BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6892
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril
In Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 15 NIWAVVTLILVFCTATGNILVCLAISWEKRLQNVTNYFLMSLAITDLMVAVLVMPLGI 72
+++ V L + GN+LVC A+ LQNVTNYF++SLA D+ V VL +P I
Sbjct: 32 SVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAI 89
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 15 NIWAVVTLILVFCTATGNILVCLAISWEKRLQNVTNYFLMSLAITDLMVAVLVMPLGI 72
+++ V L + GN+LVC A+ LQNVTNYF++SLA D+ V VL +P I
Sbjct: 22 SVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAI 79
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 17 WAVVTLILVFCTATGNILVCLAISWEKRLQNVTNYFLMSLAITDLMVAVLVMP 69
+A+ L+ GN LVC+A+ E+ LQ TNY ++SLA+ DL+VA LVMP
Sbjct: 41 YALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMP 93
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 31 GNILVCLAISWEKRLQNVTNYFLMSLAITDLMVAVLVMPLGI 72
GN+LVC A+ LQNVTNYF++SLA D++V VL +P I
Sbjct: 23 GNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFAI 64
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With
An Allosteric Inverse-Agonist Antibody At 2.7 A
Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With
An Allosteric Inverse-Agonist Antibody At 3.1 A
Resolution
Length = 326
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 31 GNILVCLAISWEKRLQNVTNYFLMSLAITDLMVAVLVMPLGI 72
GN+LVC A+ LQNVTNYF++SLA D+ V VL +P I
Sbjct: 23 GNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAI 64
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 18 AVVTLILVFCTATGNILVCLAISWEKRLQNVTNYFLMSLAITDLMVAVLVMPLG 71
+V ++V GN+LV AI+ +RLQ VTNYF+ SLA DL++ + V+P G
Sbjct: 186 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFG 239
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 18 AVVTLILVFCTATGNILVCLAISWEKRLQNVTNYFLMSLAITDLMVAVLVMPLG 71
+V ++V GN+LV AI+ +RLQ VTNYF+ SLA DL++ + V+P G
Sbjct: 45 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFG 98
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic
G Protein- Coupled Receptor
Length = 500
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 18 AVVTLILVFCTATGNILVCLAISWEKRLQNVTNYFLMSLAITDLMVAVLVMPLG 71
+V ++V GN+LV AI+ +RLQ VTNYF+ SLA DL++ + V+P G
Sbjct: 44 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFG 97
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 31 GNILVCLAISWEKRLQNVTNYFLMSLAITDLMVAVLVMPLGI 72
GN+LVC A+ LQNVTNYF++S A D++V VL +P I
Sbjct: 23 GNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAI 64
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic
Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 18 AVVTLILVFCTATGNILVCLAISWEKRLQNVTNYFLMSLAITDLMVAVLVMPLG 71
+V ++V GN+LV AI+ +RLQ VTNYF+ SLA DL++ + V+P G
Sbjct: 45 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFG 98
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 18 AVVTLILVFCTATGNILVCLAISWEKRLQNVTNYFLMSLAITDLMVAVLVMPLG 71
+V ++V GN+LV AI+ +RLQ VTNYF+ SLA DL++ + V+P G
Sbjct: 38 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFG 91
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 18 AVVTLILVFCTATGNILVCLAISWEKRLQNVTNYFLMSLAITDLMVAVLVMPLG 71
+V ++V GN+LV AI+ +RLQ VTNYF+ SLA DL++ + V+P G
Sbjct: 37 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFG 90
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 18 AVVTLILVFCTATGNILVCLAISWEKRLQNVTNYFLMSLAITDLMVAVLVMPLG 71
+V ++V GN+LV AI+ +RLQ VTNYF+ SLA DL++ + V+P G
Sbjct: 13 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFG 66
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 18 AVVTLILVFCTATGNILVCLAISWEKRLQNVTNYFLMSLAITDLMVAVLVMPLG 71
+V ++V GN+LV AI+ +RLQ VTNYF+ SLA DL++ + V+P G
Sbjct: 14 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFG 67
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 18 AVVTLILVFCTATGNILVCLAISWEKRLQNVTNYFLMSLAITDLMVAVLVMPLGILTLVR 77
A+V L++V GN+LV AI +RLQ +TN F+ SLA DL+V +LV+P G +VR
Sbjct: 19 ALVVLLIV----AGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVR 74
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates
Crystallization Of A G Protein Coupled Receptor
Length = 309
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 18 AVVTLILVFCTATGNILVCLAISWEKRLQNVTNYFLMSLAITDLMVAVLVMPLG 71
+V ++V GN+LV AI+ +RLQ VTNYF+ SLA DL++ + V+P G
Sbjct: 9 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFG 62
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 18 AVVTLILVFCTATGNILVCLAISWEKRLQNVTNYFLMSLAITDLMVAVLVMPLGILTLVR 77
A+V L++V GN+LV AI +RLQ +TN F+ SLA DL+V +LV+P G +VR
Sbjct: 19 ALVVLLIV----AGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVR 74
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 16 IWAVV-----TLILVFCTATGNILVCLAISWEKRLQNVTNYFLMSLAITDLMVAVLVMPL 70
IW VV T L T GNILV +A K+L+ V NYFL+SLA DL++ V+ M L
Sbjct: 9 IWQVVFIAFLTGFLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNL 68
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 30/53 (56%)
Query: 24 LVFCTATGNILVCLAISWEKRLQNVTNYFLMSLAITDLMVAVLVMPLGILTLV 76
L T GNILV ++I + LQ V NYFL SLA DL++ V M L L V
Sbjct: 33 LSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTV 85
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 32 NILVCLAISWEKRLQNVTNYFLMSLAITDLMVAVLVMPLGILTLV 76
N+LV A+ E++L V N +++SL++ DL+V +VMP+ IL L+
Sbjct: 26 NLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLL 70
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 4 EVSFGLDAASWN-IWAVVTLILVFCTA-TGNILVCLAISWEKRLQNVTNYFLMSLAITDL 61
E F + A++N I+ ++F T GN LV L + ++K+L+++T+ + + L++ DL
Sbjct: 36 EPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADL 95
Query: 62 MVAVLVMPL 70
+ V+ +P
Sbjct: 96 LF-VITLPF 103
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 4 EVSFGLDAASWN-IWAVVTLILVFCTA-TGNILVCLAISWEKRLQNVTNYFLMSLAITDL 61
E F + A++N I+ ++F T GN LV L + ++K+L+++T+ + + L++ DL
Sbjct: 36 EPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADL 95
Query: 62 MVAVLVMPL 70
+ V+ +P
Sbjct: 96 LF-VITLPF 103
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 4 EVSFGLDAASWN-IWAVVTLILVFCTA-TGNILVCLAISWEKRLQNVTNYFLMSLAITDL 61
E F + A++N I+ ++F T GN LV L + ++K+L+++T+ + + L++ DL
Sbjct: 36 EPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADL 95
Query: 62 MVAVLVMPL 70
+ V+ +P
Sbjct: 96 LF-VITLPF 103
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 19 VVTLILVFCTAT--GNILVCLAISWEKRLQNVTNYFLMSLAITDLMVAVLVMPL 70
+V L L C GN LV I +++ TN ++ +LA+ D +V +L +P
Sbjct: 128 IVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLV-LLTLPF 180
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS
A LIGAND For Nk1r
Length = 364
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 42 EKRLQNVTNYFLMSLAITDLMVAVL 66
KR++ VTNYFL++LA + +A
Sbjct: 60 HKRMRTVTNYFLVNLAFAEASMAAF 84
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 20 VTLILVFC-TATGNILVCLAISWEKRLQNVTNYFLMSLAITDLMVAV 65
V IL+ C NI V L I K+ YF+ +LA++DL+ V
Sbjct: 68 VVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGV 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,100,137
Number of Sequences: 62578
Number of extensions: 79005
Number of successful extensions: 159
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 31
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)