q ss_pred CcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHhhCCCC
Q psy689 68 PTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD----------VKRFEESGFELHELLSDEKL 137 (162)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~----------~~~~~~~~~~~~~~~~~~~~ 137 (162)
+|.|+....+..++..+.+|||+|++.++..|..++++++++|+|+|+++ ..++.....|+..+.+....
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 35566777778888999999999999999999999999999999999998 67899999999998887666
Q ss_pred CCCcEEEEEeCCCCCC
Q psy689 138 TGVPLLVYANKQDLLG 153 (162)
Q Consensus 138 ~~~~iivv~nK~Dl~~ 153 (162)
.++|+++|+||+|+..
T Consensus 267 ~~~piILv~NK~DL~~ 282 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLE 282 (362)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred CCCCEEEEEEChhhhh
Confidence 7899999999999963
No 138
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.79 E-value=4.3e-19 Score=130.96 Aligned_cols=110 Identities=23% Similarity=0.402 Sum_probs=79.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCccCCccee----EEEEEEeCCeEEEEEeCCCCCCCh------hhHHhhcc--
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGF----NIKSVQSEGFKLNVWDIGGQRKIR------PYWRNYFD-- 104 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~-- 104 (162)
..++|+++|++|||||||+|+|.+... .....+|. ....+.. +..+.+|||||+..+. ...+.++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 357999999999999999999998752 11222232 2233333 6789999999998875 34555665
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 105 NTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 105 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
.+|++++|+|+++.++ ...|..++.. .++|+++|+||+|+...+
T Consensus 80 ~~d~vi~V~D~t~~e~---~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~ 123 (272)
T 3b1v_A 80 RADSILNVVDATNLER---NLYLTTQLIE----TGIPVTIALNMIDVLDGQ 123 (272)
T ss_dssp CCSEEEEEEEGGGHHH---HHHHHHHHHH----TCSCEEEEEECHHHHHHT
T ss_pred CCCEEEEEecCCchHh---HHHHHHHHHh----cCCCEEEEEEChhhCCcC
Confidence 6999999999987654 3345555544 378999999999986543
No 139
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.79 E-value=2.8e-19 Score=127.56 Aligned_cols=115 Identities=22% Similarity=0.246 Sum_probs=79.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcce----eEEEEEE-eCCeEEEEEeCCCCCC----------Chhh
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQG----FNIKSVQ-SEGFKLNVWDIGGQRK----------IRPY 98 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~----~~~~~~~-~~~~~~~l~D~~G~~~----------~~~~ 98 (162)
....++|+++|++|||||||+++|.+.. .....++.+ .....+. ..+..+.+|||||... +...
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 3457899999999999999999999886 333333333 2233333 3457899999999543 2444
Q ss_pred HHhhccc---CCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 99 WRNYFDN---TDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 99 ~~~~~~~---~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
...+++. +|++++|+|+++..+. ....++..+.. .+.|+++|+||+|+...
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~----~~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP----TGKPIHSLLTKCDKLTR 159 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG----GCCCEEEEEECGGGSCH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh----cCCCEEEEEeccccCCh
Confidence 5556655 7889999999875332 22233333332 47899999999999764
No 140
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.78 E-value=1.2e-17 Score=127.50 Aligned_cols=118 Identities=23% Similarity=0.300 Sum_probs=88.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCC---ccCCcceeEEEEEEeCCeEEEEEeCCCCCCCh---------hhHHhh
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDIS---HITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR---------PYWRNY 102 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~~ 102 (162)
....++++++|++|||||||+++|.+.... ....+.......+...+..+.+|||||..... ......
T Consensus 164 ~~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 164 DLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp CSSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 367889999999999999999999987621 12234455556666678899999999975532 112234
Q ss_pred cccCCEEEEEEECCChh--hHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 103 FDNTDILIYVIDSADVK--RFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 103 ~~~~d~vl~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
...+|++++|+|+++.. ++.....|+..+..... +.|+++|+||+|+.+.
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADE 295 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCH
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCCh
Confidence 45689999999998876 66777777777665432 7899999999999764
No 141
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.78 E-value=6.9e-18 Score=123.41 Aligned_cols=118 Identities=15% Similarity=0.197 Sum_probs=77.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCc--cC---CcceeEEEEEEeCCeEEEEEeCCCCCCChh-----------h
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISH--IT---PTQGFNIKSVQSEGFKLNVWDIGGQRKIRP-----------Y 98 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~--~~---~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-----------~ 98 (162)
..+.++|+++|++|||||||++++++..... .. .|.......+.+.+..+.+|||||+.++.. .
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 4457999999999999999999999876221 12 234445556777889999999999766532 2
Q ss_pred HHhhcccCCEEEEEEECCChhhHH-HHHHHHHHHhhCCCCCCCcEEEEEe-CCCCCCC
Q psy689 99 WRNYFDNTDILIYVIDSADVKRFE-ESGFELHELLSDEKLTGVPLLVYAN-KQDLLGA 154 (162)
Q Consensus 99 ~~~~~~~~d~vl~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~iivv~n-K~Dl~~~ 154 (162)
...+++.+|++++|+|+++..... .+..++....... ...|+++|+| |+|+.+.
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc
Confidence 233678899999999998622221 1223333332211 1345555555 9999853
No 142
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.77 E-value=1.6e-18 Score=131.68 Aligned_cols=116 Identities=22% Similarity=0.262 Sum_probs=85.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC--Cc-cCCcceeEEEEEEeCC-eEEEEEeCCCCC----CChhhHHhh---cccCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI--SH-ITPTQGFNIKSVQSEG-FKLNVWDIGGQR----KIRPYWRNY---FDNTD 107 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~--~~-~~~~~~~~~~~~~~~~-~~~~l~D~~G~~----~~~~~~~~~---~~~~d 107 (162)
.+|+++|.+|||||||++++.+... .. ..+|...+...+...+ ..+.+||+||.. .+..+...+ +..+|
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 3688999999999999999987652 11 1234444455566665 889999999942 333343444 44599
Q ss_pred EEEEEEECCC---hhhHHHHHHHHHHHhhCCC-CCCCcEEEEEeCCCCCCC
Q psy689 108 ILIYVIDSAD---VKRFEESGFELHELLSDEK-LTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 108 ~vl~v~d~~~---~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~ 154 (162)
++++|+|+++ ++.++....|+.++..... ...+|+++|+||+|+...
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~ 289 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA 289 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC
Confidence 9999999988 7788888888877766543 358999999999999753
No 143
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.77 E-value=5.6e-18 Score=131.32 Aligned_cols=118 Identities=17% Similarity=0.076 Sum_probs=85.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEE---------E--------------EeCCeEEEEEeCC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKS---------V--------------QSEGFKLNVWDIG 90 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~---------~--------------~~~~~~~~l~D~~ 90 (162)
...+.++|+++|++++|||||+++|.+............+... + ......+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 4456899999999999999999999886432211111110000 0 0112689999999
Q ss_pred CCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 91 GQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 91 G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
|+.++.......+..+|++++|+|+++..++.....++..+... ...|+++|+||+|+.+.
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~ 144 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSK 144 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCH
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccch
Confidence 99999999989999999999999999876566666665544332 23589999999999764
No 144
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.76 E-value=5.4e-19 Score=139.02 Aligned_cols=113 Identities=26% Similarity=0.393 Sum_probs=77.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEE----EEEeCCeEEEEEeCCC--------CCCChhhHHhhccc
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIK----SVQSEGFKLNVWDIGG--------QRKIRPYWRNYFDN 105 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~D~~G--------~~~~~~~~~~~~~~ 105 (162)
..+|+++|.+|||||||+|+|.+.......+++|.+.. .+.+.+..+.+||||| +..+......+++.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 46899999999999999999998876555566665533 3444668899999999 55566667788899
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 106 TDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 106 ~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+|++|+|+|.++..+ ....++...+.. .+.|+++|+||+|+.+..
T Consensus 103 ad~il~VvD~~~~~~--~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~ 147 (456)
T 4dcu_A 103 ADVIIFMVNGREGVT--AADEEVAKILYR---TKKPVVLAVNKLDNTEMR 147 (456)
T ss_dssp CSEEEEEEESSSCSC--HHHHHHHHHHTT---CCSCEEEEEECC------
T ss_pred CCEEEEEEeCCCCCC--hHHHHHHHHHHH---cCCCEEEEEECccchhhh
Confidence 999999999876433 444566565554 478999999999997653
No 145
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.76 E-value=1.9e-18 Score=135.91 Aligned_cols=114 Identities=22% Similarity=0.316 Sum_probs=75.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCccCC----cceeEEEEEEeCCeEEEEEeCCCCCCChhhH--------Hhhcc
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDISHITP----TQGFNIKSVQSEGFKLNVWDIGGQRKIRPYW--------RNYFD 104 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--------~~~~~ 104 (162)
..++|+++|++|||||||+|+|.+........ |.......+..++..+.+|||||..++...+ ..+++
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~ 302 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 302 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence 46899999999999999999998865322222 2222334567788999999999986654433 23678
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 105 NTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 105 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
.+|++++|+|++++.+... ..++..+ ...|+++|+||+|+.+....
T Consensus 303 ~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~ 348 (462)
T 3geh_A 303 TADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLI 348 (462)
T ss_dssp SCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGS
T ss_pred cCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhh
Confidence 8999999999998766444 3344443 24699999999999876543
No 146
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.76 E-value=1.1e-17 Score=133.49 Aligned_cols=114 Identities=17% Similarity=0.142 Sum_probs=87.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC------------------CCc-------cCCcceeEEEEEEeCCeEEEEEeCCC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED------------------ISH-------ITPTQGFNIKSVQSEGFKLNVWDIGG 91 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~------------------~~~-------~~~~~~~~~~~~~~~~~~~~l~D~~G 91 (162)
+..+|+++|++|+|||||+++|++.. ... ...+.......+.+.+..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 46799999999999999999996211 000 11123334456777889999999999
Q ss_pred CCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 92 QRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 92 ~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
+.++...+..+++.+|++++|+|+++..+.+....| ..+.. .++|+++|+||+|+.+..
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----RHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----TTCCEEEEEECTTSCCSC
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEeCCCCcccc
Confidence 999999999999999999999999987665554433 33332 378999999999997654
No 147
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.75 E-value=2.6e-18 Score=135.63 Aligned_cols=110 Identities=25% Similarity=0.394 Sum_probs=83.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCccC----CcceeEEEEEEeCCeEEEEEeCCCCC-CCh--------hhHHhhcc
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDISHIT----PTQGFNIKSVQSEGFKLNVWDIGGQR-KIR--------PYWRNYFD 104 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~D~~G~~-~~~--------~~~~~~~~ 104 (162)
.++|+++|++|||||||+|+|.+....... .|.......+..++..+.+|||||+. .+. .....+++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 322 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence 489999999999999999999987632222 23334456677788999999999987 553 23356789
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 105 NTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 105 ~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
.+|++|+|+|++++.+++... .+.. . .+.|+++|+||+|+.+.
T Consensus 323 ~aD~vl~VvD~s~~~s~~~~~-il~~-l-----~~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 323 KADIVLFVLDASSPLDEEDRK-ILER-I-----KNKRYLVVINKVDVVEK 365 (482)
T ss_dssp HCSEEEEEEETTSCCCHHHHH-HHHH-H-----TTSSEEEEEEECSSCCC
T ss_pred cccEEEEEecCCCCCCHHHHH-HHHH-h-----cCCCEEEEEECcccccc
Confidence 999999999999887765532 2222 2 36799999999999754
No 148
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.75 E-value=5.5e-18 Score=133.28 Aligned_cols=117 Identities=17% Similarity=0.241 Sum_probs=83.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeE----EEEEEeCCeEEEEEeCCC----------CCCChhhHH
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFN----IKSVQSEGFKLNVWDIGG----------QRKIRPYWR 100 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~D~~G----------~~~~~~~~~ 100 (162)
....++++++|.+|+|||||++++.+.......+..+.+ ...+...+..+.+||||| ++.+...+.
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 356799999999999999999999987633333333322 235667788999999999 455554443
Q ss_pred -hhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 101 -NYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 101 -~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
.+++.+|++++|+|+++..+ .....++..+.. .+.|+++|+||+|+.+.+.
T Consensus 272 ~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~ 323 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE----AGKAVVIVVNKWDAVDKDE 323 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH----TTCEEEEEEECGGGSCCCS
T ss_pred HHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH----cCCCEEEEEEChhcCCCch
Confidence 47789999999999987543 222334444333 3789999999999987553
No 149
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.75 E-value=2.9e-18 Score=133.39 Aligned_cols=116 Identities=22% Similarity=0.273 Sum_probs=80.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcc----eeEEEEEEeCCe-EEEEEeCCCCCCChhh-------HHhh
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQ----GFNIKSVQSEGF-KLNVWDIGGQRKIRPY-------WRNY 102 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~----~~~~~~~~~~~~-~~~l~D~~G~~~~~~~-------~~~~ 102 (162)
....++|+++|+.|+|||||++++.+......+... ......+...+. .+.+|||||+.++... ...+
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 445799999999999999999999987743323322 233445555554 8999999999877543 3557
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCCC
Q psy689 103 FDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157 (162)
Q Consensus 103 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~~ 157 (162)
++.+|++++|+|++... ....|+..+... ++|+++|+||+|+.+.+..
T Consensus 111 l~~aD~vllVvD~~~~~---~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~ 158 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTP---YEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE 158 (423)
T ss_dssp HTSCSEEEEECSSSCCH---HHHHHHHHHHHT----TCCEEEECCCCTTTTCCCT
T ss_pred HhcCCEEEEEEeCCChH---HHHHHHHHHHhc----CCCEEEEEeCcCCCCccHH
Confidence 88999999999994332 334455555443 7899999999999887653
No 150
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.75 E-value=1.1e-17 Score=125.09 Aligned_cols=112 Identities=18% Similarity=0.245 Sum_probs=80.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCC----cceeEEEEEEeCCeEEEEEeCCCCC-C--------ChhhHHhh
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITP----TQGFNIKSVQSEGFKLNVWDIGGQR-K--------IRPYWRNY 102 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~D~~G~~-~--------~~~~~~~~ 102 (162)
.+..+|+++|++|||||||+|++.+......++ |.......+...+..+.+|||||+. . +......+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 445689999999999999999999887432222 2222334466678899999999987 2 22223456
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 103 FDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 103 ~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
++.+|++++|+|+++ +.....++.+.+.. .+.|+++|+||+|+..
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQ 130 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCC
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCc
Confidence 788999999999976 23333454444432 3789999999999986
No 151
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.74 E-value=5.1e-18 Score=129.30 Aligned_cols=74 Identities=22% Similarity=0.427 Sum_probs=65.2
Q ss_pred CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECC----------ChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCC
Q psy689 80 EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSA----------DVKRFEESGFELHELLSDEKLTGVPLLVYANKQ 149 (162)
Q Consensus 80 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 149 (162)
....+++|||+|++.++..|..++++++++++|||++ +..+|.....|+..+.......++|+++||||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3578999999999999999999999999999999998 788999999999998876555689999999999
Q ss_pred CCCC
Q psy689 150 DLLG 153 (162)
Q Consensus 150 Dl~~ 153 (162)
|+.+
T Consensus 261 DL~~ 264 (354)
T 2xtz_A 261 DIFE 264 (354)
T ss_dssp HHHH
T ss_pred chhh
Confidence 9854
No 152
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.74 E-value=4.4e-17 Score=124.72 Aligned_cols=115 Identities=24% Similarity=0.280 Sum_probs=77.6
Q ss_pred ceE-EEEEcCCCCCHHHHHHHHhcCCC---CccCCcceeEEEEEEeCCeEEEEEeCCCCCC---------ChhhHHhhcc
Q psy689 38 ELR-ILLLGLDNAGKTTILKTLASEDI---SHITPTQGFNIKSVQSEGFKLNVWDIGGQRK---------IRPYWRNYFD 104 (162)
Q Consensus 38 ~~~-v~viG~~~sGKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~~~ 104 (162)
.++ |+++|++|||||||+|+|.+... ....+|.+.....+...+..+.+|||+|... +... ...+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHH-HHGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHH-HHHHH
Confidence 455 99999999999999999998763 1223444455667778888999999999632 2222 23578
Q ss_pred cCCEEEEEEECCChh--hHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 105 NTDILIYVIDSADVK--RFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 105 ~~d~vl~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
.+|++++|+|++++. .......+ ..++......+.|+++|+||+|+...
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~-~~~L~~l~~~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSS-FEILREIGVSGKPILVTLNKIDKING 307 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHH-HHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred hCCEEEEEEECCCCcchHHHHHHHH-HHHHHHhCcCCCCEEEEEECCCCCCc
Confidence 899999999998865 33333333 22222222247899999999999754
No 153
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.74 E-value=6.2e-17 Score=120.32 Aligned_cols=130 Identities=19% Similarity=0.189 Sum_probs=81.4
Q ss_pred hHHHHHHhhcC-CCCCceEEEEEcCCCCCHHHHHHHHhcCCCC-----ccCCcceeE-----------------------
Q psy689 23 GLLAILKKLRS-SPEKELRILLLGLDNAGKTTILKTLASEDIS-----HITPTQGFN----------------------- 73 (162)
Q Consensus 23 ~~~~~~~~~~~-~~~~~~~v~viG~~~sGKStli~~l~~~~~~-----~~~~~~~~~----------------------- 73 (162)
.+...++.... .....++|+++|++|||||||+|+|.+.... ..+..++..
T Consensus 10 ~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~ 89 (299)
T 2aka_B 10 RLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDF 89 (299)
T ss_dssp HHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCH
T ss_pred HHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCH
Confidence 33444444432 2345689999999999999999999988742 111111100
Q ss_pred --------------------------EEEEEe-CCeEEEEEeCCCCCC-------------ChhhHHhhcccCCEEE-EE
Q psy689 74 --------------------------IKSVQS-EGFKLNVWDIGGQRK-------------IRPYWRNYFDNTDILI-YV 112 (162)
Q Consensus 74 --------------------------~~~~~~-~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~vl-~v 112 (162)
...+.. ....+.+|||||... +......+++.++.++ +|
T Consensus 90 ~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v 169 (299)
T 2aka_B 90 EEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAV 169 (299)
T ss_dssp HHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred HHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEE
Confidence 000111 136899999999642 3345567788888776 78
Q ss_pred EECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|+++..+......++..+.. .+.|+++|+||+|+.+...
T Consensus 170 ~d~~~~~~~~~~~~~~~~~~~----~~~~~i~V~NK~Dl~~~~~ 209 (299)
T 2aka_B 170 SPANSDLANSDALKIAKEVDP----QGQRTIGVITKLDLMDEGT 209 (299)
T ss_dssp EESSSCGGGCHHHHHHHHHCT----TCSSEEEEEECGGGSCTTC
T ss_pred ecCCcchhhhHHHHHHHHhCC----CCCeEEEEEEccccCCCCc
Confidence 999865443333233333321 4789999999999986543
No 154
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.74 E-value=2.8e-17 Score=128.71 Aligned_cols=115 Identities=20% Similarity=0.342 Sum_probs=79.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeE----EEEEEeCCeEEEEEeCCCCCCChhh------------H
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFN----IKSVQSEGFKLNVWDIGGQRKIRPY------------W 99 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~D~~G~~~~~~~------------~ 99 (162)
...++++++|++|||||||+|++.+......++..+.+ ...+..++..+.+|||+|..+.... .
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 35689999999999999999999988743333333322 3456778889999999997543221 1
Q ss_pred HhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 100 RNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 100 ~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
..+++.+|++++++|+++..+.... ++...... .+.|+++|+||+|+.+.+
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTG
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCch
Confidence 3467789999999999876554432 22222222 378999999999998654
No 155
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.74 E-value=3.7e-17 Score=120.63 Aligned_cols=114 Identities=19% Similarity=0.263 Sum_probs=71.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCC--cc-------CCcceeEEEEEEe--CC--eEEEEEeCCCCCC-------C
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDIS--HI-------TPTQGFNIKSVQS--EG--FKLNVWDIGGQRK-------I 95 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~--~~-------~~~~~~~~~~~~~--~~--~~~~l~D~~G~~~-------~ 95 (162)
...++|+++|.+|+|||||+|+|++.... .+ .++.+........ ++ .++.+|||||..+ +
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 45789999999999999999998877622 12 4455544444333 33 5899999999733 3
Q ss_pred hhhH-------Hhhccc-------------CCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 96 RPYW-------RNYFDN-------------TDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 96 ~~~~-------~~~~~~-------------~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
.... ..+++. +|+++++++.++.........++..+ .. ++|+++|+||+|+...
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTP 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCH
Confidence 3332 333332 78999999876532222222333333 22 7899999999998743
No 156
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.74 E-value=1.7e-17 Score=131.28 Aligned_cols=118 Identities=19% Similarity=0.129 Sum_probs=81.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCc----------------------------------cCCcceeEEEEEEeC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISH----------------------------------ITPTQGFNIKSVQSE 80 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~----------------------------------~~~~~~~~~~~~~~~ 80 (162)
....++|+++|++++|||||+++|++..... ...+.......+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 3457999999999999999999997552000 011223334456667
Q ss_pred CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHH-----HHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 81 GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEE-----SGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 81 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+..+.+|||||+.+|......++..+|++++|+|+++...+.. ...+...+.... ...|+++|+||+|+.+.
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTT
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccc
Confidence 8899999999999999999999999999999999988643221 111212222211 23579999999999763
No 157
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.73 E-value=3.3e-17 Score=128.31 Aligned_cols=115 Identities=20% Similarity=0.207 Sum_probs=82.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCc----------------------------------cCCcceeEEEEEEeC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISH----------------------------------ITPTQGFNIKSVQSE 80 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~----------------------------------~~~~~~~~~~~~~~~ 80 (162)
....++|+++|++++|||||+++|++..-.. ...|.......+...
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 3457899999999999999999996542000 012333344456677
Q ss_pred CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhh---HH---HHHHHHHHHhhCCCCCCCc-EEEEEeCCCCCC
Q psy689 81 GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKR---FE---ESGFELHELLSDEKLTGVP-LLVYANKQDLLG 153 (162)
Q Consensus 81 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~ 153 (162)
+..+.+|||||+.+|.......+..+|++++|+|+++... |+ .....+..... .++| +++|+||+|+..
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPT 169 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcc
Confidence 8899999999999999888889999999999999987532 11 12222222221 2556 999999999964
No 158
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.73 E-value=2.8e-17 Score=134.94 Aligned_cols=117 Identities=21% Similarity=0.130 Sum_probs=88.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCC--C---C----------------ccCCcceeEEEEEEeCCeEEEEEeCCCC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASED--I---S----------------HITPTQGFNIKSVQSEGFKLNVWDIGGQ 92 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~--~---~----------------~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 92 (162)
...+..+|+++|+.|+|||||+++|+... . . ....|.......+.+.+..+.+|||||+
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~ 87 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGH 87 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCc
Confidence 34567899999999999999999997311 0 0 1123333444566778899999999999
Q ss_pred CCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 93 ~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
.++...+..+++.+|++++|+|+++..+.+....|. .+.. .++|+++|+||+|+...+
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~----~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK----YKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTTCC
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH----cCCCEEEEEECCCcccCC
Confidence 999999999999999999999999877766655443 3333 378999999999998654
No 159
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.73 E-value=1.9e-17 Score=129.56 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=81.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcC--CCCc--------------------------------cCCcceeEEEEEEeCC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASE--DISH--------------------------------ITPTQGFNIKSVQSEG 81 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~--~~~~--------------------------------~~~~~~~~~~~~~~~~ 81 (162)
.+.++|+++|+.++|||||+++|++. .... ...|.......+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 35689999999999999999999764 1110 1123333344566778
Q ss_pred eEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHH-------HHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 82 FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGF-------ELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 82 ~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
..+.+|||||+.+|......+++.+|++++|+|+++ .+|+.... .+...... .-.|+++|+||+|+.+.
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSSS
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCeEEEEEEcccCCCc
Confidence 899999999999999888889999999999999998 56654322 22221111 23469999999999863
No 160
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.73 E-value=5.8e-18 Score=137.19 Aligned_cols=116 Identities=20% Similarity=0.180 Sum_probs=82.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCcc----------------------------------CCcceeEEEEEEeC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHI----------------------------------TPTQGFNIKSVQSE 80 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~----------------------------------~~~~~~~~~~~~~~ 80 (162)
....++|+++|++++|||||+++|++...... ..|.......+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 45579999999999999999999987631110 11223334456667
Q ss_pred CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChh---hH---HHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 81 GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVK---RF---EESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 81 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
+..+.+|||||+.++......+++.+|++|+|+|+++.. .+ ...... ..+.... ...|++||+||+|+.+
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~-l~~~~~l--gi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEH-MLLASSL--GIHNLIIAMNKMDNVD 319 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHH-HHHHHTT--TCCEEEEEEECTTTTT
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHH-HHHHHHc--CCCeEEEEEecccccc
Confidence 889999999999999998888999999999999998642 00 111111 1222221 2346999999999986
No 161
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.73 E-value=5.8e-17 Score=126.73 Aligned_cols=115 Identities=18% Similarity=0.116 Sum_probs=81.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC---Cc----------c-----------------------CCcceeEEEEEEe
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDI---SH----------I-----------------------TPTQGFNIKSVQS 79 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~---~~----------~-----------------------~~~~~~~~~~~~~ 79 (162)
...++|+++|+.++|||||+++|++... .. . .-|.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 3468999999999999999999975531 00 0 0111223344556
Q ss_pred CCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 80 EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 80 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
.+..+.+|||||+.+|......++..+|++++|+|+++.... ....++...... ...|+++|+||+|+.+.
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL---GIKHIVVAINKMDLNGF 172 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCEEEEEEECTTTTTS
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEEcCcCCcc
Confidence 778999999999999988888889999999999999875432 233333332222 12369999999999763
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.73 E-value=4.2e-17 Score=126.46 Aligned_cols=113 Identities=19% Similarity=0.177 Sum_probs=84.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcC--------CCCc------------cCCcceeEEEEEEeCCeEEEEEeCCCCCCC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASE--------DISH------------ITPTQGFNIKSVQSEGFKLNVWDIGGQRKI 95 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~--------~~~~------------~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 95 (162)
...++|+++|++++|||||+++|.+. .+.. ...|.......+...+..+.+|||||+.+|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 45789999999999999999999873 1111 011222334455667789999999999999
Q ss_pred hhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCc-EEEEEeCCCCCC
Q psy689 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVP-LLVYANKQDLLG 153 (162)
Q Consensus 96 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~ 153 (162)
......++..+|++++|+|+++... .....++..+.. .++| +++|+||+|+.+
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccC
Confidence 8888888999999999999987643 334445544433 2667 899999999985
No 163
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.72 E-value=4e-17 Score=122.34 Aligned_cols=129 Identities=19% Similarity=0.302 Sum_probs=78.6
Q ss_pred HHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCC-c----cCCccee--EEE----------------------
Q psy689 25 LAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDIS-H----ITPTQGF--NIK---------------------- 75 (162)
Q Consensus 25 ~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~~~-~----~~~~~~~--~~~---------------------- 75 (162)
..++..+........+|+|+|++|||||||+|+|++.... . .+..++. ...
T Consensus 11 ~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (315)
T 1jwy_B 11 QDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPND 90 (315)
T ss_dssp HHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTC
T ss_pred HHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhccccc
Confidence 3334334333445679999999999999999999987641 1 1111110 000
Q ss_pred ----------------------------------EEEeCCeEEEEEeCCCCCC-------------ChhhHHhhcccCCE
Q psy689 76 ----------------------------------SVQSEGFKLNVWDIGGQRK-------------IRPYWRNYFDNTDI 108 (162)
Q Consensus 76 ----------------------------------~~~~~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~ 108 (162)
........+.+|||||... +......+++.+|+
T Consensus 91 ~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 170 (315)
T 1jwy_B 91 MFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNA 170 (315)
T ss_dssp CBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTE
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCe
Confidence 0111335799999999764 34455678899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 109 LIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 109 vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+++|+|..+..........+...+.. .+.|+++|+||+|+.+...
T Consensus 171 iilvvd~~~~~~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~ 215 (315)
T 1jwy_B 171 IIVAVTPANTDLANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGT 215 (315)
T ss_dssp EEEEEEESSSCSTTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSC
T ss_pred EEEEEEecCcchhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcch
Confidence 99999974322111111112222222 3789999999999986543
No 164
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.72 E-value=8.4e-19 Score=139.76 Aligned_cols=116 Identities=22% Similarity=0.252 Sum_probs=83.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCc-cCCc--ceeEEEEEEe-CCeEEEEEeCCCCCCChhhHHhhcccCCEEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISH-ITPT--QGFNIKSVQS-EGFKLNVWDIGGQRKIRPYWRNYFDNTDILIY 111 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~-~~~~--~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~ 111 (162)
+++.+|+++|++++|||||+++|.+..... ..++ .......+.. .+..+.+|||||+..|...+..+++.+|++++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 467889999999999999999998654211 1111 1111112222 34678999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 112 VIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 112 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
|+|+++....+.. ..+..... .++|+++|+||+|+.+.+.
T Consensus 82 VVDa~dg~~~qt~-e~l~~~~~----~~vPiIVViNKiDl~~~~~ 121 (537)
T 3izy_P 82 VVAADDGVMKQTV-ESIQHAKD----AHVPIVLAINKCDKAEADP 121 (537)
T ss_dssp ECBSSSCCCHHHH-HHHHHHHT----TTCCEEECCBSGGGTTTSC
T ss_pred EEECCCCccHHHH-HHHHHHHH----cCCcEEEEEecccccccch
Confidence 9999885544333 33333332 3789999999999986543
No 165
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.72 E-value=1.1e-16 Score=124.22 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=78.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCc----cCC--cceeEEEEEEe---------------C--------CeEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISH----ITP--TQGFNIKSVQS---------------E--------GFKLN 85 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~----~~~--~~~~~~~~~~~---------------~--------~~~~~ 85 (162)
..+.++|+++|+.++|||||+++|.+..... ..+ |....+..... . ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 3457999999999999999999998654211 112 33322222111 1 16899
Q ss_pred EEeCCCCCCChhhHHhhcccCCEEEEEEECCCh----hhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 86 VWDIGGQRKIRPYWRNYFDNTDILIYVIDSADV----KRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 86 l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|||||+.+|.......+..+|++++|+|+++. .+.+.+.. +... ...|+++|+||+|+.+...
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l---~~~~iivv~NK~Dl~~~~~ 152 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL---GIDKIIIVQNKIDLVDEKQ 152 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT---TCCCEEEEEECTTSSCTTT
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc---CCCeEEEEEEccCCCCHHH
Confidence 999999999888777778889999999999853 33333222 1111 2358999999999987653
No 166
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.71 E-value=9.9e-17 Score=128.03 Aligned_cols=115 Identities=19% Similarity=0.190 Sum_probs=82.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC--CC-------------c------cCCccee----EEEEEEeCCeEEEEEeCC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED--IS-------------H------ITPTQGF----NIKSVQSEGFKLNVWDIG 90 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~--~~-------------~------~~~~~~~----~~~~~~~~~~~~~l~D~~ 90 (162)
.+..+|+++|++|+|||||+++|++.. .. . ...+.|. ....+.+.+..+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 356899999999999999999998632 10 0 0112222 123466778999999999
Q ss_pred CCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 91 GQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 91 G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|+.+|......+++.+|++++|+|+++..... ....+..... .++|+++|+||+|+.+..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~~----~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTRL----RDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHTT----TTCCEEEEEECTTSCCSC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHHH----cCCCEEEEEcCcCCcccc
Confidence 99999988888999999999999998754322 2223333222 478999999999998754
No 167
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.71 E-value=4.3e-17 Score=131.53 Aligned_cols=115 Identities=15% Similarity=0.173 Sum_probs=79.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC--CC------c------cCCcceeEE----EEEEeC-----CeEEEEEeCCCC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED--IS------H------ITPTQGFNI----KSVQSE-----GFKLNVWDIGGQ 92 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~--~~------~------~~~~~~~~~----~~~~~~-----~~~~~l~D~~G~ 92 (162)
.+..+|+++|+.++|||||+++|+... .. . .....|.+. ..+.+. +..+++|||||+
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 346799999999999999999997632 10 0 011223222 233332 378999999999
Q ss_pred CCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 93 ~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
.+|...+..+++.+|++++|+|+++..+.+....|..... .++|+++|+||+|+.+.+
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~ 139 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAAD 139 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCccccc
Confidence 9999999999999999999999998777666666654432 378999999999998754
No 168
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.71 E-value=6.1e-17 Score=130.58 Aligned_cols=115 Identities=16% Similarity=0.182 Sum_probs=81.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC--CC------cc------CCcceeEE----EEEEeC-----CeEEEEEeCCCC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED--IS------HI------TPTQGFNI----KSVQSE-----GFKLNVWDIGGQ 92 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~--~~------~~------~~~~~~~~----~~~~~~-----~~~~~l~D~~G~ 92 (162)
.+..+++++|+.++|||||+++|+... .. .. ....|.+. ..+.+. ...+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 346799999999999999999997521 10 00 01122221 122222 378999999999
Q ss_pred CCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 93 ~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
.+|...+..+++.+|++++|+|+++..+.+....|..... .++|+++|+||+|+.+.+
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~ 141 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD 141 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC
Confidence 9999988899999999999999998877776666654432 378999999999998754
No 169
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.71 E-value=1.9e-17 Score=133.64 Aligned_cols=111 Identities=22% Similarity=0.216 Sum_probs=81.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCc-----cCCcceeEEEEEE----------------eCCeEEEEEeCCCCCC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISH-----ITPTQGFNIKSVQ----------------SEGFKLNVWDIGGQRK 94 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~-----~~~~~~~~~~~~~----------------~~~~~~~l~D~~G~~~ 94 (162)
.+..+|+++|++++|||||+++|.+..... ..++.+....... .....+.+|||||+.+
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 356799999999999999999998754322 2234443333211 1112699999999999
Q ss_pred ChhhHHhhcccCCEEEEEEECCC---hhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 95 IRPYWRNYFDNTDILIYVIDSAD---VKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 95 ~~~~~~~~~~~~d~vl~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
|...+..+++.+|++++|+|+++ +.++.... .+.. .++|+++|+||+|+.+.
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~----~~vPiIVViNKiDl~~~ 137 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM----YRTPFVVAANKIDRIHG 137 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH----TTCCEEEEEECGGGSTT
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH----cCCeEEEEecccccccc
Confidence 99988888999999999999998 55544332 2222 37899999999999764
No 170
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.71 E-value=4.2e-17 Score=126.21 Aligned_cols=112 Identities=18% Similarity=0.082 Sum_probs=80.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC-------CC------------ccCCcceeEEEEEEeCCeEEEEEeCCCCCCChh
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED-------IS------------HITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRP 97 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~-------~~------------~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 97 (162)
+.++|+++|+.++|||||+++|.+.. .. ....|.......+...+..+.+|||||+.+|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999998641 00 001122222334555678999999999999988
Q ss_pred hHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCc-EEEEEeCCCCCC
Q psy689 98 YWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVP-LLVYANKQDLLG 153 (162)
Q Consensus 98 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~ 153 (162)
....++..+|++++|+|+++....+. ..++..+.. .++| +++|+||+|+.+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~----~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ----IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCCEEEEEECGGGCS
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCeEEEEEECcccCC
Confidence 88888999999999999987543332 233333322 2677 789999999975
No 171
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.71 E-value=1.4e-16 Score=130.87 Aligned_cols=116 Identities=24% Similarity=0.223 Sum_probs=87.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcC--CCC-------------------ccCCcceeEEEEEEeCCeEEEEEeCCCCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASE--DIS-------------------HITPTQGFNIKSVQSEGFKLNVWDIGGQR 93 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 93 (162)
..+..+|+++|++|+|||||+++|+.. ... ....|.......+.+.+..+.+|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 456789999999999999999999842 110 01112222334566778999999999999
Q ss_pred CChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 94 ~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
++...+..+++.+|++++|+|+++..+.+....| ..+.. .++|+++|+||+|+...+
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~----~~~p~ilviNK~Dl~~~~ 143 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT----YGVPRIVFVNKMDKLGAN 143 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTCC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH----cCCCEEEEEECCCccccc
Confidence 9999999999999999999999987666555444 33333 278999999999998753
No 172
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.70 E-value=1e-16 Score=124.48 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=79.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCC----ccCC--cceeEEEEEEe---------------C--------CeEE
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDIS----HITP--TQGFNIKSVQS---------------E--------GFKL 84 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~~----~~~~--~~~~~~~~~~~---------------~--------~~~~ 84 (162)
.....++|+++|+.++|||||+++|.+.... ...+ |....+..... . ...+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 4456799999999999999999999865321 1112 33332222221 0 1689
Q ss_pred EEEeCCCCCCChhhHHhhcccCCEEEEEEECCCh----hhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 85 NVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADV----KRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 85 ~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
.+|||||+.+|.......+..+|++++|+|+++. .+.+.+..+ .. . ...|+++|+||+|+.+.
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~-~-----~~~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-QI-I-----GQKNIIIAQNKIELVDK 152 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-HH-H-----TCCCEEEEEECGGGSCH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH-HH-c-----CCCcEEEEEECccCCCH
Confidence 9999999999888777778889999999999853 333332221 11 1 23589999999999764
No 173
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.70 E-value=7.2e-17 Score=126.97 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=81.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC--CCc--------------------------------cCCcceeEEEEEEeCCe
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED--ISH--------------------------------ITPTQGFNIKSVQSEGF 82 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~--~~~--------------------------------~~~~~~~~~~~~~~~~~ 82 (162)
..++|+++|.+++|||||+++|++.. ... ...|.......+...+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 46899999999999999999997641 110 11233333446667788
Q ss_pred EEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChh---hHH---HHHHHHHHHhhCCCCCCCc-EEEEEeCCCCCC
Q psy689 83 KLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVK---RFE---ESGFELHELLSDEKLTGVP-LLVYANKQDLLG 153 (162)
Q Consensus 83 ~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~ 153 (162)
.+.+|||||+.+|......++..+|++++|+|+++.. +|+ ....++..... .++| +++|+||+|+.+
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGT
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEcccccc
Confidence 9999999999999988888999999999999998752 121 22222222222 2455 999999999974
No 174
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.70 E-value=6e-18 Score=133.87 Aligned_cols=114 Identities=21% Similarity=0.233 Sum_probs=80.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCcc-C--CcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHI-T--PTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYV 112 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~-~--~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v 112 (162)
+++.+|+++|+.++|||||+++|........ . .|.......+..++..+.+|||||+.+|...+...+..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 5678999999999999999999986442111 0 111111123344567899999999999999888889999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+|+++....+ ....+..... .++|+++++||+|+.+.
T Consensus 82 Vda~~g~~~q-T~e~l~~~~~----~~vPiIVviNKiDl~~~ 118 (501)
T 1zo1_I 82 VAADDGVMPQ-TIEAIQHAKA----AQVPVVVAVNKIDKPEA 118 (501)
T ss_dssp EETTTBSCTT-THHHHHHHHH----TTCCEEEEEECSSSSTT
T ss_pred eecccCccHH-HHHHHHHHHh----cCceEEEEEEecccccc
Confidence 9998732211 1122222222 37899999999999764
No 175
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.69 E-value=7.4e-17 Score=127.59 Aligned_cols=109 Identities=21% Similarity=0.279 Sum_probs=79.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC----CCc--cC----CcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED----ISH--IT----PTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNT 106 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~----~~~--~~----~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 106 (162)
+.++|+++|+.++|||||+++|.+.. ... .. .|....+..+..++..+.+|||||+.++.......+..+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~a 97 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII 97 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhC
Confidence 47899999999999999999998766 111 11 122222334566788999999999999988888889999
Q ss_pred CEEEEEEECCC---hhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 107 DILIYVIDSAD---VKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 107 d~vl~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
|++++|+|+++ +.+.+.+ ..+.. .++|+++|+||+|+.+
T Consensus 98 D~~ilVvda~~g~~~qt~e~l----~~~~~----~~ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 98 DLALIVVDAKEGPKTQTGEHM----LILDH----FNIPIIVVITKSDNAG 139 (482)
T ss_dssp CEEEEEEETTTCSCHHHHHHH----HHHHH----TTCCBCEEEECTTSSC
T ss_pred CEEEEEEecCCCccHHHHHHH----HHHHH----cCCCEEEEEECCCccc
Confidence 99999999987 3333222 22221 2678899999999975
No 176
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.69 E-value=8.1e-17 Score=123.49 Aligned_cols=101 Identities=14% Similarity=0.171 Sum_probs=79.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChh
Q psy689 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVK 119 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~ 119 (162)
+|+++|++++|||||+++|. ....|.......+...+..+.+|||||+.+|.......++.+|++++|+| +. .
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-G 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-C
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-C
Confidence 89999999999999999998 22344455556677778899999999999998887788899999999999 54 3
Q ss_pred hHHHHHHHHHHHhhCCCCCCCcE-EEEEe-CCCC
Q psy689 120 RFEESGFELHELLSDEKLTGVPL-LVYAN-KQDL 151 (162)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~i-ivv~n-K~Dl 151 (162)
.+.....++..+... ++|. ++++| |+|+
T Consensus 96 ~~~qt~e~~~~~~~~----~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 96 LDAHTGECIIALDLL----GFKHGIIALTRSDST 125 (370)
T ss_dssp CCHHHHHHHHHHHHT----TCCEEEEEECCGGGS
T ss_pred CcHHHHHHHHHHHHc----CCCeEEEEEEeccCC
Confidence 344455555444332 5676 89999 9999
No 177
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.69 E-value=1.8e-17 Score=130.67 Aligned_cols=114 Identities=20% Similarity=0.219 Sum_probs=68.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC--CC--------------------------------ccCCcceeEEEEEEeCC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED--IS--------------------------------HITPTQGFNIKSVQSEG 81 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~--~~--------------------------------~~~~~~~~~~~~~~~~~ 81 (162)
...++|+++|+.++|||||+++|++.. .. ....|.......+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 456899999999999999999986421 10 01122223333456677
Q ss_pred eEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChh---hHH---HHHHHHHHHhhCCCCCCCc-EEEEEeCCCCCC
Q psy689 82 FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVK---RFE---ESGFELHELLSDEKLTGVP-LLVYANKQDLLG 153 (162)
Q Consensus 82 ~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~ 153 (162)
..+.+|||||+.+|.......+..+|++++|+|+++.. +|+ .....+..... .++| ++||+||+|+.+
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEPS 195 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTSTT
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECccCCC
Confidence 89999999999999888888889999999999998752 221 11122222211 3566 999999999965
No 178
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.68 E-value=5.8e-16 Score=127.34 Aligned_cols=116 Identities=17% Similarity=0.082 Sum_probs=85.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC--CC-------------------ccCCcceeEEEEEEeCC-------eEEEE
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED--IS-------------------HITPTQGFNIKSVQSEG-------FKLNV 86 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~--~~-------------------~~~~~~~~~~~~~~~~~-------~~~~l 86 (162)
..+..+|+++|+.|+|||||+++|+... .. ....|.......+.+.+ ..+++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 3557899999999999999999996431 10 01112222233455555 89999
Q ss_pred EeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 87 ~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
|||||+.+|...+..+++.+|++++|+|+++....+....| ..... .++|+++|+||+|+...+
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~ip~ilviNKiD~~~~~ 150 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK----YKVPRIAFVNKMDRMGAN 150 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH----cCCCEEEEEeCCCccccc
Confidence 99999999998889999999999999999986554444333 33332 378999999999998754
No 179
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.68 E-value=9.3e-17 Score=134.25 Aligned_cols=114 Identities=18% Similarity=0.138 Sum_probs=84.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC------------CC-------ccCCcceeEEEEEEeC---------------
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED------------IS-------HITPTQGFNIKSVQSE--------------- 80 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~------------~~-------~~~~~~~~~~~~~~~~--------------- 80 (162)
..+..+|+++|+.++|||||+++|++.. .. ....|.......+.+.
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 3456899999999999999999997641 00 0011222222223332
Q ss_pred -CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 81 -GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 81 -~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
+..+++|||||+.+|...+..+++.+|++++|+|+++..+++....|. .... .++|+++|+||+|+..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG----ERIKPVVVINKVDRAL 164 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCEEEEEEECHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCeEEEEECCCcch
Confidence 578999999999999999999999999999999999887777765443 3333 3789999999999873
No 180
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.68 E-value=1.3e-16 Score=127.94 Aligned_cols=115 Identities=17% Similarity=0.287 Sum_probs=78.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCC--ccC--CcceeEEEEEE---------------------------------
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDIS--HIT--PTQGFNIKSVQ--------------------------------- 78 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~--~~~--~~~~~~~~~~~--------------------------------- 78 (162)
....+|+|+|.+|+|||||+|+|++.... ..+ |+.........
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999988642 111 11111000000
Q ss_pred -----eCC---eEEEEEeCCCCCC-----------ChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCC
Q psy689 79 -----SEG---FKLNVWDIGGQRK-----------IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTG 139 (162)
Q Consensus 79 -----~~~---~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (162)
..+ ..+.+|||||... +......++..+|++++|+|+++.........++..+.. .+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cC
Confidence 000 2589999999765 445666788999999999999875444445555544432 35
Q ss_pred CcEEEEEeCCCCCCC
Q psy689 140 VPLLVYANKQDLLGA 154 (162)
Q Consensus 140 ~~iivv~nK~Dl~~~ 154 (162)
.|+++|+||+|+...
T Consensus 219 ~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 DKIRVVLNKADMVET 233 (550)
T ss_dssp GGEEEEEECGGGSCH
T ss_pred CCEEEEEECCCccCH
Confidence 799999999999754
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.67 E-value=9.6e-17 Score=131.82 Aligned_cols=116 Identities=16% Similarity=0.255 Sum_probs=79.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCccee---EEE--------EEE-------------------------
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGF---NIK--------SVQ------------------------- 78 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~---~~~--------~~~------------------------- 78 (162)
....++|+|+|++|+|||||+|+|++.......+.++. +.. +..
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 34579999999999999999999998763322211111 000 110
Q ss_pred ---------------------eCC----eEEEEEeCCCCCC---ChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHH
Q psy689 79 ---------------------SEG----FKLNVWDIGGQRK---IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHE 130 (162)
Q Consensus 79 ---------------------~~~----~~~~l~D~~G~~~---~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~ 130 (162)
... ..+.+|||||... .......+++.+|++++|+|++++.+......|...
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 000 3589999999554 345566788999999999999887776665444333
Q ss_pred HhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 131 LLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 131 ~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+ .. .+.|+++|+||+|+...
T Consensus 226 l-~~---~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 226 I-KG---RGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp T-TT---SCCCEEEEEECGGGGGG
T ss_pred H-Hh---hCCCEEEEEECcccccc
Confidence 3 22 26789999999999754
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.67 E-value=5.2e-16 Score=118.59 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=50.1
Q ss_pred CeEEEEEeCCCCCCC-------------hhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEe
Q psy689 81 GFKLNVWDIGGQRKI-------------RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYAN 147 (162)
Q Consensus 81 ~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~n 147 (162)
...+.+|||||...+ ......+++.+|++++++|..+.+.... .|+..+... ...+.|+++|+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~--~~~~l~~~~-~~~~~~~i~V~n 211 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS--DAIKISREV-DPSGDRTFGVLT 211 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--HHHHHHHHS-CTTCTTEEEEEE
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--HHHHHHHHh-cccCCCEEEEEe
Confidence 346899999998776 5566788999999999998755333222 222221111 224679999999
Q ss_pred CCCCCCCCC
Q psy689 148 KQDLLGAAP 156 (162)
Q Consensus 148 K~Dl~~~~~ 156 (162)
|+|+.+...
T Consensus 212 K~Dl~~~~~ 220 (360)
T 3t34_A 212 KIDLMDKGT 220 (360)
T ss_dssp CGGGCCTTC
T ss_pred CCccCCCcc
Confidence 999986543
No 183
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=1.5e-16 Score=121.71 Aligned_cols=114 Identities=18% Similarity=0.303 Sum_probs=64.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCc--c--------CCcceeEEEEEEe--CC--eEEEEEeCCCC-------CC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISH--I--------TPTQGFNIKSVQS--EG--FKLNVWDIGGQ-------RK 94 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~--~--------~~~~~~~~~~~~~--~~--~~~~l~D~~G~-------~~ 94 (162)
...++|+++|++|+|||||+++|++..... . .++.+.....+.. .+ ..+.+|||||+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 456899999999999999999987654211 1 1344443333322 23 47899999998 55
Q ss_pred ChhhHH-------hhcccC-------------CEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 95 IRPYWR-------NYFDNT-------------DILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 95 ~~~~~~-------~~~~~~-------------d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+..++. .+++.+ |+++++++.. ..++......+...+. .++|+++|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH
Confidence 655554 455433 4455555542 2344454433222222 47899999999999764
No 184
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.63 E-value=1.1e-15 Score=107.82 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=70.0
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCC-CCccCCcceeEE--EEEEeCCeEEEEEeCCCCCCC----------hhhH
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNI--KSVQSEGFKLNVWDIGGQRKI----------RPYW 99 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~-~~~~~~~~~~~~--~~~~~~~~~~~l~D~~G~~~~----------~~~~ 99 (162)
....+..+++++|++|||||||++++.+.. ...+.++.|.+. ..+...+ .+.+||+||.... ....
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 345678899999999999999999998876 344456655432 2233333 6789999997432 2222
Q ss_pred Hhhc---ccCCEEEEEEECCChhhHHH--HHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 100 RNYF---DNTDILIYVIDSADVKRFEE--SGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 100 ~~~~---~~~d~vl~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
..++ ..++++++++|++++.+... +..|+. . .+.|+++|+||+|+..
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~----~---~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV----D---SNIAVLVLLTKADKLA 151 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH----H---TTCCEEEEEECGGGSC
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH----H---cCCCeEEEEecccCCC
Confidence 3344 46799999999987655432 222221 1 3689999999999865
No 185
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.62 E-value=5.3e-15 Score=121.03 Aligned_cols=113 Identities=16% Similarity=0.147 Sum_probs=84.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCC--------------cc-------CCcceeEEEEEEeCCeEEEEEeCCCCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDIS--------------HI-------TPTQGFNIKSVQSEGFKLNVWDIGGQR 93 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~--------------~~-------~~~~~~~~~~~~~~~~~~~l~D~~G~~ 93 (162)
..+..+++++|+.|+|||||+++|++.... .. ..+.......+...+..+++|||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 356789999999999999999999833210 00 112223444566778999999999999
Q ss_pred CChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 94 ~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
++......+++.+|++++|+|+++....+. ..++..+.. .++|+++|+||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH----ccCCEEEEecCCchh
Confidence 999888899999999999999877544333 344444443 378999999999997
No 186
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.62 E-value=5e-17 Score=131.33 Aligned_cols=113 Identities=21% Similarity=0.252 Sum_probs=60.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC--CC--------------------------------ccCCcceeEEEEEEeCCe
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED--IS--------------------------------HITPTQGFNIKSVQSEGF 82 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~--~~--------------------------------~~~~~~~~~~~~~~~~~~ 82 (162)
..++|+++|++++|||||+++|++.. .. ....|.......+...+.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 45789999999999999999996421 00 000122222334445568
Q ss_pred EEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChh---hH---HHHHHHHHHHhhCCCCCCCc-EEEEEeCCCCCC
Q psy689 83 KLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVK---RF---EESGFELHELLSDEKLTGVP-LLVYANKQDLLG 153 (162)
Q Consensus 83 ~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~ 153 (162)
.+.+|||||+.+|.......+..+|++|+|+|+++.. .+ ......+..... .++| ++||+||+|+.+
T Consensus 256 ~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 256 IYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp ---CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGT
T ss_pred EEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEecccccc
Confidence 8999999999999888888889999999999987532 11 111112222222 2454 999999999975
No 187
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.61 E-value=1.3e-15 Score=129.31 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=79.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC-------CC--------ccCCcceeEE----EEEEeCCeEEEEEeCCCCCCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED-------IS--------HITPTQGFNI----KSVQSEGFKLNVWDIGGQRKI 95 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~-------~~--------~~~~~~~~~~----~~~~~~~~~~~l~D~~G~~~~ 95 (162)
..+.++|+++|+.++|||||+++|.+.. .. ....+.|.+. ..+...+..+.+|||||+.+|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 4457999999999999999999998631 00 0112233332 234556789999999999999
Q ss_pred hhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCc-EEEEEeCCCCCC
Q psy689 96 RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVP-LLVYANKQDLLG 153 (162)
Q Consensus 96 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~Dl~~ 153 (162)
.......+..+|++|+|+|+++.... +...++..+.. .++| ++||+||+|+.+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~----lgIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ----VGVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH----HTCSCEEEEEECCTTCC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH----cCCCeEEEEEeeccccc
Confidence 88888889999999999999875332 23334333322 2667 899999999985
No 188
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.56 E-value=3e-15 Score=115.73 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=47.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-------ccCCcceeEEEEE-----------------EeC---CeEEEEEeCCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDIS-------HITPTQGFNIKSV-----------------QSE---GFKLNVWDIGG 91 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~-------~~~~~~~~~~~~~-----------------~~~---~~~~~l~D~~G 91 (162)
++|+++|.+|||||||+|+|.+.... ...++.+.....+ ..+ ..++.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 48999999999999999999987621 1122333221110 011 26799999999
Q ss_pred CCCC----hhhHH---hhcccCCEEEEEEECCCh
Q psy689 92 QRKI----RPYWR---NYFDNTDILIYVIDSADV 118 (162)
Q Consensus 92 ~~~~----~~~~~---~~~~~~d~vl~v~d~~~~ 118 (162)
.... ..+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 22222 346889999999999764
No 189
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.56 E-value=3.3e-14 Score=108.37 Aligned_cols=117 Identities=19% Similarity=0.172 Sum_probs=69.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCC-cc----CCcceeE-------------------------------------
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDIS-HI----TPTQGFN------------------------------------- 73 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~-~~----~~~~~~~------------------------------------- 73 (162)
....+|+++|++|||||||+|+|.+..+. .. +..++..
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34579999999999999999999987642 11 1111100
Q ss_pred ------------EEEEEe-CCeEEEEEeCCCCCC-------------ChhhHHhhcccCCE-EEEEEECCChhhHHHHHH
Q psy689 74 ------------IKSVQS-EGFKLNVWDIGGQRK-------------IRPYWRNYFDNTDI-LIYVIDSADVKRFEESGF 126 (162)
Q Consensus 74 ------------~~~~~~-~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~-vl~v~d~~~~~~~~~~~~ 126 (162)
...+.. ....+.+|||||... +......+++.++. +++++|.+....-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 001111 246799999999643 23345566666655 455566654222112222
Q ss_pred HHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 127 ELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 127 ~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
++..+. ..+.|+++|+||+|+.+...
T Consensus 189 i~~~~~----~~~~~~i~V~NK~Dl~~~~~ 214 (353)
T 2x2e_A 189 VAKEVD----PQGQRTIGVITKLDLMDEGT 214 (353)
T ss_dssp HHHHHC----TTCTTEEEEEECGGGSCTTC
T ss_pred HHHHhC----cCCCceEEEeccccccCcch
Confidence 333322 24789999999999986543
No 190
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.55 E-value=9.5e-14 Score=111.31 Aligned_cols=116 Identities=17% Similarity=0.204 Sum_probs=86.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC---------------------CCccCCcce----eEEEEEEeCCeEEEEEeCC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED---------------------ISHITPTQG----FNIKSVQSEGFKLNVWDIG 90 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~---------------------~~~~~~~~~----~~~~~~~~~~~~~~l~D~~ 90 (162)
.+.-+|+|+|..++|||||..+|+... +.......| .....+.+++..++|+|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 456799999999999999999986321 000111111 2234577889999999999
Q ss_pred CCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 91 GQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 91 G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
|+.+|.......++-+|++++|+|+.....-+....| ...... ++|.++++||+|..+.+.
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~----~lp~i~fINK~Dr~~ad~ 169 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR----ATPVMTFVNKMDREALHP 169 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT----TCCEEEEEECTTSCCCCH
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh----CCceEEEEecccchhcch
Confidence 9999999999999999999999999876554444444 444443 889999999999987653
No 191
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.2e-13 Score=105.71 Aligned_cols=114 Identities=17% Similarity=0.182 Sum_probs=79.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC---CccCCcceeEEEEEEeCCeEEEEEeCCCCCCCh-------hhHHhhcccCC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDI---SHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR-------PYWRNYFDNTD 107 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d 107 (162)
-.+|+++|.|+||||||+|+|++... .....|.......+...+.++.+.||||..... ......++.+|
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad 151 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCN 151 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCS
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcC
Confidence 36899999999999999999998762 122345556667888899999999999954321 12234568899
Q ss_pred EEEEEEECCChhhHHH-HHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 108 ILIYVIDSADVKRFEE-SGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 108 ~vl~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
++++|+|++++..-.. +...+... .....+.|.+++.||.|..+
T Consensus 152 ~il~vvD~~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 152 LLFIILDVNKPLHHKQIIEKELEGV--GIRLNKTPPDILIKKKEKGG 196 (376)
T ss_dssp EEEEEEETTSHHHHHHHHHHHHHHT--TEEETCCCCCEEEEECSSSC
T ss_pred ccccccccCccHHHHHHHHHHHHHh--hHhhccCChhhhhhHhhhhh
Confidence 9999999998643222 22222221 11234678899999999754
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.51 E-value=2e-13 Score=104.11 Aligned_cols=80 Identities=21% Similarity=0.231 Sum_probs=55.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC--Ccc-CCcceeEEEEEEeCC-----------------eEEEEEeCCCCCCChh
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDI--SHI-TPTQGFNIKSVQSEG-----------------FKLNVWDIGGQRKIRP 97 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~--~~~-~~~~~~~~~~~~~~~-----------------~~~~l~D~~G~~~~~~ 97 (162)
.++|+++|.+|||||||+|+|.+... ..+ .+|.+.+...+...+ ..+.+||+||+..+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 36899999999999999999998652 111 112222222344333 5799999999887532
Q ss_pred -------hHHhhcccCCEEEEEEECCC
Q psy689 98 -------YWRNYFDNTDILIYVIDSAD 117 (162)
Q Consensus 98 -------~~~~~~~~~d~vl~v~d~~~ 117 (162)
....+++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 12345789999999999975
No 193
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.51 E-value=1.4e-13 Score=106.79 Aligned_cols=115 Identities=25% Similarity=0.260 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC--C-ccCCcceeEEEEEEeCC-eEEEEEeCCCCCCC-------hhhHHhhcccCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI--S-HITPTQGFNIKSVQSEG-FKLNVWDIGGQRKI-------RPYWRNYFDNTD 107 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~--~-~~~~~~~~~~~~~~~~~-~~~~l~D~~G~~~~-------~~~~~~~~~~~d 107 (162)
..++++|++|||||||++++.+... . ....+...+...+...+ ..+.+||+||.... .......++.++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 4589999999999999999988741 1 11122333444566654 78999999997432 111223356799
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhCCC-CCCCcEEEEEeCCCCCCC
Q psy689 108 ILIYVIDSADVKRFEESGFELHELLSDEK-LTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 108 ~vl~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~~~ 154 (162)
.++.++|++ ...+..+..+..+...... +...|.++|+||+|+...
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence 999999997 4556666566555443321 235799999999998753
No 194
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.45 E-value=4e-13 Score=104.33 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=62.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCC-cc--------CCcceeEEEEEEeC----CeEEEEEeCCCCCCCh-----
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDIS-HI--------TPTQGFNIKSVQSE----GFKLNVWDIGGQRKIR----- 96 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~-~~--------~~~~~~~~~~~~~~----~~~~~l~D~~G~~~~~----- 96 (162)
..-.++|+++|++|||||||++.|++.... .. .++.+.....+..+ ...+.+||++|.....
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 344688999999999999999999987631 11 12222222222111 2478999999976541
Q ss_pred --hh------------------HHhhcccCC--EEEEEEECCChhhHHHHH-HHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 97 --PY------------------WRNYFDNTD--ILIYVIDSADVKRFEESG-FELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 97 --~~------------------~~~~~~~~d--~vl~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
.. .+.++.+++ +++++.+++. .++.... .|+..+. .+.|+++|+||+|+..
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLT 181 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh-----ccCcEEEEEEcccCcc
Confidence 11 012334444 4555554431 2333433 3554442 3789999999999975
Q ss_pred C
Q psy689 154 A 154 (162)
Q Consensus 154 ~ 154 (162)
.
T Consensus 182 ~ 182 (418)
T 2qag_C 182 P 182 (418)
T ss_dssp H
T ss_pred H
Confidence 3
No 195
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.42 E-value=3.2e-12 Score=105.40 Aligned_cols=115 Identities=21% Similarity=0.191 Sum_probs=80.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC--------CC---------ccCCcceeEE----EEEEe-------CCeEEEEE
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED--------IS---------HITPTQGFNI----KSVQS-------EGFKLNVW 87 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~--------~~---------~~~~~~~~~~----~~~~~-------~~~~~~l~ 87 (162)
++.-+|+|+|+.++|||||..+|+... .. ......|++. ..+.+ +++.++|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 456789999999999999999986321 00 0111122222 23333 25889999
Q ss_pred eCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 88 DIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 88 D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
||||+.+|.......++-+|++++|+|+...-..+.. ..|....+. ++|.++|+||+|....+
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~~----~lp~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANKY----GVPRIVYVNKMDRQGAN 153 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHH----TCCEEEEEECSSSTTCC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHHc----CCCeEEEEccccccCcc
Confidence 9999999999999999999999999998765543333 334444443 78999999999997654
No 196
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.38 E-value=1.8e-13 Score=111.55 Aligned_cols=113 Identities=27% Similarity=0.280 Sum_probs=82.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC--C------------CccCC-------cceeEEEEEEeCCeEEEEEeCCCCCCChh
Q psy689 39 LRILLLGLDNAGKTTILKTLASED--I------------SHITP-------TQGFNIKSVQSEGFKLNVWDIGGQRKIRP 97 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~--~------------~~~~~-------~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 97 (162)
.+|+|+|+.++|||||..+|+... . ..+.+ |+......+.+++..++|+||||+.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 478999999999999999986321 0 00000 11122234667889999999999999999
Q ss_pred hHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 98 YWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 98 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
.....++-+|++++|+|+...-.-+.. ..|..+... ++|.++++||+|..+.+.
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~~----~lp~i~~INKmDr~~a~~ 136 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTR-ILFHALRKM----GIPTIFFINKIDQNGIDL 136 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHH-HHHHHHHHH----TCSCEECCEECCSSSCCS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHHc----CCCeEEEEeccccccCCH
Confidence 999999999999999999765443333 334444433 789999999999987653
No 197
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.35 E-value=2.3e-11 Score=100.35 Aligned_cols=130 Identities=17% Similarity=0.167 Sum_probs=76.7
Q ss_pred hHHHHHHhhcCC-CCCceEEEEEcCCCCCHHHHHHHHhcCCCCccC---Cccee--------------------------
Q psy689 23 GLLAILKKLRSS-PEKELRILLLGLDNAGKTTILKTLASEDISHIT---PTQGF-------------------------- 72 (162)
Q Consensus 23 ~~~~~~~~~~~~-~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~---~~~~~-------------------------- 72 (162)
.+...++.+... .-...+|+|+|.+++||||++|+|.+..+-... .|...
T Consensus 35 kl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~ 114 (772)
T 3zvr_A 35 RLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDF 114 (772)
T ss_dssp HHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCH
T ss_pred HHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCH
Confidence 333344444332 234579999999999999999999987631100 00000
Q ss_pred -------------------------EEEEEEe-CCeEEEEEeCCCCCCC-------------hhhHHhhc-ccCCEEEEE
Q psy689 73 -------------------------NIKSVQS-EGFKLNVWDIGGQRKI-------------RPYWRNYF-DNTDILIYV 112 (162)
Q Consensus 73 -------------------------~~~~~~~-~~~~~~l~D~~G~~~~-------------~~~~~~~~-~~~d~vl~v 112 (162)
....+.. ....+.++||||.... ......++ ..+|++++|
T Consensus 115 ~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~V 194 (772)
T 3zvr_A 115 EEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAV 194 (772)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred HHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 0011111 2245789999996541 12223333 578999999
Q ss_pred EECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCCC
Q psy689 113 IDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156 (162)
Q Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~~ 156 (162)
+|++....-......+..+.. .+.|+++|+||+|+.+...
T Consensus 195 VDAs~~~~~~d~l~ll~~L~~----~g~pvIlVlNKiDlv~~~~ 234 (772)
T 3zvr_A 195 SPANSDLANSDALKIAKEVDP----QGQRTIGVITKLDLMDEGT 234 (772)
T ss_dssp EETTSCSSSCHHHHHHHHHCT----TCSSEEEEEECTTSSCTTC
T ss_pred EcCCCCcchhHHHHHHHHHHh----cCCCEEEEEeCcccCCcch
Confidence 999764322222222333221 3689999999999986543
No 198
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.35 E-value=1.2e-12 Score=97.86 Aligned_cols=114 Identities=17% Similarity=0.224 Sum_probs=60.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcC-CCCcc---------CCcceeEEEEEEe----CCeEEEEEeCCCC-------C
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASE-DISHI---------TPTQGFNIKSVQS----EGFKLNVWDIGGQ-------R 93 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~-~~~~~---------~~~~~~~~~~~~~----~~~~~~l~D~~G~-------~ 93 (162)
..-.++|+++|++|||||||+++|.+. ..... .++.......+.. ....+.+||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 345689999999999999999998875 22111 1222211112222 2368999999998 4
Q ss_pred CChhhHH-------hhccc-------------CCEEEEEEECCChhhHHHHH-HHHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 94 KIRPYWR-------NYFDN-------------TDILIYVIDSADVKRFEESG-FELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 94 ~~~~~~~-------~~~~~-------------~d~vl~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
.+..... .+++. +++++++.+++.. ++.... ..+..+ . ...|+++|+||.|+.
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l~~l-~----~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFMKAI-H----NKVNIVPVIAKADTL 168 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHHHHH-T----TTSCEEEEECCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHHHHH-H----hcCCEEEEEEeCCCC
Confidence 5554443 33322 3456666665431 222322 222222 1 367999999999997
Q ss_pred CC
Q psy689 153 GA 154 (162)
Q Consensus 153 ~~ 154 (162)
..
T Consensus 169 ~~ 170 (301)
T 2qnr_A 169 TL 170 (301)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.35 E-value=6.9e-12 Score=95.94 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=54.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-------CccCCcceeEEEEEE-------------------eCCeEEEEEeCCCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI-------SHITPTQGFNIKSVQ-------------------SEGFKLNVWDIGGQ 92 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~-------~~~~~~~~~~~~~~~-------------------~~~~~~~l~D~~G~ 92 (162)
++++++|.+|||||||+|++.+... ....|+.+.. .+. .....+++||+||.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 5799999999999999999986531 1233444422 111 12357999999997
Q ss_pred CCCh-------hhHHhhcccCCEEEEEEECCC
Q psy689 93 RKIR-------PYWRNYFDNTDILIYVIDSAD 117 (162)
Q Consensus 93 ~~~~-------~~~~~~~~~~d~vl~v~d~~~ 117 (162)
.... .....+++.+|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 6642 223446799999999999875
No 200
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.34 E-value=8.4e-13 Score=100.69 Aligned_cols=116 Identities=15% Similarity=0.192 Sum_probs=71.8
Q ss_pred HHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC------C-----CccCCc------------------ceeEEEE
Q psy689 26 AILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED------I-----SHITPT------------------QGFNIKS 76 (162)
Q Consensus 26 ~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~------~-----~~~~~~------------------~~~~~~~ 76 (162)
..+..+.....+..+|+++|.+|+|||||+++|.... . ....+. .+.....
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~ 146 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRP 146 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEEC
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEE
Confidence 3344444455677899999999999999999985321 0 000000 0000000
Q ss_pred --------------------EEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCC
Q psy689 77 --------------------VQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEK 136 (162)
Q Consensus 77 --------------------~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~ 136 (162)
+...+..+.+|||||.... ....+..+|++++|+|.+..+....+. ..
T Consensus 147 ~~~~~~~~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~ 214 (355)
T 3p32_A 147 SPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK---------KG 214 (355)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC---------TT
T ss_pred CCCCccccchhHHHHHHHHHHhhCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH---------Hh
Confidence 0124578999999995432 234458899999999987654432211 11
Q ss_pred CCCCcEEEEEeCCCCCC
Q psy689 137 LTGVPLLVYANKQDLLG 153 (162)
Q Consensus 137 ~~~~~iivv~nK~Dl~~ 153 (162)
....|+++|+||+|+..
T Consensus 215 ~~~~p~ivVlNK~Dl~~ 231 (355)
T 3p32_A 215 VLELADIVVVNKADGEH 231 (355)
T ss_dssp SGGGCSEEEEECCCGGG
T ss_pred HhhcCCEEEEECCCCcC
Confidence 12469999999999864
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.34 E-value=8.5e-13 Score=100.16 Aligned_cols=118 Identities=18% Similarity=0.209 Sum_probs=70.6
Q ss_pred HHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcC------CCC-----ccCCc------------------ceeEEE
Q psy689 25 LAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASE------DIS-----HITPT------------------QGFNIK 75 (162)
Q Consensus 25 ~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~------~~~-----~~~~~------------------~~~~~~ 75 (162)
...+.++.....+...++++|++|+||||+++.+.+. ... ...+. ......
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~ 122 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIR 122 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceee
Confidence 3445555555677889999999999999999998531 100 00000 000000
Q ss_pred E--------------------EEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCC
Q psy689 76 S--------------------VQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDE 135 (162)
Q Consensus 76 ~--------------------~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~ 135 (162)
. +...+..+.+|||||...... ...+.+|++++|+|++..+.++.+.. ..
T Consensus 123 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~---- 192 (341)
T 2p67_A 123 PVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL---- 192 (341)
T ss_dssp EECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH----
T ss_pred cCccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh----
Confidence 0 013467899999999765443 24588999999999976433211110 00
Q ss_pred CCCCCcEEEEEeCCCCCCC
Q psy689 136 KLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 136 ~~~~~~iivv~nK~Dl~~~ 154 (162)
.+.|.++|+||+|+.+.
T Consensus 193 --~~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 193 --MEVADLIVINKDDGDNH 209 (341)
T ss_dssp --HHHCSEEEECCCCTTCH
T ss_pred --hcccCEEEEECCCCCCh
Confidence 14588999999999753
No 202
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.33 E-value=1.8e-12 Score=99.73 Aligned_cols=88 Identities=24% Similarity=0.186 Sum_probs=52.6
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCC---ccCCcceeEEEEEEeC-----------------CeEEEEEeCCCC
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASEDIS---HITPTQGFNIKSVQSE-----------------GFKLNVWDIGGQ 92 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~~l~D~~G~ 92 (162)
.......+++++|.+|||||||+|+|.+.... ....|...+...+... ...+.+||+||.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl 96 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL 96 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence 34456789999999999999999999987531 1112222333344332 235999999997
Q ss_pred CCChh-------hHHhhcccCCEEEEEEECCChhh
Q psy689 93 RKIRP-------YWRNYFDNTDILIYVIDSADVKR 120 (162)
Q Consensus 93 ~~~~~-------~~~~~~~~~d~vl~v~d~~~~~~ 120 (162)
..... .+..+++.+|++++|+|+++.++
T Consensus 97 ~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 97 VKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp ----------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred ccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 76443 45667899999999999875433
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.29 E-value=1.4e-11 Score=93.82 Aligned_cols=107 Identities=17% Similarity=0.222 Sum_probs=62.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcC------C--CCccCCc---------------------ceeEEE------E---
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASE------D--ISHITPT---------------------QGFNIK------S--- 76 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~------~--~~~~~~~---------------------~~~~~~------~--- 76 (162)
......|+++|++|||||||+|+|.+. . .....|+ ...... .
T Consensus 71 ~~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg 150 (349)
T 2www_A 71 KPLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGG 150 (349)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC--------
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCcccccc
Confidence 345789999999999999999999852 1 0000000 000000 0
Q ss_pred -----------EEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEE
Q psy689 77 -----------VQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVY 145 (162)
Q Consensus 77 -----------~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv 145 (162)
+...+..+.++||+|..... ......+|++++|+|++..+..+.+.. .+ ...|.++|
T Consensus 151 ~tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivV 218 (349)
T 2www_A 151 VTRTTNEAILLCEGAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVA 218 (349)
T ss_dssp -CTTHHHHHHHHHHTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC---------------------CCSCSEEE
T ss_pred chHHHHHHHHhhccCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEE
Confidence 01245678999999964322 234578999999999986543221111 11 24588999
Q ss_pred EeCCCCCC
Q psy689 146 ANKQDLLG 153 (162)
Q Consensus 146 ~nK~Dl~~ 153 (162)
+||+|+.+
T Consensus 219 lNK~Dl~~ 226 (349)
T 2www_A 219 VTKSDGDL 226 (349)
T ss_dssp ECCCSGGG
T ss_pred EeeecCCC
Confidence 99999863
No 204
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.23 E-value=1.8e-11 Score=91.32 Aligned_cols=96 Identities=11% Similarity=-0.014 Sum_probs=74.3
Q ss_pred HHHHHHhcCCC--CccCCcceeEEEEEEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChh-hHHHHHHHHH
Q psy689 53 TILKTLASEDI--SHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVK-RFEESGFELH 129 (162)
Q Consensus 53 tli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~~~~ 129 (162)
+++.++..+.+ ..+.||.|..+......+.++.+||+ ++++..+++.+++.+|++++|||++++. ++..+..|+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~ 109 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLV 109 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHH
Confidence 46666665553 45778888655422212237899999 8999999999999999999999999987 6777888877
Q ss_pred HHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 130 ELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 130 ~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
.+.. .++|+++|+||+|+.+.
T Consensus 110 ~~~~----~~~piilv~NK~DL~~~ 130 (301)
T 1u0l_A 110 LAEK----NELETVMVINKMDLYDE 130 (301)
T ss_dssp HHHH----TTCEEEEEECCGGGCCH
T ss_pred HHHH----CCCCEEEEEeHHHcCCc
Confidence 6544 37899999999999764
No 205
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.15 E-value=3.6e-11 Score=91.08 Aligned_cols=117 Identities=15% Similarity=0.261 Sum_probs=70.9
Q ss_pred HHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhc------CCCC--ccCC---c------------------ceeEEE
Q psy689 25 LAILKKLRSSPEKELRILLLGLDNAGKTTILKTLAS------EDIS--HITP---T------------------QGFNIK 75 (162)
Q Consensus 25 ~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~------~~~~--~~~~---~------------------~~~~~~ 75 (162)
...++++.....+...++++|++|||||||++.+.+ +... ...+ . ......
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 121 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIR 121 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccc
Confidence 456677777778888999999999999999999973 2210 0000 0 000100
Q ss_pred E--------------------EEeCCeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCC
Q psy689 76 S--------------------VQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDE 135 (162)
Q Consensus 76 ~--------------------~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~ 135 (162)
. +...+..+.++||+|...... .....+|.+++++|.+..+..+.+....
T Consensus 122 ~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i------- 191 (337)
T 2qm8_A 122 PSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI------- 191 (337)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH-------
T ss_pred cCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH-------
Confidence 0 112467899999999765432 2346799999999986543211111110
Q ss_pred CCCCCcEEEEEeCCCCCC
Q psy689 136 KLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 136 ~~~~~~iivv~nK~Dl~~ 153 (162)
...+.++++||+|+..
T Consensus 192 --~~~~~ivvlNK~Dl~~ 207 (337)
T 2qm8_A 192 --FELADMIAVNKADDGD 207 (337)
T ss_dssp --HHHCSEEEEECCSTTC
T ss_pred --hccccEEEEEchhccC
Confidence 1235677889999753
No 206
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.13 E-value=5.1e-11 Score=86.69 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=41.8
Q ss_pred eEEEEEeCCCCCCChhhH------HhhcccCCEEEEEEECCCh---hhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 82 FKLNVWDIGGQRKIRPYW------RNYFDNTDILIYVIDSADV---KRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 82 ~~~~l~D~~G~~~~~~~~------~~~~~~~d~vl~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
+.+.+|||||........ ...+.+ +++++++|.... ..+.....+....... .+.|+++|+||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLL 184 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc---cCCCeEEEEeccccc
Confidence 478999999987653321 124456 888999987532 2222221111111111 367999999999997
Q ss_pred CC
Q psy689 153 GA 154 (162)
Q Consensus 153 ~~ 154 (162)
..
T Consensus 185 ~~ 186 (262)
T 1yrb_A 185 SE 186 (262)
T ss_dssp CH
T ss_pred cc
Confidence 54
No 207
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.12 E-value=5e-11 Score=84.56 Aligned_cols=105 Identities=12% Similarity=0.102 Sum_probs=62.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCc-------cCCcc----------eeEEEEEE------------------eCC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASEDISH-------ITPTQ----------GFNIKSVQ------------------SEG 81 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~~~~-------~~~~~----------~~~~~~~~------------------~~~ 81 (162)
+..+++++|.+|||||||+++|....... ..+.. +.....+. ..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 45789999999999999999997642100 00000 11111111 134
Q ss_pred eEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 82 FKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 82 ~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
..+.+|||+|+..... .+....+.+++|+|+++... ....+ ... .+.|+++|+||+|+.+
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~-~~~------~~~~~iiv~NK~Dl~~ 168 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKH-PEI------FRVADLIVINKVALAE 168 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHC-HHH------HHTCSEEEEECGGGHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhh-hhh------hhcCCEEEEecccCCc
Confidence 5688999998521111 11135688999999876432 11111 111 1468999999999864
No 208
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.09 E-value=5.1e-10 Score=86.22 Aligned_cols=84 Identities=21% Similarity=0.330 Sum_probs=57.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCccC----CcceeEEEEEEeCC-----------------eEEEEEeCCCC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASEDISHIT----PTQGFNIKSVQSEG-----------------FKLNVWDIGGQ 92 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~-----------------~~~~l~D~~G~ 92 (162)
...+..+++++|++|||||||+|.|.+....... .+...+...+...+ ..+.+||+||.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 4456789999999999999999999985431111 12222333444443 46899999994
Q ss_pred CC-------ChhhHHhhcccCCEEEEEEECCC
Q psy689 93 RK-------IRPYWRNYFDNTDILIYVIDSAD 117 (162)
Q Consensus 93 ~~-------~~~~~~~~~~~~d~vl~v~d~~~ 117 (162)
.. ........++.+|+++.|+|+.+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33 33344566789999999999863
No 209
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.96 E-value=7.7e-09 Score=80.33 Aligned_cols=111 Identities=16% Similarity=0.280 Sum_probs=59.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCc-----cCCcceeEEEEEEeCC----eEEEEEeCCCCCCCh------------
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDISH-----ITPTQGFNIKSVQSEG----FKLNVWDIGGQRKIR------------ 96 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~~-----~~~~~~~~~~~~~~~~----~~~~l~D~~G~~~~~------------ 96 (162)
.++++|+|++|+|||||++.|++..... ..+........+..+. ..+.++|++|.....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 4559999999999999999998875211 1111111111222222 368899999864321
Q ss_pred --hhHHhhc-------------cc--CCE-EEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 97 --PYWRNYF-------------DN--TDI-LIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 97 --~~~~~~~-------------~~--~d~-vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
..+..++ .+ +|+ ++++.|.+.. +......+...+. .++|+++|.||+|....
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--l~~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--LKSLDLVTMKKLD----SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--CCHHHHHHHHHHh----hCCCEEEEEcchhccch
Confidence 1111111 11 234 4445555432 2222222222222 47899999999998754
No 210
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.94 E-value=1.6e-10 Score=88.55 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=66.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC-----CCCccCCcceeEEE--EEEeCCeEEEEEeCCCCCCChhh--------HHhh
Q psy689 38 ELRILLLGLDNAGKTTILKTLASE-----DISHITPTQGFNIK--SVQSEGFKLNVWDIGGQRKIRPY--------WRNY 102 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~l~D~~G~~~~~~~--------~~~~ 102 (162)
..+++++|.+|+|||||+|+|++. .....++.++.+.. .+... ..+.++||||....... ...+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 240 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKII 240 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence 357999999999999999999876 22223333332222 23222 23789999996543311 1222
Q ss_pred c--ccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 103 F--DNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 103 ~--~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+ +..+.++++++....-.+..... +......+.|+++++||.|....
T Consensus 241 ~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 241 TPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHR 289 (369)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEE
T ss_pred hcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCccccc
Confidence 2 66799999999843211111100 11111246899999999998643
No 211
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.89 E-value=2.9e-08 Score=78.70 Aligned_cols=111 Identities=22% Similarity=0.290 Sum_probs=64.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh------cCCCC-----ccCCc-----------ceeEEEE-----------------
Q psy689 36 EKELRILLLGLDNAGKTTILKTLA------SEDIS-----HITPT-----------QGFNIKS----------------- 76 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~------~~~~~-----~~~~~-----------~~~~~~~----------------- 76 (162)
.++..|+++|.+||||||+++.|. +.... .+.+. .+.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 446689999999999999999998 33310 00110 0111111
Q ss_pred EEeCCeEEEEEeCCCCCCChh-hHH---hh--cccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcE-EEEEeCC
Q psy689 77 VQSEGFKLNVWDIGGQRKIRP-YWR---NY--FDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPL-LVYANKQ 149 (162)
Q Consensus 77 ~~~~~~~~~l~D~~G~~~~~~-~~~---~~--~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-ivv~nK~ 149 (162)
+...+..+.++||||...... ... .. ...+|.+++|+|+............+.. ..|+ .+|+||+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~--------~~~i~gvVlNK~ 250 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKD--------KVDVASVIVTKL 250 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHH--------HHCCCCEEEECT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHh--------hcCceEEEEeCC
Confidence 011457899999999764322 111 11 2268999999998764331121111111 2465 8999999
Q ss_pred CCCCC
Q psy689 150 DLLGA 154 (162)
Q Consensus 150 Dl~~~ 154 (162)
|....
T Consensus 251 D~~~~ 255 (504)
T 2j37_W 251 DGHAK 255 (504)
T ss_dssp TSCCC
T ss_pred ccccc
Confidence 98743
No 212
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.89 E-value=4.2e-09 Score=77.37 Aligned_cols=111 Identities=23% Similarity=0.236 Sum_probs=61.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCc----------cCCcceeEEEEEEeCC----eEEEEEeCCCCCCCh-------
Q psy689 38 ELRILLLGLDNAGKTTILKTLASEDISH----------ITPTQGFNIKSVQSEG----FKLNVWDIGGQRKIR------- 96 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~~~~----------~~~~~~~~~~~~~~~~----~~~~l~D~~G~~~~~------- 96 (162)
.++++++|++|+|||||++.|++..... ...+.......+..+. ..+.++|++|.....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 3789999999999999999998653111 0111111111111222 368899999843211
Q ss_pred hhH-------Hh--------------hcccCCEEEEEEECCC-hhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 97 PYW-------RN--------------YFDNTDILIYVIDSAD-VKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 97 ~~~-------~~--------------~~~~~d~vl~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
... .. .+..+++.++++|... +-.-.. ...+..+ .. ..++++|.||.|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L-~~----~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL-SK----VVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH-HT----TSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH-Hh----cCcEEEEEeccccCCH
Confidence 110 00 1223588999999542 211111 2223333 22 3799999999998754
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.86 E-value=7.5e-10 Score=84.79 Aligned_cols=110 Identities=9% Similarity=0.115 Sum_probs=64.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC------CCccCCcceeEEEE--EEeCCeEEEEEeCCCCCCChhh--------HHh
Q psy689 38 ELRILLLGLDNAGKTTILKTLASED------ISHITPTQGFNIKS--VQSEGFKLNVWDIGGQRKIRPY--------WRN 101 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~------~~~~~~~~~~~~~~--~~~~~~~~~l~D~~G~~~~~~~--------~~~ 101 (162)
..+++++|.+|+|||||+|+|++.. ....++.++.+... +... ..+.++||||....... ...
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~ 238 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-EESSLYDTPGIINHHQMAHYVGKQSLKL 238 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-SSCEEEECCCBCCTTSGGGGSCHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-CCeEEEeCCCcCcHHHHHHHhhHHHHHH
Confidence 3589999999999999999998753 22234444443322 2222 23889999996443311 111
Q ss_pred h--cccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 102 Y--FDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 102 ~--~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
+ ....+.++++++............ +......+.|+++++||.|...
T Consensus 239 ~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 239 ITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEE
T ss_pred hccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCccccc
Confidence 1 256688899998742111111000 1111124689999999999864
No 214
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.83 E-value=1.3e-09 Score=76.79 Aligned_cols=70 Identities=24% Similarity=0.286 Sum_probs=47.7
Q ss_pred CCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHH---HHHhhCCC-CCCCcEEEEEeCC-CCCCCCCCCCc
Q psy689 90 GGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFEL---HELLSDEK-LTGVPLLVYANKQ-DLLGAAPAGYH 160 (162)
Q Consensus 90 ~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~~iivv~nK~-Dl~~~~~~~~~ 160 (162)
+|+..++++|+.||+.+|++|+|+|.+|++.++ +...+ ..++.... +.++|++|++||. |+.+..++.|+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI 184 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYL 184 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHH
Confidence 489999999999999999999999999876554 44444 33444332 3689999999995 78877766554
No 215
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.78 E-value=2.7e-09 Score=78.08 Aligned_cols=56 Identities=23% Similarity=0.349 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEE--EEeCCeEEEEEeCCCCCCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKS--VQSEGFKLNVWDIGGQRKI 95 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~D~~G~~~~ 95 (162)
++++++|.+|+|||||+|+|.+.....+.+++|.+... +. -+..+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~-~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS-LENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE-CTTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE-eCCCEEEEECCCcccC
Confidence 69999999999999999999988765555655544321 22 1346899999996543
No 216
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.77 E-value=5.1e-09 Score=77.42 Aligned_cols=59 Identities=27% Similarity=0.492 Sum_probs=38.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEE--EEeCCeEEEEEeCCCCCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKS--VQSEGFKLNVWDIGGQRK 94 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~D~~G~~~ 94 (162)
....++++++|.+|+|||||+|++.+.....+++.++.+... +.. +..+.+|||||...
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGILW 177 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCcCC
Confidence 456799999999999999999999988755556655544321 222 34689999999654
No 217
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.68 E-value=1.4e-10 Score=82.53 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+..+|+++|++|||||||++++....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998663
No 218
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.56 E-value=9.9e-09 Score=75.63 Aligned_cols=71 Identities=25% Similarity=0.290 Sum_probs=51.3
Q ss_pred CCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHH---HHhhCCC-CCCCcEEEEEeC-CCCCCCCCCCCc
Q psy689 89 IGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELH---ELLSDEK-LTGVPLLVYANK-QDLLGAAPAGYH 160 (162)
Q Consensus 89 ~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~~iivv~nK-~Dl~~~~~~~~~ 160 (162)
.+||...+++|+.|++.+|++|+|+|.+|++.++ ....+. .++.... ..++|++|++|| .|+.+..+..|+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI 269 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYL 269 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHH
Confidence 4689999999999999999999999999887654 333332 3332221 358999999997 589887766554
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.54 E-value=1.7e-07 Score=72.64 Aligned_cols=108 Identities=15% Similarity=0.144 Sum_probs=59.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCc-cCCcce-eEE---EEEEe-CC-eEEEEEeCCCCCCChhhHHh-----hc
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISH-ITPTQG-FNI---KSVQS-EG-FKLNVWDIGGQRKIRPYWRN-----YF 103 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~-~~~~~~-~~~---~~~~~-~~-~~~~l~D~~G~~~~~~~~~~-----~~ 103 (162)
.....++++|++|||||||+|.+.+..... .+-+.+ ... ..+.. .. -.+.+||++|.......... .+
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 455689999999999999999998843111 000000 000 11111 11 25789999985322111111 23
Q ss_pred ccCCEEEEEEECC--ChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCC
Q psy689 104 DNTDILIYVIDSA--DVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152 (162)
Q Consensus 104 ~~~d~vl~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~ 152 (162)
...+.+++ ++.. .+.. ......+.. .+.|+++|.||.|+.
T Consensus 147 ~~~~~~~~-lS~G~~~kqr----v~la~aL~~----~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 147 YEYDFFII-ISATRFKKND----IDIAKAISM----MKKEFYFVRTKVDSD 188 (413)
T ss_dssp GGCSEEEE-EESSCCCHHH----HHHHHHHHH----TTCEEEEEECCHHHH
T ss_pred CccCCeEE-eCCCCccHHH----HHHHHHHHh----cCCCeEEEEecCccc
Confidence 44466665 7876 3221 112222222 267999999999875
No 220
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.51 E-value=1.9e-07 Score=75.40 Aligned_cols=61 Identities=21% Similarity=0.373 Sum_probs=42.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCC-cc-----CCcceeEEEEEE---eCCeEEEEEeCCCCCCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASEDIS-HI-----TPTQGFNIKSVQ---SEGFKLNVWDIGGQRKI 95 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~~~-~~-----~~~~~~~~~~~~---~~~~~~~l~D~~G~~~~ 95 (162)
..+..+|+|+|.+|+|||||+|+|++.... .. ..|.+....... ..+..+.++||||..+.
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 566789999999999999999999987632 11 122232221111 24578999999996543
No 221
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.49 E-value=1.9e-07 Score=69.64 Aligned_cols=59 Identities=20% Similarity=0.021 Sum_probs=49.5
Q ss_pred CCCChhhHHhhcccCCEEEEEEECCChh-hHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 92 QRKIRPYWRNYFDNTDILIYVIDSADVK-RFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 92 ~~~~~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
++++..+.+.+++.+|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNE 125 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCc
Confidence 6777777788999999999999999886 88877788776544 47899999999999754
No 222
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.45 E-value=2e-07 Score=75.64 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy689 40 RILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~ 62 (162)
.++|+|++|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 39999999999999999998764
No 223
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.40 E-value=7.7e-07 Score=69.42 Aligned_cols=109 Identities=24% Similarity=0.261 Sum_probs=62.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcC------CC-----CccCCc-----------ceeEEEE----------E------E
Q psy689 37 KELRILLLGLDNAGKTTILKTLASE------DI-----SHITPT-----------QGFNIKS----------V------Q 78 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~------~~-----~~~~~~-----------~~~~~~~----------~------~ 78 (162)
++..|+++|++||||||+++.|... .. ..+.+. .+..... + .
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 3467999999999999999988652 10 000000 0000000 0 0
Q ss_pred eCCeEEEEEeCCCCCCChhhHH----h--hcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCC-c-EEEEEeCCC
Q psy689 79 SEGFKLNVWDIGGQRKIRPYWR----N--YFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGV-P-LLVYANKQD 150 (162)
Q Consensus 79 ~~~~~~~l~D~~G~~~~~~~~~----~--~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-iivv~nK~D 150 (162)
..+..+.++||||......... . .+..+|.+++|+|+..... ....... .. ... | ..+|+||.|
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~-~~----~~~~~i~gvVlnK~D 249 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKA-FK----EAVGEIGSIIVTKLD 249 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHH-HH----TTSCSCEEEEEECSS
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHH-Hh----hcccCCeEEEEeCCC
Confidence 1456789999999765422111 1 1225799999999865432 2122222 22 134 5 889999999
Q ss_pred CCC
Q psy689 151 LLG 153 (162)
Q Consensus 151 l~~ 153 (162)
...
T Consensus 250 ~~~ 252 (432)
T 2v3c_C 250 GSA 252 (432)
T ss_dssp SCS
T ss_pred Ccc
Confidence 853
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.38 E-value=2.2e-06 Score=66.87 Aligned_cols=110 Identities=19% Similarity=0.193 Sum_probs=62.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc------CCC-----CccCC-----------cceeEEEEE-----------------
Q psy689 37 KELRILLLGLDNAGKTTILKTLAS------EDI-----SHITP-----------TQGFNIKSV----------------- 77 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~------~~~-----~~~~~-----------~~~~~~~~~----------------- 77 (162)
++..|+++|++||||||++..|.. ... ..+.+ ..+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999988863 110 01111 111111110
Q ss_pred EeCCeEEEEEeCCCCCCChhhHH------hhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCC
Q psy689 78 QSEGFKLNVWDIGGQRKIRPYWR------NYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151 (162)
Q Consensus 78 ~~~~~~~~l~D~~G~~~~~~~~~------~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl 151 (162)
...+..+.++||+|........- .....+|.+++|+|++......... ..+... -.+..||+||.|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~----~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA----TPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS----CTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh----CCCeEEEEECCCC
Confidence 01236788999999654332111 1123579999999987543322222 222211 2355789999998
Q ss_pred CC
Q psy689 152 LG 153 (162)
Q Consensus 152 ~~ 153 (162)
..
T Consensus 252 ~~ 253 (443)
T 3dm5_A 252 SA 253 (443)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 225
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.09 E-value=6.7e-06 Score=64.09 Aligned_cols=109 Identities=19% Similarity=0.185 Sum_probs=61.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc------CCC-----CccC-----------CcceeEEEE-----------------E
Q psy689 37 KELRILLLGLDNAGKTTILKTLAS------EDI-----SHIT-----------PTQGFNIKS-----------------V 77 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~------~~~-----~~~~-----------~~~~~~~~~-----------------~ 77 (162)
++..++++|++||||||++..|.. ... ..+. ...+..... .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 467788999999999999988862 110 0000 001111110 0
Q ss_pred EeCCeEEEEEeCCCCCC--Chh----hHHh--hcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCC
Q psy689 78 QSEGFKLNVWDIGGQRK--IRP----YWRN--YFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQ 149 (162)
Q Consensus 78 ~~~~~~~~l~D~~G~~~--~~~----~~~~--~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 149 (162)
...+..+.++||||... ... .... .....+.+++|+|.............+.+. -.+..||+||.
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKl 248 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKM 248 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEecc
Confidence 01246788999999644 211 1111 112458999999987543322222223222 23578899999
Q ss_pred CCC
Q psy689 150 DLL 152 (162)
Q Consensus 150 Dl~ 152 (162)
|..
T Consensus 249 D~~ 251 (433)
T 3kl4_A 249 DGT 251 (433)
T ss_dssp GGC
T ss_pred ccc
Confidence 975
No 226
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.07 E-value=8.9e-06 Score=60.43 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=61.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhc------CC-----CCccCC-----------cceeEEEE-----------------EE
Q psy689 38 ELRILLLGLDNAGKTTILKTLAS------ED-----ISHITP-----------TQGFNIKS-----------------VQ 78 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~------~~-----~~~~~~-----------~~~~~~~~-----------------~~ 78 (162)
...++++|++|+||||++..+.. .. .....+ ..+..... ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 55788899999999999988752 22 010101 00111000 01
Q ss_pred eCCeEEEEEeCCCCCC--Chh-hHH-----hhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCc-EEEEEeCC
Q psy689 79 SEGFKLNVWDIGGQRK--IRP-YWR-----NYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVP-LLVYANKQ 149 (162)
Q Consensus 79 ~~~~~~~l~D~~G~~~--~~~-~~~-----~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~ 149 (162)
..++.+.++||||... ... ... .....+|.+++|+|...... .......+.. ..+ ..+|+||.
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCC
Confidence 1456789999999776 322 111 12446899999999864322 2222222221 245 67899999
Q ss_pred CCCC
Q psy689 150 DLLG 153 (162)
Q Consensus 150 Dl~~ 153 (162)
|...
T Consensus 250 D~~~ 253 (297)
T 1j8m_F 250 DGTA 253 (297)
T ss_dssp GGCT
T ss_pred CCCc
Confidence 9753
No 227
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.98 E-value=4.6e-07 Score=71.35 Aligned_cols=95 Identities=20% Similarity=0.193 Sum_probs=54.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCccCCcceeEEEEEE----eCCeEEEEEeCCCCCC--ChhhH--------Hh
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQ----SEGFKLNVWDIGGQRK--IRPYW--------RN 101 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~D~~G~~~--~~~~~--------~~ 101 (162)
..+.+|+++|.+||||||+.++|.........++.++....+. .......+||..|... ....+ ..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999865421111122111100000 0113345788888632 22222 44
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHH
Q psy689 102 YFDNTDILIYVIDSADVKRFEESGFELHEL 131 (162)
Q Consensus 102 ~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~ 131 (162)
++....+.++|+|.++. +......|...+
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~ 145 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFG 145 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHH
Confidence 56667888999999886 344444444333
No 228
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.83 E-value=4.2e-05 Score=59.85 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=22.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
..+-.-|.|+|++++|||||+|.|++
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhh
Confidence 45567788999999999999999985
No 229
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.83 E-value=7.9e-06 Score=57.87 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=22.3
Q ss_pred HHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 27 ~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
.+.++....++.-.++++||+|||||||++.+.+.
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34455556666778999999999999999998764
No 230
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.81 E-value=2.2e-05 Score=55.03 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=22.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
.++...++|+|++|||||||++.+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 46678999999999999999988754
No 231
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.79 E-value=1.3e-05 Score=59.76 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=34.9
Q ss_pred HHHHHHHhH-HHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 16 QVKDLALGL-LAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 16 ~~~~~~~~~-~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
.+++++... ...++++....++.-.++|+|++|+|||||++.|.+-
T Consensus 103 ~~~~vs~~y~~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 103 NYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHTTCCHHHHHHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEEEEEcChhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 344444333 3467777778888889999999999999999998754
No 232
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.78 E-value=0.00028 Score=55.07 Aligned_cols=109 Identities=18% Similarity=0.199 Sum_probs=60.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh-------cCC-----CCccCC-----------cceeEEEE-----------------
Q psy689 37 KELRILLLGLDNAGKTTILKTLA-------SED-----ISHITP-----------TQGFNIKS----------------- 76 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~-------~~~-----~~~~~~-----------~~~~~~~~----------------- 76 (162)
++..|+++|.+||||||++..|. +.. ...+.+ ..+.....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45678889999999999988875 222 001111 00111000
Q ss_pred EEeCCeEEEEEeCCCCCCChhhHH------hhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCc-EEEEEeCC
Q psy689 77 VQSEGFKLNVWDIGGQRKIRPYWR------NYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVP-LLVYANKQ 149 (162)
Q Consensus 77 ~~~~~~~~~l~D~~G~~~~~~~~~------~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~ 149 (162)
....++.+.++||||......... ..+..++.+++|+|+......-. ....... ..+ .-+|+||.
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~---~~~~f~~-----~l~i~gvVlnK~ 250 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN---TAKAFNE-----ALPLTGVVLTKV 250 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH---HHHHHHH-----HSCCCCEEEECT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH---HHHHHhc-----cCCCeEEEEecC
Confidence 011356789999999755432211 12346789999999865332211 1121111 233 34789999
Q ss_pred CCCC
Q psy689 150 DLLG 153 (162)
Q Consensus 150 Dl~~ 153 (162)
|...
T Consensus 251 D~~~ 254 (433)
T 2xxa_A 251 DGDA 254 (433)
T ss_dssp TSSS
T ss_pred CCCc
Confidence 9753
No 233
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.76 E-value=1.4e-05 Score=54.91 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy689 40 RILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~ 62 (162)
+++++|++|||||||++.+.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999887653
No 234
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.73 E-value=1.3e-05 Score=55.86 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhc
Q psy689 38 ELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~ 60 (162)
.-.++++||+|||||||++.+.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 44689999999999999999875
No 235
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.71 E-value=2.2e-05 Score=53.83 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~ 61 (162)
.-.++++||+|||||||++.|.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999998754
No 236
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.69 E-value=2.6e-05 Score=58.32 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
..++..++|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 56678899999999999999998764
No 237
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.68 E-value=1.8e-05 Score=58.96 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 36 EKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
.+...++|+|++|||||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5567899999999999999998765
No 238
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.66 E-value=3.6e-05 Score=52.87 Aligned_cols=25 Identities=36% Similarity=0.399 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
+.-.++++|++||||||+++.+.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4557899999999999999999765
No 239
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.64 E-value=3e-05 Score=55.74 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=22.9
Q ss_pred HHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 26 AILKKLRSSPEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 26 ~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
..+.+++...++...++|+|+.||||||+++.+.+
T Consensus 13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp ----------CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34666666777788899999999999999998865
No 240
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.64 E-value=2.2e-05 Score=59.94 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=42.5
Q ss_pred CCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCCC
Q psy689 91 GQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAA 155 (162)
Q Consensus 91 G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~~ 155 (162)
..++|...++.+++.++++++|+|++++. ..|...+.+.. .+.|+++|+||+|+....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKS 112 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcc
Confidence 45678888888889999999999999853 23333332221 378999999999997643
No 241
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.64 E-value=3.1e-05 Score=53.73 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
+.-.++++|++||||||+++.+.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3456899999999999999998764
No 242
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.62 E-value=3.2e-05 Score=54.89 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=22.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
..++.-.++|+||+|||||||++.+.+..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34566789999999999999999987643
No 243
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.61 E-value=6.8e-05 Score=50.50 Aligned_cols=36 Identities=28% Similarity=0.235 Sum_probs=27.9
Q ss_pred HHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 27 ~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.+..+....++.-.++++|+.|+|||||++.+.+..
T Consensus 22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344445555667789999999999999999987654
No 244
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.60 E-value=2.8e-05 Score=53.49 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy689 40 RILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~ 61 (162)
.++++||+||||||+++.|.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999998743
No 245
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.60 E-value=9.9e-05 Score=53.30 Aligned_cols=27 Identities=41% Similarity=0.491 Sum_probs=22.7
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
....+..++++|++||||||+.+.|..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455567899999999999999998753
No 246
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.60 E-value=0.00011 Score=53.75 Aligned_cols=35 Identities=31% Similarity=0.364 Sum_probs=27.4
Q ss_pred HHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 25 LAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 25 ~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
...++.+....++. ++++||+|+|||||++.+.+.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHH
Confidence 34455666555555 999999999999999998775
No 247
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.60 E-value=5.2e-05 Score=55.83 Aligned_cols=62 Identities=19% Similarity=0.177 Sum_probs=40.3
Q ss_pred EEeCCCCC-CChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 86 VWDIGGQR-KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 86 l~D~~G~~-~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
+-..||+. .........+..+|+++.|+|++++.+... ..+.+.+ .+.|+++|+||+|+.+.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADA 65 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCH
Confidence 34578875 344556678899999999999998766542 1122222 37899999999999763
No 248
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.58 E-value=3.5e-05 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q psy689 37 KELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~ 59 (162)
+.--++++|++|||||||++.+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 45568999999999999999543
No 249
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.58 E-value=3.8e-05 Score=53.74 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=21.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
..++.-.++++|++|||||||++.+.+-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3444557899999999999999998754
No 250
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.57 E-value=0.0001 Score=54.46 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=22.5
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHh
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~ 59 (162)
....++..|+|.|++|||||||++.+.
T Consensus 26 ~~~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 26 TGNKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp TTCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 345567889999999999999998764
No 251
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.53 E-value=5.1e-05 Score=53.01 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=21.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 36 EKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
.+...++++|++||||||+++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998865
No 252
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.52 E-value=0.00022 Score=52.60 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=22.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
....+..+++.|++||||||+++.|..
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999999853
No 253
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.51 E-value=0.00017 Score=51.82 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=25.7
Q ss_pred HHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 27 ~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.+.+.....++. ++++|++|+||||+++.+.+..
T Consensus 40 ~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 40 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence 344555544444 9999999999999999987653
No 254
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.51 E-value=6.5e-05 Score=53.83 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=25.4
Q ss_pred hcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 31 LRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 31 ~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++...++.-.++++||+|||||||++.+.+-.
T Consensus 24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33444556678999999999999999988764
No 255
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.50 E-value=6e-05 Score=53.63 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=24.5
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 32 RSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 32 ~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+...++.-.++++|++|||||||++.+.+-.
T Consensus 24 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 24 SLSVKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3334455578999999999999999988764
No 256
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.49 E-value=3.1e-05 Score=59.17 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=41.7
Q ss_pred CCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 91 GQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 91 G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
.+++|...+..+++.++++++|+|++++.+ .|...+.+.. .+.|+++|+||+|+...
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPR 113 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCC
Confidence 477888888888899999999999998763 2222222211 37899999999999865
No 257
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.49 E-value=7.7e-05 Score=52.26 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+..-++++||+||||||+++.|....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45578999999999999999997653
No 258
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.48 E-value=8.7e-05 Score=54.04 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=25.7
Q ss_pred HHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 27 ~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
.++++. ..+.-.++++||+||||||+++.+.+.
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 345555 455667999999999999999998764
No 259
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.46 E-value=7.3e-05 Score=51.85 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+...++++|++||||||+++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34578999999999999999987543
No 260
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.46 E-value=7.5e-05 Score=53.74 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=24.9
Q ss_pred hhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 30 KLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 30 ~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+++...++ -.++++|++|||||||++.+.+-.
T Consensus 17 ~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 17 NVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 33434445 578899999999999999998764
No 261
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.45 E-value=8.4e-05 Score=51.61 Aligned_cols=29 Identities=38% Similarity=0.430 Sum_probs=20.9
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 32 RSSPEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 32 ~~~~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
.....+.-.|+++|++||||||+.+.|..
T Consensus 19 ~~~~~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 19 YFQSNAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred eEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 33344456899999999999999998863
No 262
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.45 E-value=7.5e-05 Score=54.81 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=25.8
Q ss_pred hhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 30 KLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 30 ~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+++...++.-.++++||+|||||||++.+.+-.
T Consensus 26 ~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 26 GINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 334444555678999999999999999998764
No 263
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.45 E-value=7.2e-05 Score=52.92 Aligned_cols=28 Identities=36% Similarity=0.367 Sum_probs=23.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.++.-.++++|+.|||||||++.+.+-.
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444568899999999999999998764
No 264
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.44 E-value=8.3e-05 Score=54.31 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=25.2
Q ss_pred hcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 31 LRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 31 ~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++....+.-.++++|++|||||||++.+.+-.
T Consensus 30 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 30 VSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33344555678999999999999999998764
No 265
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.43 E-value=9.2e-05 Score=51.70 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
+.-.++++||+|||||||++.|...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3456889999999999999998754
No 266
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.43 E-value=8.2e-05 Score=53.72 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=24.7
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 32 RSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 32 ~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+...++.-.++++|++|||||||++.+.+-.
T Consensus 29 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 29 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3334455578999999999999999998764
No 267
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.43 E-value=3.6e-05 Score=55.94 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=27.3
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+.+++...++.-.++++|++|||||||++.+.+-.
T Consensus 23 l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444555566678999999999999999998764
No 268
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.43 E-value=0.00012 Score=50.97 Aligned_cols=31 Identities=35% Similarity=0.447 Sum_probs=25.7
Q ss_pred hcCCCCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 31 LRSSPEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 31 ~~~~~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
+-+...+...++++|++||||||+++.|...
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3445666788999999999999999998764
No 269
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.43 E-value=0.00025 Score=51.79 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=25.7
Q ss_pred HHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 27 ~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.+.+.....++. ++++|++|+|||||++.+.+..
T Consensus 64 ~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 64 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence 344555444444 9999999999999999987653
No 270
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.42 E-value=9.6e-05 Score=53.01 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=24.9
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 32 RSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 32 ~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
....++.-.++++|++|||||||++.+.+-.
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344455678999999999999999998764
No 271
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.42 E-value=8e-05 Score=51.53 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy689 41 ILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 41 v~viG~~~sGKStli~~l~~~ 61 (162)
|+|+||+|||||||++.|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998643
No 272
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.42 E-value=0.00011 Score=52.97 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=26.0
Q ss_pred hhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 30 KLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 30 ~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++....++.-.++++|++|||||||++.+.+-.
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 20 DISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334445566679999999999999999998764
No 273
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.41 E-value=9.2e-05 Score=52.84 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=23.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
..++.-.++++|+.|||||||++.+.+-.
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34445578999999999999999998764
No 274
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.41 E-value=7.9e-05 Score=50.29 Aligned_cols=23 Identities=43% Similarity=0.557 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy689 39 LRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~ 61 (162)
..|+++|++||||||+++.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998653
No 275
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.41 E-value=9.3e-05 Score=51.42 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc
Q psy689 37 KELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~ 60 (162)
+...++++|++||||||+++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998854
No 276
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.40 E-value=0.00011 Score=53.60 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=26.0
Q ss_pred hhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 30 KLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 30 ~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+++...++.-.++++|++|||||||++.+.+-.
T Consensus 24 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 24 GVSLQARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344445556678999999999999999998764
No 277
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.40 E-value=0.00016 Score=50.26 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
..+...++++|++||||||+++.+..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999988753
No 278
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.39 E-value=9.7e-05 Score=53.08 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=25.1
Q ss_pred hcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 31 LRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 31 ~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+....++.-.++++|+.|||||||++.+.+-.
T Consensus 25 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33344455678999999999999999998764
No 279
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.39 E-value=0.00011 Score=52.84 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
..++..|+++|++||||||+.+.|..
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999998853
No 280
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.39 E-value=0.0001 Score=53.38 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=26.3
Q ss_pred HhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 29 KKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 29 ~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.++.....+.-.++++|+.|||||||++.+.+-.
T Consensus 17 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 17 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3344444555678999999999999999988764
No 281
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.39 E-value=5.3e-05 Score=53.83 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=18.9
Q ss_pred hhcCCCCCceEEEEEcCCCCCHHHHHHHHh-cC
Q psy689 30 KLRSSPEKELRILLLGLDNAGKTTILKTLA-SE 61 (162)
Q Consensus 30 ~~~~~~~~~~~v~viG~~~sGKStli~~l~-~~ 61 (162)
..+...++.-.++++|++||||||+++.|. +.
T Consensus 19 ~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 19 PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ---CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 333444556678999999999999999998 53
No 282
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.38 E-value=0.00011 Score=51.27 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=21.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
..+...++++|++||||||+++.|..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHH
Confidence 34456789999999999999999864
No 283
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.38 E-value=0.0001 Score=54.19 Aligned_cols=33 Identities=36% Similarity=0.490 Sum_probs=25.6
Q ss_pred hhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 30 KLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 30 ~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++....++.-.++++|+.|||||||++.+.+-.
T Consensus 39 ~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 39 KISWQIAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 333344555678999999999999999998764
No 284
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.37 E-value=0.00012 Score=53.38 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=25.8
Q ss_pred hhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 30 KLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 30 ~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++....++.-.++++|++|||||||++.+.+-.
T Consensus 42 ~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 42 GINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 334444555678999999999999999988764
No 285
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.37 E-value=0.0001 Score=56.05 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASEDI 63 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~~ 63 (162)
-.++++|++|||||||+|.|.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4789999999999999999987653
No 286
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.37 E-value=5e-05 Score=55.02 Aligned_cols=46 Identities=28% Similarity=0.312 Sum_probs=27.4
Q ss_pred HHHHHH-HHhH---HHHHHhhcCCCCC---ceEEEEEcCCCCCHHHHHHHHhc
Q psy689 15 NQVKDL-ALGL---LAILKKLRSSPEK---ELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 15 ~~~~~~-~~~~---~~~~~~~~~~~~~---~~~v~viG~~~sGKStli~~l~~ 60 (162)
..++++ +..+ ...++++.....+ .-.|+++|++||||||+.+.|..
T Consensus 18 l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 18 LETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp --------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 445555 3332 3455566555555 66899999999999999998854
No 287
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.37 E-value=0.00011 Score=53.17 Aligned_cols=30 Identities=33% Similarity=0.329 Sum_probs=24.3
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 32 RSSPEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 32 ~~~~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
+...++.-.++++|++|||||||++.+.+-
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 23 NLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 333445557899999999999999999885
No 288
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.36 E-value=0.00012 Score=52.49 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q psy689 38 ELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~ 59 (162)
+-.++++|++||||||+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999988
No 289
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.36 E-value=0.0001 Score=50.62 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy689 40 RILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~ 60 (162)
.++++|++||||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999875
No 290
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.36 E-value=0.00013 Score=53.15 Aligned_cols=33 Identities=24% Similarity=0.158 Sum_probs=25.7
Q ss_pred hhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 30 KLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 30 ~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++....++.-.++++|++|||||||++.+.+-.
T Consensus 38 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 38 SINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 333444555678999999999999999998764
No 291
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.36 E-value=0.00013 Score=52.99 Aligned_cols=31 Identities=29% Similarity=0.273 Sum_probs=24.8
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 32 RSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 32 ~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
....++.-.++++|+.|||||||++.+.+-.
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344455678999999999999999998764
No 292
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.36 E-value=7.8e-05 Score=52.48 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~ 61 (162)
.-.++++|+.|||||||++.+.+-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 446889999999999999998765
No 293
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.36 E-value=0.00027 Score=53.80 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=25.4
Q ss_pred hcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 31 LRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 31 ~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++...+..-.++++||+|||||||++.+.+-.
T Consensus 23 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 23 ISLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred eEEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 33344555678999999999999999998875
No 294
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.35 E-value=1.5e-05 Score=59.02 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=23.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.++.-.++++|+.|||||||++.+.+-.
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3445578999999999999999988764
No 295
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.35 E-value=0.00017 Score=48.84 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc
Q psy689 37 KELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~ 60 (162)
+.-.++++|++||||||+++.|..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999998753
No 296
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.34 E-value=0.00013 Score=53.35 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=26.3
Q ss_pred HhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 29 KKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 29 ~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.++....++.-.++|+|++|||||||++.+.+-.
T Consensus 36 ~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 36 QGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344445555678999999999999999998764
No 297
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.34 E-value=0.00013 Score=48.95 Aligned_cols=19 Identities=37% Similarity=0.608 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q psy689 40 RILLLGLDNAGKTTILKTL 58 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l 58 (162)
.|++.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999998
No 298
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.34 E-value=9.5e-05 Score=51.26 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy689 40 RILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~ 61 (162)
+++++|++|+||||+++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5789999999999999988764
No 299
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.34 E-value=0.00016 Score=49.51 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=21.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 36 EKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
.++..|++.|++||||||+.+.|..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999988753
No 300
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.34 E-value=0.00012 Score=53.04 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=24.6
Q ss_pred cCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 32 RSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 32 ~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+...++.-.++++|++|||||||++.+.+-.
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 25 NFDLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3334455578999999999999999998764
No 301
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.34 E-value=0.00014 Score=49.21 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy689 39 LRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~ 60 (162)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999876
No 302
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.34 E-value=0.0013 Score=45.29 Aligned_cols=68 Identities=9% Similarity=0.069 Sum_probs=46.0
Q ss_pred CeEEEEEeCCCCCCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCC-CCCCcEEEEEeCCCCC
Q psy689 81 GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEK-LTGVPLLVYANKQDLL 152 (162)
Q Consensus 81 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~Dl~ 152 (162)
.+.+.++|+|+.. .......+..+|.+++++..+... ..+...+..+..... .++.++.+|.|+.|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 4678899999875 344456677799999999987543 444444444433221 3457889999999853
No 303
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.34 E-value=0.00014 Score=50.57 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 36 EKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
.+...++++|++||||||+++.|..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988754
No 304
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.34 E-value=0.00013 Score=51.47 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhc
Q psy689 38 ELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~ 60 (162)
...|+++|++||||||+++.|..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 305
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.33 E-value=0.00015 Score=54.09 Aligned_cols=27 Identities=33% Similarity=0.345 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++.-.++|+|++|||||||++.+.+-.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 344568999999999999999988764
No 306
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.32 E-value=0.00026 Score=54.01 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=25.7
Q ss_pred hhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 30 KLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 30 ~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+++...++.-.++++|++|||||||++.+.+-.
T Consensus 46 ~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 46 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 333444555678999999999999999998764
No 307
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.32 E-value=0.00015 Score=52.94 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=24.9
Q ss_pred hcCCCCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 31 LRSSPEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 31 ~~~~~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
+....++.-.++++|+.|||||||++.+.+-
T Consensus 39 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 39 LSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3334455567899999999999999999886
No 308
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.32 E-value=0.00041 Score=52.00 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHh
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~ 59 (162)
...++-++|+|++||||||+++.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 4567889999999999999998874
No 309
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.32 E-value=0.00013 Score=48.95 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy689 40 RILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~ 60 (162)
.|+++|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998853
No 310
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.31 E-value=0.00014 Score=53.00 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=23.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
..+ .-.++++|++|||||||++.+.+-.
T Consensus 27 ~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 27 EVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 344 5578999999999999999998763
No 311
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.30 E-value=0.00016 Score=52.71 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=25.1
Q ss_pred hcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 31 LRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 31 ~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+....++.-.++++|+.|||||||++.+.+-.
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 26 VSLVINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33344455678999999999999999988764
No 312
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.28 E-value=0.00041 Score=53.07 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=23.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
..+..-.++++||+|||||||++.+.+-.
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 25 EVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34445568899999999999999998774
No 313
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.28 E-value=0.00014 Score=51.81 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=21.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHh
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~ 59 (162)
..++.-.++++||+|||||||++.+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 44556678999999999999999876
No 314
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.28 E-value=0.00021 Score=48.94 Aligned_cols=27 Identities=33% Similarity=0.562 Sum_probs=22.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
..+...|+++|++||||||+.+.|...
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 345668999999999999999988654
No 315
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.27 E-value=0.00042 Score=51.48 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=21.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
..++-.++++|++||||||+++.+.+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 34566789999999999999998864
No 316
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.00017 Score=56.74 Aligned_cols=45 Identities=29% Similarity=0.369 Sum_probs=32.8
Q ss_pred HHHHHHHHHhHHHHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 14 ENQVKDLALGLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
...+++++..+. +++......-.++|+|++|||||||++.+.+-.
T Consensus 118 mi~~~nl~~~y~----~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 118 MKYIYNLHFMLE----KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHHHHHHHHHH----HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred hhhhhhhhehhh----cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 456777776653 333334456689999999999999999987653
No 317
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.25 E-value=0.00017 Score=53.55 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~ 62 (162)
-.++++|++|||||||+|.+.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 468899999999999999998765
No 318
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.25 E-value=0.0002 Score=49.75 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy689 39 LRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~ 60 (162)
..|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 319
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.24 E-value=0.00014 Score=51.20 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=24.2
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
...++.-.++++|++|||||||++.+.+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35556667999999999999999999763
No 320
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.24 E-value=0.00022 Score=48.59 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q psy689 37 KELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~ 59 (162)
+...|+++|++||||||+.+.|.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999886
No 321
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.23 E-value=0.0003 Score=47.87 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
+.-.++++|++|+|||||++.+.+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999988654
No 322
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.23 E-value=0.00018 Score=48.73 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy689 39 LRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~ 60 (162)
..|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999865
No 323
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.22 E-value=5.4e-05 Score=56.43 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.-.++++|++|||||||+|.|.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 4589999999999999999998764
No 324
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.21 E-value=0.00018 Score=49.87 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy689 40 RILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~ 60 (162)
+|+|+|++||||||+++.|..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999865
No 325
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.21 E-value=0.00052 Score=52.23 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=21.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
..++-.++++|++||||||+++.+.+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHh
Confidence 34566799999999999999998864
No 326
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.20 E-value=0.0002 Score=49.72 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhc
Q psy689 38 ELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~ 60 (162)
...|+++|++||||||+++.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998853
No 327
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.20 E-value=0.00029 Score=48.83 Aligned_cols=26 Identities=42% Similarity=0.525 Sum_probs=21.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
...+..|+++|++||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44467899999999999999998753
No 328
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.18 E-value=0.0002 Score=54.51 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=26.4
Q ss_pred hhcCCCCC--ceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 30 KLRSSPEK--ELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 30 ~~~~~~~~--~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.++....+ .-+++|+|++|||||||++.|.+..
T Consensus 160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34455556 6799999999999999999987643
No 329
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.18 E-value=0.00025 Score=48.40 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q psy689 39 LRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~ 59 (162)
..|++.|++||||||+++.|.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999998874
No 330
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.18 E-value=0.00022 Score=49.86 Aligned_cols=20 Identities=40% Similarity=0.615 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy689 40 RILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~ 59 (162)
+|+++|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999884
No 331
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.18 E-value=0.00029 Score=56.87 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=26.7
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+++.....++.-.++++|++|||||||++.+.+-.
T Consensus 359 l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33444444555679999999999999999988764
No 332
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.18 E-value=0.00029 Score=48.98 Aligned_cols=26 Identities=38% Similarity=0.455 Sum_probs=22.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
..++..|++.|.+||||||+.+.|..
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
No 333
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.17 E-value=0.00022 Score=52.93 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~ 62 (162)
-.++++|++|||||||+|.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 468999999999999999998 54
No 334
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.15 E-value=0.00025 Score=49.68 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy689 40 RILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~ 60 (162)
+|+++|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 335
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.15 E-value=0.00029 Score=52.39 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q psy689 37 KELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~ 59 (162)
++-.++++|++||||||+++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 45678999999999999999986
No 336
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.15 E-value=0.00022 Score=54.16 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=25.0
Q ss_pred hcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 31 LRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 31 ~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++...++.-.++++||+|||||||++.+.+-.
T Consensus 34 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 34 VSFQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33334455568899999999999999998764
No 337
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.15 E-value=0.00027 Score=48.29 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy689 40 RILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~ 60 (162)
.|++.|++||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988753
No 338
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.14 E-value=0.0003 Score=48.08 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q psy689 38 ELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~ 59 (162)
+..|++.|++||||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999998875
No 339
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.14 E-value=0.0001 Score=56.15 Aligned_cols=32 Identities=38% Similarity=0.480 Sum_probs=24.9
Q ss_pred hcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 31 LRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 31 ~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+.....+.-.++++|++|||||||++.+.+..
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 33333445689999999999999999998753
No 340
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.13 E-value=0.00023 Score=54.08 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy689 40 RILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~ 61 (162)
.++|+|++||||||+++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999998654
No 341
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.13 E-value=0.00024 Score=54.08 Aligned_cols=32 Identities=31% Similarity=0.257 Sum_probs=25.2
Q ss_pred hcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 31 LRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 31 ~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+....+..-.++++||+|||||||++.+.+-.
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 33344455578999999999999999998764
No 342
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.12 E-value=0.00025 Score=54.38 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=25.2
Q ss_pred hcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 31 LRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 31 ~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++...+..-.++++||+|||||||++.+.+-.
T Consensus 22 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eEEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 33344455578999999999999999998765
No 343
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.12 E-value=0.00032 Score=50.62 Aligned_cols=24 Identities=38% Similarity=0.340 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Q psy689 36 EKELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~ 59 (162)
.+...|+|+|++||||||+++.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 445689999999999999999987
No 344
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.12 E-value=0.0003 Score=48.48 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy689 40 RILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~ 60 (162)
.|++.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998864
No 345
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.12 E-value=0.00025 Score=54.00 Aligned_cols=32 Identities=28% Similarity=0.315 Sum_probs=25.2
Q ss_pred hcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 31 LRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 31 ~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+....+..-.++++||+|||||||++.+.+-.
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 22 INLKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eEEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 33344455578999999999999999998764
No 346
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.12 E-value=0.0003 Score=47.95 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhc
Q psy689 38 ELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~ 60 (162)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999998853
No 347
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.11 E-value=0.00034 Score=53.12 Aligned_cols=33 Identities=33% Similarity=0.447 Sum_probs=26.2
Q ss_pred hhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 30 KLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 30 ~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++....+..-.++++||+|||||||++.+.+-.
T Consensus 23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 444445556678999999999999999998764
No 348
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.11 E-value=0.00035 Score=48.47 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhc
Q psy689 38 ELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~ 60 (162)
+..|++.|++||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 349
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.11 E-value=0.00035 Score=53.49 Aligned_cols=35 Identities=29% Similarity=0.265 Sum_probs=27.6
Q ss_pred HHHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 26 AILKKLRSSPEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 26 ~~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
..++.+....+++-.++++|++|+|||||++.+.+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34445555666677899999999999999999875
No 350
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.11 E-value=0.00047 Score=47.11 Aligned_cols=27 Identities=44% Similarity=0.559 Sum_probs=22.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
...+...++++|.+||||||+++.+..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 334567899999999999999988753
No 351
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.11 E-value=0.00033 Score=49.26 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhc
Q psy689 38 ELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~ 60 (162)
...|+++|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988753
No 352
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.10 E-value=0.00037 Score=48.03 Aligned_cols=26 Identities=27% Similarity=0.251 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
.++..|+|+|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 44678999999999999999998754
No 353
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.10 E-value=0.0003 Score=48.08 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy689 39 LRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~ 61 (162)
..++++|++|||||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46889999999999999998764
No 354
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.09 E-value=0.00028 Score=53.97 Aligned_cols=33 Identities=33% Similarity=0.438 Sum_probs=25.7
Q ss_pred hhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 30 KLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 30 ~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++....+..-.++++||+|||||||++.+.+-.
T Consensus 29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 334444555678999999999999999998764
No 355
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.09 E-value=0.00011 Score=50.09 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy689 40 RILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~ 61 (162)
.++|+|++|||||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998765
No 356
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.09 E-value=0.00029 Score=49.64 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q psy689 37 KELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~ 59 (162)
+...|+++|++||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999885
No 357
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.09 E-value=0.00036 Score=52.44 Aligned_cols=25 Identities=40% Similarity=0.683 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 36 EKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
+++-.++++|++||||||+++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999864
No 358
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.08 E-value=0.00028 Score=53.09 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
..-.++++|++|||||||++.+.+-.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999988764
No 359
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.08 E-value=0.00035 Score=49.64 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=23.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
...+..-+++.|+.||||||+++.+.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 4456678999999999999999998764
No 360
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.08 E-value=0.00041 Score=47.93 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
++..|++.|++||||||+++.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567999999999999999998754
No 361
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.07 E-value=0.0003 Score=47.59 Aligned_cols=21 Identities=33% Similarity=0.686 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy689 40 RILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~ 60 (162)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999988753
No 362
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.07 E-value=0.00039 Score=47.24 Aligned_cols=23 Identities=48% Similarity=0.459 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q psy689 37 KELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~ 59 (162)
+...|+++|++||||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34578999999999999999886
No 363
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.06 E-value=0.0004 Score=47.64 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q psy689 37 KELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~ 59 (162)
+...|+++|++||||||+.+.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999998885
No 364
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.06 E-value=0.00035 Score=49.03 Aligned_cols=21 Identities=43% Similarity=0.512 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy689 40 RILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~ 60 (162)
.|+++|||||||+|...+|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999988854
No 365
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.06 E-value=0.00035 Score=49.39 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q psy689 37 KELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~ 59 (162)
+...|++.|++||||||+++.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999885
No 366
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.05 E-value=0.00051 Score=47.51 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=20.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Q psy689 36 EKELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~ 59 (162)
.+...|++.|++||||||+.+.|.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999998885
No 367
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.04 E-value=0.00042 Score=48.23 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc
Q psy689 37 KELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~ 60 (162)
++..|++.|++||||||+++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998863
No 368
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.03 E-value=0.0011 Score=49.45 Aligned_cols=55 Identities=15% Similarity=0.092 Sum_probs=37.3
Q ss_pred hhhHHhhcccCCEEEEEEECCChhhHHH-HHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 96 RPYWRNYFDNTDILIYVIDSADVKRFEE-SGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 96 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
..+.+..+..+|.+++|+|+.++..-.. +..++... .. .++|.+||+||+|+.++
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~-~~---~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV-EA---NDIQPIICITKMDLIED 132 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH-HT---TTCEEEEEEECGGGCCC
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEECCccCch
Confidence 3344556788999999999986653333 33332222 11 47899999999999875
No 369
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.03 E-value=0.00049 Score=48.26 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc
Q psy689 37 KELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~ 60 (162)
++..|+|.|++||||||+++.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998864
No 370
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.03 E-value=0.00016 Score=57.54 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
...++++|++||||||+++.+++.-
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4459999999999999999987654
No 371
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.02 E-value=0.00026 Score=47.04 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+.-.++++|++|+|||||++.+.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 44578899999999999999987643
No 372
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.02 E-value=0.0004 Score=53.09 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
.+.-.++++|++||||||+++.+.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44557999999999999999998764
No 373
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.01 E-value=0.0012 Score=44.57 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~ 61 (162)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999887654
No 374
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.00 E-value=0.00077 Score=54.40 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~ 62 (162)
-+++++|++|||||||++.+.+-.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 468999999999999999988764
No 375
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.99 E-value=0.00023 Score=54.00 Aligned_cols=32 Identities=31% Similarity=0.345 Sum_probs=25.2
Q ss_pred hcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 31 LRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 31 ~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
+....++.-.++++||+|||||||++.+.+-.
T Consensus 19 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 19 LSLKVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred eEEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 33344455578999999999999999998764
No 376
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.99 E-value=0.00047 Score=54.53 Aligned_cols=27 Identities=33% Similarity=0.554 Sum_probs=22.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
...++-.++|+|++||||||+++.|.+
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHH
Confidence 345567899999999999999998864
No 377
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.99 E-value=0.00034 Score=54.29 Aligned_cols=26 Identities=31% Similarity=0.278 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
.+.-.++|+|++||||||+++.+++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 34446899999999999999998764
No 378
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.99 E-value=0.00037 Score=53.59 Aligned_cols=32 Identities=28% Similarity=0.304 Sum_probs=25.0
Q ss_pred hcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 31 LRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 31 ~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++...+..-.++++||+|||||||++.+.+-.
T Consensus 40 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 40 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred eeEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 33344555678999999999999999998753
No 379
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.98 E-value=0.00032 Score=56.80 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
++.-.++++|++|||||||++.+.+-.
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 334578999999999999999988764
No 380
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.98 E-value=0.00044 Score=48.45 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy689 40 RILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~ 60 (162)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 381
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.98 E-value=0.00041 Score=50.13 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy689 40 RILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~ 60 (162)
.++|+|++||||||+.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998853
No 382
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.98 E-value=0.00073 Score=47.83 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy689 40 RILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~ 60 (162)
-|+++|+|||||+|....|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999988753
No 383
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.97 E-value=0.00064 Score=46.33 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhc
Q psy689 38 ELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~ 60 (162)
...|++.|++||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988853
No 384
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.95 E-value=0.00054 Score=45.84 Aligned_cols=21 Identities=38% Similarity=0.581 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy689 40 RILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~ 60 (162)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 385
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.94 E-value=0.00048 Score=48.39 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhc
Q psy689 38 ELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~ 60 (162)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998853
No 386
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.94 E-value=0.00043 Score=47.04 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy689 40 RILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~ 60 (162)
-.+|+|+.|+||||++..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999998753
No 387
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.93 E-value=0.00064 Score=46.15 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc
Q psy689 37 KELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~ 60 (162)
+...++++|++||||||+++.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998864
No 388
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.93 E-value=0.00056 Score=50.28 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=25.6
Q ss_pred HHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 28 ~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
+.++....++.--++|+|++|+|||||+..+.+.
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3344455566667899999999999999887643
No 389
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.92 E-value=0.00056 Score=46.98 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhc
Q psy689 38 ELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~ 60 (162)
+..|++.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988853
No 390
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.91 E-value=0.0019 Score=47.49 Aligned_cols=24 Identities=42% Similarity=0.493 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~ 61 (162)
.-.+++.|++|+|||++++.+...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 457999999999999999987654
No 391
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.90 E-value=0.0008 Score=54.47 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.-.++++|++|||||||++.+.+-.
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3468899999999999999988764
No 392
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.90 E-value=0.00082 Score=49.31 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Q psy689 36 EKELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~ 59 (162)
.+...|+|.|++||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 446789999999999999999885
No 393
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.89 E-value=0.00073 Score=47.36 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=22.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
..++.--++++|++|+|||||++.+.+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 444556788999999999999998873
No 394
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.89 E-value=0.0006 Score=47.90 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=21.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
..+++-.+++.||+|+||||++.++...
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 3444556999999999999998777543
No 395
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.88 E-value=0.00049 Score=45.29 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
....|++.|++|+|||++++.+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 44569999999999999999886553
No 396
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.88 E-value=0.00042 Score=46.99 Aligned_cols=23 Identities=30% Similarity=0.228 Sum_probs=16.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhc
Q psy689 38 ELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~ 60 (162)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998853
No 397
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.88 E-value=0.00063 Score=48.67 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q psy689 37 KELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~ 59 (162)
.+..+++.|++||||||+.+.+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999886
No 398
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.87 E-value=0.0007 Score=48.70 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=20.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 36 EKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
.+...|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999988743
No 399
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.87 E-value=0.00072 Score=54.54 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~ 62 (162)
-.++++||+|||||||++.+.+-.
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 468899999999999999887663
No 400
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.87 E-value=0.00072 Score=48.93 Aligned_cols=23 Identities=43% Similarity=0.590 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhc
Q psy689 38 ELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~ 60 (162)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999998764
No 401
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.86 E-value=0.0006 Score=46.74 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy689 40 RILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~ 60 (162)
-|++.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998864
No 402
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.86 E-value=0.00064 Score=45.66 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy689 40 RILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~ 60 (162)
.|++.|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988753
No 403
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.85 E-value=0.0009 Score=53.58 Aligned_cols=28 Identities=43% Similarity=0.587 Sum_probs=23.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
..+.-.++++|+.|||||||++.+.+..
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3345568899999999999999998764
No 404
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.85 E-value=0.00079 Score=47.79 Aligned_cols=24 Identities=46% Similarity=0.534 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc
Q psy689 37 KELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~ 60 (162)
....|+++|++||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998853
No 405
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.84 E-value=0.00053 Score=51.47 Aligned_cols=23 Identities=43% Similarity=0.533 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy689 39 LRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~ 61 (162)
-.++++||+|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998764
No 406
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.84 E-value=0.00072 Score=46.16 Aligned_cols=21 Identities=43% Similarity=0.515 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy689 40 RILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~ 60 (162)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998854
No 407
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.84 E-value=0.00078 Score=53.94 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=24.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
...+.-.++++|+.|||||||++.+.+..
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34566789999999999999999998754
No 408
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.84 E-value=0.00074 Score=47.69 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy689 40 RILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~ 60 (162)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 409
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.82 E-value=0.00068 Score=46.12 Aligned_cols=21 Identities=43% Similarity=0.687 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy689 40 RILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~ 60 (162)
.|+++|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988753
No 410
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.82 E-value=0.0014 Score=44.11 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~ 61 (162)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456799999999999999887644
No 411
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.82 E-value=0.0011 Score=51.83 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=29.5
Q ss_pred HHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 27 ~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.+..+ ....+.-+++++|++|+|||||++.+.+..
T Consensus 147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 147 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45666 667778899999999999999999988764
No 412
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.81 E-value=0.00075 Score=45.90 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy689 39 LRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~ 61 (162)
..+.++|++||||||++.++...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 36889999999999999988643
No 413
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.81 E-value=0.00081 Score=50.93 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=28.4
Q ss_pred HHHhhcCCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 27 ~~~~~~~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.+..+ ....+.-+++++|++|+|||||++.+.+..
T Consensus 61 ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 61 AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34455 556667799999999999999999998874
No 414
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.79 E-value=0.00086 Score=44.96 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy689 39 LRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~ 60 (162)
-.|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998753
No 415
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.78 E-value=0.0012 Score=46.99 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
..+...|++.|++||||||+++.|..
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 34667899999999999999988754
No 416
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.78 E-value=0.00026 Score=49.32 Aligned_cols=21 Identities=38% Similarity=0.635 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy689 40 RILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~ 60 (162)
.|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998854
No 417
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.76 E-value=0.0011 Score=46.22 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 36 EKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
.+...|+++|++||||||+++.|..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999988754
No 418
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.75 E-value=0.00052 Score=51.25 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy689 39 LRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~ 61 (162)
-.++|+|+.||||||+++.+.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 35789999999999999999865
No 419
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.74 E-value=0.0015 Score=45.54 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=23.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
..++.-.++++|++|+|||||+..+..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 455666789999999999999999876
No 420
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.73 E-value=0.00078 Score=47.67 Aligned_cols=29 Identities=31% Similarity=0.248 Sum_probs=24.3
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
...++.-.++++|++|+|||||+..+...
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44566678999999999999999998874
No 421
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.73 E-value=0.00096 Score=44.27 Aligned_cols=19 Identities=26% Similarity=0.663 Sum_probs=16.7
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy689 41 ILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 41 v~viG~~~sGKStli~~l~ 59 (162)
.+|+|+.|+||||++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5788999999999998864
No 422
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.69 E-value=0.0011 Score=47.59 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~ 61 (162)
+..++++|++|+||||+++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 345999999999999999998754
No 423
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.68 E-value=0.0012 Score=53.64 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=24.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
...+.-.++++|+.|||||||++.+.+..
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34566789999999999999999998754
No 424
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.001 Score=54.09 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.+.-.++++|++|+|||||++.+.+..
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 445678999999999999999998764
No 425
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.67 E-value=0.00039 Score=61.12 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
++.-+|+++|++|||||||++.|.+-
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 34457999999999999999998765
No 426
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.66 E-value=0.00087 Score=52.92 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=20.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
.++ -.++++|++|||||||++.+.+
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHH
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhc
Confidence 344 5788999999999999998864
No 427
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.66 E-value=0.0013 Score=46.26 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
..-.+++.|++|+|||++++.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999887653
No 428
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.64 E-value=0.003 Score=47.60 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=22.8
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
......-.+++.||+|+|||++++.+...
T Consensus 65 ~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 65 EGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 33344568999999999999999987643
No 429
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.63 E-value=0.0013 Score=48.30 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy689 39 LRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~ 60 (162)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 430
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.62 E-value=0.0028 Score=43.70 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy689 41 ILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 41 v~viG~~~sGKStli~~l~~~ 61 (162)
+++.|++|+|||++++.+...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999887653
No 431
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.59 E-value=0.0015 Score=46.40 Aligned_cols=26 Identities=31% Similarity=0.463 Sum_probs=21.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
..+...|+++|++||||||+.+.|..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999998864
No 432
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.59 E-value=0.0016 Score=45.05 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 36 EKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
.....|+++|..||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4568899999999999999988754
No 433
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.57 E-value=0.0013 Score=45.36 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy689 39 LRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~ 61 (162)
..+++.|++|+|||+++..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999887654
No 434
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.56 E-value=0.0018 Score=47.64 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=21.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
...+.-+++.||+|+|||++++.+...
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344567788899999999999988654
No 435
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.55 E-value=0.0014 Score=52.51 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~ 62 (162)
-.++++|+.|||||||++.+.+-.
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999998764
No 436
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.54 E-value=0.0013 Score=50.04 Aligned_cols=22 Identities=18% Similarity=0.530 Sum_probs=18.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q psy689 37 KELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~ 59 (162)
..+ .+|+|+.||||||+++.+.
T Consensus 23 ~g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEE-EEEECCTTSSHHHHHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHH
Confidence 455 5589999999999999875
No 437
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.53 E-value=0.0015 Score=52.38 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.-.++|+|+.|||||||++.+.+-.
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999998764
No 438
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.53 E-value=0.00095 Score=58.74 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=23.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.++.-+++++|++|||||||++.+.+..
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 3444579999999999999999988763
No 439
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.52 E-value=0.0012 Score=48.10 Aligned_cols=26 Identities=23% Similarity=0.130 Sum_probs=21.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
.++.-.++|+|++|+|||||+..+..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34556789999999999999988764
No 440
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.51 E-value=0.0012 Score=53.35 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~ 62 (162)
-.++++|++|||||||++.+.+-.
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 358899999999999999887653
No 441
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.51 E-value=0.0015 Score=53.01 Aligned_cols=24 Identities=38% Similarity=0.463 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~ 62 (162)
-.++++|+.|||||||++.+.+-.
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998764
No 442
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.50 E-value=0.0025 Score=47.72 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy689 41 ILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 41 v~viG~~~sGKStli~~l~~ 60 (162)
+++.||+|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998766
No 443
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.47 E-value=0.0019 Score=46.90 Aligned_cols=26 Identities=42% Similarity=0.535 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
...-.+++.|++|+|||++++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34456999999999999999998654
No 444
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.46 E-value=0.0038 Score=46.42 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc
Q psy689 37 KELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~ 60 (162)
++-.++++|++|+||||++..+.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 455788999999999999988753
No 445
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.46 E-value=0.0029 Score=47.14 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
....+++.|++|+|||++++.+...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3446899999999999999998654
No 446
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.46 E-value=0.0017 Score=45.32 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy689 40 RILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~ 60 (162)
.+++.|++|+||||+++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988754
No 447
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.45 E-value=0.00088 Score=48.71 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=36.9
Q ss_pred CCCCCCC-hhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCCC
Q psy689 89 IGGQRKI-RPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154 (162)
Q Consensus 89 ~~G~~~~-~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~~ 154 (162)
.||+... .+.....+..+|+++.|+|++++.+..... +. + . ++|.++|+||+|+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADE 61 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCH
Confidence 4665543 345567789999999999999876543211 11 1 1 7799999999999864
No 448
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.44 E-value=0.0023 Score=45.77 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
..+..+++.|++|+|||++++.+...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44566899999999999999988653
No 449
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.44 E-value=0.0025 Score=49.33 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
.+.-|+++|++||||||+.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3566889999999999999998653
No 450
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.42 E-value=0.002 Score=44.41 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy689 40 RILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~ 60 (162)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988854
No 451
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.41 E-value=0.002 Score=47.62 Aligned_cols=23 Identities=48% Similarity=0.585 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q psy689 37 KELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~ 59 (162)
++-.++++|++||||||++..|.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45578999999999999998875
No 452
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.40 E-value=0.00089 Score=50.43 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
..-.+++.|++|+||||+++.+...
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999988754
No 453
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.40 E-value=0.0055 Score=44.31 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=22.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
......+++.|++|+|||++++.+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 455678999999999999999988664
No 454
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.39 E-value=0.0045 Score=48.82 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy689 40 RILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~ 61 (162)
-++++||+|+|||++++.+.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 455
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.39 E-value=0.0025 Score=50.59 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy689 40 RILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~ 62 (162)
-++++||+|+|||+|++.+.+..
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 39999999999999999987653
No 456
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.39 E-value=0.0021 Score=47.07 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
..-.+++.||+|+|||++++.+...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3567899999999999999998764
No 457
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.38 E-value=0.0027 Score=46.68 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=20.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 36 EKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
.....+++.|++|+|||++++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999976543
No 458
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.002 Score=52.30 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy689 41 ILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 41 v~viG~~~sGKStli~~l~~~~ 62 (162)
++++|+.|||||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7899999999999999998765
No 459
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.37 E-value=0.002 Score=45.61 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=21.3
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHh
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~ 59 (162)
...++.--++++|++|+|||||+..+.
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 344555678999999999999977664
No 460
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.36 E-value=0.00067 Score=44.55 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~ 61 (162)
...|++.|++|+|||++++.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 346999999999999999887654
No 461
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.35 E-value=0.002 Score=51.69 Aligned_cols=28 Identities=29% Similarity=0.578 Sum_probs=23.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
...+...++++|++||||||+++.|.+.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHh
Confidence 3455678999999999999999988654
No 462
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.35 E-value=0.039 Score=38.35 Aligned_cols=67 Identities=9% Similarity=0.020 Sum_probs=45.0
Q ss_pred CeEEEEEeCCCC-CCChhhHHhhcccCCEEEEEEECCChhhHHHHHHHHHHHhhCCCCCCCcEEEEEeCCCCCC
Q psy689 81 GFKLNVWDIGGQ-RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153 (162)
Q Consensus 81 ~~~~~l~D~~G~-~~~~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~Dl~~ 153 (162)
.+.+.++|+|+. ... .....+..+|.+++++..+. .+...+...+..+.... +.++.+|.|+.|...
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 467889999987 433 23456678999999999764 34445544444443322 456899999998654
No 463
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.34 E-value=0.0025 Score=47.03 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
...-.+++.||+|+|||++++.+...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 44557899999999999999998764
No 464
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.34 E-value=0.0013 Score=48.56 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=16.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q psy689 37 KELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~ 59 (162)
+...|+|.|++||||||+.+.|.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~ 26 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFD 26 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 35579999999999999998874
No 465
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.33 E-value=0.0065 Score=45.90 Aligned_cols=25 Identities=40% Similarity=0.515 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 37 KELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
....+++.||+|+|||++++.+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999988654
No 466
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.32 E-value=0.0024 Score=44.62 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
...++++|++|+||||+...|....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3568999999999999999987553
No 467
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.32 E-value=0.0052 Score=45.72 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=22.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
.......+++.||+|+|||++++.+...
T Consensus 47 ~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 47 NRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp TCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3344567999999999999999998654
No 468
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.32 E-value=0.007 Score=45.91 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=20.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 36 EKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
....+++++|++|+||||+.+.|..
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3456799999999999999987643
No 469
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.30 E-value=0.006 Score=45.52 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
.+.-.+++.||+|+|||++++.+...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHHH
Confidence 34467999999999999999998765
No 470
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.29 E-value=0.001 Score=50.11 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 36 EKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
...-.+++.|++|+||||+++.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 33457899999999999999988754
No 471
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.27 E-value=0.0024 Score=48.20 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy689 39 LRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~ 61 (162)
..|+|.|++||||||+...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46899999999999999887643
No 472
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.26 E-value=0.0028 Score=47.51 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q psy689 39 LRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~ 60 (162)
..|+|+|++||||||+...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988864
No 473
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.26 E-value=0.0024 Score=50.90 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=24.9
Q ss_pred HHhhcC-CCCCceEEEEEcCCCCCHHHHHHHH
Q psy689 28 LKKLRS-SPEKELRILLLGLDNAGKTTILKTL 58 (162)
Q Consensus 28 ~~~~~~-~~~~~~~v~viG~~~sGKStli~~l 58 (162)
+.++.. ..++.-.++++|++|||||||++.+
T Consensus 28 Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 28 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 445555 5566778999999999999999984
No 474
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.0052 Score=47.79 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=22.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
.+.+--+++.||||+|||++++.+.+.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344557899999999999999998765
No 475
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.26 E-value=0.0042 Score=54.57 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 39 LRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~~ 62 (162)
-+++++|++|||||||++.+.+-.
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999987763
No 476
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.25 E-value=0.0071 Score=47.29 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=22.2
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhc
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~ 60 (162)
....++-.+++.||+|+|||++++.+..
T Consensus 58 ~~~~~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 58 SKKMAGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp TTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence 3444456799999999999999988753
No 477
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.24 E-value=0.0036 Score=47.17 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy689 39 LRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~ 61 (162)
..|+|+||+|||||||...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998654
No 478
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.23 E-value=0.0028 Score=44.17 Aligned_cols=20 Identities=25% Similarity=0.591 Sum_probs=16.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy689 40 RILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~ 59 (162)
-.+|+|+.|+||||++..+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 35678999999999998863
No 479
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.22 E-value=0.0076 Score=45.46 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy689 39 LRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~ 61 (162)
-.+++.|++|+|||++++.+...
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988653
No 480
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.21 E-value=0.0046 Score=45.92 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~ 61 (162)
.-.+++.|++|+||||+++.+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 446899999999999999988754
No 481
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.21 E-value=0.0032 Score=43.22 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy689 41 ILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 41 v~viG~~~sGKStli~~l~~~ 61 (162)
++|+|.++||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999998754
No 482
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.20 E-value=0.0036 Score=46.75 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q psy689 39 LRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 39 ~~v~viG~~~sGKStli~~l~~~ 61 (162)
.-|+|+||+|||||||...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35789999999999999998654
No 483
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.20 E-value=0.0033 Score=44.81 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc
Q psy689 37 KELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 37 ~~~~v~viG~~~sGKStli~~l~~ 60 (162)
...+++++|++||||||+...|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 356899999999999999988753
No 484
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.19 E-value=0.0042 Score=46.30 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~ 61 (162)
+.-++|+||+|||||||...+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 345789999999999999988643
No 485
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.16 E-value=0.0083 Score=44.83 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=20.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Q psy689 36 EKELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 36 ~~~~~v~viG~~~sGKStli~~l~ 59 (162)
.++-.++++|++|+||||++..|.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 445678899999999999988774
No 486
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.16 E-value=0.0029 Score=53.97 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy689 40 RILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~~ 62 (162)
.++++|+.|||||||++.+.++.
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998654
No 487
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.15 E-value=0.0028 Score=47.92 Aligned_cols=30 Identities=27% Similarity=0.210 Sum_probs=24.7
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 33 SSPEKELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 33 ~~~~~~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
...++.-.+.|+|++|+|||||+..+....
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 455566778999999999999999987653
No 488
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.0078 Score=46.44 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=22.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
.+++--+++.||||+|||++++.+.+.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 444557899999999999999998765
No 489
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.14 E-value=0.006 Score=45.50 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy689 41 ILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 41 v~viG~~~sGKStli~~l~~~ 61 (162)
+++.|++|+||||+++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999887654
No 490
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.11 E-value=0.0032 Score=47.57 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy689 40 RILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~ 61 (162)
.++|.|++|+||||+++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999988754
No 491
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.10 E-value=0.0034 Score=45.91 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~ 61 (162)
+..+++.|++|+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988643
No 492
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.09 E-value=0.0035 Score=45.17 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
...+++.|++|+|||++++.+....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3578999999999999999987553
No 493
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.09 E-value=0.0034 Score=43.84 Aligned_cols=23 Identities=48% Similarity=0.551 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhc
Q psy689 38 ELRILLLGLDNAGKTTILKTLAS 60 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~ 60 (162)
+..|+++|++||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999988754
No 494
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.09 E-value=0.0029 Score=47.40 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy689 41 ILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 41 v~viG~~~sGKStli~~l~~~ 61 (162)
+++.||+|+||||+++.+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988654
No 495
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.09 E-value=0.018 Score=45.09 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=20.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHh
Q psy689 35 PEKELRILLLGLDNAGKTTILKTLA 59 (162)
Q Consensus 35 ~~~~~~v~viG~~~sGKStli~~l~ 59 (162)
..+-.-|.|+|+.++|||+|+|.++
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHH
Confidence 3445667799999999999999654
No 496
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.012 Score=45.81 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=23.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
...++--+++.||||+|||++++.+.+.
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3455667899999999999999998765
No 497
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.03 E-value=0.0018 Score=55.18 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASED 62 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~~ 62 (162)
.-.++|+|+.|||||||++.+.+..
T Consensus 699 GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 699 SSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp TCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998764
No 498
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.03 E-value=0.0041 Score=44.77 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy689 40 RILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 40 ~v~viG~~~sGKStli~~l~~~ 61 (162)
.+++.|++|+|||++++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3889999999999999988653
No 499
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.99 E-value=0.005 Score=43.77 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 38 ELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 38 ~~~v~viG~~~sGKStli~~l~~~ 61 (162)
+..|++.|..||||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 456899999999999999988643
No 500
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.0049 Score=48.01 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=23.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhcC
Q psy689 34 SPEKELRILLLGLDNAGKTTILKTLASE 61 (162)
Q Consensus 34 ~~~~~~~v~viG~~~sGKStli~~l~~~ 61 (162)
..+.+--|++.||||+|||++++.+.+.
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3455668999999999999999998765
Done!