RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy689
(162 letters)
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 229 bits (585), Expect = 4e-78
Identities = 111/135 (82%), Positives = 128/135 (94%)
Query: 23 GLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGF 82
GLL+IL+KL+S+P++E+RILLLGLDNAGKTT+LK LASEDISHITPTQGFNIKSVQS+GF
Sbjct: 1 GLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGF 60
Query: 83 KLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPL 142
KLNVWDIGGQRKIRPYWR+YF+NTDILIYVIDSAD KRFEE+G EL ELL +EKL+ VP+
Sbjct: 61 KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 120
Query: 143 LVYANKQDLLGAAPA 157
L++ANKQDLL AAPA
Sbjct: 121 LIFANKQDLLTAAPA 135
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 217 bits (556), Expect = 1e-73
Identities = 79/135 (58%), Positives = 104/135 (77%), Gaps = 1/135 (0%)
Query: 23 GLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGF 82
GLL ILKK++ E+ELR+L+LGLDNAGKTTILK ED+ I+PT GFNIK+++ GF
Sbjct: 4 GLLTILKKMKQK-ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGF 62
Query: 83 KLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPL 142
KLN+WD+GGQ+ +R YWRNYF++TD LI+V+DSAD +R ++ EL LL +E+L G L
Sbjct: 63 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 122
Query: 143 LVYANKQDLLGAAPA 157
L++ANKQDL GA
Sbjct: 123 LIFANKQDLPGALSC 137
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 213 bits (544), Expect = 7e-72
Identities = 47/137 (34%), Positives = 77/137 (56%)
Query: 21 ALGLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSE 80
+ L +E +++++GLDNAGKTTIL + ++ H +PT G N++ +
Sbjct: 4 SHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVIN 63
Query: 81 GFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGV 140
+ +WDIGGQ +R W Y+ NT+ +I V+DS D +R + EL+++L+ E L
Sbjct: 64 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKA 123
Query: 141 PLLVYANKQDLLGAAPA 157
LL++ANKQD+
Sbjct: 124 GLLIFANKQDVKECMTV 140
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 212 bits (542), Expect = 2e-71
Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Query: 24 LLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFK 83
+L L K ++L LGLDNAGKTT+L L ++ ++ + PT + + K
Sbjct: 10 FRDVLASLGLW-NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK 68
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLL 143
+D+GG + R W++YF + +++++D+AD +RF+E+ EL L + +L VP +
Sbjct: 69 FTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFV 128
Query: 144 VYANKQDLLGAAPA 157
+ NK D A
Sbjct: 129 ILGNKIDAPNAVSE 142
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 211 bits (539), Expect = 7e-71
Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 23 GLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGF 82
G ++L+ L +K +++ LGLDNAGKTT+L L + + PT + + G
Sbjct: 11 GFSSVLQFLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69
Query: 83 KLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPL 142
+D+GG + R W+NY + +++++D AD +R ES EL L++DE + VP+
Sbjct: 70 TFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPI 129
Query: 143 LVYANKQDLLGAAPA 157
L+ NK D A
Sbjct: 130 LILGNKIDRPEAISE 144
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 210 bits (537), Expect = 1e-70
Identities = 48/135 (35%), Positives = 76/135 (56%), Gaps = 3/135 (2%)
Query: 24 LLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLAS-EDISHITPTQGFNIKSVQSEGF 82
+ L S ++E+ + L+GL +GKTT + +AS + + PT GFN++ +
Sbjct: 10 HSSGLVPRGS--KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNV 67
Query: 83 KLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPL 142
+ +WDIGGQ + R W Y ++Y++D+AD ++ E S ELH LL +L G+P+
Sbjct: 68 TIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPV 127
Query: 143 LVYANKQDLLGAAPA 157
LV NK+DL GA
Sbjct: 128 LVLGNKRDLPGALDE 142
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 208 bits (531), Expect = 4e-70
Identities = 59/121 (48%), Positives = 79/121 (65%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR 96
+E+RIL+LGLD AGKTTIL L ++ PT GFN+++V + K VWD+GG IR
Sbjct: 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 65
Query: 97 PYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156
PYWR Y+ NTD +IYV+DS D R S EL +L +E+L L+V+ANKQD+ A
Sbjct: 66 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 125
Query: 157 A 157
+
Sbjct: 126 S 126
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 207 bits (530), Expect = 1e-69
Identities = 48/135 (35%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
Query: 23 GLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGF 82
L + +L + +E +++++GLDNAGKTTIL + ++ H +PT G N++ +
Sbjct: 3 ILFTRIWRLFN--HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT 60
Query: 83 KLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPL 142
+ +WDIGGQ +R W Y+ NT+ +I V+DS D +R + EL+++L+ E L L
Sbjct: 61 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 120
Query: 143 LVYANKQDLLGAAPA 157
L++ANKQD+
Sbjct: 121 LIFANKQDVKECMTV 135
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 207 bits (530), Expect = 1e-69
Identities = 60/134 (44%), Positives = 86/134 (64%), Gaps = 2/134 (1%)
Query: 24 LLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFK 83
L L L + ++++R+L+LGLDNAGKT+IL L D+ PT G N++++Q +
Sbjct: 10 LKQTLGLLPA--DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNIS 67
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLL 143
VWD+GGQ +RPYWR YF +TD +IYV+DS D R + EL+ LL +++L LL
Sbjct: 68 FEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLL 127
Query: 144 VYANKQDLLGAAPA 157
++ANKQDL AA
Sbjct: 128 IFANKQDLPDAASE 141
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 206 bits (527), Expect = 3e-69
Identities = 66/131 (50%), Positives = 86/131 (65%), Gaps = 1/131 (0%)
Query: 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNV 86
+ KL S KELRIL+LGLD AGKTTIL L ++ PT GFN++++ + KLNV
Sbjct: 8 MFDKLWGS-NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNV 66
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYA 146
WD+GGQ IRPYWR Y+ +T +I+V+DS D R + ELH +L +E+L LLV+A
Sbjct: 67 WDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFA 126
Query: 147 NKQDLLGAAPA 157
NKQD GA A
Sbjct: 127 NKQDQPGALSA 137
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 205 bits (523), Expect = 1e-68
Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
Query: 21 ALGLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED--ISHITPTQGFNIKSVQ 78
+ L KE+ +L LGLDN+GKTTI+ L + +I PT GF+I+ +
Sbjct: 4 SHHHHHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFK 63
Query: 79 SEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLT 138
S V+D+ GQ + R W +Y+ +I+VIDS+D R + EL LL+ +
Sbjct: 64 SSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIK 123
Query: 139 G--VPLLVYANKQDLLGAAPA 157
+P+L +ANK DL A +
Sbjct: 124 HRRIPILFFANKMDLRDAVTS 144
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 202 bits (516), Expect = 7e-68
Identities = 60/119 (50%), Positives = 81/119 (68%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPY 98
+RIL++GLD AGKTTIL L +I PT GFN+++V+ + VWD+GGQ KIRP
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 99 WRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157
WR+YF NT LI+V+DS D +R E+ EL +L++++L LLV+ANKQDL A A
Sbjct: 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA 119
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 200 bits (512), Expect = 7e-67
Identities = 61/123 (49%), Positives = 85/123 (69%)
Query: 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRK 94
+K++RIL++GLD AGKTTIL L +I PT GFN+++V+ + VWD+GGQ K
Sbjct: 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDK 85
Query: 95 IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGA 154
IRP WR+YF NT LI+V+DS D +R +ES EL ++L +++L LLV+ANKQD+ A
Sbjct: 86 IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145
Query: 155 APA 157
P
Sbjct: 146 MPV 148
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 187 bits (477), Expect = 5e-60
Identities = 64/157 (40%), Positives = 93/157 (59%)
Query: 1 MFQKQNSYERMEKENQVKDLALGLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLAS 60
+F+ + +E ++ + +KE+RIL++GLD AGKTTIL L
Sbjct: 128 LFRDKVVALAEGREWSLESSPAQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKL 187
Query: 61 EDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKR 120
+I PT GFN+++V+ + VWD+GGQ KIRP WR+YF NT LI+V+DS D +R
Sbjct: 188 GEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER 247
Query: 121 FEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157
E+ EL +L++++L LLV+ANKQDL A A
Sbjct: 248 VNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA 284
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 189 bits (482), Expect = 5e-59
Identities = 59/129 (45%), Positives = 81/129 (62%)
Query: 29 KKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWD 88
+ KE+RIL+LGLD AGKTTIL L PT GFN+++V + K NVWD
Sbjct: 313 PGIEGLSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWD 372
Query: 89 IGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANK 148
+GGQ KIRP WR+Y+ T LI+V+D AD R +E+ ELH +++D ++ +L++ANK
Sbjct: 373 VGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 432
Query: 149 QDLLGAAPA 157
QDL A
Sbjct: 433 QDLPDAMKP 441
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 164 bits (418), Expect = 1e-52
Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 9/139 (6%)
Query: 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNV 86
+ + I++ G N+GKT++L L ++ + +Q + + +G + +
Sbjct: 37 LGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTL 95
Query: 87 WDIGGQRKIRPYWRNYFDN----TDILIYVIDSA-DVKRFEESGFELHELLSDEKL---T 138
D G K+R +Y LI+++DS D K+ + L ++LS +
Sbjct: 96 VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN 155
Query: 139 GVPLLVYANKQDLLGAAPA 157
G+ +L+ NK +L A P
Sbjct: 156 GIDILIACNKSELFTARPP 174
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 165 bits (419), Expect = 2e-52
Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 7/132 (5%)
Query: 33 SSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQ---SEGFKLNVWDI 89
+ + +L +GL ++GKT + L + + + + + G L + D+
Sbjct: 2 ARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDL 61
Query: 90 GGQRKIRP-YWRNYFDNTDILIYVIDSADVKRF-EESGFELHELLSDEKLT--GVPLLVY 145
G +R + + +++V+DSA +R ++ L+++L D LL+
Sbjct: 62 PGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIA 121
Query: 146 ANKQDLLGAAPA 157
NKQD+ A A
Sbjct: 122 CNKQDIAMAKSA 133
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 159 bits (404), Expect = 3e-50
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Query: 33 SSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQ 92
+ I++ G N+GKT++L L ++ + +Q + + +G + + D G
Sbjct: 7 KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGH 65
Query: 93 RKIRPYWRNYFDN----TDILIYVIDSA-DVKRFEESGFELHELLSDEKL---TGVPLLV 144
K+R +Y LI+++DS D K+ + L ++LS + G+ +L+
Sbjct: 66 VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 125
Query: 145 YANKQDLLGAAPA 157
NK +L A P
Sbjct: 126 ACNKSELFTARPP 138
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 147 bits (373), Expect = 8e-46
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 22/155 (14%)
Query: 23 GLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHIT-----------PTQG 71
G ++ + E +I+ G +GKTT LK + S+ T
Sbjct: 1 GSMSTINFANR--EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLF 58
Query: 72 FN-----IKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFE--ES 124
F+ I V+ + +++ + GQ + D +++V DSA + ES
Sbjct: 59 FDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAES 118
Query: 125 GFELHELLSD--EKLTGVPLLVYANKQDLLGAAPA 157
+ E L++ L VP+++ NK+DL A P
Sbjct: 119 MRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPV 153
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 125 bits (314), Expect = 6e-37
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 12/127 (9%)
Query: 36 EKELRILLLGLDNAGKTTILKT----LASEDISHITPTQGFNIKSVQSEGF-KLNVWDIG 90
+ RILL+GL +GK++I K ++ + + T + + F +WD
Sbjct: 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFP 77
Query: 91 GQRKIRPYW---RNYFDNTDILIYVIDSADVKRFEESGFELHELLS--DEKLTGVPLLVY 145
GQ F T LIYVID+ D + E+ LH +S + + V+
Sbjct: 78 GQMDFFDPTFDYEMIFRGTGALIYVIDAQD--DYMEALTRLHITVSKAYKVNPDMNFEVF 135
Query: 146 ANKQDLL 152
+K D L
Sbjct: 136 IHKVDGL 142
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 111 bits (279), Expect = 1e-30
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 11/124 (8%)
Query: 40 RILLLGLDNAGKTTILKT----LASEDISHITPTQGFNIKSVQSEGF-KLNVWDIGGQRK 94
++LL+G +GK+++ ++ D + T ++ G LN+WD GGQ
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV 64
Query: 95 -----IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKL-TGVPLLVYANK 148
+ F +LI+V D + ++ L K + V +K
Sbjct: 65 FMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHK 124
Query: 149 QDLL 152
DL+
Sbjct: 125 MDLV 128
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 92.0 bits (228), Expect = 4e-23
Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 8/119 (6%)
Query: 41 ILLLGLDNAGKTTILKTL----ASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIR 96
+LL+G+ GK++I K + D ++ T +++ + L V ++ GQ
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLI-DLAVMELPGQLNYF 60
Query: 97 PYW---RNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152
F + L+YVIDS D + + + + + + V +K D L
Sbjct: 61 EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGL 119
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 83.6 bits (206), Expect = 1e-20
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 85 NVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLS----DEKLTGV 140
G + + P + + D IYV ++ KR E E +++ +G
Sbjct: 105 GDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQD-EFSHIMAMTDPAFGSSGR 163
Query: 141 PLLVY-ANKQDLLGAAPA 157
PLLV Q + P
Sbjct: 164 PLLVLSCISQGDVKRMPC 181
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 73.6 bits (180), Expect = 2e-16
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 88 DIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLS----DEKLTGVPLL 143
G + + P + + D IYV ++ KR E E +++ +G PLL
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQD-EFSHIMAMTDPAFGSSGRPLL 251
Query: 144 VYA-NKQDLLGAAPAGY 159
V + Q + P Y
Sbjct: 252 VLSCISQGDVKRMPCFY 268
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 46.2 bits (110), Expect = 5e-07
Identities = 22/129 (17%), Positives = 51/129 (39%), Gaps = 21/129 (16%)
Query: 38 ELRILLLGLDNAGKTTILKTLASE---DISHITPTQG--FNIKSVQSEG-----FKLNVW 87
++++++G +GKTT+L+ L D+ + T G +Q LNVW
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 88 DIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFE-----LHELLSDEKLTGVPL 142
D G+ + ++ + + V D + ++ + L + + + P+
Sbjct: 62 DFAGREEFYSTHPHFMTQRALYLAVYDLSK----GQAEVDAMKPWLFNI--KARASSSPV 115
Query: 143 LVYANKQDL 151
++ D+
Sbjct: 116 ILVGTHLDV 124
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 47.1 bits (111), Expect = 6e-07
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 61 EDISHIT-PTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADV- 118
+D+ T G Q + +++D+GGQR R W F++ +I+V+ S+
Sbjct: 195 QDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYN 254
Query: 119 ---------KRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152
R +E+ + ++ L + ++++ NKQDLL
Sbjct: 255 MVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 297
Score = 29.4 bits (65), Expect = 0.59
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVW 87
L+K + R+LLLG +GK+TI+K + I GFN + + +
Sbjct: 30 LQKDKQVYRATHRLLLLGAGESGKSTIVKQM------RILHVNGFNGEGGEEDPQAARSN 83
Query: 88 DIGGQRKIRPY-WRNYFDNTDILIY 111
G + N + + ++
Sbjct: 84 SDGEKATKVQDIKNNLKEAIETIVA 108
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 46.2 bits (109), Expect = 9e-07
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 61 EDISHI-TPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD-- 117
+DI PT+G + + + + D+GGQR R W FD+ +++++ S++
Sbjct: 179 QDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFD 238
Query: 118 --------VKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152
R ES ++++ + V ++++ NK DLL
Sbjct: 239 QVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL 281
Score = 27.0 bits (59), Expect = 3.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTL 58
L++ + ++ILLLG +GK+T LK +
Sbjct: 23 LREDGERSARLVKILLLGAGESGKSTFLKQM 53
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 46.5 bits (110), Expect = 9e-07
Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 18/136 (13%)
Query: 29 KKLRSSPEKELRILLLGLDNAGKTTILKTLASE------------DISHIT-PTQGFNIK 75
K +E+++ L+G AGKT++LK L E ++ P
Sbjct: 32 KGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLEN 91
Query: 76 SVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDE 135
+ + + WD GGQ + + + + + + ++ D + + L + ++
Sbjct: 92 DDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLL---DSRTDSNKHYWLRHI--EK 146
Query: 136 KLTGVPLLVYANKQDL 151
P++V NK D
Sbjct: 147 YGGKSPVIVVMNKIDE 162
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 1e-06
Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 27/153 (17%)
Query: 2 FQKQNSYERMEKENQVKDLALGLLAILKKLRSSPEKELRILLLGLDNAGKTT-ILKTLAS 60
F K N R++ +++ L +LR + +L+ G+ +GKT L S
Sbjct: 126 FAKYNVS-RLQPYLKLRQA-------LLELRPAK----NVLIDGVLGSGKTWVALDVCLS 173
Query: 61 EDISHITPTQGF--NIKSVQSEGFKL-NVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD 117
+ + F N+K+ S L + + +I P W + D++ + I S
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 118 VKRFEESGFELHELLSDEKLTGVPLLVYANKQD 150
EL LL + LLV N Q+
Sbjct: 232 A--------ELRRLLKSKPYENC-LLVLLNVQN 255
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 45.9 bits (108), Expect = 1e-06
Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 61 EDISHI-TPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD-- 117
+D+ T G + ++D+GGQR R W + F+ +I+ + +D
Sbjct: 171 QDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 230
Query: 118 --------VKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152
+ R ES + +++ T ++++ NK+DL
Sbjct: 231 LVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 273
Score = 28.5 bits (63), Expect = 1.1
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 28 LKKLRSSPEKELRILLLGLDNAGKTTILKTL 58
L++ +E+++LLLG +GK+TI+K +
Sbjct: 22 LREDGEKAAREVKLLLLGAGESGKSTIVKQM 52
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 43.9 bits (103), Expect = 7e-06
Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Query: 61 EDISHI-TPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSAD-- 117
+D+ + PT G + + D+GGQR R W + F+N +++++ ++
Sbjct: 145 QDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYD 204
Query: 118 --------VKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152
R EES +++ ++++ NK+DLL
Sbjct: 205 QVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL 247
Score = 29.2 bits (65), Expect = 0.59
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 37 KELRILLLGLDNAGKTTILKTL 58
+EL++LLLG +GK+T +K +
Sbjct: 6 RELKLLLLGTGESGKSTFIKQM 27
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 41.4 bits (98), Expect = 3e-05
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 13/130 (10%)
Query: 34 SPEKE--LRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG---FKL 84
S K+ L++++LG GKT+++ ++ + T G F K V +G +
Sbjct: 2 SSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKA-TIGADFLTKEVTVDGDKVATM 60
Query: 85 NVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELL---SDEKLTGVP 141
VWD GQ + + ++ D + V D + FE E L + P
Sbjct: 61 QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120
Query: 142 LLVYANKQDL 151
++ NK D
Sbjct: 121 FVILGNKIDA 130
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 41.2 bits (96), Expect = 6e-05
Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 17/109 (15%)
Query: 61 EDISHI-TPTQG-----FNIKSV-QSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVI 113
ED+ + T G F+ + G ++D+GGQR R W + F+ +I+
Sbjct: 155 EDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCA 214
Query: 114 DSAD----------VKRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152
++ R E+ +L +++ NK D+
Sbjct: 215 AISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIF 263
Score = 28.2 bits (62), Expect = 1.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKTL 58
S ++LLLG +GK+TI K +
Sbjct: 3 MGSGIHIRKLLLLGAGESGKSTIFKQI 29
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 40.1 bits (94), Expect = 7e-05
Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 13/127 (10%)
Query: 33 SSPEKELRILLLGLDNAGKTTILKTLASEDISHI-TPTQGFN---IKSVQSEGFKLNVWD 88
+ ++ +++G GKT +L + + PT N V + L +WD
Sbjct: 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 84
Query: 89 IGGQ---RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFE-LHELLSDEKLTGVPLLV 144
GQ ++RP + TD+ + FE + E+ P+++
Sbjct: 85 TAGQEDYDRLRPL---SYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPNTPIIL 139
Query: 145 YANKQDL 151
K DL
Sbjct: 140 VGTKLDL 146
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 39.6 bits (93), Expect = 1e-04
Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 9/125 (7%)
Query: 33 SSPEKELRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNV 86
P+ + +++L+G GKTT +K + + ++ T G + + K NV
Sbjct: 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYV-ATLGVEVHPLVFHTNRGPIKFNV 68
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYA 146
WD GQ K Y+ I + D ++ +L +P+++
Sbjct: 69 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL--VRVCENIPIVLCG 126
Query: 147 NKQDL 151
NK D+
Sbjct: 127 NKVDI 131
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 2e-04
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 31/120 (25%)
Query: 65 HITPTQGFNIKSVQSEGFKLNVWDIGGQ--RKIRPYWRNYFDNTDILIYVIDSADVKRFE 122
H T GF+I + GG+ ++IR +N +I+ + E
Sbjct: 1652 HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR-------ENYSAMIFETIVDGKLKTE 1704
Query: 123 ESGFELHELLS-------DEKL--TGV--P--LLV-YANKQDL-------LGAAPAGYHS 161
+ E++E + L T P L+ A +DL A AG HS
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG-HS 1763
Score = 38.1 bits (88), Expect = 8e-04
Identities = 31/183 (16%), Positives = 57/183 (31%), Gaps = 43/183 (23%)
Query: 9 ERMEKENQVKDLALGLLAILKKLRSS--PEKELRILLLGLDNAGKTTILKT-------LA 59
+E + + L L + + ++ L L TT++KT +
Sbjct: 70 SLVEPSKVGQFDQV-LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 60 SEDISHITPTQGFN---IKSVQSEGFKLNVWDI-GGQRKIRPYW---RN----YFDNTDI 108
+ ++ + N ++V +L I GGQ Y+ R+ Y
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVA--IFGGQGNTDDYFEELRDLYQTYHVLVGD 186
Query: 109 LIYVI---------DSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPAGY 159
LI + D ++ G + E L + T P +D L + P
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT--P------DKDYLLSIPI-- 236
Query: 160 HSF 162
S
Sbjct: 237 -SC 238
Score = 33.1 bits (75), Expect = 0.040
Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 43/153 (28%)
Query: 17 VKDLALG-LLAILKKLRSS--PEKELRILLL-GLDN---AGKTTILKTLASEDISHITPT 69
+ +L + + K S K++ I L+ G N +G L L +
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT-LRKAKAP 399
Query: 70 QGFNIKSVQSE-GFKLNVWDIGGQRKIRPYWRNYFD------NTDILIYVID--SADVKR 120
G + QS F +RK++ R F ++ +L+ D + D+ +
Sbjct: 400 SGLD----QSRIPFS--------ERKLKFSNR--FLPVASPFHSHLLVPASDLINKDLVK 445
Query: 121 FEESGFELHELLSDEKLTGVPLLVYANK--QDL 151
S F ++ +P VY DL
Sbjct: 446 NNVS-FNAKDI-------QIP--VYDTFDGSDL 468
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 39.0 bits (91), Expect = 2e-04
Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 13/125 (10%)
Query: 35 PEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKS----VQSEGFKLNVWDIG 90
+ ++ +++G GKT +L + + F+ S V + L +WD
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 91 GQ---RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFE-LHELLSDEKLTGVPLLVYA 146
GQ ++RP + TD+ + FE + E+ P+++
Sbjct: 62 GQEDYDRLRPL---SYPQTDVSLICFSLVSPASFENVRAKWYPEVR--HHCPNTPIILVG 116
Query: 147 NKQDL 151
K DL
Sbjct: 117 TKLDL 121
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 38.7 bits (91), Expect = 2e-04
Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 10/122 (8%)
Query: 39 LRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQ 92
+++LLG GK++++ + D T G F K ++ +G + +WD GQ
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFH-TIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELL---SDEKLTGVPLLVYANKQ 149
+ R ++ +D + D + F+ E + ++ P ++ NK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 150 DL 151
D+
Sbjct: 127 DI 128
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 39.1 bits (91), Expect = 2e-04
Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 13/126 (10%)
Query: 34 SPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQGF----NIKSVQSEGFKLNVWDI 89
+++L+G GKT +L+ LA + F + + +L++WD
Sbjct: 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDT 82
Query: 90 GGQ---RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFE-LHELLSDEKLTGVPLLVY 145
G +RP + ++D ++ D + + + + + E+L + +L+
Sbjct: 83 SGSPYYDNVRPL---CYSDSDAVLLCFDISRPETVDSALKKWRTEIL--DYCPSTRVLLI 137
Query: 146 ANKQDL 151
K DL
Sbjct: 138 GCKTDL 143
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 38.4 bits (90), Expect = 4e-04
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 10/122 (8%)
Query: 39 LRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQ 92
L++++LG GKT+++ ++ + T G F K V + + +WD GQ
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKA-TIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELL---SDEKLTGVPLLVYANKQ 149
+ + ++ D + V D F+ E L S P +V NK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 150 DL 151
DL
Sbjct: 128 DL 129
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 38.3 bits (89), Expect = 4e-04
Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 24/158 (15%)
Query: 24 LLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQG----FNIKSVQS 79
L+ KL+ + +L+LG GK++ + +L E + ++P Q + S
Sbjct: 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM 81
Query: 80 EGFKLNVWDIGG-----------QRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFEL 128
GF +N+ D G I+ + N D+L+YV DV +E ++
Sbjct: 82 GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTI--DVLLYVDR-LDVYAVDELDKQV 138
Query: 129 ----HELLSDEKLTGVPLLVYANKQDLLGAAPAGYHSF 162
+ E L++ Y +F
Sbjct: 139 VIAITQTFGKEIWCKTLLVL--THAQFSPPDELSYETF 174
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 38.4 bits (89), Expect = 5e-04
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 24 LLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHITP----TQGFNIKSVQS 79
LL +L L+ L IL++G GK++ + ++ E + I+P + S
Sbjct: 25 LLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR 84
Query: 80 EGFKLNVWD 88
GF LN+ D
Sbjct: 85 AGFTLNIID 93
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 38.0 bits (88), Expect = 5e-04
Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 16/117 (13%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKTLASEDI-----SHITPTQGFNIKSVQSEGFKLNV 86
+ +LRI+L+G AGK+ ++ + + + T+ +S + +L V
Sbjct: 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVV 82
Query: 87 WD-------IGGQRKIRPYWRNYFDNT----DILIYVIDSADVKRFEESGFELHELL 132
D + T L+ V+ E E +
Sbjct: 83 VDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKM 139
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 37.2 bits (87), Expect = 7e-04
Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 12/131 (9%)
Query: 30 KLRSSPEKELRILLLGLDNAGKTTILKTLA-SEDISHITPTQG--FNIKSVQSEG--FKL 84
+ + +++L+G GK+T+ T + S P + + + L
Sbjct: 15 YFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTL 74
Query: 85 NVWDIGGQRKIRPYWRN-YFDNTD--ILIYVIDSADVKRFEESGFELHELLSDEKLT-GV 140
V+DI Q + R+ D ++++ + + F + E L + +
Sbjct: 75 VVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDR--RSFSKVP-ETLLRLRAGRPHHDL 131
Query: 141 PLLVYANKQDL 151
P+++ NK DL
Sbjct: 132 PVILVGNKSDL 142
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 37.2 bits (87), Expect = 0.001
Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 10/130 (7%)
Query: 29 KKLRSSPEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK---SVQSEGFKL 84
+ L E +++++G GK+ + L + PT + + + E L
Sbjct: 12 ENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLL 71
Query: 85 NVWDIGGQRKIRPYWRNYFDNTD--ILIYVIDSADVKRFEESGFELHELLSDEKLT-GVP 141
++ D GQ + Y + + ++ I+++ K F + E + K + VP
Sbjct: 72 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNS--KSFADIN-LYREQIKRVKDSDDVP 128
Query: 142 LLVYANKQDL 151
+++ NK DL
Sbjct: 129 MVLVGNKCDL 138
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 36.7 bits (86), Expect = 0.001
Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 12/121 (9%)
Query: 40 RILLLGLDNAGKTTILKTLA-SEDISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQRK 94
+++L+G GK+T+ T + + + + L V+DI Q
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 95 IRPYWR-NYFDNTD--ILIYVIDSADVKRFEESGFELHELLSDEKLT-GVPLLVYANKQD 150
+ + + D ++++ + D + F + E L + +P+++ NK D
Sbjct: 64 AGGWLQDHCLQTGDAFLIVFSV--TDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSD 120
Query: 151 L 151
L
Sbjct: 121 L 121
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 37.4 bits (86), Expect = 0.001
Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 15/154 (9%)
Query: 9 ERMEKENQVKDLALGLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTL-----ASEDI 63
+E + ++ L AI L+ L + + G +GK++ + TL E
Sbjct: 40 NLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGA 99
Query: 64 SHITPTQGFN-IKSVQSEGFK-LNVWDIGGQRKIRPYWRNYFDNTDILIY---VIDSADV 118
+ + + + WD+ G Y + Y +I SA
Sbjct: 100 AKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISAT- 158
Query: 119 KRFEESGFELHELLSDEKLTGVPLLVYANKQDLL 152
RF+++ ++ + +S K D
Sbjct: 159 -RFKKNDIDIAKAISM---MKKEFYFVRTKVDSD 188
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 37.3 bits (86), Expect = 0.001
Identities = 14/119 (11%), Positives = 39/119 (32%), Gaps = 16/119 (13%)
Query: 30 KLRSSPEKELRILLLGLDNAGKTTILKTLASED-----ISHITPTQGFNIKSVQSEGFKL 84
K + + ELRI+L+G GK+ ++ + + T T+ + ++
Sbjct: 14 KGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREI 73
Query: 85 NVWDIGG-------QRKIRPYWRNYFDNT----DILIYVIDSADVKRFEESGFELHELL 132
+ D + + + + +L+ V ++ + + +
Sbjct: 74 VIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEI 132
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 37.0 bits (86), Expect = 0.001
Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 13/126 (10%)
Query: 34 SPEKELRILLLGLDNAGKTTILKTLASEDI-SHITPT---QGFNIKSVQSEGFKLNVWDI 89
+ + ++ +L+G GKT+++ + + + PT + SV +L + D
Sbjct: 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDT 75
Query: 90 GGQ---RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFE-LHELLSDEKLTGVPLLVY 145
GQ K+RP + NTDI + F+ + + E+ P+++
Sbjct: 76 AGQDEFDKLRPL---CYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR--CHCPKAPIILV 130
Query: 146 ANKQDL 151
+ DL
Sbjct: 131 GTQSDL 136
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 37.0 bits (86), Expect = 0.001
Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 13/137 (9%)
Query: 23 GLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDISHI-TPT---QGFNIKSVQ 78
G+ + L +++++G GKT +L + ++ + PT V
Sbjct: 10 GVDLGTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVD 69
Query: 79 SEGFKLNVWDIGGQ---RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFE-LHELLSD 134
+ +L +WD GQ ++RP + +TD+++ E + + E+
Sbjct: 70 GKQVELALWDTAGQEDYDRLRPL---SYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-- 124
Query: 135 EKLTGVPLLVYANKQDL 151
VP+++ ANK+DL
Sbjct: 125 HFCPNVPIILVANKKDL 141
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 36.6 bits (85), Expect = 0.001
Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 13/127 (10%)
Query: 33 SSPEKELRILLLGLDNAGKTTILKTLASEDISHI-TPT---QGFNIKSVQSEGFKLNVWD 88
S+ + +I+++G GKT +L A + PT + ++ +L++WD
Sbjct: 2 SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWD 61
Query: 89 IGGQ---RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFE-LHELLSDEKLTGVPLLV 144
G +RP + ++D ++ D + + + + E+ E +L+
Sbjct: 62 TSGSPYYDNVRPL---SYPDSDAVLICFDISRPETLDSVLKKWKGEI--QEFCPNTKMLL 116
Query: 145 YANKQDL 151
K DL
Sbjct: 117 VGCKSDL 123
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 37.1 bits (87), Expect = 0.001
Identities = 33/172 (19%), Positives = 62/172 (36%), Gaps = 41/172 (23%)
Query: 14 ENQVKDLALGLLAILKKLRSSPE-----KE-LRILLLGLDNAGKTTILKTLASEDISHIT 67
+++ L + + +L S + E + ++ G NAGK+T+L TL ++ + ++
Sbjct: 203 RDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVS 262
Query: 68 PTQG---------FNIKSVQSEGFKLNVWD-------------IGGQRKIRPYWRNYFDN 105
G F + + D G +R R
Sbjct: 263 HMPGTTRDYIEECFIH-----DKTMFRLTDTAGLREAGEEIEHEGIRRS-----RMKMAE 312
Query: 106 TDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAPA 157
D+++Y++D +R ++ E+ EL L ANK D A A
Sbjct: 313 ADLILYLLDLGT-ERLDDELTEIRELK--AAHPAAKFLTVANKLDRAANADA 361
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 36.4 bits (85), Expect = 0.001
Identities = 26/141 (18%), Positives = 54/141 (38%), Gaps = 34/141 (24%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQG---------FNIKSVQSEGFKLNVWD- 88
+++++ G NAGK+++L LA + + +T G +I +G L++ D
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI-----DGMPLHIIDT 59
Query: 89 ------------IGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEK 136
IG +R + D +++++D + + E+
Sbjct: 60 AGLREASDEVERIGIERA-----WQEIEQADRVLFMVDGTTTDAVDPA--EIWPEFIARL 112
Query: 137 LTGVPLLVYANKQDLLGAAPA 157
+P+ V NK D+ G
Sbjct: 113 PAKLPITVVRNKADITGETLG 133
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 36.6 bits (84), Expect = 0.002
Identities = 14/119 (11%), Positives = 33/119 (27%), Gaps = 17/119 (14%)
Query: 29 KKLRSSPEKELRILLLGLDNAGKTTILKTLASED-----ISHITPTQGFNIKSVQSEGFK 83
+ L E R++L+G AGK+ ++ + + + T+ S + +
Sbjct: 12 ENLYFQGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCH 71
Query: 84 LNVWDIGG------------QRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHE 130
+ V D + + L+ V ++
Sbjct: 72 VEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVR 130
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 36.0 bits (84), Expect = 0.002
Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 20/135 (14%)
Query: 29 KKLRSSPEKELRILLLGLDNAGKTTILKTLASEDI---SHITPTQG-FNIKSVQSEG--F 82
+ S +++++G GK+ + + I + PT +K + +
Sbjct: 9 SAVPSENLPTYKLVVVGDGGVGKSALTIQFF-QKIFVDDYD-PTIEDSYLKHTEIDNQWA 66
Query: 83 KLNVWDIGGQ---RKIRPYWRNYFDNTD--ILIYVIDSADVKRFEESGFELHELLSDEKL 137
L+V D GQ +R Y D +++Y + FE H+L+ K
Sbjct: 67 ILDVLDTAGQEEFSAMR---EQYMRTGDGFLIVYSVTDK--ASFEHVD-RFHQLILRVKD 120
Query: 138 T-GVPLLVYANKQDL 151
P+++ ANK DL
Sbjct: 121 RESFPMILVANKVDL 135
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 35.9 bits (83), Expect = 0.002
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDIS-HITPTQG--FNIKSVQSEG--FKLNVWDIGG 91
++++LLG GK++I+ S D + + PT G F + V K +WD G
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61
Query: 92 QRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQD 150
Q + Y+ N + V D + F ++ + E L ++ + + + NK D
Sbjct: 62 QERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVGNKID 119
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 35.4 bits (82), Expect = 0.003
Identities = 28/125 (22%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 33 SSPEKELRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNV 86
+P ++ +++ LG + GKT+++ + D ++ T G F K++ E +L +
Sbjct: 11 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQ-ATIGIDFLSKTMYLEDRTVRLQL 69
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYA 146
WD G + R +Y ++ + + V D +V F+++ + + + E+ + V +++
Sbjct: 70 WDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDD-VRTERGSDVIIMLVG 128
Query: 147 NKQDL 151
NK DL
Sbjct: 129 NKTDL 133
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 35.3 bits (82), Expect = 0.003
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
Query: 33 SSPEKELRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNV 86
S +K +I+L G GK++ L L + T G F +K++ +G L +
Sbjct: 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISA-TLGVDFQMKTLIVDGERTVLQL 81
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYA 146
WD GQ + R ++YF D ++ + D K F + + D VP+++
Sbjct: 82 WDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDM-IEDAAHETVPIMLVG 140
Query: 147 NKQDL 151
NK D+
Sbjct: 141 NKADI 145
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 35.2 bits (82), Expect = 0.004
Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 16/128 (12%)
Query: 34 SPEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQG-FNIKSVQSEG--FKLNVWDI 89
P + +++++G GK+ + +S PT K +G +L++ D
Sbjct: 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDT 64
Query: 90 GGQ---RKIRPYWRNYFDNTD--ILIYVIDSADVKRFEESGFELHELLSDEKLT-GVPLL 143
GQ +R Y +L++ I+ + F E G +L + K P++
Sbjct: 65 AGQEEFGAMR---EQYMRAGHGFLLVFAINDR--QSFNEVG-KLFTQILRVKDRDDFPVV 118
Query: 144 VYANKQDL 151
+ NK DL
Sbjct: 119 LVGNKADL 126
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 35.0 bits (81), Expect = 0.004
Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 33 SSPEKELRILLLGLDNA-GKTTILKTLASEDISHI-TPTQGFN-IKSVQSEG--FKLNVW 87
+ +K L+I+++G D A GKT +L + +I PT N ++ + F L++W
Sbjct: 18 ENGKKALKIVVVG-DGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLW 76
Query: 88 DIGGQ---RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFE-LHELLSDEKLTGVPLL 143
D GQ ++RP + ++D+++ + F+ + E+ + +
Sbjct: 77 DTAGQEEYDRLRPL---SYADSDVVLLCFAVNNRTSFDNISTKWEPEIK--HYIDTAKTV 131
Query: 144 VYANKQDL 151
+ K DL
Sbjct: 132 LVGLKVDL 139
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 35.2 bits (81), Expect = 0.005
Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 11/127 (8%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKTLASEDISHI-TPT---QGFNIKSVQSEGFKLNVW 87
L+ +++G GKT +L + A++ PT +V + + L ++
Sbjct: 12 HGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLY 71
Query: 88 DIGGQ---RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLV 144
D GQ ++RP + TD+ + + F+ E L + VP L+
Sbjct: 72 DTAGQEDYDRLRPL---SYPMTDVFLICFSVVNPASFQNVKEEWVPELKE-YAPNVPFLL 127
Query: 145 YANKQDL 151
+ DL
Sbjct: 128 IGTQIDL 134
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 34.8 bits (81), Expect = 0.005
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 39 LRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQ 92
++ILL+G GK+ +L + + S IT T G F IK+V G KL +WD GQ
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFIT-TIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL--LSDEKLTGVPLLVYANKQD 150
+ R Y+ +I V D D + F + +++ LL+ NK D
Sbjct: 63 ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND---EAQLLLVGNKSD 119
Query: 151 L 151
+
Sbjct: 120 M 120
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 34.9 bits (81), Expect = 0.006
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Query: 39 LRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQ 92
L+IL++G GK+++L + D T G F +K++ +G KL +WD GQ
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAA-TIGVDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
+ R +Y+ +I V D F + L+EL + + ++ NK D
Sbjct: 75 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 133
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 34.4 bits (80), Expect = 0.006
Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 12/124 (9%)
Query: 37 KELRILLLGLDNAGKTTILKTLA-SEDISHITPT-QGFNIKSVQSEG--FKLNVWDIGGQ 92
R++LLG GKT++ A ++ + +++ +G L V D
Sbjct: 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 93 RKIRPYW--RNYFDNTD--ILIYVIDSADVKRFEESGFELHELLSDEKLT-GVPLLVYAN 147
K+ W + +++Y I FE + EL L VP+++ N
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADR--GSFESAS-ELRIQLRRTHQADHVPIILVGN 119
Query: 148 KQDL 151
K DL
Sbjct: 120 KADL 123
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 34.5 bits (80), Expect = 0.006
Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 39 LRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQ 92
++L++G + GKT+ L A + + ++ T G F +K+V KL +WD GQ
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVS-TVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL--LSDEKLTGVPLLVYANKQD 150
+ R Y+ I + D + + F ++ S + +++ NK D
Sbjct: 83 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD---NAQVILVGNKCD 139
Query: 151 L 151
+
Sbjct: 140 M 140
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 34.5 bits (80), Expect = 0.006
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 39 LRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQ 92
++L++G GK+++L A S+IT T G F I++V+ G KL +WD GQ
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYIT-TIGVDFKIRTVEINGEKVKLQIWDTAGQ 68
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
+ R Y+ T +I V D + F LHE+ ++ V ++ NK D
Sbjct: 69 ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGNKNDD 125
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 34.4 bits (80), Expect = 0.006
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 40 RILLLGLDNAGKTTILKTLASEDISHITPTQG-FNIKSVQSEG--FKLNVWDIGGQ---R 93
++LLLG GK+ + + + G +S+ +G L V+DI Q R
Sbjct: 4 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 63
Query: 94 KIRPYWRNYFDNTD--ILIYVIDSADVKRFEESGFELHELLSDEKLT-GVPLLVYANKQD 150
+ + D +++Y + FE++ EL L + T VP+++ NK D
Sbjct: 64 WLP---GHCMAMGDAYVIVYSVTDK--GSFEKAS-ELRVQLRRARQTDDVPIILVGNKSD 117
Query: 151 L 151
L
Sbjct: 118 L 118
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 34.5 bits (80), Expect = 0.007
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 39 LRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQ 92
++LL+G + GKT+ L A + + ++ T G F +K+V KL +WD GQ
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVS-TVGIDFKVKTVYRHDKRIKLQIWDTAGQ 81
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL--LSDEKLTGVPLLVYANKQD 150
+ R Y+ + + D A+ + F ++ S + +++ NK D
Sbjct: 82 ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD---NAQVILVGNKCD 138
Query: 151 L 151
L
Sbjct: 139 L 139
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 34.4 bits (80), Expect = 0.007
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 12/128 (9%)
Query: 34 SPEKELRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG---FKLNV 86
S ++L+I++LG +GKT++ A E + T G F ++ + G L +
Sbjct: 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQ-TIGLDFFLRRITLPGNLNVTLQI 60
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESG---FELHELLSDEKLTGVPLL 143
WDIGGQ Y ++ V D + + FE + ++ + + + L
Sbjct: 61 WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVAL 120
Query: 144 VYANKQDL 151
V NK DL
Sbjct: 121 V-GNKIDL 127
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 34.6 bits (80), Expect = 0.007
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 39 LRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQ 92
++ILL+G GK+ +L + + S IT T G F IK+V G KL +WD GQ
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFIT-TIGIDFKIKTVDINGKKVKLQLWDTAGQ 79
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL--LSDEKLTGVPLLVYANKQD 150
+ R Y+ +I V D D + F + +++ LL+ NK D
Sbjct: 80 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND---EAQLLLVGNKSD 136
Query: 151 L 151
+
Sbjct: 137 M 137
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 34.5 bits (80), Expect = 0.007
Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 12/121 (9%)
Query: 39 LRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQ 92
+ +++G GK+ +L + H T G F + V +G KL +WD GQ
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVNIDGKQIKLQIWDTAGQ 80
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL--LSDEKLTGVPLLVYANKQD 150
R R+Y+ + V D + F L + S + V +L+ NK D
Sbjct: 81 ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNM--VIMLI-GNKSD 137
Query: 151 L 151
L
Sbjct: 138 L 138
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 34.5 bits (80), Expect = 0.007
Identities = 19/120 (15%), Positives = 51/120 (42%), Gaps = 12/120 (10%)
Query: 37 KELRILLLGLDNAGKTTILKTLAS-EDISHITPTQGFNIKSVQSEG--FKLNVWDIGGQR 93
EL++ ++G ++GK+ ++ + + +P G K + +G + L + D GG
Sbjct: 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPP 78
Query: 94 KIRPYWRNYFDNTD--ILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
+++ + D + ++ ++ F+ L S + VP+++ + +
Sbjct: 79 ELQ-----FAAWVDAVVFVFSLEDE--ISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAI 131
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 34.1 bits (79), Expect = 0.008
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 39 LRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQ 92
++LL+G GKT +L + + + + I+ T G F I++++ +G KL +WD GQ
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFIS-TIGIDFKIRTIELDGKRIKLQIWDTAGQ 67
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL--LSDEKLTGVPLLVYANKQD 150
+ R Y+ ++ V D + K F+ + + + V ++ NK D
Sbjct: 68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA---DVEKMILGNKCD 124
Query: 151 L 151
+
Sbjct: 125 V 125
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 34.1 bits (79), Expect = 0.009
Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 11/127 (8%)
Query: 33 SSPEKELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK---SVQSEGFKLNVWD 88
+ R+++ G GK++++ PT + S L + D
Sbjct: 3 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITD 62
Query: 89 IGGQRKIRPYWRNYFDNTD--ILIYVIDSADVKRFEESGFELHELLSDEKLTG--VPLLV 144
G + R IL++ + S + EE G +++L+ K + +P+++
Sbjct: 63 TTGSHQFPAMQRLSISKGHAFILVFSVTSK--QSLEELG-PIYKLIVQIKGSVEDIPVML 119
Query: 145 YANKQDL 151
NK D
Sbjct: 120 VGNKCDE 126
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 34.1 bits (79), Expect = 0.010
Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 11/120 (9%)
Query: 40 RILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQR 93
+++L+G GKT +L T G F K + +G KL +WD GQ
Sbjct: 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL--LSDEKLTGVPLLVYANKQDL 151
+ R Y+ + L+ + D + F+ L E+ + V L++ NK D
Sbjct: 72 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH---DVALMLLGNKVDS 128
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 34.1 bits (79), Expect = 0.011
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 12/121 (9%)
Query: 39 LRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQ 92
+ L++G GK+ +L T G F + V G KL +WD GQ
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSN-HTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL--LSDEKLTGVPLLVYANKQD 150
+ R R+Y+ + V D + + L + L+ + V +L NK+D
Sbjct: 85 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNI--VVILC-GNKKD 141
Query: 151 L 151
L
Sbjct: 142 L 142
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 34.4 bits (78), Expect = 0.011
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 13 KENQVKDLALGLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLAS 60
K N L +L+K+R S + R++++G GKT++ +TL S
Sbjct: 113 KPNHTMKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCS 160
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 34.5 bits (80), Expect = 0.011
Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 46/170 (27%)
Query: 16 QVKDLALGLLAILKKLRSSPE-----KE-LRILLLGLDNAGKTTILKTLASEDISHITPT 69
+V + L + + LR++++G N GK+T+L L +ED + +T
Sbjct: 215 EVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDI 274
Query: 70 QG---------FNIKSVQSEGFKLNVWD--------------IGGQRKIRPYWRNYFDNT 106
G I G + D +G +R +
Sbjct: 275 PGTTRDVISEEIVI-----RGILFRIVDTAGVRSETNDLVERLGIERT-----LQEIEKA 324
Query: 107 DILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156
DI+++V+D++ E ++L E++ LV NK D++
Sbjct: 325 DIVLFVLDAS-----SPLDEEDRKIL--ERIKNKRYLVVINKVDVVEKIN 367
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 34.4 bits (80), Expect = 0.012
Identities = 30/171 (17%), Positives = 63/171 (36%), Gaps = 45/171 (26%)
Query: 14 ENQVKDLALGLLAILKKLRSSPE-----KE-LRILLLGLDNAGKTTILKTLASEDISHIT 67
+ + + A + +L ++ + + L++ ++G N GK+++L + D + +T
Sbjct: 194 DEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVT 253
Query: 68 PTQG---------FNIKSVQSEGFKLNVWD-------------IGGQRKIRPYWRNYFDN 105
G + G + V D IG +R R +
Sbjct: 254 DLPGTTRDVVESQLVV-----GGIPVQVLDTAGIRETSDQVEKIGVERS-----RQAANT 303
Query: 106 TDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156
D+++ ID+A E+ E++ PL++ NK DL+
Sbjct: 304 ADLVLLTIDAA-----TGWTTGDQEIY--EQVKHRPLILVMNKIDLVEKQL 347
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 33.8 bits (78), Expect = 0.012
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 12/119 (10%)
Query: 41 ILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQRK 94
+LL+G GK+ +L + + +I+ T G F IK+V+ +G KL +WD GQ +
Sbjct: 11 LLLIGNSGVGKSCLLLRFSDDTYTNDYIS-TIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 95 IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL--LSDEKLTGVPLLVYANKQDL 151
R +Y+ + +I V D D + F L E+ + + + LLV NK DL
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTV--LKLLV-GNKCDL 125
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 33.8 bits (78), Expect = 0.012
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 40 RILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQR 93
+I+L+G GKT +++ T G F IK+V+ G KL +WD GQ
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGA-TIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL--LSDEKLTGVPLLVYANKQDL 151
+ R ++Y+ + + LI D + F L E+ + K+ + +LV NK DL
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKV--ITVLV-GNKIDL 143
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 33.7 bits (78), Expect = 0.013
Identities = 28/125 (22%), Positives = 62/125 (49%), Gaps = 8/125 (6%)
Query: 33 SSPEKELRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNV 86
+P ++ +++ LG + GKT+++ + D ++ T G F K++ E +L +
Sbjct: 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQ-ATIGIDFLSKTMYLEDRTVRLQL 67
Query: 87 WDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYA 146
WD GQ + R +Y ++ + + V D + F ++ + + + E+ + V +++
Sbjct: 68 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDD-VRTERGSDVIIMLVG 126
Query: 147 NKQDL 151
NK DL
Sbjct: 127 NKTDL 131
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 33.8 bits (78), Expect = 0.013
Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 12/121 (9%)
Query: 39 LRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQ 92
+IL++G + GKT+ L A + + ++ T G F +K++ KL +WD G
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVS-TVGIDFKVKTIYRNDKRIKLQIWDTAGL 67
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL--LSDEKLTGVPLLVYANKQD 150
+ R Y+ I + D + + F ++ S + +L+ NK D
Sbjct: 68 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD---NAQVLLVGNKCD 124
Query: 151 L 151
+
Sbjct: 125 M 125
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 33.8 bits (78), Expect = 0.013
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 39 LRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQ 92
++LL+G GK+ +L A + S+I+ T G F I++++ +G KL +WD GQ
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYIS-TIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL--LSDEKLTGVPLLVYANKQD 150
+ R +Y+ +I V D D + F L E+ + E V L+ NK D
Sbjct: 93 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKCD 149
Query: 151 L 151
L
Sbjct: 150 L 150
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 33.3 bits (77), Expect = 0.016
Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 15/133 (11%)
Query: 29 KKLRSSPEKELRILLLGLDNAGKTTILKTLA-SEDISHITPTQGFNIK---SVQSEGFKL 84
+ L E+ + +LG AGK+ + IS P +V + L
Sbjct: 12 ENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHL 71
Query: 85 NVWDIGGQRKIRPYWRNYFDNTD--ILIYVIDSA----DVKRFEESGFELHELLSDEKLT 138
V D R R Y + +++Y +DS + EL L + E
Sbjct: 72 RVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSY----LELLALHAKETQR 126
Query: 139 GVPLLVYANKQDL 151
+P L+ NK D+
Sbjct: 127 SIPALLLGNKLDM 139
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 33.4 bits (77), Expect = 0.017
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 40 RILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQR 93
++LL+G GK+ +L A + S+I+ T G F I++++ +G KL +WD GQ
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYIS-TIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL--LSDEKLTGVPLLVYANKQDL 151
+ R +Y+ +I V D D + F L E+ + E V L+ NK DL
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKCDL 133
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 33.3 bits (77), Expect = 0.018
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 12/121 (9%)
Query: 39 LRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQ 92
+ L++G GK+ +L + T G F K + G KL +WD GQ
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSN-HTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL--LSDEKLTGVPLLVYANKQD 150
+ R R+Y+ + V D + + L + L+ + + V +L NK+D
Sbjct: 70 ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI--VIILC-GNKKD 126
Query: 151 L 151
L
Sbjct: 127 L 127
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 33.0 bits (76), Expect = 0.020
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 12/120 (10%)
Query: 40 RILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQR 93
+++L+G GK+ +L ++ T G F +S+Q +G K +WD GQ
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL--LSDEKLTGVPLLVYANKQDL 151
+ R Y+ + V D A +E L EL +D + V +LV NK DL
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI--VIMLV-GNKSDL 122
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 33.1 bits (76), Expect = 0.020
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)
Query: 40 RILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQR 93
+I+L+G GK+ +L ++ T G F ++++ EG K +WD GQ
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSK-STIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL--LSDEKLTGVPLLVYANKQDL 151
+ R Y+ + V D + +E L EL +D+ + L+ NK DL
Sbjct: 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNV--AVGLI-GNKSDL 130
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 32.9 bits (76), Expect = 0.022
Identities = 22/119 (18%), Positives = 50/119 (42%), Gaps = 9/119 (7%)
Query: 39 LRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQ 92
++++++G GK+++++ + T G F + +Q +L +WD GQ
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKK-TIGVDFLERQIQVNDEDVRLMLWDTAGQ 64
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
+ + Y+ + V + D + FE ++ ++ +P + NK DL
Sbjct: 65 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV--VAEVGDIPTALVQNKIDL 121
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 33.1 bits (76), Expect = 0.023
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 41 ILLLGLDNAGKTTILKTLASE--DISHITPTQG---FNIKSVQSEG--FKLNVWDIGGQ- 92
I L+G GKTT + + + ++ T G + + +G K NVWD GQ
Sbjct: 14 ICLIGDGGVGKTTYINRVLDGRFEKNYN-ATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 93 --RKIRP-YWRN 101
++ Y+
Sbjct: 73 KKAVLKDVYYIG 84
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 33.0 bits (76), Expect = 0.026
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 40 RILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQR 93
+++L+G + GKT +++ + + T G F +K+++ +G KL +WD GQ
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGS-TIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL--LSDEKLTGVPLLVYANKQDL 151
+ R ++Y+ + + I D F + ++ + + V LL+ NK DL
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNI--VQLLI-GNKSDL 146
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 33.0 bits (76), Expect = 0.027
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 39 LRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQ 92
L+++++G GKT++++ + + + T G F IK+V+ G +L +WD GQ
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKS-TVGVDFKIKTVELRGKKIRLQIWDTAGQ 85
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL--LSDEKLTGVPLLVYANKQD 150
+ Y+ + +I V D + F++ + + + E LL+ NK D
Sbjct: 86 ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE---DAELLLVGNKLD 142
Query: 151 L 151
Sbjct: 143 C 143
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 32.8 bits (75), Expect = 0.028
Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 37/160 (23%)
Query: 14 ENQVKDLALGLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTL--ASEDIS--HITPT 69
+ GL +I ++ I+L G N GK++ + + A+ D+ T T
Sbjct: 12 SGRENLYFQGLPSINPHKKT-------IILSGAPNVGKSSFMNIVSRANVDVQSYSFT-T 63
Query: 70 QGFNIKSVQSEGFKLNVWDIGGQRKI--RPYW-RNYFDNT---------DILIYVIDSAD 117
+ + + K + D G + R + RN + T +++++ID +
Sbjct: 64 KNLYVGHFDHKLNKYQIIDTPG---LLDRAFENRNTIEMTTITALAHINGVILFIIDIS- 119
Query: 118 VKRFEESGFELHELLS-----DEKLTGVPLLVYANKQDLL 152
E+ G + E ++ + +++ NK D
Sbjct: 120 ----EQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKC 155
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 32.5 bits (75), Expect = 0.028
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 10/120 (8%)
Query: 39 LRILLLGLDNAGKTTILKTLASED-ISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQR 93
+ +++G GK+ +L + ++ T G F + ++ G KL +WD GQ
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL--LSDEKLTGVPLLVYANKQDL 151
+ R R+Y+ + V D + L + L++ V +L+ NK DL
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT--VIILI-GNKADL 132
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 32.5 bits (75), Expect = 0.031
Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 22/131 (16%)
Query: 34 SPEKELRILLLGLDNAGKTTILKTLASEDI---SHITPTQG--FNIKSVQSEG--FKLNV 86
K +I +LG + GK+++ E S+ PT F K + G + L +
Sbjct: 2 PQSKSRKIAILGYRSVGKSSLTIQFV-EGQFVDSYD-PTIENTFT-KLITVNGQEYHLQL 58
Query: 87 WDIGGQ---RKIRPYWRNYFDNTD--ILIYVIDSADVKRFEESGFELHELLSDEKLT-GV 140
D GQ + Y + + IL+Y + S K FE +H L D +
Sbjct: 59 VDTAGQDEYSIFP---QTYSIDINGYILVYSVTSI--KSFEVIK-VIHGKLLDMVGKVQI 112
Query: 141 PLLVYANKQDL 151
P+++ NK+DL
Sbjct: 113 PIMLVGNKKDL 123
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 32.6 bits (75), Expect = 0.034
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 32 RSSPEKELRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLN 85
R S +EL++ LLG GK++I+ + D + PT G F K+V K
Sbjct: 17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNIS-PTIGASFMTKTVPCGNELHKFL 75
Query: 86 VWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVY 145
+WD GQ + Y+ + + V D F + E L + + + +
Sbjct: 76 IWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE-LKEHGPENIVMAIA 134
Query: 146 ANKQDL 151
NK DL
Sbjct: 135 GNKCDL 140
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 31.7 bits (73), Expect = 0.052
Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Query: 37 KELRILLLGLDNAGKTTILKTLASED-ISHITPTQGFNIK---SVQSEGFKLNVWDIGGQ 92
E +++++G GK+ + L + PT + + + E L++ D GQ
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 93 RKIRPYWRNYFDNTD--ILIYVIDSADVKRFEESGFELHELLSDEKLT-GVPLLVYANKQ 149
+ Y + + ++ I++ K FE+ + E + K + VP+++ NK
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNT--KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKS 118
Query: 150 DL 151
DL
Sbjct: 119 DL 120
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 31.8 bits (73), Expect = 0.059
Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 12/120 (10%)
Query: 40 RILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQR 93
+++L+G GKT +L T G F+ ++V K +WD G
Sbjct: 27 KVVLIGESGVGKTNLLSRFTRNEFSHDSR-TTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 94 KIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL--LSDEKLTGVPLLVYANKQDL 151
+ R Y+ + V D + + L EL ++ + V +LV NK DL
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATI--VVMLV-GNKSDL 142
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 31.8 bits (73), Expect = 0.060
Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 14/127 (11%)
Query: 33 SSPEKELRILLLGLDNAGKTTILKTLASEDISHITPTQG-FNIKSVQSEG--FKLNVWDI 89
ELR+ +LG +GK++++ + + T+ K + +G + + +
Sbjct: 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREE 61
Query: 90 GGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTG-----VPLLV 144
G + + D +I+V D F+ LH LS + G + L+
Sbjct: 62 AGAPDAK-----FSGWADAVIFVFSLEDENSFQAVS-RLHGQLSSLRGEGRGGLALALVG 115
Query: 145 YANKQDL 151
++
Sbjct: 116 TQDRISA 122
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 31.8 bits (73), Expect = 0.060
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 12/121 (9%)
Query: 39 LRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQ 92
+++L+G GK+ +L ++ T G F +S+Q +G K +WD G
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 93 RKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL--LSDEKLTGVPLLVYANKQD 150
+ R Y+ + V D A +E L EL +D + V +LV NK D
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI--VIMLV-GNKSD 145
Query: 151 L 151
L
Sbjct: 146 L 146
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 31.8 bits (73), Expect = 0.065
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 77 VQSEGFKLNVWDIGGQ---RKIRPYWRNYFDNTD--ILIYVIDSADVKRFEESGFELHEL 131
+ E ++++ D GQ IR NYF + + + ++ I + F + + E
Sbjct: 57 LDGEEVQIDILDTAGQEDYAAIR---DNYFRSGEGFLCVFSITEM--ESFAATA-DFREQ 110
Query: 132 LSDEKLT-GVPLLVYANKQDL 151
+ K VP L+ NK DL
Sbjct: 111 ILRVKEDENVPFLLVGNKSDL 131
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 31.3 bits (72), Expect = 0.073
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 76 SVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTD--ILIYVIDSADVKRFEESGFELHELLS 133
V + L + D G + Y N L+Y I + F + +L E +
Sbjct: 45 EVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQ--STFNDLQ-DLREQIL 101
Query: 134 DEKLT-GVPLLVYANKQDL 151
K T VP+++ NK DL
Sbjct: 102 RVKDTEDVPMILVGNKCDL 120
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 31.4 bits (72), Expect = 0.086
Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 14/124 (11%)
Query: 37 KELRILLLGLDNAGKTTILKTLASEDI---SHITPTQGFNIK---SVQSEGFKLNVWDIG 90
E +++++G D GK+ + L ++ + PT + + + E L++ D
Sbjct: 3 TEYKLVVVGADGVGKSALTIQLI-QNHFVDEYD-PTIEDSYRKQVVIDGETCLLDILDTA 60
Query: 91 GQRKIRPYWRNYFDNTD--ILIYVIDSADVKRFEESGFELHELLSDEKLT-GVPLLVYAN 147
GQ + Y + + ++ I++ K FE+ E + K + VP+++ N
Sbjct: 61 GQEEYSAMRDQYMRTGEGFLCVFAINNT--KSFEDIH-HYREQIKRVKDSEDVPMVLVGN 117
Query: 148 KQDL 151
K DL
Sbjct: 118 KCDL 121
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 31.0 bits (71), Expect = 0.090
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 39 LRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQ 92
+I+++G N GKT + + T G F ++V +G K+ +WD GQ
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEA-TIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 93 RKIRPYW-RNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
+ R ++Y+ N +++V D ++ F + E +P ++ NK DL
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 31.5 bits (72), Expect = 0.095
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 107 DILIYVIDSADV-KRFEESGFELHELLSDEKLTGVPLLVYANKQDLLGAAP 156
D LI VIDS E+ E+L + ++G P+LV NK D +
Sbjct: 259 DALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDL 309
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 31.0 bits (71), Expect = 0.11
Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 13/126 (10%)
Query: 34 SPEKELRILLLGLDNAGKTTILKTLA-SEDISHITPTQGFNIK---SVQSEGFKLNVWDI 89
+ E+++ + G GK+ ++ I PT + ++ E + + D
Sbjct: 24 AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDT 83
Query: 90 GGQRKIRPYWR-NYFDNTD--ILIYVIDSADVKRFEESGFELHELLSDEKLT-GVPLLVY 145
GQ R + + +L+Y I FEE L +L + K V L++
Sbjct: 84 AGQE--DTIQREGHMRWGEGFVLVYDITDR--GSFEEVL-PLKNILDEIKKPKNVTLILV 138
Query: 146 ANKQDL 151
NK DL
Sbjct: 139 GNKADL 144
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 31.0 bits (71), Expect = 0.11
Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 8/124 (6%)
Query: 34 SPEKELRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVW 87
+ + +++LLG GK++++ T G F ++V + K +W
Sbjct: 2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQE-STIGAAFLTQTVCLDDTTVKFEIW 60
Query: 88 DIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYAN 147
D GQ + Y+ I V D + + F + + E L + + + + N
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGN 119
Query: 148 KQDL 151
K DL
Sbjct: 120 KADL 123
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 30.9 bits (71), Expect = 0.12
Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 17/126 (13%)
Query: 37 KELRILLLGLDNAGKTTILKTLAS-EDISHITPTQG-FNIKSVQSEG--FKLNVWDIGGQ 92
+ R+ + G GK++++ PT + + + L + D G
Sbjct: 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS 61
Query: 93 ---RKIRPYWRNYFDNTD--ILIYVIDSADVKRFEESGFELHELLSDEKLT--GVPLLVY 145
++ R IL+Y I S + EE ++E + + K +P+++
Sbjct: 62 HQFPAMQ---RLSISKGHAFILVYSITSR--QSLEELK-PIYEQICEIKGDVESIPIMLV 115
Query: 146 ANKQDL 151
NK D
Sbjct: 116 GNKCDE 121
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 31.5 bits (71), Expect = 0.13
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 4 KQNSYERMEKENQVKDLALGLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDI 63
KQ + ++ N + + RI ++G + AGK+T++ L E
Sbjct: 667 KQKAIVKVT--NMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE-- 722
Query: 64 SHITPTQG 71
+ PT G
Sbjct: 723 --LLPTSG 728
Score = 29.2 bits (65), Expect = 0.62
Identities = 7/41 (17%), Positives = 19/41 (46%)
Query: 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSE 80
R + G + GK+T+++ +A+ + + V+ +
Sbjct: 463 RYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHD 503
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 30.7 bits (70), Expect = 0.15
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASE-DISHI 66
+ ++ + + R + LG +GK T L H+
Sbjct: 18 LKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL 58
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 30.2 bits (69), Expect = 0.18
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 34 SPEKELRILLLGLDNAGKTTILKTLASEDIS-HITPTQG--FNIKSVQSEG--FKLNVWD 88
S +EL++ LLG GK++I+ + +I PT G F K+VQ + K +WD
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 89 IGGQ---RKIRP-YWRN 101
G R + P Y+R
Sbjct: 62 TAGLERFRALAPMYYRG 78
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 30.4 bits (69), Expect = 0.21
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 100 RNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDLLG 153
R F D I V D + +E+ ++++ K +P +V NK D+LG
Sbjct: 108 RRVFYRADCGILVTD-SAPTPYED------DVVNLFKEMEIPFVVVVNKIDVLG 154
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 30.2 bits (68), Expect = 0.26
Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 24/144 (16%)
Query: 27 ILKKLRSSPEKELRILLLGLDNAGKTTILKTLASEDI----SHITPTQGFNIKSVQSEGF 82
+LK L + +++ G N GK+T+LK L + T T+G N+ + F
Sbjct: 156 VLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFT-TRGINVGQFEDGYF 214
Query: 83 KLNVWDIGGQRKIRPYWRNYFDN---------TDILIYVIDSADVKRFEESGFELHELLS 133
+ + D G RN + +++IY+ D + E GF L E +
Sbjct: 215 RYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPS-----EHCGFPLEEQIH 269
Query: 134 -----DEKLTGVPLLVYANKQDLL 152
+ +P LV NK D+
Sbjct: 270 LFEEVHGEFKDLPFLVVINKIDVA 293
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 29.7 bits (66), Expect = 0.29
Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 7/110 (6%)
Query: 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKL--NVWDIGGQRKIRP 97
+ L G GKTT++ + S P GF + V+ G ++ +V + G R P
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRG--P 60
Query: 98 YWRNYFDNTDILIYVID---SADVKRFEESGFELHELLSDEKLTGVPLLV 144
R + D+ FE+ + G + V
Sbjct: 61 LSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCV 110
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 29.4 bits (67), Expect = 0.31
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Query: 41 ILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQRK 94
++LLG GKT+++ + HIT T G F K + G L +WD GQ +
Sbjct: 9 VVLLGEGCVGKTSLVLRYCENKFNDKHIT-TLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 95 IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
Y+ +++ I V D D F++ + E L + L + NK DL
Sbjct: 68 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE-LRKMLGNEICLCIVGNKIDL 123
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 29.6 bits (67), Expect = 0.33
Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 17/129 (13%)
Query: 39 LRILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG------------F 82
+++L LG GKTT L + IT T G F K V
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFIT-TVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 83 KLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPL 142
L +WD GQ + R +F + + + D + F + +L ++ +
Sbjct: 85 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 144
Query: 143 LVYANKQDL 151
++ NK DL
Sbjct: 145 VLIGNKADL 153
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.45
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 22/47 (46%)
Query: 12 EKENQVKDLALGLLAILKKLRSSPEKELRILLLGLDNAG----KTTI 54
EK+ LKKL++S L+ L D+A K T+
Sbjct: 18 EKQA------------LKKLQAS----LK--LYADDSAPALAIKATM 46
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 29.4 bits (65), Expect = 0.45
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 24/93 (25%)
Query: 38 ELRILLLGLDNAGKTTILKTLASEDI----------SHITPTQGFNIKSVQSE----GFK 83
E ++++G GK+T++ +L D+ I T +V+ E +
Sbjct: 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLR 77
Query: 84 LNVWDIGGQ----------RKIRPYWRNYFDNT 106
L V D G + I Y F+
Sbjct: 78 LTVVDTPGYGDAINCRDCFKTIISYIDEQFERY 110
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 29.4 bits (65), Expect = 0.45
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 13/67 (19%)
Query: 38 ELRILLLGLDNAGKTTILKTLASEDI---------SHITPTQGFNIKSVQSEG----FKL 84
E ++++G GK+T++ +L D+ I T V + L
Sbjct: 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 67
Query: 85 NVWDIGG 91
+ D G
Sbjct: 68 TIVDTPG 74
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N-
acetylgalactosamine-specific component...; manxb PTS;
1.56A {Thermoanaerobacter tengcongensis}
Length = 187
Score = 29.0 bits (65), Expect = 0.54
Identities = 7/58 (12%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 74 IKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL 131
G K+ V+ + ++ + + + + + KR + G + L
Sbjct: 68 YTMAAPPGVKVKVFGV--DAALKEWSQKTSVEEKVFLLFKNIDTCKRVMDGGLPITTL 123
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 28.8 bits (64), Expect = 0.62
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 108 ILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
+L + + F++ + L + T P++V K D
Sbjct: 167 LLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDE 210
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 28.6 bits (64), Expect = 0.63
Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 3/104 (2%)
Query: 48 NAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKLNVWDIGGQRKIRPYWRNYFDNTD 107
N+ + D +++ T N + K ++WD GQ + Y+
Sbjct: 59 NSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGAT 118
Query: 108 ILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLLVYANKQDL 151
I V D ++ + + +++L + +LV ANK D
Sbjct: 119 CAIVVFDISNSNTLDRAKTWVNQLKISSNY--IIILV-ANKIDK 159
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 28.7 bits (65), Expect = 0.65
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 31 LRSSPEKELRILLLGLDNAGKTTILKTLASE-DISHI 66
+ +R++LLG AGK T + + I I
Sbjct: 1 MAHHHHHHMRLILLGAPGAGKGTQANFIKEKFGIPQI 37
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 28.7 bits (65), Expect = 0.74
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 13/52 (25%)
Query: 43 LLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSEGFKL-----NVWDI 89
L GL+ AGKTT+L L + T G +V G + +
Sbjct: 52 LYGLNGAGKTTLLNILNAY----EPATSG----TVNLFGKMPGKVGYSAETV 95
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 28.4 bits (64), Expect = 0.97
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 30 KLRSSPEKELRILLLGLDNAGKTTILKTLASE-DISHI 66
+S K LR ++LG +GK T+ + +A + H+
Sbjct: 19 YFQSMASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural
protein structure initiative, midwest center for
structural genomics; HET: MSE; 2.00A {Pseudomonas
aeruginosa PAO1}
Length = 500
Score = 28.4 bits (64), Expect = 0.99
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 1 MFQKQNSYERMEK---ENQVKDLALGLLAILKKLRSSPEKELRILLLGLDNAGKTTILKT 57
MF+ ++K E V +L LL +L+ + IL+ G++ AGK +K
Sbjct: 3 MFESAEVGHSIDKDTYEKAVIELREALLEAQFELKQQARFPVIILINGIEGAGKGETVKL 62
Query: 58 L 58
L
Sbjct: 63 L 63
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 28.3 bits (64), Expect = 1.1
Identities = 7/35 (20%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 33 SSPEKELRILLLGLDNAGKTTILKTLASE-DISHI 66
+ + LR +++G +GK T+ + + ++ H+
Sbjct: 2 GASARLLRAVIMGAPGSGKGTVSSRITTHFELKHL 36
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 27.9 bits (63), Expect = 1.3
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 33 SSPEKELRILLLGLDNAGKTTILKTLASE-DISHI 66
K +R +LLG AGK T LA + H+
Sbjct: 11 PESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHL 45
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, blood
clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Length = 464
Score = 28.0 bits (62), Expect = 1.5
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 19 DLALGLLAILKKLRSSPEKELRILLL--GLDNAGKTTILKTLASEDISHIT 67
+ L + ++P +LL G D + L I + T
Sbjct: 161 AMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESETPADLARAIQSSIGNFT 211
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 28.0 bits (62), Expect = 1.5
Identities = 8/41 (19%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 22 LGLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62
+G+ +++ + E + ++G N GK+T + + E
Sbjct: 147 IGMAKVMEAINRYREGG-DVYVVGCTNVGKSTFINRIIEEA 186
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 27.7 bits (61), Expect = 1.5
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 39 LRILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSE------GFKLNVWDIGGQ 92
++I++ G GKTT++K + GF + V+ GF++ + +
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVERLGKRA---IGFWTEEVRDPETKKRTGFRIITTEGKKK 57
Query: 93 RKIR 96
Sbjct: 58 IFSS 61
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 27.7 bits (62), Expect = 1.6
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 15 NQVKDLALGLLAILK---KLRSSPEKELRILLLGLDNAGKTTILKTLA 59
NQ+ + +L + + + +R L++G+ N GK+T++ LA
Sbjct: 94 NQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLA 141
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 27.8 bits (62), Expect = 1.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 41 ILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKS 76
ILL G GKT I + +A+E + G I S
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 27.7 bits (62), Expect = 1.7
Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 41 ILLLGLDNAGKTTILKTLA------------SEDISHITPTQGFNIKSVQSEGFKLNVWD 88
+++LG + +GKTT+L+ ++ ++ I ++ ++ + V D
Sbjct: 33 VIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVND 92
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 27.4 bits (62), Expect = 1.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 43 LLGLDNAGKTTILKTLA 59
L+G + AGKTT L +A
Sbjct: 37 LIGANGAGKTTTLSAIA 53
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 27.6 bits (62), Expect = 1.9
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 23 GLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLA 59
+LKKL S ++ R+L++G+ N GK+TI+ L
Sbjct: 86 PRKVLLKKL--SFDRLARVLIVGVPNTGKSTIINKLK 120
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 27.6 bits (60), Expect = 2.2
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 3 QKQNSYERMEKENQVKDLALGLLAILKKLRSSPEK----ELRILLLGLDNAGKTTILKTL 58
+ + + E L L ++ + + + R+L+LG GK+T L L
Sbjct: 30 KLAETINKAELAGDSSSGKLSLERDIEDITIASKNLQQGVFRLLVLGDMKRGKSTFLNAL 89
Query: 59 ASEDI--SHITPT 69
E++ S + P
Sbjct: 90 IGENLLPSDVNPC 102
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 27.1 bits (61), Expect = 2.2
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 36 EKELRILLLGLDNAGKTTILKTLASE-DISHI 66
K+ ++L+G +GK T + + E ++H+
Sbjct: 3 SKKHNLILIGAPGSGKGTQCEFIKKEYGLAHL 34
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 27.1 bits (61), Expect = 2.2
Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 12/119 (10%)
Query: 41 ILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEG--FKLNVWDIGGQRK 94
++LLG AGK++++ + T G F +++ K +WD GQ +
Sbjct: 15 LVLLGDVGAGKSSLVLRFVKDQFVEFQE-STIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 95 IRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHEL--LSDEKLTGVPLLVYANKQDL 151
Y+ I V D + FE + + EL + + V L NK DL
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNM--VMALA-GNKSDL 129
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase,
shikimat ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 27.4 bits (61), Expect = 2.3
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 5 QNSYERMEKENQVKDLALGLLAILKKLRSSPEKELR---ILLLGLDNAGKTTILKTLASE 61
+NS +E + + ILKK + L + L+G+ +GKTT+ K +A
Sbjct: 12 KNSSALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 27.0 bits (59), Expect = 2.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 41 ILLLGLDNAGKTTILKTLASE 61
I+L G +AGK+ I++ L S
Sbjct: 6 IILNGGSSAGKSGIVRCLQSV 26
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 27.1 bits (59), Expect = 3.3
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 13/67 (19%)
Query: 38 ELRILLLGLDNAGKTTILKTL---------ASEDISHITPTQGFNIKSVQSEG----FKL 84
E ++++G GK+T++ +L I T V + L
Sbjct: 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 90
Query: 85 NVWDIGG 91
+ D G
Sbjct: 91 TIVDTPG 97
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 26.7 bits (60), Expect = 3.6
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 36 EKELRILLLGLDNAGKTTILKTLASE-DISHI 66
+ +R++L+G AGK T L +H+
Sbjct: 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHL 33
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 26.7 bits (58), Expect = 3.8
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 24/93 (25%)
Query: 38 ELRILLLGLDNAGKTTILKTLASEDI----------SHITPTQGFNIKSVQSEGF----K 83
E ++++G GK+T++ +L D+ I T +V+ E +
Sbjct: 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLR 96
Query: 84 LNVWDIGGQ----------RKIRPYWRNYFDNT 106
L V D G + I Y F+
Sbjct: 97 LTVVDTPGYGDAINCRDCFKTIISYIDEQFERY 129
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 26.6 bits (58), Expect = 4.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 41 ILLLGLDNAGKTTILKTLASE 61
+LL G +GK+TI + LA+
Sbjct: 12 LLLSGHPGSGKSTIAEALANL 32
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 26.7 bits (58), Expect = 4.1
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 41 ILLLGLDNAGKTTILKTLASEDISH----ITP-TQGFNI 74
+L+ G + GKT+ ++ L +++ P T F
Sbjct: 68 VLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVA 106
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 26.5 bits (58), Expect = 4.2
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 24 LLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASED 62
L ++ R + ++G N GK+T + + E
Sbjct: 150 LADAIEYYR----GGKDVYVVGCTNVGKSTFINRMIKEF 184
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 26.4 bits (59), Expect = 4.3
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 4/22 (18%)
Query: 38 ELRIL----LLGLDNAGKTTIL 55
EL++L L+G + GK+T+L
Sbjct: 154 ELKVLADVGLVGFPSVGKSTLL 175
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding,
signal recognition particle, GTP-binding, RNA-binding;
2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Length = 432
Score = 26.7 bits (60), Expect = 4.3
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 29 KKLRSSPEKELRILLLGLDNAGKTT 53
KKL +P+K+ ILL+G+ +GKTT
Sbjct: 90 KKLELNPKKQNVILLVGIQGSGKTT 114
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 26.4 bits (59), Expect = 4.3
Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 17/128 (13%)
Query: 40 RILLLGLDNAGKTTILKTLASE--DISHITPTQG--FNIKSVQSEGF------------K 83
+ L LG GKT++L + IT T G F K V
Sbjct: 13 KFLALGDSGVGKTSVLYQYTDGKFNSKFIT-TVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 84 LNVWDIGGQRKIRPYWRNYFDNTDILIYVIDSADVKRFEESGFELHELLSDEKLTGVPLL 143
L +WD G + R +F + + + D + + F + +L ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131
Query: 144 VYANKQDL 151
+ NK DL
Sbjct: 132 LCGNKSDL 139
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 25.8 bits (57), Expect = 5.5
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 26 AILKKLRSSPEKELRILLLGLDNAGKTTILKTLASE 61
+L++L + L G +GK+T+ LA+
Sbjct: 10 GVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 26.0 bits (58), Expect = 5.7
Identities = 7/34 (20%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 34 SPEKELRILLLGLDNAGKTTILKTLASE-DISHI 66
+ L++++ G +GK T + + ++ ++HI
Sbjct: 1 ALADPLKVMISGAPASGKGTQCELIKTKYQLAHI 34
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 26.4 bits (59), Expect = 5.7
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 4/22 (18%)
Query: 38 ELRIL----LLGLDNAGKTTIL 55
EL ++ L+G NAGK+++L
Sbjct: 153 ELMLIADVGLVGYPNAGKSSLL 174
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP,
transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP:
c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A*
1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A*
1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
1e9f_A*
Length = 215
Score = 26.0 bits (58), Expect = 6.0
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 45 GLDNAGKTTILKTLA 59
G+D AGK+T + L
Sbjct: 16 GVDRAGKSTQSRKLV 30
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 25.8 bits (56), Expect = 6.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 40 RILLLGLDNAGKTTILKTLASE-DISHITPTQ 70
ILL G GKTT+ K LAS+ + +I
Sbjct: 13 NILLTGTPGVGKTTLGKELASKSGLKYINVGD 44
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Length = 325
Score = 26.0 bits (58), Expect = 6.5
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 13/42 (30%)
Query: 45 GLDNAGKTTILKTLA-----------SEDISHITPTQGFNIK 75
GLD A K+ IL + + N +
Sbjct: 211 GLDAARKSVILVNHIFGTEYTLNDVEYSGVDERSY--NANDR 250
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A*
1tmk_A*
Length = 216
Score = 25.7 bits (57), Expect = 7.0
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 45 GLDNAGKTTILKTLA 59
GLD GKTT L
Sbjct: 12 GLDRTGKTTQCNILY 26
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 25.5 bits (57), Expect = 7.0
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 7/34 (20%)
Query: 41 ILLLGLDNAGKTTILKTLASED-------ISHIT 67
++LLG G+ I TL ++ I H T
Sbjct: 8 LVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTT 41
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins,
cell membrane, ION transport, transmembrane; HET: GNP;
1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A*
2wjh_A*
Length = 165
Score = 25.5 bits (57), Expect = 7.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 37 KELRILLLGLDNAGKTTI 54
K I L+G N GK+TI
Sbjct: 2 KSYEIALIGNPNVGKSTI 19
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 25.4 bits (56), Expect = 8.4
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 11 MEKENQVKDLALGLLAILKKLRSSPEKELRILLLGLDNAGKTTILKTLASE 61
ME +++ L +LAI R L + + GL +GKTT+ L+
Sbjct: 1 MELRDRIDFLCKTILAIKTAGR------LVLGIDGLSRSGKTTLANQLSQT 45
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L*
1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q*
1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P*
3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Length = 134
Score = 25.2 bits (56), Expect = 8.6
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 7/35 (20%)
Query: 3 QKQNSYERMEKENQVKDLALGLLAILKKLRSSPEK 37
K+ ++++ A+ K +R SP K
Sbjct: 10 NKKQRKQQVKLRKPGF-------AVAKYVRMSPRK 37
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 25.3 bits (55), Expect = 8.7
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 40 RILLLGLDNAGKTTILKTLASE-DISHI 66
++ G GK+T K LA++ D S
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAY 31
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis,
ATP-binding, nucleotide-binding, poxvirus, transferase;
HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB:
2w0s_A*
Length = 204
Score = 25.3 bits (56), Expect = 8.7
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 45 GLDNAGKTTILKTLA 59
GLD +GKTT +
Sbjct: 11 GLDKSGKTTQCMNIM 25
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport,
transmembrane; HET: GDP; 2.20A {Methanocaldococcus
jannaschii}
Length = 188
Score = 25.2 bits (56), Expect = 8.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 37 KELRILLLGLDNAGKTTI 54
K I L+G N GK+TI
Sbjct: 6 KSYEIALIGNPNVGKSTI 23
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 25.2 bits (56), Expect = 8.8
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 7/34 (20%)
Query: 41 ILLLGLDNAGKTTILKTLASED-------ISHIT 67
++L+G G++ I L S++ + + T
Sbjct: 22 LVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTT 55
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 25.4 bits (55), Expect = 9.2
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 40 RILLLGLDNAGKTTILKTLASEDISHITPTQGFNIKSVQSE 80
+++ G+ G TT + + + SV E
Sbjct: 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFE 45
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION
transport, membrane; 1.80A {Escherichia coli} PDB:
3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 25.4 bits (56), Expect = 9.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 37 KELRILLLGLDNAGKTTI 54
K+L I L+G N+GKTT+
Sbjct: 2 KKLTIGLIGNPNSGKTTL 19
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding,
ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE
PG4; 1.60A {Sulfolobus tokodaii}
Length = 213
Score = 25.3 bits (56), Expect = 9.3
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 45 GLDNAGKTTILKTLAS 60
G+D +GK++ L
Sbjct: 11 GIDGSGKSSQATLLKD 26
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 25.1 bits (56), Expect = 9.4
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 6/25 (24%)
Query: 49 AGKTTILKTLASED------ISHIT 67
AGKT++++ L ISH T
Sbjct: 18 AGKTSLVRALVKALAEIKISISHTT 42
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP;
1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A*
2wwi_A*
Length = 212
Score = 25.2 bits (56), Expect = 9.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 45 GLDNAGKTTILKTLA 59
GLD +GK+T K L
Sbjct: 17 GLDRSGKSTQSKLLV 31
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 25.2 bits (56), Expect = 9.7
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 11 MEKENQVKDLAL---GLLAILKKLR-SSPEKELRILLLGLDNAGKTTILKTLA 59
M K V++L + ++L + ++ + +LG + GK+T+L L
Sbjct: 1 MNKALSVENLGFYYQAENFLFQQLNFDLNKGDI-LAVLGQNGCGKSTLLDLLL 52
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP
phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium
tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A*
1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A*
1w2h_A*
Length = 214
Score = 25.4 bits (56), Expect = 9.9
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 45 GLDNAGKTTILKTLA 59
G+D AGK T+++ L+
Sbjct: 7 GVDGAGKRTLVEKLS 21
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.137 0.389
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,394,488
Number of extensions: 136084
Number of successful extensions: 717
Number of sequences better than 10.0: 1
Number of HSP's gapped: 664
Number of HSP's successfully gapped: 226
Length of query: 162
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,300,587
Effective search space: 326844612
Effective search space used: 326844612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.6 bits)