Query psy6893
Match_columns 988
No_of_seqs 455 out of 1025
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 21:10:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6893.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6893hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2062|consensus 100.0 1E-110 2E-115 958.9 34.3 516 3-729 137-701 (929)
2 KOG2062|consensus 100.0 8.8E-86 1.9E-90 753.9 30.9 317 558-904 277-593 (929)
3 COG5116 RPN2 26S proteasome re 100.0 4.7E-86 1E-90 737.2 16.7 484 29-729 169-698 (926)
4 KOG2005|consensus 100.0 3.7E-82 7.9E-87 717.2 19.3 488 44-665 229-752 (878)
5 COG5116 RPN2 26S proteasome re 100.0 4.8E-70 1.1E-74 608.9 20.6 401 470-906 171-592 (926)
6 COG5110 RPN1 26S proteasome re 100.0 6.1E-63 1.3E-67 550.4 24.3 489 44-666 231-754 (881)
7 KOG2005|consensus 100.0 6.1E-63 1.3E-67 560.9 17.9 344 538-900 305-674 (878)
8 COG5110 RPN1 26S proteasome re 100.0 4.2E-51 9.1E-56 455.9 18.8 345 539-900 307-675 (881)
9 PRK09687 putative lyase; Provi 98.7 1.4E-06 3.1E-11 96.7 22.6 131 639-788 145-275 (280)
10 PRK09687 putative lyase; Provi 98.6 1.9E-06 4.2E-11 95.6 19.8 37 852-890 241-277 (280)
11 PLN03200 cellulose synthase-in 98.3 0.00031 6.6E-09 94.1 31.7 184 333-545 100-313 (2102)
12 PRK13800 putative oxidoreducta 98.2 0.00012 2.7E-09 93.5 23.3 194 639-891 701-895 (897)
13 KOG1858|consensus 98.1 1.9E-05 4.1E-10 100.5 14.4 231 198-444 722-991 (1496)
14 PRK13800 putative oxidoreducta 98.1 0.00043 9.3E-09 88.6 24.4 120 641-775 761-880 (897)
15 PF01851 PC_rep: Proteasome/cy 98.0 5.6E-06 1.2E-10 63.4 4.1 34 355-388 1-34 (35)
16 PF01851 PC_rep: Proteasome/cy 97.7 5.2E-05 1.1E-09 58.1 4.2 30 714-743 1-30 (35)
17 TIGR02270 conserved hypothetic 97.4 0.0098 2.1E-07 69.7 20.7 152 641-820 136-288 (410)
18 KOG2002|consensus 97.4 0.82 1.8E-05 57.7 37.5 193 290-502 213-425 (1018)
19 KOG1858|consensus 97.4 0.0014 3.1E-08 84.1 13.4 223 671-895 882-1244(1496)
20 KOG4364|consensus 97.2 0.00085 1.8E-08 79.6 8.7 13 754-766 155-167 (811)
21 TIGR02270 conserved hypothetic 96.6 0.1 2.2E-06 61.3 18.5 208 657-897 87-298 (410)
22 COG1413 FOG: HEAT repeat [Ener 96.5 0.48 1.1E-05 53.6 23.1 151 638-808 165-315 (335)
23 PLN03200 cellulose synthase-in 96.3 2.2 4.8E-05 58.8 30.9 67 460-528 425-501 (2102)
24 COG1413 FOG: HEAT repeat [Ener 95.9 0.3 6.5E-06 55.3 17.6 155 656-830 43-208 (335)
25 PF13646 HEAT_2: HEAT repeats; 95.8 0.034 7.4E-07 49.9 7.6 87 374-498 2-88 (88)
26 PF13646 HEAT_2: HEAT repeats; 95.8 0.046 1E-06 49.1 8.2 71 698-776 3-73 (88)
27 TIGR02917 PEP_TPR_lipo putativ 95.6 9.1 0.0002 47.6 54.5 211 650-878 647-868 (899)
28 TIGR02917 PEP_TPR_lipo putativ 95.3 11 0.00024 46.9 53.2 212 649-879 578-802 (899)
29 KOG2572|consensus 94.1 0.022 4.7E-07 64.8 1.5 8 780-787 354-361 (498)
30 KOG1824|consensus 93.5 31 0.00067 44.3 26.6 230 636-890 833-1090(1233)
31 PTZ00121 MAEBL; Provisional 93.1 0.24 5.1E-06 64.0 8.2 22 388-409 718-739 (2084)
32 KOG0166|consensus 92.3 2.9 6.3E-05 50.3 15.4 208 696-905 111-361 (514)
33 PF01602 Adaptin_N: Adaptin N 92.3 12 0.00025 45.0 20.9 111 296-415 81-198 (526)
34 PF01602 Adaptin_N: Adaptin N 92.1 33 0.00071 41.1 29.5 104 634-740 278-387 (526)
35 smart00638 LPD_N Lipoprotein N 92.0 18 0.00039 44.4 22.4 100 636-743 460-561 (574)
36 KOG2573|consensus 91.6 0.11 2.5E-06 59.2 2.6 8 519-526 171-178 (498)
37 PTZ00266 NIMA-related protein 90.7 0.79 1.7E-05 59.4 9.1 11 461-471 91-101 (1021)
38 KOG2573|consensus 90.4 0.097 2.1E-06 59.7 0.6 10 778-787 366-375 (498)
39 KOG2171|consensus 90.4 71 0.0015 41.9 33.1 136 657-801 349-510 (1075)
40 KOG0166|consensus 90.2 24 0.00052 42.8 20.1 270 473-772 110-405 (514)
41 KOG1144|consensus 90.1 0.29 6.3E-06 60.0 4.2 7 801-807 112-118 (1064)
42 PRK11788 tetratricopeptide rep 90.0 30 0.00065 39.4 20.5 191 649-845 80-276 (389)
43 PTZ00121 MAEBL; Provisional 89.3 1 2.3E-05 58.6 8.3 24 351-374 715-738 (2084)
44 PF05004 IFRD: Interferon-rela 88.5 8.3 0.00018 43.9 14.2 31 864-895 227-257 (309)
45 PRK15174 Vi polysaccharide exp 88.3 81 0.0017 39.7 30.6 187 649-845 188-379 (656)
46 KOG1824|consensus 88.2 4 8.7E-05 51.7 12.0 239 268-525 791-1054(1233)
47 KOG1943|consensus 87.4 1.1E+02 0.0024 40.2 26.8 155 639-794 561-746 (1133)
48 COG5064 SRP1 Karyopherin (impo 87.3 8.6 0.00019 43.9 12.9 208 696-906 116-367 (526)
49 PF07946 DUF1682: Protein of u 87.0 1.1 2.5E-05 51.1 6.2 7 613-619 47-53 (321)
50 KOG0567|consensus 86.9 22 0.00049 39.5 15.5 190 694-897 67-282 (289)
51 KOG0163|consensus 86.7 1.9 4.1E-05 53.0 8.0 39 253-293 302-351 (1259)
52 KOG2171|consensus 86.2 4.1 8.9E-05 52.6 10.9 63 295-361 349-414 (1075)
53 COG5064 SRP1 Karyopherin (impo 85.3 38 0.00082 39.0 16.6 72 474-545 116-187 (526)
54 PRK11447 cellulose synthase su 84.8 1.6E+02 0.0034 39.7 36.1 458 350-881 24-529 (1157)
55 PTZ00429 beta-adaptin; Provisi 84.8 1.3E+02 0.0028 38.6 39.5 359 333-739 33-414 (746)
56 PF08208 RNA_polI_A34: DNA-dir 84.4 0.3 6.6E-06 51.7 0.0 9 866-874 78-86 (198)
57 PF01347 Vitellogenin_N: Lipop 84.0 80 0.0017 39.1 20.8 96 637-740 505-602 (618)
58 KOG3809|consensus 83.7 0.47 1E-05 54.8 1.1 6 882-887 124-129 (583)
59 KOG1029|consensus 83.0 4.5 9.7E-05 50.1 8.8 10 821-830 255-264 (1118)
60 COG5181 HSH155 U2 snRNP splice 82.4 12 0.00025 45.8 11.7 148 674-823 702-864 (975)
61 PF07946 DUF1682: Protein of u 82.2 2.9 6.4E-05 47.7 6.8 7 867-873 233-239 (321)
62 KOG0112|consensus 81.1 0.83 1.8E-05 57.1 2.0 11 250-260 219-229 (975)
63 KOG0163|consensus 79.4 7.3 0.00016 48.2 8.8 21 660-681 617-637 (1259)
64 PRK11788 tetratricopeptide rep 78.7 1.3E+02 0.0027 34.3 20.4 218 649-880 46-282 (389)
65 PRK00247 putative inner membra 78.4 8.2 0.00018 45.8 8.8 18 722-739 174-191 (429)
66 COG5240 SEC21 Vesicle coat com 78.4 1.8E+02 0.0039 36.0 28.6 23 577-599 211-233 (898)
67 KOG0345|consensus 77.7 3.6 7.9E-05 48.7 5.6 8 731-738 392-399 (567)
68 PF10278 Med19: Mediator of RN 75.3 0.57 1.2E-05 48.8 -1.5 32 837-872 39-70 (178)
69 PF10243 MIP-T3: Microtubule-b 73.8 2 4.3E-05 52.5 2.3 9 862-870 72-80 (539)
70 PRK15174 Vi polysaccharide exp 73.5 2.2E+02 0.0047 35.9 20.1 57 787-845 289-345 (656)
71 KOG4246|consensus 71.4 1.9 4.1E-05 53.4 1.3 9 864-872 776-784 (1194)
72 KOG2138|consensus 71.1 2.1 4.5E-05 52.3 1.6 21 46-66 70-90 (883)
73 PF02985 HEAT: HEAT repeat; I 70.4 6.4 0.00014 29.0 3.5 27 474-501 2-28 (31)
74 KOG2138|consensus 69.8 3.5 7.5E-05 50.5 3.0 7 898-904 788-794 (883)
75 KOG2270|consensus 69.7 1.9 4.1E-05 50.1 0.8 11 695-705 319-329 (520)
76 KOG0213|consensus 68.6 36 0.00078 42.7 11.0 167 695-890 926-1102(1172)
77 KOG0567|consensus 67.2 30 0.00065 38.6 9.2 108 674-796 170-281 (289)
78 smart00638 LPD_N Lipoprotein N 67.1 1.5E+02 0.0032 36.5 16.4 173 245-424 344-534 (574)
79 PRK12370 invasion protein regu 66.9 1.6E+02 0.0034 36.2 16.6 170 652-833 318-490 (553)
80 PF10243 MIP-T3: Microtubule-b 66.4 2.2 4.7E-05 52.2 0.4 7 879-885 74-80 (539)
81 KOG2891|consensus 65.3 34 0.00073 38.0 9.1 13 555-567 50-62 (445)
82 PF13513 HEAT_EZ: HEAT-like re 62.3 11 0.00024 31.1 3.8 44 676-720 3-53 (55)
83 PLN03076 ARF guanine nucleotid 62.1 16 0.00034 50.6 7.2 111 729-854 1644-1777(1780)
84 TIGR02521 type_IV_pilW type IV 61.5 1.8E+02 0.004 29.2 15.3 152 651-811 44-198 (234)
85 KOG4246|consensus 60.4 2.6 5.6E-05 52.3 -0.4 8 209-216 163-170 (1194)
86 PRK10049 pgaA outer membrane p 59.0 5E+02 0.011 33.4 31.2 162 648-811 282-456 (765)
87 PF13513 HEAT_EZ: HEAT-like re 58.2 8.8 0.00019 31.6 2.6 48 710-757 2-55 (55)
88 KOG1060|consensus 58.1 1.3E+02 0.0027 38.5 13.0 218 671-899 119-354 (968)
89 PF08229 SHR3_chaperone: ER me 57.2 4.9 0.00011 42.8 1.1 14 711-724 12-25 (196)
90 KOG2025|consensus 55.6 70 0.0015 40.1 10.3 114 764-909 80-203 (892)
91 PF08229 SHR3_chaperone: ER me 55.4 8.6 0.00019 41.0 2.5 8 714-721 66-73 (196)
92 KOG2357|consensus 54.7 19 0.0004 42.2 5.2 7 864-870 319-325 (440)
93 COG4499 Predicted membrane pro 54.1 15 0.00032 42.6 4.3 13 607-619 175-187 (434)
94 PRK12585 putative monovalent c 53.8 1.5E+02 0.0033 31.6 11.2 6 812-817 31-36 (197)
95 PF01347 Vitellogenin_N: Lipop 53.5 38 0.00082 41.9 8.1 197 608-812 383-605 (618)
96 COG5181 HSH155 U2 snRNP splice 53.1 45 0.00098 41.1 8.1 128 639-774 747-888 (975)
97 TIGR00990 3a0801s09 mitochondr 52.8 5.4E+02 0.012 31.9 19.7 13 460-472 199-211 (615)
98 KOG0213|consensus 52.6 45 0.00097 41.9 8.1 129 638-774 941-1083(1172)
99 KOG1059|consensus 52.3 74 0.0016 40.0 9.9 192 671-901 155-372 (877)
100 PRK09510 tolA cell envelope in 51.1 63 0.0014 38.1 8.8 13 779-791 8-20 (387)
101 TIGR00540 hemY_coli hemY prote 48.7 4.5E+02 0.0098 30.8 15.7 146 357-504 190-348 (409)
102 PF02985 HEAT: HEAT repeat; I 48.3 18 0.00039 26.6 2.6 26 868-894 3-28 (31)
103 KOG2891|consensus 46.6 1E+02 0.0022 34.5 8.9 8 767-774 223-230 (445)
104 COG4499 Predicted membrane pro 46.0 30 0.00064 40.3 5.0 10 821-830 284-293 (434)
105 cd05804 StaR_like StaR_like; a 45.1 4.9E+02 0.011 29.1 17.7 194 647-846 123-335 (355)
106 COG5240 SEC21 Vesicle coat com 44.0 1.2E+02 0.0027 37.3 9.7 183 681-899 208-411 (898)
107 PF05279 Asp-B-Hydro_N: Aspart 43.8 53 0.0011 36.3 6.4 38 848-886 24-62 (243)
108 TIGR00990 3a0801s09 mitochondr 43.2 7.4E+02 0.016 30.7 20.4 151 650-811 343-496 (615)
109 KOG2809|consensus 43.0 15 0.00031 42.0 2.0 10 657-666 29-38 (326)
110 smart00435 TOPEUc DNA Topoisom 42.0 90 0.0019 36.8 8.2 37 624-665 70-106 (391)
111 PRK04195 replication factor C 40.5 17 0.00037 43.8 2.2 10 579-588 187-196 (482)
112 PTZ00429 beta-adaptin; Provisi 39.9 9.5E+02 0.021 31.1 32.0 92 296-394 107-202 (746)
113 PF05004 IFRD: Interferon-rela 39.4 1.6E+02 0.0034 33.7 9.6 130 349-502 56-215 (309)
114 KOG2809|consensus 39.0 14 0.00029 42.2 1.0 16 873-888 159-174 (326)
115 PF13428 TPR_14: Tetratricopep 38.6 67 0.0014 25.2 4.7 38 73-110 4-41 (44)
116 TIGR02521 type_IV_pilW type IV 38.5 4.2E+02 0.0091 26.5 15.9 131 674-809 27-162 (234)
117 TIGR03302 OM_YfiO outer membra 37.2 3.3E+02 0.0072 28.7 11.3 75 648-725 43-119 (235)
118 PRK09782 bacteriophage N4 rece 37.2 1.2E+03 0.025 31.3 19.4 183 650-846 521-705 (987)
119 KOG3598|consensus 36.9 3.4 7.4E-05 54.0 -4.4 32 810-843 1631-1662(2220)
120 COG5096 Vesicle coat complex, 35.5 98 0.0021 39.5 7.7 91 296-393 94-188 (757)
121 PF12755 Vac14_Fab1_bd: Vacuol 35.5 1.3E+02 0.0027 28.6 6.8 71 676-748 2-85 (97)
122 PF01122 Cobalamin_bind: Eukar 35.2 7E+02 0.015 29.0 13.8 129 358-507 53-204 (326)
123 cd06561 AlkD_like A new struct 35.1 5.2E+02 0.011 26.6 12.7 76 803-908 108-183 (197)
124 cd00020 ARM Armadillo/beta-cat 34.2 82 0.0018 29.0 5.4 63 657-724 8-78 (120)
125 KOG3598|consensus 33.7 4 8.7E-05 53.4 -4.6 22 361-382 1085-1106(2220)
126 cd05804 StaR_like StaR_like; a 33.6 7.2E+02 0.016 27.8 14.7 24 643-666 48-71 (355)
127 PRK09782 bacteriophage N4 rece 33.4 1.1E+03 0.023 31.7 16.8 155 648-812 552-707 (987)
128 KOG1058|consensus 33.2 2.1E+02 0.0046 36.4 9.6 66 367-432 309-379 (948)
129 PRK15359 type III secretion sy 32.5 3.6E+02 0.0078 26.8 10.0 29 848-880 97-125 (144)
130 KOG2507|consensus 31.8 83 0.0018 37.2 5.7 16 724-739 61-76 (506)
131 KOG1078|consensus 30.7 1.3E+03 0.028 29.9 28.2 103 371-505 22-132 (865)
132 PRK10370 formate-dependent nit 30.6 4.8E+02 0.01 27.5 11.0 23 864-886 161-183 (198)
133 PF12569 NARP1: NMDA receptor- 30.4 36 0.00077 41.7 2.7 41 393-437 43-83 (517)
134 PF13174 TPR_6: Tetratricopept 29.4 58 0.0013 23.1 2.7 26 73-98 3-28 (33)
135 PF14559 TPR_19: Tetratricopep 29.3 1.1E+02 0.0024 25.6 4.9 30 73-102 28-57 (68)
136 KOG2153|consensus 28.9 5.6E+02 0.012 32.3 12.1 15 860-874 358-372 (704)
137 cd00020 ARM Armadillo/beta-cat 28.6 3.4E+02 0.0073 24.8 8.5 27 473-500 92-118 (120)
138 KOG1060|consensus 28.5 1.4E+03 0.031 29.7 18.2 235 656-903 180-466 (968)
139 PF12348 CLASP_N: CLASP N term 28.4 3.9E+02 0.0085 28.2 10.0 31 471-501 175-205 (228)
140 smart00786 SHR3_chaperone ER m 28.1 42 0.0009 35.8 2.4 8 714-721 66-73 (196)
141 PRK15363 pathogenicity island 28.0 3.3E+02 0.0072 28.2 8.8 42 849-891 109-151 (157)
142 KOG2874|consensus 28.0 65 0.0014 36.0 3.9 34 831-865 167-200 (356)
143 KOG2023|consensus 27.9 2.8E+02 0.0061 35.0 9.4 55 312-366 369-423 (885)
144 PF09976 TPR_21: Tetratricopep 27.8 4.6E+02 0.01 25.8 9.8 117 750-870 13-141 (145)
145 TIGR02552 LcrH_SycD type III s 27.4 3.7E+02 0.0079 25.5 8.8 61 750-810 19-79 (135)
146 KOG1248|consensus 27.4 7.4E+02 0.016 33.3 13.4 163 720-899 687-860 (1176)
147 PF12348 CLASP_N: CLASP N term 27.1 7.6E+02 0.016 26.0 12.3 26 697-722 133-158 (228)
148 PTZ00399 cysteinyl-tRNA-synthe 26.8 72 0.0016 40.2 4.6 21 880-900 521-541 (651)
149 PF14668 RICTOR_V: Rapamycin-i 26.1 88 0.0019 28.3 3.7 33 470-502 26-58 (73)
150 PF13904 DUF4207: Domain of un 25.6 2.6E+02 0.0056 31.2 8.2 82 907-988 112-219 (264)
151 KOG1517|consensus 25.5 1.9E+02 0.004 38.2 7.6 88 386-498 573-667 (1387)
152 KOG1241|consensus 25.0 1.6E+03 0.035 29.1 22.7 165 313-504 343-532 (859)
153 COG5096 Vesicle coat complex, 24.8 1.8E+02 0.0038 37.3 7.3 76 670-749 102-184 (757)
154 PRK12370 invasion protein regu 24.7 1.4E+03 0.029 28.1 17.8 123 719-845 344-468 (553)
155 PF06936 Selenoprotein_S: Sele 23.5 1.7E+02 0.0037 31.3 5.9 6 897-902 74-79 (190)
156 PF08713 DNA_alkylation: DNA a 23.4 3.1E+02 0.0066 28.7 8.0 147 729-907 50-196 (213)
157 KOG1058|consensus 23.2 1.4E+03 0.031 29.6 14.1 230 574-846 117-362 (948)
158 smart00786 SHR3_chaperone ER m 23.2 46 0.001 35.5 1.6 16 711-726 12-27 (196)
159 KOG3252|consensus 23.1 69 0.0015 34.0 2.9 33 49-82 55-89 (217)
160 TIGR03302 OM_YfiO outer membra 22.3 8.7E+02 0.019 25.5 11.3 27 458-484 206-232 (235)
161 PF00514 Arm: Armadillo/beta-c 21.8 1.3E+02 0.0029 23.1 3.7 29 472-501 12-40 (41)
162 KOG0915|consensus 21.8 2.4E+03 0.051 29.9 29.6 228 338-601 820-1100(1702)
163 TIGR01069 mutS2 MutS2 family p 21.8 4.8E+02 0.01 33.7 10.6 13 861-873 482-494 (771)
164 KOG2072|consensus 21.5 3.1E+02 0.0068 35.3 8.3 26 72-98 73-98 (988)
165 PF10147 CR6_interact: Growth 21.5 5.5E+02 0.012 28.1 9.3 84 898-981 98-206 (217)
166 KOG1156|consensus 21.5 1.7E+02 0.0036 36.6 6.0 31 394-424 225-255 (700)
167 PF11208 DUF2992: Protein of u 21.1 1.2E+02 0.0026 30.5 4.0 14 895-908 64-77 (132)
168 PF03130 HEAT_PBS: PBS lyase H 20.8 1.6E+02 0.0034 21.1 3.5 25 353-381 2-26 (27)
169 KOG0526|consensus 20.4 32 0.00069 41.5 -0.2 11 798-808 436-446 (615)
170 PF13181 TPR_8: Tetratricopept 20.1 1.5E+02 0.0033 21.2 3.6 26 73-98 4-29 (34)
No 1
>KOG2062|consensus
Probab=100.00 E-value=9.7e-111 Score=958.90 Aligned_cols=516 Identities=50% Similarity=0.792 Sum_probs=451.5
Q ss_pred HHHHHHHhcCCCC---Cc---cccCCC---CCCCCCChhhhhhhhhhhhhhcccccChHHHHHHHHHHHHHHhcCCcccH
Q psy6893 3 VFEAAIKQMTPPR---SF---TTRSRW---PCPPFSRVHSALKSCVPWCLAMSSIQSRSFRAQILRTLVRLYHSLSVPDY 73 (988)
Q Consensus 3 ~~~~~~~~~~~~~---~~---~~~~~~---~~~~~~~~~~~L~y~~~~~~~~~~v~~~~fR~~vL~lL~~ly~~~~~pDy 73 (988)
||.+|+. -++.+ |. |+|+|- --+++.++..++.|+++ ++|++|+|++||++||+++++.|+.+++|||
T Consensus 137 mi~kcl~-d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~--l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy 213 (929)
T KOG2062|consen 137 MIQKCLD-DNEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLE--LLISLVNNREFRNKVLRLLVKTYLKLPSPDY 213 (929)
T ss_pred HHHHhhh-hhHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHccCCCCCe
Confidence 6677776 55555 33 788877 35677788888999999 5599999999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhcCCCCchhHHHHHHHhhcccccHHHHHHHHHhhcccCCCCCCCccccccCCCCCCC
Q psy6893 74 VNMAQCWIYLDDPRSVANLLGKLVAGSADDDLMAAQIGFDLYESATQAFLASVLQELKTCAPIPDATHVVVKVPVEGAPT 153 (988)
Q Consensus 74 ~~~~qc~~~Lnd~~~va~il~~L~~~~~~~~l~ayQiaFdL~~~~~Q~fl~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (988)
+++|||+++||||+.|+++|.+|++ +++.++||||||||+|+++|+||..|++.|+.+ .
T Consensus 214 ~~vc~c~v~Ldd~~~va~ll~kL~~--e~~~llayQIAFDL~esasQefL~~v~~~l~~d-~------------------ 272 (929)
T KOG2062|consen 214 FSVCQCYVFLDDAEAVADLLEKLVK--EDDLLLAYQIAFDLYESASQEFLDSVLDRLPAD-D------------------ 272 (929)
T ss_pred eeeeeeeEEcCCHHHHHHHHHHHHh--cchhhhHHHHHHHHhhccCHHHHHHHHHHcccc-c------------------
Confidence 9999999999999999999999998 466899999999999999999999999999742 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhhhcccCccchhhHHHHhhhcccchHHhHHhhh
Q psy6893 154 PATPDTEAPTPAPGTESGPSSTTPGPETKTLESLNEKEKQLQARITKLSKILSGEVSIDLHLQFLIRSNKTDMLILKNTK 233 (988)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IL~g~~~~~l~~~fL~~~n~~d~~iL~~~k 233 (988)
. +++ ..+.++++||+|++++++|++||++||+||+.||+++|
T Consensus 273 -----~--------~de-------------------------~p~~kii~ILSGe~tik~~l~FL~~~N~tD~~iL~~iK 314 (929)
T KOG2062|consen 273 -----A--------RDE-------------------------KPMEKIISILSGEETIKLYLQFLLRHNNTDLLILEEIK 314 (929)
T ss_pred -----c--------ccc-------------------------ChHHHHHHHhcCchHHHHHHHHHHHcCCchHHHHHHHH
Confidence 0 000 01578999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHhhhccCCcccccccchhHHHhhccchhhHHhhhccceecCChHHHHHHHhcccCCCCCCCCCc
Q psy6893 234 ESIRVSICHTATIIANAFMHSGTTSDQFLRDNLEWLARATNWAKLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGY 313 (988)
Q Consensus 234 ~s~r~s~~~~A~~~~Naf~naG~~~D~fl~~n~~Wl~k~~~~~~~sAtASLG~Ih~~~~~~gl~~l~~yL~s~~~~~~~y 313 (988)
+++|+|+||+|++|+|||||+|||+|+|+|+|++|+.|++||+||||||||||||+||..+|+++|.+|||+++++++.|
T Consensus 315 ~s~r~sv~H~A~~iAN~fMh~GTT~D~FlR~NL~WlskAtNWaKFtAtAsLGvIH~G~~~~~~~ll~pYLP~~~~~~s~y 394 (929)
T KOG2062|consen 315 ESVRNSVCHTATLIANAFMHAGTTSDTFLRNNLDWLSKATNWAKFTATASLGVIHRGHENQAMKLLAPYLPKEAGEGSGY 394 (929)
T ss_pred HHHHHhhhhHHHHHHHHHHhcCCcchHHHHhchhHHhhcchHhhhhhhhhcceeeccccchHHHHhhhhCCccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred cchhHHHHHhhhccCCCCchhHHHHHHhhhhc--------------------------------CCCchhHHHHHHHHHH
Q psy6893 314 YEGGGLYALGLIHANHGAVINDYLLGQVKDAT--------------------------------NEDDAVTGEAAGIAMG 361 (988)
Q Consensus 314 ~~~GaL~alGli~~g~~~~~~d~l~~lL~~~~--------------------------------~~d~~~~~~aA~lglG 361 (988)
++||||||+||||+||+....+||+..|++.. ..|+++.|+||++|||
T Consensus 395 ~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MG 474 (929)
T KOG2062|consen 395 KEGGALYALGLIHANHGRGITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMG 474 (929)
T ss_pred cccchhhhhhccccCcCccHHHHHHHHHHhccchhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhh
Confidence 99999999999999999889999988665543 3699999999999999
Q ss_pred HhhccCCChhHHHHHHHhhhhcchHHHHHHHHHHHHHHhcCChhhHHHHHHHHhhcchhhhhccchhHHHHHhhhhhhhc
Q psy6893 362 LVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCVSYLYF 441 (988)
Q Consensus 362 L~~~Gs~~~~~~~~L~~~~~dt~~E~~~r~lalgl~~v~~g~~e~a~~li~~L~~~~d~~lr~~~~~~~~l~l~Lgll~~ 441 (988)
|+|+||.+.+++++|+.|+++||||+|+||+++|++++.||++|.++.+|..|+.++||+||++
T Consensus 475 l~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~---------------- 538 (929)
T KOG2062|consen 475 LLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYG---------------- 538 (929)
T ss_pred hHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhh----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cccchhhHHhhccchhHHHHHhhhccCCCHHHHHHHHHHhccCCCchhhHHHHHHHHHHhhcCccccccccCCCCchhHH
Q psy6893 442 DLFSDLTYRIVKNRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRTLFYVAPACTRSPWPGVI 521 (988)
Q Consensus 442 g~~~e~~l~~~~~~~~~~~~~~AYaGTGN~~~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~~~~~~~~g~~~~~~~~p~ai 521 (988)
|+|+.++||+||||+.+|++|||++|||++|||||+||++||||++++| ..+|..+
T Consensus 539 ---------------Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp---------~~~~s~V 594 (929)
T KOG2062|consen 539 ---------------GMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP---------EQLPSTV 594 (929)
T ss_pred ---------------hHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecCh---------hhchHHH
Confidence 6779999999999999999999999999999999999999999999999 7889999
Q ss_pred hhccchhhhhhHhhHHHhhhhcccCCCCchhhHHHHHHHHHhhhccCCchhHHHHHHHHHhcCCchHHHHHhhhhhhhhh
Q psy6893 522 SLLDDPMIELKEFSLKKLNDIVDDFWPENEKEKQLQARITKLSKILSGEVSIDLHLQFLIRSNKTDMLILKNTKESIRVS 601 (988)
Q Consensus 522 ~lL~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~Il~g~~~~~l~l~fL~~~n~tD~~il~~~kds~r~s 601 (988)
++|++.- |.. +|
T Consensus 595 ~lLses~-------------------------------------------------------N~H-----------VR-- 606 (929)
T KOG2062|consen 595 SLLSESY-------------------------------------------------------NPH-----------VR-- 606 (929)
T ss_pred HHHhhhc-------------------------------------------------------Chh-----------hh--
Confidence 8888322 000 13
Q ss_pred hhhhHHHHHHHHhhcCCCchhhhcchhHHHHhhcccchhhhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHH
Q psy6893 602 ICHTATIIANAFMHSGTTSDQFLRDNLEWLARATNWAKLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGL 681 (988)
Q Consensus 602 ~~h~A~~~ana~~naGt~~D~flr~~~~wl~k~~~w~kfsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL 681 (988)
.++.+|.|+.-||||+ .+++.+|+|..+ ...+|+|-||+
T Consensus 607 ---yGaA~ALGIaCAGtG~----------------------------------~eAi~lLepl~~----D~~~fVRQgAl 645 (929)
T KOG2062|consen 607 ---YGAAMALGIACAGTGL----------------------------------KEAINLLEPLTS----DPVDFVRQGAL 645 (929)
T ss_pred ---hhHHHHHhhhhcCCCc----------------------------------HHHHHHHhhhhc----ChHHHHHHHHH
Confidence 2567888888888884 157888888874 44579999999
Q ss_pred HHHhhhccCCchH-------HHHHHHHHhhh-cCchhhHHHHHHhhHhhhcCCCCH
Q psy6893 682 YALGLIHANHGAV-------INDYLLGQVKD-ATNEMVRHGGCLGLGLAAMGSARD 729 (988)
Q Consensus 682 ~AlGlI~ag~~~~-------~~~~Ll~~l~~-s~~~~ir~gA~LGLGla~~Gs~~~ 729 (988)
.|+++|..-+-+. ....|...+.+ +.+.....||||+=|+.-+|-+|.
T Consensus 646 Ia~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK~GAilAqGildaGGrNv 701 (929)
T KOG2062|consen 646 IALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMAKFGAILAQGILDAGGRNV 701 (929)
T ss_pred HHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhcCCceE
Confidence 9999997765331 23333322222 123478888888888888887775
No 2
>KOG2062|consensus
Probab=100.00 E-value=8.8e-86 Score=753.94 Aligned_cols=317 Identities=65% Similarity=1.056 Sum_probs=310.7
Q ss_pred HHHHHhhhccCCchhHHHHHHHHHhcCCchHHHHHhhhhhhhhhhhhhHHHHHHHHhhcCCCchhhhcchhHHHHhhccc
Q psy6893 558 ARITKLSKILSGEVSIDLHLQFLIRSNKTDMLILKNTKESIRVSICHTATIIANAFMHSGTTSDQFLRDNLEWLARATNW 637 (988)
Q Consensus 558 ~~~~~l~~Il~g~~~~~l~l~fL~~~n~tD~~il~~~kds~r~s~~h~A~~~ana~~naGt~~D~flr~~~~wl~k~~~w 637 (988)
..++++++||+|++++++|++||+++|+||+.||+.+|++.|+|+||+|+++||||||+||++|+|+|+|++|+.|++||
T Consensus 277 ~p~~kii~ILSGe~tik~~l~FL~~~N~tD~~iL~~iK~s~r~sv~H~A~~iAN~fMh~GTT~D~FlR~NL~WlskAtNW 356 (929)
T KOG2062|consen 277 KPMEKIISILSGEETIKLYLQFLLRHNNTDLLILEEIKESVRNSVCHTATLIANAFMHAGTTSDTFLRNNLDWLSKATNW 356 (929)
T ss_pred ChHHHHHHHhcCchHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCcchHHHHhchhHHhhcchH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcCchhhHHHHHH
Q psy6893 638 AKLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEMVRHGGCL 717 (988)
Q Consensus 638 ~kfsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~~~~ir~gA~L 717 (988)
+||+||||||+||+||..+|+++|.||||++..+++.|++|||||||||||+|||.++++||+++|++.+++++|||+||
T Consensus 357 aKFtAtAsLGvIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cL 436 (929)
T KOG2062|consen 357 AKFTATASLGVIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENEVVRHGACL 436 (929)
T ss_pred hhhhhhhhcceeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCccHHHHHHHHHHhccchhhhhhhhh
Confidence 99999999999999999999999999999877778999999999999999999999999999999999999999999999
Q ss_pred hhHhhhcCCCCHHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCC
Q psy6893 718 GLGLAAMGSARDDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQ 797 (988)
Q Consensus 718 GLGla~~Gs~~~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr 797 (988)
||||+.|||+|+++|+.|+.++|.|+++++|+|+++|||+|+||.|.+++++|++|.+||||++|.|++++||+|+.|||
T Consensus 437 GlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr 516 (929)
T KOG2062|consen 437 GLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGR 516 (929)
T ss_pred hccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHHhhhhhhhhhhhccCCCchHHHHHhhhhhccC
Q psy6893 798 LENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAILRRSGMYTIAMAYCGSGSNVATKRLLHVAVSD 877 (988)
Q Consensus 798 ~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~~~lG~alia~g~~~tgn~~air~ll~~~~sd 877 (988)
|+++|.+|+.|..++||++||++||++++||+| |||+.|||+|||+++||
T Consensus 517 qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~G------------------------------Tgnnkair~lLh~aVsD 566 (929)
T KOG2062|consen 517 QEDADPLIKELLRDKDPILRYGGMYTLALAYVG------------------------------TGNNKAIRRLLHVAVSD 566 (929)
T ss_pred hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhc------------------------------cCchhhHHHhhcccccc
Confidence 999999999999999999999999999999999 99999999999999999
Q ss_pred CChhhhhhHHhhhhhhhhhhhhhhHhh
Q psy6893 878 VNDDVRREAVTALGFILFRKKRTRRKK 904 (988)
Q Consensus 878 ~~~~vrraa~~alg~i~~~npeq~pk~ 904 (988)
+||||||+|++++|||++++|+++|..
T Consensus 567 ~nDDVrRaAVialGFVl~~dp~~~~s~ 593 (929)
T KOG2062|consen 567 VNDDVRRAAVIALGFVLFRDPEQLPST 593 (929)
T ss_pred cchHHHHHHHHHheeeEecChhhchHH
Confidence 999999999999999999999977553
No 3
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-86 Score=737.19 Aligned_cols=484 Identities=38% Similarity=0.596 Sum_probs=408.8
Q ss_pred CChhhhhhhhhhhhhhcccccChHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHcCChHHHHHHHHHhhcCCCCc-hhHH
Q psy6893 29 SRVHSALKSCVPWCLAMSSIQSRSFRAQILRTLVRLYHSLSVPDYVNMAQCWIYLDDPRSVANLLGKLVAGSADD-DLMA 107 (988)
Q Consensus 29 ~~~~~~L~y~~~~~~~~~~v~~~~fR~~vL~lL~~ly~~~~~pDy~~~~qc~~~Lnd~~~va~il~~L~~~~~~~-~l~a 107 (988)
.+..++.+|.++ +++++|.+.+||++|||.|.+++...++||||.+-+|+++|||.+.+..+|.+|++. +| .+-|
T Consensus 169 ~~d~di~~ylL~--Lait~v~~~~fr~~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~e--nd~~l~a 244 (926)
T COG5116 169 GNDCDIINYLLD--LAITLVEEEGFRKEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVKE--NDLLLYA 244 (926)
T ss_pred CCcccHHHHHHH--HHHHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHhh--hhhhhhh
Confidence 345568999999 669999999999999999999999999999999999999999999999999999863 34 3445
Q ss_pred HHHHHhhcccccHHHHHHHHHhhcccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchh
Q psy6893 108 AQIGFDLYESATQAFLASVLQELKTCAPIPDATHVVVKVPVEGAPTPATPDTEAPTPAPGTESGPSSTTPGPETKTLESL 187 (988)
Q Consensus 108 yQiaFdL~~~~~Q~fl~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (988)
|+||||.++++|+|++- |+.. .... +.
T Consensus 245 -qvAFdledsasqe~lei----l~t~---------------------~vA~-------------------~~-------- 271 (926)
T COG5116 245 -QVAFDLEDSASQEILEI----LVTE---------------------LVAQ-------------------GY-------- 271 (926)
T ss_pred -hheehhccccCHHHHHh----ccch---------------------hhhc-------------------cc--------
Confidence 99999999999999963 2210 0000 01
Q ss_pred hHHHHHHHHHHHHhhhcccCccchhhHHHHhhhcccchHHhHHhhhhhh--hhhhhhhHHHHHHHhhhccCCcccccccc
Q psy6893 188 NEKEKQLQARITKLSKILSGEVSIDLHLQFLIRSNKTDMLILKNTKESI--RVSICHTATIIANAFMHSGTTSDQFLRDN 265 (988)
Q Consensus 188 ~~~~~~~~~~~~~~~~IL~g~~~~~l~~~fL~~~n~~d~~iL~~~k~s~--r~s~~~~A~~~~Naf~naG~~~D~fl~~n 265 (988)
-+++++||||+.+.+++..||+.+|+||+.+|+++|+|+ |+|+.|+|.+|+|+|||+||++|.|+|+|
T Consensus 272 ----------d~av~~ILSGe~t~ky~~~FLl~~nntd~~~Ln~sk~sl~~k~s~fH~avs~AN~fMn~GTs~dsf~r~N 341 (926)
T COG5116 272 ----------DQAVMSILSGEFTKKYLGAFLLEKNNTDFKFLNSSKSSLARKFSRFHYAVSLANSFMNLGTSNDSFYRNN 341 (926)
T ss_pred ----------cHHHHHHhcCcchhHHHHHHHHhcCCcceeehhcchhhhhhhhhhhhhHHHHHHHHhhcCCCcchHhhcC
Confidence 035999999999999999999999999999999999998 78999999999999999999999999999
Q ss_pred hhHHHhhccchhhHHhhhccceecCChHHHHHHHhcccCCCCCCCCCccchhHHHHHhhhccCCCCchhHHHHHH-----
Q psy6893 266 LEWLARATNWAKLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQ----- 340 (988)
Q Consensus 266 ~~Wl~k~~~~~~~sAtASLG~Ih~~~~~~gl~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~~~~~d~l~~l----- 340 (988)
++|++|++||+||||||||||||+||..+|.++|.||||++. .++.|++||||||+|||++|++....+|++..
T Consensus 342 l~wlgka~nWaKFtatAslGvIH~gn~n~~~~il~pYLP~e~-ass~~~eGGalyalGLI~Agfgr~~TeYL~e~~~~te 420 (926)
T COG5116 342 LDWLGKASNWAKFTATASLGVIHLGNSNPGYEILKPYLPSEV-ASSRQKEGGALYALGLIKAGFGREDTEYLLEYFLDTE 420 (926)
T ss_pred chhhhhcchHhhhhhhhhceeEeeccCCchhHhhhccCCccc-chhhhccCceeeeehhhccCcCcccHHHHHHHhCccc
Confidence 999999999999999999999999999999999999999863 36889999999999999999998788888752
Q ss_pred ------------------------------hhhhcCCCchhHHHHHHHHHHHhhccCCChhHHHHHHHhhhhcchHHHHH
Q psy6893 341 ------------------------------VKDATNEDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILR 390 (988)
Q Consensus 341 ------------------------------L~~~~~~d~~~~~~aA~lglGL~~~Gs~~~~~~~~L~~~~~dt~~E~~~r 390 (988)
|++.+.+|+++.++||++||||.|+||+..++|++|..|+++||||+|.|
T Consensus 421 De~~~~l~yG~~LGiGL~~MgSan~eiye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s~eai~dm~tya~ETqhe~i~R 500 (926)
T COG5116 421 DELTPELAYGVCLGIGLINMGSANREIYEKLKELLKNDRALLGEAAVYGMGLLMLGTWSVEAIEDMRTYAGETQHERIKR 500 (926)
T ss_pred ccccHHHHHHHHhhhcchhcccccHHHHHHHHHHHhcchhhhhhhhhhccceeeecCCCHHHHHHHHHHhcchhhhhHHh
Confidence 44445579999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhcchhhhhccchhHHHHHhhhhhhhccccchhhHHhhccchhHHHHHhhhccCCC
Q psy6893 391 GLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCVSYLYFDLFSDLTYRIVKNRSGMYTIAMAYCGSGS 470 (988)
Q Consensus 391 ~lalgl~~v~~g~~e~a~~li~~L~~~~d~~lr~~~~~~~~l~l~Lgll~~g~~~e~~l~~~~~~~~~~~~~~AYaGTGN 470 (988)
++++|+++|.||+||.++.+|..|+.++|+++|++ |+|..++|||||||
T Consensus 501 glgig~aLi~ygrqe~add~I~ell~d~ds~lRy~-------------------------------G~fs~alAy~GTgn 549 (926)
T COG5116 501 GLGIGFALILYGRQEMADDYINELLYDKDSILRYN-------------------------------GVFSLALAYVGTGN 549 (926)
T ss_pred hhhhhhhHhhhhhHHHHHHHHHHHhcCchHHhhhc-------------------------------cHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999997 56789999999999
Q ss_pred HHHHHHHHHHhccCCCchhhHHHHHHHHHHhhcCccccccccCCCCchhHHhhccchhhhhhHhhHHHhhhhcccCCCCc
Q psy6893 471 NVATKRLLHVAVSDVNDDVRREAVTALGFILFRTLFYVAPACTRSPWPGVISLLDDPMIELKEFSLKKLNDIVDDFWPEN 550 (988)
Q Consensus 471 ~~~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~~~~~~~~g~~~~~~~~p~ai~lL~~~~~~~~~~~~~~l~~~~~~~~~~~ 550 (988)
..+|+.|||++++|.+|||||+||++||||+++++ ..+|.-+.+|++. ||+
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~s----------------hN~---- 600 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSES----------------HNF---- 600 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhc----------------cch----
Confidence 99999999999999999999999999999999987 5666666665511 110
Q ss_pred hhhHHHHHHHHHhhhccCCchhHHHHHHHHHhcCCchHHHHHhhhhhhhhhhhhhHHHHHHHHhhcCCCchhhhcchhHH
Q psy6893 551 EKEKQLQARITKLSKILSGEVSIDLHLQFLIRSNKTDMLILKNTKESIRVSICHTATIIANAFMHSGTTSDQFLRDNLEW 630 (988)
Q Consensus 551 ~~~~~~~~~~~~l~~Il~g~~~~~l~l~fL~~~n~tD~~il~~~kds~r~s~~h~A~~~ana~~naGt~~D~flr~~~~w 630 (988)
| +| .++.||.|+.-+|+|..
T Consensus 601 -------------------------h---------------------VR-----~g~AvaLGiacag~G~~--------- 620 (926)
T COG5116 601 -------------------------H---------------------VR-----AGVAVALGIACAGTGDK--------- 620 (926)
T ss_pred -------------------------h---------------------hh-----hhhHHHhhhhhcCCccH---------
Confidence 0 12 14556777777777631
Q ss_pred HHhhcccchhhhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch-------HHHHHHHHHh
Q psy6893 631 LARATNWAKLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA-------VINDYLLGQV 703 (988)
Q Consensus 631 l~k~~~w~kfsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~-------~~~~~Ll~~l 703 (988)
.++.+|++..+ ...+++|.||+.|+|.|-.-+.. .++.-+.+-+
T Consensus 621 -------------------------~a~diL~~L~~----D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI 671 (926)
T COG5116 621 -------------------------VATDILEALMY----DTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVI 671 (926)
T ss_pred -------------------------HHHHHHHHHhh----CcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHH
Confidence 35667777765 45678888888888888665532 2344443333
Q ss_pred hhc-CchhhHHHHHHhhHhhhcCCCCH
Q psy6893 704 KDA-TNEMVRHGGCLGLGLAAMGSARD 729 (988)
Q Consensus 704 ~~s-~~~~ir~gA~LGLGla~~Gs~~~ 729 (988)
.+. .+-....|||++=|+.-+|-+|-
T Consensus 672 ~~Khe~glaklGA~laqGi~~aGGRNv 698 (926)
T COG5116 672 VDKHESGLAKLGAVLAQGISEAGGRNV 698 (926)
T ss_pred hhhhHhHHHHHHHHHHhhhhhcCCceE
Confidence 222 23377888888888888887664
No 4
>KOG2005|consensus
Probab=100.00 E-value=3.7e-82 Score=717.25 Aligned_cols=488 Identities=19% Similarity=0.260 Sum_probs=427.8
Q ss_pred hcccccChHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHcCChHHHHHHHHHhhcCCCCchhHHHHHHHhhcccccHHHH
Q psy6893 44 AMSSIQSRSFRAQILRTLVRLYHSLSVPDYVNMAQCWIYLDDPRSVANLLGKLVAGSADDDLMAAQIGFDLYESATQAFL 123 (988)
Q Consensus 44 ~~~~v~~~~fR~~vL~lL~~ly~~~~~pDy~~~~qc~~~Lnd~~~va~il~~L~~~~~~~~l~ayQiaFdL~~~~~Q~fl 123 (988)
|..+++.|+ ..-+||+...+|.+|.. |.+..+|+++|||.+.|.++|..+ .|+++..|+||.|.+ +|.|+
T Consensus 229 c~~~lP~Pd-d~~ll~~a~~IYlKf~~--~~~al~~ai~l~~~~~v~~vf~s~-----~D~~~kKQ~~ymLaR--~~i~~ 298 (878)
T KOG2005|consen 229 CVPLLPGPD-DVALLRTALKIYLKFNE--YPRALVGAIRLDDMKEVKEVFTSC-----TDPLLKKQMAYMLAR--HGIYF 298 (878)
T ss_pred HhhcCCCch-hhHHHHHHHHHHHHHHH--hHHHHHHHHhcCcHHHHHHHHHhc-----cCHHHHHHHHHHHHh--cCCce
Confidence 457888888 78899999999999885 999999999999999999999999 899999999999988 77777
Q ss_pred HHHHHhhcccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhhh
Q psy6893 124 ASVLQELKTCAPIPDATHVVVKVPVEGAPTPATPDTEAPTPAPGTESGPSSTTPGPETKTLESLNEKEKQLQARITKLSK 203 (988)
Q Consensus 124 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (988)
+ +.+. ++..++. + |.+-+++|..++|+++
T Consensus 299 e-----~~~~--------------------------e~l~di~----------------s----N~~Lse~f~~LarELe 327 (878)
T KOG2005|consen 299 E-----LSED--------------------------EELQDIL----------------S----NGKLSEHFLYLARELE 327 (878)
T ss_pred e-----cCcC--------------------------HHHHHHH----------------c----cccHHHHHHHHHHHhc
Confidence 5 2110 0000111 1 1234679999999999
Q ss_pred cccCccchhhHHHHhhhcccchHHhHHhhhhhhhhhhhhhHHHHHHHhhhccCCcccccccch----hHHHhhccchhhH
Q psy6893 204 ILSGEVSIDLHLQFLIRSNKTDMLILKNTKESIRVSICHTATIIANAFMHSGTTSDQFLRDNL----EWLARATNWAKLT 279 (988)
Q Consensus 204 IL~g~~~~~l~~~fL~~~n~~d~~iL~~~k~s~r~s~~~~A~~~~Naf~naG~~~D~fl~~n~----~Wl~k~~~~~~~s 279 (988)
|++||+|++||+.||+.+....- .++.|+++|+|++|||||||||||+|++|.++. .|+||||++||.|
T Consensus 328 imepk~pedIyK~hl~~~r~~s~-------a~vdSarqnla~~fvNgFVn~Gyg~Dkl~~~~~~s~~~w~yknke~g~~s 400 (878)
T KOG2005|consen 328 IMEPKVPEDIYKSHLEDSRGGSG-------AGVDSARQNLAATFVNGFVNAGYGQDKLMLVQEGSRVNWLYKNKEHGMTS 400 (878)
T ss_pred ccCCCChHHHHHHHHhccccccc-------cCccHHHHHHHHHHHHHHhhcccCCCceeccCccccCcceeeccccCchH
Confidence 99999999999999998662111 124667799999999999999999999999865 6999999999999
Q ss_pred HhhhccceecCChHHHHHHHhcccCCCCCCCCCccchhHHHHHhhhccCCCCchhHHHHHHhhhhcCCCchhHHHHHHHH
Q psy6893 280 ATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEDDAVTGEAAGIA 359 (988)
Q Consensus 280 AtASLG~Ih~~~~~~gl~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~~~~~d~l~~lL~~~~~~d~~~~~~aA~lg 359 (988)
|+||+|+|.+||+|.||+++|+|||+ +++|+++|||+|+|++++|+++ +|||++++|++++.+++...+.+|++|
T Consensus 401 a~aS~G~I~~Wnvd~gL~qldkylys----~~~~ikaGaLLgigi~~~gv~n-e~dpalALLsdyv~~~~s~~ri~aIlG 475 (878)
T KOG2005|consen 401 AAASLGMIQLWNVDKGLEQLDKYLYS----DESYIKAGALLGIGISNSGVFN-ECDPALALLSDYLQSSSSIHRIGAILG 475 (878)
T ss_pred hhhhcchhheecchhhHHHHHHHhhc----CCchhhhccceeeeeecccccc-ccCHHHHHHHHhccCCCceeehHHhhh
Confidence 99999999999999999999999998 5899999999999999999998 999999999999999999999999999
Q ss_pred HHHhhccCCChhHHHHHHHhhhhcch--HH-HHHHHHHHHHHHhcCChhhHHHHHHHHhhcchhhhhccchhHHHHHhhh
Q psy6893 360 MGLVLLGSKSESAIQDMVAYAKETQH--EK-ILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCV 436 (988)
Q Consensus 360 lGL~~~Gs~~~~~~~~L~~~~~dt~~--E~-~~r~lalgl~~v~~g~~e~a~~li~~L~~~~d~~lr~~~~~~~~l~l~L 436 (988)
||++|+||.|+++...|.|++.|++. |+ .++++++|++|||+||+|.+..|+|+||++++..+.. .|.|||+|||
T Consensus 476 LglayaGsq~e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d--~~~RFL~LGL 553 (878)
T KOG2005|consen 476 LGLAYAGSQREEVLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELED--QWFRFLALGL 553 (878)
T ss_pred hHHhhcCCchHHHHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhc--hHHHHHHHHH
Confidence 99999999999999999999999884 56 9999999999999999999999999999999988877 8999999999
Q ss_pred hhhhcccc--chhhHHh---hccchhHH----HHHhhhccCCCHHHH--HHHHHHhccCCCch--hhHHHHHHHHHHhhc
Q psy6893 437 SYLYFDLF--SDLTYRI---VKNRSGMY----TIAMAYCGSGSNVAT--KRLLHVAVSDVNDD--VRREAVTALGFILFR 503 (988)
Q Consensus 437 gll~~g~~--~e~~l~~---~~~~~~~~----~~~~AYaGTGN~~~I--q~LLhi~~s~~~~d--vrr~AV~~lg~I~~~ 503 (988)
|++|+|+| +|++++. +++|++.+ +.+|||+|||||++| |.+||+|.+|..++ .+..||+|+|+|+||
T Consensus 554 ~llflgkqe~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMg 633 (878)
T KOG2005|consen 554 ALLFLGKQESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMG 633 (878)
T ss_pred HHHHhcccchHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhh
Confidence 99999999 9998887 88898877 999999999999999 99999999987654 356899999999999
Q ss_pred Cc-------------cccccccCCCCchhHHhhccchhhhhhHhhHHHhhhhcccCCCCchhhHHHHHHHHHhhhccCCc
Q psy6893 504 TL-------------FYVAPACTRSPWPGVISLLDDPMIELKEFSLKKLNDIVDDFWPENEKEKQLQARITKLSKILSGE 570 (988)
Q Consensus 504 ~~-------------~~~g~~~~~~~~p~ai~lL~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~Il~g~ 570 (988)
+. ++||++.+||++|+|+++|+. +|++.+..+.|.+..|+.++.
T Consensus 634 eeig~eM~lR~f~h~l~yge~~iRravPLal~llsv--SNPq~~vlDtLsk~shd~D~e--------------------- 690 (878)
T KOG2005|consen 634 EEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSV--SNPQVNVLDTLSKFSHDGDLE--------------------- 690 (878)
T ss_pred hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcc--CCCcchHHHHHHHhccCcchH---------------------
Confidence 96 389999999999999999994 345556778888777763221
Q ss_pred hhHHHHHHHHHhcCCchHHHHHhhhhhhhhhhhhhHHHHHHHHhhcCCCchhh---hcchhHHHHhhcccchhhhhhhhc
Q psy6893 571 VSIDLHLQFLIRSNKTDMLILKNTKESIRVSICHTATIIANAFMHSGTTSDQF---LRDNLEWLARATNWAKLTATASLG 647 (988)
Q Consensus 571 ~~~~l~l~fL~~~n~tD~~il~~~kds~r~s~~h~A~~~ana~~naGt~~D~f---lr~~~~wl~k~~~w~kfsA~ASLG 647 (988)
+. ++++|+.|++.|||+|.++ +|...+|+||.. ...|.+.-..|
T Consensus 691 -------------------------------va-~naIfamGLiGAGTnNARla~mLrqlaSYyyKd~-~~Lf~vriAQG 737 (878)
T KOG2005|consen 691 -------------------------------VA-MNAIFAMGLIGAGTNNARLAQMLRQLASYYYKDS-KALFVVRIAQG 737 (878)
T ss_pred -------------------------------HH-HHHHHHhccccCCcchHHHHHHHHHHHHHHhccc-hhHHHHHHHHH
Confidence 11 3679999999999999887 677788888876 46789999999
Q ss_pred ccccCChHHHHHHHhhcC
Q psy6893 648 VIHRGHETEALAHMQSYL 665 (988)
Q Consensus 648 ~Ih~gn~~~~l~~L~~yL 665 (988)
++|+| +|.-.|.||-
T Consensus 738 L~hlG---KGtltl~p~~ 752 (878)
T KOG2005|consen 738 LVHLG---KGTLTLSPFH 752 (878)
T ss_pred HHHhc---CCceeccccc
Confidence 99999 7888888885
No 5
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-70 Score=608.94 Aligned_cols=401 Identities=41% Similarity=0.607 Sum_probs=340.3
Q ss_pred CHHHHHHHHHHhccCCCch-hhHHHHHHHHHHhhcCcc----ccccccCC-CCchhHHhhccchhhhhhHhhHHHhhhhc
Q psy6893 470 SNVATKRLLHVAVSDVNDD-VRREAVTALGFILFRTLF----YVAPACTR-SPWPGVISLLDDPMIELKEFSLKKLNDIV 543 (988)
Q Consensus 470 N~~~Iq~LLhi~~s~~~~d-vrr~AV~~lg~I~~~~~~----~~g~~~~~-~~~p~ai~lL~~~~~~~~~~~~~~l~~~~ 543 (988)
+...|-.||.++.+.+.+. -|....=-+.-+.++.|- .++.+.+- .-...|.+|+..+...+.+.-.+++.
T Consensus 171 d~di~~ylL~Lait~v~~~~fr~~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~end~~l~aqvA--- 247 (926)
T COG5116 171 DCDIINYLLDLAITLVEEEGFRKEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVKENDLLLYAQVA--- 247 (926)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHhhhhhhhhhhhe---
Confidence 3446778999888877553 454444455667776641 22221110 12235566655333222222112222
Q ss_pred ccCCCCchhhHHHH-------HH---HHHhhhccCCchhHHHHHHHHHhcCCchHHHHHhhhhhh--hhhhhhhHHHHHH
Q psy6893 544 DDFWPENEKEKQLQ-------AR---ITKLSKILSGEVSIDLHLQFLIRSNKTDMLILKNTKESI--RVSICHTATIIAN 611 (988)
Q Consensus 544 ~~~~~~~~~~~~~~-------~~---~~~l~~Il~g~~~~~l~l~fL~~~n~tD~~il~~~kds~--r~s~~h~A~~~an 611 (988)
|++......+.- .+ -+.+++||+|+++.+++..||..+|+||+.+|+++|+|. |.|++|+|.+|||
T Consensus 248 --Fdledsasqe~leil~t~~vA~~~d~av~~ILSGe~t~ky~~~FLl~~nntd~~~Ln~sk~sl~~k~s~fH~avs~AN 325 (926)
T COG5116 248 --FDLEDSASQEILEILVTELVAQGYDQAVMSILSGEFTKKYLGAFLLEKNNTDFKFLNSSKSSLARKFSRFHYAVSLAN 325 (926)
T ss_pred --ehhccccCHHHHHhccchhhhccccHHHHHHhcCcchhHHHHHHHHhcCCcceeehhcchhhhhhhhhhhhhHHHHHH
Confidence 222222211111 11 246999999999999999999999999999999999995 7899999999999
Q ss_pred HHhhcCCCchhhhcchhHHHHhhcccchhhhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCC
Q psy6893 612 AFMHSGTTSDQFLRDNLEWLARATNWAKLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANH 691 (988)
Q Consensus 612 a~~naGt~~D~flr~~~~wl~k~~~w~kfsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~ 691 (988)
+|||+||++|.|+|+|++|++|++||+||+||||||+||+||..+|.++|.||||++. +++.|++||||||+|+|++|+
T Consensus 326 ~fMn~GTs~dsf~r~Nl~wlgka~nWaKFtatAslGvIH~gn~n~~~~il~pYLP~e~-ass~~~eGGalyalGLI~Agf 404 (926)
T COG5116 326 SFMNLGTSNDSFYRNNLDWLGKASNWAKFTATASLGVIHLGNSNPGYEILKPYLPSEV-ASSRQKEGGALYALGLIKAGF 404 (926)
T ss_pred HHhhcCCCcchHhhcCchhhhhcchHhhhhhhhhceeEeeccCCchhHhhhccCCccc-chhhhccCceeeeehhhccCc
Confidence 9999999999999999999999999999999999999999999999999999999763 577899999999999999999
Q ss_pred chHHHHHHHHHhhhcCch---hhHHHHHHhhHhhhcCCCCHHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHH
Q psy6893 692 GAVINDYLLGQVKDATNE---MVRHGGCLGLGLAAMGSARDDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQ 768 (988)
Q Consensus 692 ~~~~~~~Ll~~l~~s~~~---~ir~gA~LGLGla~~Gs~~~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~ 768 (988)
|.+..+||++++.++.++ ++.||+|||+||+.|||+|.++|+.|+.+++.|++..+|+|+++|||+|+||+..++++
T Consensus 405 gr~~TeYL~e~~~~teDe~~~~l~yG~~LGiGL~~MgSan~eiye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s~eai~ 484 (926)
T COG5116 405 GREDTEYLLEYFLDTEDELTPELAYGVCLGIGLINMGSANREIYEKLKELLKNDRALLGEAAVYGMGLLMLGTWSVEAIE 484 (926)
T ss_pred CcccHHHHHHHhCcccccccHHHHHHHHhhhcchhcccccHHHHHHHHHHHhcchhhhhhhhhhccceeeecCCCHHHHH
Confidence 999999999988888776 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHHhh
Q psy6893 769 DMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAILRR 848 (988)
Q Consensus 769 ~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~~~ 848 (988)
+|.+|.+||||++|.|++++|++||.||||+.++.+|..|..+.||++||.+++++++||||
T Consensus 485 dm~tya~ETqhe~i~Rglgig~aLi~ygrqe~add~I~ell~d~ds~lRy~G~fs~alAy~G------------------ 546 (926)
T COG5116 485 DMRTYAGETQHERIKRGLGIGFALILYGRQEMADDYINELLYDKDSILRYNGVFSLALAYVG------------------ 546 (926)
T ss_pred HHHHHhcchhhhhHHhhhhhhhhHhhhhhHHHHHHHHHHHhcCchHHhhhccHHHHHHHHhc------------------
Confidence 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccCCCchHHHHHhhhhhccCCChhhhhhHHhhhhhhhhhhhhhhHhhhh
Q psy6893 849 SGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRKKRTRRKKKK 906 (988)
Q Consensus 849 lG~alia~g~~~tgn~~air~ll~~~~sd~~~~vrraa~~alg~i~~~npeq~pk~~k 906 (988)
|||..+|+.|+|+++||+||||||||++++|||++++|...+..++
T Consensus 547 ------------Tgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~lv~tve 592 (926)
T COG5116 547 ------------TGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLLVGTVE 592 (926)
T ss_pred ------------CCcchhHhhhheeecccCchHHHHHHHHheeeeEecCcchhhHHHH
Confidence 9999999999999999999999999999999999999997765433
No 6
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-63 Score=550.36 Aligned_cols=489 Identities=17% Similarity=0.192 Sum_probs=411.4
Q ss_pred hcccccChHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHcCChHHHHHHHHHhhcCCCCchhHHHHHHHhhcccccHHHH
Q psy6893 44 AMSSIQSRSFRAQILRTLVRLYHSLSVPDYVNMAQCWIYLDDPRSVANLLGKLVAGSADDDLMAAQIGFDLYESATQAFL 123 (988)
Q Consensus 44 ~~~~v~~~~fR~~vL~lL~~ly~~~~~pDy~~~~qc~~~Lnd~~~va~il~~L~~~~~~~~l~ayQiaFdL~~~~~Q~fl 123 (988)
|..+.+-|+ -...|+...++|.++.. .....-.++.|++...+.+.++.. +|+.+-.|++|.|++ +|.+.
T Consensus 231 cv~llp~pe-dVa~l~ta~~IYlk~~~--lt~av~~aiRl~~~~~i~e~~~a~-----~Dp~~kKQ~~YiLAr--q~~~~ 300 (881)
T COG5110 231 CVPLLPPPE-DVALLETALKIYLKMGD--LTRAVVGAIRLQKSKEIIEYVRAI-----EDPDYKKQCLYILAR--QNLYY 300 (881)
T ss_pred hhccCCChH-HHHHHHHHHHHHHhhhH--HHHHHHHHHhcccHHHHHHHHHhc-----cChHHHHHHHHHHHh--ccCCc
Confidence 456788888 56789999999999774 777788899999999999999887 889999999999977 22111
Q ss_pred HHHHHhhcccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhhh
Q psy6893 124 ASVLQELKTCAPIPDATHVVVKVPVEGAPTPATPDTEAPTPAPGTESGPSSTTPGPETKTLESLNEKEKQLQARITKLSK 203 (988)
Q Consensus 124 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (988)
+ .. |.+ ..+ .-. |.+-++||..+.+++.
T Consensus 301 e---------~~----------------------dee---------~~d--------il~----Ng~lsdhf~ylgkELn 328 (881)
T COG5110 301 E---------AS----------------------DEE---------EKD--------ILS----NGYLSDHFRYLGKELN 328 (881)
T ss_pred c---------cC----------------------CHH---------HHH--------Hhc----CCcHHHHHHHHHHHhc
Confidence 1 00 000 000 001 1234789999999999
Q ss_pred cccCccchhhHHHHhhhcccchHHhHHhhhhhhhhhhhhhHHHHHHHhhhccCCcccccccchhHHHhhccchhhHHhhh
Q psy6893 204 ILSGEVSIDLHLQFLIRSNKTDMLILKNTKESIRVSICHTATIIANAFMHSGTTSDQFLRDNLEWLARATNWAKLTATAS 283 (988)
Q Consensus 204 IL~g~~~~~l~~~fL~~~n~~d~~iL~~~k~s~r~s~~~~A~~~~Naf~naG~~~D~fl~~n~~Wl~k~~~~~~~sAtAS 283 (988)
+..|+.|++||+.||.... +-++ + ..+.++-+|+|.+|||+|+|+|+++|+++-.+.+|+||++..|+.||+||
T Consensus 329 l~~PkvpedI~K~hl~~~k-~~~~-~----agi~sA~qnla~~fvn~~inlgy~nD~li~~dd~wiyk~k~~gliSa~aS 402 (881)
T COG5110 329 LDKPKVPEDILKGHLKYDK-DTRQ-L----AGIGSANQNLAMGFVNDPINLGYENDSLIPLDDEWIYKCKVPGLISAFAS 402 (881)
T ss_pred CCCCCChHHHHHhhhhccc-cchh-h----cccchhhhHHHHhhhccccccCccCCeeeecchhhhhcCCCCChhheeec
Confidence 9999999999999986532 2111 1 12367779999999999999999999999999999999999999999999
Q ss_pred ccceecCChHHHHHHHhcccCCCCCCCCCccchhHHHHHhhhccCCCCchhHHHHHHhhhhcCCCchhHHHHHHHHHHHh
Q psy6893 284 LGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEDDAVTGEAAGIAMGLV 363 (988)
Q Consensus 284 LG~Ih~~~~~~gl~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~~~~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~ 363 (988)
+|+|..||.+.||++||+|||+ +.+|.|+|||+|+|+.+.++++ +.+|++++|++++.+.+...+.||++|||++
T Consensus 403 IG~i~~WN~d~gl~~Ldkyly~----de~~~KaGaLLGig~s~~~v~~-E~~palalLs~yl~s~s~k~~~aaiLGlg~a 477 (881)
T COG5110 403 IGVIESWNSDKGLETLDKYLYA----DESYRKAGALLGIGLSGLRVFE-ERPPALALLSNYLQSSSSKHVIAAILGLGAA 477 (881)
T ss_pred chhhhhhhhHhhHHHHHHHHhc----Ccccccccceeeeeeccccccc-ccchHHHHHHHhccCCchHHHHHHHhhhHHh
Confidence 9999999999999999999998 5899999999999999999998 9999999999999999999999999999999
Q ss_pred hccCCChhHHHHHHHhhhhcch--HH-HHHHHHHHHHHHhcCChhhHHHHHHHHhhcchhhhhccchhHHHHHhhhhhhh
Q psy6893 364 LLGSKSESAIQDMVAYAKETQH--EK-ILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCVSYLY 440 (988)
Q Consensus 364 ~~Gs~~~~~~~~L~~~~~dt~~--E~-~~r~lalgl~~v~~g~~e~a~~li~~L~~~~d~~lr~~~~~~~~l~l~Lgll~ 440 (988)
|.|+.++++++.|.|++.+|+. |. +++++++|.+|||+||+|.++.++|+++++....... .|.||||||||+||
T Consensus 478 fsGt~~eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ts~ilqtf~Er~~~e~~t--qw~RFlaLgLa~Lf 555 (881)
T COG5110 478 FSGTQAEEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTSLILQTFVERGKIESET--QWFRFLALGLASLF 555 (881)
T ss_pred hcCCcHHHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHHHH
Confidence 9999999999999999999984 77 9999999999999999999999999999997755555 79999999999999
Q ss_pred cccc--chhhHHh---hccchh----HHHHHhhhccCCCHHHHHHHHHHhccCCCch-------hhHHHHHHHHHHhhcC
Q psy6893 441 FDLF--SDLTYRI---VKNRSG----MYTIAMAYCGSGSNVATKRLLHVAVSDVNDD-------VRREAVTALGFILFRT 504 (988)
Q Consensus 441 ~g~~--~e~~l~~---~~~~~~----~~~~~~AYaGTGN~~~Iq~LLhi~~s~~~~d-------vrr~AV~~lg~I~~~~ 504 (988)
+||+ +++++++ |++|.. +++.+|+|+||||++.||.|||+|.+...|+ ++..|++|+++|+||+
T Consensus 556 ~g~~d~~d~v~eti~aIeg~ls~~~eiLv~~c~Y~GTGdvl~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGe 635 (881)
T COG5110 556 YGRKDQVDDVEETIMAIEGALSKHEEILVKGCQYVGTGDVLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGE 635 (881)
T ss_pred ccccchhHHHHHHHHHhcchhhhhHHHHHhhceecccCcHHHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcc
Confidence 9999 7777776 666654 4599999999999999999999999887776 3567999999999998
Q ss_pred c-------------cccccccCCCCchhHHhhccchhhhhhHhhHHHhhhhcccCCCCchhhHHHHHHHHHhhhccCCch
Q psy6893 505 L-------------FYVAPACTRSPWPGVISLLDDPMIELKEFSLKKLNDIVDDFWPENEKEKQLQARITKLSKILSGEV 571 (988)
Q Consensus 505 ~-------------~~~g~~~~~~~~p~ai~lL~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~Il~g~~ 571 (988)
. ++||.+.+|+.+|+|.++|+. .++..+..|.|.+..|+
T Consensus 636 dig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~--SnPQm~vfDtL~r~shd-------------------------- 687 (881)
T COG5110 636 DIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSP--SNPQMNVFDTLERSSHD-------------------------- 687 (881)
T ss_pred hhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccC--CCcchHHHHHHHHhccc--------------------------
Confidence 6 389999999999999999985 12223355555555554
Q ss_pred hHHHHHHHHHhcCCchHHHHHhhhhhhhhhhhhhHHHHHHHHhhcCCCchhh---hcchhHHHHhhcccchhhhhhhhcc
Q psy6893 572 SIDLHLQFLIRSNKTDMLILKNTKESIRVSICHTATIIANAFMHSGTTSDQF---LRDNLEWLARATNWAKLTATASLGV 648 (988)
Q Consensus 572 ~~~l~l~fL~~~n~tD~~il~~~kds~r~s~~h~A~~~ana~~naGt~~D~f---lr~~~~wl~k~~~w~kfsA~ASLG~ 648 (988)
.|+. .+ ..++|+.|++.|||.|.++ +|...+|++|.. .+.|..-...|+
T Consensus 688 --------------~dl~----------v~---~ntIfamGLiGAGT~NaRlaqlLrQlaSYY~kes-~aLfv~riAQGL 739 (881)
T COG5110 688 --------------GDLN----------VI---INTIFAMGLIGAGTLNARLAQLLRQLASYYYKES-KALFVLRIAQGL 739 (881)
T ss_pred --------------cchh----------HH---HHHHHHhhccccCcchHHHHHHHHHHHHHHhhcc-chhhHHHHHHHH
Confidence 2221 11 3678999999999999876 677888988887 467888899999
Q ss_pred cccCChHHHHHHHhhcCC
Q psy6893 649 IHRGHETEALAHMQSYLP 666 (988)
Q Consensus 649 Ih~gn~~~~l~~L~~yL~ 666 (988)
+|+| +|...|+||-.
T Consensus 740 l~LG---KGtmti~p~~~ 754 (881)
T COG5110 740 LSLG---KGTMTISPLYF 754 (881)
T ss_pred HHhc---CCceeeccccc
Confidence 9999 78888888864
No 7
>KOG2005|consensus
Probab=100.00 E-value=6.1e-63 Score=560.93 Aligned_cols=344 Identities=23% Similarity=0.347 Sum_probs=314.7
Q ss_pred HhhhhcccCCCCchhhHHHHHHHHHhhhccCCchhHHHHHHHHHhcCCchHHHHHhhhhhhhhhhhhhHHHHHHHHhhcC
Q psy6893 538 KLNDIVDDFWPENEKEKQLQARITKLSKILSGEVSIDLHLQFLIRSNKTDMLILKNTKESIRVSICHTATIIANAFMHSG 617 (988)
Q Consensus 538 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~Il~g~~~~~l~l~fL~~~n~tD~~il~~~kds~r~s~~h~A~~~ana~~naG 617 (988)
.|.+|+.|.. .++++..+++-+.|+.+.++.++|..||+.++... ..-.||+|.++ |++|||||+|||
T Consensus 305 ~l~di~sN~~-----Lse~f~~LarELeimepk~pedIyK~hl~~~r~~s----~a~vdSarqnl---a~~fvNgFVn~G 372 (878)
T KOG2005|consen 305 ELQDILSNGK-----LSEHFLYLARELEIMEPKVPEDIYKSHLEDSRGGS----GAGVDSARQNL---AATFVNGFVNAG 372 (878)
T ss_pred HHHHHHcccc-----HHHHHHHHHHHhcccCCCChHHHHHHHHhcccccc----ccCccHHHHHH---HHHHHHHHhhcc
Confidence 3666777643 45799999999999999999999999999888322 13457889985 999999999999
Q ss_pred CCchhhhcchh----HHHHhhcccchhhhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch
Q psy6893 618 TTSDQFLRDNL----EWLARATNWAKLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA 693 (988)
Q Consensus 618 t~~D~flr~~~----~wl~k~~~w~kfsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~ 693 (988)
||+|++|.++. .|+||++++++.+|+||+|+|.+||+|.|+++|++|++ ++++|+++|||+|+|++++|+.+
T Consensus 373 yg~Dkl~~~~~~s~~~w~yknke~g~~sa~aS~G~I~~Wnvd~gL~qldkyly----s~~~~ikaGaLLgigi~~~gv~n 448 (878)
T KOG2005|consen 373 YGQDKLMLVQEGSRVNWLYKNKEHGMTSAAASLGMIQLWNVDKGLEQLDKYLY----SDESYIKAGALLGIGISNSGVFN 448 (878)
T ss_pred cCCCceeccCccccCcceeeccccCchHhhhhcchhheecchhhHHHHHHHhh----cCCchhhhccceeeeeecccccc
Confidence 99999998753 69999999999999999999999999999999999997 78999999999999999999988
Q ss_pred H--HHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHHHHHHHHHhhccCChhhHH---HHHHHhhcccCCCCCHHHHH
Q psy6893 694 V--INDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDDIYEQLKFNLYQDDAVTGE---AAGIAMGLVLLGSKSESAIQ 768 (988)
Q Consensus 694 ~--~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~dv~~~L~~~l~~D~~~~~e---~AalAlGLI~vGs~n~d~i~ 768 (988)
+ ++.+|++.+.++++..+|+||+||||+||+||+|++|...|.|++.. +..+++ +|++++|+|||||||+|+.+
T Consensus 449 e~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~lL~Pi~~d-~~~~~ev~~~aslsLG~IfvGscn~dvts 527 (878)
T KOG2005|consen 449 ECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLELLSPIMFD-TKSPMEVVAFASLSLGMIFVGSCNEDVTS 527 (878)
T ss_pred ccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHHHHhHHhcC-CCCchhHHHHHHhhcceeEEecCChHHHH
Confidence 6 78888898889989999999999999999999999999999999954 433344 79999999999999999999
Q ss_pred HHHHHHHhcc----cchhhhHHHHHHHHHhcCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHH--HHHHH
Q psy6893 769 DMVAYAKETQ----HEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVAT--KRLLH 842 (988)
Q Consensus 769 ~ll~~~~etq----~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~i--q~lL~ 842 (988)
.|+|.++|.. .+.|.||+++|||++|+|++|.+|++.+.++++++|+.++..+++.+|||+|||||++| |.++|
T Consensus 528 ~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~ 607 (878)
T KOG2005|consen 528 SILQTLMEKSETELEDQWFRFLALGLALLFLGKQESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLS 607 (878)
T ss_pred HHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEechhhhhh
Confidence 9999987754 58899999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHH-----------hhhhhhhhhhhccCCCchHHHHHhhhhhccCCChhhhhhHHhhhhhhhhhhhhh
Q psy6893 843 DAIL-----------RRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRKKRT 900 (988)
Q Consensus 843 ~~~~-----------~~lG~alia~g~~~tgn~~air~ll~~~~sd~~~~vrraa~~alg~i~~~npeq 900 (988)
.|.+ +++|+|+|+||++ +|.+|++|.|.|++..+ ++++||++|+|+|+++.+||+.
T Consensus 608 ~cgE~~~~~e~~~~~avLgiAliAMgee-ig~eM~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~ 674 (878)
T KOG2005|consen 608 FCGEHDADLESEQELAVLGIALIAMGEE-IGSEMVLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV 674 (878)
T ss_pred hcCCCccchhhhccchhhhhhhhhhhhh-hhhHHHHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc
Confidence 9986 7999999999999 99999999999999885 7899999999999999999983
No 8
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-51 Score=455.88 Aligned_cols=345 Identities=20% Similarity=0.246 Sum_probs=305.7
Q ss_pred hhhhcccCCCCchhhHHHHHHHHHhhhccCCchhHHHHHHHHHhcCCchHHHHHhhhhhhhhhhhhhHHHHHHHHhhcCC
Q psy6893 539 LNDIVDDFWPENEKEKQLQARITKLSKILSGEVSIDLHLQFLIRSNKTDMLILKNTKESIRVSICHTATIIANAFMHSGT 618 (988)
Q Consensus 539 l~~~~~~~~~~~~~~~~~~~~~~~l~~Il~g~~~~~l~l~fL~~~n~tD~~il~~~kds~r~s~~h~A~~~ana~~naGt 618 (988)
+.+|..|.+ .++++.-+.+-+.+..+..+.+++..+|.-...+ .+ + .-.+++..++ |.+|+|+++|+|+
T Consensus 307 ~~dil~Ng~-----lsdhf~ylgkELnl~~PkvpedI~K~hl~~~k~~-~~-~-agi~sA~qnl---a~~fvn~~inlgy 375 (881)
T COG5110 307 EKDILSNGY-----LSDHFRYLGKELNLDKPKVPEDILKGHLKYDKDT-RQ-L-AGIGSANQNL---AMGFVNDPINLGY 375 (881)
T ss_pred HHHHhcCCc-----HHHHHHHHHHHhcCCCCCChHHHHHhhhhccccc-hh-h-cccchhhhHH---HHhhhccccccCc
Confidence 445555543 4578889999999999999999988765433222 11 1 1224456664 8899999999999
Q ss_pred CchhhhcchhHHHHhhcccchhhhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchH--HH
Q psy6893 619 TSDQFLRDNLEWLARATNWAKLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAV--IN 696 (988)
Q Consensus 619 ~~D~flr~~~~wl~k~~~w~kfsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~--~~ 696 (988)
.||+++-.+-+|+||++..++.+|+||+|+|..||.+.|+++|++||+ ++++|.++|||+++|+...+++++ ++
T Consensus 376 ~nD~li~~dd~wiyk~k~~gliSa~aSIG~i~~WN~d~gl~~Ldkyly----~de~~~KaGaLLGig~s~~~v~~E~~pa 451 (881)
T COG5110 376 ENDSLIPLDDEWIYKCKVPGLISAFASIGVIESWNSDKGLETLDKYLY----ADESYRKAGALLGIGLSGLRVFEERPPA 451 (881)
T ss_pred cCCeeeecchhhhhcCCCCChhheeecchhhhhhhhHhhHHHHHHHHh----cCcccccccceeeeeecccccccccchH
Confidence 999999988999999999999999999999999999999999999997 788999999999999998888775 67
Q ss_pred HHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHHHHHHHHHhhccCCh--hhHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q psy6893 697 DYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDDIYEQLKFNLYQDDA--VTGEAAGIAMGLVLLGSKSESAIQDMVAYA 774 (988)
Q Consensus 697 ~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~dv~~~L~~~l~~D~~--~~~e~AalAlGLI~vGs~n~d~i~~ll~~~ 774 (988)
.+|++...++++..++..|+||||+||.|+.++++.+.|.|++.+++. ....+|++++|.||+||||+|+.+.|+|.+
T Consensus 452 lalLs~yl~s~s~k~~~aaiLGlg~afsGt~~eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ts~ilqtf 531 (881)
T COG5110 452 LALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTSLILQTF 531 (881)
T ss_pred HHHHHHhccCCchHHHHHHHhhhHHhhcCCcHHHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHHHHHHHHH
Confidence 788888888888999999999999999999999999999999976544 223479999999999999999999999988
Q ss_pred Hhcc----cchhhhHHHHHHHHHhcCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHH----
Q psy6893 775 KETQ----HEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAIL---- 846 (988)
Q Consensus 775 ~etq----~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~---- 846 (988)
.|.. ...|.||+++|||++||||+|.+|.+.+++..++.|+.|...+++-+|+|+|||||+.||++||.|-+
T Consensus 532 ~Er~~~e~~tqw~RFlaLgLa~Lf~g~~d~~d~v~eti~aIeg~ls~~~eiLv~~c~Y~GTGdvl~Iq~lLhv~~e~~~D 611 (881)
T COG5110 532 VERGKIESETQWFRFLALGLASLFYGRKDQVDDVEETIMAIEGALSKHEEILVKGCQYVGTGDVLVIQSLLHVKDEFTGD 611 (881)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHccccchhHHHHHHHHHhcchhhhhHHHHHhhceecccCcHHHHHHHHhccCCCCcc
Confidence 7643 57899999999999999999999999999999999999999999999999999999999999997664
Q ss_pred ------------hhhhhhhhhhhccCCCchHHHHHhhhhhccCCChhhhhhHHhhhhhhhhhhhhh
Q psy6893 847 ------------RRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRKKRT 900 (988)
Q Consensus 847 ------------~~lG~alia~g~~~tgn~~air~ll~~~~sd~~~~vrraa~~alg~i~~~npeq 900 (988)
+++|+|+|+||++ +|.+|+.|.+.|.+..+ ++++|+++|+|+|.+.++||+.
T Consensus 612 ~~k~~ea~ie~~a~Lg~AliamGed-ig~eMvlRhf~h~mhyg-~~hiR~~~PLa~gils~SnPQm 675 (881)
T COG5110 612 TLKNEEALIESLALLGCALIAMGED-IGSEMVLRHFSHSMHYG-SSHIRSVLPLAYGILSPSNPQM 675 (881)
T ss_pred cchhhHHHHHHHHHhhhHHhhhcch-hhHHHHHHHhhhHhhcC-cHHHHHHHHHHHhcccCCCcch
Confidence 7899999999999 99999999999999886 8999999999999999999983
No 9
>PRK09687 putative lyase; Provisional
Probab=98.73 E-value=1.4e-06 Score=96.69 Aligned_cols=131 Identities=18% Similarity=0.240 Sum_probs=91.5
Q ss_pred hhhhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcCchhhHHHHHHh
Q psy6893 639 KLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEMVRHGGCLG 718 (988)
Q Consensus 639 kfsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~~~~ir~gA~LG 718 (988)
++.|+.+||.|- +. .++..|.+.|. ..++++|..|.+|||-+..+. ..+...|...+ +..+..||..|+.|
T Consensus 145 R~~a~~aLg~~~--~~-~ai~~L~~~L~----d~~~~VR~~A~~aLg~~~~~~-~~~~~~L~~~L-~D~~~~VR~~A~~a 215 (280)
T PRK09687 145 RFAVAFALSVIN--DE-AAIPLLINLLK----DPNGDVRNWAAFALNSNKYDN-PDIREAFVAML-QDKNEEIRIEAIIG 215 (280)
T ss_pred HHHHHHHHhccC--CH-HHHHHHHHHhc----CCCHHHHHHHHHHHhcCCCCC-HHHHHHHHHHh-cCCChHHHHHHHHH
Confidence 367788887664 44 58888888885 456789999999999883222 23666676666 44577899999999
Q ss_pred hHhhhcCCCCHHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHH
Q psy6893 719 LGLAAMGSARDDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAV 788 (988)
Q Consensus 719 LGla~~Gs~~~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lal 788 (988)
||- .+++.++..|+..+. |+. .+..|+.|+|-+ | +.+++..|.+++....+..+.+....
T Consensus 216 Lg~----~~~~~av~~Li~~L~-~~~-~~~~a~~ALg~i--g--~~~a~p~L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 216 LAL----RKDKRVLSVLIKELK-KGT-VGDLIIEAAGEL--G--DKTLLPVLDTLLYKFDDNEIITKAID 275 (280)
T ss_pred HHc----cCChhHHHHHHHHHc-CCc-hHHHHHHHHHhc--C--CHhHHHHHHHHHhhCCChhHHHHHHH
Confidence 987 345788999998884 333 344677777775 6 46788888888765555555544433
No 10
>PRK09687 putative lyase; Provisional
Probab=98.63 E-value=1.9e-06 Score=95.62 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=29.3
Q ss_pred hhhhhhccCCCchHHHHHhhhhhccCCChhhhhhHHhhh
Q psy6893 852 YTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTAL 890 (988)
Q Consensus 852 alia~g~~~tgn~~air~ll~~~~sd~~~~vrraa~~al 890 (988)
+..++|+. |.+.++..|..++..++|..|++.+.+++
T Consensus 241 a~~ALg~i--g~~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 241 IIEAAGEL--GDKTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHhc--CCHhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 44567774 77889999999987677889999887776
No 11
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.33 E-value=0.00031 Score=94.05 Aligned_cols=184 Identities=20% Similarity=0.171 Sum_probs=102.2
Q ss_pred hhHHHHHHhhhhcCCCchhHHHHHHHHHHHhhccCC----------ChhHHHHHHHhhhhcc-hHHHHHHHHHHH-HHHh
Q psy6893 333 INDYLLGQVKDATNEDDAVTGEAAGIAMGLVLLGSK----------SESAIQDMVAYAKETQ-HEKILRGLAVGI-SFIM 400 (988)
Q Consensus 333 ~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~~~Gs~----------~~~~~~~L~~~~~dt~-~E~~~r~lalgl-~~v~ 400 (988)
...|++.+|++ .+...++.|+-+|..+-.++. .+.++..|++.+.+.. .+..++..+++. .-+.
T Consensus 100 aIppLV~LL~s----Gs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs 175 (2102)
T PLN03200 100 CIPPLLSLLKS----GSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLC 175 (2102)
T ss_pred ChHHHHHHHHC----CCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHh
Confidence 56778888754 357899999988887776642 2446678888888754 466555554433 2333
Q ss_pred cCChh---------hHHHHHHHHhhcchhhhhccchhHHHHHhhhhhhhccccchhhHHhhccchhHHHHHhhhccCCCH
Q psy6893 401 YGQLE---------NADDLVRDLCEEKDAILRRSGMYTIAMAYCVSYLYFDLFSDLTYRIVKNRSGMYTIAMAYCGSGSN 471 (988)
Q Consensus 401 ~g~~e---------~a~~li~~L~~~~d~~lr~~~~~~~~l~l~Lgll~~g~~~e~~l~~~~~~~~~~~~~~AYaGTGN~ 471 (988)
..++. .+..+++.| ...++.++..+.+ .|..+- ...+.+. ..+. ..
T Consensus 176 ~~~en~~~~IIeaGaVp~LV~LL-sS~d~~lQ~eAa~------aLa~La-----------ss~ee~~--~aVI--ea--- 230 (2102)
T PLN03200 176 GSTDGFWSATLEAGGVDILVKLL-SSGNSDAQANAAS------LLARLM-----------MAFESSI--SKVL--DA--- 230 (2102)
T ss_pred cCccchHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHH------HHHHHH-----------cCChHHH--HHHH--HC---
Confidence 32222 223344444 3344444432111 010000 0111111 1111 11
Q ss_pred HHHHHHHHHhccCCCchhhHHHHHHHHHHhhcCccccccccCCCCchhHHhhccchhh---------hhhHhhHHHhhhh
Q psy6893 472 VATKRLLHVAVSDVNDDVRREAVTALGFILFRTLFYVAPACTRSPWPGVISLLDDPMI---------ELKEFSLKKLNDI 542 (988)
Q Consensus 472 ~~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~~~~~~~~g~~~~~~~~p~ai~lL~~~~~---------~~~~~~~~~l~~~ 542 (988)
-+|..|++++.++.+.++|..|+-.|+-|+.+++-+-..-...-|+|.-|.++..|.. +..++-+.-|.++
T Consensus 231 GaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNI 310 (2102)
T PLN03200 231 GAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANI 310 (2102)
T ss_pred CCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHH
Confidence 2388899988887777899999999999998765321111123578888888874431 1233333446676
Q ss_pred ccc
Q psy6893 543 VDD 545 (988)
Q Consensus 543 ~~~ 545 (988)
..+
T Consensus 311 cgg 313 (2102)
T PLN03200 311 CGG 313 (2102)
T ss_pred hCC
Confidence 665
No 12
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.19 E-value=0.00012 Score=93.51 Aligned_cols=194 Identities=19% Similarity=0.180 Sum_probs=125.7
Q ss_pred hhhhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcCchhhHHHHHHh
Q psy6893 639 KLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEMVRHGGCLG 718 (988)
Q Consensus 639 kfsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~~~~ir~gA~LG 718 (988)
+..|+..||.+..+++. .|-.+|. ..++.+|..|+.+||-+.. ...|+..+ +.++..||..++-+
T Consensus 701 R~~A~~aL~~~~~~~~~----~l~~~L~----D~d~~VR~~Av~aL~~~~~------~~~l~~~l-~D~~~~VR~~aa~a 765 (897)
T PRK13800 701 RAAALDVLRALRAGDAA----LFAAALG----DPDHRVRIEAVRALVSVDD------VESVAGAA-TDENREVRIAVAKG 765 (897)
T ss_pred HHHHHHHHHhhccCCHH----HHHHHhc----CCCHHHHHHHHHHHhcccC------cHHHHHHh-cCCCHHHHHHHHHH
Confidence 35667777777776653 3444664 5678999999999998733 12233333 45578999999998
Q ss_pred hHhhhcCCCCHHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhH-HHHHHHHHhcCC
Q psy6893 719 LGLAAMGSARDDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRG-LAVGISFIMYGQ 797 (988)
Q Consensus 719 LGla~~Gs~~~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~-lalgLgLi~~Gr 797 (988)
||- +|+........|..++..++......|..+||-+ |.. ..++..+++.+.+. +...|. .+-+||. ++.
T Consensus 766 L~~--~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~--g~~-~~~~~~l~~aL~d~--d~~VR~~Aa~aL~~--l~~ 836 (897)
T PRK13800 766 LAT--LGAGGAPAGDAVRALTGDPDPLVRAAALAALAEL--GCP-PDDVAAATAALRAS--AWQVRQGAARALAG--AAA 836 (897)
T ss_pred HHH--hccccchhHHHHHHHhcCCCHHHHHHHHHHHHhc--CCc-chhHHHHHHHhcCC--ChHHHHHHHHHHHh--ccc
Confidence 876 4666666677888777433333344666677765 432 33445566655332 233454 5555654 467
Q ss_pred chhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHHhhhhhhhhhhhccCCCchHHHHHhhhhhccC
Q psy6893 798 LENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAILRRSGMYTIAMAYCGSGSNVATKRLLHVAVSD 877 (988)
Q Consensus 798 ~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~~~lG~alia~g~~~tgn~~air~ll~~~~sd 877 (988)
++....++..| .++++..|...+.+++ .. .|++.+...|. -+.+|
T Consensus 837 ~~a~~~L~~~L-~D~~~~VR~~A~~aL~--------------------------------~~-~~~~~a~~~L~-~al~D 881 (897)
T PRK13800 837 DVAVPALVEAL-TDPHLDVRKAAVLALT--------------------------------RW-PGDPAARDALT-TALTD 881 (897)
T ss_pred cchHHHHHHHh-cCCCHHHHHHHHHHHh--------------------------------cc-CCCHHHHHHHH-HHHhC
Confidence 77777777776 5778888888655443 11 25666766665 44568
Q ss_pred CChhhhhhHHhhhh
Q psy6893 878 VNDDVRREAVTALG 891 (988)
Q Consensus 878 ~~~~vrraa~~alg 891 (988)
.+.+||++|..+|+
T Consensus 882 ~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 882 SDADVRAYARRALA 895 (897)
T ss_pred CCHHHHHHHHHHHh
Confidence 89999999998874
No 13
>KOG1858|consensus
Probab=98.15 E-value=1.9e-05 Score=100.50 Aligned_cols=231 Identities=14% Similarity=0.203 Sum_probs=136.3
Q ss_pred HHHhhhcccCccchhhHHHHhhhcccchHHhHHhhhhhhhhhhh--hhHHHHHHHhhhccCCcccccc----c-------
Q psy6893 198 ITKLSKILSGEVSIDLHLQFLIRSNKTDMLILKNTKESIRVSIC--HTATIIANAFMHSGTTSDQFLR----D------- 264 (988)
Q Consensus 198 ~~~~~~IL~g~~~~~l~~~fL~~~n~~d~~iL~~~k~s~r~s~~--~~A~~~~Naf~naG~~~D~fl~----~------- 264 (988)
++.+...|.+..|+-+-.+-+ -..|.++.+..+.-+. .+| -.|.-+.-|++-.||..+.--. +
T Consensus 722 ~~~V~~lL~~~~pi~i~~~~~---~~~D~~~~e~q~~~l~-~lc~RTma~pvGrg~l~~~T~~p~~t~~~~~p~l~~~g~ 797 (1496)
T KOG1858|consen 722 MAEVRSLLNSSSPIVIETEQL---KTEDLEFKEEQEKFLQ-QLCLRTMALPVGRGMLTYGTKVPLPTESLTIPKLNLLGR 797 (1496)
T ss_pred HHHHHHHhccCCCeEEEEeee---ccchhhhHHHHHHHHH-HHHHHHhccchhhhhhcccccCCCcccccccchhhcccc
Confidence 344445555555554433333 1246665433321111 111 1355566777777887665432 0
Q ss_pred ---------chhH-HHhhccchhhHHhhhccc-eecCChHHHHHHHh-cccCCCCCCCCCccchhHHHHHhhhccCCCCc
Q psy6893 265 ---------NLEW-LARATNWAKLTATASLGV-IHRGHETEALAHMQ-SYLPRETGPTSGYYEGGGLYALGLIHANHGAV 332 (988)
Q Consensus 265 ---------n~~W-l~k~~~~~~~sAtASLG~-Ih~~~~~~gl~~l~-~yL~s~~~~~~~y~~~GaL~alGli~~g~~~~ 332 (988)
+.+- ...-++|+-|-..-+.|+ |-....+ |+ .++--++.......-||=|+||||= ||-..
T Consensus 798 ~p~~~~ti~~~e~~~~~~teWp~FhngVa~GLrIsp~~~~-----Ids~WI~fnkp~~~~a~haGfl~glGLn--GhL~~ 870 (1496)
T KOG1858|consen 798 HPGTLITIENKEIENQELTEWPEFHNGVASGLRISPFATE-----IDSSWIVFNKPKELTAEHAGFLFGLGLN--GHLKA 870 (1496)
T ss_pred CCcccceecCchhhccccccchhhHHHHHhhcccCccccc-----ccceeEEEecCCCcchheeheeeecccc--ccccc
Confidence 1121 135578999987766665 2221111 21 1110011124556789999999983 33210
Q ss_pred hhHHHHHHhhhhcCCCchhHHHHHHHHHHHhhccCCChhHHHHHHHhhhh----cchHH-----HHH--HHHHHHHHHhc
Q psy6893 333 INDYLLGQVKDATNEDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKE----TQHEK-----ILR--GLAVGISFIMY 401 (988)
Q Consensus 333 ~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~~~Gs~~~~~~~~L~~~~~d----t~~E~-----~~r--~lalgl~~v~~ 401 (988)
.. .-.+-.++...+..+..|=-+||+..|.||++.++...|.-++.- |..|. +.. -+.+||-|-|+
T Consensus 871 L~---~~~i~qyls~~h~~tSvgLLlGlsaS~~GtmD~ki~Kllsvhl~allp~ts~El~i~~~iQtAaIvGlGlLy~gS 947 (1496)
T KOG1858|consen 871 LN---TWHIYQYLSPKHEMTSVGLLLGLSASYRGTMDAKITKLLSVHLSALLPATSTELNIPLLIQTAAIVGLGLLYAGS 947 (1496)
T ss_pred cc---HHHHHHHccCCCcceeHHHHhhhhHhhcCccchhHHHHHHHHHhhcCCCCcccccCchhhhhhhhhhhhheecCc
Confidence 00 112334455667788888999999999999999998777655542 22221 333 34566666688
Q ss_pred CChhhHHHHHHHHhhcchh---hhhccchhHHHHHhhhhhhhcccc
Q psy6893 402 GQLENADDLVRDLCEEKDA---ILRRSGMYTIAMAYCVSYLYFDLF 444 (988)
Q Consensus 402 g~~e~a~~li~~L~~~~d~---~lr~~~~~~~~l~l~Lgll~~g~~ 444 (988)
|+.-.++.+++.+-....+ .-|. .|...-.++|||+++|++
T Consensus 948 ~h~~iaevL~~Eigr~~~~e~~~~rE--~Y~laAG~SLGLi~LG~G 991 (1496)
T KOG1858|consen 948 AHRRIAEVLLAEIGRPPNPENVLERE--GYKLAAGFSLGLINLGRG 991 (1496)
T ss_pred chHHHHHHHHHHhcCCCCcccchhhh--hhhhhcCcccceeeeccC
Confidence 9999999999999877655 2455 588888899999999996
No 14
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.06 E-value=0.00043 Score=88.65 Aligned_cols=120 Identities=15% Similarity=0.044 Sum_probs=62.3
Q ss_pred hhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcCchhhHHHHHHhhH
Q psy6893 641 TATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEMVRHGGCLGLG 720 (988)
Q Consensus 641 sA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~~~~ir~gA~LGLG 720 (988)
.++.+||-+..++. .+...|..++. ..++.+|.-|+.+||-+. ....+...|...+ .+++..+|.+|+-.||
T Consensus 761 ~aa~aL~~~~~~~~-~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g--~~~~~~~~l~~aL-~d~d~~VR~~Aa~aL~ 832 (897)
T PRK13800 761 AVAKGLATLGAGGA-PAGDAVRALTG----DPDPLVRAAALAALAELG--CPPDDVAAATAAL-RASAWQVRQGAARALA 832 (897)
T ss_pred HHHHHHHHhccccc-hhHHHHHHHhc----CCCHHHHHHHHHHHHhcC--CcchhHHHHHHHh-cCCChHHHHHHHHHHH
Confidence 34444444443332 13444555553 345677777777777662 2222223344444 2344667777777776
Q ss_pred hhhcCCCCHHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHH
Q psy6893 721 LAAMGSARDDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAK 775 (988)
Q Consensus 721 la~~Gs~~~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~ 775 (988)
. +| .++.+..|.+.+..++...+..|+.+||.+ .++.++...+...+.
T Consensus 833 ~--l~--~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---~~~~~a~~~L~~al~ 880 (897)
T PRK13800 833 G--AA--ADVAVPALVEALTDPHLDVRKAAVLALTRW---PGDPAARDALTTALT 880 (897)
T ss_pred h--cc--ccchHHHHHHHhcCCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHh
Confidence 5 23 345566777766322233344666677664 235566555555443
No 15
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=98.04 E-value=5.6e-06 Score=63.39 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=30.0
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHhhhhcchHHH
Q psy6893 355 AAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKI 388 (988)
Q Consensus 355 aA~lglGL~~~Gs~~~~~~~~L~~~~~dt~~E~~ 388 (988)
+|++||||+|+||+++++++.|.|+++|++++++
T Consensus 1 gA~lgLGl~~aGs~~~~~~~~L~~~l~~~~~~~~ 34 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNEEVLDLLRPYLSDTSNEMI 34 (35)
T ss_dssp HHHHHHHHHTTTT--HHHHHHHHHHHCTSSHHHH
T ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHhcccccc
Confidence 5899999999999999999999999999998864
No 16
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=97.68 E-value=5.2e-05 Score=58.08 Aligned_cols=30 Identities=33% Similarity=0.575 Sum_probs=25.0
Q ss_pred HHHHhhHhhhcCCCCHHHHHHHHHhhccCC
Q psy6893 714 GGCLGLGLAAMGSARDDIYEQLKFNLYQDD 743 (988)
Q Consensus 714 gA~LGLGla~~Gs~~~dv~~~L~~~l~~D~ 743 (988)
|||+|||++|+||+|+++++.|.|.++.++
T Consensus 1 gA~lgLGl~~aGs~~~~~~~~L~~~l~~~~ 30 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNEEVLDLLRPYLSDTS 30 (35)
T ss_dssp HHHHHHHHHTTTT--HHHHHHHHHHHCTSS
T ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 799999999999999999999999995433
No 17
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.44 E-value=0.0098 Score=69.72 Aligned_cols=152 Identities=14% Similarity=0.087 Sum_probs=98.4
Q ss_pred hhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcCchhhHHHHHHhhH
Q psy6893 641 TATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEMVRHGGCLGLG 720 (988)
Q Consensus 641 sA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~~~~ir~gA~LGLG 720 (988)
.+.+.+|.... .+...+.+.|. ..+++++.-|+-++|.+.... ....|. ....+.++.||.+|+-||+
T Consensus 136 aal~al~~r~~----~~~~~L~~~L~----d~d~~Vra~A~raLG~l~~~~---a~~~L~-~al~d~~~~VR~aA~~al~ 203 (410)
T TIGR02270 136 IGLAALGAHRH----DPGPALEAALT----HEDALVRAAALRALGELPRRL---SESTLR-LYLRDSDPEVRFAALEAGL 203 (410)
T ss_pred HHHHHHHhhcc----ChHHHHHHHhc----CCCHHHHHHHHHHHHhhcccc---chHHHH-HHHcCCCHHHHHHHHHHHH
Confidence 34455555332 24556667774 567899999999999994322 333343 3346678899999999998
Q ss_pred hhhcCCCCHHHHHHHHHhhccCChhh-HHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCch
Q psy6893 721 LAAMGSARDDIYEQLKFNLYQDDAVT-GEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLE 799 (988)
Q Consensus 721 la~~Gs~~~dv~~~L~~~l~~D~~~~-~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e 799 (988)
+ +|+ ++....|.... .+.... ...++.++++. ++..+++.|.+++.+.. ..+.++.++| .+|...
T Consensus 204 ~--lG~--~~A~~~l~~~~-~~~g~~~~~~l~~~lal~----~~~~a~~~L~~ll~d~~---vr~~a~~AlG--~lg~p~ 269 (410)
T TIGR02270 204 L--AGS--RLAWGVCRRFQ-VLEGGPHRQRLLVLLAVA----GGPDAQAWLRELLQAAA---TRREALRAVG--LVGDVE 269 (410)
T ss_pred H--cCC--HhHHHHHHHHH-hccCccHHHHHHHHHHhC----CchhHHHHHHHHhcChh---hHHHHHHHHH--HcCCcc
Confidence 7 466 66667666533 333332 23445555554 46688888888886543 5566666676 567888
Q ss_pred hHHHHHHHHhcccchhhhhhc
Q psy6893 800 NADDLVRDLCEEKDAILRRSG 820 (988)
Q Consensus 800 ~a~~li~~L~~~~dp~~r~~~ 820 (988)
.+..+++.|.. +++.|.++
T Consensus 270 av~~L~~~l~d--~~~aR~A~ 288 (410)
T TIGR02270 270 AAPWCLEAMRE--PPWARLAG 288 (410)
T ss_pred hHHHHHHHhcC--cHHHHHHH
Confidence 99999998763 34555543
No 18
>KOG2002|consensus
Probab=97.38 E-value=0.82 Score=57.71 Aligned_cols=193 Identities=19% Similarity=0.153 Sum_probs=101.8
Q ss_pred CChHHHHHHHhcccCCCCCCCCCccchhHHHHHhhhccCCCCc-hhHHHHHHhhhhc--CCCchhHHHHHHHHHHHhhcc
Q psy6893 290 GHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAV-INDYLLGQVKDAT--NEDDAVTGEAAGIAMGLVLLG 366 (988)
Q Consensus 290 ~~~~~gl~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~~~-~~d~l~~lL~~~~--~~d~~~~~~aA~lglGL~~~G 366 (988)
++.+.++..+...|.- +| .-.+|+.|||++--+..+. ...-.+.+|.... +..+|++-. .++ +..|.=
T Consensus 213 ~~~~~a~~a~~ralqL-----dp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~--~LA-n~fyfK 283 (1018)
T KOG2002|consen 213 GMSEKALLAFERALQL-----DP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALN--HLA-NHFYFK 283 (1018)
T ss_pred cchhhHHHHHHHHHhc-----Ch-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHH--HHH-HHHhhc
Confidence 4456666666666654 22 5689999999987776642 1223334443332 223333321 222 333333
Q ss_pred CCChhHHHHHHHhhhhcchHH--HHHHHHHHHHHHhcCChhhHHHHHH-HHhhcchh-hhhccchhHHHHHhhhhhhhcc
Q psy6893 367 SKSESAIQDMVAYAKETQHEK--ILRGLAVGISFIMYGQLENADDLVR-DLCEEKDA-ILRRSGMYTIAMAYCVSYLYFD 442 (988)
Q Consensus 367 s~~~~~~~~L~~~~~dt~~E~--~~r~lalgl~~v~~g~~e~a~~li~-~L~~~~d~-~lr~~~~~~~~l~l~Lgll~~g 442 (988)
-.-+.|.+..--.+..|.++. .-...-+|=.+=..|+-|.|=.... .+-.+.+. ++. -+|||-.|+-
T Consensus 284 ~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~---------~~GlgQm~i~ 354 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP---------LVGLGQMYIK 354 (1018)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc---------ccchhHHHHH
Confidence 333334443333344444333 3345566777777788887776544 33333333 222 3688988888
Q ss_pred cc----chhhHHh----hcc-chhHHHHHhhhccCC-CHHHHHHHHHHhcc---CCCchhhHHHHHHHHHHhh
Q psy6893 443 LF----SDLTYRI----VKN-RSGMYTIAMAYCGSG-SNVATKRLLHVAVS---DVNDDVRREAVTALGFILF 502 (988)
Q Consensus 443 ~~----~e~~l~~----~~~-~~~~~~~~~AYaGTG-N~~~Iq~LLhi~~s---~~~~dvrr~AV~~lg~I~~ 502 (988)
+. +..+.+. .|. +.-+.++||-|++.+ .+.++++-..+... -..+| ..|.+.|+++.-
T Consensus 355 ~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d--~~a~l~laql~e 425 (1018)
T KOG2002|consen 355 RGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVD--SEAWLELAQLLE 425 (1018)
T ss_pred hchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHH
Confidence 88 3333343 343 455669999999996 23333322222222 11122 337777777775
No 19
>KOG1858|consensus
Probab=97.37 E-value=0.0014 Score=84.09 Aligned_cols=223 Identities=21% Similarity=0.303 Sum_probs=137.9
Q ss_pred CCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhc-----C-----chhhHHHHHHhhHhhhcCCCCHHHHHHHHHhhc
Q psy6893 671 PTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDA-----T-----NEMVRHGGCLGLGLAAMGSARDDIYEQLKFNLY 740 (988)
Q Consensus 671 s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s-----~-----~~~ir~gA~LGLGla~~Gs~~~dv~~~L~~~l~ 740 (988)
+.++.+--|-|+|++..+-|.-+.-+..++..+..+ . +..++.+|++|+|+.|+||++..+-+.|+.=+-
T Consensus 882 ~~h~~tSvgLLlGlsaS~~GtmD~ki~Kllsvhl~allp~ts~El~i~~~iQtAaIvGlGlLy~gS~h~~iaevL~~Eig 961 (1496)
T KOG1858|consen 882 PKHEMTSVGLLLGLSASYRGTMDAKITKLLSVHLSALLPATSTELNIPLLIQTAAIVGLGLLYAGSAHRRIAEVLLAEIG 961 (1496)
T ss_pred CCCcceeHHHHhhhhHhhcCccchhHHHHHHHHHhhcCCCCcccccCchhhhhhhhhhhhheecCcchHHHHHHHHHHhc
Confidence 567889999999999887777654333333322222 1 247999999999999999999999888876553
Q ss_pred c----CChhhHH----HHHHHhhcccCCCCCHH-------HHHHHHHHHHh------------------------ccc-c
Q psy6893 741 Q----DDAVTGE----AAGIAMGLVLLGSKSES-------AIQDMVAYAKE------------------------TQH-E 780 (988)
Q Consensus 741 ~----D~~~~~e----~AalAlGLI~vGs~n~d-------~i~~ll~~~~e------------------------tq~-e 780 (988)
. |+....| +|++++|||++|.|+.- ....+..|+.. |.. +
T Consensus 962 r~~~~e~~~~rE~Y~laAG~SLGLi~LG~G~~~~g~~d~~~~~~l~~ym~~g~~r~~~~~~~~~~~~~~q~~eg~t~~~d 1041 (1496)
T KOG1858|consen 962 RPPNPENVLEREGYKLAAGFSLGLINLGRGSNLPGMSDLKLVSRLLVYMVGGVRRPIDVPQNEKYRSSTQILEGSTSNLD 1041 (1496)
T ss_pred CCCCcccchhhhhhhhhcCcccceeeeccCCCCcchhcccchHHHHHHhhccccccccccccccccchhhhccCceeeee
Confidence 2 2223344 69999999999998753 34556666541 111 2
Q ss_pred hhhhHHHHHHHHHhcCCc--hhHHHH------HHHHhcccc-----------------------------hh--------
Q psy6893 781 KILRGLAVGISFIMYGQL--ENADDL------VRDLCEEKD-----------------------------AI-------- 815 (988)
Q Consensus 781 ~i~R~lalgLgLi~~Gr~--e~a~~l------i~~L~~~~d-----------------------------p~-------- 815 (988)
-...+.+++|+++|+--. .-++.+ +.....-+| ++
T Consensus 1042 v~~pGAviAl~mmflktnn~~Ia~~l~~p~t~yll~~vrPd~l~lR~~a~~lImW~~I~p~~~wv~~~vp~~ir~~~~~~ 1121 (1496)
T KOG1858|consen 1042 VTAPGAVIALGMMFLKTNNFEIANALRPPDTRYLLDFVRPDFLLLRVIARNLIMWDRIKPDYDWVKSQVPDVIREQADLQ 1121 (1496)
T ss_pred cCCccHHHHHHHHHHHhchHHHHhhcCCCchhhHHhhcchHHHHHHHHHhhhhHHHhhCchHHHHHhhCCHHHHHhhhhh
Confidence 223588899999886332 211110 000000000 11
Q ss_pred --------------hhhhcHHHHHHHHcCCCChhHHHHHHHHHHH-------------------------hhhhhhhhhh
Q psy6893 816 --------------LRRSGMYTIAMAYCGSGSNVATKRLLHDAIL-------------------------RRSGMYTIAM 856 (988)
Q Consensus 816 --------------~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~-------------------------~~lG~alia~ 856 (988)
.-.++++.+++-||||||. ++...|+--.. ..+=+.-++|
T Consensus 1122 ~dvd~~tl~q~~~~~~aGac~slgLrfagt~n~-~aknil~s~v~~fl~l~~~P~~~~~~~~~~~tv~~cl~v~i~sls~ 1200 (1496)
T KOG1858|consen 1122 EDVDLETLSQAYVNILAGACFSLGLRFAGTGNL-KAKNILNSFVDDFLRLCSLPLKSNDGRVTAVTVERCLSVLIISLSM 1200 (1496)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhcccCCh-hHHHHHHHHHHHHHHHhhccCccCCCcccchhHHHHHHHHHHHHHH
Confidence 1235577889999999998 55555554221 1122344567
Q ss_pred hccCCCchHHHHH--hhhhhccCCChhhh----hhHHhhhhhhhh
Q psy6893 857 AYCGSGSNVATKR--LLHVAVSDVNDDVR----REAVTALGFILF 895 (988)
Q Consensus 857 g~~~tgn~~air~--ll~~~~sd~~~~vr----raa~~alg~i~~ 895 (988)
.-.|+|+-.+.|. ++|.-.+ +..+++ -++=+|+|++..
T Consensus 1201 vmagSgdleVlr~~r~Lr~~~~-~~~~~~yg~~ma~h~alGil~l 1244 (1496)
T KOG1858|consen 1201 VMAGSGDLEVLRRLRFLRSRTS-PYGHMNYGAQMATHMALGILFL 1244 (1496)
T ss_pred HHhhcCchHHHHHHHHHHHhcc-CCCcccchhHHHHHHhhceeEe
Confidence 7788999999875 5666555 444555 455566776654
No 20
>KOG4364|consensus
Probab=97.24 E-value=0.00085 Score=79.59 Aligned_cols=13 Identities=15% Similarity=0.143 Sum_probs=6.5
Q ss_pred hhcccCCCCCHHH
Q psy6893 754 MGLVLLGSKSESA 766 (988)
Q Consensus 754 lGLI~vGs~n~d~ 766 (988)
-++.+.++...-+
T Consensus 155 ~~~~~~~~s~~vV 167 (811)
T KOG4364|consen 155 RDLKIMPSSVRVV 167 (811)
T ss_pred cCcccCCCcchhH
Confidence 3555556544333
No 21
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.56 E-value=0.1 Score=61.35 Aligned_cols=208 Identities=17% Similarity=0.065 Sum_probs=107.5
Q ss_pred HHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHHHHHHHH
Q psy6893 657 ALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDDIYEQLK 736 (988)
Q Consensus 657 ~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~dv~~~L~ 736 (988)
++..|-..|. +.++.++.++..|||.| +. ..+...|...+ .+.+..+|..++-.+|. .+.+.+..|+
T Consensus 87 ~~~~L~~~L~----d~~~~vr~aaa~ALg~i--~~-~~a~~~L~~~L-~~~~p~vR~aal~al~~-----r~~~~~~~L~ 153 (410)
T TIGR02270 87 DLRSVLAVLQ----AGPEGLCAGIQAALGWL--GG-RQAEPWLEPLL-AASEPPGRAIGLAALGA-----HRHDPGPALE 153 (410)
T ss_pred HHHHHHHHhc----CCCHHHHHHHHHHHhcC--Cc-hHHHHHHHHHh-cCCChHHHHHHHHHHHh-----hccChHHHHH
Confidence 4555555663 34555777777777776 22 11344444444 34455666666555544 3445567777
Q ss_pred HhhccCChhh-HHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhH-HHHHHHHHhcCCchhHHHHHHHHhcccch
Q psy6893 737 FNLYQDDAVT-GEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRG-LAVGISFIMYGQLENADDLVRDLCEEKDA 814 (988)
Q Consensus 737 ~~l~~D~~~~-~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~-lalgLgLi~~Gr~e~a~~li~~L~~~~dp 814 (988)
+.|. |+... ...|.-++|-+ | ..+.+..+...+ .+++.-.|. .+.+++++ |..+..+.++... +..++
T Consensus 154 ~~L~-d~d~~Vra~A~raLG~l--~--~~~a~~~L~~al--~d~~~~VR~aA~~al~~l--G~~~A~~~l~~~~-~~~g~ 223 (410)
T TIGR02270 154 AALT-HEDALVRAAALRALGEL--P--RRLSESTLRLYL--RDSDPEVRFAALEAGLLA--GSRLAWGVCRRFQ-VLEGG 223 (410)
T ss_pred HHhc-CCCHHHHHHHHHHHHhh--c--cccchHHHHHHH--cCCCHHHHHHHHHHHHHc--CCHhHHHHHHHHH-hccCc
Confidence 7774 33332 33455566665 3 234444444432 223333443 33345433 4555555555423 22333
Q ss_pred hhhhhcHHHHHHHHcCCCChhHHHHHHHHHH--HhhhhhhhhhhhccCCCchHHHHHhhhhhccCCChhhhhhHHhhhhh
Q psy6893 815 ILRRSGMYTIAMAYCGSGSNVATKRLLHDAI--LRRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGF 892 (988)
Q Consensus 815 ~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~--~~~lG~alia~g~~~tgn~~air~ll~~~~sd~~~~vrraa~~alg~ 892 (988)
..+.. ....++..| ++ .+...|.... ..+.-.++.++|. .|...++..|+..+..+ .++|.|-+++..
T Consensus 224 ~~~~~--l~~~lal~~--~~-~a~~~L~~ll~d~~vr~~a~~AlG~--lg~p~av~~L~~~l~d~---~~aR~A~eA~~~ 293 (410)
T TIGR02270 224 PHRQR--LLVLLAVAG--GP-DAQAWLRELLQAAATRREALRAVGL--VGDVEAAPWCLEAMREP---PWARLAGEAFSL 293 (410)
T ss_pred cHHHH--HHHHHHhCC--ch-hHHHHHHHHhcChhhHHHHHHHHHH--cCCcchHHHHHHHhcCc---HHHHHHHHHHHH
Confidence 32322 222333332 22 2222222221 1233345566776 58899999999987433 599999999988
Q ss_pred hhhhh
Q psy6893 893 ILFRK 897 (988)
Q Consensus 893 i~~~n 897 (988)
|.--+
T Consensus 294 ItG~~ 298 (410)
T TIGR02270 294 ITGMD 298 (410)
T ss_pred hhCCC
Confidence 87644
No 22
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.50 E-value=0.48 Score=53.58 Aligned_cols=151 Identities=19% Similarity=0.199 Sum_probs=84.6
Q ss_pred chhhhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcCchhhHHHHHH
Q psy6893 638 AKLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEMVRHGGCL 717 (988)
Q Consensus 638 ~kfsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~~~~ir~gA~L 717 (988)
-++.+..+||.+... .+...+.+++. ..+..++.-|..+||.+...+. .+...+ .......+..+|..++.
T Consensus 165 ~r~~a~~~l~~~~~~---~~~~~l~~~l~----~~~~~vr~~Aa~aL~~~~~~~~-~~~~~l-~~~~~~~~~~vr~~~~~ 235 (335)
T COG1413 165 VRAAAAEALGELGDP---EAIPLLIELLE----DEDADVRRAAASALGQLGSENV-EAADLL-VKALSDESLEVRKAALL 235 (335)
T ss_pred HHHHHHHHHHHcCCh---hhhHHHHHHHh----CchHHHHHHHHHHHHHhhcchh-hHHHHH-HHHhcCCCHHHHHHHHH
Confidence 456788888877654 56777777775 4456899999999999955431 222333 33345567799999999
Q ss_pred hhHhhhcCCCCHHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCC
Q psy6893 718 GLGLAAMGSARDDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQ 797 (988)
Q Consensus 718 GLGla~~Gs~~~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr 797 (988)
.||.. | .++....|...+..++......++++++ + .+.............+..+........++..++.
T Consensus 236 ~l~~~--~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 236 ALGEI--G--DEEAVDALAKALEDEDVILALLAAAALG----A---LDLAEAALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred Hhccc--C--cchhHHHHHHHHhccchHHHHHHHHHhc----c---cCchhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 99874 3 3344555655554333333334555555 1 1222222222223334444433333333555555
Q ss_pred chhHHHHHHHH
Q psy6893 798 LENADDLVRDL 808 (988)
Q Consensus 798 ~e~a~~li~~L 808 (988)
.....+.+-..
T Consensus 305 ~~~~~a~~~~~ 315 (335)
T COG1413 305 EKAVAALLLAL 315 (335)
T ss_pred cchHHHHHHHh
Confidence 55544444443
No 23
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.35 E-value=2.2 Score=58.80 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=47.8
Q ss_pred HHHhhhccCCCHH---------HHHHHHHHhccCCCchhhHHHHHHHHHHhhcCcc-ccccccCCCCchhHHhhccchh
Q psy6893 460 TIAMAYCGSGSNV---------ATKRLLHVAVSDVNDDVRREAVTALGFILFRTLF-YVAPACTRSPWPGVISLLDDPM 528 (988)
Q Consensus 460 ~~~~AYaGTGN~~---------~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~~~~~~-~~g~~~~~~~~p~ai~lL~~~~ 528 (988)
+..+.|.-.|+.. .|+.|++++.+. ++.+|+.|+..|+.|.-+++. +-.+..+ -|+|.-+.||..+.
T Consensus 425 v~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIiea-GaIP~LV~LL~s~~ 501 (2102)
T PLN03200 425 IRALSSLCCGKGGLWEALGGREGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITAA-GGIPPLVQLLETGS 501 (2102)
T ss_pred HHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHcCCC
Confidence 6777777777665 577888888654 568899999999999876653 2222223 48899999887543
No 24
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.93 E-value=0.3 Score=55.25 Aligned_cols=155 Identities=21% Similarity=0.173 Sum_probs=98.1
Q ss_pred HHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHHHHHHH
Q psy6893 656 EALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDDIYEQL 735 (988)
Q Consensus 656 ~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~dv~~~L 735 (988)
.....+..++- +.+..+|.+|.+.+|.+.. .+++..|.+.+ .+.+..+|..|..+||- -+++..+..|
T Consensus 43 ~~~~~~~~~l~----~~~~~vr~~aa~~l~~~~~---~~av~~l~~~l-~d~~~~vr~~a~~aLg~----~~~~~a~~~l 110 (335)
T COG1413 43 EAADELLKLLE----DEDLLVRLSAAVALGELGS---EEAVPLLRELL-SDEDPRVRDAAADALGE----LGDPEAVPPL 110 (335)
T ss_pred hhHHHHHHHHc----CCCHHHHHHHHHHHhhhch---HHHHHHHHHHh-cCCCHHHHHHHHHHHHc----cCChhHHHHH
Confidence 56677777774 4478999999999887721 22555555544 44567899999998875 5578888889
Q ss_pred HHhhcc-CChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcc----------cchhhhHHHHHHHHHhcCCchhHHHH
Q psy6893 736 KFNLYQ-DDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQ----------HEKILRGLAVGISFIMYGQLENADDL 804 (988)
Q Consensus 736 ~~~l~~-D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq----------~e~i~R~lalgLgLi~~Gr~e~a~~l 804 (988)
+..+.. .+......++.++|.+ | +...+..++..+.+.. .....|..++.. |.-+|-++....+
T Consensus 111 i~~l~~d~~~~vR~~aa~aL~~~--~--~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~-l~~~~~~~~~~~l 185 (335)
T COG1413 111 VELLENDENEGVRAAAARALGKL--G--DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA-LGELGDPEAIPLL 185 (335)
T ss_pred HHHHHcCCcHhHHHHHHHHHHhc--C--chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHH-HHHcCChhhhHHH
Confidence 888864 3344455788888876 4 4555777777665433 111234444433 5556777787788
Q ss_pred HHHHhcccchhhhhhcHHHHHHHHcC
Q psy6893 805 VRDLCEEKDAILRRSGMYTIAMAYCG 830 (988)
Q Consensus 805 i~~L~~~~dp~~r~~~~~~lslAyaG 830 (988)
++.+.... ...|... +.++...|
T Consensus 186 ~~~l~~~~-~~vr~~A--a~aL~~~~ 208 (335)
T COG1413 186 IELLEDED-ADVRRAA--ASALGQLG 208 (335)
T ss_pred HHHHhCch-HHHHHHH--HHHHHHhh
Confidence 87766433 3455553 33444444
No 25
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.82 E-value=0.034 Score=49.95 Aligned_cols=87 Identities=22% Similarity=0.334 Sum_probs=50.9
Q ss_pred HHHHHhhhhcchHHHHHHHHHHHHHHhcCChhhHHHHHHHHhhcchhhhhccchhHHHHHhhhhhhhccccchhhHHhhc
Q psy6893 374 QDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCVSYLYFDLFSDLTYRIVK 453 (988)
Q Consensus 374 ~~L~~~~~dt~~E~~~r~lalgl~~v~~g~~e~a~~li~~L~~~~d~~lr~~~~~~~~l~l~Lgll~~g~~~e~~l~~~~ 453 (988)
+.|+..+.+.....+++..+..|+ ..++++....+++.+ .++++.+|..+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~--~~~~~~~~~~L~~~l-~d~~~~vr~~a--------------------------- 51 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALG--ELGDPEAIPALIELL-KDEDPMVRRAA--------------------------- 51 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHH--CCTHHHHHHHHHHHH-TSSSHHHHHHH---------------------------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHH--HcCCHhHHHHHHHHH-cCCCHHHHHHH---------------------------
Confidence 445555533333333333333333 445556666666655 66677777632
Q ss_pred cchhHHHHHhhhccCCCHHHHHHHHHHhccCCCchhhHHHHHHHH
Q psy6893 454 NRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALG 498 (988)
Q Consensus 454 ~~~~~~~~~~AYaGTGN~~~Iq~LLhi~~s~~~~dvrr~AV~~lg 498 (988)
+.+++..| +..+++.|.+.+.++.++.+|..|+.+||
T Consensus 52 ------~~aL~~i~--~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 52 ------ARALGRIG--DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ------HHHHHCCH--HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ------HHHHHHhC--CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 45556664 57788888888877766667888888776
No 26
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.75 E-value=0.046 Score=49.08 Aligned_cols=71 Identities=23% Similarity=0.302 Sum_probs=33.7
Q ss_pred HHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHh
Q psy6893 698 YLLGQVKDATNEMVRHGGCLGLGLAAMGSARDDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKE 776 (988)
Q Consensus 698 ~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~e 776 (988)
.|++.+.++++..+|.-|+..||- .++++++..|...+..++......|+.++|.+ | +.+++..|.+.+.+
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~----~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i--~--~~~~~~~L~~~l~~ 73 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGE----LGDPEAIPALIELLKDEDPMVRRAAARALGRI--G--DPEAIPALIKLLQD 73 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHC----CTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC--H--HHHTHHHHHHHHTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh--C--CHHHHHHHHHHHcC
Confidence 344444444555555555555552 23445555555555322222333455555554 2 34455555554433
No 27
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.58 E-value=9.1 Score=47.63 Aligned_cols=211 Identities=12% Similarity=0.038 Sum_probs=99.1
Q ss_pred ccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCC-
Q psy6893 650 HRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSAR- 728 (988)
Q Consensus 650 h~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~- 728 (988)
..|+.++++..+...+.. ...+...-..++..+...|..+++...+.......++.. -+...+|.++...++
T Consensus 647 ~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 647 VMKNYAKAITSLKRALEL----KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAA---LGFELEGDLYLRQKDY 719 (899)
T ss_pred HcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCh---HHHHHHHHHHHHCCCH
Confidence 378888888888777641 112233333333334444444444444432222222111 122334445544444
Q ss_pred HHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHH-HHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHH
Q psy6893 729 DDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAI-QDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRD 807 (988)
Q Consensus 729 ~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i-~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~ 807 (988)
++.+..+...+..++.. .+.+.++.+....|+.+-. ..+-+++.....+ ..-...++..+...|+.+.+..+++.
T Consensus 720 ~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 720 PAAIQAYRKALKRAPSS---QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND-AVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHHHHHhhCCCc---hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 33455555444322221 1222333333344444433 3333333322222 22223333334556888888888877
Q ss_pred HhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHH---------hhhhhhhhhhhccCCCchHHHHHhhhhhccCC
Q psy6893 808 LCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAIL---------RRSGMYTIAMAYCGSGSNVATKRLLHVAVSDV 878 (988)
Q Consensus 808 L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~---------~~lG~alia~g~~~tgn~~air~ll~~~~sd~ 878 (988)
+.....+. ...+..++..|...|+ .+...++..... ..+|.++..+|.- ..|+..+-+.+..+|
T Consensus 796 ~~~~~p~~--~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 796 VVKKAPDN--AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEA----DRALPLLRKAVNIAP 868 (899)
T ss_pred HHHhCCCC--HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH----HHHHHHHHHHHhhCC
Confidence 76443221 2223445566666667 445555555543 2456666565554 556666655555444
No 28
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.30 E-value=11 Score=46.86 Aligned_cols=212 Identities=15% Similarity=0.064 Sum_probs=101.7
Q ss_pred cccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCC--chHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCC
Q psy6893 649 IHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANH--GAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGS 726 (988)
Q Consensus 649 Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~--~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs 726 (988)
...|+.++++..+..++... + .. .-+.+.+|.+.... ..+++..+...+...++.. .+...+|.++.-.
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~--~--~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 648 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAA--P--DS--PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA---LALLLLADAYAVM 648 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcC--C--CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHc
Confidence 34678888888888776411 1 11 12344444444333 3445555544333222221 2334455555333
Q ss_pred CC-HHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHH
Q psy6893 727 AR-DDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLV 805 (988)
Q Consensus 727 ~~-~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li 805 (988)
++ ++....+...+..++... .+-+.++.+..-.++.+-...+.+.+.+...........+|..+...|+.+.+...+
T Consensus 649 ~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 649 KNYAKAITSLKRALELKPDNT--EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred CCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33 334444444443222211 122233333334445554444444443322222222333444445566666666666
Q ss_pred HHHhcc-cchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHH---------hhhhhhhhhhhccCCCchHHHHHhhhhhc
Q psy6893 806 RDLCEE-KDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAIL---------RRSGMYTIAMAYCGSGSNVATKRLLHVAV 875 (988)
Q Consensus 806 ~~L~~~-~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~---------~~lG~alia~g~~~tgn~~air~ll~~~~ 875 (988)
+..... +++ ..++.++..|...|+.....+.+..+.. ..+|.++..+|+. ..|+..+-.++.
T Consensus 727 ~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~----~~A~~~~~~~~~ 798 (899)
T TIGR02917 727 RKALKRAPSS----QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDY----DKAIKHYRTVVK 798 (899)
T ss_pred HHHHhhCCCc----hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH----HHHHHHHHHHHH
Confidence 554432 222 3345566667777777776666666553 3455555556654 556666666555
Q ss_pred cCCC
Q psy6893 876 SDVN 879 (988)
Q Consensus 876 sd~~ 879 (988)
.+|+
T Consensus 799 ~~p~ 802 (899)
T TIGR02917 799 KAPD 802 (899)
T ss_pred hCCC
Confidence 5553
No 29
>KOG2572|consensus
Probab=94.12 E-value=0.022 Score=64.82 Aligned_cols=8 Identities=63% Similarity=0.696 Sum_probs=3.6
Q ss_pred chhhhHHH
Q psy6893 780 EKILRGLA 787 (988)
Q Consensus 780 e~i~R~la 787 (988)
-+|.|.++
T Consensus 354 GKIaR~LA 361 (498)
T KOG2572|consen 354 GKIARSLA 361 (498)
T ss_pred cHHHHHHH
Confidence 34444443
No 30
>KOG1824|consensus
Probab=93.47 E-value=31 Score=44.34 Aligned_cols=230 Identities=17% Similarity=0.204 Sum_probs=118.6
Q ss_pred ccchhhhhhhhcccccCChHHHHH-----HHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcCc--
Q psy6893 636 NWAKLTATASLGVIHRGHETEALA-----HMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATN-- 708 (988)
Q Consensus 636 ~w~kfsA~ASLG~Ih~gn~~~~l~-----~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~~-- 708 (988)
+--+..|.-|+|.|..+-...+.. ++..| .+.++.++..|-||||-+..|+-+.-+..++.++.+.+.
T Consensus 833 ~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf-----~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~Q 907 (1233)
T KOG1824|consen 833 DSIKVFALLSLGELGRRKDLSPQNELKDTIIEAF-----NSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQ 907 (1233)
T ss_pred hhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHc-----CCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhH
Confidence 345678899999998865332222 22322 256788999999999999877766677778887765532
Q ss_pred hhhHHHHHHhhHhhhcC---CCCHHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHH--hcccchhh
Q psy6893 709 EMVRHGGCLGLGLAAMG---SARDDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAK--ETQHEKIL 783 (988)
Q Consensus 709 ~~ir~gA~LGLGla~~G---s~~~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~--etq~e~i~ 783 (988)
...-|.--.-++-+... +.-+++...|..-......-++...|-.+|..-+ -+++- ++.-+. .+......
T Consensus 908 yLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l--~epes---LlpkL~~~~~S~a~~~ 982 (1233)
T KOG1824|consen 908 YLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVL--IEPES---LLPKLKLLLRSEASNT 982 (1233)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHh--CChHH---HHHHHHHHhcCCCcch
Confidence 35555554455444333 2234455555554432222223355666666422 23332 222222 13344555
Q ss_pred hHHHHHH-HHHhcCCchhHHHHHH-------HHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHHhhhhhhhhh
Q psy6893 784 RGLAVGI-SFIMYGQLENADDLVR-------DLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAILRRSGMYTIA 855 (988)
Q Consensus 784 R~lalgL-gLi~~Gr~e~a~~li~-------~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~~~lG~alia 855 (988)
|..+++. -+.---+..-+|+++. .+..++|+-.|+.+..++.- +-..-+--|-.++-..++++.
T Consensus 983 rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nS--aahNKpslIrDllpeLLp~Ly------ 1054 (1233)
T KOG1824|consen 983 RSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNS--AAHNKPSLIRDLLPELLPLLY------ 1054 (1233)
T ss_pred hhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH--HHccCHhHHHHHHHHHHHHHH------
Confidence 6555543 1111223344555554 23344555556555444433 333334334444444443322
Q ss_pred hhccCCCchHHHHH-hhhhh-------ccCCChhhhhhHHhhh
Q psy6893 856 MAYCGSGSNVATKR-LLHVA-------VSDVNDDVRREAVTAL 890 (988)
Q Consensus 856 ~g~~~tgn~~air~-ll~~~-------~sd~~~~vrraa~~al 890 (988)
++..||+ ++|-. +-|..-|+|.+|.+++
T Consensus 1055 -------~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcm 1090 (1233)
T KOG1824|consen 1055 -------SETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECM 1090 (1233)
T ss_pred -------HhhhhhHhhhhhhcccCccccccchHHHHHHHHHHH
Confidence 2333332 33322 1233567888888887
No 31
>PTZ00121 MAEBL; Provisional
Probab=93.15 E-value=0.24 Score=64.04 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHH
Q psy6893 388 ILRGLAVGISFIMYGQLENADD 409 (988)
Q Consensus 388 ~~r~lalgl~~v~~g~~e~a~~ 409 (988)
-..|+||--+++-+|.-+.-..
T Consensus 718 ~kSG~AM~~G~l~~CP~~~n~e 739 (2084)
T PTZ00121 718 DKSGIAMHHGFLASCPIDENEE 739 (2084)
T ss_pred cchhhHHhcCCcccCCCcccHH
Confidence 3456666666666665444433
No 32
>KOG0166|consensus
Probab=92.35 E-value=2.9 Score=50.34 Aligned_cols=208 Identities=16% Similarity=0.123 Sum_probs=132.9
Q ss_pred HHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHH-------HHHHHHHhhccCChhhHHHHHHHhhcccCCCCC-----
Q psy6893 696 NDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDD-------IYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKS----- 763 (988)
Q Consensus 696 ~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~d-------v~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n----- 763 (988)
+..|...+....++.++..|+-.|=-++.||.... +.-.++.++++.+....|.|..|+|-|---+-.
T Consensus 111 v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~v 190 (514)
T KOG0166|consen 111 VPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYV 190 (514)
T ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHH
Confidence 44555666556667889999998866655554332 223456667667777788999999998433211
Q ss_pred --HHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCc-----hhHHHHHH---HHhcccchhhhhhcHHHHHHHHcCCCC
Q psy6893 764 --ESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQL-----ENADDLVR---DLCEEKDAILRRSGMYTIAMAYCGSGS 833 (988)
Q Consensus 764 --~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~-----e~a~~li~---~L~~~~dp~~r~~~~~~lslAyaGtGn 833 (988)
..++..++.++.....-.+.|-+.-.|.-++-|+. +.+..++. .|..+.|+... .....+++|..-|-
T Consensus 191 l~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl--~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 191 LSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVL--TDACWALSYLTDGS 268 (514)
T ss_pred HhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHH--HHHHHHHHHHhcCC
Confidence 11334444444332223466888888888888885 44444444 44455677655 34556778988777
Q ss_pred hhHHHHHHHH--------HHH----hhhhhhhhhhhccCCCchH---------HHHHhhhhhccCCChhhhhhHHhhhhh
Q psy6893 834 NVATKRLLHD--------AIL----RRSGMYTIAMAYCGSGSNV---------ATKRLLHVAVSDVNDDVRREAVTALGF 892 (988)
Q Consensus 834 vl~iq~lL~~--------~~~----~~lG~alia~g~~~tgn~~---------air~ll~~~~sd~~~~vrraa~~alg~ 892 (988)
..+||-++.- ++. -++-=|+-+.|.+-||+.. ++..|.+++.+.+.+++|..|++.++-
T Consensus 269 ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSN 348 (514)
T KOG0166|consen 269 NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISN 348 (514)
T ss_pred hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 7777765543 211 2232345555665566654 455566677767888999999999999
Q ss_pred hhhhhhhhhHhhh
Q psy6893 893 ILFRKKRTRRKKK 905 (988)
Q Consensus 893 i~~~npeq~pk~~ 905 (988)
|...+++++..+.
T Consensus 349 ItAG~~~qiqaVi 361 (514)
T KOG0166|consen 349 ITAGNQEQIQAVI 361 (514)
T ss_pred hhcCCHHHHHHHH
Confidence 9999999876653
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=92.27 E-value=12 Score=44.99 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=71.9
Q ss_pred HHHHhcccCCCCCCCCCccchhHHHHHhhhccCCCCchhHHHHHHhhhhcCCCchhHHHHHHHHHHHhhccCCCh--h-H
Q psy6893 296 LAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEDDAVTGEAAGIAMGLVLLGSKSE--S-A 372 (988)
Q Consensus 296 l~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~~~~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~~~Gs~~~--~-~ 372 (988)
...|.+-|-+ +++|+++=||-.++-+. . ....+++...+...+.++++.+|..|++++.-+|--..+. . +
T Consensus 81 ~n~l~kdl~~----~n~~~~~lAL~~l~~i~--~-~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~ 153 (526)
T PF01602_consen 81 INSLQKDLNS----PNPYIRGLALRTLSNIR--T-PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDEL 153 (526)
T ss_dssp HHHHHHHHCS----SSHHHHHHHHHHHHHH---S-HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGH
T ss_pred HHHHHHhhcC----CCHHHHHHHHhhhhhhc--c-cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3444555554 58899999999999876 2 2366667777777777788999999999998887653332 2 5
Q ss_pred HHHHHHhhhhcchHHHHHHHHHHHHHHhcCChh----hHHHHHHHHh
Q psy6893 373 IQDMVAYAKETQHEKILRGLAVGISFIMYGQLE----NADDLVRDLC 415 (988)
Q Consensus 373 ~~~L~~~~~dt~~E~~~r~lalgl~~v~~g~~e----~a~~li~~L~ 415 (988)
++.|...+.|+++.+...++.+-... ..+++ ....++..|.
T Consensus 154 ~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~ 198 (526)
T PF01602_consen 154 IPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILC 198 (526)
T ss_dssp HHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHH
T ss_pred HHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhh
Confidence 67777878777766655544433322 33333 3444555543
No 34
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=92.09 E-value=33 Score=41.13 Aligned_cols=104 Identities=14% Similarity=0.029 Sum_probs=53.9
Q ss_pred hccc-chhhhhhhhcccccCChHH--HHHHHhhcCCCCCCCCCccchhhHHHHHhhhcc-CCchHHHHHHHHHhhhcCch
Q psy6893 634 ATNW-AKLTATASLGVIHRGHETE--ALAHMQSYLPRETGPTSGYYEGGGLYALGLIHA-NHGAVINDYLLGQVKDATNE 709 (988)
Q Consensus 634 ~~~w-~kfsA~ASLG~Ih~gn~~~--~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~a-g~~~~~~~~Ll~~l~~s~~~ 709 (988)
.+++ -+|.+.-+|-.|..-++.. .....-.++. ++++.++|.-++--+-.+.. .+...++..|...+.+..+.
T Consensus 278 s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~---~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~ 354 (526)
T PF01602_consen 278 SSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLL---YDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDP 354 (526)
T ss_dssp SSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHH---CSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--H
T ss_pred cccchhehhHHHHHHHhhcccchhhhhhhhhhheec---CCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccch
Confidence 4444 5666666666665544111 1111122332 25677888888776665522 12224667777776555455
Q ss_pred hhHHHHHHhhHhhhc--CCCCHHHHHHHHHhhc
Q psy6893 710 MVRHGGCLGLGLAAM--GSARDDIYEQLKFNLY 740 (988)
Q Consensus 710 ~ir~gA~LGLGla~~--Gs~~~dv~~~L~~~l~ 740 (988)
.++.-++..+|.+.. ....+..++.|..++.
T Consensus 355 ~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~ 387 (526)
T PF01602_consen 355 DFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLE 387 (526)
T ss_dssp HHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhccCchHHHHHHHHHHhhh
Confidence 577777776665431 2222445566666664
No 35
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.98 E-value=18 Score=44.37 Aligned_cols=100 Identities=16% Similarity=0.170 Sum_probs=65.2
Q ss_pred ccchhhhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhc-CchhhHHH
Q psy6893 636 NWAKLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDA-TNEMVRHG 714 (988)
Q Consensus 636 ~w~kfsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s-~~~~ir~g 714 (988)
.+.+....=+||-+.. + .++..|.+|+..+ ...+.++|--|++||--+...+...+...|+..+.+. .+..+|+.
T Consensus 460 ~~~~~~~LkaLGN~g~--~-~~i~~l~~~l~~~-~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 460 EEEIQLYLKALGNAGH--P-SSIKVLEPYLEGA-EPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred chheeeHHHhhhccCC--h-hHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHH
Confidence 3556666667775544 3 5778888888722 3446688888888888664344445666666666554 34578888
Q ss_pred HHHhhHhhhcCC-CCHHHHHHHHHhhccCC
Q psy6893 715 GCLGLGLAAMGS-ARDDIYEQLKFNLYQDD 743 (988)
Q Consensus 715 A~LGLGla~~Gs-~~~dv~~~L~~~l~~D~ 743 (988)
|++.| |-+ ....++..+...+..|.
T Consensus 536 A~~~l----m~t~P~~~~l~~ia~~l~~E~ 561 (574)
T smart00638 536 AVLVL----METKPSVALLQRIAELLNKEP 561 (574)
T ss_pred HHHHH----HhcCCCHHHHHHHHHHHhhcC
Confidence 88877 455 56667777777664433
No 36
>KOG2573|consensus
Probab=91.58 E-value=0.11 Score=59.19 Aligned_cols=8 Identities=50% Similarity=0.742 Sum_probs=4.0
Q ss_pred hHHhhccc
Q psy6893 519 GVISLLDD 526 (988)
Q Consensus 519 ~ai~lL~~ 526 (988)
.+|+||.+
T Consensus 171 qaI~lLDq 178 (498)
T KOG2573|consen 171 QAIALLDQ 178 (498)
T ss_pred HHHHHHHH
Confidence 44555554
No 37
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=90.66 E-value=0.79 Score=59.42 Aligned_cols=11 Identities=36% Similarity=0.878 Sum_probs=5.1
Q ss_pred HHhhhccCCCH
Q psy6893 461 IAMAYCGSGSN 471 (988)
Q Consensus 461 ~~~AYaGTGN~ 471 (988)
+.|.|+..|+.
T Consensus 91 IVMEY~~gGSL 101 (1021)
T PTZ00266 91 ILMEFCDAGDL 101 (1021)
T ss_pred EEEeCCCCCcH
Confidence 34455555543
No 38
>KOG2573|consensus
Probab=90.41 E-value=0.097 Score=59.75 Aligned_cols=10 Identities=40% Similarity=0.408 Sum_probs=5.5
Q ss_pred ccchhhhHHH
Q psy6893 778 QHEKILRGLA 787 (988)
Q Consensus 778 q~e~i~R~la 787 (988)
..-.|+|++|
T Consensus 366 NKGRISRyLA 375 (498)
T KOG2573|consen 366 NKGRISRYLA 375 (498)
T ss_pred ccchHHHHHH
Confidence 3455666655
No 39
>KOG2171|consensus
Probab=90.39 E-value=71 Score=41.92 Aligned_cols=136 Identities=15% Similarity=0.138 Sum_probs=77.3
Q ss_pred HHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchH-------HHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCC--
Q psy6893 657 ALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAV-------INDYLLGQVKDATNEMVRHGGCLGLGLAAMGSA-- 727 (988)
Q Consensus 657 ~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~-------~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~-- 727 (988)
.+..+..++. |.+.+-|-.||+||+-|.-|+..- ++..+++.+ +.+++.||++||..+|...-.=.
T Consensus 349 ~~~~l~~~l~----S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l-~DphprVr~AA~naigQ~stdl~p~ 423 (1075)
T KOG2171|consen 349 LFEALEAMLQ----STEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGL-NDPHPRVRYAALNAIGQMSTDLQPE 423 (1075)
T ss_pred HHHHHHHHhc----CCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHhhhhhhcHH
Confidence 3455556665 678899999999999998888642 455555555 44678999999999998532111
Q ss_pred -----CHHHHHHHHHhhccCChhh-H-H--HHHHHhhcccCCCCCHHHHHHHHHHHHh--------cccchhhhHHHHHH
Q psy6893 728 -----RDDIYEQLKFNLYQDDAVT-G-E--AAGIAMGLVLLGSKSESAIQDMVAYAKE--------TQHEKILRGLAVGI 790 (988)
Q Consensus 728 -----~~dv~~~L~~~l~~D~~~~-~-e--~AalAlGLI~vGs~n~d~i~~ll~~~~e--------tq~e~i~R~lalgL 790 (988)
.+.+...|...+ |+... . . +|+...+ |.--|..++++.++.-+.+ .......-.++-+|
T Consensus 424 iqk~~~e~l~~aL~~~l--d~~~~~rV~ahAa~al~n--f~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaI 499 (1075)
T KOG2171|consen 424 IQKKHHERLPPALIALL--DSTQNVRVQAHAAAALVN--FSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAI 499 (1075)
T ss_pred HHHHHHHhccHHHHHHh--cccCchHHHHHHHHHHHH--HHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 112223444444 33221 2 2 2222222 2334566777766654443 22233334555567
Q ss_pred HHHhcCCchhH
Q psy6893 791 SFIMYGQLENA 801 (988)
Q Consensus 791 gLi~~Gr~e~a 801 (988)
|-+-.--++..
T Consensus 500 asvA~AA~~~F 510 (1075)
T KOG2171|consen 500 ASVADAAQEKF 510 (1075)
T ss_pred HHHHHHHhhhh
Confidence 66655444443
No 40
>KOG0166|consensus
Probab=90.19 E-value=24 Score=42.84 Aligned_cols=270 Identities=17% Similarity=0.160 Sum_probs=144.0
Q ss_pred HHHHHHHHhccCCCchhhHHHHHHHHHHhhcCccccccccCCCCchhHHhhccchhhhhhHhhHHHhhhhcccCCCCchh
Q psy6893 473 ATKRLLHVAVSDVNDDVRREAVTALGFILFRTLFYVAPACTRSPWPGVISLLDDPMIELKEFSLKKLNDIVDDFWPENEK 552 (988)
Q Consensus 473 ~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~~~~~~~~g~~~~~~~~p~ai~lL~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 552 (988)
.|.+|...+..+.++.+|-.|+-+|--|+.|+.-+.-...-.-++|.-|.||..|-..-.+.-+=-|.+|+++.-.-..+
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~ 189 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDY 189 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHH
Confidence 46777777777778889999999999999999887777777789999999998654321111111166777762110000
Q ss_pred hHHHHHHHHHhhhccCCchhHHHH--HHHHH----hc--CCchHHHHHhhhhhhhhhhhhhHHHHHHHHhhcCCCchhhh
Q psy6893 553 EKQLQARITKLSKILSGEVSIDLH--LQFLI----RS--NKTDMLILKNTKESIRVSICHTATIIANAFMHSGTTSDQFL 624 (988)
Q Consensus 553 ~~~~~~~~~~l~~Il~g~~~~~l~--l~fL~----~~--n~tD~~il~~~kds~r~s~~h~A~~~ana~~naGt~~D~fl 624 (988)
--....+..|+.++.....+.++ +.+.. |+ .+..+.-+ ..+--++...=...|.-.
T Consensus 190 -vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v---------------~~iLp~L~~ll~~~D~~V 253 (514)
T KOG0166|consen 190 -VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVV---------------APILPALLRLLHSTDEEV 253 (514)
T ss_pred -HHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHH---------------HHHHHHHHHHHhcCCHHH
Confidence 00011123333333322221111 00000 00 00100000 001111111112223333
Q ss_pred cchhHHHHh-hc-cc-chhhhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchH-------
Q psy6893 625 RDNLEWLAR-AT-NW-AKLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAV------- 694 (988)
Q Consensus 625 r~~~~wl~k-~~-~w-~kfsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~------- 694 (988)
..+.-|.-. -. +| .+..++--.| ....|-+.|- ..++.+.--||-++|-|-.|....
T Consensus 254 l~Da~WAlsyLsdg~ne~iq~vi~~g---------vv~~LV~lL~----~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~ 320 (514)
T KOG0166|consen 254 LTDACWALSYLTDGSNEKIQMVIDAG---------VVPRLVDLLG----HSSPKVVTPALRAIGNIVTGSDEQTQVVINS 320 (514)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHcc---------chHHHHHHHc----CCCcccccHHHhhccceeeccHHHHHHHHhc
Confidence 333334111 11 11 1222222222 2233444553 446678889999999998887541
Q ss_pred -HHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCC-------HHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHH
Q psy6893 695 -INDYLLGQVKDATNEMVRHGGCLGLGLAAMGSAR-------DDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESA 766 (988)
Q Consensus 695 -~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~-------~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~ 766 (988)
++..|...+..+..+.++-.||.-++=+.+|+.. ..++-.|+.++...+.....-|+.|++-.-.| |+.+-
T Consensus 321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~-g~~~q 399 (514)
T KOG0166|consen 321 GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS-GTPEQ 399 (514)
T ss_pred ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc-CCHHH
Confidence 3455655665566778999999999999998763 23455666666444444444689999877666 55666
Q ss_pred HHHHHH
Q psy6893 767 IQDMVA 772 (988)
Q Consensus 767 i~~ll~ 772 (988)
+..|+.
T Consensus 400 i~yLv~ 405 (514)
T KOG0166|consen 400 IKYLVE 405 (514)
T ss_pred HHHHHH
Confidence 555544
No 41
>KOG1144|consensus
Probab=90.07 E-value=0.29 Score=60.00 Aligned_cols=7 Identities=29% Similarity=0.463 Sum_probs=2.7
Q ss_pred HHHHHHH
Q psy6893 801 ADDLVRD 807 (988)
Q Consensus 801 a~~li~~ 807 (988)
.+.++..
T Consensus 112 ~dkllas 118 (1064)
T KOG1144|consen 112 LDKLLAS 118 (1064)
T ss_pred hHHHhhh
Confidence 3344333
No 42
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=89.98 E-value=30 Score=39.41 Aligned_cols=191 Identities=14% Similarity=0.056 Sum_probs=92.4
Q ss_pred cccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCc--hHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCC
Q psy6893 649 IHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHG--AVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGS 726 (988)
Q Consensus 649 Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~--~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs 726 (988)
...|+.++++..++..+... ...+..+.-++..+|.+....+ ..+..++...+...+ ....+...++.++...
T Consensus 80 ~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~la~~~~~~ 154 (389)
T PRK11788 80 RRRGEVDRAIRIHQNLLSRP--DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD---FAEGALQQLLEIYQQE 154 (389)
T ss_pred HHcCcHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc---chHHHHHHHHHHHHHh
Confidence 35677888888877766411 1112223345555666555443 335544444332221 2234455555565555
Q ss_pred CCHH-HHHHHHHhhccCChhh-HH--HHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHH
Q psy6893 727 ARDD-IYEQLKFNLYQDDAVT-GE--AAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENAD 802 (988)
Q Consensus 727 ~~~d-v~~~L~~~l~~D~~~~-~e--~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~ 802 (988)
++.+ ..+.+...+..++... .. ..-..+|.+....++.+-...++.-+.+...+.......++..+...|+.+.+.
T Consensus 155 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 234 (389)
T PRK11788 155 KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAI 234 (389)
T ss_pred chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHH
Confidence 5533 3333333332221111 11 122355666666666554333333222222222223344555556677777777
Q ss_pred HHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHH
Q psy6893 803 DLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAI 845 (988)
Q Consensus 803 ~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~ 845 (988)
.+++.+.... |.........++.+|+..|++....+.+..+.
T Consensus 235 ~~~~~~~~~~-p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 235 EALERVEEQD-PEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777665432 22112223455667777788777666666554
No 43
>PTZ00121 MAEBL; Provisional
Probab=89.31 E-value=1 Score=58.57 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHhhccCCChhHHH
Q psy6893 351 VTGEAAGIAMGLVLLGSKSESAIQ 374 (988)
Q Consensus 351 ~~~~aA~lglGL~~~Gs~~~~~~~ 374 (988)
+.-.-.|+||=--|.-+|.-+.-.
T Consensus 715 ip~~kSG~AM~~G~l~~CP~~~n~ 738 (2084)
T PTZ00121 715 IPYDKSGIAMHHGFLASCPIDENE 738 (2084)
T ss_pred ecccchhhHHhcCCcccCCCcccH
Confidence 444455667755566666655443
No 44
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=88.47 E-value=8.3 Score=43.91 Aligned_cols=31 Identities=29% Similarity=0.229 Sum_probs=25.3
Q ss_pred hHHHHHhhhhhccCCChhhhhhHHhhhhhhhh
Q psy6893 864 NVATKRLLHVAVSDVNDDVRREAVTALGFILF 895 (988)
Q Consensus 864 ~~air~ll~~~~sd~~~~vrraa~~alg~i~~ 895 (988)
+.++.+|..++.++ +.+||.+|-.+++++.=
T Consensus 227 ~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 227 EEALPALSELLDSD-DVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 55677788888775 88999999999998854
No 45
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=88.29 E-value=81 Score=39.68 Aligned_cols=187 Identities=14% Similarity=0.060 Sum_probs=78.4
Q ss_pred cccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCC
Q psy6893 649 IHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSAR 728 (988)
Q Consensus 649 Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~ 728 (988)
...|+.++++..++..+... ..+....-.+++..+...|...+++..+...+...++. ..+...||.++.-.++
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~---~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~---~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFF---ALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG---AALRRSLGLAYYQSGR 261 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcC---CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCC
Confidence 45567777777766665421 00111111222333344455455555544444332221 1222334444443333
Q ss_pred HH-----HHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHH
Q psy6893 729 DD-----IYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADD 803 (988)
Q Consensus 729 ~d-----v~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~ 803 (988)
.+ ....+...+..++... .+-..+|.+....++.+-....++-+.....+...-...++..+...|+.+++..
T Consensus 262 ~~eA~~~A~~~~~~Al~l~P~~~--~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 262 SREAKLQAAEHWRHALQFNSDNV--RIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred chhhHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 22 3444444443333221 2333445555555554443333333322222211112234444556677766666
Q ss_pred HHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHH
Q psy6893 804 LVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAI 845 (988)
Q Consensus 804 li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~ 845 (988)
.++.+... +|... ...+..+.+|...|+.......+..+.
T Consensus 340 ~l~~al~~-~P~~~-~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 340 EFVQLARE-KGVTS-KWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHh-Cccch-HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66555432 12110 111223444555566655555555443
No 46
>KOG1824|consensus
Probab=88.20 E-value=4 Score=51.72 Aligned_cols=239 Identities=17% Similarity=0.174 Sum_probs=143.1
Q ss_pred HHHhhccchhhHHhhhccceec-CChHHHHHHHhcccCCCCCCCCCccchhHHHHHhhhccCCCCchhHHHHHHhhhhcC
Q psy6893 268 WLARATNWAKLTATASLGVIHR-GHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATN 346 (988)
Q Consensus 268 Wl~k~~~~~~~sAtASLG~Ih~-~~~~~gl~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~~~~~d~l~~lL~~~~~ 346 (988)
-+.|.-.++.-.-+|.|-.+-. -+-.-+-+++..++.+ .++.-++-=|++.+|-+.-+....-...+...+-+.++
T Consensus 791 ~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~---~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~ 867 (1233)
T KOG1824|consen 791 GLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSP---KSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFN 867 (1233)
T ss_pred chhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCC---CCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcC
Confidence 4666666666666676666655 1111223444444432 25667888999999999887764444445556777788
Q ss_pred CCchhHHHHHHHHHHHhhccCCChhHHHHHHHhhh-hcc------h---HHHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q psy6893 347 EDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAK-ETQ------H---EKILRGLAVGISFIMYGQLENADDLVRDLCE 416 (988)
Q Consensus 347 ~d~~~~~~aA~lglGL~~~Gs~~~~~~~~L~~~~~-dt~------~---E~~~r~lalgl~~v~~g~~e~a~~li~~L~~ 416 (988)
+.+.-+..||++|||-+-+|+-+. -+..++..+. +.. | |.|.++ +.. +-.+.++.|...|+.
T Consensus 868 sp~edvksAAs~ALGsl~vgnl~~-yLpfil~qi~sqpk~QyLLLhSlkevi~~~-svd------~~~~~v~~IW~lL~k 939 (1233)
T KOG1824|consen 868 SPSEDVKSAASYALGSLAVGNLPK-YLPFILEQIESQPKRQYLLLHSLKEVIVSA-SVD------GLKPYVEKIWALLFK 939 (1233)
T ss_pred CChHHHHHHHHHHhhhhhcCchHh-HHHHHHHHHhcchHhHHHHHHHHHHHHHHh-ccc------hhhhhHHHHHHHHHH
Confidence 889999999999999888887643 2333333222 211 1 222221 111 345678888888887
Q ss_pred cchhhhhccchhHHHHHhhhhhhhccccchh--hHHh-h--ccch--hHHHHHhhhccCCCHHHHHHHHH-------Hhc
Q psy6893 417 EKDAILRRSGMYTIAMAYCVSYLYFDLFSDL--TYRI-V--KNRS--GMYTIAMAYCGSGSNVATKRLLH-------VAV 482 (988)
Q Consensus 417 ~~d~~lr~~~~~~~~l~l~Lgll~~g~~~e~--~l~~-~--~~~~--~~~~~~~AYaGTGN~~~Iq~LLh-------i~~ 482 (988)
+-+-.- .|. .-.+|.|||.+-+=..... -++. + +.|. ...+.+.=|-=|-....|..+|. .+.
T Consensus 940 ~cE~~e-egt--R~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~ 1016 (1233)
T KOG1824|consen 940 HCECAE-EGT--RNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLL 1016 (1233)
T ss_pred hcccch-hhh--HHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHH
Confidence 653321 221 3468999999876554111 1111 1 1121 12255556666666666666665 345
Q ss_pred cCCCchhhHHHHHHHHHHhhcCccccccccCCCCchhHHhhcc
Q psy6893 483 SDVNDDVRREAVTALGFILFRTLFYVAPACTRSPWPGVISLLD 525 (988)
Q Consensus 483 s~~~~dvrr~AV~~lg~I~~~~~~~~g~~~~~~~~p~ai~lL~ 525 (988)
.|++-.|||.|+..+--.+-+.| +|+|.-.|+.+-+|-
T Consensus 1017 ~dpDl~VrrvaLvv~nSaahNKp-----slIrDllpeLLp~Ly 1054 (1233)
T KOG1824|consen 1017 RDPDLEVRRVALVVLNSAAHNKP-----SLIRDLLPELLPLLY 1054 (1233)
T ss_pred hCCchhHHHHHHHHHHHHHccCH-----hHHHHHHHHHHHHHH
Confidence 67777899999887776665444 777777777666554
No 47
>KOG1943|consensus
Probab=87.40 E-value=1.1e+02 Score=40.18 Aligned_cols=155 Identities=14% Similarity=0.105 Sum_probs=82.8
Q ss_pred hhhhhhhhcccccCChHHHH-HHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch-H---------HHHHHHHHhh---
Q psy6893 639 KLTATASLGVIHRGHETEAL-AHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA-V---------INDYLLGQVK--- 704 (988)
Q Consensus 639 kfsA~ASLG~Ih~gn~~~~l-~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~-~---------~~~~Ll~~l~--- 704 (988)
++.++.+|-.++.|.++.-. -.+-|+|.+ +-+.+...+-|..+|.|-|-.+... + .+.-+.+.+.
T Consensus 561 relaa~aL~~Ls~~~pk~~a~~~L~~lld~-~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~ 639 (1133)
T KOG1943|consen 561 RELAAYALHKLSLTEPKYLADYVLPPLLDS-TLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPIC 639 (1133)
T ss_pred HHHHHHHHHHHHHhhHHhhcccchhhhhhh-hcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHH
Confidence 36888888888888776443 224444432 2356777888888888876444321 0 1111211110
Q ss_pred ----hc-CchhhHHHHHHhhHhhhcCCCC---HHHHHHHHHhhc-cC--Ch-----hhHHHHHHHhhcccCCCCCHH-HH
Q psy6893 705 ----DA-TNEMVRHGGCLGLGLAAMGSAR---DDIYEQLKFNLY-QD--DA-----VTGEAAGIAMGLVLLGSKSES-AI 767 (988)
Q Consensus 705 ----~s-~~~~ir~gA~LGLGla~~Gs~~---~dv~~~L~~~l~-~D--~~-----~~~e~AalAlGLI~vGs~n~d-~i 767 (988)
.- ...++|-+.+-++-......-+ +-+.+....++- .+ .. ..-..+.+..-.++...++.+ ++
T Consensus 640 ~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n~i~~~av~av~~l~s~y~~~d~~~~~~li 719 (1133)
T KOG1943|consen 640 DRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPNQIRDAAVSAVSDLVSTYVKADEGEEAPLI 719 (1133)
T ss_pred HHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcCchhhhHHH
Confidence 00 1134554444444443333322 234443333332 12 11 111234455566666666666 66
Q ss_pred HHHHHHHHhcccchhhhHHHHHHHHHh
Q psy6893 768 QDMVAYAKETQHEKILRGLAVGISFIM 794 (988)
Q Consensus 768 ~~ll~~~~etq~e~i~R~lalgLgLi~ 794 (988)
..++..+.+...+.+.|++.+.+|.+-
T Consensus 720 ~~~ls~~~~~~~~~~r~g~~lal~~lp 746 (1133)
T KOG1943|consen 720 TRYLSRLTKCSEERIRRGLILALGVLP 746 (1133)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHccCc
Confidence 777777766667889999988887654
No 48
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=87.32 E-value=8.6 Score=43.92 Aligned_cols=208 Identities=16% Similarity=0.176 Sum_probs=132.0
Q ss_pred HHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHH-------HHHHHHHhhccCChhhHHHHHHHhhcccCCCCC-----
Q psy6893 696 NDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDD-------IYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKS----- 763 (988)
Q Consensus 696 ~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~d-------v~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n----- 763 (988)
...+.+.+.+......+..|.-.|-=++.||.+.. +.-.++.+|++.+....|.|--|+|-|-=.|..
T Consensus 116 VpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~v 195 (526)
T COG5064 116 VPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYV 195 (526)
T ss_pred cHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHH
Confidence 44456666677778899999999988888887654 345677777655555678899999998322211
Q ss_pred --HHHHHHHHHHHHhcc-cchhhhHHHHHHHHHhcCCc--------hhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCC
Q psy6893 764 --ESAIQDMVAYAKETQ-HEKILRGLAVGISFIMYGQL--------ENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSG 832 (988)
Q Consensus 764 --~d~i~~ll~~~~etq-~e~i~R~lalgLgLi~~Gr~--------e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtG 832 (988)
..+++.++.++.+.. |-.+.|...--|.=+.-|+. ..+-+++..|..+.||-.-.-++++ +.|+.-|
T Consensus 196 L~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WA--iSYlsDg 273 (526)
T COG5064 196 LQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWA--ISYLSDG 273 (526)
T ss_pred HhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHH--HHHhccC
Confidence 113455566555433 45566766666655665654 2355666777777777665655554 5699988
Q ss_pred ChhHHHHHHHHHHHhh------------hhhhhhhhhccCCCchH---------HHHHhhhhhccCCChhhhhhHHhhhh
Q psy6893 833 SNVATKRLLHDAILRR------------SGMYTIAMAYCGSGSNV---------ATKRLLHVAVSDVNDDVRREAVTALG 891 (988)
Q Consensus 833 nvl~iq~lL~~~~~~~------------lG~alia~g~~~tgn~~---------air~ll~~~~sd~~~~vrraa~~alg 891 (988)
-..++|-.+.--...| .-=++=+.|-+=||+.. ++..|..+ .|.|-+.+|..+.+.++
T Consensus 274 ~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~l-Ls~~ke~irKEaCWTiS 352 (526)
T COG5064 274 PNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSL-LSSPKENIRKEACWTIS 352 (526)
T ss_pred cHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHH-hcChhhhhhhhhheeec
Confidence 8888887765433221 11122233333344432 23334334 45578899999999999
Q ss_pred hhhhhhhhhhHhhhh
Q psy6893 892 FILFRKKRTRRKKKK 906 (988)
Q Consensus 892 ~i~~~npeq~pk~~k 906 (988)
=|...|.+++..+.+
T Consensus 353 NITAGnteqiqavid 367 (526)
T COG5064 353 NITAGNTEQIQAVID 367 (526)
T ss_pred ccccCCHHHHHHHHh
Confidence 999999988766543
No 49
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=87.01 E-value=1.1 Score=51.06 Aligned_cols=7 Identities=29% Similarity=0.477 Sum_probs=2.8
Q ss_pred HhhcCCC
Q psy6893 613 FMHSGTT 619 (988)
Q Consensus 613 ~~naGt~ 619 (988)
|-..|++
T Consensus 47 Fa~VG~~ 53 (321)
T PF07946_consen 47 FALVGDD 53 (321)
T ss_pred ccccCCC
Confidence 3334443
No 50
>KOG0567|consensus
Probab=86.90 E-value=22 Score=39.54 Aligned_cols=190 Identities=19% Similarity=0.190 Sum_probs=108.0
Q ss_pred HHHHHHHHHhhhc-CchhhHHHHHHhhHhhhcCCCCHHHHHHHHHhhccCChhh-HHHHHHHhhcc-------------c
Q psy6893 694 VINDYLLGQVKDA-TNEMVRHGGCLGLGLAAMGSARDDIYEQLKFNLYQDDAVT-GEAAGIAMGLV-------------L 758 (988)
Q Consensus 694 ~~~~~Ll~~l~~s-~~~~ir~gA~LGLGla~~Gs~~~dv~~~L~~~l~~D~~~~-~e~AalAlGLI-------------~ 758 (988)
+++..|.+.+.+. ..+.+||.|...||-. | ++++.+-|.... .|+... .|.-.+|+.-| +
T Consensus 67 ~Av~~l~~vl~desq~pmvRhEAaealga~--~--~~~~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p 141 (289)
T KOG0567|consen 67 DAVPVLVEVLLDESQEPMVRHEAAEALGAI--G--DPESLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSSP 141 (289)
T ss_pred hhhHHHHHHhcccccchHHHHHHHHHHHhh--c--chhhHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccCc
Confidence 3566666655433 3467888888888863 4 666777776655 454321 12111121111 1
Q ss_pred CCCC------CHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCC
Q psy6893 759 LGSK------SESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSG 832 (988)
Q Consensus 759 vGs~------n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtG 832 (988)
.+|- |..-+..|-..+.+.....+.|..++ ..|=-.|.++++.++++.|..+ -+..|....|+.+ ...
T Consensus 142 ~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~am-F~LRn~g~EeaI~al~~~l~~~-SalfrhEvAfVfG--Ql~-- 215 (289)
T KOG0567|consen 142 YISVDPAPPANLSSVHELRAELLDETKPLFERYRAM-FYLRNIGTEEAINALIDGLADD-SALFRHEVAFVFG--QLQ-- 215 (289)
T ss_pred cccCCCCCccccccHHHHHHHHHhcchhHHHHHhhh-hHhhccCcHHHHHHHHHhcccc-hHHHHHHHHHHHh--hcc--
Confidence 1111 21123444444444444555566333 2356678899999999999877 5666777666653 222
Q ss_pred ChhHHHHH---HHHHHH--hhhhhhhhhhhccCCCchHHHHHhhhhhccCCChhhhhhHHhhhhhhhhhh
Q psy6893 833 SNVATKRL---LHDAIL--RRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRK 897 (988)
Q Consensus 833 nvl~iq~l---L~~~~~--~~lG~alia~g~~~tgn~~air~ll~~~~sd~~~~vrraa~~alg~i~~~n 897 (988)
.+-.|+.+ |.++.+ .+.=.|+-++|-+ |++.++.-|-.+ ..|+++-||..+..++....+.|
T Consensus 216 s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaI--a~e~~~~vL~e~-~~D~~~vv~esc~valdm~eyen 282 (289)
T KOG0567|consen 216 SPAAIPSLIKVLLDETEHPMVRHEAAEALGAI--ADEDCVEVLKEY-LGDEERVVRESCEVALDMLEYEN 282 (289)
T ss_pred chhhhHHHHHHHHhhhcchHHHHHHHHHHHhh--cCHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHhc
Confidence 12223333 333332 5666677778874 888888877666 46667777777777776666544
No 51
>KOG0163|consensus
Probab=86.74 E-value=1.9 Score=52.96 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=22.9
Q ss_pred hccCCcccccccchhH-----------HHhhccchhhHHhhhccceecCChH
Q psy6893 253 HSGTTSDQFLRDNLEW-----------LARATNWAKLTATASLGVIHRGHET 293 (988)
Q Consensus 253 naG~~~D~fl~~n~~W-----------l~k~~~~~~~sAtASLG~Ih~~~~~ 293 (988)
.+|+.+|.++.+..++ +...-....||.+| |++|+||++
T Consensus 302 ~~~~~kD~iidD~~dF~rl~~Al~~~Glsd~Ekl~i~s~vA--~vLHLGNie 351 (1259)
T KOG0163|consen 302 QKGSLKDPIIDDYQDFHRLEKALKLLGLSDTEKLFIWSTVA--AVLHLGNIE 351 (1259)
T ss_pred ccCcccCcccccHHHHHHHHHHHHhcCCChHHHHHHHHHHH--HHHHccccc
Confidence 4577788887765432 12222344556665 467888775
No 52
>KOG2171|consensus
Probab=86.15 E-value=4.1 Score=52.61 Aligned_cols=63 Identities=22% Similarity=0.153 Sum_probs=49.2
Q ss_pred HHHHHhcccCCCCCCCCCccchhHHHHHhhhccCCCCc---hhHHHHHHhhhhcCCCchhHHHHHHHHHH
Q psy6893 295 ALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAV---INDYLLGQVKDATNEDDAVTGEAAGIAMG 361 (988)
Q Consensus 295 gl~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~~~---~~d~l~~lL~~~~~~d~~~~~~aA~lglG 361 (988)
.++.+..+|.| .+.+-+=-||+||+.|.-|-.+. ..+.++..+-..++...+.+|-||..++|
T Consensus 349 ~~~~l~~~l~S----~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naig 414 (1075)
T KOG2171|consen 349 LFEALEAMLQS----TEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIG 414 (1075)
T ss_pred HHHHHHHHhcC----CCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 45666777776 58899999999999999887642 44556666666666678999999999998
No 53
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=85.33 E-value=38 Score=39.01 Aligned_cols=72 Identities=22% Similarity=0.148 Sum_probs=42.5
Q ss_pred HHHHHHHhccCCCchhhHHHHHHHHHHhhcCccccccccCCCCchhHHhhccchhhhhhHhhHHHhhhhccc
Q psy6893 474 TKRLLHVAVSDVNDDVRREAVTALGFILFRTLFYVAPACTRSPWPGVISLLDDPMIELKEFSLKKLNDIVDD 545 (988)
Q Consensus 474 Iq~LLhi~~s~~~~dvrr~AV~~lg~I~~~~~~~~g~~~~~~~~p~ai~lL~~~~~~~~~~~~~~l~~~~~~ 545 (988)
|-++..+.-++..+=.+-.|.-+|--|+.|..-|--+..-..+||.-|.||+.+-..-.+..+=-|-+|++|
T Consensus 116 VpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGD 187 (526)
T COG5064 116 VPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGD 187 (526)
T ss_pred cHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCC
Confidence 344555444444444456788888888888765544444457999999999854322111111126677765
No 54
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=84.84 E-value=1.6e+02 Score=39.66 Aligned_cols=458 Identities=12% Similarity=0.006 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhccCCChhHHHHHHHhhhhcchHHHHHHHHHHHHHHhcCChhhHHHHHHHHhhcchhhhhccchhH
Q psy6893 350 AVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYT 429 (988)
Q Consensus 350 ~~~~~aA~lglGL~~~Gs~~~~~~~~L~~~~~dt~~E~~~r~lalgl~~v~~g~~e~a~~li~~L~~~~d~~lr~~~~~~ 429 (988)
++.....-+..+-....+++.|.....+.-+..-+....-.....+...+..|+.+.|...++.+.+........ .-.
T Consensus 24 ~~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~--~~~ 101 (1157)
T PRK11447 24 APTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAY--RSS 101 (1157)
T ss_pred cCCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHH--HHH
Q ss_pred HHH----------Hhhhhhhhcccc-chhhHHh----hccchhHHHHHhhhccC-----CCHHHHHHHHHHhccCCCchh
Q psy6893 430 IAM----------AYCVSYLYFDLF-SDLTYRI----VKNRSGMYTIAMAYCGS-----GSNVATKRLLHVAVSDVNDDV 489 (988)
Q Consensus 430 ~~l----------~l~Lgll~~g~~-~e~~l~~----~~~~~~~~~~~~AYaGT-----GN~~~Iq~LLhi~~s~~~~dv 489 (988)
... .+.+|.++...+ .+..++. ++..-.....++.|.++ |+...-.+.|.-+.....++.
T Consensus 102 ~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~ 181 (1157)
T PRK11447 102 RTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNT 181 (1157)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCH
Q ss_pred hHHHHHHHHHHhhcCccccccccCCCCchhHHhhccchhhhhhHhhHHHhhhhcccCCCCchhhHHHHHHHHHhhhccCC
Q psy6893 490 RREAVTALGFILFRTLFYVAPACTRSPWPGVISLLDDPMIELKEFSLKKLNDIVDDFWPENEKEKQLQARITKLSKILSG 569 (988)
Q Consensus 490 rr~AV~~lg~I~~~~~~~~g~~~~~~~~p~ai~lL~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~Il~g 569 (988)
+..-.++.-+...++. ..|+..|.+........... ...-.+++...-..
T Consensus 182 ~~~~~LA~ll~~~g~~------------~eAl~~l~~~~~~~~~~~~a------------------a~~~~~~l~~~~~~ 231 (1157)
T PRK11447 182 GLRNTLALLLFSSGRR------------DEGFAVLEQMAKSPAGRDAA------------------AQLWYGQIKDMPVS 231 (1157)
T ss_pred HHHHHHHHHHHccCCH------------HHHHHHHHHHhhCCCchHHH------------------HHHHHHHHhccCCC
Q ss_pred chhHHHHHHHHHhcCCchHHHHHhhhhhhhhhhhhhHHHHHHHHhhcCCCchhhhcchhHHHHhhcccchhhhhhhhccc
Q psy6893 570 EVSIDLHLQFLIRSNKTDMLILKNTKESIRVSICHTATIIANAFMHSGTTSDQFLRDNLEWLARATNWAKLTATASLGVI 649 (988)
Q Consensus 570 ~~~~~l~l~fL~~~n~tD~~il~~~kds~r~s~~h~A~~~ana~~naGt~~D~flr~~~~wl~k~~~w~kfsA~ASLG~I 649 (988)
......+..|+.+....+.. +........=.....+..-..-.-.+-.+
T Consensus 232 ~~~~~~l~~~l~~~p~~~~~-------------------------------~~A~~~L~~~~~~~~dp~~~~~~~G~~~~ 280 (1157)
T PRK11447 232 DASVAALQKYLQVFSDGDSV-------------------------------AAARSQLAEQQKQLADPAFRARAQGLAAV 280 (1157)
T ss_pred hhhHHHHHHHHHHCCCchHH-------------------------------HHHHHHHHHHHHhccCcchHHHHHHHHHH
Q ss_pred ccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcCchhh-----------HHHHHHh
Q psy6893 650 HRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEMV-----------RHGGCLG 718 (988)
Q Consensus 650 h~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~~~~i-----------r~gA~LG 718 (988)
..|+.++|+..++..+. ....+...=..+|.-....|...+++.++..-+...++... ++-..+.
T Consensus 281 ~~g~~~~A~~~l~~aL~----~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVR----ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Q ss_pred hHhhhcCCCC-HHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCC
Q psy6893 719 LGLAAMGSAR-DDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQ 797 (988)
Q Consensus 719 LGla~~Gs~~-~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr 797 (988)
+|-+++..++ ++....+...+..++... .+-+.+|.+....++.+-.....+-+.....+...-...++. +...++
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~~--~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~-l~~~~~ 433 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNTDS--YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN-LYRQQS 433 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHhcC
Q ss_pred chhHHHHHHHHhccc-------chhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHH---------hhhhhhhhhhhccCC
Q psy6893 798 LENADDLVRDLCEEK-------DAILRRSGMYTIAMAYCGSGSNVATKRLLHDAIL---------RRSGMYTIAMAYCGS 861 (988)
Q Consensus 798 ~e~a~~li~~L~~~~-------dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~---------~~lG~alia~g~~~t 861 (988)
.+++...++.+.... ............+..|...|+.....+.+..... ..+|.++...|+.
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~-- 511 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQR-- 511 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--
Q ss_pred CchHHHHHhhhhhccCCChh
Q psy6893 862 GSNVATKRLLHVAVSDVNDD 881 (988)
Q Consensus 862 gn~~air~ll~~~~sd~~~~ 881 (988)
..|+..+-.++..+|++.
T Consensus 512 --~~A~~~l~~al~~~P~~~ 529 (1157)
T PRK11447 512 --SQADALMRRLAQQKPNDP 529 (1157)
T ss_pred --HHHHHHHHHHHHcCCCCH
No 55
>PTZ00429 beta-adaptin; Provisional
Probab=84.76 E-value=1.3e+02 Score=38.60 Aligned_cols=359 Identities=14% Similarity=0.069 Sum_probs=170.6
Q ss_pred hhHHHHHHhhhhcCCCchhHHHHHHHHHHHhhccCCChhHHHHHHHhhhhcchHHHHHHHHHHHHHHhcCChhhHHHHHH
Q psy6893 333 INDYLLGQVKDATNEDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVR 412 (988)
Q Consensus 333 ~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~~~Gs~~~~~~~~L~~~~~dt~~E~~~r~lalgl~~v~~g~~e~a~~li~ 412 (988)
+...+...|... +...-..+.---+.+...|-.-....-+.+..+..+ .-.+.|-+-+.+..++..++|.+--.+.
T Consensus 33 e~~ELr~~L~s~---~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~~pelalLaIN 108 (746)
T PTZ00429 33 EGAELQNDLNGT---DSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPST-DLELKKLVYLYVLSTARLQPEKALLAVN 108 (746)
T ss_pred hHHHHHHHHHCC---CHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccChHHHHHHHH
Confidence 555566666432 222333333333444455632222333334433333 3336666666666677777887777777
Q ss_pred HHhhc---chhhhhccchhHHHHHhhhhhhhccccchhhHHhhccchhHHHHHhhhccCCCH-HHHHHHHHHhccCCCch
Q psy6893 413 DLCEE---KDAILRRSGMYTIAMAYCVSYLYFDLFSDLTYRIVKNRSGMYTIAMAYCGSGSN-VATKRLLHVAVSDVNDD 488 (988)
Q Consensus 413 ~L~~~---~d~~lr~~~~~~~~l~l~Lgll~~g~~~e~~l~~~~~~~~~~~~~~AYaGTGN~-~~Iq~LLhi~~s~~~~d 488 (988)
.|..+ ++|.+|. +|+ -.|+.+..-+. ..+-.-+.-|.+|.++-
T Consensus 109 tl~KDl~d~Np~IRa-------LAL--------------------------RtLs~Ir~~~i~e~l~~~lkk~L~D~~pY 155 (746)
T PTZ00429 109 TFLQDTTNSSPVVRA-------LAV--------------------------RTMMCIRVSSVLEYTLEPLRRAVADPDPY 155 (746)
T ss_pred HHHHHcCCCCHHHHH-------HHH--------------------------HHHHcCCcHHHHHHHHHHHHHHhcCCCHH
Confidence 77654 3444443 322 22233322221 11222244466788899
Q ss_pred hhHHHHHHHHHHhhcCccccccccCCCCchhHHhhccchhhhhhHhhHHHhhhhcccCCCCchhhHHHHHHHHHhhhccC
Q psy6893 489 VRREAVTALGFILFRTLFYVAPACTRSPWPGVISLLDDPMIELKEFSLKKLNDIVDDFWPENEKEKQLQARITKLSKILS 568 (988)
Q Consensus 489 vrr~AV~~lg~I~~~~~~~~g~~~~~~~~p~ai~lL~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~Il~ 568 (988)
||+.|++++.-|.-.+|-.. ....=.+....+|.+.-..-...-+.-|..+..+ .+.. . .-....+.++...+.
T Consensus 156 VRKtAalai~Kly~~~pelv---~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~-~~~~-l-~l~~~~~~~Ll~~L~ 229 (746)
T PTZ00429 156 VRKTAAMGLGKLFHDDMQLF---YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY-GSEK-I-ESSNEWVNRLVYHLP 229 (746)
T ss_pred HHHHHHHHHHHHHhhCcccc---cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh-Cchh-h-HHHHHHHHHHHHHhh
Confidence 99999999999975544100 0111234455555441111111111123333221 1110 1 112233455555554
Q ss_pred --CchhHHHHHHHHHhcCCchH----HHHHhhhhhhhhhhhhhHH--HHHHHHhhcCCCc-hhhhcchhH-------HHH
Q psy6893 569 --GEVSIDLHLQFLIRSNKTDM----LILKNTKESIRVSICHTAT--IIANAFMHSGTTS-DQFLRDNLE-------WLA 632 (988)
Q Consensus 569 --g~~~~~l~l~fL~~~n~tD~----~il~~~kds~r~s~~h~A~--~~ana~~naGt~~-D~flr~~~~-------wl~ 632 (988)
++-..-.-+++|.+.++.|- .||+.+..-.+++ ..|+ ..++.|++..... +.+++.-.. -+.
T Consensus 230 e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~--N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ 307 (746)
T PTZ00429 230 ECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQ--NPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS 307 (746)
T ss_pred cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh
Confidence 24334455666666554432 3444444322221 1133 3356677666542 233332111 122
Q ss_pred hhcccchhhhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhh-ccCCchHHHHHHHHHhhhcCchhh
Q psy6893 633 RATNWAKLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLI-HANHGAVINDYLLGQVKDATNEMV 711 (988)
Q Consensus 633 k~~~w~kfsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI-~ag~~~~~~~~Ll~~l~~s~~~~i 711 (988)
....-.+|.+--.+-.|-..++.--...++.|+. .+++..|+|--.|--|-.+ +..+-..++.-|.+... ..+..+
T Consensus 308 ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~--~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~-d~D~ef 384 (746)
T PTZ00429 308 RRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYV--RYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYAS-GVDMVF 384 (746)
T ss_pred CCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhc--ccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhh-cCCHHH
Confidence 2233567777777777766555422223333332 1355567776666555444 11222234544544332 345578
Q ss_pred HHHHHHhhHhhhcCC--CCHHHHHHHHHhh
Q psy6893 712 RHGGCLGLGLAAMGS--ARDDIYEQLKFNL 739 (988)
Q Consensus 712 r~gA~LGLGla~~Gs--~~~dv~~~L~~~l 739 (988)
+.-++-.+|.++.-- .-+.+.+.|+.++
T Consensus 385 ~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll 414 (746)
T PTZ00429 385 VVEVVRAIASLAIKVDSVAPDCANLLLQIV 414 (746)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHh
Confidence 888899988876532 2234455666655
No 56
>PF08208 RNA_polI_A34: DNA-directed RNA polymerase I subunit RPA34.5; InterPro: IPR013240 This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription [].; PDB: 3NFG_N.
Probab=84.38 E-value=0.3 Score=51.73 Aligned_cols=9 Identities=33% Similarity=0.722 Sum_probs=2.9
Q ss_pred HHHHhhhhh
Q psy6893 866 ATKRLLHVA 874 (988)
Q Consensus 866 air~ll~~~ 874 (988)
.+.+++|+.
T Consensus 78 ~~~~~~~I~ 86 (198)
T PF08208_consen 78 PFDRFLHIS 86 (198)
T ss_dssp --SEEEEEE
T ss_pred CcceEEEEE
Confidence 344444443
No 57
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=84.02 E-value=80 Score=39.05 Aligned_cols=96 Identities=18% Similarity=0.270 Sum_probs=53.3
Q ss_pred cchhhhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcC-chhhHHHH
Q psy6893 637 WAKLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDAT-NEMVRHGG 715 (988)
Q Consensus 637 w~kfsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~-~~~ir~gA 715 (988)
+.+..+.-+||-+. ++ ..+..|.+|+.... ..+.++|--|++||.-+...+...+...|+..+.+.. +..+|+.|
T Consensus 505 ~~~~~~LkaLgN~g--~~-~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA 580 (618)
T PF01347_consen 505 EEKIVYLKALGNLG--HP-ESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAA 580 (618)
T ss_dssp HHHHHHHHHHHHHT---G-GGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHH
T ss_pred HHHHHHHHHhhccC--Cc-hhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHH
Confidence 56666666777553 33 47777778876321 3355777777777775544444455666666555543 34677777
Q ss_pred HHhhHhhhcCC-CCHHHHHHHHHhhc
Q psy6893 716 CLGLGLAAMGS-ARDDIYEQLKFNLY 740 (988)
Q Consensus 716 ~LGLGla~~Gs-~~~dv~~~L~~~l~ 740 (988)
.+.| |-+ -...++..+...+.
T Consensus 581 ~~~l----m~~~P~~~~l~~i~~~l~ 602 (618)
T PF01347_consen 581 YLIL----MRCNPSPSVLQRIAQSLW 602 (618)
T ss_dssp HHHH----HHT---HHHHHHHHHHHT
T ss_pred HHHH----HhcCCCHHHHHHHHHHHh
Confidence 7655 223 34555566655553
No 58
>KOG3809|consensus
Probab=83.72 E-value=0.47 Score=54.78 Aligned_cols=6 Identities=0% Similarity=-0.036 Sum_probs=2.3
Q ss_pred hhhhHH
Q psy6893 882 VRREAV 887 (988)
Q Consensus 882 vrraa~ 887 (988)
+-|.|.
T Consensus 124 iVdqV~ 129 (583)
T KOG3809|consen 124 IVDQVG 129 (583)
T ss_pred HHHHhh
Confidence 333343
No 59
>KOG1029|consensus
Probab=82.97 E-value=4.5 Score=50.10 Aligned_cols=10 Identities=50% Similarity=0.537 Sum_probs=4.4
Q ss_pred HHHHHHHHcC
Q psy6893 821 MYTIAMAYCG 830 (988)
Q Consensus 821 ~~~lslAyaG 830 (988)
|+.+-||..|
T Consensus 255 m~liema~sG 264 (1118)
T KOG1029|consen 255 MHLIEMAKSG 264 (1118)
T ss_pred HHHHHHHhcC
Confidence 3444444444
No 60
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=82.41 E-value=12 Score=45.82 Aligned_cols=148 Identities=18% Similarity=0.241 Sum_probs=91.5
Q ss_pred ccchhhHHHHHhhhccCCch-----H---HHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHHHHHHHHHhhccCChh
Q psy6893 674 GYYEGGGLYALGLIHANHGA-----V---INDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDDIYEQLKFNLYQDDAV 745 (988)
Q Consensus 674 ~~~k~GAL~AlGlI~ag~~~-----~---~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~dv~~~L~~~l~~D~~~ 745 (988)
.-+....+--+|+|..+... + +-.-|++.|+. .+..+|..|.-.+|.+.=.-+-.|+++.|+.-|...+..
T Consensus 702 ~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks-~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq 780 (975)
T COG5181 702 QKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKS-WNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQ 780 (975)
T ss_pred HHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHH-hhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHH
Confidence 44556666678888766542 2 44556666644 467899999999999865556788999998888533222
Q ss_pred hHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHh--cCCch-----hHHHHHHHHhcccchhhhh
Q psy6893 746 TGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIM--YGQLE-----NADDLVRDLCEEKDAILRR 818 (988)
Q Consensus 746 ~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~--~Gr~e-----~a~~li~~L~~~~dp~~r~ 818 (988)
-.-..++|+|.|-==-|-..++-+++. .-+|..-+...++.=+++.+| .|++. .+-++++.-.++.||.-|.
T Consensus 781 ~RvctsvaI~iVae~cgpfsVlP~lm~-dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRq 859 (975)
T COG5181 781 QRVCTSVAISIVAEYCGPFSVLPTLMS-DYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQ 859 (975)
T ss_pred hhhhhhhhhhhhHhhcCchhhHHHHHh-cccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHH
Confidence 222344555544211223445444443 123555666677766665554 34442 2677888888999999888
Q ss_pred hcHHH
Q psy6893 819 SGMYT 823 (988)
Q Consensus 819 ~~~~~ 823 (988)
.++-+
T Consensus 860 ta~nv 864 (975)
T COG5181 860 TAMNV 864 (975)
T ss_pred HHHHH
Confidence 76543
No 61
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=82.22 E-value=2.9 Score=47.74 Aligned_cols=7 Identities=29% Similarity=0.449 Sum_probs=2.6
Q ss_pred HHHhhhh
Q psy6893 867 TKRLLHV 873 (988)
Q Consensus 867 ir~ll~~ 873 (988)
+..|+.+
T Consensus 233 ~~~l~~~ 239 (321)
T PF07946_consen 233 LEPLLKL 239 (321)
T ss_pred HHHHHHH
Confidence 3333333
No 62
>KOG0112|consensus
Probab=81.10 E-value=0.83 Score=57.07 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=6.9
Q ss_pred HhhhccCCccc
Q psy6893 250 AFMHSGTTSDQ 260 (988)
Q Consensus 250 af~naG~~~D~ 260 (988)
+|+|-|+..|.
T Consensus 219 ~~r~~rs~qdl 229 (975)
T KOG0112|consen 219 AYRNSRSPQDL 229 (975)
T ss_pred hhhccCCcchh
Confidence 45677776663
No 63
>KOG0163|consensus
Probab=79.39 E-value=7.3 Score=48.21 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=8.9
Q ss_pred HHhhcCCCCCCCCCccchhhHH
Q psy6893 660 HMQSYLPRETGPTSGYYEGGGL 681 (988)
Q Consensus 660 ~L~~yL~~~~~s~~~~~k~GAL 681 (988)
+|...++++ ++++.+..+|-|
T Consensus 617 ll~sLF~S~-s~t~a~~~~gkL 637 (1259)
T KOG0163|consen 617 LLVSLFPSG-SSTSAKQTRGKL 637 (1259)
T ss_pred HHHHHccCC-CCCcccccccee
Confidence 444555533 122344444444
No 64
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=78.66 E-value=1.3e+02 Score=34.34 Aligned_cols=218 Identities=11% Similarity=-0.018 Sum_probs=113.1
Q ss_pred cccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch--HHHHHHHHHhhhcC-chhhHHHHHHhhHhhhcC
Q psy6893 649 IHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--VINDYLLGQVKDAT-NEMVRHGGCLGLGLAAMG 725 (988)
Q Consensus 649 Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--~~~~~Ll~~l~~s~-~~~ir~gA~LGLGla~~G 725 (988)
+..|+.++++..+...+..+ + ....+.+.+|.+....+. +++..+...+.... ....+.-+...||.+|..
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-----p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-----P-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-----c-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45688889999998887421 1 123466777766555543 45555433332221 122233456777888877
Q ss_pred CCCHH-HHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchh----h-hHHHHHHHHHhcCCch
Q psy6893 726 SARDD-IYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKI----L-RGLAVGISFIMYGQLE 799 (988)
Q Consensus 726 s~~~d-v~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i----~-R~lalgLgLi~~Gr~e 799 (988)
.++.+ +...+...+..+... ..+-..++.++.-.++.+-...+...+......+. . -...++..+...|+.+
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFA--EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcch--HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 76644 333444333222211 12333455555555565433333332222211111 1 1223444345567777
Q ss_pred hHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHH----------hhhhhhhhhhhccCCCchHHHHH
Q psy6893 800 NADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAIL----------RRSGMYTIAMAYCGSGSNVATKR 869 (988)
Q Consensus 800 ~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~----------~~lG~alia~g~~~tgn~~air~ 869 (988)
++...++.+....... ....+.++..|+..|+.....+++..... ..++.++...|+. ..|++.
T Consensus 198 ~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~----~~A~~~ 271 (389)
T PRK11788 198 AARALLKKALAADPQC--VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE----AEGLEF 271 (389)
T ss_pred HHHHHHHHHHhHCcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH----HHHHHH
Confidence 7777777665432211 12346678888899999888888777663 1344444444443 445555
Q ss_pred hhhhhccCCCh
Q psy6893 870 LLHVAVSDVND 880 (988)
Q Consensus 870 ll~~~~sd~~~ 880 (988)
+-.....+|+.
T Consensus 272 l~~~~~~~p~~ 282 (389)
T PRK11788 272 LRRALEEYPGA 282 (389)
T ss_pred HHHHHHhCCCc
Confidence 54444445543
No 65
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=78.40 E-value=8.2 Score=45.83 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=10.4
Q ss_pred hhcCCCCHHHHHHHHHhh
Q psy6893 722 AAMGSARDDIYEQLKFNL 739 (988)
Q Consensus 722 a~~Gs~~~dv~~~L~~~l 739 (988)
+..|+...+++...+|++
T Consensus 174 ~~~~~~~~~v~~~ilPli 191 (429)
T PRK00247 174 AYLGTTQATVLAFVLPLF 191 (429)
T ss_pred hhccCCccchHHHHHHHH
Confidence 445666666665555544
No 66
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=78.36 E-value=1.8e+02 Score=35.96 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=16.4
Q ss_pred HHHHHhcCCchHHHHHhhhhhhh
Q psy6893 577 LQFLIRSNKTDMLILKNTKESIR 599 (988)
Q Consensus 577 l~fL~~~n~tD~~il~~~kds~r 599 (988)
+-||++..++|-..+.+...-.|
T Consensus 211 lGlLyq~kr~dkma~lklv~hf~ 233 (898)
T COG5240 211 LGLLYQSKRTDKMAQLKLVEHFR 233 (898)
T ss_pred HHHHHHHhcccHHHHHHHHHHhh
Confidence 56889999988776666655443
No 67
>KOG0345|consensus
Probab=77.67 E-value=3.6 Score=48.68 Aligned_cols=8 Identities=13% Similarity=0.559 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q psy6893 731 IYEQLKFN 738 (988)
Q Consensus 731 v~~~L~~~ 738 (988)
+|..+..+
T Consensus 392 ~~~~ir~~ 399 (567)
T KOG0345|consen 392 VYQDIRSI 399 (567)
T ss_pred HHHHHHHH
Confidence 33444333
No 68
>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=75.25 E-value=0.57 Score=48.77 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhccCCCchHHHHHhhh
Q psy6893 837 TKRLLHDAILRRSGMYTIAMAYCGSGSNVATKRLLH 872 (988)
Q Consensus 837 iq~lL~~~~~~~lG~alia~g~~~tgn~~air~ll~ 872 (988)
+..-|...+..+.|..-+--+.+ +..+|.|+.
T Consensus 39 lke~lSsFLp~lpG~~~~~~~~d----~ssLrslIe 70 (178)
T PF10278_consen 39 LKESLSSFLPHLPGNIDLPGSQD----NSSLRSLIE 70 (178)
T ss_pred chhhHHHHccCCCCcccCCCCcC----cchHHHHhh
Confidence 34444444456666655444443 344555543
No 69
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=73.82 E-value=2 Score=52.55 Aligned_cols=9 Identities=44% Similarity=0.556 Sum_probs=3.3
Q ss_pred CchHHHHHh
Q psy6893 862 GSNVATKRL 870 (988)
Q Consensus 862 gn~~air~l 870 (988)
.+..||+++
T Consensus 72 ~s~~av~~~ 80 (539)
T PF10243_consen 72 SSDEAVKRV 80 (539)
T ss_dssp --SHHHHHH
T ss_pred cHHHHHHHH
Confidence 334444444
No 70
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=73.51 E-value=2.2e+02 Score=35.89 Aligned_cols=57 Identities=19% Similarity=0.026 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHH
Q psy6893 787 AVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAI 845 (988)
Q Consensus 787 algLgLi~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~ 845 (988)
.+|..+...|+.+++...++...... |..- ...+.++..|...|+.......+....
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~-~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLATH-PDLP-YVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444455555555555555444321 1111 112334455555555544444444433
No 71
>KOG4246|consensus
Probab=71.39 E-value=1.9 Score=53.42 Aligned_cols=9 Identities=22% Similarity=0.268 Sum_probs=3.5
Q ss_pred hHHHHHhhh
Q psy6893 864 NVATKRLLH 872 (988)
Q Consensus 864 ~~air~ll~ 872 (988)
.+++..|+.
T Consensus 776 ~~slSsLlD 784 (1194)
T KOG4246|consen 776 PTSLSSLLD 784 (1194)
T ss_pred chhhhHhhh
Confidence 333333333
No 72
>KOG2138|consensus
Probab=71.15 E-value=2.1 Score=52.30 Aligned_cols=21 Identities=24% Similarity=0.137 Sum_probs=11.6
Q ss_pred ccccChHHHHHHHHHHHHHHh
Q psy6893 46 SSIQSRSFRAQILRTLVRLYH 66 (988)
Q Consensus 46 ~~v~~~~fR~~vL~lL~~ly~ 66 (988)
+++.+|.=|..--..+..=|+
T Consensus 70 tF~SSRqeRa~~~kq~~eDFM 90 (883)
T KOG2138|consen 70 TFKSSRQERASSKKQLPEDFM 90 (883)
T ss_pred ccccchhhhhhhhhcChhhhc
Confidence 556666666655555444443
No 73
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=70.41 E-value=6.4 Score=29.02 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=20.7
Q ss_pred HHHHHHHhccCCCchhhHHHHHHHHHHh
Q psy6893 474 TKRLLHVAVSDVNDDVRREAVTALGFIL 501 (988)
Q Consensus 474 Iq~LLhi~~s~~~~dvrr~AV~~lg~I~ 501 (988)
+..|++.+ +|.+++||.+|+.+||-|+
T Consensus 2 lp~l~~~l-~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLL-NDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHH-T-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence 34566644 6889999999999999886
No 74
>KOG2138|consensus
Probab=69.80 E-value=3.5 Score=50.50 Aligned_cols=7 Identities=0% Similarity=-0.121 Sum_probs=3.1
Q ss_pred hhhhHhh
Q psy6893 898 KRTRRKK 904 (988)
Q Consensus 898 peq~pk~ 904 (988)
|.++|.-
T Consensus 788 p~~kpna 794 (883)
T KOG2138|consen 788 PVFKPNA 794 (883)
T ss_pred CccCCCc
Confidence 4444433
No 75
>KOG2270|consensus
Probab=69.72 E-value=1.9 Score=50.08 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=5.8
Q ss_pred HHHHHHHHhhh
Q psy6893 695 INDYLLGQVKD 705 (988)
Q Consensus 695 ~~~~Ll~~l~~ 705 (988)
++.+|.-.+.+
T Consensus 319 aldFLRmDc~N 329 (520)
T KOG2270|consen 319 ALDFLRMDCNN 329 (520)
T ss_pred HHHHHHHHHHH
Confidence 45666555433
No 76
>KOG0213|consensus
Probab=68.57 E-value=36 Score=42.67 Aligned_cols=167 Identities=19% Similarity=0.273 Sum_probs=96.3
Q ss_pred HHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q psy6893 695 INDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYA 774 (988)
Q Consensus 695 ~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~ 774 (988)
+-.-|++.|+.. +..||..|.-.+|.+.=.-+-.||+..|+.-|...+..-+-...+|++.|-=--+-..++-+|+.=
T Consensus 926 IcfeLlelLkah-kK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmne- 1003 (1172)
T KOG0213|consen 926 ICFELLELLKAH-KKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNE- 1003 (1172)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhh-
Confidence 344466666443 467999999999998755557788998888875322221112334444331111234454444331
Q ss_pred HhcccchhhhHHHHHHHHHhc--CCch-----hHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHHh
Q psy6893 775 KETQHEKILRGLAVGISFIMY--GQLE-----NADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAILR 847 (988)
Q Consensus 775 ~etq~e~i~R~lalgLgLi~~--Gr~e-----~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~~ 847 (988)
-+|-.-+..-++.=+++++|- |+.- ++-++++.-..+.|+.-|..++-++-
T Consensus 1004 YrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~---------------------- 1061 (1172)
T KOG0213|consen 1004 YRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIK---------------------- 1061 (1172)
T ss_pred ccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHH----------------------
Confidence 123345566677666666553 3331 25667777777888887776543321
Q ss_pred hhhhhhhhhhccCCCchHHHHHhhhhh---ccCCChhhhhhHHhhh
Q psy6893 848 RSGMYTIAMAYCGSGSNVATKRLLHVA---VSDVNDDVRREAVTAL 890 (988)
Q Consensus 848 ~lG~alia~g~~~tgn~~air~ll~~~---~sd~~~~vrraa~~al 890 (988)
=+++|-.|+|.+.+.-.|++++ .-+++++|-.++-.++
T Consensus 1062 -----Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~ 1102 (1172)
T KOG0213|consen 1062 -----HLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAM 1102 (1172)
T ss_pred -----HHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHH
Confidence 1234556778777777777765 5566777775554443
No 77
>KOG0567|consensus
Probab=67.16 E-value=30 Score=38.62 Aligned_cols=108 Identities=18% Similarity=0.271 Sum_probs=68.3
Q ss_pred ccchhhHHHHHhhhccCCchH-HHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHHHHHHHHHhhccCChhhHH--HH
Q psy6893 674 GYYEGGGLYALGLIHANHGAV-INDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDDIYEQLKFNLYQDDAVTGE--AA 750 (988)
Q Consensus 674 ~~~k~GAL~AlGlI~ag~~~~-~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~dv~~~L~~~l~~D~~~~~e--~A 750 (988)
.|-|--|+++|- |+|.+ ++.+|.+.+... +..+||.+..-+|-. ..+..+-.|..+|.......|. -|
T Consensus 170 l~~Ry~amF~LR----n~g~EeaI~al~~~l~~~-SalfrhEvAfVfGQl----~s~~ai~~L~k~L~d~~E~pMVRhEa 240 (289)
T KOG0567|consen 170 LFERYRAMFYLR----NIGTEEAINALIDGLADD-SALFRHEVAFVFGQL----QSPAAIPSLIKVLLDETEHPMVRHEA 240 (289)
T ss_pred HHHHHhhhhHhh----ccCcHHHHHHHHHhcccc-hHHHHHHHHHHHhhc----cchhhhHHHHHHHHhhhcchHHHHHH
Confidence 455667788776 55544 788887777554 678999999988873 3455566676766422233333 48
Q ss_pred HHHhhcccCCCCCHHHHHHHHHHHHhcccchhhh-HHHHHHHHHhcC
Q psy6893 751 GIAMGLVLLGSKSESAIQDMVAYAKETQHEKILR-GLAVGISFIMYG 796 (988)
Q Consensus 751 alAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R-~lalgLgLi~~G 796 (988)
|.|||.| | +++.++.|.+++. +.+.+.| .+.++|-+.-|-
T Consensus 241 AeALGaI--a--~e~~~~vL~e~~~--D~~~vv~esc~valdm~eye 281 (289)
T KOG0567|consen 241 AEALGAI--A--DEDCVEVLKEYLG--DEERVVRESCEVALDMLEYE 281 (289)
T ss_pred HHHHHhh--c--CHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHh
Confidence 8888886 3 7888877777763 2344443 555555444443
No 78
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=67.07 E-value=1.5e+02 Score=36.55 Aligned_cols=173 Identities=16% Similarity=0.159 Sum_probs=104.0
Q ss_pred HHHHHHhhhccCCcc-cccccchhHHHhhccchhhHHhhhccceec--CChHHHHHHHhcccCCCCCCCCCccchhHHHH
Q psy6893 245 TIIANAFMHSGTTSD-QFLRDNLEWLARATNWAKLTATASLGVIHR--GHETEALAHMQSYLPRETGPTSGYYEGGGLYA 321 (988)
Q Consensus 245 ~~~~Naf~naG~~~D-~fl~~n~~Wl~k~~~~~~~sAtASLG~Ih~--~~~~~gl~~l~~yL~s~~~~~~~y~~~GaL~a 321 (988)
..|..|+..|||..= +|+. +|+...+--+.-.+..=..+.+. --..+.++.+...+-+.......|.+-+++++
T Consensus 344 ~~~~Dal~~~GT~~a~~~i~---~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~ 420 (574)
T smart00638 344 RIFLDAVAQAGTPPALKFIK---QWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLA 420 (574)
T ss_pred HHHHHHHHhcCCHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHH
Confidence 579999999999632 2222 58888765443333222222222 12345677776666544444678999999999
Q ss_pred Hhhhcc---CCC--------CchhHHHHHHhhhhcCCCchhHHHHHHHHHHHhhccCCChhHHHHHHHhhh-hcchHH-H
Q psy6893 322 LGLIHA---NHG--------AVINDYLLGQVKDATNEDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAK-ETQHEK-I 388 (988)
Q Consensus 322 lGli~~---g~~--------~~~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~~~Gs~~~~~~~~L~~~~~-dt~~E~-~ 388 (988)
+|-+-- -.. ....+|+...|.+.....+......+.-||| .+|. ...+..|.||+. +++... +
T Consensus 421 ~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG--N~g~--~~~i~~l~~~l~~~~~~~~~i 496 (574)
T smart00638 421 YGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG--NAGH--PSSIKVLEPYLEGAEPLSTFI 496 (574)
T ss_pred HHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh--ccCC--hhHHHHHHHhcCCCCCCCHHH
Confidence 985432 111 1234566666666544344445567777887 5554 678889999987 444333 4
Q ss_pred HHHHHHHHHHHh-cCChhhHHHHHHHHhhcc-hhhhhc
Q psy6893 389 LRGLAVGISFIM-YGQLENADDLVRDLCEEK-DAILRR 424 (988)
Q Consensus 389 ~r~lalgl~~v~-~g~~e~a~~li~~L~~~~-d~~lr~ 424 (988)
+.+...+|-.+. .+....-+.+++.+++.. ++.+|-
T Consensus 497 R~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 497 RLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHH
Confidence 444444555444 466677777888887754 556666
No 79
>PRK12370 invasion protein regulator; Provisional
Probab=66.90 E-value=1.6e+02 Score=36.22 Aligned_cols=170 Identities=12% Similarity=0.022 Sum_probs=84.2
Q ss_pred CChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhcc--CCchHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCC-
Q psy6893 652 GHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHA--NHGAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSAR- 728 (988)
Q Consensus 652 gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~a--g~~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~- 728 (988)
++.++|+..++.-+.-+ ..+ .-+...+|.+.. |...+++..+..-+.-.++... +...+|.++.-.++
T Consensus 318 ~~~~~A~~~~~~Al~ld----P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~---a~~~lg~~l~~~G~~ 388 (553)
T PRK12370 318 NAMIKAKEHAIKATELD----HNN--PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD---IKYYYGWNLFMAGQL 388 (553)
T ss_pred hHHHHHHHHHHHHHhcC----CCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCCH
Confidence 45677888887776411 112 334555555544 3334566666555544443322 22344445544555
Q ss_pred HHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHH
Q psy6893 729 DDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDL 808 (988)
Q Consensus 729 ~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L 808 (988)
++.+..+...+..|+....-....+.-+...|. -.+++..+.+.+.........-...+|..+...|+.++|...++.+
T Consensus 389 ~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~-~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 389 EEALQTINECLKLDPTRAAAGITKLWITYYHTG-IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC-HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 346666666665444432111111111222342 2455555555443221111112234555567789988888888776
Q ss_pred hcccchhhhhhcHHHHHHHHcCCCC
Q psy6893 809 CEEKDAILRRSGMYTIAMAYCGSGS 833 (988)
Q Consensus 809 ~~~~dp~~r~~~~~~lslAyaGtGn 833 (988)
.... -........++..|++.|+
T Consensus 468 ~~~~--~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 468 STQE--ITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred hhcc--chhHHHHHHHHHHHhccHH
Confidence 5432 2234445556667777554
No 80
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=66.35 E-value=2.2 Score=52.22 Aligned_cols=7 Identities=29% Similarity=0.643 Sum_probs=4.1
Q ss_pred Chhhhhh
Q psy6893 879 NDDVRRE 885 (988)
Q Consensus 879 ~~~vrra 885 (988)
++-|++.
T Consensus 74 ~~av~~~ 80 (539)
T PF10243_consen 74 DEAVKRV 80 (539)
T ss_dssp SHHHHHH
T ss_pred HHHHHHH
Confidence 4566665
No 81
>KOG2891|consensus
Probab=65.26 E-value=34 Score=37.98 Aligned_cols=13 Identities=8% Similarity=0.056 Sum_probs=6.7
Q ss_pred HHHHHHHHhhhcc
Q psy6893 555 QLQARITKLSKIL 567 (988)
Q Consensus 555 ~~~~~~~~l~~Il 567 (988)
+.|+.+++|....
T Consensus 50 snwdlmerlk~ai 62 (445)
T KOG2891|consen 50 SNWDLMERLKGAI 62 (445)
T ss_pred chHHHHHHHHhhc
Confidence 4555555555444
No 82
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=62.29 E-value=11 Score=31.06 Aligned_cols=44 Identities=20% Similarity=0.316 Sum_probs=23.3
Q ss_pred chhhHHHHHhhhccCCch-------HHHHHHHHHhhhcCchhhHHHHHHhhH
Q psy6893 676 YEGGGLYALGLIHANHGA-------VINDYLLGQVKDATNEMVRHGGCLGLG 720 (988)
Q Consensus 676 ~k~GAL~AlGlI~ag~~~-------~~~~~Ll~~l~~s~~~~ir~gA~LGLG 720 (988)
+|.+|+.+||-+..+.+. +++..|...+.++ ++.||..||.+||
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg 53 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD-DDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHh
Confidence 456666677665433332 1344454444333 3356777776665
No 83
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=62.06 E-value=16 Score=50.56 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=77.8
Q ss_pred HHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHH--------------------hcccchhh--hHH
Q psy6893 729 DDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAK--------------------ETQHEKIL--RGL 786 (988)
Q Consensus 729 ~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~--------------------etq~e~i~--R~l 786 (988)
..+|-.++..||.|.........+...|+.++ .++++.++.+.. +++++.+. +++
T Consensus 1644 ~~~~l~il~~~~~d~~~~~~~~~~~~~l~~~c---~~il~~y~~l~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~a~~pv 1720 (1780)
T PLN03076 1644 YQICLTFLQNLILDKPPLAKEAEVESRLVELC---EEVLQFYIETSTAGQDSEDSSSQQPRWLIPLGSGKRRELAARAPL 1720 (1780)
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHH---HHHHHHHHHhhcccccccccccccccccccccchhHHHHHhcchH
Confidence 34577777888877654445556677788888 889999888765 33445544 688
Q ss_pred HHHHHHHhcCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHHh-hhhhhhh
Q psy6893 787 AVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAILR-RSGMYTI 854 (988)
Q Consensus 787 algLgLi~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~~-~lG~ali 854 (988)
.+.+ |.+|+..++ +++-.....+|.+.|..+..+..-...|.....++. |+|-.++
T Consensus 1721 ~v~i-l~~~~~l~~-----------~~f~~~~~~~y~l~~~l~~~e~~~~e~r~~l~~~~~~rvg~~~~ 1777 (1780)
T PLN03076 1721 VVAT-LQAVCGLGD-----------SSFEKNLVRFFPLLAGLISCEHGSNEVQVALSDMLSSWVGPVLL 1777 (1780)
T ss_pred HHHH-HHHHhcCCH-----------HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhhHh
Confidence 8888 888888887 566667777999999999875443444444444444 8887654
No 84
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=61.51 E-value=1.8e+02 Score=29.20 Aligned_cols=152 Identities=13% Similarity=0.061 Sum_probs=65.5
Q ss_pred cCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCc--hHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCC
Q psy6893 651 RGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHG--AVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSAR 728 (988)
Q Consensus 651 ~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~--~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~ 728 (988)
.|+.++++..+...+... ... ..+.+.+|.++...+ .++..++...+...++.. .+...+|.++...++
T Consensus 44 ~~~~~~A~~~~~~~l~~~----p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~g~ 114 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHD----PDD--YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG---DVLNNYGTFLCQQGK 114 (234)
T ss_pred CCCHHHHHHHHHHHHHhC----ccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccc
Confidence 467777777776655311 111 234444555544333 345555444433222211 234445555555444
Q ss_pred HH-HHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHH
Q psy6893 729 DD-IYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRD 807 (988)
Q Consensus 729 ~d-v~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~ 807 (988)
.+ ....+...+..........+-..+|.++...++.+-...++.-......+...-...++..+...|+.+++...++.
T Consensus 115 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 115 YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33 33333333321111111123344566666666655444433333222222111223334434455666666666665
Q ss_pred Hhcc
Q psy6893 808 LCEE 811 (988)
Q Consensus 808 L~~~ 811 (988)
....
T Consensus 195 ~~~~ 198 (234)
T TIGR02521 195 YQQT 198 (234)
T ss_pred HHHh
Confidence 5443
No 85
>KOG4246|consensus
Probab=60.39 E-value=2.6 Score=52.30 Aligned_cols=8 Identities=38% Similarity=0.546 Sum_probs=3.1
Q ss_pred cchhhHHH
Q psy6893 209 VSIDLHLQ 216 (988)
Q Consensus 209 ~~~~l~~~ 216 (988)
+..+.|.|
T Consensus 163 VD~dvffQ 170 (1194)
T KOG4246|consen 163 VDQDVFFQ 170 (1194)
T ss_pred ccHHHHHH
Confidence 33344433
No 86
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=59.04 E-value=5e+02 Score=33.36 Aligned_cols=162 Identities=10% Similarity=-0.039 Sum_probs=93.8
Q ss_pred ccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcCch------------hhHHHH
Q psy6893 648 VIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNE------------MVRHGG 715 (988)
Q Consensus 648 ~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~~~------------~ir~gA 715 (988)
.+..|++++|+..++..+..+..........-+-+++++...+...+++..+.......+.. .-..-+
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 45678899999999887742211001112233344445566666666666654433322210 012234
Q ss_pred HHhhHhhhcCCCC-HHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHh
Q psy6893 716 CLGLGLAAMGSAR-DDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIM 794 (988)
Q Consensus 716 ~LGLGla~~Gs~~-~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~ 794 (988)
.+.++.+++..++ +++.+.|...+..++... .+-+.++.+....++.+-....+.-+.+...++..-.+..++..+.
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~--~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ--GLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 4555555555555 445566666554333332 3445666777777787777776666655555555545566666788
Q ss_pred cCCchhHHHHHHHHhcc
Q psy6893 795 YGQLENADDLVRDLCEE 811 (988)
Q Consensus 795 ~Gr~e~a~~li~~L~~~ 811 (988)
.|+.+.++.+++.+...
T Consensus 440 ~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAR 456 (765)
T ss_pred hCCHHHHHHHHHHHHHh
Confidence 89999999999988754
No 87
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=58.19 E-value=8.8 Score=31.62 Aligned_cols=48 Identities=29% Similarity=0.309 Sum_probs=29.1
Q ss_pred hhHHHHHHhhHhhhcCCC------CHHHHHHHHHhhccCChhhHHHHHHHhhcc
Q psy6893 710 MVRHGGCLGLGLAAMGSA------RDDIYEQLKFNLYQDDAVTGEAAGIAMGLV 757 (988)
Q Consensus 710 ~ir~gA~LGLGla~~Gs~------~~dv~~~L~~~l~~D~~~~~e~AalAlGLI 757 (988)
.+|.+|+.+||-..-+.. -++++..|.+.+..|+......|+.|+|-|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 479999999986321111 123455666666444444566788888753
No 88
>KOG1060|consensus
Probab=58.07 E-value=1.3e+02 Score=38.47 Aligned_cols=218 Identities=13% Similarity=0.073 Sum_probs=116.1
Q ss_pred CCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcCchhhHHHHHHhhHhhh-cCCCCHHHH-HHHHHhhccCChhh-H
Q psy6893 671 PTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEMVRHGGCLGLGLAA-MGSARDDIY-EQLKFNLYQDDAVT-G 747 (988)
Q Consensus 671 s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~-~Gs~~~dv~-~~L~~~l~~D~~~~-~ 747 (988)
..++.+|+-||-.+.-|.-..-..++..-...........+|-.|++++-..| ++....+-+ +.+..+| .|.+.- .
T Consensus 119 DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LL-aD~splVv 197 (968)
T KOG1060|consen 119 DPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLL-ADRSPLVV 197 (968)
T ss_pred CCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHh-cCCCCcch
Confidence 45678999999999987443333433222344445566799999999998777 444433333 3344444 555432 2
Q ss_pred HHHHHHhhcccCCCCCHHHHHHHHHHHHh--cccchhhhHHHHHHHHHhcCCchhHHHHH-HHHhcccchhhhhhcHHHH
Q psy6893 748 EAAGIAMGLVLLGSKSESAIQDMVAYAKE--TQHEKILRGLAVGISFIMYGQLENADDLV-RDLCEEKDAILRRSGMYTI 824 (988)
Q Consensus 748 e~AalAlGLI~vGs~n~d~i~~ll~~~~e--tq~e~i~R~lalgLgLi~~Gr~e~a~~li-~~L~~~~dp~~r~~~~~~l 824 (988)
..|.+|--- ++.-+.|++..-..-+.. -|-+.|-.-+.+++ |+=|.|..-.++.. +.... .++ +.+- ...
T Consensus 198 gsAv~AF~e--vCPerldLIHknyrklC~ll~dvdeWgQvvlI~m-L~RYAR~~l~~P~~~~~~~e-~n~--~~~~-~~~ 270 (968)
T KOG1060|consen 198 GSAVMAFEE--VCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINM-LTRYARHQLPDPTVVDSSLE-DNG--RSCN-LKD 270 (968)
T ss_pred hHHHHHHHH--hchhHHHHhhHHHHHHHhhccchhhhhHHHHHHH-HHHHHHhcCCCccccccccc-cCc--cccc-ccc
Confidence 234444333 465566665432211111 23356666677777 77777776655422 11111 111 0000 000
Q ss_pred HHHHcCCC-ChhHHHHHHHHHHH-----------hhhhhhhhhhhccCCCchHHHHHhhhhhccCCChhhhhhHHhhhhh
Q psy6893 825 AMAYCGSG-SNVATKRLLHDAIL-----------RRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGF 892 (988)
Q Consensus 825 slAyaGtG-nvl~iq~lL~~~~~-----------~~lG~alia~g~~~tgn~~air~ll~~~~sd~~~~vrraa~~alg~ 892 (988)
.-+|.-+- ......++|..|.- .-+-.++..++.. .-+..+++.|++++-+.+ .++-.+--++.+
T Consensus 271 ~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~-~~~~~i~kaLvrLLrs~~--~vqyvvL~nIa~ 347 (968)
T KOG1060|consen 271 KYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK-NQVTKIAKALVRLLRSNR--EVQYVVLQNIAT 347 (968)
T ss_pred cccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH-HHHHHHHHHHHHHHhcCC--cchhhhHHHHHH
Confidence 00011111 11346666666542 1123345566665 466777899999887754 677666677777
Q ss_pred hhhhhhh
Q psy6893 893 ILFRKKR 899 (988)
Q Consensus 893 i~~~npe 899 (988)
++..+|.
T Consensus 348 ~s~~~~~ 354 (968)
T KOG1060|consen 348 ISIKRPT 354 (968)
T ss_pred HHhcchh
Confidence 7776665
No 89
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=57.17 E-value=4.9 Score=42.76 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=6.8
Q ss_pred hHHHHHHhhHhhhc
Q psy6893 711 VRHGGCLGLGLAAM 724 (988)
Q Consensus 711 ir~gA~LGLGla~~ 724 (988)
|....|+.||..++
T Consensus 12 Ii~stsF~LG~lf~ 25 (196)
T PF08229_consen 12 IICSTSFLLGVLFS 25 (196)
T ss_pred ehHhhHHHHHHHHH
Confidence 33445555555443
No 90
>KOG2025|consensus
Probab=55.58 E-value=70 Score=40.15 Aligned_cols=114 Identities=14% Similarity=0.139 Sum_probs=68.2
Q ss_pred HHHHHHHHHHH-Hhcc-cchhhhHHHHH-HHHHhcC--C--chhHHHHHHHHh---cccchhhhhhcHHHHHHHHcCCCC
Q psy6893 764 ESAIQDMVAYA-KETQ-HEKILRGLAVG-ISFIMYG--Q--LENADDLVRDLC---EEKDAILRRSGMYTIAMAYCGSGS 833 (988)
Q Consensus 764 ~d~i~~ll~~~-~etq-~e~i~R~lalg-LgLi~~G--r--~e~a~~li~~L~---~~~dp~~r~~~~~~lslAyaGtGn 833 (988)
.|++..++.++ ..++ .++-.|+=++. |+++.=. . .+.++.+++.|. -+..|..|..++++++ |.
T Consensus 80 ~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLs--rl---- 153 (892)
T KOG2025|consen 80 EDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALS--RL---- 153 (892)
T ss_pred hhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHH--HH----
Confidence 34555555544 3344 45666765554 4554431 1 133555555554 3567888887665543 32
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhccCCCchHHHHHhhhhhccCCChhhhhhHHhhhhhhhhhhhhhhHhhhhhhH
Q psy6893 834 NVATKRLLHDAILRRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRKKRTRRKKKKGAE 909 (988)
Q Consensus 834 vl~iq~lL~~~~~~~lG~alia~g~~~tgn~~air~ll~~~~sd~~~~vrraa~~alg~i~~~npeq~pk~~k~~e 909 (988)
.|+++--+.-+++.|..++.+||++.|||+|-..+ ..++.+.|..+++..
T Consensus 154 ----------------------Q~d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI----~vdnsTlp~IveRar 203 (892)
T KOG2025|consen 154 ----------------------QGDPKDEECPVVNLLKDLIQNDPSDEVRRAALSNI----SVDNSTLPCIVERAR 203 (892)
T ss_pred ----------------------hcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhh----ccCcccchhHHHHhh
Confidence 12333355678999999999999999999997666 445556665554433
No 91
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=55.43 E-value=8.6 Score=40.97 Aligned_cols=8 Identities=50% Similarity=0.754 Sum_probs=4.3
Q ss_pred HHHHhhHh
Q psy6893 714 GGCLGLGL 721 (988)
Q Consensus 714 gA~LGLGl 721 (988)
+++++||+
T Consensus 66 h~v~~lgl 73 (196)
T PF08229_consen 66 HIVIGLGL 73 (196)
T ss_pred HHHHHHHH
Confidence 44555555
No 92
>KOG2357|consensus
Probab=54.67 E-value=19 Score=42.20 Aligned_cols=7 Identities=29% Similarity=0.226 Sum_probs=2.9
Q ss_pred hHHHHHh
Q psy6893 864 NVATKRL 870 (988)
Q Consensus 864 ~~air~l 870 (988)
+.+.+.+
T Consensus 319 P~~~~~~ 325 (440)
T KOG2357|consen 319 PEAKRML 325 (440)
T ss_pred chhhhhh
Confidence 3344443
No 93
>COG4499 Predicted membrane protein [Function unknown]
Probab=54.13 E-value=15 Score=42.63 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=5.4
Q ss_pred HHHHHHHhhcCCC
Q psy6893 607 TIIANAFMHSGTT 619 (988)
Q Consensus 607 ~~~ana~~naGt~ 619 (988)
+-|+-+++.+-|.
T Consensus 175 t~f~ksil~a~Tl 187 (434)
T COG4499 175 TPFEKSILDAETL 187 (434)
T ss_pred CHHHHHHhhhhhH
Confidence 3344444444443
No 94
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=53.79 E-value=1.5e+02 Score=31.63 Aligned_cols=6 Identities=33% Similarity=0.385 Sum_probs=2.6
Q ss_pred cchhhh
Q psy6893 812 KDAILR 817 (988)
Q Consensus 812 ~dp~~r 817 (988)
+|++.|
T Consensus 31 PD~YtR 36 (197)
T PRK12585 31 PDVYTR 36 (197)
T ss_pred CcHHHH
Confidence 444444
No 95
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=53.48 E-value=38 Score=41.88 Aligned_cols=197 Identities=17% Similarity=0.096 Sum_probs=104.1
Q ss_pred HHHHHHhhcCCCchhhhcchhHHHHhhcccc--hhhhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHh
Q psy6893 608 IIANAFMHSGTTSDQFLRDNLEWLARATNWA--KLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALG 685 (988)
Q Consensus 608 ~~ana~~naGt~~D~flr~~~~wl~k~~~w~--kfsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlG 685 (988)
.|..++..|||..-..+. .+|+.+.+--. .-...++|...-.--..+-+..+..++.+.....+++.+..|++++|
T Consensus 383 ~~lDal~~aGT~~av~~i--~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~ 460 (618)
T PF01347_consen 383 IFLDALPQAGTNPAVKFI--KDLIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLG 460 (618)
T ss_dssp HHHHHHHHH-SHHHHHHH--HHHHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHH--HHHHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHH
Confidence 578888889988533322 34666543211 11122222222211123455555555432112345788999999998
Q ss_pred hhccC---Cc--------------hHHHHHHHHHhh---hcCchhhHHHHHHhhHhhhcCCCCHHHHHHHHHhhccCChh
Q psy6893 686 LIHAN---HG--------------AVINDYLLGQVK---DATNEMVRHGGCLGLGLAAMGSARDDIYEQLKFNLYQDDAV 745 (988)
Q Consensus 686 lI~ag---~~--------------~~~~~~Ll~~l~---~s~~~~ir~gA~LGLGla~~Gs~~~dv~~~L~~~l~~D~~~ 745 (988)
-+.-. .. ...+.+|...+. +..++..++-++-+||=+ | -+.++..|.|.+..+...
T Consensus 461 ~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--g--~~~~i~~l~~~i~~~~~~ 536 (618)
T PF01347_consen 461 SLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--G--HPESIPVLLPYIEGKEEV 536 (618)
T ss_dssp HHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T---GGGHHHHHTTSTTSS-S
T ss_pred HHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--C--CchhhHHHHhHhhhcccc
Confidence 76321 10 124666666665 334557788888899864 5 356888999988655233
Q ss_pred hH---HHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhc-CCchhHHHHHHHHhccc
Q psy6893 746 TG---EAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMY-GQLENADDLVRDLCEEK 812 (988)
Q Consensus 746 ~~---e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~-Gr~e~a~~li~~L~~~~ 812 (988)
+. -+|..|+.-+ .-.++..+.+.++++..++..+.=.|.+|+-+ |+-- =.......+...|...+
T Consensus 537 ~~~~R~~Ai~Alr~~-~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~-lm~~~P~~~~l~~i~~~l~~E~ 605 (618)
T PF01347_consen 537 PHFIRVAAIQALRRL-AKHCPEKVREILLPIFMNTTEDPEVRIAAYLI-LMRCNPSPSVLQRIAQSLWNEP 605 (618)
T ss_dssp -HHHHHHHHHTTTTG-GGT-HHHHHHHHHHHHH-TTS-HHHHHHHHHH-HHHT---HHHHHHHHHHHTT-S
T ss_pred chHHHHHHHHHHHHH-hhcCcHHHHHHHHHHhcCCCCChhHHHHHHHH-HHhcCCCHHHHHHHHHHHhhCc
Confidence 22 2566787754 44455677788888887766544478888755 3332 22244555555555443
No 96
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=53.10 E-value=45 Score=41.07 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=87.5
Q ss_pred hhhhhhhhccccc--CChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchH-HHHHHHHHhhhcCchhhHHHH
Q psy6893 639 KLTATASLGVIHR--GHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAV-INDYLLGQVKDATNEMVRHGG 715 (988)
Q Consensus 639 kfsA~ASLG~Ih~--gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~-~~~~Ll~~l~~s~~~~ir~gA 715 (988)
+.+|++++|.|.. | +.+.+.+|-.-|. ..+...|-+.-.|+|++.--+|.. +...|++.+.+ ++..++.|.
T Consensus 747 RR~A~~tfG~Is~aiG-PqdvL~~LlnnLk----vqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~T-Pe~nVQnGv 820 (975)
T COG5181 747 RRNATETFGCISRAIG-PQDVLDILLNNLK----VQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYET-PEANVQNGV 820 (975)
T ss_pred HHhhhhhhhhHHhhcC-HHHHHHHHHhcch----HHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccC-chhHHHHhH
Confidence 5799999999975 3 2334444444443 456788999999999996656554 78888888744 456788888
Q ss_pred HHhhHhh--hcCCCCHHHHHHHHHhhc---cCChhh-HHH-----HHHHhhcccCCCCCHHHHHHHHHHH
Q psy6893 716 CLGLGLA--AMGSARDDIYEQLKFNLY---QDDAVT-GEA-----AGIAMGLVLLGSKSESAIQDMVAYA 774 (988)
Q Consensus 716 ~LGLGla--~~Gs~~~dv~~~L~~~l~---~D~~~~-~e~-----AalAlGLI~vGs~n~d~i~~ll~~~ 774 (988)
.=++... |+|...-+-.-.+.|++. +|.... .+. .-++++ ..|+|+.|+.=-++.++
T Consensus 821 Lkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Ln--c~gtg~eda~IHLlNll 888 (975)
T COG5181 821 LKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLN--CPGTGDEDAAIHLLNLL 888 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcC--CCCcccHHHHHHHHHHh
Confidence 7666554 788887776777888874 243322 222 335666 56999999876666654
No 97
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=52.82 E-value=5.4e+02 Score=31.88 Aligned_cols=13 Identities=38% Similarity=0.373 Sum_probs=8.1
Q ss_pred HHHhhhccCCCHH
Q psy6893 460 TIAMAYCGSGSNV 472 (988)
Q Consensus 460 ~~~~AYaGTGN~~ 472 (988)
-.+.+|...|+..
T Consensus 199 ~~a~a~~~lg~~~ 211 (615)
T TIGR00990 199 RRANAYDGLGKYA 211 (615)
T ss_pred HHHHHHHHcCCHH
Confidence 5566677777643
No 98
>KOG0213|consensus
Probab=52.60 E-value=45 Score=41.90 Aligned_cols=129 Identities=17% Similarity=0.255 Sum_probs=92.5
Q ss_pred chhhhhhhhccccc--CChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchH-HHHHHHHHhhhcCchhhHHH
Q psy6893 638 AKLTATASLGVIHR--GHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAV-INDYLLGQVKDATNEMVRHG 714 (988)
Q Consensus 638 ~kfsA~ASLG~Ih~--gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~-~~~~Ll~~l~~s~~~~ir~g 714 (988)
=+..|+.++|.|.. |-. +.|..|-.-|. ..+-.-|-+.-.|++++.-.++.. ++.+|++.+.. ++-.++.|
T Consensus 941 iRRaa~nTfG~IakaIGPq-dVLatLlnnLk----vqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrt-Pe~nVQnG 1014 (1172)
T KOG0213|consen 941 IRRAAVNTFGYIAKAIGPQ-DVLATLLNNLK----VQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRT-PEANVQNG 1014 (1172)
T ss_pred HHHHHHhhhhHHHHhcCHH-HHHHHHHhcch----HHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccC-chhHHHHh
Confidence 46789999999986 433 34444444443 456788999999999997667664 78889988854 45578888
Q ss_pred HHHhhHhh--hcCCCCHHHHHHHHHhhc---cCChhh-HH-----HHHHHhhcccCCCCCHHHHHHHHHHH
Q psy6893 715 GCLGLGLA--AMGSARDDIYEQLKFNLY---QDDAVT-GE-----AAGIAMGLVLLGSKSESAIQDMVAYA 774 (988)
Q Consensus 715 A~LGLGla--~~Gs~~~dv~~~L~~~l~---~D~~~~-~e-----~AalAlGLI~vGs~n~d~i~~ll~~~ 774 (988)
..=+|..- |+|....+-+-.+.|+|. .|...+ ++ ..-+++| ..|+|..|++--++.++
T Consensus 1015 VLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg--~~g~g~eda~iHLLN~i 1083 (1172)
T KOG0213|consen 1015 VLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALG--VPGTGCEDALIHLLNLI 1083 (1172)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcC--CCCcCcHHHHHHHHHHh
Confidence 88777655 788888887777888885 244332 22 2346777 57999999988888875
No 99
>KOG1059|consensus
Probab=52.33 E-value=74 Score=39.98 Aligned_cols=192 Identities=15% Similarity=0.119 Sum_probs=103.9
Q ss_pred CCCccchhhHHHHHhhhccCCchH---HHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHHHHHHHHHhhc---cCCh
Q psy6893 671 PTSGYYEGGGLYALGLIHANHGAV---INDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDDIYEQLKFNLY---QDDA 744 (988)
Q Consensus 671 s~~~~~k~GAL~AlGlI~ag~~~~---~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~dv~~~L~~~l~---~D~~ 744 (988)
++-+|+|.-|++.+=.+.-..+.. ....|.+.|.+++ +-|+- |+.+. ++-....|+.=|-.|-|++| .+++
T Consensus 155 sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpD-p~V~S-AAV~V-ICELArKnPknyL~LAP~ffkllttSs 231 (877)
T KOG1059|consen 155 SSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPD-PSVVS-AAVSV-ICELARKNPQNYLQLAPLFYKLLVTSS 231 (877)
T ss_pred cCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCC-chHHH-HHHHH-HHHHHhhCCcccccccHHHHHHHhccC
Confidence 677899999999888887666553 3566777776554 33332 32222 12345677777777777776 2222
Q ss_pred --hh-H----HHHHHHhhcccCCCCCHHHHHHHHHHHHhccc-----chhhhHHHHHHHHHhc-CCchhHHHHHH---HH
Q psy6893 745 --VT-G----EAAGIAMGLVLLGSKSESAIQDMVAYAKETQH-----EKILRGLAVGISFIMY-GQLENADDLVR---DL 808 (988)
Q Consensus 745 --~~-~----e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~-----e~i~R~lalgLgLi~~-Gr~e~a~~li~---~L 808 (988)
+. . -+++++.=---+| -.+++.|..+++.|.. |=+..-+++++ +-+. .....+...++ .+
T Consensus 232 NNWmLIKiiKLF~aLtplEPRLg---KKLieplt~li~sT~AmSLlYECvNTVVa~s~-s~g~~d~~asiqLCvqKLr~f 307 (877)
T KOG1059|consen 232 NNWVLIKLLKLFAALTPLEPRLG---KKLIEPITELMESTVAMSLLYECVNTVVAVSM-SSGMSDHSASIQLCVQKLRIF 307 (877)
T ss_pred CCeehHHHHHHHhhccccCchhh---hhhhhHHHHHHHhhHHHHHHHHHHHHheeehh-ccCCCCcHHHHHHHHHHHhhh
Confidence 21 1 1466554444445 4566777777666642 22223333333 2222 22223333333 34
Q ss_pred hcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHHhhhhhhhhhhhccCCCchHHHHHhhhhh---ccCCChhhh-h
Q psy6893 809 CEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAILRRSGMYTIAMAYCGSGSNVATKRLLHVA---VSDVNDDVR-R 884 (988)
Q Consensus 809 ~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~~~lG~alia~g~~~tgn~~air~ll~~~---~sd~~~~vr-r 884 (988)
..+.||.++|.+.. +|++++--++.+|++...+. .+|.|+.+| |
T Consensus 308 iedsDqNLKYlgLl--------------------------------am~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlr 355 (877)
T KOG1059|consen 308 IEDSDQNLKYLGLL--------------------------------AMSKILKTHPKAVQAHKDLILRCLDDKDESIRLR 355 (877)
T ss_pred hhcCCccHHHHHHH--------------------------------HHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHH
Confidence 46678888887553 23333344555555544433 566666777 4
Q ss_pred hHHhhhhhhhhhhhhhh
Q psy6893 885 EAVTALGFILFRKKRTR 901 (988)
Q Consensus 885 aa~~alg~i~~~npeq~ 901 (988)
|.-+-.|.|...|-..+
T Consensus 356 ALdLl~gmVskkNl~eI 372 (877)
T KOG1059|consen 356 ALDLLYGMVSKKNLMEI 372 (877)
T ss_pred HHHHHHHHhhhhhHHHH
Confidence 55555566665554333
No 100
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=51.13 E-value=63 Score=38.10 Aligned_cols=13 Identities=15% Similarity=0.529 Sum_probs=6.9
Q ss_pred cchhhhHHHHHHH
Q psy6893 779 HEKILRGLAVGIS 791 (988)
Q Consensus 779 ~e~i~R~lalgLg 791 (988)
++...|+++++++
T Consensus 8 ~~~~~~aiiiSv~ 20 (387)
T PRK09510 8 NDKLKRAIIISVV 20 (387)
T ss_pred cccchhHHHHHHH
Confidence 3445555555553
No 101
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=48.70 E-value=4.5e+02 Score=30.81 Aligned_cols=146 Identities=12% Similarity=0.070 Sum_probs=70.2
Q ss_pred HHHHHHhhccCCChhHHHHHHHhhhhcc----hHHHHHHHHHHHHHHhcCChhhHHHHHHHHhhcchhhhhccchhHHHH
Q psy6893 357 GIAMGLVLLGSKSESAIQDMVAYAKETQ----HEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAM 432 (988)
Q Consensus 357 ~lglGL~~~Gs~~~~~~~~L~~~~~dt~----~E~~~r~lalgl~~v~~g~~e~a~~li~~L~~~~d~~lr~~~~~~~~l 432 (988)
-..+|.+|...++-+....+++.+.... .+...........++..+..+.....++.+.+......|. .....+
T Consensus 190 l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~--~~~l~~ 267 (409)
T TIGR00540 190 LKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRH--NIALKI 267 (409)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhC--CHHHHH
Confidence 4456677777777776666666555331 1111111122222232222221112222222221111222 122233
Q ss_pred Hhhhhhhhcccc--chhhHHh-hc-cchhH-----HHHHhhhccCCCHHHHHHHHHHhccCCCchhhHHHHHHHHHHhhc
Q psy6893 433 AYCVSYLYFDLF--SDLTYRI-VK-NRSGM-----YTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFR 503 (988)
Q Consensus 433 ~l~Lgll~~g~~--~e~~l~~-~~-~~~~~-----~~~~~AYaGTGN~~~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~~~ 503 (988)
+++-.++..|+. +...++. +. .|-.. .+....+...+|..+..+++.-......+|-......++|.++++
T Consensus 268 ~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~ 347 (409)
T TIGR00540 268 ALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK 347 (409)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 445555555555 4444433 32 22222 456666677788877777776666555544444567799999986
Q ss_pred C
Q psy6893 504 T 504 (988)
Q Consensus 504 ~ 504 (988)
.
T Consensus 348 ~ 348 (409)
T TIGR00540 348 H 348 (409)
T ss_pred c
Confidence 5
No 102
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=48.29 E-value=18 Score=26.61 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=19.2
Q ss_pred HHhhhhhccCCChhhhhhHHhhhhhhh
Q psy6893 868 KRLLHVAVSDVNDDVRREAVTALGFIL 894 (988)
Q Consensus 868 r~ll~~~~sd~~~~vrraa~~alg~i~ 894 (988)
..+++. .+|++++||.+|+.++|-+.
T Consensus 3 p~l~~~-l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 3 PILLQL-LNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHH-HT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCCHHHHHHHHHHHHHHH
Confidence 344555 45899999999999998765
No 103
>KOG2891|consensus
Probab=46.59 E-value=1e+02 Score=34.45 Aligned_cols=8 Identities=13% Similarity=0.409 Sum_probs=4.0
Q ss_pred HHHHHHHH
Q psy6893 767 IQDMVAYA 774 (988)
Q Consensus 767 i~~ll~~~ 774 (988)
.++++|+.
T Consensus 223 feayvqfm 230 (445)
T KOG2891|consen 223 FEAYVQFM 230 (445)
T ss_pred HHHHHHHH
Confidence 34555554
No 104
>COG4499 Predicted membrane protein [Function unknown]
Probab=46.01 E-value=30 Score=40.31 Aligned_cols=10 Identities=30% Similarity=0.743 Sum_probs=4.3
Q ss_pred HHHHHHHHcC
Q psy6893 821 MYTIAMAYCG 830 (988)
Q Consensus 821 ~~~lslAyaG 830 (988)
.|.++..|+-
T Consensus 284 ~Y~LA~SYV~ 293 (434)
T COG4499 284 QYILAVSYVN 293 (434)
T ss_pred HHHHHHHHhh
Confidence 3444444443
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=45.06 E-value=4.9e+02 Score=29.15 Aligned_cols=194 Identities=15% Similarity=0.096 Sum_probs=102.3
Q ss_pred cccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCc--hHHHHHHHHHhhhcC-chhhHHHHHHhhHhhh
Q psy6893 647 GVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHG--AVINDYLLGQVKDAT-NEMVRHGGCLGLGLAA 723 (988)
Q Consensus 647 G~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~--~~~~~~Ll~~l~~s~-~~~ir~gA~LGLGla~ 723 (988)
.....|+.+++...+.+.+... . .+ .-+...+|.+....+ ++++.++...+...+ +..........++..+
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~--p--~~--~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELN--P--DD--AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC--C--CC--cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 3445688889999998888521 1 12 344556666655443 456666655443322 2233334444566666
Q ss_pred cCCCCHH-HHHHHHHhhccCC--hhhHH---HHHHHhhcccCCC-CCHHHHHHHHHHHHhcccchhh--hHHHHHHHHHh
Q psy6893 724 MGSARDD-IYEQLKFNLYQDD--AVTGE---AAGIAMGLVLLGS-KSESAIQDMVAYAKETQHEKIL--RGLAVGISFIM 794 (988)
Q Consensus 724 ~Gs~~~d-v~~~L~~~l~~D~--~~~~e---~AalAlGLI~vGs-~n~d~i~~ll~~~~etq~e~i~--R~lalgLgLi~ 794 (988)
...++.+ ++..+...+.... ....+ .+.+..-+.+-|- ...+-.+.+.+.........+. ..+....+++.
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 6666654 3444433332211 11111 1233333333441 1112223334433222111222 33466677788
Q ss_pred cCCchhHHHHHHHHhcccch---h----hhhhcHHHHHHHHcCCCChhHHHHHHHHHHH
Q psy6893 795 YGQLENADDLVRDLCEEKDA---I----LRRSGMYTIAMAYCGSGSNVATKRLLHDAIL 846 (988)
Q Consensus 795 ~Gr~e~a~~li~~L~~~~dp---~----~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~ 846 (988)
.|+.+.+..+++.+...-.. . .....-...++++...||.-...++|..+..
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 89999999999988764332 1 1223346778888888888777777777653
No 106
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=44.00 E-value=1.2e+02 Score=37.28 Aligned_cols=183 Identities=19% Similarity=0.220 Sum_probs=100.1
Q ss_pred HHHHhhhccCCchH--HHHHHHHHhhhcCchhhHHHHHHhhHhh-hcCCCCHHHHHHHHHhhc---cC--ChhhHHH--H
Q psy6893 681 LYALGLIHANHGAV--INDYLLGQVKDATNEMVRHGGCLGLGLA-AMGSARDDIYEQLKFNLY---QD--DAVTGEA--A 750 (988)
Q Consensus 681 L~AlGlI~ag~~~~--~~~~Ll~~l~~s~~~~ir~gA~LGLGla-~~Gs~~~dv~~~L~~~l~---~D--~~~~~e~--A 750 (988)
+-|+|+++--.+.+ +...|++++..+.+-.-+|..+++.-.. -+=..|.+.+..+.|.|. +| +.+-.|+ +
T Consensus 208 YHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~ 287 (898)
T COG5240 208 YHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARA 287 (898)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHH
Confidence 34678876655544 4556677776554222333333333211 112468889999999885 34 2344453 3
Q ss_pred HHHhhcccCCCCCHHH-HHHHHHHHHhcccchhhhHHHHH----HHHHhcCCchhHHHHHHHHhcccchhhhhhcHHHHH
Q psy6893 751 GIAMGLVLLGSKSESA-IQDMVAYAKETQHEKILRGLAVG----ISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIA 825 (988)
Q Consensus 751 alAlGLI~vGs~n~d~-i~~ll~~~~etq~e~i~R~lalg----LgLi~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~ls 825 (988)
-.++..=.+|+-..+. ++.+-.++ +.++-..||-|+- |++.+...--.+..-+|.|.++.+. ...+|++.
T Consensus 288 v~~~~~~nv~~~~~~~~vs~L~~fL--~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr---~IstyAIT 362 (898)
T COG5240 288 VCALSEENVGSQFVDQTVSSLRTFL--KSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENR---TISTYAIT 362 (898)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccc---cchHHHHH
Confidence 3344455567443332 22233333 4466677888775 3444444444455566666666543 34455443
Q ss_pred HHHcCCCChhHHHHHHHHHHHhhhhhhhhhhhccCCCchHHHHHhhhhh---ccCCChhhhhh---HHhhhhhhhhhhhh
Q psy6893 826 MAYCGSGSNVATKRLLHDAILRRSGMYTIAMAYCGSGSNVATKRLLHVA---VSDVNDDVRRE---AVTALGFILFRKKR 899 (988)
Q Consensus 826 lAyaGtGnvl~iq~lL~~~~~~~lG~alia~g~~~tgn~~air~ll~~~---~sd~~~~vrra---a~~alg~i~~~npe 899 (988)
-- . .||++..|.+|.... ++|.+|+-+.- |.-+|.+..++...
T Consensus 363 tL-L------------------------------KTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~ 411 (898)
T COG5240 363 TL-L------------------------------KTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL 411 (898)
T ss_pred HH-H------------------------------HcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH
Confidence 21 1 188888888888766 67777777753 34445555554433
No 107
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=43.79 E-value=53 Score=36.30 Aligned_cols=38 Identities=16% Similarity=-0.045 Sum_probs=18.5
Q ss_pred hhhhhhhhhhccCCCchHHHHHhhhh-hccCCChhhhhhH
Q psy6893 848 RSGMYTIAMAYCGSGSNVATKRLLHV-AVSDVNDDVRREA 886 (988)
Q Consensus 848 ~lG~alia~g~~~tgn~~air~ll~~-~~sd~~~~vrraa 886 (988)
+|....|.|=+. .--..++-+|.-+ +-.|.+-||=.|=
T Consensus 24 ~~~~~~~~~~~~-~~~~~~~~kL~iYDaDGDGDFDveDAK 62 (243)
T PF05279_consen 24 VWSSVAVVMFDL-VDYKSVLGKLGIYDADGDGDFDVEDAK 62 (243)
T ss_pred HHHhhHhhheeh-hhHHHHhhhheeeeccCCCcccccccc
Confidence 555555555554 4444444444221 2445556666543
No 108
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=43.18 E-value=7.4e+02 Score=30.69 Aligned_cols=151 Identities=10% Similarity=-0.014 Sum_probs=70.3
Q ss_pred ccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCC--chHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCC
Q psy6893 650 HRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANH--GAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSA 727 (988)
Q Consensus 650 h~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~--~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~ 727 (988)
.+|+.++++..++.-+..+ + ....+.+.+|.++... ..+++.++...+...++.. .+...+|.++.-.+
T Consensus 343 ~~g~~~eA~~~~~kal~l~-----P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~lg~~~~~~g 413 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELD-----P-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP---DIYYHRAQLHFIKG 413 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC-----C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcC
Confidence 3678888888888776421 1 1233555555554433 3345555544443322211 13344555554444
Q ss_pred C-HHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHH
Q psy6893 728 R-DDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVR 806 (988)
Q Consensus 728 ~-~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~ 806 (988)
+ ++....+...+..++... .+-+-+|.++...++.+-....+.-..........-...+|..+.-.|+.+++....+
T Consensus 414 ~~~~A~~~~~kal~l~P~~~--~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 491 (615)
T TIGR00990 414 EFAQAGKDYQKSIDLDPDFI--FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD 491 (615)
T ss_pred CHHHHHHHHHHHHHcCccCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4 334444444443333221 1223445555555554433333332222211111223344555666777777766666
Q ss_pred HHhcc
Q psy6893 807 DLCEE 811 (988)
Q Consensus 807 ~L~~~ 811 (988)
.....
T Consensus 492 ~Al~l 496 (615)
T TIGR00990 492 TAIEL 496 (615)
T ss_pred HHHhc
Confidence 64433
No 109
>KOG2809|consensus
Probab=42.96 E-value=15 Score=42.01 Aligned_cols=10 Identities=0% Similarity=-0.293 Sum_probs=6.0
Q ss_pred HHHHHhhcCC
Q psy6893 657 ALAHMQSYLP 666 (988)
Q Consensus 657 ~l~~L~~yL~ 666 (988)
|..+|.+|=+
T Consensus 29 g~KlLekmGW 38 (326)
T KOG2809|consen 29 GKKLLEKMGW 38 (326)
T ss_pred HHHHHHHcCC
Confidence 5566666655
No 110
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=42.03 E-value=90 Score=36.79 Aligned_cols=37 Identities=11% Similarity=0.017 Sum_probs=23.0
Q ss_pred hcchhHHHHhhcccchhhhhhhhcccccCChHHHHHHHhhcC
Q psy6893 624 LRDNLEWLARATNWAKLTATASLGVIHRGHETEALAHMQSYL 665 (988)
Q Consensus 624 lr~~~~wl~k~~~w~kfsA~ASLG~Ih~gn~~~~l~~L~~yL 665 (988)
|..+.+|=.. .+|.||.-+..+|-..+ .....+..-|
T Consensus 70 l~a~S~wk~~-rD~~Kfera~~f~~~Lp----~IR~~~~~dL 106 (391)
T smart00435 70 LAASSSLKGQ-SDRKKYEKARKLKKHID----KIRKDYTKDL 106 (391)
T ss_pred ECCCchhhhh-hHHHHHHHHHHHHHHHH----HHHHHHHHHh
Confidence 4556777555 67888888877775544 3444444444
No 111
>PRK04195 replication factor C large subunit; Provisional
Probab=40.52 E-value=17 Score=43.83 Aligned_cols=10 Identities=10% Similarity=0.152 Sum_probs=3.7
Q ss_pred HHHhcCCchH
Q psy6893 579 FLIRSNKTDM 588 (988)
Q Consensus 579 fL~~~n~tD~ 588 (988)
++.+..+.|+
T Consensus 187 ~Ia~~s~GDl 196 (482)
T PRK04195 187 EIAERSGGDL 196 (482)
T ss_pred HHHHHcCCCH
Confidence 3333333333
No 112
>PTZ00429 beta-adaptin; Provisional
Probab=39.88 E-value=9.5e+02 Score=31.05 Aligned_cols=92 Identities=12% Similarity=0.176 Sum_probs=66.3
Q ss_pred HHHHhcccCCCCCCCCCccchhHHHHHhhhccCCCCchhHHHHHHhhhhcCCCchhHHHHHHHHHHHhhccCCC----hh
Q psy6893 296 LAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEDDAVTGEAAGIAMGLVLLGSKS----ES 371 (988)
Q Consensus 296 l~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~~~~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~~~Gs~~----~~ 371 (988)
.+.|.+-+-+ .+++++|=||-.++-|.. . ...+++..-|+..+...++-+|-+|++++.=+|--..+ ..
T Consensus 107 INtl~KDl~d----~Np~IRaLALRtLs~Ir~--~-~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~ 179 (746)
T PTZ00429 107 VNTFLQDTTN----SSPVVRALAVRTMMCIRV--S-SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQD 179 (746)
T ss_pred HHHHHHHcCC----CCHHHHHHHHHHHHcCCc--H-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccc
Confidence 3444454543 589999999999987643 2 36778887788877777899999999999988865432 24
Q ss_pred HHHHHHHhhhhcchHHHHHHHHH
Q psy6893 372 AIQDMVAYAKETQHEKILRGLAV 394 (988)
Q Consensus 372 ~~~~L~~~~~dt~~E~~~r~lal 394 (988)
.++.|..++.|++..++..++++
T Consensus 180 ~~~~L~~LL~D~dp~Vv~nAl~a 202 (746)
T PTZ00429 180 FKKDLVELLNDNNPVVASNAAAI 202 (746)
T ss_pred hHHHHHHHhcCCCccHHHHHHHH
Confidence 56777777788777776655554
No 113
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=39.43 E-value=1.6e+02 Score=33.68 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=65.9
Q ss_pred chhHHHHHHHHHHHhhccCCChhHH--------HHHHHhhhhcc-hHHHHHHHHHHHHHHhcCChhhHHHHHHHHhhcch
Q psy6893 349 DAVTGEAAGIAMGLVLLGSKSESAI--------QDMVAYAKETQ-HEKILRGLAVGISFIMYGQLENADDLVRDLCEEKD 419 (988)
Q Consensus 349 ~~~~~~aA~lglGL~~~Gs~~~~~~--------~~L~~~~~dt~-~E~~~r~lalgl~~v~~g~~e~a~~li~~L~~~~d 419 (988)
+...|++|--++--++...--.+.+ +.+...+...+ .|...++-+++|..|-.|..+.++.+++.+...=.
T Consensus 56 ~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~ 135 (309)
T PF05004_consen 56 SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLK 135 (309)
T ss_pred CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Confidence 4666666666665555444333332 33333333322 35555556677777776655555555555432223
Q ss_pred hhhhccch--hHHHH-HhhhhhhhccccchhhHHhhccchhHHHHHhhhccCCCHHHHH---HHHH--Hhcc--------
Q psy6893 420 AILRRSGM--YTIAM-AYCVSYLYFDLFSDLTYRIVKNRSGMYTIAMAYCGSGSNVATK---RLLH--VAVS-------- 483 (988)
Q Consensus 420 ~~lr~~~~--~~~~l-~l~Lgll~~g~~~e~~l~~~~~~~~~~~~~~AYaGTGN~~~Iq---~LLh--i~~s-------- 483 (988)
++++.+.. -.|.- +.|||+ |+|.|.++...+. +.|. +..+
T Consensus 136 ~~l~d~s~~~~~R~~~~~aLai------------------------~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~ 191 (309)
T PF05004_consen 136 RILTDSSASPKARAACLEALAI------------------------CTFVGGSDEEETEELMESLESIFLLSILKSDGNA 191 (309)
T ss_pred HHHhCCccchHHHHHHHHHHHH------------------------HHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCc
Confidence 33333211 11111 123433 4566666677777 4554 1111
Q ss_pred -----CCCchhhHHHHHHHHHHhh
Q psy6893 484 -----DVNDDVRREAVTALGFILF 502 (988)
Q Consensus 484 -----~~~~dvrr~AV~~lg~I~~ 502 (988)
..+..+..+|+.+-||++.
T Consensus 192 ~~~~~~~~~~l~~aAL~aW~lLlt 215 (309)
T PF05004_consen 192 PVVAAEDDAALVAAALSAWALLLT 215 (309)
T ss_pred ccccCCCccHHHHHHHHHHHHHHh
Confidence 1123467888888888884
No 114
>KOG2809|consensus
Probab=39.00 E-value=14 Score=42.25 Aligned_cols=16 Identities=25% Similarity=0.273 Sum_probs=9.1
Q ss_pred hhccCCChhhhhhHHh
Q psy6893 873 VAVSDVNDDVRREAVT 888 (988)
Q Consensus 873 ~~~sd~~~~vrraa~~ 888 (988)
.+.++.+..+.+++++
T Consensus 159 ~~~~~~D~~~~k~~s~ 174 (326)
T KOG2809|consen 159 EASEDQDSSVKKMASL 174 (326)
T ss_pred eeccccchhhhHhhhh
Confidence 3444556667766653
No 115
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=38.59 E-value=67 Score=25.24 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhcCCCCchhHHHHH
Q psy6893 73 YVNMAQCWIYLDDPRSVANLLGKLVAGSADDDLMAAQI 110 (988)
Q Consensus 73 y~~~~qc~~~Lnd~~~va~il~~L~~~~~~~~l~ayQi 110 (988)
|..+.+.+..+|+++...++|.+.++...++...-+.+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 67899999999999999999999998766665444443
No 116
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=38.48 E-value=4.2e+02 Score=26.53 Aligned_cols=131 Identities=12% Similarity=0.032 Sum_probs=54.8
Q ss_pred ccchhhHHHHHhhhccCCch--HHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHH-HHHHHHHhhccCChhhHHHH
Q psy6893 674 GYYEGGGLYALGLIHANHGA--VINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDD-IYEQLKFNLYQDDAVTGEAA 750 (988)
Q Consensus 674 ~~~k~GAL~AlGlI~ag~~~--~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~d-v~~~L~~~l~~D~~~~~e~A 750 (988)
......+.+.+|.+....+. +++..+...+...++. ..+...+|.++.-.++.+ ....+...+..++... .+
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~ 101 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD---YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG--DV 101 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HH
Confidence 34456666666666554443 3555554444333221 124445555665555533 3333333332222111 12
Q ss_pred HHHhhcccCCCCCHHHHHHHHHHHHhcc-c-chhhhHHHHHHHHHhcCCchhHHHHHHHHh
Q psy6893 751 GIAMGLVLLGSKSESAIQDMVAYAKETQ-H-EKILRGLAVGISFIMYGQLENADDLVRDLC 809 (988)
Q Consensus 751 alAlGLI~vGs~n~d~i~~ll~~~~etq-~-e~i~R~lalgLgLi~~Gr~e~a~~li~~L~ 809 (988)
-..+|.++.-.++.+-...+.+-..+.. + ....-...+|..+...|+.+.+...++...
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRAL 162 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2233444444444443333333222211 1 111122233444455556555555555444
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=37.22 E-value=3.3e+02 Score=28.70 Aligned_cols=75 Identities=19% Similarity=0.107 Sum_probs=43.3
Q ss_pred ccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCc--hHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcC
Q psy6893 648 VIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHG--AVINDYLLGQVKDATNEMVRHGGCLGLGLAAMG 725 (988)
Q Consensus 648 ~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~--~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~G 725 (988)
....|+.++++..++..+... ++++ ...-+.+.+|.++-..+ .+++..+...+...++.....-+...+|.++..
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~--p~~~-~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~ 119 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRY--PFSP-YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYN 119 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCch-hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHH
Confidence 355788889999988776421 1122 22345666666655554 346666665555444433333356677777654
No 118
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=37.16 E-value=1.2e+03 Score=31.29 Aligned_cols=183 Identities=14% Similarity=0.008 Sum_probs=89.1
Q ss_pred ccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhh--hccCCchHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCC
Q psy6893 650 HRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGL--IHANHGAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSA 727 (988)
Q Consensus 650 h~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGl--I~ag~~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~ 727 (988)
..|+.++++..+...+.. .+.. .+.+.+|. ...|...+++.++...+...++ ....++.++.-+..+|-
T Consensus 521 ~~Gr~eeAi~~~rka~~~-----~p~~--~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr- 591 (987)
T PRK09782 521 QVEDYATALAAWQKISLH-----DMSN--EDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQ- 591 (987)
T ss_pred HCCCHHHHHHHHHHHhcc-----CCCc--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCC-
Confidence 567777777777765431 1111 22344443 3333333445544433322222 23333333333322342
Q ss_pred CHHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHH
Q psy6893 728 RDDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRD 807 (988)
Q Consensus 728 ~~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~ 807 (988)
-+++...+...+..++. ..+-+.+|.+..-.++.+-....+.-+.....+...-...+|..+...|+.+++...++.
T Consensus 592 ~~eAl~~~~~AL~l~P~---~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 592 PELALNDLTRSLNIAPS---ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 23445555555544432 123445555555556655444444433333333334445566666777777776666665
Q ss_pred HhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHH
Q psy6893 808 LCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAIL 846 (988)
Q Consensus 808 L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~ 846 (988)
..... |. .....+.++.+|...|+.......+..++.
T Consensus 669 AL~l~-P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 669 AHKGL-PD-DPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHhC-CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44332 21 123345667777777776655555555554
No 119
>KOG3598|consensus
Probab=36.88 E-value=3.4 Score=54.00 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=18.1
Q ss_pred cccchhhhhhcHHHHHHHHcCCCChhHHHHHHHH
Q psy6893 810 EEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHD 843 (988)
Q Consensus 810 ~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~ 843 (988)
++.+...+++++=.-==||++ -+-|+++-|-.
T Consensus 1631 a~d~S~~s~Gs~eenkraYmn--L~KKl~KElge 1662 (2220)
T KOG3598|consen 1631 ADDDSMDSYGSIEENKRAYMN--LMKKLRKELGE 1662 (2220)
T ss_pred cccccccCCCchhhhHHHHHH--HHHHHHHHHHh
Confidence 445566677777666667765 33344444433
No 120
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=35.47 E-value=98 Score=39.51 Aligned_cols=91 Identities=18% Similarity=0.206 Sum_probs=66.0
Q ss_pred HHHHhcccCCCCCCCCCccchhHHHHHhhhccCCCCchhHHHHHHhhhhcCCCchhHHHHHHHHHHHhh-ccCCC--hh-
Q psy6893 296 LAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEDDAVTGEAAGIAMGLVL-LGSKS--ES- 371 (988)
Q Consensus 296 l~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~~~~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~~-~Gs~~--~~- 371 (988)
...+.+-++. .++|+++=||-.+|.+.- . ...++++..++..++.+++-+|..|++|++=.| ++-.. +.
T Consensus 94 vNti~kDl~d----~N~~iR~~AlR~ls~l~~--~-el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g 166 (757)
T COG5096 94 VNTIQKDLQD----PNEEIRGFALRTLSLLRV--K-ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELG 166 (757)
T ss_pred HHHHHhhccC----CCHHHHHHHHHHHHhcCh--H-HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhccc
Confidence 3445555554 589999999999998843 3 377888888888888889999999999999888 44321 12
Q ss_pred HHHHHHHhhhhcchHHHHHHHH
Q psy6893 372 AIQDMVAYAKETQHEKILRGLA 393 (988)
Q Consensus 372 ~~~~L~~~~~dt~~E~~~r~la 393 (988)
.+..+..++.|++..++..|++
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~ 188 (757)
T COG5096 167 LIDILKELVADSDPIVIANALA 188 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHH
Confidence 3455666667787777655543
No 121
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=35.46 E-value=1.3e+02 Score=28.55 Aligned_cols=71 Identities=23% Similarity=0.212 Sum_probs=41.7
Q ss_pred chhhHHHHHhhhccCCchH-------HHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCC------CHHHHHHHHHhhccC
Q psy6893 676 YEGGGLYALGLIHANHGAV-------INDYLLGQVKDATNEMVRHGGCLGLGLAAMGSA------RDDIYEQLKFNLYQD 742 (988)
Q Consensus 676 ~k~GAL~AlGlI~ag~~~~-------~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~------~~dv~~~L~~~l~~D 742 (988)
.|-|+|.||.-+.-+.+.. ++.-++..+ +.++.-||+-||.+|.-+.--.. -.++++.|..++ .|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~-~D 79 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCF-DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLS-AD 79 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence 4778888888876665543 333334333 33456789999999976542222 234455555544 56
Q ss_pred ChhhHH
Q psy6893 743 DAVTGE 748 (988)
Q Consensus 743 ~~~~~e 748 (988)
......
T Consensus 80 ~d~~Vr 85 (97)
T PF12755_consen 80 PDENVR 85 (97)
T ss_pred CchhHH
Confidence 554444
No 122
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=35.23 E-value=7e+02 Score=28.97 Aligned_cols=129 Identities=18% Similarity=0.107 Sum_probs=65.0
Q ss_pred HHHHHhhccCCChhHHHHHHHhhhhcch----------HHHHHHHHHHH-HHHhcCCh---hhHHHHHHHH---hhcchh
Q psy6893 358 IAMGLVLLGSKSESAIQDMVAYAKETQH----------EKILRGLAVGI-SFIMYGQL---ENADDLVRDL---CEEKDA 420 (988)
Q Consensus 358 lglGL~~~Gs~~~~~~~~L~~~~~dt~~----------E~~~r~lalgl-~~v~~g~~---e~a~~li~~L---~~~~d~ 420 (988)
+-+||=.+|-.+.+..+.++.-+.+.-+ +...--||+-+ ++=+.|+. -.-..++..| +++..+
T Consensus 53 VllaLrL~~~~~~~~e~~ll~~Lk~~~~~~~~~s~~~~~~t~GqLALyiLAL~asC~dp~~~~~~~Lvs~Lk~~le~e~~ 132 (326)
T PF01122_consen 53 VLLALRLSGIHNLEKEQLLLQQLKEDYQQRLLSSLSSSDPTSGQLALYILALRASCRDPRFFKGHNLVSQLKRKLEEEKE 132 (326)
T ss_dssp HHHHHHTSSEE-CHHHHHHHHHHHHHHHHHHSTSSSGTC--HHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeeecCcccHHHHHHHHHHHHHHHHHHHhhccccCCCCccHHHHHHHHHhhhccCCcccccccHHHHHHHHHHhhhh
Confidence 3345556677776666555554422111 11222333333 23245542 1222344444 233222
Q ss_pred h--hhccchhHHHHHhhhhhhhccccchhhHHhhccchhHHHHHhhhccCCCHHHHHHHHHHhccC----CCchhhHHHH
Q psy6893 421 I--LRRSGMYTIAMAYCVSYLYFDLFSDLTYRIVKNRSGMYTIAMAYCGSGSNVATKRLLHVAVSD----VNDDVRREAV 494 (988)
Q Consensus 421 ~--lr~~~~~~~~l~l~Lgll~~g~~~e~~l~~~~~~~~~~~~~~AYaGTGN~~~Iq~LLhi~~s~----~~~dvrr~AV 494 (988)
. -+.|.+.+-|.-++||.|.+ |-.-+.-+.-.|.+|++....+ ..-.|=-.|+
T Consensus 133 ~i~~h~g~P~TnyYq~sL~vLAL---------------------Cv~~~~~~~~~v~kL~~~~~~~~~~~~~~sVDT~Am 191 (326)
T PF01122_consen 133 NIGNHKGHPLTNYYQYSLGVLAL---------------------CVHNKRVSLSVVAKLLKAENHNFYHGSQFSVDTGAM 191 (326)
T ss_dssp HHTSSSTS-SSGHHHHHHHHHHH---------------------HHTTHHHHHHHHHHHHHHHHSSTSS-STCHHHHHHH
T ss_pred hcccCCCCCCCcccchHHHHHHH---------------------HccCCCcCHHHHHHHHHHHHhhcccCCCCCccHHHH
Confidence 2 25556777778888876532 3344444678899999977654 1223445677
Q ss_pred HHHHHHhhcCccc
Q psy6893 495 TALGFILFRTLFY 507 (988)
Q Consensus 495 ~~lg~I~~~~~~~ 507 (988)
-+|+|.++.+-..
T Consensus 192 A~LALtCv~~~~~ 204 (326)
T PF01122_consen 192 AVLALTCVKNSNP 204 (326)
T ss_dssp HHHHHHHHHTTTS
T ss_pred HHHHHHHHhccCc
Confidence 7778888766433
No 123
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=35.13 E-value=5.2e+02 Score=26.61 Aligned_cols=76 Identities=11% Similarity=0.041 Sum_probs=48.5
Q ss_pred HHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHHhhhhhhhhhhhccCCCchHHHHHhhhhhccCCChhh
Q psy6893 803 DLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAILRRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDV 882 (988)
Q Consensus 803 ~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~~~lG~alia~g~~~tgn~~air~ll~~~~sd~~~~v 882 (988)
.++.....++++..|+.++.... .|+-. . ..-+...+.+ ..+..|.+..|
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~-~~~~~---------------------------~-~~~~~~l~~~-~~~~~d~~~~V 157 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLL-RLIKK---------------------------E-TDFDLLLEII-ERLLHDEEYFV 157 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH-HHHHh---------------------------c-ccHHHHHHHH-HHhCCCHHHHH
Confidence 57777777888888888655442 22220 0 1222333333 33345668899
Q ss_pred hhhHHhhhhhhhhhhhhhhHhhhhhh
Q psy6893 883 RREAVTALGFILFRKKRTRRKKKKGA 908 (988)
Q Consensus 883 rraa~~alg~i~~~npeq~pk~~k~~ 908 (988)
+.++..+|..++..+|+.+-+..++-
T Consensus 158 qkav~w~L~~~~~~~~~~v~~~l~~~ 183 (197)
T cd06561 158 QKAVGWALREYGKKDPERVIAFLEKN 183 (197)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 99999999999999888776655433
No 124
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=34.19 E-value=82 Score=28.96 Aligned_cols=63 Identities=19% Similarity=0.136 Sum_probs=37.0
Q ss_pred HHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch--------HHHHHHHHHhhhcCchhhHHHHHHhhHhhhc
Q psy6893 657 ALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--------VINDYLLGQVKDATNEMVRHGGCLGLGLAAM 724 (988)
Q Consensus 657 ~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--------~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~ 724 (988)
++..|-+++. .++.+.+..++.+++.+..+... ..+..|+..+.+ +++.++..++-.|+-..-
T Consensus 8 ~i~~l~~~l~----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 8 GLPALVSLLS----SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAA 78 (120)
T ss_pred ChHHHHHHHH----cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHcc
Confidence 4445555554 33467888888888888665321 134455554433 455666667766665533
No 125
>KOG3598|consensus
Probab=33.69 E-value=4 Score=53.44 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=13.6
Q ss_pred HHhhccCCChhHHHHHHHhhhh
Q psy6893 361 GLVLLGSKSESAIQDMVAYAKE 382 (988)
Q Consensus 361 GL~~~Gs~~~~~~~~L~~~~~d 382 (988)
=-|-.|-.+.+-|.++-.|..+
T Consensus 1085 M~vc~gh~d~dRiNdiAn~cae 1106 (2220)
T KOG3598|consen 1085 MEVCQGHRDFDRINDIANYCAE 1106 (2220)
T ss_pred HHHHhcCCChhhHHHHHHHHHH
Confidence 3345666777777776666554
No 126
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=33.58 E-value=7.2e+02 Score=27.78 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=14.2
Q ss_pred hhhhcccccCChHHHHHHHhhcCC
Q psy6893 643 TASLGVIHRGHETEALAHMQSYLP 666 (988)
Q Consensus 643 ~ASLG~Ih~gn~~~~l~~L~~yL~ 666 (988)
.-++.....|+.++++..+.+.+.
T Consensus 48 ~~a~~~~~~g~~~~A~~~~~~~l~ 71 (355)
T cd05804 48 VEALSAWIAGDLPKALALLEQLLD 71 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455556666666666666664
No 127
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=33.41 E-value=1.1e+03 Score=31.70 Aligned_cols=155 Identities=10% Similarity=-0.022 Sum_probs=88.6
Q ss_pred ccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCC
Q psy6893 648 VIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSA 727 (988)
Q Consensus 648 ~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~ 727 (988)
....|+.+++...+...+.. ..++...++.++......|...+++..+..-+...++ ..+...+|.++.-.+
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l----~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~----~~a~~~LA~~l~~lG 623 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQR----GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS----ANAYVARATIYRQRH 623 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHCC
Confidence 46689999999999888752 1122233333333232335656676666655544443 234566676766666
Q ss_pred CHH-HHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHH
Q psy6893 728 RDD-IYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVR 806 (988)
Q Consensus 728 ~~d-v~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~ 806 (988)
+.+ ....+...+..++... .+-..+|.+....++.+-.-.+++-+.+-..+...-...+|..+...|+.+++...++
T Consensus 624 ~~deA~~~l~~AL~l~Pd~~--~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 624 NVPAAVSDLRAALELEPNNS--NYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 643 5566666665454443 2344555555555565544444443333333333345567777788899988888877
Q ss_pred HHhccc
Q psy6893 807 DLCEEK 812 (988)
Q Consensus 807 ~L~~~~ 812 (988)
......
T Consensus 702 ~Al~l~ 707 (987)
T PRK09782 702 LVIDDI 707 (987)
T ss_pred HHHhcC
Confidence 766543
No 128
>KOG1058|consensus
Probab=33.20 E-value=2.1e+02 Score=36.44 Aligned_cols=66 Identities=9% Similarity=0.213 Sum_probs=44.1
Q ss_pred CCChhHHHHH----HHhhhhcchHHHHHHHHHHHHHHhcCChhhHHHH-HHHHhhcchhhhhccchhHHHH
Q psy6893 367 SKSESAIQDM----VAYAKETQHEKILRGLAVGISFIMYGQLENADDL-VRDLCEEKDAILRRSGMYTIAM 432 (988)
Q Consensus 367 s~~~~~~~~L----~~~~~dt~~E~~~r~lalgl~~v~~g~~e~a~~l-i~~L~~~~d~~lr~~~~~~~~l 432 (988)
+.++.+++.| ++++...+.++....+.+.|-++.+.|-+.+-.+ -..++...+......+.|.+.|
T Consensus 309 ~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlL 379 (948)
T KOG1058|consen 309 ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLL 379 (948)
T ss_pred hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHH
Confidence 6677776554 6667777789999999999999999996555544 4445554444333444555444
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=32.50 E-value=3.6e+02 Score=26.77 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=18.5
Q ss_pred hhhhhhhhhhccCCCchHHHHHhhhhhccCCCh
Q psy6893 848 RSGMYTIAMAYCGSGSNVATKRLLHVAVSDVND 880 (988)
Q Consensus 848 ~lG~alia~g~~~tgn~~air~ll~~~~sd~~~ 880 (988)
.+|.++..+|+. +.|+..+.+.+.-+|++
T Consensus 97 ~lg~~l~~~g~~----~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 97 QTGVCLKMMGEP----GLAREAFQTAIKMSYAD 125 (144)
T ss_pred HHHHHHHHcCCH----HHHHHHHHHHHHhCCCC
Confidence 466777777776 56666666665555543
No 130
>KOG2507|consensus
Probab=31.84 E-value=83 Score=37.22 Aligned_cols=16 Identities=13% Similarity=0.165 Sum_probs=6.9
Q ss_pred cCCCCHHHHHHHHHhh
Q psy6893 724 MGSARDDIYEQLKFNL 739 (988)
Q Consensus 724 ~Gs~~~dv~~~L~~~l 739 (988)
+||-...=|..|.|++
T Consensus 61 ags~aa~qFs~IYp~v 76 (506)
T KOG2507|consen 61 AGSVAATQFSAIYPYV 76 (506)
T ss_pred cCchhhhhhhhhcccc
Confidence 3444444444444443
No 131
>KOG1078|consensus
Probab=30.67 E-value=1.3e+03 Score=29.91 Aligned_cols=103 Identities=20% Similarity=0.181 Sum_probs=55.0
Q ss_pred hHHHHHHHhhhhcc--hHHHHHHHHHHHHHHhcC----ChhhHHH--HHHHHhhcchhhhhccchhHHHHHhhhhhhhcc
Q psy6893 371 SAIQDMVAYAKETQ--HEKILRGLAVGISFIMYG----QLENADD--LVRDLCEEKDAILRRSGMYTIAMAYCVSYLYFD 442 (988)
Q Consensus 371 ~~~~~L~~~~~dt~--~E~~~r~lalgl~~v~~g----~~e~a~~--li~~L~~~~d~~lr~~~~~~~~l~l~Lgll~~g 442 (988)
.++++.. ...++. ..+++..|+-=+=++..| .-|+.+. -+..|...+|+.+|.- .+ ++
T Consensus 22 ~vlqe~r-~fnespvn~r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~--vY----l~------- 87 (865)
T KOG1078|consen 22 TVLQEAR-TFNESPVNPRKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRM--VY----LA------- 87 (865)
T ss_pred HHHHHHH-hhcCCCCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHH--HH----HH-------
Confidence 3455555 345555 345777777666666666 2344444 2455667788888872 10 01
Q ss_pred ccchhhHHhhccchhHHHHHhhhccCCCHHHHHHHHHHhccCCCchhhHHHHHHHHHHhhcCc
Q psy6893 443 LFSDLTYRIVKNRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRTL 505 (988)
Q Consensus 443 ~~~e~~l~~~~~~~~~~~~~~AYaGTGN~~~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~~~~~ 505 (988)
+..|+.. +-++..|-.-|..=....+|.+|..|+-+|--|.-++.
T Consensus 88 -----------------Ikels~i-sedviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m 132 (865)
T KOG1078|consen 88 -----------------IKELSKI-SEDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTM 132 (865)
T ss_pred -----------------Hhhcccc-chhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcch
Confidence 1222222 22344333333333556666777777777777765553
No 132
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=30.59 E-value=4.8e+02 Score=27.51 Aligned_cols=23 Identities=13% Similarity=-0.078 Sum_probs=11.4
Q ss_pred hHHHHHhhhhhccCCChhhhhhH
Q psy6893 864 NVATKRLLHVAVSDVNDDVRREA 886 (988)
Q Consensus 864 ~~air~ll~~~~sd~~~~vrraa 886 (988)
+.|+..+-.++..+|.++-|+.+
T Consensus 161 ~~Ai~~~~~aL~l~~~~~~r~~~ 183 (198)
T PRK10370 161 AQAIELWQKVLDLNSPRVNRTQL 183 (198)
T ss_pred HHHHHHHHHHHhhCCCCccHHHH
Confidence 44555555555555544444433
No 133
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=30.38 E-value=36 Score=41.67 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=27.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhcchhhhhccchhHHHHHhhhh
Q psy6893 393 AVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCVS 437 (988)
Q Consensus 393 algl~~v~~g~~e~a~~li~~L~~~~d~~lr~~~~~~~~l~l~Lg 437 (988)
..|-.++-.|+.+.|+.+...|+.+..... .|.+.+..++|
T Consensus 43 ~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~----~Yy~~L~~~~g 83 (517)
T PF12569_consen 43 KRAELLLKLGRKEEAEKIYRELIDRNPDNY----DYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHh
Confidence 445566777888899998888888754332 34555555554
No 134
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=29.45 E-value=58 Score=23.13 Aligned_cols=26 Identities=19% Similarity=0.448 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhc
Q psy6893 73 YVNMAQCWIYLDDPRSVANLLGKLVA 98 (988)
Q Consensus 73 y~~~~qc~~~Lnd~~~va~il~~L~~ 98 (988)
++.+.+|+..++|.+...+.|.+++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 57899999999999999999999975
No 135
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=29.26 E-value=1.1e+02 Score=25.59 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhcCCCC
Q psy6893 73 YVNMAQCWIYLDDPRSVANLLGKLVAGSAD 102 (988)
Q Consensus 73 y~~~~qc~~~Lnd~~~va~il~~L~~~~~~ 102 (988)
++.+.+|++..++.+.+.++|.+++....+
T Consensus 28 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 28 RLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 678999999999999999999999875443
No 136
>KOG2153|consensus
Probab=28.94 E-value=5.6e+02 Score=32.31 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=9.5
Q ss_pred CCCchHHHHHhhhhh
Q psy6893 860 GSGSNVATKRLLHVA 874 (988)
Q Consensus 860 ~tgn~~air~ll~~~ 874 (988)
|.++-.++|.+.+++
T Consensus 358 g~~sl~~Vr~i~~ll 372 (704)
T KOG2153|consen 358 GSGSLAIVRIINSLL 372 (704)
T ss_pred cchhHHHHHHHHHHh
Confidence 455666677776665
No 137
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=28.56 E-value=3.4e+02 Score=24.77 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=17.9
Q ss_pred HHHHHHHHhccCCCchhhHHHHHHHHHH
Q psy6893 473 ATKRLLHVAVSDVNDDVRREAVTALGFI 500 (988)
Q Consensus 473 ~Iq~LLhi~~s~~~~dvrr~AV~~lg~I 500 (988)
.+..|++++.+. +.++|+.|...|+-+
T Consensus 92 ~l~~l~~~l~~~-~~~~~~~a~~~l~~l 118 (120)
T cd00020 92 GVPKLVNLLDSS-NEDIQKNATGALSNL 118 (120)
T ss_pred ChHHHHHHHhcC-CHHHHHHHHHHHHHh
Confidence 466677766443 667888887776654
No 138
>KOG1060|consensus
Probab=28.52 E-value=1.4e+03 Score=29.69 Aligned_cols=235 Identities=13% Similarity=0.096 Sum_probs=122.9
Q ss_pred HHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHH---HHHHHHHhh--hcCchhhHHHHHHhh---Hhh-----
Q psy6893 656 EALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVI---NDYLLGQVK--DATNEMVRHGGCLGL---GLA----- 722 (988)
Q Consensus 656 ~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~---~~~Ll~~l~--~s~~~~ir~gA~LGL---Gla----- 722 (988)
+-..+++..|. ..++-+-|.|++|+--|++.+-+.+ --.|++.+. +...+++.++-..-- ++.
T Consensus 180 qL~e~I~~LLa----D~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~ 255 (968)
T KOG1060|consen 180 QLEEVIKKLLA----DRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVV 255 (968)
T ss_pred HHHHHHHHHhc----CCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcccc
Confidence 56677787774 5578999999999888777653211 111222221 111222222221110 000
Q ss_pred ------------------hcC---CCCHHH---HHHHHHhhccCC-hhhHHHHHHHhhcccCCC--CCHHHHHHHHHHHH
Q psy6893 723 ------------------AMG---SARDDI---YEQLKFNLYQDD-AVTGEAAGIAMGLVLLGS--KSESAIQDMVAYAK 775 (988)
Q Consensus 723 ------------------~~G---s~~~dv---~~~L~~~l~~D~-~~~~e~AalAlGLI~vGs--~n~d~i~~ll~~~~ 775 (988)
++- ..++|+ +....|++++.+ ++.+..|.+= -.+.+ .+..+++.+++++.
T Consensus 256 ~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~---y~lAP~~~~~~i~kaLvrLLr 332 (968)
T KOG1060|consen 256 DSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLF---YHLAPKNQVTKIAKALVRLLR 332 (968)
T ss_pred ccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHH---HhhCCHHHHHHHHHHHHHHHh
Confidence 011 225554 456678887644 3444332221 11222 23457888999886
Q ss_pred hcccchhhhHHHHHHHHHhcCCchhHHHHHHHHh-cccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHH--------
Q psy6893 776 ETQHEKILRGLAVGISFIMYGQLENADDLVRDLC-EEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAIL-------- 846 (988)
Q Consensus 776 etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~-~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~-------- 846 (988)
+.+.-++ .+.-.|+.+.+.++.-.++.+...- ...||..-..-=+-+---.+..+|+-.|.|-+..-.-
T Consensus 333 s~~~vqy--vvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa 410 (968)
T KOG1060|consen 333 SNREVQY--VVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAA 410 (968)
T ss_pred cCCcchh--hhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHH
Confidence 5543222 2333466677777777777776543 2234432111000011123455677666666654331
Q ss_pred ---hhhhhhhhhhhccCCCchHHHHHhhhhhccCCChhhhhhHHhhhhhhhhhhhhhhHh
Q psy6893 847 ---RRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRKKRTRRK 903 (988)
Q Consensus 847 ---~~lG~alia~g~~~tgn~~air~ll~~~~sd~~~~vrraa~~alg~i~~~npeq~pk 903 (988)
.-+|.|....+.. ...+..-|++++.+. +..|--+++..+-.++..+|.+--+
T Consensus 411 ~aV~AiGrCA~~~~sv---~~tCL~gLv~Llssh-de~Vv~eaV~vIk~Llq~~p~~h~~ 466 (968)
T KOG1060|consen 411 AAVKAIGRCASRIGSV---TDTCLNGLVQLLSSH-DELVVAEAVVVIKRLLQKDPAEHLE 466 (968)
T ss_pred HHHHHHHHHHHhhCch---hhHHHHHHHHHHhcc-cchhHHHHHHHHHHHHhhChHHHHH
Confidence 2355555444442 356677788887775 7777777777777777777775533
No 139
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=28.37 E-value=3.9e+02 Score=28.25 Aligned_cols=31 Identities=23% Similarity=0.169 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhccCCCchhhHHHHHHHHHHh
Q psy6893 471 NVATKRLLHVAVSDVNDDVRREAVTALGFIL 501 (988)
Q Consensus 471 ~~~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~ 501 (988)
...+.+.+.-+.+|.+.+||..|-..+.-+.
T Consensus 175 ~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 175 LKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 3667888888999999999998877776664
No 140
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=28.11 E-value=42 Score=35.84 Aligned_cols=8 Identities=50% Similarity=0.754 Sum_probs=3.7
Q ss_pred HHHHhhHh
Q psy6893 714 GGCLGLGL 721 (988)
Q Consensus 714 gA~LGLGl 721 (988)
++++|||+
T Consensus 66 h~V~~LGl 73 (196)
T smart00786 66 HIVIGLGL 73 (196)
T ss_pred HHHHHHHH
Confidence 34444444
No 141
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=27.97 E-value=3.3e+02 Score=28.24 Aligned_cols=42 Identities=14% Similarity=0.055 Sum_probs=25.2
Q ss_pred hhhhhhhhhccCCCchHHHHHhhhhhccCC-ChhhhhhHHhhhh
Q psy6893 849 SGMYTIAMAYCGSGSNVATKRLLHVAVSDV-NDDVRREAVTALG 891 (988)
Q Consensus 849 lG~alia~g~~~tgn~~air~ll~~~~sd~-~~~vrraa~~alg 891 (988)
.|.+++.+|+. .....+.+.-++.+...| ...+|..|-..|.
T Consensus 109 ag~c~L~lG~~-~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~ 151 (157)
T PRK15363 109 AAECYLACDNV-CYAIKALKAVVRICGEVSEHQILRQRAEKMLQ 151 (157)
T ss_pred HHHHHHHcCCH-HHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence 57777888887 666666666666663333 3445544444443
No 142
>KOG2874|consensus
Probab=27.96 E-value=65 Score=36.04 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=23.6
Q ss_pred CCChhHHHHHHHHHHHhhhhhhhhhhhccCCCchH
Q psy6893 831 SGSNVATKRLLHDAILRRSGMYTIAMAYCGSGSNV 865 (988)
Q Consensus 831 tGnvl~iq~lL~~~~~~~lG~alia~g~~~tgn~~ 865 (988)
.|..|+..++|.+|+-.+=|-..-+||.= .|-..
T Consensus 167 ng~TLKAlelLT~CYilVqG~TVsaiGpf-kGlke 200 (356)
T KOG2874|consen 167 NGSTLKALELLTNCYILVQGNTVSAIGPF-KGLKE 200 (356)
T ss_pred CchhHHHHHHHhhcEEEeeCcEEEeecCc-chHHH
Confidence 46778888999999876666666666664 44333
No 143
>KOG2023|consensus
Probab=27.89 E-value=2.8e+02 Score=34.98 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=38.8
Q ss_pred CccchhHHHHHhhhccCCCCchhHHHHHHhhhhcCCCchhHHHHHHHHHHHhhcc
Q psy6893 312 GYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEDDAVTGEAAGIAMGLVLLG 366 (988)
Q Consensus 312 ~y~~~GaL~alGli~~g~~~~~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~~~G 366 (988)
.+.+.-+.-||+....=-+....+.++-+|++++.++....+||+++|+|.+-=|
T Consensus 369 WNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEG 423 (885)
T KOG2023|consen 369 WNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEG 423 (885)
T ss_pred ccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHH
Confidence 4566666777776644344445677777888888888888999999998854433
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=27.82 E-value=4.6e+02 Score=25.77 Aligned_cols=117 Identities=15% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHhhcccCCCCCHHHHHH-HHHHHHhcccchhhhHHHHHHHHHhc--CCchhHHHHHHHHhccc-chhhhhhcHHHHH
Q psy6893 750 AGIAMGLVLLGSKSESAIQD-MVAYAKETQHEKILRGLAVGISFIMY--GQLENADDLVRDLCEEK-DAILRRSGMYTIA 825 (988)
Q Consensus 750 AalAlGLI~vGs~n~d~i~~-ll~~~~etq~e~i~R~lalgLgLi~~--Gr~e~a~~li~~L~~~~-dp~~r~~~~~~ls 825 (988)
..+...+..+-.++.+-+.. +-.+..+...........+.+|-+.+ |..+.+...++.+.... ||..+...-+-++
T Consensus 13 ~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 13 ALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Q ss_pred HHHcCCCChhHHHHHHHHHHH--------hhhhhhhhhhhccCCCchHHHHHh
Q psy6893 826 MAYCGSGSNVATKRLLHDAIL--------RRSGMYTIAMAYCGSGSNVATKRL 870 (988)
Q Consensus 826 lAyaGtGnvl~iq~lL~~~~~--------~~lG~alia~g~~~tgn~~air~l 870 (988)
.-+...|+.......|...-. .+.|.+++..|+. ..|+..+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~----~~A~~~y 141 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDY----DEARAAY 141 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCH----HHHHHHH
No 145
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=27.41 E-value=3.7e+02 Score=25.48 Aligned_cols=61 Identities=11% Similarity=-0.043 Sum_probs=30.7
Q ss_pred HHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHHhc
Q psy6893 750 AGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCE 810 (988)
Q Consensus 750 AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~~ 810 (988)
+-+.+|..++..++.+-...+++.+.+.......-...+|..+.-.|+.+++...++....
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666665555555544333222222223344444455667666666665543
No 146
>KOG1248|consensus
Probab=27.39 E-value=7.4e+02 Score=33.34 Aligned_cols=163 Identities=11% Similarity=0.133 Sum_probs=74.7
Q ss_pred HhhhcCCCCHHHHHHHHHhhccCChhhHHHHHHH-hhcccCCCC--CHHHHHH-HHHHHHh-cccchhhhHHHHHHHHHh
Q psy6893 720 GLAAMGSARDDIYEQLKFNLYQDDAVTGEAAGIA-MGLVLLGSK--SESAIQD-MVAYAKE-TQHEKILRGLAVGISFIM 794 (988)
Q Consensus 720 Gla~~Gs~~~dv~~~L~~~l~~D~~~~~e~AalA-lGLI~vGs~--n~d~i~~-ll~~~~e-tq~e~i~R~lalgLgLi~ 794 (988)
|-.+.+++.++++..|.+-+. +...+....++. +-.|+=+.+ +.+.+.. +-..+.. +.++...|-.+..+ |++
T Consensus 687 ~~~~~~q~i~~I~n~L~ds~q-s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~l-L~~ 764 (1176)
T KOG1248|consen 687 GEGLVEQRIDDIFNSLLDSFQ-SSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFAL-LVF 764 (1176)
T ss_pred hhhHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHH-HHH
Confidence 555678888899999988773 333333444442 333333322 1122222 1122211 44455556665555 555
Q ss_pred cCCchhHHHHHHHHhcccch-hhhhhc-HHHHHHHHcCCCChhHHHHHHHHHHHhhhhhhhhhhhccCCCchHHHHHhhh
Q psy6893 795 YGQLENADDLVRDLCEEKDA-ILRRSG-MYTIAMAYCGSGSNVATKRLLHDAILRRSGMYTIAMAYCGSGSNVATKRLLH 872 (988)
Q Consensus 795 ~Gr~e~a~~li~~L~~~~dp-~~r~~~-~~~lslAyaGtGnvl~iq~lL~~~~~~~lG~alia~g~~~tgn~~air~ll~ 872 (988)
.|+ +....+ --++| ..+.-. +-.++-+.+| -.+++.+.. .+++.-+.+-..+..++..+.+++.
T Consensus 765 i~~---i~~~~d---~g~e~~~~~lnefl~~Isagl~g-------d~~~~~as~-Ivai~~il~e~~~~ld~~~l~~li~ 830 (1176)
T KOG1248|consen 765 IGA---IQSSLD---DGNEPASAILNEFLSIISAGLVG-------DSTRVVASD-IVAITHILQEFKNILDDETLEKLIS 830 (1176)
T ss_pred HHH---HHhhhc---ccccchHHHHHHHHHHHHhhhcc-------cHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHH
Confidence 553 111111 01122 111111 1122222333 223334443 5666666666665667777666666
Q ss_pred hh----ccCCChhhhhhHHhhhhhhhhhhhh
Q psy6893 873 VA----VSDVNDDVRREAVTALGFILFRKKR 899 (988)
Q Consensus 873 ~~----~sd~~~~vrraa~~alg~i~~~npe 899 (988)
.+ .+ .+.+++++|+-.+.-....-|+
T Consensus 831 ~V~~~L~s-~sreI~kaAI~fikvlv~~~pe 860 (1176)
T KOG1248|consen 831 MVCLYLAS-NSREIAKAAIGFIKVLVYKFPE 860 (1176)
T ss_pred HHHHHHhc-CCHHHHHHHHHHHHHHHHcCCH
Confidence 43 33 4678888775443333333444
No 147
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=27.12 E-value=7.6e+02 Score=26.02 Aligned_cols=26 Identities=23% Similarity=0.101 Sum_probs=14.6
Q ss_pred HHHHHHhhhcCchhhHHHHHHhhHhh
Q psy6893 697 DYLLGQVKDATNEMVRHGGCLGLGLA 722 (988)
Q Consensus 697 ~~Ll~~l~~s~~~~ir~gA~LGLGla 722 (988)
..++....++++..+|..++.-|..+
T Consensus 133 ~~~l~~~~~~Kn~~vR~~~~~~l~~~ 158 (228)
T PF12348_consen 133 LEILSQGLKSKNPQVREECAEWLAII 158 (228)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 33344444666778888777666554
No 148
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=26.79 E-value=72 Score=40.20 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=14.3
Q ss_pred hhhhhhHHhhhhhhhhhhhhh
Q psy6893 880 DDVRREAVTALGFILFRKKRT 900 (988)
Q Consensus 880 ~~vrraa~~alg~i~~~npeq 900 (988)
|.+|..--..+|.++--.|+.
T Consensus 521 D~iRd~~L~~~Gi~l~D~~~g 541 (651)
T PTZ00399 521 DKLRDEWLPNLGIRIEDKPDG 541 (651)
T ss_pred HHHHHHHHHHCCCEEEEcCCC
Confidence 457765567788888766654
No 149
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=26.06 E-value=88 Score=28.28 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHhccCCCchhhHHHHHHHHHHhh
Q psy6893 470 SNVATKRLLHVAVSDVNDDVRREAVTALGFILF 502 (988)
Q Consensus 470 N~~~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~~ 502 (988)
+...|..+++++.+.+.-.+|..|+..||+|+-
T Consensus 26 ~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~ 58 (73)
T PF14668_consen 26 ESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS 58 (73)
T ss_pred hcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC
Confidence 457899999999888888899999999999985
No 150
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=25.56 E-value=2.6e+02 Score=31.25 Aligned_cols=82 Identities=23% Similarity=0.400 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHhhhhcccchhhhhhHhHH--------------------------
Q psy6893 907 GAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKK-------------------------- 960 (988)
Q Consensus 907 ~~e~~~~kk~kkk~kk~k~kkk~kek~kKkkk~e~k~kkk~kekkkkkkkkkkk-------------------------- 960 (988)
..+.+..+.+.++++++.--+++=++--+++.+..++.+..+..+....+..+.
T Consensus 112 ~~~~E~~k~~~e~e~Rk~lA~~~y~eWl~~K~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~q~W~~ 191 (264)
T PF13904_consen 112 KQKEEREKQEEEKEERKRLAEEKYQEWLQRKEEQERKQREQKHSKEEEKKASKSLSSQAAKPEREVSQEEAKQRYQEWER 191 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhhHHHHHHHhhhhhhhhC
Q psy6893 961 KKKKKKKKKKKKKKEAEKMKKKTEEAEK 988 (988)
Q Consensus 961 kkkkkkkkkkkk~k~~~~~~~~~~e~ek 988 (988)
+|.+..++++++.++++..+..++++++
T Consensus 192 kK~~e~~~~r~~~~~~~~~~~~e~~eRk 219 (264)
T PF13904_consen 192 KKKEEQQQKREEEREKEQQKQQEEQERK 219 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 151
>KOG1517|consensus
Probab=25.53 E-value=1.9e+02 Score=38.21 Aligned_cols=88 Identities=20% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcCC-------hhhHHHHHHHHhhcchhhhhccchhHHHHHhhhhhhhccccchhhHHhhccchhH
Q psy6893 386 EKILRGLAVGISFIMYGQ-------LENADDLVRDLCEEKDAILRRSGMYTIAMAYCVSYLYFDLFSDLTYRIVKNRSGM 458 (988)
Q Consensus 386 E~~~r~lalgl~~v~~g~-------~e~a~~li~~L~~~~d~~lr~~~~~~~~l~l~Lgll~~g~~~e~~l~~~~~~~~~ 458 (988)
.+.++++.++.+-=+|-. ...+...++.|-.+.+|.+|. ++++|||.|+ .
T Consensus 573 qrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQ------W~~icLG~LW-----------------~ 629 (1387)
T KOG1517|consen 573 QRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQ------WLCICLGRLW-----------------E 629 (1387)
T ss_pred HHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHH------HHHHHHHHHh-----------------h
Q ss_pred HHHHhhhccCCCHHHHHHHHHHhccCCCchhhHHHHHHHH
Q psy6893 459 YTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALG 498 (988)
Q Consensus 459 ~~~~~AYaGTGN~~~Iq~LLhi~~s~~~~dvrr~AV~~lg 498 (988)
--..--+.|.-++ |..+|+-.+ +|..+.||.+||.+||
T Consensus 630 d~~~Arw~G~r~~-AhekL~~~L-sD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 630 DYDEARWSGRRDN-AHEKLILLL-SDPVPEVRAAAVFALG 667 (1387)
T ss_pred hcchhhhcccccc-HHHHHHHHh-cCccHHHHHHHHHHHH
No 152
>KOG1241|consensus
Probab=25.00 E-value=1.6e+03 Score=29.09 Aligned_cols=165 Identities=18% Similarity=0.136 Sum_probs=91.6
Q ss_pred ccchhHHHHHhhhccCCCCchhHHHHHHhhhhcCCCchhHHHHHHHHHHHhhccCCChhH-------HHHHHHhhhhcch
Q psy6893 313 YYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEDDAVTGEAAGIAMGLVLLGSKSESA-------IQDMVAYAKETQH 385 (988)
Q Consensus 313 y~~~GaL~alGli~~g~~~~~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~~~Gs~~~~~-------~~~L~~~~~dt~~ 385 (988)
..-||+++.+ ....+++....+.+.-+.+++.+++.--+++|++++|.++-|-.-... +..++....|...
T Consensus 343 ~kAAg~CL~l--~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl 420 (859)
T KOG1241|consen 343 AKAAGVCLML--FAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSL 420 (859)
T ss_pred HHHHHHHHHH--HHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchh
Confidence 3456666655 344445557778889999999999999999999999999999875332 1223333332221
Q ss_pred HHHHHHHHHHHHHHhcC------ChhhHHHHHHHHhhcchhhhhccchhHHHHHhhhhhhhccccchhhHHhhccchhHH
Q psy6893 386 EKILRGLAVGISFIMYG------QLENADDLVRDLCEEKDAILRRSGMYTIAMAYCVSYLYFDLFSDLTYRIVKNRSGMY 459 (988)
Q Consensus 386 E~~~r~lalgl~~v~~g------~~e~a~~li~~L~~~~d~~lr~~~~~~~~l~l~Lgll~~g~~~e~~l~~~~~~~~~~ 459 (988)
- ..+..+..++-+.-. +++.-..+++.|++--...-|... ..|-++ -.+
T Consensus 421 ~-VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~------N~CWAf------------------~~L 475 (859)
T KOG1241|consen 421 W-VKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVAS------NVCWAF------------------ISL 475 (859)
T ss_pred h-hcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHH------HHHHHH------------------HHH
Confidence 1 223444444444333 233333344444331111111100 001000 112
Q ss_pred HHHhhhccCCC----------HHHHHHHHHHhcc-C-CCchhhHHHHHHHHHHhhcC
Q psy6893 460 TIAMAYCGSGS----------NVATKRLLHVAVS-D-VNDDVRREAVTALGFILFRT 504 (988)
Q Consensus 460 ~~~~AYaGTGN----------~~~Iq~LLhi~~s-~-~~~dvrr~AV~~lg~I~~~~ 504 (988)
+++|..++..| ...|..||+..-- | .+...|.+|.-+|+-+--.-
T Consensus 476 aea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~s 532 (859)
T KOG1241|consen 476 AEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNS 532 (859)
T ss_pred HHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcC
Confidence 55566666655 3568999986542 2 23357889999999887433
No 153
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=24.79 E-value=1.8e+02 Score=37.34 Aligned_cols=76 Identities=17% Similarity=0.106 Sum_probs=49.1
Q ss_pred CCCCccchhhHHHHHhhhccCCch--H-HHHHHHHHhhhcCchhhHHHHHHhhHhhh-cCCCC--HH-HHHHHHHhhccC
Q psy6893 670 GPTSGYYEGGGLYALGLIHANHGA--V-INDYLLGQVKDATNEMVRHGGCLGLGLAA-MGSAR--DD-IYEQLKFNLYQD 742 (988)
Q Consensus 670 ~s~~~~~k~GAL~AlGlI~ag~~~--~-~~~~Ll~~l~~s~~~~ir~gA~LGLGla~-~Gs~~--~d-v~~~L~~~l~~D 742 (988)
+..++++|+-|+-.++.+ +.+. + ++..+. ++.++++..||.-|+++++-.| .+... +. ..+.+..++ .|
T Consensus 102 ~d~N~~iR~~AlR~ls~l--~~~el~~~~~~~ik-~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~-~D 177 (757)
T COG5096 102 QDPNEEIRGFALRTLSLL--RVKELLGNIIDPIK-KLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELV-AD 177 (757)
T ss_pred cCCCHHHHHHHHHHHHhc--ChHHHHHHHHHHHH-HHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHh-hC
Confidence 366899999999999999 4433 2 334443 4446677899999999999988 44332 11 344455555 45
Q ss_pred ChhhHHH
Q psy6893 743 DAVTGEA 749 (988)
Q Consensus 743 ~~~~~e~ 749 (988)
+...+-+
T Consensus 178 ~dP~Vi~ 184 (757)
T COG5096 178 SDPIVIA 184 (757)
T ss_pred CCchHHH
Confidence 5443333
No 154
>PRK12370 invasion protein regulator; Provisional
Probab=24.70 E-value=1.4e+03 Score=28.13 Aligned_cols=123 Identities=12% Similarity=-0.045 Sum_probs=61.0
Q ss_pred hHhhhcCCCC-HHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHH-HHHHHHHHHHhcccchhhhHHHHHHHHHhcC
Q psy6893 719 LGLAAMGSAR-DDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSES-AIQDMVAYAKETQHEKILRGLAVGISFIMYG 796 (988)
Q Consensus 719 LGla~~Gs~~-~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d-~i~~ll~~~~etq~e~i~R~lalgLgLi~~G 796 (988)
+|.++...++ ++....+...+..++... .+-+.+|.+..-.|+.+ ++..+-+.+.-..+..... ...+..+...|
T Consensus 344 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~--~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~-~~~~~~~~~~g 420 (553)
T PRK12370 344 LGLINTIHSEYIVGSLLFKQANLLSPISA--DIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG-ITKLWITYYHT 420 (553)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH-HHHHHHHHhcc
Confidence 4445444444 445555555554343322 23345566555666655 4444433332222221122 22232355578
Q ss_pred CchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHH
Q psy6893 797 QLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAI 845 (988)
Q Consensus 797 r~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~ 845 (988)
+.+++....+.+....+|.. ....+.+++.|...|+.......+....
T Consensus 421 ~~eeA~~~~~~~l~~~~p~~-~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 421 GIDDAIRLGDELRSQHLQDN-PILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred CHHHHHHHHHHHHHhccccC-HHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 87777777766543322221 1123456777878888877777665544
No 155
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=23.53 E-value=1.7e+02 Score=31.28 Aligned_cols=6 Identities=0% Similarity=-0.241 Sum_probs=2.3
Q ss_pred hhhhhH
Q psy6893 897 KKRTRR 902 (988)
Q Consensus 897 npeq~p 902 (988)
+|+.+.
T Consensus 74 dpd~v~ 79 (190)
T PF06936_consen 74 DPDVVV 79 (190)
T ss_dssp SHHHHH
T ss_pred ChhHHH
Confidence 333333
No 156
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=23.43 E-value=3.1e+02 Score=28.74 Aligned_cols=147 Identities=10% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHH
Q psy6893 729 DDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDL 808 (988)
Q Consensus 729 ~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L 808 (988)
++.++.+..+..++.....-.|..-++... -..+.+.+..+-.++..-..-.+.-.++-.+---+.-..+.+..++...
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~-~~~~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~~~~~~~~~~W 128 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDKRR-KKLTEEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKHPEALELLEKW 128 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHCG-GG--HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHHGGHHHHHHHH
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHHHh-hhhhHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred hcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHHhhhhhhhhhhhccCCCchHHHHHhhhhhccCCChhhhhhHHh
Q psy6893 809 CEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAILRRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVT 888 (988)
Q Consensus 809 ~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~~~lG~alia~g~~~tgn~~air~ll~~~~sd~~~~vrraa~~ 888 (988)
..++++..|+.++... +.|+. ......+-..+.....|++..||.++..
T Consensus 129 ~~s~~~w~rR~~~v~~-~~~~~------------------------------~~~~~~~l~~~~~~~~d~~~~vq~ai~w 177 (213)
T PF08713_consen 129 AKSDNEWVRRAAIVML-LRYIR------------------------------KEDFDELLEIIEALLKDEEYYVQKAIGW 177 (213)
T ss_dssp HHCSSHHHHHHHHHCT-TTHGG------------------------------GCHHHHHHHHHHHCTTGS-HHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHH-HHHHH------------------------------hcCHHHHHHHHHHHcCCchHHHHHHHHH
Q ss_pred hhhhhhhhhhhhhHhhhhh
Q psy6893 889 ALGFILFRKKRTRRKKKKG 907 (988)
Q Consensus 889 alg~i~~~npeq~pk~~k~ 907 (988)
+|--++..+|+...+-...
T Consensus 178 ~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 178 ALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHH
No 157
>KOG1058|consensus
Probab=23.23 E-value=1.4e+03 Score=29.61 Aligned_cols=230 Identities=17% Similarity=0.134 Sum_probs=117.9
Q ss_pred HHHHHHHHhcCCchHHHHHhhhhhhhhhhhhhHHHHHHHHhhcCCCchhhhcchhHHHHhhcccchhhhhhhhccccc--
Q psy6893 574 DLHLQFLIRSNKTDMLILKNTKESIRVSICHTATIIANAFMHSGTTSDQFLRDNLEWLARATNWAKLTATASLGVIHR-- 651 (988)
Q Consensus 574 ~l~l~fL~~~n~tD~~il~~~kds~r~s~~h~A~~~ana~~naGt~~D~flr~~~~wl~k~~~w~kfsA~ASLG~Ih~-- 651 (988)
..-++||-+-..+ .+|+.+.-++|..+-|- ..|.|.| |.-.++-|++
T Consensus 117 G~TLRFLckLkE~--ELlepl~p~IracleHr---------------hsYVRrN--------------AilaifsIyk~~ 165 (948)
T KOG1058|consen 117 GSTLRFLCKLKEP--ELLEPLMPSIRACLEHR---------------HSYVRRN--------------AILAIFSIYKNF 165 (948)
T ss_pred chhhhhhhhcCcH--HHhhhhHHHHHHHHhCc---------------chhhhhh--------------hheeehhHHhhh
Confidence 3456788777655 56788888888776663 2334432 2333333333
Q ss_pred -CChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcC--chhhHHHHHHhhHhhhc-CCC
Q psy6893 652 -GHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDAT--NEMVRHGGCLGLGLAAM-GSA 727 (988)
Q Consensus 652 -gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~--~~~ir~gA~LGLGla~~-Gs~ 727 (988)
|=.-++-+++..||-. ..|+.-+.-|++.|-.+.+ ..+..||.+-+.+-+ ++..+.-.+.=+=-..- ..+
T Consensus 166 ~~L~pDapeLi~~fL~~---e~DpsCkRNAFi~L~~~D~---ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~ 239 (948)
T KOG1058|consen 166 EHLIPDAPELIESFLLT---EQDPSCKRNAFLMLFTTDP---ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA 239 (948)
T ss_pred hhhcCChHHHHHHHHHh---ccCchhHHHHHHHHHhcCH---HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH
Confidence 1233577888888863 4578889999987765522 227888876543222 12222111111111111 111
Q ss_pred C-HHHHHHHHHhhc-cCChhhHHHHHHHhhcccCCCCCHHHH----HHHHHHHHhcccchhhhHHHHHHHHHhcC--Cch
Q psy6893 728 R-DDIYEQLKFNLY-QDDAVTGEAAGIAMGLVLLGSKSESAI----QDMVAYAKETQHEKILRGLAVGISFIMYG--QLE 799 (988)
Q Consensus 728 ~-~dv~~~L~~~l~-~D~~~~~e~AalAlGLI~vGs~n~d~i----~~ll~~~~etq~e~i~R~lalgLgLi~~G--r~e 799 (988)
. ..-+..+..+|. +++++.-|+ |+.++ .=|.+++++ +.+++++.... ++-.+.+.+-. |.-+. ...
T Consensus 240 ~~~~~i~~i~~lL~stssaV~fEa---a~tlv-~lS~~p~alk~Aa~~~i~l~~kes-dnnvklIvldr-l~~l~~~~~~ 313 (948)
T KOG1058|consen 240 EKARYIRCIYNLLSSTSSAVIFEA---AGTLV-TLSNDPTALKAAASTYIDLLVKES-DNNVKLIVLDR-LSELKALHEK 313 (948)
T ss_pred HhhHHHHHHHHHHhcCCchhhhhh---cceEE-EccCCHHHHHHHHHHHHHHHHhcc-CcchhhhhHHH-HHHHhhhhHH
Confidence 1 112344555554 344555554 33333 334556654 45666654332 22222222211 11111 111
Q ss_pred -hHHHHHHHHhcccchhhhh-hcHHHHHHHHcCCCChhHHHHHHHHHHH
Q psy6893 800 -NADDLVRDLCEEKDAILRR-SGMYTIAMAYCGSGSNVATKRLLHDAIL 846 (988)
Q Consensus 800 -~a~~li~~L~~~~dp~~r~-~~~~~lslAyaGtGnvl~iq~lL~~~~~ 846 (988)
--+-+++.|+....|.+-. .-.+.++|....+-|+..+..+|..-+-
T Consensus 314 il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~ 362 (948)
T KOG1058|consen 314 ILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVM 362 (948)
T ss_pred HHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHH
Confidence 1234455555544443322 2368899999999999999998887653
No 158
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=23.20 E-value=46 Score=35.52 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=9.7
Q ss_pred hHHHHHHhhHhhhcCC
Q psy6893 711 VRHGGCLGLGLAAMGS 726 (988)
Q Consensus 711 ir~gA~LGLGla~~Gs 726 (988)
|.-..|+.||+.++-.
T Consensus 12 Il~~tsF~lGvlf~~~ 27 (196)
T smart00786 12 IIGSTSFFLGILFANF 27 (196)
T ss_pred hhhhHHHHHHHHHhcC
Confidence 4445677777766543
No 159
>KOG3252|consensus
Probab=23.15 E-value=69 Score=33.95 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=24.3
Q ss_pred cChHHHH--HHHHHHHHHHhcCCcccHHHHHHHHHH
Q psy6893 49 QSRSFRA--QILRTLVRLYHSLSVPDYVNMAQCWIY 82 (988)
Q Consensus 49 ~~~~fR~--~vL~lL~~ly~~~~~pDy~~~~qc~~~ 82 (988)
.||+|=+ -+-++|++.+..+|.||| .+|+|++-
T Consensus 55 fnP~~~nt~itaqILlKaL~~lP~tDF-~l~kcli~ 89 (217)
T KOG3252|consen 55 FNPEFFNTTITAQILLKALTNLPHTDF-TLAKCLID 89 (217)
T ss_pred cCHHHhhhHHHHHHHHHHHhcCCCcch-hHHHHhcC
Confidence 3455432 356788888899999997 89999873
No 160
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=22.30 E-value=8.7e+02 Score=25.46 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=19.8
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHhccC
Q psy6893 458 MYTIAMAYCGSGSNVATKRLLHVAVSD 484 (988)
Q Consensus 458 ~~~~~~AYaGTGN~~~Iq~LLhi~~s~ 484 (988)
.+..+.+|..+|+...-...+..+...
T Consensus 206 ~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 206 LARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 447788888899888777777766543
No 161
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=21.85 E-value=1.3e+02 Score=23.15 Aligned_cols=29 Identities=24% Similarity=0.270 Sum_probs=23.4
Q ss_pred HHHHHHHHHhccCCCchhhHHHHHHHHHHh
Q psy6893 472 VATKRLLHVAVSDVNDDVRREAVTALGFIL 501 (988)
Q Consensus 472 ~~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~ 501 (988)
-.|..|++++. +.++++|+.|+-+|+-|+
T Consensus 12 g~i~~Lv~ll~-~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLK-SPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTT-SSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHc-CCCHHHHHHHHHHHHHHh
Confidence 35778888776 778899999999998764
No 162
>KOG0915|consensus
Probab=21.82 E-value=2.4e+03 Score=29.92 Aligned_cols=228 Identities=17% Similarity=0.226 Sum_probs=112.9
Q ss_pred HHHhhhhcCCCchhHHHHHHHHH-HHh-hccCCChhHH------HHHHHhhhhcchHHHHHHHHHHHHHHh-cC----Ch
Q psy6893 338 LGQVKDATNEDDAVTGEAAGIAM-GLV-LLGSKSESAI------QDMVAYAKETQHEKILRGLAVGISFIM-YG----QL 404 (988)
Q Consensus 338 ~~lL~~~~~~d~~~~~~aA~lgl-GL~-~~Gs~~~~~~------~~L~~~~~dt~~E~~~r~lalgl~~v~-~g----~~ 404 (988)
...|-....+.++-.|.|+-+=| .++ |+|+..+-+. +....++.| +.|.+.---|-||++|+ .| ++
T Consensus 820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd-~dEf~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSD-NDEFSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcc-cHHHHHHHHhcCceEEEecCCchhHH
Confidence 33444445566777777665432 222 5676554433 333333333 34556666677777773 23 35
Q ss_pred hhHHHHHHHHhhcchhhhhccchhHHHHHhhhhhhhccccchhhHHh--hccchhHHHHHhhhccCC-CHHHHHHHHHHh
Q psy6893 405 ENADDLVRDLCEEKDAILRRSGMYTIAMAYCVSYLYFDLFSDLTYRI--VKNRSGMYTIAMAYCGSG-SNVATKRLLHVA 481 (988)
Q Consensus 405 e~a~~li~~L~~~~d~~lr~~~~~~~~l~l~Lgll~~g~~~e~~l~~--~~~~~~~~~~~~AYaGTG-N~~~Iq~LLhi~ 481 (988)
+.++.++++|++-+-... ...-|+ .++ | .++.-+|| +-.-=++|+.++
T Consensus 899 ~LV~sL~~tl~~Gkr~~~-----------------------~vs~eTelFq~--G----~Lg~Tp~Gg~isTYKELc~LA 949 (1702)
T KOG0915|consen 899 SLVDSLVNTLTGGKRKAI-----------------------KVSEETELFQE--G----TLGKTPDGGKISTYKELCNLA 949 (1702)
T ss_pred HHHHHHHHHHhccccccc-----------------------eeccchhcccC--C----cCCCCCCCCcchHHHHHHHHH
Confidence 677777777766321100 000011 000 0 12233444 444445555544
Q ss_pred ccCCCch----------------hhHHHHHHHHHHhhcC-----c-----------cccccccCCCCchhHHhhccchhh
Q psy6893 482 VSDVNDD----------------VRREAVTALGFILFRT-----L-----------FYVAPACTRSPWPGVISLLDDPMI 529 (988)
Q Consensus 482 ~s~~~~d----------------vrr~AV~~lg~I~~~~-----~-----------~~~g~~~~~~~~p~ai~lL~~~~~ 529 (988)
++=..+| .|+-|+.|+|-|+-+- | .||-+- .+|..|+.=++..++
T Consensus 950 Sdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~---~~Vq~aM~sIW~~Li 1026 (1702)
T KOG0915|consen 950 SDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPD---KKVQDAMTSIWNALI 1026 (1702)
T ss_pred hhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCc---HHHHHHHHHHHHHhc
Confidence 3333333 4788999999998732 1 134333 467777777776555
Q ss_pred hhhHhhHHH-hhhhcccCCCCchhhHHHHH----HHHHhhhccCCchhHHHHHHHHHhcCCchHHHHHhhhhhhhhh
Q psy6893 530 ELKEFSLKK-LNDIVDDFWPENEKEKQLQA----RITKLSKILSGEVSIDLHLQFLIRSNKTDMLILKNTKESIRVS 601 (988)
Q Consensus 530 ~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~----~~~~l~~Il~g~~~~~l~l~fL~~~n~tD~~il~~~kds~r~s 601 (988)
++.-..++. +++|.++-.+.... ..|. +--.|.+++.|....+.+-. +-.-=-+-+..++-+|+++|..
T Consensus 1027 ~D~k~~vd~y~neIl~eLL~~lt~--kewRVReasclAL~dLl~g~~~~~~~e~-lpelw~~~fRvmDDIKEsVR~a 1100 (1702)
T KOG0915|consen 1027 TDSKKVVDEYLNEILDELLVNLTS--KEWRVREASCLALADLLQGRPFDQVKEK-LPELWEAAFRVMDDIKESVREA 1100 (1702)
T ss_pred cChHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHcCCChHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 544444443 55555543222111 1121 12347778888444332211 1111113356677888999865
No 163
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=21.78 E-value=4.8e+02 Score=33.75 Aligned_cols=13 Identities=0% Similarity=-0.036 Sum_probs=5.4
Q ss_pred CCchHHHHHhhhh
Q psy6893 861 SGSNVATKRLLHV 873 (988)
Q Consensus 861 tgn~~air~ll~~ 873 (988)
..+-..|.+.+.+
T Consensus 482 ~S~a~~iA~~~Gl 494 (771)
T TIGR01069 482 ESYAFEIAQRYGI 494 (771)
T ss_pred CcHHHHHHHHhCc
Confidence 3343344444433
No 164
>KOG2072|consensus
Probab=21.49 E-value=3.1e+02 Score=35.28 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=17.9
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHhhc
Q psy6893 72 DYVNMAQCWIYLDDPRSVANLLGKLVA 98 (988)
Q Consensus 72 Dy~~~~qc~~~Lnd~~~va~il~~L~~ 98 (988)
.|-++|| .+.+..-+.|..=|..|..
T Consensus 73 QYk~~~Q-qvnv~SlE~VvrhflklAe 98 (988)
T KOG2072|consen 73 QYKNLCQ-QVNVKSLENVVRHFLKLAE 98 (988)
T ss_pred HHHHHHH-HhchHhHHHHHHHHHHHHH
Confidence 3888888 6666666667666666643
No 165
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=21.46 E-value=5.5e+02 Score=28.10 Aligned_cols=84 Identities=23% Similarity=0.283 Sum_probs=0.0
Q ss_pred hhhhHhhhhhhHHHHHHHHHHHH--------------------HHHHHhhhhHHHHHhhhhHHHHhhhhcc-----cchh
Q psy6893 898 KRTRRKKKKGAEKIRKKKKKKKE--------------------AEKMRKKKGAEKMKKKKKDAEKMKKKGA-----EKIG 952 (988)
Q Consensus 898 peq~pk~~k~~e~~~~kk~kkk~--------------------kk~k~kkk~kek~kKkkk~e~k~kkk~k-----ekkk 952 (988)
|.......+.....++++..+.. +.+..+++.+..+.|.+++.--++-.+. +-..
T Consensus 98 ~~sl~em~k~~~~~~~~k~~k~~~Rek~Ia~nM~Kmpk~i~e~~~~~~kk~~~~~~~k~rkerl~eEvre~fGy~vDprd 177 (217)
T PF10147_consen 98 PPSLQEMLKELREKKEEKEEKRLAREKEIAKNMAKMPKWIAEWKAKIAKKEAKAQAAKERKERLIEEVREHFGYKVDPRD 177 (217)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCC
Q ss_pred hhhhHhHHHHHHHHHhhhhhHHHHHHHhh
Q psy6893 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981 (988)
Q Consensus 953 kkkkkkkkkkkkkkkkkkkk~k~~~~~~~ 981 (988)
.+=++--.+++++.||++|..+++.++++
T Consensus 178 prF~eml~~kEkeeKKk~K~aKkk~k~ek 206 (217)
T PF10147_consen 178 PRFQEMLQEKEKEEKKKKKEAKKKEKEEK 206 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 166
>KOG1156|consensus
Probab=21.45 E-value=1.7e+02 Score=36.65 Aligned_cols=31 Identities=29% Similarity=0.263 Sum_probs=22.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhcchhhhhc
Q psy6893 394 VGISFIMYGQLENADDLVRDLCEEKDAILRR 424 (988)
Q Consensus 394 lgl~~v~~g~~e~a~~li~~L~~~~d~~lr~ 424 (988)
-+-..+-.|+.|.+..+...|+.+....++|
T Consensus 225 ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Y 255 (700)
T KOG1156|consen 225 KADLLMKLGQLEEAVKVYRRLLERNPDNLDY 255 (700)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHhhCchhHHH
Confidence 3445556789999999999998876555554
No 167
>PF11208 DUF2992: Protein of unknown function (DUF2992); InterPro: IPR016787 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.09 E-value=1.2e+02 Score=30.50 Aligned_cols=14 Identities=7% Similarity=0.048 Sum_probs=6.8
Q ss_pred hhhhhhhHhhhhhh
Q psy6893 895 FRKKRTRRKKKKGA 908 (988)
Q Consensus 895 ~~npeq~pk~~k~~ 908 (988)
..||....+...++
T Consensus 64 ~~NPKR~qR~a~ke 77 (132)
T PF11208_consen 64 KINPKRLQREAKKE 77 (132)
T ss_pred CCChhHHHHHHHHh
Confidence 44555555444433
No 168
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=20.76 E-value=1.6e+02 Score=21.10 Aligned_cols=25 Identities=28% Similarity=0.419 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhccCCChhHHHHHHHhhh
Q psy6893 353 GEAAGIAMGLVLLGSKSESAIQDMVAYAK 381 (988)
Q Consensus 353 ~~aA~lglGL~~~Gs~~~~~~~~L~~~~~ 381 (988)
+.+|+.+|| .+|. +++++.|+..+.
T Consensus 2 R~~Aa~aLg--~igd--~~ai~~L~~~L~ 26 (27)
T PF03130_consen 2 RRAAARALG--QIGD--PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHG--GG-S--HHHHHHHHHHHH
T ss_pred HHHHHHHHH--HcCC--HHHHHHHHHHhc
Confidence 445555555 3333 555555555443
No 169
>KOG0526|consensus
Probab=20.36 E-value=32 Score=41.53 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=4.6
Q ss_pred chhHHHHHHHH
Q psy6893 798 LENADDLVRDL 808 (988)
Q Consensus 798 ~e~a~~li~~L 808 (988)
.+.+|....++
T Consensus 436 ~~~~D~~~~~~ 446 (615)
T KOG0526|consen 436 EDEIDEYLATL 446 (615)
T ss_pred ccccchHHhhh
Confidence 44444444433
No 170
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=20.14 E-value=1.5e+02 Score=21.23 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhc
Q psy6893 73 YVNMAQCWIYLDDPRSVANLLGKLVA 98 (988)
Q Consensus 73 y~~~~qc~~~Lnd~~~va~il~~L~~ 98 (988)
|+.+.+|+..++|.+...+.|.+.++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 78899999999999999999988864
Done!