RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6890
         (116 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 64.2 bits (155), Expect = 5e-14
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 12  EQKATKVLGVVFFTFVILWAPFFILNLIPSICSPCETKIHPGIFEVATWLGYASSMVNPI 71
           E++ T+++ ++   F+I W P+  +          +    P    +  +    S++ NP+
Sbjct: 247 EKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSD--FGPIFMTIPAFFAKTSAVYNPV 304

Query: 72  FYTIFNKVFRTAFKKVLLCRYCGEKNRRRN 101
            Y + NK FR      L C      +   +
Sbjct: 305 IYIMMNKQFRNCMVTTLCCGKNPLGDDEAS 334


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.143    0.476 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 461,304
Number of extensions: 19007
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 7
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.1 bits)