RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6892
(190 letters)
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 84.2 bits (207), Expect = 3e-20
Identities = 13/61 (21%), Positives = 25/61 (40%)
Query: 10 DAASWNIWAVVTLILVFCTATGNILVCLAISWEKRLQNVTNYFLMSLAITDLMVAVLVMP 69
+ +++ A +L+ N L K+L+ NY L++LA+ DL +
Sbjct: 33 EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFT 92
Query: 70 L 70
Sbjct: 93 T 93
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 27.2 bits (60), Expect = 0.65
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 110 REEEEEEEEEEEEEEEQEQDEYLEEDENEKERRLPEEDERGEDEEKKEE 158
+ ++E++ ++ +Q++ +Y E E EE +R EEK
Sbjct: 53 KLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLN 101
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 26.7 bits (59), Expect = 1.2
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 113 EEEEEEEEEEEEEQEQDEYLEEDENEKERRLPEEDERGEDEEKKEEEEDKQGEEKRV 169
+ E+ + ++ ++ E+DE L++ EN E+E E+ E E Q +KR+
Sbjct: 3 DNEDNFDGDDFDDVEEDEGLDDLEN-------AEEEGQENVEILPSGERPQANQKRI 52
Score = 25.2 bits (55), Expect = 3.7
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 111 EEEEEEEEEEEEEEEQEQDEYLEEDENEKERRLPEEDERGEDEEKK 156
+ ++ ++ EE+E + E EE+ E LP + ++++
Sbjct: 7 NFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRI 52
>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide
phosphodiesterase 1b, PDE1B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 357
Score = 27.0 bits (59), Expect = 1.3
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 132 LEEDENEKERRLPEEDERGEDEEKKEEEEDKQGEEKRVEDKIGDEKRLEENKKK 185
+ED K + + + D E + D KR++ENK+K
Sbjct: 303 ADEDSKSKNQPSFQWRQPSLDVEVGDPNPDVVSFRSTWV------KRIQENKQK 350
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 25.9 bits (57), Expect = 1.5
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 96 ENQLFKAGARDETAREEEEEEEEEEEEEEEQEQ----DEYLEEDENEKERRLPE 145
E F+ + + E + + + EEQ + + EE+ EKE L +
Sbjct: 46 EIYYFRKTVGYKVPKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKENLLSQ 99
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 26.5 bits (57), Expect = 2.3
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 109 AREEEEEEEEEEEEEEEQEQ 128
+ E E++ E+ E
Sbjct: 303 WKVEAEDKTEKLAAALEHHH 322
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 25.8 bits (56), Expect = 3.1
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 115 EEEEEEEEEEEQEQDEYLEEDENEKERRLPEEDERGEDEEKKEEEEDKQGEEKRVEDKIG 174
+ E E+ + + E L + + + R + ER + +E E +++
Sbjct: 20 KLESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQEYELIHQDKE------- 72
Query: 175 DEKRLEENKKKKTQ 188
DE L + +++ Q
Sbjct: 73 DEGCLRKYRRQCMQ 86
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 25.4 bits (55), Expect = 4.7
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 106 DETAREEEEEEEEEEEEEEEQEQDEYLEEDENEKERRLPE 145
++ A+ +E E E E E+++ + E E+ + +P
Sbjct: 79 EQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPS 118
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 25.5 bits (56), Expect = 4.8
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 100 FKAGARDE--TAREEEEEEEEEEEEEEEQEQDEYLEEDENEKERRL 143
F AR++ RE EE ++ ++E + E +L
Sbjct: 242 FTTAAREKKFIPREFNYSEELIDQLKKEHDS---AASLEQSLRVQL 284
>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}
Length = 524
Score = 25.7 bits (55), Expect = 4.8
Identities = 11/70 (15%), Positives = 25/70 (35%)
Query: 107 ETAREEEEEEEEEEEEEEEQEQDEYLEEDENEKERRLPEEDERGEDEEKKEEEEDKQGEE 166
T+R + E + + +L++ ++ LPE D + + + + +
Sbjct: 440 ATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDA 499
Query: 167 KRVEDKIGDE 176
E DE
Sbjct: 500 LMRELGASDE 509
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 24.5 bits (53), Expect = 5.1
Identities = 5/52 (9%), Positives = 22/52 (42%)
Query: 110 REEEEEEEEEEEEEEEQEQDEYLEEDENEKERRLPEEDERGEDEEKKEEEED 161
+ + ++E ++ E++Q +Y + + P++ ++ + +
Sbjct: 46 QRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSG 97
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 201
Score = 25.1 bits (55), Expect = 5.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 107 ETAREEEEEEEEEEEEEEEQEQDEYLEEDENEKERRLPEE 146
A+ E+ +E EEEE +++ D E LPEE
Sbjct: 118 GRAKLRIEKAMKEYEEEERKKRLGPGGLDPVEVYESLPEE 157
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 120
Score = 24.5 bits (53), Expect = 5.8
Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 107 ETAREEEEEEEEEEEEEEEQEQDEYLEEDENEKERRLPEEDE---RGEDEEKKEE--EED 161
+ A E ++ + ++Q + E + + R DEE + ++
Sbjct: 28 KKALEIVRHSKDPLAKFQKQSDVDLYAIKEFFLNPPVTDNYNLVWRDPDEEGILKFLCDE 87
Query: 162 KQGEEKRVEDKIGDEKRLEENKKKKTQKR 190
E+RV++ + +RL++ K Q
Sbjct: 88 HDFSEERVKNGL---ERLKKAIKSGKQST 113
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 24.7 bits (53), Expect = 7.4
Identities = 13/101 (12%), Positives = 43/101 (42%)
Query: 90 KKNILCENQLFKAGARDETAREEEEEEEEEEEEEEEQEQDEYLEEDENEKERRLPEEDER 149
E ++ + A A + E + + E+ ++++ +E + ++ + +
Sbjct: 199 LTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQ 258
Query: 150 GEDEEKKEEEEDKQGEEKRVEDKIGDEKRLEENKKKKTQKR 190
E+++ Q +E+ +++ E R+ +N+ + Q +
Sbjct: 259 LLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP
module {Pseudomonas putida [TaxId: 303]}
Length = 407
Score = 24.8 bits (53), Expect = 7.9
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 4/53 (7%)
Query: 96 ENQLFKAGARDETAREEEEEEEEEEEEEEEQEQDEYLEEDENEKERRLPEEDE 148
+ L K G E EE + E E + E+ +P
Sbjct: 339 KQHLIKIGHWSE----EEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAAS 387
>d1gsma2 b.1.1.4 (A:91-206) Mucosal addressin cell adhesion
molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 24.1 bits (52), Expect = 8.0
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 109 AREEEEEEEEEEEEEEEQE 127
A E +EEEEE + +E
Sbjct: 51 ALGPEVQEEEEEPQGDEDV 69
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 24.1 bits (52), Expect = 8.0
Identities = 13/64 (20%), Positives = 29/64 (45%)
Query: 104 ARDETAREEEEEEEEEEEEEEEQEQDEYLEEDENEKERRLPEEDERGEDEEKKEEEEDKQ 163
+ ++ EE + +++ + +E ++ +E L ER ++++K EE K
Sbjct: 74 EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN 133
Query: 164 GEEK 167
E K
Sbjct: 134 KELK 137
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.308 0.129 0.346
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 691,508
Number of extensions: 34272
Number of successful extensions: 459
Number of sequences better than 10.0: 1
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 100
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 50 (23.5 bits)