RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6890
(116 letters)
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 108 bits (270), Expect = 3e-29
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 4 RHGRILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGY 63
+ L E+KAT+++ +V F++ W PFF+ +++ + C C + P ++ TWLGY
Sbjct: 388 DAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTC--HVSPELYSATTWLGY 445
Query: 64 ASSMVNPIFYTIFNKVFRTAFKKVLLCRYCGEKNRR 99
+S +NP+ YT FN FR AF K+L C E +
Sbjct: 446 VNSALNPVIYTTFNIEFRKAFLKILSCGRPLEVLFQ 481
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 107 bits (267), Expect = 1e-28
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 1 MLTRHGRILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATW 60
+ L E A K L ++ F + W P I+N C C + + +A
Sbjct: 379 TWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC-SHAPLWLMYLAIV 437
Query: 61 LGYASSMVNPIFYTIFNKVFRTAFKKVLLCRYCGEKNRRRN 101
L + +S+VNP Y + FR F+K++ ++ +
Sbjct: 438 LSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKA 478
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 105 bits (263), Expect = 3e-28
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 4 RHGRILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGY 63
E+K T+ + + F+I WAP+ ++ LI + C+PC I ++ + WL Y
Sbjct: 375 DAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPC---IPNTVWTIGYWLCY 431
Query: 64 ASSMVNPIFYTIFNKVFRTAFKKVLLCRYCGEKNRR 99
+S +NP Y + N F+ FK +L+C Y R
Sbjct: 432 INSTINPACYALCNATFKKTFKHLLMCHYKNIGATR 467
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 103 bits (257), Expect = 2e-27
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 4 RHGRILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGY 63
+ E+KA K LG + F++ W P+FI ++ + C C + + WLGY
Sbjct: 360 DAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNC---CNEHLHMFTIWLGY 416
Query: 64 ASSMVNPIFYTIFNKVFRTAFKKVLLCRYCGEKNRRR 100
+S +NP+ Y + N+ F+ FK++L R GE +
Sbjct: 417 INSTLNPLIYPLCNENFKKTFKRILHIR-SGENLYFQ 452
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 101 bits (253), Expect = 1e-26
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 1 MLTRHGRILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATW 60
L R + L E KA K LG++ TF + W PFFI+N++ I I ++ + W
Sbjct: 406 GLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNL---IRKEVYILLNW 462
Query: 61 LGYASSMVNPIFYTIFNKVFRTAFKKVLLCRYCGEKNRRRN 101
+GY +S NP+ Y + FR AF+++L R K
Sbjct: 463 IGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRSSLKAYGNG 502
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 100 bits (250), Expect = 2e-26
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Query: 1 MLTRHGRILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATW 60
L R L E A K L ++ F + W P I+N C C + +A
Sbjct: 338 YLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCS-HAPLWLMYLAIV 396
Query: 61 LGYASSMVNPIFYTIFNKVFRTAFKKVLLCRYCGEKNRRR 100
L + +S+VNP Y + FR F+K++ ++ +
Sbjct: 397 LSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFK 436
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 100 bits (250), Expect = 2e-26
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 4 RHGRILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGY 63
+ L E KA K LG++ TF + W PFFI+N++ I I ++ + W+GY
Sbjct: 395 DAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNL---IRKEVYILLNWIGY 451
Query: 64 ASSMVNPIFYTIFNKVFRTAFKKVLLCRYCGEKNRRR 100
+S NP+ Y + FR AF+++L R K
Sbjct: 452 VNSGFNPLIYC-RSPDFRIAFQELLCLRRSSLKAYGN 487
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 87.5 bits (217), Expect = 3e-22
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPI 71
E KA K LG++ F + W PFF++N++ + +F WLGYA+S +NPI
Sbjct: 227 EHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDL---VPDWLFVAFNWLGYANSAMNPI 283
Query: 72 FYTIFNKVFRTAFKKVLLCRYCGEKNRRRN 101
Y + FR AFK++L ++ +
Sbjct: 284 IYC-RSPDFRKAFKRLLAFPRKADRRLHHH 312
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 86.5 bits (213), Expect = 2e-21
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Query: 1 MLTRHGRILLLEQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATW 60
+ K + +V F+ WAP FIL L+ C I E
Sbjct: 405 TWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILF-RAEYFLV 463
Query: 61 LGYASSMVNPIFYTIFNKVFRTAFKKVLLCRYC 93
L +S NPI YT+ NK R AF +++
Sbjct: 464 LAVLNSGTNPIIYTLTNKEMRRAFIRIMGRPLE 496
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 79.7 bits (197), Expect = 4e-19
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 13 QKATKVLGVVFFTFVILWAPFFILNLIPSICSP-CETKIHPGIFEVATWLGYASSMVNPI 71
+K K++ VV TF I W PF I L+P I K ++ WL +S+M NPI
Sbjct: 244 RKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPI 303
Query: 72 FYTIFNKVFRTAFKKVLLCRYCGEKNRRRN 101
Y N FR FK C
Sbjct: 304 IYCCLNDRFRLGFKHAFRCCPFISAGDYEG 333
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 76.8 bits (189), Expect = 6e-18
Identities = 23/91 (25%), Positives = 38/91 (41%)
Query: 14 KATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPIFY 73
+ T+++ VV FV W P + L + ++ I T LGY +S +NPI Y
Sbjct: 334 RITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILY 393
Query: 74 TIFNKVFRTAFKKVLLCRYCGEKNRRRNKKP 104
++ F+ F+K G + P
Sbjct: 394 AFLDENFKACFRKFCCASALGRPLEVLFQGP 424
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 68.4 bits (167), Expect = 6e-15
Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPI 71
E + K+ V+ F++ W+P+ ++ L+ + P ++ AS++ NP+
Sbjct: 256 EMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEW--VTPYAAQLPVMFAKASAIHNPM 313
Query: 72 FYTIFNKVFRTAFKKVLLCRYCGEKNR 98
Y++ + FR A + +
Sbjct: 314 IYSVSHPKFREAISQTFPWVLTCCQFD 340
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 67.7 bits (165), Expect = 1e-14
Identities = 19/80 (23%), Positives = 40/80 (50%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPI 71
++ T+++ VV F++ W P I +I ++ + ET + LGY +S +NP+
Sbjct: 378 LRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPV 437
Query: 72 FYTIFNKVFRTAFKKVLLCR 91
Y ++ F+ F++ +
Sbjct: 438 LYAFLDENFKRCFREFCIPT 457
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 65.1 bits (159), Expect = 7e-14
Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPI 71
E++ T+++ ++ F+I W P+ + + P + + S++ NP+
Sbjct: 248 EKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQG--SDFGPIFMTIPAFFAKTSAVYNPV 305
Query: 72 FYTIFNKVFRTAFKKVLLCRYCGEKN 97
Y + NK FR L C +
Sbjct: 306 IYIMMNKQFRNCMVTTLCCGKNPLGD 331
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 49.9 bits (119), Expect = 2e-08
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 12 EQKATKVLGVVFFTFVILWAPFFILNLI------PSICSPCETKIHPGI-FEVATWLGYA 64
++KA K ++ F W P++I I I CE + + L +
Sbjct: 408 KRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFF 467
Query: 65 SSMVNPIFYTIFNKVFRTAFKKVLLCRYCGE 95
+NPI Y F+T+ + L E
Sbjct: 468 HCCLNPILYAFLGAKFKTSAQHALTSGRPLE 498
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1,
membrane protein, signaling protein; NMR {Homo sapiens}
Length = 40
Score = 26.2 bits (57), Expect = 0.59
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 54 IFEVATWLGYASSMVNPIFYTIFNKVFRTAFKKVL 88
+F A+ L +S VNPI Y + +K R AF+ +
Sbjct: 2 VFAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMF 36
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 2.1
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 6/24 (25%)
Query: 95 EKNRRRNK-----KPWYPPSNPSV 113
EK + K K + S P++
Sbjct: 18 EKQALK-KLQASLKLYADDSAPAL 40
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Length = 101
Score = 24.8 bits (54), Expect = 4.3
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 93 CGEKNRRRNKKPWYPPS 109
GEK R +K+ PS
Sbjct: 83 KGEKVRPSHKRCISGPS 99
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas;
HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB:
3nye_A* 3nyf_A* 3sm8_A*
Length = 381
Score = 25.3 bits (56), Expect = 6.0
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 2 LTRHGRILLLEQKAT 16
L+ HGR+++LE++A
Sbjct: 28 LSAHGRVVVLEREAQ 42
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 24.6 bits (53), Expect = 9.9
Identities = 5/38 (13%), Positives = 9/38 (23%)
Query: 61 LGYASSMVNPIFYTIFNKVFRTAFKKVLLCRYCGEKNR 98
+ + P F F +F + V
Sbjct: 198 WMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQD 235
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.143 0.476
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,808,863
Number of extensions: 90470
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 22
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.9 bits)