BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6890
(116 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 79.3 bits (194), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 10 LLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVN 69
L E+KAT+++ +V F++ W PFF+ +++ + C C + P ++ TWLGY +S +N
Sbjct: 394 LREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCH--VSPELYSATTWLGYVNSALN 451
Query: 70 PIFYTIFNKVFRTAFKKVLLC 90
P+ YT FN FR AF K+L C
Sbjct: 452 PVIYTTFNIEFRKAFLKILSC 472
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 9 LLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMV 68
L+ E+KA + L + F+I W P+ I+ L+ + C C K + + + WL Y +S V
Sbjct: 366 LIKEKKAAQTLSAILLAFIITWTPYNIMVLVNTFCDSCIPKTY---WNLGYWLCYINSTV 422
Query: 69 NPIFYTIFNKVFRTAFKKVLLCR 91
NP+ Y + NK FRT FK +LLC+
Sbjct: 423 NPVCYALCNKTFRTTFKTLLLCQ 445
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPI 71
E+K T+ + + F+I WAP+ ++ LI + C+PC I ++ + WL Y +S +NP
Sbjct: 383 EKKVTRTILAILLAFIITWAPYNVMVLINTFCAPC---IPNTVWTIGYWLCYINSTINPA 439
Query: 72 FYTIFNKVFRTAFKKVLLCRY 92
Y + N F+ FK +L+C Y
Sbjct: 440 CYALCNATFKKTFKHLLMCHY 460
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 60.5 bits (145), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 2 LTRHGRILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWL 61
L R + L E KA K LG++ TF + W PFFI+N++ I + I ++ + W+
Sbjct: 407 LRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI---QDNLIRKEVYILLNWI 463
Query: 62 GYASSMVNPIFYTIFNKVFRTAFKKVLLCR 91
GY +S NP+ Y + FR AF+++L R
Sbjct: 464 GYVNSGFNPLIYC-RSPDFRIAFQELLCLR 492
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPI 71
E+KA K LG + F++ W P+FI ++ + C C + H +F + WLGY +S +NP+
Sbjct: 368 ERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCNE-HLHMFTI--WLGYINSTLNPL 424
Query: 72 FYTIFNKVFRTAFKKVLLCRYCGEK 96
Y + N+ F+ FK++L R GE
Sbjct: 425 IYPLCNENFKKTFKRILHIR-SGEN 448
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 57.0 bits (136), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 7 RILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASS 66
+ L E KA K LG++ TF + W PFFI+N++ I + I ++ + W+GY +S
Sbjct: 399 KFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI---QDNLIRKEVYILLNWIGYVNS 455
Query: 67 MVNPIFYTIFNKVFRTAFKKVLLCR 91
NP+ Y + FR AF+++L R
Sbjct: 456 GFNPLIYC-RSPDFRIAFQELLCLR 479
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 57.0 bits (136), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 7 RILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASS 66
+ L E KA K LG++ TF + W PFFI+N++ I + I ++ + W+GY +S
Sbjct: 398 KFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI---QDNLIRKEVYILLNWIGYVNS 454
Query: 67 MVNPIFYTIFNKVFRTAFKKVLLCR 91
NP+ Y + FR AF+++L R
Sbjct: 455 GFNPLIYC-RSPDFRIAFQELLCLR 478
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 56.6 bits (135), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 7 RILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASS 66
+ L E KA K LG++ TF + W PFFI+N++ I + I ++ + W+GY +S
Sbjct: 399 KFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI---QDNLIRKEVYILLNWIGYVNS 455
Query: 67 MVNPIFYTIFNKVFRTAFKKVLLCR 91
NP+ Y + FR AF+++L R
Sbjct: 456 GFNPLIYC-RSPDFRIAFQELLCLR 479
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 2 LTRHGRILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWL 61
L R + L E KA K LG++ TF + W PFFI+N++ I + I ++ + W+
Sbjct: 258 LRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI---QDNLIRKEVYILLNWI 314
Query: 62 GYASSMVNPIFYTIFNKVFRTAFKKVLLCR 91
GY +S NP+ Y + FR AF+++L R
Sbjct: 315 GYVNSGFNPLIYC-RSPDFRIAFQELLCLR 343
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 2 LTRHGRILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWL 61
L R + L E KA K LG++ TF + W PFFI+N++ I + I ++ + W+
Sbjct: 259 LRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI---QDNLIRKEVYILLNWI 315
Query: 62 GYASSMVNPIFYTIFNKVFRTAFKKVLLCR 91
GY +S NP+ Y + FR AF+++L R
Sbjct: 316 GYVNSGFNPLIYC-RSPDFRIAFQELLCLR 344
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 2 LTRHGRILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWL 61
L R + L E KA K LG++ TF + W PFFI+N++ I + I ++ + W+
Sbjct: 235 LRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI---QDNLIRKEVYILLNWI 291
Query: 62 GYASSMVNPIFYTIFNKVFRTAFKKVLLCR 91
GY +S NP+ Y + FR AF+++L R
Sbjct: 292 GYVNSGFNPLIYC-RSPDFRIAFQELLCLR 320
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 3 TRHGRILLL-EQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPG-IFEVATW 60
++ R++L+ E KA K LG++ F + W PFF++N++ + P +F W
Sbjct: 215 SKRKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVF----NRDLVPDWLFVAFNW 270
Query: 61 LGYASSMVNPIFYTIFNKVFRTAFKKVL 88
LGYA+S +NPI Y + FR AFK++L
Sbjct: 271 LGYANSAMNPIIYC-RSPDFRKAFKRLL 297
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 10 LLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVN 69
L E KA K LG++ TF + W PFFI+N++ I + I ++ + W+GY +S N
Sbjct: 370 LKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI---QDNLIRKEVYILLNWIGYVNSGFN 426
Query: 70 PIFYTIFNKVFRTAFKKVLLCR 91
P+ Y + FR AF+++L R
Sbjct: 427 PLIYC-RSPDFRIAFQELLCLR 447
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 2 LTRHGRILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWL 61
L + + L E KA K LG++ TF + W PFFI+N++ I + I ++ + W+
Sbjct: 202 LQKIDKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI---QDNLIRKEVYILLNWI 258
Query: 62 GYASSMVNPIFYTIFNKVFRTAFKKVLLCR 91
GY +S NP+ Y + FR AF+++L R
Sbjct: 259 GYVNSGFNPLIYC-RSPDFRIAFQELLCLR 287
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 4 RHGRILLL-EQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPG-IFEVATWL 61
+ R++L+ E KA K LG++ F + W PFF++N++ + P +F WL
Sbjct: 218 KTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVF----NRDLVPDWLFVAFNWL 273
Query: 62 GYASSMVNPIFYTIFNKVFRTAFKKVL 88
GYA+S +NPI Y + FR AFK++L
Sbjct: 274 GYANSAMNPIIYC-RSPDFRKAFKRLL 299
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 22 VFFTFVILWAPFFILNLIPSICSPCETKIHPGIFE-------VATWLGYASSMVNPIFYT 74
V FV+ W P+ + L+ C + + +F+ + L YASS +NPI Y
Sbjct: 414 VVIAFVVCWLPYHVRRLM--FCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYN 471
Query: 75 IFNKVFRTAFKKVLLCRYCGEKNRRR 100
+ + FR F L C G ++RR+
Sbjct: 472 LVSANFRQVFLSTLACLCPGWRHRRK 497
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 2 LTRHGRILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWL 61
L R L E A K L ++ F + W P I+N C C + + +A L
Sbjct: 339 LERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC-SHAPLWLMYLAIVL 397
Query: 62 GYASSMVNPIFYTIFNKVFRTAFKKVL 88
+ +S+VNP Y + FR F+K++
Sbjct: 398 SHTNSVVNPFIYAYRIREFRQTFRKII 424
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 25 TFVILWAPFFILNLIPSICSPCE-TKIHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTA 83
TF I W PF I L+P I K ++ WL +S+M NPI Y N FR
Sbjct: 256 TFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLG 315
Query: 84 FKKVLLC 90
FK C
Sbjct: 316 FKHAFRC 322
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPI 71
E A K L ++ F + W P I+N C C + + +A L + +S+VNP
Sbjct: 390 EVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC-SHAPLWLMYLAIVLSHTNSVVNPF 448
Query: 72 FYTIFNKVFRTAFKKVL 88
Y + FR F+K++
Sbjct: 449 IYAYRIREFRQTFRKII 465
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 17 KVLGVVFFTFVILWAPFFILNLIPSICS--PCETKIHPGIFEVATWLGYASSMVNPIFYT 74
K + +V F+ WAP FIL L+ C C+ F V L +S NPI YT
Sbjct: 421 KTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLV---LAVLNSGTNPIIYT 477
Query: 75 IFNKVFRTAFKKVL 88
+ NK R AF +++
Sbjct: 478 LTNKEMRRAFIRIM 491
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPI 71
E A K L ++ F + W P I+N C C + + +A L + +S+VNP
Sbjct: 228 EVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC-SHAPLWLMYLAIVLSHTNSVVNPF 286
Query: 72 FYTIFNKVFRTAFKKVL 88
Y + FR F+K++
Sbjct: 287 IYAYRIREFRQTFRKII 303
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPI 71
E A K L ++ F + W P I+N C C + + +A L + +S+VNP
Sbjct: 228 EVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC-SHAPLWLMYLAIVLSHTNSVVNPF 286
Query: 72 FYTIFNKVFRTAFKKVL 88
Y + FR F+K++
Sbjct: 287 IYAYRIREFRQTFRKII 303
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFILNLIPS------ICSPCETKIHPG-IFEVATWLGYA 64
+ +A +V+ V F++ W P+ ++ L + I CE + + G + LG+
Sbjct: 209 KHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFL 268
Query: 65 SSMVNPIFYTIFNKVFRTAFKKVL 88
S +NPI Y + FR F K+L
Sbjct: 269 HSCLNPIIYAFIGQNFRHGFLKIL 292
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 30 WAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTAFKK 86
W P + L + ++ I T LGY +S +NPI Y ++ F+ F+K
Sbjct: 350 WTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRK 406
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPI 71
E A K ++ F + W P I+N C C + + +A L + +S+VNP
Sbjct: 228 EVHAAKSAAIIAGLFALCWLPLHIINCFTFFCPDC-SHAPLWLMYLAIVLAHTNSVVNPF 286
Query: 72 FYTIFNKVFRTAFKKVL 88
Y + FR F+K++
Sbjct: 287 IYAYRIREFRQTFRKII 303
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 33.1 bits (74), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 30 WAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTAFKK 86
W P I L+ ++ S + + LGY +S +NPI Y ++ F+ F+
Sbjct: 409 WTPIHIFILVEALGSTSHSTAALSSYYFCIALGYTNSSLNPILYAFLDENFKRCFRD 465
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 61 LGYASSMVNPIFYTIFNKVFRTAFKKVLLCRY-CGEKN 97
LGYA+S +NP+ Y ++ F+ F++ LCR CG +
Sbjct: 425 LGYANSSLNPVLYAFLDENFKRCFRQ--LCRTPCGRQE 460
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 30 WAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTAFKK 86
W P I +I ++ + ET + LGY +S +NP+ Y ++ F+ F++
Sbjct: 396 WTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFRE 452
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPI 71
E++ T+++ ++ F+I W P+ + I + + P + + S++ NP+
Sbjct: 248 EKEVTRMVIIMVIAFLICWLPY--AGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPV 305
Query: 72 FYTIFNKVFRTAFKKVLLC 90
Y + NK FR L C
Sbjct: 306 IYIMMNKQFRNCMVTTLCC 324
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPI 71
E++ T+++ ++ F+I W P+ + I + + P + + S++ NP+
Sbjct: 247 EKEVTRMVIIMVIAFLICWLPY--AGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPV 304
Query: 72 FYTIFNKVFRTAFKKVLLC 90
Y + NK FR L C
Sbjct: 305 IYIMMNKQFRNCMVTTLCC 323
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 30.8 bits (68), Expect = 0.17, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFI---------LNLIPSICSPCETKIHPGIFEVATWLG 62
++KA K ++ F W P++I L +I C E +H I + L
Sbjct: 408 KRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCE-FENTVHKWI-SITEALA 465
Query: 63 YASSMVNPIFYTIFNKVFRTAFKKVLLCRYCGEKNR 98
+ +NPI Y F+T+ + L G R
Sbjct: 466 FFHCCLNPILYAFLGAKFKTSAQHALTSVSRGSSGR 501
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFI---------LNLIPSICSPCETKIHPGIFEVATWLG 62
++KA K ++ F W P++I L +I C E +H I + L
Sbjct: 408 KRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCE-FENTVHKWI-SITEALA 465
Query: 63 YASSMVNPIFYTIFNKVFRTAFKKVL 88
+ +NPI Y F+T+ + L
Sbjct: 466 FFHCCLNPILYAFLGAKFKTSAQHAL 491
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPI 71
E++ T+++ ++ F+I W P+ + I + + P + + S++ NP+
Sbjct: 248 EKEVTRMVIIMVIAFLICWLPY--AGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPV 305
Query: 72 FYTIFNKVFRTAFKKVLLC 90
Y + NK FR L C
Sbjct: 306 IYIMMNKQFRNCMVTTLCC 324
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPI 71
E++ T+++ ++ F+I W P+ + I + + P + + S++ NP+
Sbjct: 248 EKEVTRMVIIMVIAFLICWLPY--AGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPV 305
Query: 72 FYTIFNKVFRTAFKKVLLC 90
Y + NK FR L C
Sbjct: 306 IYIMMNKQFRNCMVTTLCC 324
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPI 71
E++ T+++ ++ F+I W P+ + I + + P + + S++ NP+
Sbjct: 247 EKEVTRMVIIMVIAFLICWLPY--AGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPV 304
Query: 72 FYTIFNKVFRTAFKKVLLC 90
Y + NK FR L C
Sbjct: 305 IYIMMNKQFRNCMVTTLCC 323
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 29.6 bits (65), Expect = 0.45, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFI---------LNLIPSICSPCETKIHPGIFEVATWLG 62
++KA K ++ F W P++I L +I C E +H I + L
Sbjct: 405 KRKALKPTVILILAFFACWLPYYIGISIDSFILLEIIKQGCE-FENTVHKWI-SITEALA 462
Query: 63 YASSMVNPIFYTIFNKVFRTAFKKVL 88
+ +NPI Y F+T+ + L
Sbjct: 463 FFHCCLNPILYAFLGAKFKTSAQHAL 488
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPI 71
E + K+ V+ F++ W+P+ ++ L+ P E + P ++ AS++ NP+
Sbjct: 255 EMRLAKISIVIVSQFLLSWSPYAVVALLAQF-GPLEW-VTPYAAQLPVMFAKASAIHNPM 312
Query: 72 FYTIFNKVFRTAFKK----VLLC 90
Y++ + FR A + VL C
Sbjct: 313 IYSVSHPKFREAISQTFPWVLTC 335
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPI 71
E + K+ V+ F++ W+P+ ++ L+ P E + P ++ AS++ NP+
Sbjct: 256 EMRLAKISIVIVSQFLLSWSPYAVVALLAQF-GPLEW-VTPYAAQLPVMFAKASAIHNPM 313
Query: 72 FYTIFNKVFRTAFKK----VLLC 90
Y++ + FR A + VL C
Sbjct: 314 IYSVSHPKFREAISQTFPWVLTC 336
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPI 71
E++ T+++ + F+I W P+ + I + + P + + S++ NP+
Sbjct: 248 EKEVTRMVIIYVIAFLICWLPY--AGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPV 305
Query: 72 FYTIFNKVFRTAFKKVLLC 90
Y + NK FR L C
Sbjct: 306 IYIMMNKQFRNCMVTTLCC 324
>pdb|2KOE|A Chain A, Human Cannabinoid Receptor 1 - Helix 78 PEPTIDE
Length = 40
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 54 IFEVATWLGYASSMVNPIFYTIFNKVFRTAFKKV 87
+F A+ L +S VNPI Y + +K R AF+ +
Sbjct: 2 VFAFASMLCLLNSTVNPIIYALRSKDLRHAFRSM 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.143 0.476
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,390,502
Number of Sequences: 62578
Number of extensions: 113059
Number of successful extensions: 268
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 40
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)