Query psy6890
Match_columns 116
No_of_seqs 118 out of 1114
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 21:06:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4grv_A Neurotensin receptor ty 99.9 5.5E-26 1.9E-30 162.4 5.8 92 7-98 399-495 (510)
2 2rh1_A Beta-2-adrenergic recep 99.9 1.8E-22 6.1E-27 143.8 10.0 80 10-93 401-480 (500)
3 3eml_A Human adenosine A2A rec 99.9 1.4E-21 4.8E-26 137.5 11.4 91 7-98 385-475 (488)
4 3vw7_A Proteinase-activated re 99.9 2.4E-22 8.1E-27 141.6 7.0 90 8-97 381-472 (484)
5 4eiy_A Adenosine receptor A2A/ 99.9 1.5E-21 5.2E-26 136.2 11.0 91 7-98 344-434 (447)
6 3v2y_A Sphingosine 1-phosphate 99.9 6.5E-22 2.2E-26 141.6 7.0 87 9-96 413-499 (520)
7 4dkl_A MU-type opioid receptor 99.8 4.9E-21 1.7E-25 134.1 10.3 83 7-89 373-455 (464)
8 2lnl_A C-X-C chemokine recepto 99.8 8.7E-21 3E-25 126.7 9.7 86 6-91 203-295 (296)
9 1u19_A Rhodopsin; G protein-co 99.8 4.7E-20 1.6E-24 125.0 13.0 85 7-93 243-327 (349)
10 2ks9_A Substance-P receptor; w 99.8 8.1E-20 2.8E-24 124.8 13.5 85 8-92 239-324 (364)
11 3pbl_A D(3) dopamine receptor, 99.8 1.6E-20 5.3E-25 132.3 9.9 81 10-92 394-474 (481)
12 3uon_A Human M2 muscarinic ace 99.8 1.1E-20 3.7E-25 132.5 8.2 82 10-94 381-462 (467)
13 3rze_A Histamine H1 receptor, 99.8 2.6E-20 8.8E-25 130.2 9.2 83 8-93 364-446 (452)
14 4amj_A Beta-1 adrenergic recep 99.8 3.1E-19 1.1E-23 119.2 10.4 81 9-93 224-304 (315)
15 4ea3_A Fusion protein of nocic 99.8 2.5E-19 8.6E-24 125.5 9.7 88 6-93 326-413 (434)
16 3odu_A C-X-C chemokine recepto 99.8 2.7E-20 9.2E-25 131.6 4.1 87 7-93 403-496 (502)
17 3sn6_R Lysozyme, beta-2 adrene 99.8 7.4E-19 2.5E-23 125.4 8.8 80 10-93 415-494 (514)
18 2z73_A Rhodopsin; visual pigme 99.8 2.9E-18 9.9E-23 120.3 8.3 79 10-90 254-332 (448)
19 2koe_A Human cannabinoid recep 99.3 4.2E-13 1.4E-17 64.6 0.7 37 54-90 2-38 (40)
20 2ki9_A Cannabinoid receptor 2; 98.9 2.9E-11 9.8E-16 55.7 -1.7 31 12-42 1-31 (33)
21 4ea3_A Fusion protein of nocic 88.6 4.4 0.00015 27.8 9.0 90 9-99 326-415 (434)
22 4eiy_A Adenosine receptor A2A/ 81.0 11 0.00036 25.7 8.2 38 61-98 393-430 (447)
23 3eml_A Human adenosine A2A rec 79.1 13 0.00044 25.5 8.1 40 58-97 431-470 (488)
24 1u19_A Rhodopsin; G protein-co 70.2 20 0.00067 23.3 7.3 37 62-98 292-328 (349)
25 2ket_A Cathelicidin-6; antimic 69.7 4.2 0.00014 16.4 1.9 14 78-91 4-17 (27)
26 3sn6_R Lysozyme, beta-2 adrene 63.2 12 0.0004 26.4 4.6 41 58-99 456-496 (514)
27 2ks9_A Substance-P receptor; w 62.2 30 0.001 22.7 8.6 31 64-94 292-322 (364)
28 3v2y_A Sphingosine 1-phosphate 55.8 16 0.00055 25.8 4.3 38 62-99 461-498 (520)
29 4amj_A Beta-1 adrenergic recep 52.7 33 0.0011 21.7 5.1 37 60-97 268-304 (315)
30 4dkl_A MU-type opioid receptor 47.1 64 0.0022 21.8 6.8 82 13-95 376-457 (464)
31 3noh_A Putative peptide bindin 43.4 7 0.00024 22.7 0.6 22 67-88 26-47 (139)
32 2z73_A Rhodopsin; visual pigme 37.8 57 0.002 22.2 4.7 22 68-89 306-327 (448)
33 3vw7_A Proteinase-activated re 33.2 59 0.002 22.2 4.2 85 16-100 386-471 (484)
34 2v1n_A KIN17, protein KIN homo 24.6 49 0.0017 18.8 2.0 20 76-95 19-38 (111)
35 3eyi_A Z-DNA-binding protein 1 22.6 26 0.00088 18.2 0.6 24 55-78 28-52 (72)
36 3pbl_A D(3) dopamine receptor, 22.4 1.9E+02 0.0064 19.6 5.8 81 14-97 395-475 (481)
37 4b4a_A TATC, SEC-independent p 22.3 81 0.0028 20.5 3.0 23 10-32 9-31 (249)
38 1skh_A Major prion protein 2; 21.8 59 0.002 13.8 1.5 14 29-42 8-21 (30)
39 1s6c_B Potassium voltage-gated 21.5 43 0.0015 14.3 1.1 9 25-33 3-11 (30)
40 1btq_A BAND 3 anion transport 20.6 54 0.0019 13.4 1.3 17 19-35 3-19 (26)
41 1bzk_A Protein (BAND 3 anion t 20.6 69 0.0023 14.8 1.8 19 16-34 16-34 (43)
No 1
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=99.92 E-value=5.5e-26 Score=162.43 Aligned_cols=92 Identities=26% Similarity=0.431 Sum_probs=65.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCc-----chHHHHHHHHHHHHhhhhhhHHHHHhccHHHH
Q psy6890 7 RILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETK-----IHPGIFEVATWLGYASSMVNPIFYTIFNKVFR 81 (116)
Q Consensus 7 ~~~~~~~k~~k~~~~iv~~f~i~~~P~~v~~l~~~~~~~~~~~-----~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr 81 (116)
...++|+|++||+++|+++|++||+||+++.++..+.+..... ....++.++.+|+|+|||+||+||+++|++||
T Consensus 399 ~~~~~erk~~k~L~iVv~~F~iCWlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR 478 (510)
T 4grv_A 399 GSVQALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFR 478 (510)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 3456789999999999999999999999999998876532221 23446778999999999999999999999999
Q ss_pred HHHHHhHhhhhcCCcCc
Q psy6890 82 TAFKKVLLCRYCGEKNR 98 (116)
Q Consensus 82 ~~~~~~~~~~~~~~~~~ 98 (116)
++++++++|+|...+.+
T Consensus 479 ~aFk~iL~C~C~~~r~R 495 (510)
T 4grv_A 479 QVFLSTLACLCPGWRHR 495 (510)
T ss_dssp CC---------------
T ss_pred HHHHHHHhhcCCCCCCC
Confidence 99999998765444333
No 2
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=99.88 E-value=1.8e-22 Score=143.76 Aligned_cols=80 Identities=38% Similarity=0.720 Sum_probs=68.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCcchHHHHHHHHHHHHhhhhhhHHHHHhccHHHHHHHHHhHh
Q psy6890 10 LLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTAFKKVLL 89 (116)
Q Consensus 10 ~~~~k~~k~~~~iv~~f~i~~~P~~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~ 89 (116)
++|+|++|++++|+++|++||+||+++.++..+... .....++.++.+++++||++||+||++ +++||++++++++
T Consensus 401 ~~e~ka~ktl~ivv~~F~icWlP~~i~~l~~~~~~~---~~~~~~~~~~~~L~y~NS~iNPiIY~~-n~~FR~af~~il~ 476 (500)
T 2rh1_A 401 LKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLC 476 (500)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT---SSCHHHHHHHHHHHHHGGGTHHHHGGG-SHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---cccHHHHHHHHHHHHHHHhhcchhhhc-cHHHHHHHHHHHh
Confidence 578999999999999999999999999999887542 344567888999999999999999986 9999999999996
Q ss_pred hhhc
Q psy6890 90 CRYC 93 (116)
Q Consensus 90 ~~~~ 93 (116)
|.+.
T Consensus 477 ~~~~ 480 (500)
T 2rh1_A 477 LRRS 480 (500)
T ss_dssp C---
T ss_pred hhcc
Confidence 5543
No 3
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=99.87 E-value=1.4e-21 Score=137.54 Aligned_cols=91 Identities=25% Similarity=0.463 Sum_probs=76.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCcchHHHHHHHHHHHHhhhhhhHHHHHhccHHHHHHHHH
Q psy6890 7 RILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTAFKK 86 (116)
Q Consensus 7 ~~~~~~~k~~k~~~~iv~~f~i~~~P~~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~ 86 (116)
+..++++|++|++++++++|++||+||+++.++..+.... ......+..++.+++++||++||+||++++++||+++++
T Consensus 385 ~~~~~~~r~~~~l~~iv~~F~icw~P~~i~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~ 463 (488)
T 3eml_A 385 STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC-SHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRK 463 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcc-ccccHHHHHHHHHHHHHHhhhchhhhhhcCHHHHHHHHH
Confidence 3457899999999999999999999999999998876532 344566778899999999999999999999999999999
Q ss_pred hHhhhhcCCcCc
Q psy6890 87 VLLCRYCGEKNR 98 (116)
Q Consensus 87 ~~~~~~~~~~~~ 98 (116)
++++.+.+....
T Consensus 464 l~~~~~~~~~~~ 475 (488)
T 3eml_A 464 IIRSHVLRQQEP 475 (488)
T ss_dssp HHHHTTSCC---
T ss_pred HHhhcccccCCC
Confidence 998766554443
No 4
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=99.86 E-value=2.4e-22 Score=141.63 Aligned_cols=90 Identities=14% Similarity=0.196 Sum_probs=62.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCC-C-CCcchHHHHHHHHHHHHhhhhhhHHHHHhccHHHHHHHH
Q psy6890 8 ILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSP-C-ETKIHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTAFK 85 (116)
Q Consensus 8 ~~~~~~k~~k~~~~iv~~f~i~~~P~~v~~l~~~~~~~-~-~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~ 85 (116)
+.++++|++||+++++++|++||+||+++.++..+... + .......++.++.+++++||++||+||++++++||++++
T Consensus 381 ~~~~~~r~~k~l~~v~~~F~icwlP~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~iNPiIY~~~~~~fR~~~~ 460 (484)
T 3vw7_A 381 NRSKKSRALFLSAAVFCIFIICFGPTNVLLIAHYSFLSHTSTTEAAYFAYLLCVCVSSISCCIDPLIYYYASSECQRYVY 460 (484)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTCTTCTTSHHHHHHHHHHHHHHTTHHHHHHHHHHHTSSCC-----
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccccchHHHHHhhHHHHHHHH
Confidence 45678999999999999999999999999998865431 1 223445668899999999999999999999999999999
Q ss_pred HhHhhhhcCCcC
Q psy6890 86 KVLLCRYCGEKN 97 (116)
Q Consensus 86 ~~~~~~~~~~~~ 97 (116)
++++|++....+
T Consensus 461 ~ll~~~~~~~~~ 472 (484)
T 3vw7_A 461 SILCCKESSDPS 472 (484)
T ss_dssp ------------
T ss_pred HHHhhccCCCcc
Confidence 999777654433
No 5
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=99.86 E-value=1.5e-21 Score=136.23 Aligned_cols=91 Identities=24% Similarity=0.411 Sum_probs=74.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCcchHHHHHHHHHHHHhhhhhhHHHHHhccHHHHHHHHH
Q psy6890 7 RILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTAFKK 86 (116)
Q Consensus 7 ~~~~~~~k~~k~~~~iv~~f~i~~~P~~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~ 86 (116)
+..++++|++|++++++++|++||+||+++.++..+.+. .......+..++.+++++||++||+||++++++||+++++
T Consensus 344 ~~~~~~~r~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~ 422 (447)
T 4eiy_A 344 STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPD-CSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRK 422 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhheeccHHHHHHHHHHhcCc-ccccchHHHHHHHHHHHHHhccchhhhHhccHHHHHHHHH
Confidence 355788999999999999999999999999998887653 1234556788999999999999999999999999999999
Q ss_pred hHhhhhcCCcCc
Q psy6890 87 VLLCRYCGEKNR 98 (116)
Q Consensus 87 ~~~~~~~~~~~~ 98 (116)
++++.+++....
T Consensus 423 ~~~~~~~r~~~~ 434 (447)
T 4eiy_A 423 IIRSHVLRQQEP 434 (447)
T ss_dssp HHHHTC------
T ss_pred HHHHHHhccCCC
Confidence 998766544433
No 6
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=99.85 E-value=6.5e-22 Score=141.60 Aligned_cols=87 Identities=28% Similarity=0.235 Sum_probs=69.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCcchHHHHHHHHHHHHhhhhhhHHHHHhccHHHHHHHHHhH
Q psy6890 9 LLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTAFKKVL 88 (116)
Q Consensus 9 ~~~~~k~~k~~~~iv~~f~i~~~P~~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~ 88 (116)
.++++|++|++++++++|++||+||+++.++..+..... ........++.+++++|||+||+||++++++||+++++++
T Consensus 413 ~~~~~k~~~~~~~vv~~F~vcw~P~~i~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~ 491 (520)
T 3v2y_A 413 SSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKT-CDILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIM 491 (520)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTT-CSTTTSCHHHHHHHHHGGGTHHHHHHHHCHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 346999999999999999999999999999988764211 1223345567789999999999999999999999999999
Q ss_pred hhhhcCCc
Q psy6890 89 LCRYCGEK 96 (116)
Q Consensus 89 ~~~~~~~~ 96 (116)
++......
T Consensus 492 ~~~~~~~~ 499 (520)
T 3v2y_A 492 GRPLEVLF 499 (520)
T ss_dssp CSCC----
T ss_pred HHhccccc
Confidence 76554433
No 7
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=99.85 E-value=4.9e-21 Score=134.05 Aligned_cols=83 Identities=23% Similarity=0.476 Sum_probs=71.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCcchHHHHHHHHHHHHhhhhhhHHHHHhccHHHHHHHHH
Q psy6890 7 RILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTAFKK 86 (116)
Q Consensus 7 ~~~~~~~k~~k~~~~iv~~f~i~~~P~~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~ 86 (116)
++.++++|++|++++++++|++||+||.++.++..+...........++.++.+++++||++||+||++++++||+++++
T Consensus 373 ~~~~~~~r~~k~l~~v~~~F~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ 452 (464)
T 4dkl_A 373 EKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFRE 452 (464)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccchhHHHHHHHHHHhhhchhHHHHHHhhHHHHHHHHH
Confidence 34567899999999999999999999999999987765323445566688999999999999999999999999999999
Q ss_pred hHh
Q psy6890 87 VLL 89 (116)
Q Consensus 87 ~~~ 89 (116)
+++
T Consensus 453 lc~ 455 (464)
T 4dkl_A 453 FCI 455 (464)
T ss_dssp HHC
T ss_pred Hhc
Confidence 753
No 8
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=99.84 E-value=8.7e-21 Score=126.75 Aligned_cols=86 Identities=22% Similarity=0.427 Sum_probs=71.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCc-------chHHHHHHHHHHHHhhhhhhHHHHHhccH
Q psy6890 6 GRILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETK-------IHPGIFEVATWLGYASSMVNPIFYTIFNK 78 (116)
Q Consensus 6 ~~~~~~~~k~~k~~~~iv~~f~i~~~P~~v~~l~~~~~~~~~~~-------~~~~~~~~~~~l~~~ns~~NPiiY~~~~~ 78 (116)
+...++++|++|++.+++++|++||+|+++..++..+....... .......++.+++++||++||+||+++++
T Consensus 203 ~~~~~~~~k~~~~~~~v~~~f~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~ 282 (296)
T 2lnl_A 203 KAHMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQ 282 (296)
T ss_dssp SCCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCSCHHHHHHHTTHHHHHHHHHGGGGGTHHHHHHHHHCS
T ss_pred HHhhhhhhhHHHHHHHhhhheeeeehHHHHHHHHHHHhccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 34456788999999999999999999999999988776432111 12345778999999999999999999999
Q ss_pred HHHHHHHHhHhhh
Q psy6890 79 VFRTAFKKVLLCR 91 (116)
Q Consensus 79 ~fr~~~~~~~~~~ 91 (116)
+||++++++++|+
T Consensus 283 ~fR~~~~~ll~cr 295 (296)
T 2lnl_A 283 NFRHGFLKILAMH 295 (296)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999775
No 9
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=99.84 E-value=4.7e-20 Score=125.01 Aligned_cols=85 Identities=20% Similarity=0.429 Sum_probs=71.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCcchHHHHHHHHHHHHhhhhhhHHHHHhccHHHHHHHHH
Q psy6890 7 RILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTAFKK 86 (116)
Q Consensus 7 ~~~~~~~k~~k~~~~iv~~f~i~~~P~~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~ 86 (116)
+..++++|++|++++++++|++||+|+.+..++..+... ......+..+..+++++||++||+||++++++||+++++
T Consensus 243 ~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~--~~~~~~~~~~~~~l~~~ns~~nPiiY~~~~~~fR~~~~~ 320 (349)
T 1u19_A 243 TTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQG--SDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVT 320 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--SCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhheecCC--cccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH
Confidence 345678899999999999999999999999888776542 233445677888999999999999999999999999999
Q ss_pred hHhhhhc
Q psy6890 87 VLLCRYC 93 (116)
Q Consensus 87 ~~~~~~~ 93 (116)
+++|...
T Consensus 321 ~~~c~~~ 327 (349)
T 1u19_A 321 TLCCGKN 327 (349)
T ss_dssp HHTSSCC
T ss_pred HhcccCC
Confidence 9976543
No 10
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=99.84 E-value=8.1e-20 Score=124.78 Aligned_cols=85 Identities=34% Similarity=0.591 Sum_probs=71.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCCCC-CcchHHHHHHHHHHHHhhhhhhHHHHHhccHHHHHHHHH
Q psy6890 8 ILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCE-TKIHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTAFKK 86 (116)
Q Consensus 8 ~~~~~~k~~k~~~~iv~~f~i~~~P~~v~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~ 86 (116)
+.++++|++|++++++++|++||+|+.++.++..+..... ......++.+..+++++||++||+||++++++||+++++
T Consensus 239 ~~~~~~k~~~~~~~v~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~ 318 (364)
T 2ks9_A 239 QVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKH 318 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4567899999999999999999999999998887754322 223455677888999999999999999999999999999
Q ss_pred hHhhhh
Q psy6890 87 VLLCRY 92 (116)
Q Consensus 87 ~~~~~~ 92 (116)
+++|..
T Consensus 319 ~~~~~~ 324 (364)
T 2ks9_A 319 AFRCCP 324 (364)
T ss_dssp HHSSSC
T ss_pred HHhhcC
Confidence 997644
No 11
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=99.83 E-value=1.6e-20 Score=132.25 Aligned_cols=81 Identities=40% Similarity=0.880 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCcchHHHHHHHHHHHHhhhhhhHHHHHhccHHHHHHHHHhHh
Q psy6890 10 LLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTAFKKVLL 89 (116)
Q Consensus 10 ~~~~k~~k~~~~iv~~f~i~~~P~~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~ 89 (116)
++++|++|++++++++|++||+||+++.++..+.. .......++.++.+++++||++||+||++++++||++++++++
T Consensus 394 ~~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~--~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~ 471 (481)
T 3pbl_A 394 LREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQ--TCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILS 471 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS--SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC
T ss_pred chhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhccc--cccCcHHHHHHHHHHHHHhhccchHHHHHcCHHHHHHHHHHHh
Confidence 46899999999999999999999999999887755 3345566788899999999999999999999999999999997
Q ss_pred hhh
Q psy6890 90 CRY 92 (116)
Q Consensus 90 ~~~ 92 (116)
|.+
T Consensus 472 c~~ 474 (481)
T 3pbl_A 472 CGR 474 (481)
T ss_dssp C--
T ss_pred ccC
Confidence 554
No 12
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=99.83 E-value=1.1e-20 Score=132.53 Aligned_cols=82 Identities=33% Similarity=0.789 Sum_probs=69.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCcchHHHHHHHHHHHHhhhhhhHHHHHhccHHHHHHHHHhHh
Q psy6890 10 LLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTAFKKVLL 89 (116)
Q Consensus 10 ~~~~k~~k~~~~iv~~f~i~~~P~~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~ 89 (116)
++++|++|++++++++|++||+||.++.++..+... .....+..++.+++++||++||+||++++++||++++++++
T Consensus 381 ~~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~---~~~~~~~~i~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~ 457 (467)
T 3uon_A 381 SREKKVTRTILAILLAFIITWAPYNVMVLINTFCAP---CIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLM 457 (467)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCST---TSCHHHHHHHHHHHHHTTTHHHHHHHHHCHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHhhhhhhHHHHHcCHHHHHHHHHHHh
Confidence 578999999999999999999999999999887652 23466788999999999999999999999999999999997
Q ss_pred hhhcC
Q psy6890 90 CRYCG 94 (116)
Q Consensus 90 ~~~~~ 94 (116)
|.+..
T Consensus 458 c~~~~ 462 (467)
T 3uon_A 458 CHYKN 462 (467)
T ss_dssp -----
T ss_pred hhccC
Confidence 66543
No 13
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=99.83 E-value=2.6e-20 Score=130.17 Aligned_cols=83 Identities=33% Similarity=0.756 Sum_probs=69.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCcchHHHHHHHHHHHHhhhhhhHHHHHhccHHHHHHHHHh
Q psy6890 8 ILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTAFKKV 87 (116)
Q Consensus 8 ~~~~~~k~~k~~~~iv~~f~i~~~P~~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~ 87 (116)
..++++|++|++++++++|++||+||.++.++..+.... ....+..++.+++++||++||+||++++++||++++++
T Consensus 364 ~~~~~~k~~k~l~~vv~~f~icwlP~~i~~l~~~~~~~~---~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~l 440 (452)
T 3rze_A 364 HMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNC---CNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRI 440 (452)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC---SCTTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccc---ccHHHHHHHHHHHHHHhcccchhhhhccHHHHHHHHHH
Confidence 345889999999999999999999999999998876532 22335558899999999999999999999999999999
Q ss_pred Hhhhhc
Q psy6890 88 LLCRYC 93 (116)
Q Consensus 88 ~~~~~~ 93 (116)
++|.+.
T Consensus 441 l~~~~~ 446 (452)
T 3rze_A 441 LHIRSG 446 (452)
T ss_dssp HTC---
T ss_pred HHhccc
Confidence 977653
No 14
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=99.80 E-value=3.1e-19 Score=119.19 Aligned_cols=81 Identities=37% Similarity=0.689 Sum_probs=67.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCcchHHHHHHHHHHHHhhhhhhHHHHHhccHHHHHHHHHhH
Q psy6890 9 LLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTAFKKVL 88 (116)
Q Consensus 9 ~~~~~k~~k~~~~iv~~f~i~~~P~~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~ 88 (116)
.++++|++|++++++++|++||+|+.+..++..+... ........+..+++++||++||+||+ ++++||+++++++
T Consensus 224 ~~~~~k~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~---~~~~~~~~~~~~l~~~ns~~nPiiY~-~~~~fR~~~~~~l 299 (315)
T 4amj_A 224 LMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRD---LVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLL 299 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT---SSCHHHHHHHHHHHHHGGGTHHHHGG-GSHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHhccccHHHHc-CcHHHHHHHHHHh
Confidence 3478899999999999999999999999998877542 23345677888999999999999999 9999999999999
Q ss_pred hhhhc
Q psy6890 89 LCRYC 93 (116)
Q Consensus 89 ~~~~~ 93 (116)
+|...
T Consensus 300 ~~~~~ 304 (315)
T 4amj_A 300 AFPRK 304 (315)
T ss_dssp C----
T ss_pred CCCCc
Confidence 76543
No 15
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=125.49 Aligned_cols=88 Identities=24% Similarity=0.383 Sum_probs=67.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCcchHHHHHHHHHHHHhhhhhhHHHHHhccHHHHHHHH
Q psy6890 6 GRILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTAFK 85 (116)
Q Consensus 6 ~~~~~~~~k~~k~~~~iv~~f~i~~~P~~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~ 85 (116)
.++.++++|+++++++++++|++||+|+.++.++..+...........+..++.+++++|+++||+||++++++||++++
T Consensus 326 ~~~~~~~~~~~~~~~~vv~~F~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~lNPiIY~~~~~~fR~~~~ 405 (434)
T 4ea3_A 326 REKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFR 405 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999999999999999999988765432333444567788889999999999999999999999999
Q ss_pred HhHhhhhc
Q psy6890 86 KVLLCRYC 93 (116)
Q Consensus 86 ~~~~~~~~ 93 (116)
+++++.+.
T Consensus 406 ~~~~~~~~ 413 (434)
T 4ea3_A 406 KFCCASAL 413 (434)
T ss_dssp --------
T ss_pred HHhCcccc
Confidence 98865543
No 16
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=99.79 E-value=2.7e-20 Score=131.64 Aligned_cols=87 Identities=21% Similarity=0.294 Sum_probs=71.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCCC------C-CcchHHHHHHHHHHHHhhhhhhHHHHHhccHH
Q psy6890 7 RILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPC------E-TKIHPGIFEVATWLGYASSMVNPIFYTIFNKV 79 (116)
Q Consensus 7 ~~~~~~~k~~k~~~~iv~~f~i~~~P~~v~~l~~~~~~~~------~-~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~ 79 (116)
.+.++++|++|++++++++|++||+||.++.++..+.... . ......++.++.+++++||++||+||++++++
T Consensus 403 ~~~~~~~k~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~ 482 (502)
T 3odu_A 403 SKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAK 482 (502)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTTTCC
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHhcccchhhhhhcCHH
Confidence 4456789999999999999999999999999987764211 0 12334456789999999999999999999999
Q ss_pred HHHHHHHhHhhhhc
Q psy6890 80 FRTAFKKVLLCRYC 93 (116)
Q Consensus 80 fr~~~~~~~~~~~~ 93 (116)
||++++++++|..+
T Consensus 483 fR~~~~~ll~~~~~ 496 (502)
T 3odu_A 483 FKTSAQHALTSGRP 496 (502)
T ss_dssp CCCCHHHHHSSCSS
T ss_pred HHHHHHHHhccCCc
Confidence 99999999976543
No 17
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=99.78 E-value=7.4e-19 Score=125.42 Aligned_cols=80 Identities=38% Similarity=0.722 Sum_probs=66.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCcchHHHHHHHHHHHHhhhhhhHHHHHhccHHHHHHHHHhHh
Q psy6890 10 LLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTAFKKVLL 89 (116)
Q Consensus 10 ~~~~k~~k~~~~iv~~f~i~~~P~~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~ 89 (116)
++++|+++++++++++|++||+|+.++.++..+.. ......+..++.+++++||++||+||+ ++++||++++++++
T Consensus 415 ~~~~r~~~~l~~iv~~F~lcwlP~~i~~~~~~~~~---~~~~~~~~~~~~~l~~~ns~~NPiIY~-~~~~fR~~~~~~l~ 490 (514)
T 3sn6_R 415 LKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQD---NLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLC 490 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST---TSSCHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---cccchHHHHHHHHHHHHHHhhhHHhhc-CCHHHHHHHHHHhC
Confidence 46789999999999999999999999999887743 233455778889999999999999999 99999999999996
Q ss_pred hhhc
Q psy6890 90 CRYC 93 (116)
Q Consensus 90 ~~~~ 93 (116)
|+..
T Consensus 491 ~~~~ 494 (514)
T 3sn6_R 491 LRRS 494 (514)
T ss_dssp ----
T ss_pred cCcc
Confidence 5543
No 18
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=99.75 E-value=2.9e-18 Score=120.26 Aligned_cols=79 Identities=20% Similarity=0.404 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCcchHHHHHHHHHHHHhhhhhhHHHHHhccHHHHHHHHHhHh
Q psy6890 10 LLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTAFKKVLL 89 (116)
Q Consensus 10 ~~~~k~~k~~~~iv~~f~i~~~P~~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~ 89 (116)
++++|++|++++++++|++||+|+.++.++..+.. ..........+..+++++||++||+||++++++||++++++++
T Consensus 254 ~~~~k~~~~l~~iv~~F~i~~~P~~i~~~~~~~~~--~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~ 331 (448)
T 2z73_A 254 NAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGP--LEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFP 331 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--GGGCCHHHHHHHHHHHHHGGGSHHHHHHHHCHHHHHHHHHHCG
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC--cccCChHHHHHHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHH
Confidence 45889999999999999999999999999887754 1223345667888999999999999999999999999999985
Q ss_pred h
Q psy6890 90 C 90 (116)
Q Consensus 90 ~ 90 (116)
+
T Consensus 332 ~ 332 (448)
T 2z73_A 332 W 332 (448)
T ss_dssp G
T ss_pred H
Confidence 3
No 19
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=99.29 E-value=4.2e-13 Score=64.60 Aligned_cols=37 Identities=35% Similarity=0.590 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhccHHHHHHHHHhHhh
Q psy6890 54 IFEVATWLGYASSMVNPIFYTIFNKVFRTAFKKVLLC 90 (116)
Q Consensus 54 ~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~ 90 (116)
++.++.+++++||++||+||++.+++||+++++++++
T Consensus 2 ~~~~~~~l~~~ns~lNPiIY~~~~~~fr~~~~~~~~~ 38 (40)
T 2koe_A 2 VFAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMFPS 38 (40)
T ss_dssp HHHHHHHHHHHHHHSSTTTTBTTBHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhhh
Confidence 4567889999999999999999999999999988743
No 20
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=98.94 E-value=2.9e-11 Score=55.68 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q psy6890 12 EQKATKVLGVVFFTFVILWAPFFILNLIPSI 42 (116)
Q Consensus 12 ~~k~~k~~~~iv~~f~i~~~P~~v~~l~~~~ 42 (116)
|+|++|++++++++|++||+||++..++..+
T Consensus 1 e~k~~k~l~~vv~~F~icW~P~~i~~~~~~~ 31 (33)
T 2ki9_A 1 DVRLAKTLGLVLAVLLICWFPVLALMAHSLA 31 (33)
T ss_dssp CCSSSSHHHHHHHHHTTTSSHHHHHHTTTTC
T ss_pred CchhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3578899999999999999999998876543
No 21
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=88.59 E-value=4.4 Score=27.82 Aligned_cols=90 Identities=10% Similarity=0.080 Sum_probs=44.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCcchHHHHHHHHHHHHhhhhhhHHHHHhccHHHHHHHHHhH
Q psy6890 9 LLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTAFKKVL 88 (116)
Q Consensus 9 ~~~~~k~~k~~~~iv~~f~i~~~P~~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~ 88 (116)
.+++++..|....++++.+++.+-+.-+.+......-...........+. .++..=..+||.+--+..--+.+.+|+.+
T Consensus 326 ~~~~~~~~~~~~~~~~vv~~F~i~w~P~~i~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~ns~lNPiIY~~~~~~fR~~~ 404 (434)
T 4ea3_A 326 REKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAIL-RFCTALGYVNSCLNPILYAFLDENFKACF 404 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666665555444444444444433321112222223333 33333366888888888888889999999
Q ss_pred hhhhcCCcCcc
Q psy6890 89 LCRYCGEKNRR 99 (116)
Q Consensus 89 ~~~~~~~~~~~ 99 (116)
+..+++....+
T Consensus 405 ~~~~~~~~~~~ 415 (434)
T 4ea3_A 405 RKFCCASALGR 415 (434)
T ss_dssp C----------
T ss_pred HHHhCccccCC
Confidence 77665544433
No 22
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=81.02 E-value=11 Score=25.67 Aligned_cols=38 Identities=13% Similarity=0.053 Sum_probs=20.0
Q ss_pred HHHhhhhhhHHHHHhccHHHHHHHHHhHhhhhcCCcCc
Q psy6890 61 LGYASSMVNPIFYTIFNKVFRTAFKKVLLCRYCGEKNR 98 (116)
Q Consensus 61 l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~~~~ 98 (116)
++..=..+|+.+--+..--+-+.+++.++...++....
T Consensus 393 ~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~~~~~r 430 (447)
T 4eiy_A 393 LAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLR 430 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHhccchhhhHhccHHHHHHHHHHHHHHHhc
Confidence 33444445555555555556667777666554444333
No 23
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=79.15 E-value=13 Score=25.54 Aligned_cols=40 Identities=10% Similarity=0.031 Sum_probs=21.3
Q ss_pred HHHHHHhhhhhhHHHHHhccHHHHHHHHHhHhhhhcCCcC
Q psy6890 58 ATWLGYASSMVNPIFYTIFNKVFRTAFKKVLLCRYCGEKN 97 (116)
Q Consensus 58 ~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~~~ 97 (116)
...++..=..+|+.+--+..--+-+.+++.++...++...
T Consensus 431 ~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~l~~~~~~ 470 (488)
T 3eml_A 431 LMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL 470 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhhchhhhhhcCHHHHHHHHHHHhhccc
Confidence 3334444445555555555555666666666555444333
No 24
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=70.18 E-value=20 Score=23.35 Aligned_cols=37 Identities=11% Similarity=0.291 Sum_probs=24.0
Q ss_pred HHhhhhhhHHHHHhccHHHHHHHHHhHhhhhcCCcCc
Q psy6890 62 GYASSMVNPIFYTIFNKVFRTAFKKVLLCRYCGEKNR 98 (116)
Q Consensus 62 ~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~~~~ 98 (116)
...=..+|+.+--+..--+-+++|+.++...++.+..
T Consensus 292 ~~~l~~~ns~~nPiiY~~~~~~fR~~~~~~~~c~~~~ 328 (349)
T 1u19_A 292 PAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNP 328 (349)
T ss_dssp HHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHhHHHHHHHhHHHHHHHHHHhcccCCC
Confidence 3334445766666666677799999887766544443
No 25
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=69.69 E-value=4.2 Score=16.37 Aligned_cols=14 Identities=43% Similarity=0.541 Sum_probs=11.0
Q ss_pred HHHHHHHHHhHhhh
Q psy6890 78 KVFRTAFKKVLLCR 91 (116)
Q Consensus 78 ~~fr~~~~~~~~~~ 91 (116)
+.||+.++++++..
T Consensus 4 krfrkkfkklfkkl 17 (27)
T 2ket_A 4 KRFRKKFKKLFKKL 17 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 57899999988654
No 26
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=63.20 E-value=12 Score=26.35 Aligned_cols=41 Identities=15% Similarity=0.049 Sum_probs=24.7
Q ss_pred HHHHHHhhhhhhHHHHHhccHHHHHHHHHhHhhhhcCCcCcc
Q psy6890 58 ATWLGYASSMVNPIFYTIFNKVFRTAFKKVLLCRYCGEKNRR 99 (116)
Q Consensus 58 ~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~~~~~ 99 (116)
...+...=+.+|+.+--+..- +-+.+++.++...++.+...
T Consensus 456 ~~~~~~~l~~~ns~~NPiIY~-~~~~fR~~~~~~l~~~~~~~ 496 (514)
T 3sn6_R 456 VYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRSSL 496 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHTTCC------
T ss_pred HHHHHHHHHHHHHhhhHHhhc-CCHHHHHHHHHHhCcCcccc
Confidence 334444556678888888887 77889998876665554443
No 27
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=62.17 E-value=30 Score=22.68 Aligned_cols=31 Identities=10% Similarity=0.128 Sum_probs=19.8
Q ss_pred hhhhhhHHHHHhccHHHHHHHHHhHhhhhcC
Q psy6890 64 ASSMVNPIFYTIFNKVFRTAFKKVLLCRYCG 94 (116)
Q Consensus 64 ~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~ 94 (116)
.=..+|+.+--+..--+-+++|+.++...++
T Consensus 292 ~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 322 (364)
T 2ks9_A 292 WLAMSSTMYNPIIYCCLNDRFRLGFKHAFRC 322 (364)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 3345566666666666778888877665543
No 28
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=55.85 E-value=16 Score=25.82 Aligned_cols=38 Identities=5% Similarity=-0.038 Sum_probs=20.8
Q ss_pred HHhhhhhhHHHHHhccHHHHHHHHHhHhhhhcCCcCcc
Q psy6890 62 GYASSMVNPIFYTIFNKVFRTAFKKVLLCRYCGEKNRR 99 (116)
Q Consensus 62 ~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~~~~~ 99 (116)
...=+.+|+.+-=+..-=+-+.+++.++...++.....
T Consensus 461 ~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~ 498 (520)
T 3v2y_A 461 FLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMGRPLEVL 498 (520)
T ss_dssp HHHHHHHGGGTHHHHHHHHCHHHHHHHHTTCCSCC---
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhcccc
Confidence 33344556655555555566888888766555444433
No 29
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=52.72 E-value=33 Score=21.75 Aligned_cols=37 Identities=11% Similarity=-0.070 Sum_probs=23.9
Q ss_pred HHHHhhhhhhHHHHHhccHHHHHHHHHhHhhhhcCCcC
Q psy6890 60 WLGYASSMVNPIFYTIFNKVFRTAFKKVLLCRYCGEKN 97 (116)
Q Consensus 60 ~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~~~ 97 (116)
.+...=..+|+.+--+..- +-+++|+.++...++...
T Consensus 268 ~~~~~l~~~ns~~nPiiY~-~~~~fR~~~~~~l~~~~~ 304 (315)
T 4amj_A 268 VAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAFPRK 304 (315)
T ss_dssp HHHHHHHHHGGGTHHHHGG-GSHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhccccHHHHc-CcHHHHHHHHHHhCCCCc
Confidence 3334445578888888887 778999988776655443
No 30
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=47.11 E-value=64 Score=21.83 Aligned_cols=82 Identities=10% Similarity=0.081 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCcchHHHHHHHHHHHHhhhhhhHHHHHhccHHHHHHHHHhHhhhh
Q psy6890 13 QKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTAFKKVLLCRY 92 (116)
Q Consensus 13 ~k~~k~~~~iv~~f~i~~~P~~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~ 92 (116)
++-.|...+++++.+++.+-+.=+.++.....-. .............+...=..+|+.+--+..--+-+++|+.++..+
T Consensus 376 ~~~~r~~k~l~~v~~~F~icw~P~~i~~l~~~~~-~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~lc 454 (464)
T 4dkl_A 376 RNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALI-TIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFC 454 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-cCCccccchhHHHHHHHHHHhhhchhHHHHHHhhHHHHHHHHHHh
Confidence 3445666666555555554444444444443211 112233444444455555678888888888888899999997765
Q ss_pred cCC
Q psy6890 93 CGE 95 (116)
Q Consensus 93 ~~~ 95 (116)
++.
T Consensus 455 ~~~ 457 (464)
T 4dkl_A 455 IPT 457 (464)
T ss_dssp C--
T ss_pred ccc
Confidence 543
No 31
>3noh_A Putative peptide binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Ruminococcus gnavus}
Probab=43.39 E-value=7 Score=22.74 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=19.4
Q ss_pred hhhHHHHHhccHHHHHHHHHhH
Q psy6890 67 MVNPIFYTIFNKVFRTAFKKVL 88 (116)
Q Consensus 67 ~~NPiiY~~~~~~fr~~~~~~~ 88 (116)
|+||.+=.+.+.++|+.++.+.
T Consensus 26 ~iNp~ld~~~~~~~R~~Lka~~ 47 (139)
T 3noh_A 26 CMNPLLDKLSDEDIREQLKAFV 47 (139)
T ss_dssp EECTTSGGGCCHHHHHHHHHHH
T ss_pred EeccccCccccHHHHHHHHHHh
Confidence 6788888889999999999877
No 32
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=37.76 E-value=57 Score=22.20 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=9.0
Q ss_pred hhHHHHHhccHHHHHHHHHhHh
Q psy6890 68 VNPIFYTIFNKVFRTAFKKVLL 89 (116)
Q Consensus 68 ~NPiiY~~~~~~fr~~~~~~~~ 89 (116)
+|+.+--+..--+-+.+|+.++
T Consensus 306 ~ns~~NPiIY~~~~~~fR~~~~ 327 (448)
T 2z73_A 306 ASAIHNPMIYSVSHPKFREAIS 327 (448)
T ss_dssp HGGGSHHHHHHHHCHHHHHHHH
T ss_pred HHHhhcchHHHHhhHHHHHHHH
Confidence 3333333333334444444443
No 33
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=33.23 E-value=59 Score=22.24 Aligned_cols=85 Identities=11% Similarity=0.025 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCc-chHHHHHHHHHHHHhhhhhhHHHHHhccHHHHHHHHHhHhhhhcC
Q psy6890 16 TKVLGVVFFTFVILWAPFFILNLIPSICSPCETK-IHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTAFKKVLLCRYCG 94 (116)
Q Consensus 16 ~k~~~~iv~~f~i~~~P~~v~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~ 94 (116)
.|...+++++.+++.+-+.=+.++.....-.... ...........++..=..+|..+--+..-=+.+.+|+.++...++
T Consensus 386 ~r~~k~l~~v~~~F~icwlP~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~iNPiIY~~~~~~fR~~~~~ll~~ 465 (484)
T 3vw7_A 386 SRALFLSAAVFCIFIICFGPTNVLLIAHYSFLSHTSTTEAAYFAYLLCVCVSSISCCIDPLIYYYASSECQRYVYSILCC 465 (484)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTCTTCTTSHHHHHHHHHHHHHHTTHHHHHHHHHHHTSSCC----------
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccccchHHHHHhhHHHHHHHHHHHhh
Confidence 3444555555444443333333333332211111 122334444455555566777777777777778888888765555
Q ss_pred CcCccc
Q psy6890 95 EKNRRR 100 (116)
Q Consensus 95 ~~~~~~ 100 (116)
+.....
T Consensus 466 ~~~~~~ 471 (484)
T 3vw7_A 466 KESSDP 471 (484)
T ss_dssp ------
T ss_pred ccCCCc
Confidence 544433
No 34
>2v1n_A KIN17, protein KIN homolog; nuclear protein, winged helix motif; NMR {Homo sapiens}
Probab=24.59 E-value=49 Score=18.80 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=15.7
Q ss_pred ccHHHHHHHHHhHhhhhcCC
Q psy6890 76 FNKVFRTAFKKVLLCRYCGE 95 (116)
Q Consensus 76 ~~~~fr~~~~~~~~~~~~~~ 95 (116)
++++|+++|.++++.+....
T Consensus 19 fS~eF~~~Fl~lLr~~~g~k 38 (111)
T 2v1n_A 19 FSEEFRNDFLELLRRRFGTK 38 (111)
T ss_dssp HHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHHhcCCc
Confidence 47899999999998765533
No 35
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=22.56 E-value=26 Score=18.22 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhh-hhHHHHHhccH
Q psy6890 55 FEVATWLGYASSM-VNPIFYTIFNK 78 (116)
Q Consensus 55 ~~~~~~l~~~ns~-~NPiiY~~~~~ 78 (116)
..++.-++.=.+= +||-+|.+..+
T Consensus 28 L~IAK~LGlktAK~VNp~LY~m~~~ 52 (72)
T 3eyi_A 28 LVIAQALGMRTAKDVNRDLYRMKSR 52 (72)
T ss_dssp HHHHHHTTCCSGGGTHHHHHHHHHT
T ss_pred HHHHHHhCcchhhhcCHHHHHHHHc
Confidence 4455555555555 89999987543
No 36
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=22.37 E-value=1.9e+02 Score=19.63 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCcchHHHHHHHHHHHHhhhhhhHHHHHhccHHHHHHHHHhHhhhhc
Q psy6890 14 KATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPIFYTIFNKVFRTAFKKVLLCRYC 93 (116)
Q Consensus 14 k~~k~~~~iv~~f~i~~~P~~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~ 93 (116)
+-.|....++++.+++.+-+.=+.++..... .............+...=..+|+.+--+..--+-+.+|+.++...+
T Consensus 395 ~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~---~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~ 471 (481)
T 3pbl_A 395 REKKATQMVAIVLGAFIVCWLPFFLTHVLNT---HCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILS 471 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHh---ccccccCcHHHHHHHHHHHHHhhccchHHHHHcCHHHHHHHHHHHh
Confidence 4556666655555554444444444333321 1111112223333344444567777777776777889998876665
Q ss_pred CCcC
Q psy6890 94 GEKN 97 (116)
Q Consensus 94 ~~~~ 97 (116)
+.+.
T Consensus 472 c~~~ 475 (481)
T 3pbl_A 472 CGRP 475 (481)
T ss_dssp C---
T ss_pred ccCc
Confidence 4443
No 37
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=22.34 E-value=81 Score=20.46 Aligned_cols=23 Identities=9% Similarity=-0.107 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhH
Q psy6890 10 LLEQKATKVLGVVFFTFVILWAP 32 (116)
Q Consensus 10 ~~~~k~~k~~~~iv~~f~i~~~P 32 (116)
.-++|..+.++.+++.+++||.-
T Consensus 9 ELR~Rli~~~i~~~v~~~~~~~~ 31 (249)
T 4b4a_A 9 ELRYRLIISIIAFLIGSGIAFYF 31 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999888754
No 38
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=21.80 E-value=59 Score=13.78 Aligned_cols=14 Identities=7% Similarity=0.444 Sum_probs=7.0
Q ss_pred hhhHHHHHHHHHHh
Q psy6890 29 LWAPFFILNLIPSI 42 (116)
Q Consensus 29 ~~~P~~v~~l~~~~ 42 (116)
||+-...+..+...
T Consensus 8 cwilvLfva~wsdv 21 (30)
T 1skh_A 8 SWILVLFVAMWSDV 21 (30)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHH
Confidence 55555555555444
No 39
>1s6c_B Potassium voltage-gated channel subfamily D membe; EF-hand, transport protein; 2.00A {Rattus norvegicus}
Probab=21.53 E-value=43 Score=14.26 Aligned_cols=9 Identities=44% Similarity=0.903 Sum_probs=6.9
Q ss_pred HHHHhhhHH
Q psy6890 25 TFVILWAPF 33 (116)
Q Consensus 25 ~f~i~~~P~ 33 (116)
.++-||+|+
T Consensus 3 a~v~~w~~f 11 (30)
T 1s6c_B 3 AGVAAWLPF 11 (30)
T ss_dssp HHHHTTHHH
T ss_pred hhhhhhccc
Confidence 467788887
No 40
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=20.63 E-value=54 Score=13.38 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhhHHHH
Q psy6890 19 LGVVFFTFVILWAPFFI 35 (116)
Q Consensus 19 ~~~iv~~f~i~~~P~~v 35 (116)
+..++..|+.|-.|-..
T Consensus 3 laa~~FlyFa~l~paIa 19 (26)
T 1btq_A 3 LAAVIFIYFAALSPAIT 19 (26)
T ss_pred HHHHHHHHHHHHcchhc
Confidence 44566667777766543
No 41
>1bzk_A Protein (BAND 3 anion transport protein); human erythrocyte anion transporter, transmembrane, synthetic peptide; NMR {Synthetic} SCOP: j.35.1.1
Probab=20.59 E-value=69 Score=14.78 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhhHHH
Q psy6890 16 TKVLGVVFFTFVILWAPFF 34 (116)
Q Consensus 16 ~k~~~~iv~~f~i~~~P~~ 34 (116)
.+.+..++-+|+.|-+|-.
T Consensus 16 ~~~laa~~fiyFa~l~PaI 34 (43)
T 1bzk_A 16 PQVLAAVIFIYFAALSPAI 34 (43)
T ss_dssp SHHHHHHHHHHHHTSTTTT
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4677888888888888753
Done!