Query psy6893
Match_columns 988
No_of_seqs 455 out of 1025
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 21:11:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6893.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6893hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ady_A RPN2, 26S proteasome re 100.0 5.1E-94 1.7E-98 879.6 28.6 533 2-766 150-726 (963)
2 4ady_A RPN2, 26S proteasome re 100.0 7.2E-66 2.5E-70 631.2 30.4 339 560-900 294-681 (963)
3 1oyz_A Hypothetical protein YI 98.3 1.9E-05 6.4E-10 84.2 19.1 140 656-814 128-267 (280)
4 1b3u_A Protein (protein phosph 98.2 0.00018 6.1E-09 83.7 25.3 132 639-775 341-486 (588)
5 1oyz_A Hypothetical protein YI 98.2 2.8E-05 9.4E-10 82.9 16.3 215 638-904 39-257 (280)
6 1b3u_A Protein (protein phosph 98.1 0.00027 9.1E-09 82.2 23.0 173 295-502 11-193 (588)
7 3ltm_A Alpha-REP4; protein eng 98.0 0.0001 3.6E-09 75.0 15.8 189 656-899 19-207 (211)
8 2vgl_B AP-2 complex subunit be 97.9 0.0048 1.6E-07 73.5 29.1 101 637-740 297-400 (591)
9 3ltj_A Alpharep-4; protein eng 97.8 0.00037 1.3E-08 70.3 15.6 183 656-893 14-196 (201)
10 1w63_A Adapter-related protein 97.7 0.093 3.2E-06 62.9 37.3 111 360-505 59-174 (618)
11 2z6g_A B-catenin; FULL-length, 97.7 0.0046 1.6E-07 76.3 26.2 117 655-775 398-540 (780)
12 2jdq_A Importin alpha-1 subuni 97.6 0.0053 1.8E-07 68.9 22.8 96 657-757 277-388 (450)
13 2vgl_B AP-2 complex subunit be 97.5 0.068 2.3E-06 63.6 32.5 81 279-363 105-187 (591)
14 4b8j_A Importin subunit alpha- 97.3 0.0052 1.8E-07 71.3 18.9 144 333-505 75-235 (528)
15 1wa5_B Importin alpha subunit; 97.3 0.0086 2.9E-07 69.7 20.4 141 334-504 89-246 (530)
16 3ltm_A Alpha-REP4; protein eng 97.2 0.0027 9.2E-08 64.4 13.2 169 637-830 34-202 (211)
17 3ltj_A Alpharep-4; protein eng 97.2 0.0028 9.6E-08 63.8 13.1 161 638-821 30-190 (201)
18 1jdh_A Beta-catenin; beta-cate 97.2 0.036 1.2E-06 63.6 23.3 103 655-761 265-387 (529)
19 3now_A UNC-45 protein, SD10334 97.1 0.23 7.8E-06 61.6 30.9 203 310-545 216-451 (810)
20 2z6h_A Catenin beta-1, beta-ca 97.0 0.39 1.3E-05 57.4 31.5 116 656-775 263-404 (644)
21 4fdd_A Transportin-1; heat rep 97.0 0.16 5.5E-06 62.6 28.0 53 310-366 102-158 (852)
22 1u6g_C TIP120 protein, CAND1; 96.7 1.1 3.9E-05 57.4 34.2 230 640-900 797-1040(1230)
23 4b8j_A Importin subunit alpha- 96.6 0.017 5.8E-07 67.0 14.9 36 866-901 329-364 (528)
24 1u6g_C TIP120 protein, CAND1; 96.6 1.5 5.1E-05 56.3 33.9 71 294-368 48-118 (1230)
25 2jdq_A Importin alpha-1 subuni 96.5 0.015 5.1E-07 65.2 13.1 35 866-901 277-311 (450)
26 1qgr_A Protein (importin beta 96.4 2.2 7.4E-05 51.9 31.7 88 311-399 341-435 (876)
27 3now_A UNC-45 protein, SD10334 96.3 0.14 4.7E-06 63.5 20.7 198 239-504 220-452 (810)
28 4hxt_A De novo protein OR329; 96.3 0.099 3.4E-06 53.4 16.6 209 657-900 3-246 (252)
29 3ul1_B Importin subunit alpha- 96.1 0.3 1E-05 56.9 21.0 213 657-900 144-393 (510)
30 1w63_A Adapter-related protein 96.0 0.96 3.3E-05 54.1 25.7 86 278-370 125-211 (618)
31 3ul1_B Importin subunit alpha- 96.0 1.5 5.1E-05 50.9 26.4 54 473-527 144-197 (510)
32 2z6g_A B-catenin; FULL-length, 96.0 0.26 9.1E-06 60.6 20.8 216 657-899 277-522 (780)
33 4db8_A Armadillo-repeat protei 95.8 0.087 3E-06 54.3 13.5 197 671-894 23-250 (252)
34 4fdd_A Transportin-1; heat rep 95.7 3.7 0.00013 50.4 29.5 210 656-897 215-473 (852)
35 1wa5_B Importin alpha subunit; 95.7 0.051 1.7E-06 63.2 12.2 35 866-901 342-376 (530)
36 3tpo_A Importin subunit alpha- 95.5 0.44 1.5E-05 55.6 19.4 129 655-791 250-402 (529)
37 1te4_A Conserved protein MTH18 95.4 0.0077 2.6E-07 57.0 3.5 111 345-500 21-131 (131)
38 2xpi_A Anaphase-promoting comp 95.3 5.4 0.00018 45.6 31.4 217 648-879 349-582 (597)
39 1te4_A Conserved protein MTH18 95.3 0.04 1.4E-06 52.1 7.8 103 638-756 28-130 (131)
40 2z6h_A Catenin beta-1, beta-ca 95.2 1.9 6.6E-05 51.3 24.2 33 866-898 353-385 (644)
41 1w3b_A UDP-N-acetylglucosamine 95.2 4.3 0.00015 43.8 28.0 87 786-878 275-370 (388)
42 4db6_A Armadillo repeat protei 95.2 0.11 3.7E-06 52.1 11.2 179 288-501 6-208 (210)
43 4hxt_A De novo protein OR329; 95.1 0.39 1.4E-05 48.8 15.5 177 294-505 44-244 (252)
44 4db6_A Armadillo repeat protei 94.8 0.29 9.8E-06 49.0 13.1 29 865-894 180-208 (210)
45 2vgl_A Adaptor protein complex 94.4 12 0.0004 44.9 31.2 47 471-526 189-235 (621)
46 2bpt_A Importin beta-1 subunit 94.2 12 0.0004 45.3 28.0 133 657-795 370-529 (861)
47 1w3b_A UDP-N-acetylglucosamine 94.2 7.5 0.00026 41.9 25.8 182 651-845 182-366 (388)
48 3tpo_A Importin subunit alpha- 93.9 0.65 2.2E-05 54.2 15.3 204 695-903 120-372 (529)
49 1jdh_A Beta-catenin; beta-cate 93.6 1.9 6.7E-05 49.0 18.3 37 862-899 263-299 (529)
50 4db8_A Armadillo-repeat protei 92.7 0.71 2.4E-05 47.4 11.7 136 657-800 55-214 (252)
51 2bpt_A Importin beta-1 subunit 92.3 25 0.00085 42.4 30.4 56 313-368 346-401 (861)
52 2xpi_A Anaphase-promoting comp 91.9 20 0.0007 40.7 28.1 206 287-526 95-330 (597)
53 3l6x_A Catenin delta-1; cateni 91.6 10 0.00035 45.2 21.3 73 695-767 309-392 (584)
54 1qgr_A Protein (importin beta 90.9 34 0.0012 41.3 32.6 111 640-756 346-476 (876)
55 1xm9_A Plakophilin 1; armadill 89.8 31 0.0011 39.2 22.7 78 650-732 278-368 (457)
56 3nmw_A APC variant protein; AR 89.4 8.8 0.0003 42.7 17.2 210 673-904 45-301 (354)
57 3hym_B Cell division cycle pro 89.2 11 0.00039 38.6 17.0 216 648-878 66-301 (330)
58 3hym_B Cell division cycle pro 89.2 14 0.00048 38.0 17.7 183 649-844 101-296 (330)
59 3opb_A SWI5-dependent HO expre 88.8 34 0.0012 42.1 22.9 30 460-489 355-393 (778)
60 3nmz_A APC variant protein; pr 87.6 19 0.00064 41.6 18.9 37 864-901 420-456 (458)
61 3nmz_A APC variant protein; pr 87.3 10 0.00035 43.8 16.4 38 866-904 380-417 (458)
62 3u4t_A TPR repeat-containing p 86.1 15 0.0005 36.9 15.3 85 649-739 48-135 (272)
63 3l9t_A Putative uncharacterize 86.0 4.3 0.00015 43.0 11.1 133 696-834 72-210 (240)
64 1xnf_A Lipoprotein NLPI; TPR, 85.2 21 0.0007 35.7 15.8 217 650-881 17-249 (275)
65 2y4t_A DNAJ homolog subfamily 85.2 35 0.0012 37.1 18.8 22 823-844 216-237 (450)
66 4eqf_A PEX5-related protein; a 85.1 10 0.00036 40.2 14.2 211 649-874 76-308 (365)
67 1fch_A Peroxisomal targeting s 85.0 16 0.00056 38.4 15.6 210 649-874 75-312 (368)
68 3mkr_A Coatomer subunit epsilo 84.9 15 0.0005 39.0 15.1 26 849-878 206-231 (291)
69 2gw1_A Mitochondrial precursor 84.8 51 0.0017 36.2 30.3 215 649-879 248-481 (514)
70 1fch_A Peroxisomal targeting s 84.5 6.7 0.00023 41.5 12.2 237 630-878 17-282 (368)
71 2qk2_A LP04448P; mini spindles 84.4 7.3 0.00025 40.0 12.1 161 310-502 27-205 (242)
72 3cv0_A Peroxisome targeting si 83.9 34 0.0012 34.9 17.1 215 649-878 32-271 (327)
73 3l9t_A Putative uncharacterize 83.7 8.2 0.00028 40.9 12.0 151 726-908 66-220 (240)
74 1xqr_A HSPBP1 protein; armadil 83.1 7.1 0.00024 42.4 11.8 131 334-503 83-239 (296)
75 3l6x_A Catenin delta-1; cateni 82.7 46 0.0016 39.7 19.4 56 657-716 91-155 (584)
76 2pl2_A Hypothetical conserved 81.7 13 0.00043 37.2 12.4 172 649-834 16-201 (217)
77 3fp2_A TPR repeat-containing p 80.8 45 0.0016 37.0 17.9 185 652-846 216-406 (537)
78 2pl2_A Hypothetical conserved 80.7 12 0.00042 37.3 11.9 157 680-844 7-177 (217)
79 2q7f_A YRRB protein; TPR, prot 79.8 19 0.00063 35.3 12.7 26 849-878 199-224 (243)
80 3l9o_A ATP-dependent RNA helic 79.5 0.37 1.3E-05 61.8 0.0 8 867-874 29-36 (1108)
81 2qk2_A LP04448P; mini spindles 79.1 56 0.0019 33.2 16.5 24 875-898 185-208 (242)
82 2ho1_A Type 4 fimbrial biogene 78.3 47 0.0016 32.7 15.4 152 650-810 49-203 (252)
83 1xm9_A Plakophilin 1; armadill 78.0 73 0.0025 36.1 18.6 79 657-739 45-136 (457)
84 1xqr_A HSPBP1 protein; armadil 77.8 7.6 0.00026 42.2 9.8 100 657-760 82-197 (296)
85 3ieg_A DNAJ homolog subfamily 77.7 67 0.0023 33.0 22.0 122 753-878 159-303 (359)
86 3nmw_A APC variant protein; AR 77.4 45 0.0015 36.9 16.1 37 865-902 305-341 (354)
87 3ro2_A PINS homolog, G-protein 76.9 24 0.00082 35.8 12.9 81 648-730 15-100 (338)
88 2y4t_A DNAJ homolog subfamily 76.7 88 0.003 33.8 25.0 29 388-416 26-54 (450)
89 2vq2_A PILW, putative fimbrial 76.5 54 0.0018 31.2 15.2 153 649-810 19-175 (225)
90 2q7f_A YRRB protein; TPR, prot 76.2 31 0.0011 33.6 13.1 184 649-845 34-220 (243)
91 1lsh_A Lipovitellin (LV-1N, LV 75.6 1.7E+02 0.0059 37.2 22.7 103 633-742 451-558 (1056)
92 3sf4_A G-protein-signaling mod 75.5 17 0.00058 38.6 11.7 57 789-845 234-294 (406)
93 3qky_A Outer membrane assembly 75.1 21 0.00073 36.1 12.0 75 648-725 25-101 (261)
94 2vq2_A PILW, putative fimbrial 74.7 34 0.0012 32.7 12.8 127 678-809 8-140 (225)
95 3qky_A Outer membrane assembly 74.5 12 0.00042 37.9 9.9 47 641-690 53-101 (261)
96 3as5_A MAMA; tetratricopeptide 74.2 20 0.00069 33.0 10.6 52 674-728 4-57 (186)
97 3sf4_A G-protein-signaling mod 74.1 41 0.0014 35.6 14.3 217 649-871 20-291 (406)
98 3mkr_A Coatomer subunit epsilo 73.7 51 0.0018 34.6 14.9 49 796-846 180-228 (291)
99 3vtx_A MAMA; tetratricopeptide 73.5 24 0.0008 33.4 11.1 126 680-810 7-135 (184)
100 4a1s_A PINS, partner of inscut 72.8 73 0.0025 34.0 16.1 195 649-845 59-290 (411)
101 3gyz_A Chaperone protein IPGC; 72.6 29 0.00098 33.2 11.5 36 848-887 109-144 (151)
102 2ho1_A Type 4 fimbrial biogene 72.3 77 0.0026 31.1 16.0 162 677-845 36-202 (252)
103 4a1s_A PINS, partner of inscut 71.8 13 0.00043 40.1 9.7 59 787-845 268-330 (411)
104 3uq3_A Heat shock protein STI1 71.7 76 0.0026 30.9 14.8 202 650-874 17-234 (258)
105 2qk1_A Protein STU2; STU2P, XM 71.0 20 0.00069 37.5 10.7 133 290-426 56-211 (249)
106 4abn_A Tetratricopeptide repea 70.9 78 0.0027 35.8 16.5 61 677-740 101-165 (474)
107 2qk1_A Protein STU2; STU2P, XM 70.6 42 0.0014 35.1 13.1 160 310-501 28-219 (249)
108 3ulq_A Response regulator aspa 70.5 1.2E+02 0.004 32.5 17.7 213 288-502 115-350 (383)
109 3nf1_A KLC 1, kinesin light ch 70.4 59 0.002 32.8 14.0 161 650-810 39-223 (311)
110 2gw1_A Mitochondrial precursor 70.0 1.2E+02 0.0041 33.1 17.4 155 710-874 234-399 (514)
111 3edt_B KLC 2, kinesin light ch 67.9 97 0.0033 30.5 15.9 23 787-809 174-196 (283)
112 3fp2_A TPR repeat-containing p 67.8 1.5E+02 0.0052 32.7 28.9 213 650-878 255-493 (537)
113 3vtx_A MAMA; tetratricopeptide 67.6 66 0.0022 30.2 12.8 154 644-809 9-168 (184)
114 2db0_A 253AA long hypothetical 66.6 59 0.002 33.6 12.2 173 695-904 33-219 (253)
115 1ibr_B P95, importin beta-1 su 65.4 1.6E+02 0.0055 32.1 23.6 33 470-502 126-159 (462)
116 4eqf_A PEX5-related protein; a 64.7 29 0.001 36.7 10.6 198 673-879 60-279 (365)
117 3ro2_A PINS homolog, G-protein 62.8 37 0.0013 34.4 10.6 59 787-845 228-290 (338)
118 3ulq_A Response regulator aspa 60.7 1.8E+02 0.0061 31.0 18.6 185 649-834 114-319 (383)
119 1ibr_B P95, importin beta-1 su 60.3 33 0.0011 37.7 10.3 86 311-397 341-433 (462)
120 3as5_A MAMA; tetratricopeptide 60.3 70 0.0024 29.1 11.2 51 647-703 17-69 (186)
121 3uq3_A Heat shock protein STI1 59.2 1.1E+02 0.0038 29.6 13.1 204 678-901 5-226 (258)
122 3qou_A Protein YBBN; thioredox 55.0 1.1E+02 0.0039 31.6 13.0 144 654-811 102-248 (287)
123 3ieg_A DNAJ homolog subfamily 54.8 1.9E+02 0.0064 29.5 25.2 157 648-810 164-334 (359)
124 2db0_A 253AA long hypothetical 52.5 2.1E+02 0.0073 29.5 13.7 181 676-895 48-246 (253)
125 2vgl_A Adaptor protein complex 52.5 50 0.0017 39.3 10.7 173 614-798 66-271 (621)
126 2fo7_A Synthetic consensus TPR 51.6 84 0.0029 26.6 9.6 15 793-807 80-94 (136)
127 3tjz_B Coatomer subunit gamma; 50.1 1.3E+02 0.0044 33.5 12.8 61 671-734 115-176 (355)
128 3q15_A PSP28, response regulat 49.4 2.7E+02 0.0091 29.6 17.5 211 289-502 114-347 (378)
129 3oc3_A Helicase MOT1, MOT1; re 49.0 70 0.0024 38.2 10.5 62 695-757 175-255 (800)
130 1ouv_A Conserved hypothetical 48.2 1.3E+02 0.0045 30.2 11.9 25 393-417 151-179 (273)
131 3nf1_A KLC 1, kinesin light ch 48.0 2.2E+02 0.0076 28.3 15.1 174 673-846 22-223 (311)
132 4f3v_A ESX-1 secretion system 48.0 62 0.0021 34.9 9.5 122 286-417 112-237 (282)
133 3oc3_A Helicase MOT1, MOT1; re 47.2 60 0.0021 38.8 9.6 37 481-528 307-343 (800)
134 2pzi_A Probable serine/threoni 47.0 62 0.0021 38.7 10.4 155 649-811 402-563 (681)
135 3grl_A General vesicular trans 46.2 1.5E+02 0.005 35.8 13.1 173 693-899 20-199 (651)
136 4gyw_A UDP-N-acetylglucosamine 45.2 1.4E+02 0.0049 36.2 13.3 129 677-810 8-139 (723)
137 3qou_A Protein YBBN; thioredox 44.5 1.1E+02 0.0037 31.8 10.8 124 714-842 118-243 (287)
138 3u4t_A TPR repeat-containing p 43.9 2.4E+02 0.0084 27.6 18.0 219 649-881 14-255 (272)
139 3q15_A PSP28, response regulat 41.5 3.5E+02 0.012 28.7 16.7 185 649-834 112-316 (378)
140 1hz4_A MALT regulatory protein 40.5 3.4E+02 0.012 28.4 14.9 39 650-689 26-64 (373)
141 2xm6_A Protein corresponding t 40.4 4.2E+02 0.014 29.3 25.1 208 266-502 27-266 (490)
142 2b6c_A Hypothetical protein EF 39.9 1.1E+02 0.0039 31.3 9.7 80 795-905 119-198 (220)
143 4abn_A Tetratricopeptide repea 39.6 1.4E+02 0.0046 33.8 11.3 149 649-810 113-286 (474)
144 3tjz_B Coatomer subunit gamma; 38.5 1.1E+02 0.0037 34.1 9.9 57 847-904 119-177 (355)
145 2yhc_A BAMD, UPF0169 lipoprote 38.0 1.3E+02 0.0045 29.6 9.7 73 648-723 14-88 (225)
146 2xev_A YBGF; tetratricopeptide 35.3 2.1E+02 0.0071 24.6 9.7 57 753-809 7-66 (129)
147 4i17_A Hypothetical protein; T 35.3 2.8E+02 0.0096 26.7 11.6 114 650-771 19-140 (228)
148 2vsy_A XCC0866; transferase, g 33.0 3.3E+02 0.011 30.9 13.3 148 652-810 3-156 (568)
149 4gyw_A UDP-N-acetylglucosamine 32.8 2.2E+02 0.0075 34.5 12.1 148 651-809 22-172 (723)
150 2vgx_A Chaperone SYCD; alterna 32.4 2E+02 0.0069 26.5 9.5 59 751-809 24-82 (148)
151 2xcb_A PCRH, regulatory protei 32.4 1.9E+02 0.0065 26.0 9.2 94 715-810 20-114 (142)
152 1ouv_A Conserved hypothetical 31.9 3.9E+02 0.013 26.5 20.0 170 651-843 55-247 (273)
153 3u3w_A Transcriptional activat 31.8 4.2E+02 0.014 27.0 12.8 127 288-416 87-224 (293)
154 4f3v_A ESX-1 secretion system 31.5 93 0.0032 33.5 7.7 100 750-879 137-240 (282)
155 3cv0_A Peroxisome targeting si 31.3 4.1E+02 0.014 26.5 13.5 93 751-845 175-267 (327)
156 3urz_A Uncharacterized protein 31.3 2.8E+02 0.0096 26.9 10.8 28 849-880 163-190 (208)
157 3edt_B KLC 2, kinesin light ch 31.1 3.7E+02 0.013 26.0 13.8 104 313-417 40-156 (283)
158 1hxi_A PEX5, peroxisome target 30.8 1.5E+02 0.0052 26.3 8.1 25 785-809 54-78 (121)
159 1hz4_A MALT regulatory protein 30.4 4.9E+02 0.017 27.1 16.7 195 286-484 24-244 (373)
160 1xnf_A Lipoprotein NLPI; TPR, 30.2 3.9E+02 0.013 26.0 15.3 25 821-845 218-242 (275)
161 3sz7_A HSC70 cochaperone (SGT) 30.1 2.1E+02 0.0071 26.3 9.2 60 751-810 14-73 (164)
162 2xm6_A Protein corresponding t 29.6 6.1E+02 0.021 28.0 18.7 38 628-665 171-214 (490)
163 3ro3_A PINS homolog, G-protein 29.1 2.6E+02 0.009 24.2 9.4 106 311-416 4-117 (164)
164 3mkq_A Coatomer beta'-subunit; 28.4 57 0.0019 38.7 5.9 51 57-114 725-775 (814)
165 4gcn_A Protein STI-1; structur 27.3 2.9E+02 0.0098 24.6 9.3 107 753-884 13-120 (127)
166 4gco_A Protein STI-1; structur 26.8 2.5E+02 0.0086 25.1 8.8 57 753-809 18-74 (126)
167 2vyi_A SGTA protein; chaperone 26.8 2.8E+02 0.0096 23.2 8.9 105 752-858 16-129 (131)
168 3opb_A SWI5-dependent HO expre 26.7 2.1E+02 0.0072 35.2 10.4 30 472-501 697-727 (778)
169 3rjv_A Putative SEL1 repeat pr 26.4 4.5E+02 0.015 25.5 15.0 138 266-416 6-157 (212)
170 3gyz_A Chaperone protein IPGC; 24.3 4.4E+02 0.015 24.6 10.4 37 457-493 106-143 (151)
171 3jxy_A Alkylpurine DNA glycosy 23.8 1.7E+02 0.0057 30.2 7.8 82 794-906 125-206 (232)
172 3gw4_A Uncharacterized protein 23.4 4.4E+02 0.015 24.3 13.9 124 287-416 3-135 (203)
173 2lni_A Stress-induced-phosphop 23.1 3.3E+02 0.011 23.0 8.6 107 750-858 18-133 (133)
174 3mkq_B Coatomer subunit alpha; 22.5 2.9E+02 0.01 27.7 8.9 37 71-112 90-126 (177)
175 1elr_A TPR2A-domain of HOP; HO 21.7 3.3E+02 0.011 22.8 8.3 25 786-810 42-66 (131)
176 2e2e_A Formate-dependent nitri 21.5 2.7E+02 0.0093 25.6 8.2 18 864-881 132-149 (177)
177 4ga2_A E3 SUMO-protein ligase 21.2 2.8E+02 0.0094 25.5 8.1 58 750-807 33-90 (150)
178 2xcb_A PCRH, regulatory protei 20.7 3.1E+02 0.011 24.6 8.2 59 752-810 22-80 (142)
179 3gw4_A Uncharacterized protein 20.5 5E+02 0.017 23.9 12.0 126 711-836 24-165 (203)
180 2xev_A YBGF; tetratricopeptide 20.2 1.9E+02 0.0065 24.8 6.4 46 72-117 41-89 (129)
No 1
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=100.00 E-value=5.1e-94 Score=879.59 Aligned_cols=533 Identities=30% Similarity=0.459 Sum_probs=450.7
Q ss_pred hHHHHHHHhcCCCC-Cc-----cccCCC--CCCCC-------CChhhhhhhhhhhhhhcccccChHHHHHHHHHHHHHHh
Q psy6893 2 DVFEAAIKQMTPPR-SF-----TTRSRW--PCPPF-------SRVHSALKSCVPWCLAMSSIQSRSFRAQILRTLVRLYH 66 (988)
Q Consensus 2 ~~~~~~~~~~~~~~-~~-----~~~~~~--~~~~~-------~~~~~~L~y~~~~~~~~~~v~~~~fR~~vL~lL~~ly~ 66 (988)
.||++|++ .+..+ ++ ++|+|+ +++.= ++...+|.|++. +|++++++++||++|||+++++|+
T Consensus 150 ~iv~~cl~-hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls--~v~~lv~p~~fr~~vLr~l~~Iy~ 226 (963)
T 4ady_A 150 RMIEKCLK-ASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLT--LAITTVTNSKFRSSILRKSFDFLM 226 (963)
T ss_dssp HHHHHHHH-HTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHH--HHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHH--HhhccCCChHHHHHHHHHHHHHHH
Confidence 58889998 67766 33 999998 43321 456799999999 559999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHcCChHHHHHHHHHhhcCCCCchhHHHHHHHhhcccccHHHHHHHHHhhcccCCCCCCCcccccc
Q psy6893 67 SLSVPDYVNMAQCWIYLDDPRSVANLLGKLVAGSADDDLMAAQIGFDLYESATQAFLASVLQELKTCAPIPDATHVVVKV 146 (988)
Q Consensus 67 ~~~~pDy~~~~qc~~~Lnd~~~va~il~~L~~~~~~~~l~ayQiaFdL~~~~~Q~fl~~v~~~l~~~~~~~~~~~~~~~~ 146 (988)
+++.|||+++|||+++|||++.|+++|.+|+. .++.+|||||||||+++++|.||..|++.|+...
T Consensus 227 k~~~~dy~~a~~~ai~LnD~~li~~if~~l~~--~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~~e------------ 292 (963)
T 4ady_A 227 NMPNCDYLTLNKVVVNLNDAGLALQLFKKLKE--ENDEGLSAQIAFDLVSSASQQLLEILVTELTAQG------------ 292 (963)
T ss_dssp HSSSCCHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTT------------
T ss_pred hCCchhHHHHHHHHHHcCCHHHHHHHHHHHHh--cccHHHHHHHHHHHhcccchHHHHHHHHhccccc------------
Confidence 99999999999999999999999999999985 3678999999999999999999999999886410
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhhhcccCccchhhHHHHhhhcccchH
Q psy6893 147 PVEGAPTPATPDTEAPTPAPGTESGPSSTTPGPETKTLESLNEKEKQLQARITKLSKILSGEVSIDLHLQFLIRSNKTDM 226 (988)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IL~g~~~~~l~~~fL~~~n~~d~ 226 (988)
.++++++||+|+.++++|++||+++|++|+
T Consensus 293 --------------------------------------------------~~~kL~~ILsg~~~~~Lyl~FL~~~n~~d~ 322 (963)
T 4ady_A 293 --------------------------------------------------YDPALLNILSGLPTCDYYNTFLLNNKNIDI 322 (963)
T ss_dssp --------------------------------------------------CCHHHHHHTTSHHHHHHHHHHHHHHCCCCH
T ss_pred --------------------------------------------------hhHHHHHHhCCCChHHHHHHHHHhccccch
Confidence 025899999999999999999999999999
Q ss_pred HhHHhhhhhh--hhhhhhhHHHHHHHhhhccCCcccccccchhHHHhhccchhhHHhhhccceecCChHHHHHHHhcccC
Q psy6893 227 LILKNTKESI--RVSICHTATIIANAFMHSGTTSDQFLRDNLEWLARATNWAKLTATASLGVIHRGHETEALAHMQSYLP 304 (988)
Q Consensus 227 ~iL~~~k~s~--r~s~~~~A~~~~Naf~naG~~~D~fl~~n~~Wl~k~~~~~~~sAtASLG~Ih~~~~~~gl~~l~~yL~ 304 (988)
.+|+++|+++ |+|++|+|++|||||||||||+|+|||+|.+|++|+++|+||+|+||||+||+||+++|+++|++|||
T Consensus 323 ~~l~~~K~~ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~ 402 (963)
T 4ady_A 323 GLLNKSKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLP 402 (963)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTST
T ss_pred hhHHHHHhhhcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhcc
Confidence 9999999998 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccchhHHHHHhhhccCCCCchhHHHHHHhhhhcCCCc--------hhHHHHHHHHHHHhhccCCChhHHHHH
Q psy6893 305 RETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEDD--------AVTGEAAGIAMGLVLLGSKSESAIQDM 376 (988)
Q Consensus 305 s~~~~~~~y~~~GaL~alGli~~g~~~~~~d~l~~lL~~~~~~d~--------~~~~~aA~lglGL~~~Gs~~~~~~~~L 376 (988)
++ +++++|+++|||||||+|++|+++.. +++|.+++.+++ ..++.+|++|||++|+||+++++++.|
T Consensus 403 ~~-~s~~~~ik~GAllaLGli~ag~~~~~----~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L 477 (963)
T 4ady_A 403 GS-RASSRFIKGGSLYGLGLIYAGFGRDT----TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEAL 477 (963)
T ss_dssp TS-CCSCHHHHHHHHHHHHHHTTTTTHHH----HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred cc-CCCcHHHHHHHHHHHHHhcCCCcHHH----HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 42 12578999999999999999998633 455555443333 678899999999999999999999999
Q ss_pred HHhhhhcchHH-HHHHHHHHHHHHhcCChhhHHHHHHHHhhcchhhhhccchhHHHHHhhhhhhhcccc--chhhHHh--
Q psy6893 377 VAYAKETQHEK-ILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCVSYLYFDLF--SDLTYRI-- 451 (988)
Q Consensus 377 ~~~~~dt~~E~-~~r~lalgl~~v~~g~~e~a~~li~~L~~~~d~~lr~~~~~~~~l~l~Lgll~~g~~--~e~~l~~-- 451 (988)
+|++.+++... ..+++++|++|+|+||.++++.|++.++++.+. .+.|++++|||++++|++ ++.+++.
T Consensus 478 ~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e------~vrR~aalgLGll~~g~~e~~~~li~~L~ 551 (963)
T 4ady_A 478 KEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHG------NITRGLAVGLALINYGRQELADDLITKML 551 (963)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH------HHHHHHHHHHHHHTTTCGGGGHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcH------HHHHHHHHHHHhhhCCChHHHHHHHHHHH
Confidence 99999777433 578999999999999999999999999876532 466789999999999999 8888887
Q ss_pred -hccchh----HHHHHhhhccCCCHHHHHHHHHHhccCCCchhhHHHHHHHHHHhhcCccccccccCCCCchhHHhhccc
Q psy6893 452 -VKNRSG----MYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRTLFYVAPACTRSPWPGVISLLDD 526 (988)
Q Consensus 452 -~~~~~~----~~~~~~AYaGTGN~~~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~~~~~~~~g~~~~~~~~p~ai~lL~~ 526 (988)
.++|.. +++++||||||||+++||+|||+|++|.++||||.||++||||++++| ..+|..+.+|
T Consensus 552 ~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L-- 620 (963)
T 4ady_A 552 ASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLL-- 620 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTG--
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHH--
Confidence 355544 449999999999999999999999999999999999999999999876 1111111100
Q ss_pred hhhhhhHhhHHHhhhhcccCCCCchhhHHHHHHHHHhhhccCCchhHHHHHHHHHhcCCchHHHHHhhhhhhhhhhhhhH
Q psy6893 527 PMIELKEFSLKKLNDIVDDFWPENEKEKQLQARITKLSKILSGEVSIDLHLQFLIRSNKTDMLILKNTKESIRVSICHTA 606 (988)
Q Consensus 527 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~Il~g~~~~~l~l~fL~~~n~tD~~il~~~kds~r~s~~h~A 606 (988)
T Consensus 621 -------------------------------------------------------------------------------- 620 (963)
T 4ady_A 621 -------------------------------------------------------------------------------- 620 (963)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcCCCchhhhcchhHHHHhhcccchhhhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhh
Q psy6893 607 TIIANAFMHSGTTSDQFLRDNLEWLARATNWAKLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGL 686 (988)
Q Consensus 607 ~~~ana~~naGt~~D~flr~~~~wl~k~~~w~kfsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGl 686 (988)
+. +.++++|.||.+|||+
T Consensus 621 ----------------------------------------------------------~~----~~d~~VR~gAalALGl 638 (963)
T 4ady_A 621 ----------------------------------------------------------SK----SHNAHVRCGTAFALGI 638 (963)
T ss_dssp ----------------------------------------------------------GG----CSCHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------Hh----cCCHHHHHHHHHHHHH
Confidence 00 2357889999999999
Q ss_pred hccCCchH-HHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCH---HHHHHHHHhh--ccC---ChhhHHHHHHHhhcc
Q psy6893 687 IHANHGAV-INDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARD---DIYEQLKFNL--YQD---DAVTGEAAGIAMGLV 757 (988)
Q Consensus 687 I~ag~~~~-~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~---dv~~~L~~~l--~~D---~~~~~e~AalAlGLI 757 (988)
+++|.+.. +++.| ..+.+.++..||.+|+++||++.+|+.+. .+-..+..+. +.| +......+.+|+|+|
T Consensus 639 i~aGn~~~~aid~L-~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 639 ACAGKGLQSAIDVL-DPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp HTSSSCCHHHHHHH-HHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred hccCCCcHHHHHHH-HHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 99998864 66644 56656667899999999999999999887 5555444333 234 233445799999999
Q ss_pred cCCCCCHHH
Q psy6893 758 LLGSKSESA 766 (988)
Q Consensus 758 ~vGs~n~d~ 766 (988)
.+|-+|..+
T Consensus 718 ~aG~~n~ti 726 (963)
T 4ady_A 718 NAGGRNVTI 726 (963)
T ss_dssp TTGGGTEEE
T ss_pred hcCCCceEE
Confidence 999888655
No 2
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=100.00 E-value=7.2e-66 Score=631.23 Aligned_cols=339 Identities=44% Similarity=0.698 Sum_probs=309.2
Q ss_pred HHHhhhccCCchhHHHHHHHHHhcCCchHHHHHhhhhhh--hhhhhhhHHHHHHHHhhcCCCchhhhcchhHHHHhhccc
Q psy6893 560 ITKLSKILSGEVSIDLHLQFLIRSNKTDMLILKNTKESI--RVSICHTATIIANAFMHSGTTSDQFLRDNLEWLARATNW 637 (988)
Q Consensus 560 ~~~l~~Il~g~~~~~l~l~fL~~~n~tD~~il~~~kds~--r~s~~h~A~~~ana~~naGt~~D~flr~~~~wl~k~~~w 637 (988)
.+++..||+|+.++++|++||+++|++|+.+|+++|++. |++++|+|++||||||||||++|+|||++.+|++|+++|
T Consensus 294 ~~kL~~ILsg~~~~~Lyl~FL~~~n~~d~~~l~~~K~~ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~ 373 (963)
T 4ady_A 294 DPALLNILSGLPTCDYYNTFLLNNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNW 373 (963)
T ss_dssp CHHHHHHTTSHHHHHHHHHHHHHHCCCCHHHHHHHHHHSCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTH
T ss_pred hHHHHHHhCCCChHHHHHHHHHhccccchhhHHHHHhhhcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhccchH
Confidence 578999999999999999999999999999999999986 889999999999999999999999999999999999999
Q ss_pred chhhhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcC-------chh
Q psy6893 638 AKLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDAT-------NEM 710 (988)
Q Consensus 638 ~kfsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~-------~~~ 710 (988)
+||+|+||||+||.||+++|+++|++|||++ .++++|+++||+||||+|++|+++++..+|.+.+.+++ ++.
T Consensus 374 ~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~-~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ 452 (963)
T 4ady_A 374 AKFTATASLGVIHKGNLLEGKKVMAPYLPGS-RASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDV 452 (963)
T ss_dssp HHHHHHHHHHHHTSSCTTTHHHHHTTTSTTS-CCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHH
T ss_pred HHHHHHHHhhhhccCchHHHHHHHHHhcccc-CCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHH
Confidence 9999999999999999999999999999842 25688999999999999999999888888888887655 479
Q ss_pred hHHHHHHhhHhhhcCCCCHHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHH
Q psy6893 711 VRHGGCLGLGLAAMGSARDDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGI 790 (988)
Q Consensus 711 ir~gA~LGLGla~~Gs~~~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgL 790 (988)
+|||||||||++|+||+|+++++.|+++++.|+.+.++.||+|||+||+||||.++++.|++++.++++++++|++++||
T Consensus 453 ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgL 532 (963)
T 4ady_A 453 LLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGL 532 (963)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 99999999999999999999999999999878878888999999999999999999999999999999999999999999
Q ss_pred HHHhcCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHH---------hhhhhhhhhhhcc--
Q psy6893 791 SFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAIL---------RRSGMYTIAMAYC-- 859 (988)
Q Consensus 791 gLi~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~---------~~lG~alia~g~~-- 859 (988)
|++++|++++++.+++.|..+.||+.||+++++++||||||||+++||+|||.|.. +++|+++|++|+.
T Consensus 533 Gll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 533 ALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSS
T ss_pred HhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999985 6777777766653
Q ss_pred -----------------------------CCCchHHHHHhhhhhccCCChhhhhhHHhhhhhhhhhhhhh
Q psy6893 860 -----------------------------GSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRKKRT 900 (988)
Q Consensus 860 -----------------------------~tgn~~air~ll~~~~sd~~~~vrraa~~alg~i~~~npeq 900 (988)
|+|++.+|. +|+.+.+|++++||++|.+|||+|+..+.+.
T Consensus 613 v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid-~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 613 VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAID-VLDPLTKDPVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHH-HHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHH-HHHHHccCCCHHHHHHHHHHHHHHhcCCccc
Confidence 345555666 3344467788888888888888888765543
No 3
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.32 E-value=1.9e-05 Score=84.24 Aligned_cols=140 Identities=13% Similarity=0.090 Sum_probs=86.5
Q ss_pred HHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHHHHHHH
Q psy6893 656 EALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDDIYEQL 735 (988)
Q Consensus 656 ~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~dv~~~L 735 (988)
..+..|...+. +.++.+|..|+.+||.+.. ..++..|...+ .+++..+|..|+.+||.. |...+++...|
T Consensus 128 ~~~~~L~~~l~----d~~~~vR~~a~~aL~~~~~---~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~--~~~~~~~~~~L 197 (280)
T 1oyz_A 128 KIVEQSQITAF----DKSTNVRRATAFAISVIND---KATIPLLINLL-KDPNGDVRNWAAFAININ--KYDNSDIRDCF 197 (280)
T ss_dssp HHHHHHHHHTT----CSCHHHHHHHHHHHHTC------CCHHHHHHHH-TCSSHHHHHHHHHHHHHH--TCCCHHHHHHH
T ss_pred HHHHHHHHHhh----CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHH-cCCCHHHHHHHHHHHHhh--ccCcHHHHHHH
Confidence 45555666664 4567788888888887632 12455555544 345567888888888764 66677788888
Q ss_pred HHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHHhcccch
Q psy6893 736 KFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDA 814 (988)
Q Consensus 736 ~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~~~~dp 814 (988)
...+..++......|+.++|.+ | +..++..++..+.+. .+.+..+.+||-+ |..+....+.+.+...+++
T Consensus 198 ~~~l~d~~~~vR~~A~~aL~~~--~--~~~~~~~L~~~l~d~---~vr~~a~~aL~~i--~~~~~~~~L~~~l~~~~~~ 267 (280)
T 1oyz_A 198 VEMLQDKNEEVRIEAIIGLSYR--K--DKRVLSVLCDELKKN---TVYDDIIEAAGEL--GDKTLLPVLDTMLYKFDDN 267 (280)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHT--T--CGGGHHHHHHHHTSS---SCCHHHHHHHHHH--CCGGGHHHHHHHHTTSSCC
T ss_pred HHHhcCCCHHHHHHHHHHHHHh--C--CHhhHHHHHHHhcCc---cHHHHHHHHHHhc--CchhhhHHHHHHHhcCCCc
Confidence 8777433333445677777775 3 567777777776432 2444455555544 5566777777777655544
No 4
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.20 E-value=0.00018 Score=83.67 Aligned_cols=132 Identities=13% Similarity=0.019 Sum_probs=73.4
Q ss_pred hhhhhhhhccccc--CCh---HHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchH-----HHHHHHHHhhhcCc
Q psy6893 639 KLTATASLGVIHR--GHE---TEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAV-----INDYLLGQVKDATN 708 (988)
Q Consensus 639 kfsA~ASLG~Ih~--gn~---~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~-----~~~~Ll~~l~~s~~ 708 (988)
+..++.+||.+.. |.. ...+..+...+. ..++.+|..++.+++.+....+.+ ++..|...+ ++.+
T Consensus 341 R~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~----d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~-~d~~ 415 (588)
T 1b3u_A 341 KSALASVIMGLSPILGKDNTIEHLLPLFLAQLK----DECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELA-EDAK 415 (588)
T ss_dssp HHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHT----CSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHH-TCSS
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh-cCCC
Confidence 3455556665543 111 122334444553 345789999999999886655432 344554443 4455
Q ss_pred hhhHHHHHHhhHhhh--cCCC--CHHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHH
Q psy6893 709 EMVRHGGCLGLGLAA--MGSA--RDDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAK 775 (988)
Q Consensus 709 ~~ir~gA~LGLGla~--~Gs~--~~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~ 775 (988)
..+|..++-.||... .|.. .+.++..|...+..++....+.|..++|.+.-.-++......++..+.
T Consensus 416 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~ 486 (588)
T 1b3u_A 416 WRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 486 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 678888888877643 2322 345666666666333333456677777776443333334455555543
No 5
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.17 E-value=2.8e-05 Score=82.91 Aligned_cols=215 Identities=14% Similarity=0.137 Sum_probs=118.8
Q ss_pred chhhhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch--HHHHHHHHHhhhcCchhhHHHH
Q psy6893 638 AKLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--VINDYLLGQVKDATNEMVRHGG 715 (988)
Q Consensus 638 ~kfsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--~~~~~Ll~~l~~s~~~~ir~gA 715 (988)
-+..|+..||.+. + ..++..|..++. +.++.+|..|+.+||-+...... .++..|.+.+.+.++..+|..|
T Consensus 39 vr~~A~~~L~~~~--~-~~~~~~L~~~l~----d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a 111 (280)
T 1oyz_A 39 KRISSARVLQLRG--G-QDAVRLAIEFCS----DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATA 111 (280)
T ss_dssp HHHHHHHHHHHHC--C-HHHHHHHHHHHT----CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHccC--C-chHHHHHHHHHc----CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 3456666666654 3 246666766774 45667888888888877422111 1233333333455566788888
Q ss_pred HHhhHhhhcCC--CCHHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHH
Q psy6893 716 CLGLGLAAMGS--ARDDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFI 793 (988)
Q Consensus 716 ~LGLGla~~Gs--~~~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi 793 (988)
+.+||-...+. ..+.+...|...+..++......|+.++|-+ | +.+++..++..+.+. +..+.+..+.+||.+
T Consensus 112 ~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~--~--~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 112 IESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVI--N--DKATIPLLINLLKDP-NGDVRNWAAFAININ 186 (280)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------CCHHHHHHHHTCS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc--C--CHHHHHHHHHHHcCC-CHHHHHHHHHHHHhh
Confidence 88887653221 2455666666666433333344666777764 3 344666666665332 233444556667666
Q ss_pred hcCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHHhhhhhhhhhhhccCCCchHHHHHhhhh
Q psy6893 794 MYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAILRRSGMYTIAMAYCGSGSNVATKRLLHV 873 (988)
Q Consensus 794 ~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~~~lG~alia~g~~~tgn~~air~ll~~ 873 (988)
+....+....+++.|. ++++..|...+.+ ++. .|++.++..|+..
T Consensus 187 ~~~~~~~~~~L~~~l~-d~~~~vR~~A~~a--L~~--------------------------------~~~~~~~~~L~~~ 231 (280)
T 1oyz_A 187 KYDNSDIRDCFVEMLQ-DKNEEVRIEAIIG--LSY--------------------------------RKDKRVLSVLCDE 231 (280)
T ss_dssp TCCCHHHHHHHHHHTT-CSCHHHHHHHHHH--HHH--------------------------------TTCGGGHHHHHHH
T ss_pred ccCcHHHHHHHHHHhc-CCCHHHHHHHHHH--HHH--------------------------------hCCHhhHHHHHHH
Confidence 5555666666666553 4566666654332 222 2455666666666
Q ss_pred hccCCChhhhhhHHhhhhhhhhhhhhhhHhh
Q psy6893 874 AVSDVNDDVRREAVTALGFILFRKKRTRRKK 904 (988)
Q Consensus 874 ~~sd~~~~vrraa~~alg~i~~~npeq~pk~ 904 (988)
+.. + +||+.++.++|.+.. ++..|..
T Consensus 232 l~d-~--~vr~~a~~aL~~i~~--~~~~~~L 257 (280)
T 1oyz_A 232 LKK-N--TVYDDIIEAAGELGD--KTLLPVL 257 (280)
T ss_dssp HTS-S--SCCHHHHHHHHHHCC--GGGHHHH
T ss_pred hcC-c--cHHHHHHHHHHhcCc--hhhhHHH
Confidence 532 2 477777777776644 4444433
No 6
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.06 E-value=0.00027 Score=82.21 Aligned_cols=173 Identities=16% Similarity=0.047 Sum_probs=87.4
Q ss_pred HHHHHhcccCCCCCCCCCccchhHHHHHhhhccCCCC-chhHHHHHHhhhhcCCCchhHHHHHHHHHHHhhccCCChhHH
Q psy6893 295 ALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA-VINDYLLGQVKDATNEDDAVTGEAAGIAMGLVLLGSKSESAI 373 (988)
Q Consensus 295 gl~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~~-~~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~~~Gs~~~~~~ 373 (988)
.+..+-.+|-+ ++...+--|+.+++-+....+. .....++..|.+.. .++..++..++-.||-..---+..+..
T Consensus 11 ~i~~l~~~l~s----~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~ 85 (588)
T 1b3u_A 11 PIAVLIDELRN----EDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYV 85 (588)
T ss_dssp HHHHHHHHTTC----SCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGG
T ss_pred cHHHHHHHhhc----ccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHH
Confidence 35556667765 4677888888888765432221 12344555666655 456677788888887322111122333
Q ss_pred HHHHHhh----hhcchHHHHHHHHHHHHHHhcCCh-h----hHHHHHHHHhhcchhhhhccchhHHHHHhhhhhhhcccc
Q psy6893 374 QDMVAYA----KETQHEKILRGLAVGISFIMYGQL-E----NADDLVRDLCEEKDAILRRSGMYTIAMAYCVSYLYFDLF 444 (988)
Q Consensus 374 ~~L~~~~----~dt~~E~~~r~lalgl~~v~~g~~-e----~a~~li~~L~~~~d~~lr~~~~~~~~l~l~Lgll~~g~~ 444 (988)
..++|.+ .+. ...++.....++.-++.... + ..-.++..+..++++..|..+ +..+|.+
T Consensus 86 ~~ll~~L~~l~~~~-~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a------~~~l~~~----- 153 (588)
T 1b3u_A 86 HCLLPPLESLATVE-ETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSA------CGLFSVC----- 153 (588)
T ss_dssp GGGHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHH------GGGHHHH-----
T ss_pred HHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHH------HHHHHHH-----
Confidence 4444443 333 23344444455555543322 1 122334444444444444421 1111111
Q ss_pred chhhHHhhccchhHHHHHhhhccCCCHHHHHHHHHHhccCCCchhhHHHHHHHHHHhh
Q psy6893 445 SDLTYRIVKNRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILF 502 (988)
Q Consensus 445 ~e~~l~~~~~~~~~~~~~~AYaGTGN~~~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~~ 502 (988)
..+++......+-.+|.-+..|.++.||+.|+.+||-++-
T Consensus 154 ------------------~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~ 193 (588)
T 1b3u_A 154 ------------------YPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAK 193 (588)
T ss_dssp ------------------TTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred ------------------HHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 1122221222333334334467788999999999999874
No 7
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.00 E-value=0.0001 Score=75.02 Aligned_cols=189 Identities=22% Similarity=0.268 Sum_probs=127.6
Q ss_pred HHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHHHHHHH
Q psy6893 656 EALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDDIYEQL 735 (988)
Q Consensus 656 ~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~dv~~~L 735 (988)
+++..|...|. +.++.+|..|+.+||-+.. .+++..|...+. +++..+|..|+..||-. | +++.+..|
T Consensus 19 ~~~~~L~~~L~----~~~~~vR~~A~~~L~~~~~---~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~--~--~~~~~~~L 86 (211)
T 3ltm_A 19 EKVEMYIKNLQ----DDSYYVRRAAAYALGKIGD---ERAVEPLIKALK-DEDAWVRRAAADALGQI--G--DERAVEPL 86 (211)
T ss_dssp GGHHHHHHHTT----CSSHHHHHHHHHHHHHHCC---GGGHHHHHHHTT-CSCHHHHHHHHHHHHHH--C--CGGGHHHH
T ss_pred hHHHHHHHHHc----CCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHc-CCCHHHHHHHHHHHHhh--C--CHHHHHHH
Confidence 57778888885 5678999999999998833 235677776664 45788999999999874 3 56778888
Q ss_pred HHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHHhcccchh
Q psy6893 736 KFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAI 815 (988)
Q Consensus 736 ~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~~~~dp~ 815 (988)
...+..++......|..++|-+ | +.+++..+++++.+ .+..+....+.+||-+ |..+.+..+++.| .++++.
T Consensus 87 ~~~l~~~~~~vr~~a~~aL~~~--~--~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~--~~~~~~~~L~~~l-~d~~~~ 158 (211)
T 3ltm_A 87 IKALKDEDGWVRQSAAVALGQI--G--DERAVEPLIKALKD-EDWFVRIAAAFALGEI--GDERAVEPLIKAL-KDEDGW 158 (211)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHH--C--CGGGHHHHHHHTTC-SSHHHHHHHHHHHHHH--CCGGGHHHHHHHT-TCSSHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHh--C--cHHHHHHHHHHHhC-CCHHHHHHHHHHHHHc--CCHHHHHHHHHHH-cCCCHH
Confidence 8888544444455777788775 4 56778888887632 2333444555566554 6677777777766 567777
Q ss_pred hhhhcHHHHHHHHcCCCChhHHHHHHHHHHHhhhhhhhhhhhccCCCchHHHHHhhhhhccCCChhhhhhHHhhhhhhhh
Q psy6893 816 LRRSGMYTIAMAYCGSGSNVATKRLLHDAILRRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILF 895 (988)
Q Consensus 816 ~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~~~lG~alia~g~~~tgn~~air~ll~~~~sd~~~~vrraa~~alg~i~~ 895 (988)
.|...+. +++. .|.+.++..|..++. |+++.||++|..+|+.+..
T Consensus 159 vr~~a~~--aL~~--------------------------------~~~~~~~~~L~~~l~-d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 159 VRQSAAD--ALGE--------------------------------IGGERVRAAMEKLAE-TGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHH--HHHH--------------------------------HCSHHHHHHHHHHHH-HCCHHHHHHHHHHHHC---
T ss_pred HHHHHHH--HHHH--------------------------------hCchhHHHHHHHHHh-CCCHHHHHHHHHHHHhcCC
Confidence 7776433 3332 245778888877764 5789999999999988777
Q ss_pred hhhh
Q psy6893 896 RKKR 899 (988)
Q Consensus 896 ~npe 899 (988)
+.+.
T Consensus 204 ~~~~ 207 (211)
T 3ltm_A 204 FNHH 207 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 6544
No 8
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.85 E-value=0.0048 Score=73.49 Aligned_cols=101 Identities=9% Similarity=-0.002 Sum_probs=53.0
Q ss_pred cchhhhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCC-chHHHHHHHHHhhhcCchhhHHHH
Q psy6893 637 WAKLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANH-GAVINDYLLGQVKDATNEMVRHGG 715 (988)
Q Consensus 637 w~kfsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~-~~~~~~~Ll~~l~~s~~~~ir~gA 715 (988)
.-++.|..+|+.|...+++.....+..++.. .+++.++|.-|+-.++.+.... -..++..|...+.+ .+..+|..+
T Consensus 297 ~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~--~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~-~d~~~r~~~ 373 (591)
T 2vgl_B 297 EVQYVALRNINLIVQKRPEILKQEIKVFFVK--YNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATE-VDVDFVRKA 373 (591)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTTTCTTTTSCC--TTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTS-SCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhChHHHHHHHHhheec--cCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhc-CCHHHHHHH
Confidence 4567777777777655543222223332221 1334677777777766653221 12355555555533 355677777
Q ss_pred HHhhHhhhcCCC--CHHHHHHHHHhhc
Q psy6893 716 CLGLGLAAMGSA--RDDIYEQLKFNLY 740 (988)
Q Consensus 716 ~LGLGla~~Gs~--~~dv~~~L~~~l~ 740 (988)
+-.+|..+.... .+.+++.|..++.
T Consensus 374 v~aI~~la~~~~~~~~~~v~~Ll~ll~ 400 (591)
T 2vgl_B 374 VRAIGRCAIKVEQSAERCVSTLLDLIQ 400 (591)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHHc
Confidence 777777544322 2344556666553
No 9
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.79 E-value=0.00037 Score=70.31 Aligned_cols=183 Identities=22% Similarity=0.283 Sum_probs=122.2
Q ss_pred HHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHHHHHHH
Q psy6893 656 EALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDDIYEQL 735 (988)
Q Consensus 656 ~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~dv~~~L 735 (988)
.....+-.+|. +.++.+|..|+.+||.+.. ..++..|+..+ .+++..+|..|+..||.. | +++.+..|
T Consensus 14 ~~~~~~i~~L~----~~~~~vr~~A~~~L~~~~~---~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~--~--~~~~~~~L 81 (201)
T 3ltj_A 14 EKVEMYIKNLQ----DDSYYVRRAAAYALGKIGD---ERAVEPLIKAL-KDEDAWVRRAAADALGQI--G--DERAVEPL 81 (201)
T ss_dssp HHHHHHHHHTT----CSCHHHHHHHHHHHHHHCC---GGGHHHHHHHT-TCSSHHHHHHHHHHHHHH--C--CGGGHHHH
T ss_pred cchHHHHHHhc----CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHH-cCCCHHHHHHHHHHHHhh--C--CHHHHHHH
Confidence 35556666775 6678999999999998732 23566676666 455678999999999874 3 45678888
Q ss_pred HHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHHhcccchh
Q psy6893 736 KFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAI 815 (988)
Q Consensus 736 ~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~~~~dp~ 815 (988)
...+..++......|..++|.+ | +.+++..++..+.+ .+..+...++.+||-+ |..+.+..+++.| .++++.
T Consensus 82 ~~~l~d~~~~vr~~a~~aL~~~--~--~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~--~~~~~~~~L~~~l-~d~~~~ 153 (201)
T 3ltj_A 82 IKALKDEDGWVRQSAAVALGQI--G--DERAVEPLIKALKD-EDWFVRIAAAFALGEI--GDERAVEPLIKAL-KDEDGW 153 (201)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHH--C--CGGGHHHHHHHTTC-SSHHHHHHHHHHHHHH--TCGGGHHHHHHHT-TCSSHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHh--C--cHHHHHHHHHHHcC-CCHHHHHHHHHHHHHh--CCHHHHHHHHHHH-cCCCHH
Confidence 8877443334445677777775 4 56677888877632 2333334555556544 5667777777665 456777
Q ss_pred hhhhcHHHHHHHHcCCCChhHHHHHHHHHHHhhhhhhhhhhhccCCCchHHHHHhhhhhccCCChhhhhhHHhhhhhh
Q psy6893 816 LRRSGMYTIAMAYCGSGSNVATKRLLHDAILRRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFI 893 (988)
Q Consensus 816 ~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~~~lG~alia~g~~~tgn~~air~ll~~~~sd~~~~vrraa~~alg~i 893 (988)
.|...+.++ +. .|.+.++..|..++ .|+++.||++|..+|+-+
T Consensus 154 vr~~A~~aL--~~--------------------------------~~~~~~~~~L~~~l-~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 154 VRQSAADAL--GE--------------------------------IGGERVRAAMEKLA-ETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHH--HH--------------------------------HCSHHHHHHHHHHH-HHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH--HH--------------------------------hCchhHHHHHHHHH-hCCCHHHHHHHHHHHHHH
Confidence 776644332 22 25677888888876 457899999999888654
No 10
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.71 E-value=0.093 Score=62.86 Aligned_cols=111 Identities=9% Similarity=0.079 Sum_probs=62.2
Q ss_pred HHHhhccCCChhHHHHHHHhhhhcchHHHHHHHHHHHHHHhcCChhhHHHHHHHHhhc---chhhhhccchhHHHHHhhh
Q psy6893 360 MGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCEE---KDAILRRSGMYTIAMAYCV 436 (988)
Q Consensus 360 lGL~~~Gs~~~~~~~~L~~~~~dt~~E~~~r~lalgl~~v~~g~~e~a~~li~~L~~~---~d~~lr~~~~~~~~l~l~L 436 (988)
+-+.+.|-.-....-+.+.++.+.+++ ..|-.-+++......++|.+--+++.|..+ +++..|. +|
T Consensus 59 i~~~~~G~d~~~~~~~vik~~~s~~~~-~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~-------lA--- 127 (618)
T 1w63_A 59 LYMHMLGYPAHFGQLECLKLIASQKFT-DKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQG-------LA--- 127 (618)
T ss_dssp HHHHHTTCCCGGGHHHHHHHHHSSSHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHH-------HH---
T ss_pred HHHHHcCCCCcchHHHHHHHHcCCchH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHH-------HH---
Confidence 334456654444445556666655543 334444566666667778766666666543 3333332 22
Q ss_pred hhhhccccchhhHHhhccchhHHHHHhhhccCCCH--HHHHHHHHHhccCCCchhhHHHHHHHHHHhhcCc
Q psy6893 437 SYLYFDLFSDLTYRIVKNRSGMYTIAMAYCGSGSN--VATKRLLHVAVSDVNDDVRREAVTALGFILFRTL 505 (988)
Q Consensus 437 gll~~g~~~e~~l~~~~~~~~~~~~~~AYaGTGN~--~~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~~~~~ 505 (988)
+.+++.+|+.+. ..+..+.. +..|.++-||+.|+++++-|.-..|
T Consensus 128 -----------------------L~~L~~i~~~~~~~~l~~~l~~-~L~~~~~~VRk~A~~al~~l~~~~p 174 (618)
T 1w63_A 128 -----------------------LCTLGCMGSSEMCRDLAGEVEK-LLKTSNSYLRKKAALCAVHVIRKVP 174 (618)
T ss_dssp -----------------------HHHHHHHCCHHHHHHHHHHHHH-HHHSCCHHHHHHHHHHHHHHHHHCG
T ss_pred -----------------------HHHHHhcCCHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHCh
Confidence 233444443211 11333333 3457788999999999999997665
No 11
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.70 E-value=0.0046 Score=76.33 Aligned_cols=117 Identities=13% Similarity=-0.066 Sum_probs=74.2
Q ss_pred HHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch--------HHHHHHHHHhhhcCc-hhhHHHHHHhhHhhhcC
Q psy6893 655 TEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--------VINDYLLGQVKDATN-EMVRHGGCLGLGLAAMG 725 (988)
Q Consensus 655 ~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--------~~~~~Ll~~l~~s~~-~~ir~gA~LGLGla~~G 725 (988)
..++..|-..|. +.++.++.-|+.+|+-+..+... ..+..|+..+.++.+ +.++..|+..||-...+
T Consensus 398 ~~~i~~Lv~lL~----~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~ 473 (780)
T 2z6g_A 398 EGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 473 (780)
T ss_dssp HHHHHHHHHHTT----CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred hhHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 457778888885 56778999999999999776531 246667776665433 47899999999877544
Q ss_pred CCCH----------HHHHHHHHhhccCCh-hhHHHHHHHhhcccCCCCCH------HHHHHHHHHHH
Q psy6893 726 SARD----------DIYEQLKFNLYQDDA-VTGEAAGIAMGLVLLGSKSE------SAIQDMVAYAK 775 (988)
Q Consensus 726 s~~~----------dv~~~L~~~l~~D~~-~~~e~AalAlGLI~vGs~n~------d~i~~ll~~~~ 775 (988)
.... .++..|..++..++. ...+.|+.+++-+..++.+. .++..|++++.
T Consensus 474 ~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~ 540 (780)
T 2z6g_A 474 HQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 540 (780)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHH
T ss_pred CchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHH
Confidence 3331 124566666654433 33456777777776553322 24455566554
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.60 E-value=0.0053 Score=68.87 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=59.3
Q ss_pred HHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch--------HHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCC
Q psy6893 657 ALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--------VINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSAR 728 (988)
Q Consensus 657 ~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--------~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~ 728 (988)
++..|-+++. +.++.++..|+.+||-+..+... .++..|+..+.+ .+..+|..|+..|+-...+...
T Consensus 277 ~l~~L~~ll~----~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~ 351 (450)
T 2jdq_A 277 ALQSLLHLLS----SPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT-AEFRTRKEAAWAITNATSGGSA 351 (450)
T ss_dssp HHHHHHHHTT----CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHCCH
T ss_pred cHHHHHHHHc----CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHcCCCH
Confidence 6667777775 45678999999999999776532 144556655544 4677999999999877654221
Q ss_pred H--------HHHHHHHHhhccCChhhHHHHHHHhhcc
Q psy6893 729 D--------DIYEQLKFNLYQDDAVTGEAAGIAMGLV 757 (988)
Q Consensus 729 ~--------dv~~~L~~~l~~D~~~~~e~AalAlGLI 757 (988)
+ .++..|..++...+....+.|..+++.+
T Consensus 352 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 388 (450)
T 2jdq_A 352 EQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI 388 (450)
T ss_dssp HHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1 2344555555333333344455555443
No 13
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.54 E-value=0.068 Score=63.57 Aligned_cols=81 Identities=15% Similarity=0.224 Sum_probs=43.7
Q ss_pred HHhhhccceecCChHHH-HHHHhcccCCCCCCCCCccchhHHHHHhhhccCCCCchh-HHHHHHhhhhcCCCchhHHHHH
Q psy6893 279 TATASLGVIHRGHETEA-LAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVIN-DYLLGQVKDATNEDDAVTGEAA 356 (988)
Q Consensus 279 sAtASLG~Ih~~~~~~g-l~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~~~~~-d~l~~lL~~~~~~d~~~~~~aA 356 (988)
.|.-+||-|..-+..+. ...+.+.|-+ +++|++-.|.++++-++...++... ..+...|...+...++.++.+|
T Consensus 105 ~AL~~L~~i~~~~~~~~l~~~l~~~L~d----~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A 180 (591)
T 2vgl_B 105 LAVRTMGCIRVDKITEYLCEPLRKCLKD----EDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANA 180 (591)
T ss_dssp HHHHHHHTCCSGGGHHHHHHHHHHHSSC----SCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHcCC----CChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHH
Confidence 34445555543332222 2224444443 4678888888888777664443222 1345555555555566677777
Q ss_pred HHHHHHh
Q psy6893 357 GIAMGLV 363 (988)
Q Consensus 357 ~lglGL~ 363 (988)
+.+|+-+
T Consensus 181 ~~aL~~i 187 (591)
T 2vgl_B 181 VAALSEI 187 (591)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777643
No 14
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.33 E-value=0.0052 Score=71.34 Aligned_cols=144 Identities=16% Similarity=0.091 Sum_probs=84.3
Q ss_pred hhHHHHHHhhhhcCCCchhHHHHHHHHHHHhhccCCCh--------hHHHHHHHhhhhcchHHHHHHHHHHHHHHhcCCh
Q psy6893 333 INDYLLGQVKDATNEDDAVTGEAAGIAMGLVLLGSKSE--------SAIQDMVAYAKETQHEKILRGLAVGISFIMYGQL 404 (988)
Q Consensus 333 ~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~~~Gs~~~--------~~~~~L~~~~~dt~~E~~~r~lalgl~~v~~g~~ 404 (988)
....++..|. +++...+..|+.+|+-+..+..++ .++..|+.++.+.+...+....+..|..+..++.
T Consensus 75 ~l~~lv~~L~----s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~ 150 (528)
T 4b8j_A 75 SLPAMIGGVY----SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTS 150 (528)
T ss_dssp CHHHHHHHHT----SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHc----CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 3455555553 456778888888887776665422 3567788877766545566666777778888766
Q ss_pred hh---------HHHHHHHHhhcchhhhhccchhHHHHHhhhhhhhccccchhhHHhhccchhHHHHHhhhccCCCHHHHH
Q psy6893 405 EN---------ADDLVRDLCEEKDAILRRSGMYTIAMAYCVSYLYFDLFSDLTYRIVKNRSGMYTIAMAYCGSGSNVATK 475 (988)
Q Consensus 405 e~---------a~~li~~L~~~~d~~lr~~~~~~~~l~l~Lgll~~g~~~e~~l~~~~~~~~~~~~~~AYaGTGN~~~Iq 475 (988)
+. +..+++. +.+.++.+|..+. .+|+-+..+ .++....+. - ...|.
T Consensus 151 ~~~~~~~~~g~i~~L~~l-L~~~~~~v~~~a~------~aL~~l~~~----------~~~~~~~i~---~-----~g~l~ 205 (528)
T 4b8j_A 151 ENTKVVIDHGAVPIFVKL-LGSSSDDVREQAV------WALGNVAGD----------SPKCRDLVL---A-----NGALL 205 (528)
T ss_dssp HHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHH------HHHHHHHHT----------CHHHHHHHH---H-----TTCHH
T ss_pred HHHHHHHhCCcHHHHHHH-hcCCCHHHHHHHH------HHHHHHhCC----------ChhhHHHHH---H-----CCcHH
Confidence 54 3334443 3344555555321 122211100 000001110 0 12578
Q ss_pred HHHHHhccCCCchhhHHHHHHHHHHhhcCc
Q psy6893 476 RLLHVAVSDVNDDVRREAVTALGFILFRTL 505 (988)
Q Consensus 476 ~LLhi~~s~~~~dvrr~AV~~lg~I~~~~~ 505 (988)
.|++++..+.+..+|+.|+.+|+.++...|
T Consensus 206 ~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 206 PLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 889888777788899999999999987643
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.31 E-value=0.0086 Score=69.72 Aligned_cols=141 Identities=15% Similarity=0.136 Sum_probs=76.3
Q ss_pred hHHHHHHhhhhcCCCchhHHHHHHHHHHHhhccCCCh--------hHHHHHHHhhhhcchHHHHHHHHHHHHHHhcCChh
Q psy6893 334 NDYLLGQVKDATNEDDAVTGEAAGIAMGLVLLGSKSE--------SAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLE 405 (988)
Q Consensus 334 ~d~l~~lL~~~~~~d~~~~~~aA~lglGL~~~Gs~~~--------~~~~~L~~~~~dt~~E~~~r~lalgl~~v~~g~~e 405 (988)
...+...|. +++...+..|+..|+-+.....+. .++..|+.++.+.+...+....+-.|.-+..+..+
T Consensus 89 i~~lv~~L~----s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 89 LPQMTQQLN----SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp HHHHHHHHS----CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHc----CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 444554443 455677777877777554433222 35677777777654444555556667777776543
Q ss_pred h---------HHHHHHHHhhcchhhhhccchhHHHHHhhhhhhhccccchhhHHhhccchhHHHHHhhhccCCCHHHHHH
Q psy6893 406 N---------ADDLVRDLCEEKDAILRRSGMYTIAMAYCVSYLYFDLFSDLTYRIVKNRSGMYTIAMAYCGSGSNVATKR 476 (988)
Q Consensus 406 ~---------a~~li~~L~~~~d~~lr~~~~~~~~l~l~Lgll~~g~~~e~~l~~~~~~~~~~~~~~AYaGTGN~~~Iq~ 476 (988)
. +..+++.|. +.++.+|..+. .+|+-+..+. +.....+. - ...|..
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~-~~~~~vr~~A~------~aL~~l~~~~----------~~~~~~~~---~-----~~~l~~ 219 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLY-TGSVEVKEQAI------WALGNVAGDS----------TDYRDYVL---Q-----CNAMEP 219 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHH-HCCHHHHHHHH------HHHHHHHTTC----------HHHHHHHH---H-----TTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHc-CCCHHHHHHHH------HHHHHHhCCC----------ccchHHHH---H-----cCcHHH
Confidence 3 344555443 34555555321 1222111000 00000010 0 124667
Q ss_pred HHHHhccCCCchhhHHHHHHHHHHhhcC
Q psy6893 477 LLHVAVSDVNDDVRREAVTALGFILFRT 504 (988)
Q Consensus 477 LLhi~~s~~~~dvrr~AV~~lg~I~~~~ 504 (988)
|++++.+ .+.++|+.|+.+|+-++.+.
T Consensus 220 L~~ll~~-~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 220 ILGLFNS-NKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHGGGS-CCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHhcc-CCHHHHHHHHHHHHHHhCCC
Confidence 7777755 66789999999999998654
No 16
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.23 E-value=0.0027 Score=64.43 Aligned_cols=169 Identities=19% Similarity=0.225 Sum_probs=112.2
Q ss_pred cchhhhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcCchhhHHHHH
Q psy6893 637 WAKLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEMVRHGGC 716 (988)
Q Consensus 637 w~kfsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~~~~ir~gA~ 716 (988)
+-+..|+..||.+.. ..++..|..++. +.++.+|..|+.+||.+.. .+.+..|...+ ++++..+|..|+
T Consensus 34 ~vR~~A~~~L~~~~~---~~~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~---~~~~~~L~~~l-~~~~~~vr~~a~ 102 (211)
T 3ltm_A 34 YVRRAAAYALGKIGD---ERAVEPLIKALK----DEDAWVRRAAADALGQIGD---ERAVEPLIKAL-KDEDGWVRQSAA 102 (211)
T ss_dssp HHHHHHHHHHHHHCC---GGGHHHHHHHTT----CSCHHHHHHHHHHHHHHCC---GGGHHHHHHHT-TCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC---ccHHHHHHHHHc----CCCHHHHHHHHHHHHhhCC---HHHHHHHHHHH-cCCCHHHHHHHH
Confidence 356777778877653 357778888885 5578999999999999842 23566666665 456778999999
Q ss_pred HhhHhhhcCCCCHHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcC
Q psy6893 717 LGLGLAAMGSARDDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYG 796 (988)
Q Consensus 717 LGLGla~~Gs~~~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~G 796 (988)
.+||-. | +++.+..|...+..++......|+.++|.+ | +.+++..+++++.+. +..+....+.+|+- ++
T Consensus 103 ~aL~~~--~--~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~--~--~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~--~~ 171 (211)
T 3ltm_A 103 VALGQI--G--DERAVEPLIKALKDEDWFVRIAAAFALGEI--G--DERAVEPLIKALKDE-DGWVRQSAADALGE--IG 171 (211)
T ss_dssp HHHHHH--C--CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH--C--CGGGHHHHHHHTTCS-SHHHHHHHHHHHHH--HC
T ss_pred HHHHHh--C--cHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--C--CHHHHHHHHHHHcCC-CHHHHHHHHHHHHH--hC
Confidence 999874 3 566788888888444444455778888886 4 567888888877322 23333344445554 45
Q ss_pred CchhHHHHHHHHhcccchhhhhhcHHHHHHHHcC
Q psy6893 797 QLENADDLVRDLCEEKDAILRRSGMYTIAMAYCG 830 (988)
Q Consensus 797 r~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaG 830 (988)
..+....+.+.+ .+++|..|... ..++..++
T Consensus 172 ~~~~~~~L~~~l-~d~~~~vr~~A--~~aL~~~~ 202 (211)
T 3ltm_A 172 GERVRAAMEKLA-ETGTGFARKVA--VNYLETHK 202 (211)
T ss_dssp SHHHHHHHHHHH-HHCCHHHHHHH--HHHHHC--
T ss_pred chhHHHHHHHHH-hCCCHHHHHHH--HHHHHhcC
Confidence 666666666655 46778777774 34444444
No 17
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.22 E-value=0.0028 Score=63.80 Aligned_cols=161 Identities=20% Similarity=0.254 Sum_probs=109.8
Q ss_pred chhhhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcCchhhHHHHHH
Q psy6893 638 AKLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEMVRHGGCL 717 (988)
Q Consensus 638 ~kfsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~~~~ir~gA~L 717 (988)
-+..|+..||.+.. ..++..|..+|. +.++.+|..|+.+||.+.. .+++..|...+ ++++..+|..|+.
T Consensus 30 vr~~A~~~L~~~~~---~~~~~~L~~~l~----~~~~~vr~~a~~~L~~~~~---~~~~~~L~~~l-~d~~~~vr~~a~~ 98 (201)
T 3ltj_A 30 VRRAAAYALGKIGD---ERAVEPLIKALK----DEDAWVRRAAADALGQIGD---ERAVEPLIKAL-KDEDGWVRQSAAV 98 (201)
T ss_dssp HHHHHHHHHHHHCC---GGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCC---GGGHHHHHHHT-TCSSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC---hhHHHHHHHHHc----CCCHHHHHHHHHHHHhhCC---HHHHHHHHHHH-cCCCHHHHHHHHH
Confidence 46677777776653 256777777885 5678999999999998832 23566676666 4467889999999
Q ss_pred hhHhhhcCCCCHHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCC
Q psy6893 718 GLGLAAMGSARDDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQ 797 (988)
Q Consensus 718 GLGla~~Gs~~~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr 797 (988)
+||-. | +++++..|...+..++......|+.++|.+ | +.+++..+++++.+. +..+.+.++.+|+-+ |.
T Consensus 99 aL~~~--~--~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~--~--~~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~--~~ 167 (201)
T 3ltj_A 99 ALGQI--G--DERAVEPLIKALKDEDWFVRIAAAFALGEI--G--DERAVEPLIKALKDE-DGWVRQSAADALGEI--GG 167 (201)
T ss_dssp HHHHH--C--CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH--T--CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHH--CS
T ss_pred HHHHh--C--cHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--C--CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHh--Cc
Confidence 99873 3 566788888888544444455778888876 4 567888888877432 333334455555544 66
Q ss_pred chhHHHHHHHHhcccchhhhhhcH
Q psy6893 798 LENADDLVRDLCEEKDAILRRSGM 821 (988)
Q Consensus 798 ~e~a~~li~~L~~~~dp~~r~~~~ 821 (988)
.+....+.+.+ .++++..|...+
T Consensus 168 ~~~~~~L~~~l-~d~~~~vr~~A~ 190 (201)
T 3ltj_A 168 ERVRAAMEKLA-ETGTGFARKVAV 190 (201)
T ss_dssp HHHHHHHHHHH-HHCCHHHHHHHH
T ss_pred hhHHHHHHHHH-hCCCHHHHHHHH
Confidence 77766666665 557777777643
No 18
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.17 E-value=0.036 Score=63.61 Aligned_cols=103 Identities=12% Similarity=-0.112 Sum_probs=63.5
Q ss_pred HHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch--------HHHHHHHHHhhhcC-chhhHHHHHHhhHhhhcC
Q psy6893 655 TEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--------VINDYLLGQVKDAT-NEMVRHGGCLGLGLAAMG 725 (988)
Q Consensus 655 ~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--------~~~~~Ll~~l~~s~-~~~ir~gA~LGLGla~~G 725 (988)
..++..|-.++. +.++.++.-|+.+|+-+..+... ..+..|...+.+++ ++.++..|+..||-...+
T Consensus 265 ~~~i~~L~~ll~----~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 265 EGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp HHHHHHHHHHTT----CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HhHHHHHHHHHc----CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 468888888885 56778888899999988665421 14556666665533 367888888888876544
Q ss_pred CCCH----------HHHHHHHHhhccCCh-hhHHHHHHHhhcccCCC
Q psy6893 726 SARD----------DIYEQLKFNLYQDDA-VTGEAAGIAMGLVLLGS 761 (988)
Q Consensus 726 s~~~----------dv~~~L~~~l~~D~~-~~~e~AalAlGLI~vGs 761 (988)
.... ..+..|..++..++. .....+..+++-+..|+
T Consensus 341 ~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~ 387 (529)
T 1jdh_A 341 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 387 (529)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred CchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcCh
Confidence 3221 123455555543332 33345556666665543
No 19
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.11 E-value=0.23 Score=61.56 Aligned_cols=203 Identities=14% Similarity=0.108 Sum_probs=102.7
Q ss_pred CCCccchhHHHHHhhhccCCCC-chhHHHHHHhhhh----cCCCchhHHHHHHHHHHHhhccCC--------ChhHHHHH
Q psy6893 310 TSGYYEGGGLYALGLIHANHGA-VINDYLLGQVKDA----TNEDDAVTGEAAGIAMGLVLLGSK--------SESAIQDM 376 (988)
Q Consensus 310 ~~~y~~~GaL~alGli~~g~~~-~~~d~l~~lL~~~----~~~d~~~~~~aA~lglGL~~~Gs~--------~~~~~~~L 376 (988)
-.+.++..+-.++.-++-.-+. ...+....++.++ +...+.....-|.-++..++.|.- .+.+++.|
T Consensus 216 ~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~l 295 (810)
T 3now_A 216 ITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMI 295 (810)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHH
Confidence 3567899999999888766541 1112222222222 233344445556667777777774 34566778
Q ss_pred HHhhhhcchHHHHHHHHHHHHHHhcCChhhHHHHHH-------HHhhcchhhhhccchhHHHHHhhhhhhhccccchhhH
Q psy6893 377 VAYAKETQHEKILRGLAVGISFIMYGQLENADDLVR-------DLCEEKDAILRRSGMYTIAMAYCVSYLYFDLFSDLTY 449 (988)
Q Consensus 377 ~~~~~dt~~E~~~r~lalgl~~v~~g~~e~a~~li~-------~L~~~~d~~lr~~~~~~~~l~l~Lgll~~g~~~e~~l 449 (988)
++.+...+ +...+.....++....+ .+..+.+++ .|+..+++.+|.- -+.+|..
T Consensus 296 i~Ll~s~~-~~~q~~A~~al~~aa~~-~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~------Al~~L~k----------- 356 (810)
T 3now_A 296 LAMATTDD-ELQQRVACECLIAASSK-KDKAKALCEQGVDILKRLYHSKNDGIRVR------ALVGLCK----------- 356 (810)
T ss_dssp HHHHHSSC-HHHHHHHHHHHHHHTTS-HHHHHTTHHHHHHHHHHHTTCSCHHHHHH------HHHHHHH-----------
T ss_pred HHHhCCCC-HHHHHHHHHHHHHHcCC-cHHHHHHHHcCcHHHHHHHcCCCHHHHHH------HHHHHHH-----------
Confidence 88776543 33333334444444333 444443332 2333333333221 1111111
Q ss_pred HhhccchhHHHHHhhhcc----------CCCH-HHHHHHHHHhccC-CCchhhHHHHHHHHHHhhcCccccccccCCCCc
Q psy6893 450 RIVKNRSGMYTIAMAYCG----------SGSN-VATKRLLHVAVSD-VNDDVRREAVTALGFILFRTLFYVAPACTRSPW 517 (988)
Q Consensus 450 ~~~~~~~~~~~~~~AYaG----------TGN~-~~Iq~LLhi~~s~-~~~dvrr~AV~~lg~I~~~~~~~~g~~~~~~~~ 517 (988)
++..| .|.+ ..+..|.+++.++ .++|+|+.||-+|+.+....+.+--+..-..++
T Consensus 357 -------------l~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~I 423 (810)
T 3now_A 357 -------------LGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASI 423 (810)
T ss_dssp -------------HHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHH
T ss_pred -------------hccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchH
Confidence 11111 1222 2244555555554 377899999999999987654321111112457
Q ss_pred hhHHhhccchhhhhhHhh-HHHhhhhccc
Q psy6893 518 PGVISLLDDPMIELKEFS-LKKLNDIVDD 545 (988)
Q Consensus 518 p~ai~lL~~~~~~~~~~~-~~~l~~~~~~ 545 (988)
|.-+.+|..+..+ .-|. ..-|.+++..
T Consensus 424 p~LV~LL~s~d~~-i~~~al~~L~NLt~~ 451 (810)
T 3now_A 424 HALMDLARGGNQS-CLYGVVTTFVNLCNA 451 (810)
T ss_dssp HHHHHHHHTTCGG-GHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCChH-HHHHHHHHHHHHcCC
Confidence 7777777642211 1122 2346677764
No 20
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.04 E-value=0.39 Score=57.39 Aligned_cols=116 Identities=13% Similarity=-0.072 Sum_probs=66.7
Q ss_pred HHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch--------HHHHHHHHHhhhcCc-hhhHHHHHHhhHhhhcCC
Q psy6893 656 EALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--------VINDYLLGQVKDATN-EMVRHGGCLGLGLAAMGS 726 (988)
Q Consensus 656 ~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--------~~~~~Ll~~l~~s~~-~~ir~gA~LGLGla~~Gs 726 (988)
.++..|-..+. +.++.++.-|+.+|+-+..+... ..+..|+..+.++++ +.++..|+..||-.....
T Consensus 263 ~~i~~Lv~lL~----~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~ 338 (644)
T 2z6h_A 263 GLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 338 (644)
T ss_dssp HHHHHHHHHTT----CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS
T ss_pred hHHHHHHHHHc----CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCC
Confidence 56666777775 45677788888888877665421 145566666655433 578888888887764432
Q ss_pred CCH----------HHHHHHHHhhccCC-hhhHHHHHHHhhcccCCCCCH------HHHHHHHHHHH
Q psy6893 727 ARD----------DIYEQLKFNLYQDD-AVTGEAAGIAMGLVLLGSKSE------SAIQDMVAYAK 775 (988)
Q Consensus 727 ~~~----------dv~~~L~~~l~~D~-~~~~e~AalAlGLI~vGs~n~------d~i~~ll~~~~ 775 (988)
... ..+..|..+|..++ ....+.|+-+++-+..++.+. .++..+++++.
T Consensus 339 ~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~ 404 (644)
T 2z6h_A 339 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 404 (644)
T ss_dssp TTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHH
T ss_pred chHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHh
Confidence 221 24456666664332 233445666667665554332 24445555554
No 21
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.96 E-value=0.16 Score=62.57 Aligned_cols=53 Identities=15% Similarity=-0.043 Sum_probs=34.0
Q ss_pred CCCccchhHHHHHhhhccC----CCCchhHHHHHHhhhhcCCCchhHHHHHHHHHHHhhcc
Q psy6893 310 TSGYYEGGGLYALGLIHAN----HGAVINDYLLGQVKDATNEDDAVTGEAAGIAMGLVLLG 366 (988)
Q Consensus 310 ~~~y~~~GaL~alGli~~g----~~~~~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~~~G 366 (988)
.++.++.-+..+++.|... ......+.+.. .+.+++...+++|...||-+.--
T Consensus 102 ~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~----~l~~~~~~~r~~al~~L~~i~~~ 158 (852)
T 4fdd_A 102 SSPLIRATVGILITTIASKGELQNWPDLLPKLCS----LLDSEDYNTCEGAFGALQKICED 158 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHH----HHSCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHH----HHcCCCHHHHHHHHHHHHHHHHH
Confidence 4568888888888877432 22223344444 44455678899999988876543
No 22
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.74 E-value=1.1 Score=57.39 Aligned_cols=230 Identities=11% Similarity=0.081 Sum_probs=109.0
Q ss_pred hhhhhhhcccccCChHHHHHHHhhcCCCCC-CCCCccchhhHHHHHhhhcc--CCc--hHHHHHHHHHhhhcCchhhHHH
Q psy6893 640 LTATASLGVIHRGHETEALAHMQSYLPRET-GPTSGYYEGGGLYALGLIHA--NHG--AVINDYLLGQVKDATNEMVRHG 714 (988)
Q Consensus 640 fsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~-~s~~~~~k~GAL~AlGlI~a--g~~--~~~~~~Ll~~l~~s~~~~ir~g 714 (988)
..++..+|.+..-..+.....+..|+..-. ...++..+..+++++|.+.. ... .+....+...+. +.++.+|..
T Consensus 797 ~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~l~~~~~~~l~-~~~~~Vr~a 875 (1230)
T 1u6g_C 797 YSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFS-SPSEEVKSA 875 (1230)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHHGGG-CSCHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCCCcccccHHHHHHHHhC-CCCHHHHHH
Confidence 344555555533111111255666664211 11344556778788776621 111 234556665553 457788999
Q ss_pred HHHhhHhhhcCCCCHHHHHHHHHhhccCChhhHHHHHHHhhcccCC---CCCHHHHHHHHHHHHhc---ccchhhhHHHH
Q psy6893 715 GCLGLGLAAMGSARDDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLG---SKSESAIQDMVAYAKET---QHEKILRGLAV 788 (988)
Q Consensus 715 A~LGLGla~~Gs~~~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vG---s~n~d~i~~ll~~~~et---q~e~i~R~lal 788 (988)
|..+||..+.|.- ......|+..+.. .....+...-|++-+.-. ..-...+..+...+... .++.+..-++-
T Consensus 876 Aa~aLg~l~~~~~-~~~lp~ll~~l~~-~~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~ 953 (1230)
T 1u6g_C 876 ASYALGSISVGNL-PEYLPFVLQEITS-QPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAE 953 (1230)
T ss_dssp HHHHHHHHHHHTH-HHHHHHHHHHHHS-CGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHH
T ss_pred HHHHhHHHhccCH-HHHHHHHHHHHhc-cchhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHH
Confidence 9999988765532 1233344444422 222222222233333211 11122234444444321 12333335566
Q ss_pred HHHHHhcCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHHhhhhhhhhhhhccCCCchHHHH
Q psy6893 789 GISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAILRRSGMYTIAMAYCGSGSNVATK 868 (988)
Q Consensus 789 gLgLi~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~~~lG~alia~g~~~tgn~~air 868 (988)
++|.+..-..+..-+.+.....+.++..|.. ++.++.|+= ...+.....-++
T Consensus 954 ~lg~l~~~~~~~l~p~l~~~l~~~~~~~R~~--~~~~l~~~~--------------------------~~~~~~~~~~l~ 1005 (1230)
T 1u6g_C 954 CLGKLTLIDPETLLPRLKGYLISGSSYARSS--VVTAVKFTI--------------------------SDHPQPIDPLLK 1005 (1230)
T ss_dssp HHHHHHHSSGGGTHHHHTTTSSSSCHHHHHH--HHHHTGGGC--------------------------CSSCCTHHHHHH
T ss_pred HHhhhhccChHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHH--------------------------ccCchhhHHHHH
Confidence 6776665444443333333334556665643 222333321 111111122233
Q ss_pred Hhhhhh---ccCCChhhhhhHHhhhhhhhhhhhhh
Q psy6893 869 RLLHVA---VSDVNDDVRREAVTALGFILFRKKRT 900 (988)
Q Consensus 869 ~ll~~~---~sd~~~~vrraa~~alg~i~~~npeq 900 (988)
.++..+ ..|++.+||+++..+++-+....|..
T Consensus 1006 ~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 1040 (1230)
T 1u6g_C 1006 NCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSL 1040 (1230)
T ss_dssp HHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHh
Confidence 333222 36788899999999998877776664
No 23
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.64 E-value=0.017 Score=66.98 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=27.3
Q ss_pred HHHHhhhhhccCCChhhhhhHHhhhhhhhhhhhhhh
Q psy6893 866 ATKRLLHVAVSDVNDDVRREAVTALGFILFRKKRTR 901 (988)
Q Consensus 866 air~ll~~~~sd~~~~vrraa~~alg~i~~~npeq~ 901 (988)
++..|++++.+..++.+|+.|+.+++-+...+++..
T Consensus 329 ~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~ 364 (528)
T 4b8j_A 329 ALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQI 364 (528)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHH
Confidence 466677777654488999999999999887666544
No 24
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.61 E-value=1.5 Score=56.27 Aligned_cols=71 Identities=10% Similarity=0.093 Sum_probs=49.3
Q ss_pred HHHHHHhcccCCCCCCCCCccchhHHHHHhhhccCCCCchhHHHHHHhhhhcCCCchhHHHHHHHHHHHhhccCC
Q psy6893 294 EALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEDDAVTGEAAGIAMGLVLLGSK 368 (988)
Q Consensus 294 ~gl~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~~~~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~~~Gs~ 368 (988)
.-+..+-++|.. .++.++..|+.++|-+..+.+....++++..|-+.+.+++...|.+|+.+||-+....+
T Consensus 48 ~il~~Ll~~L~d----~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~ 118 (1230)
T 1u6g_C 48 KVVKMILKLLED----KNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELP 118 (1230)
T ss_dssp HHHHHHHHHTTC----SSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCC
Confidence 445556667764 47889999999998887665543456666666666555566779999999987764444
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.55 E-value=0.015 Score=65.19 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=27.1
Q ss_pred HHHHhhhhhccCCChhhhhhHHhhhhhhhhhhhhhh
Q psy6893 866 ATKRLLHVAVSDVNDDVRREAVTALGFILFRKKRTR 901 (988)
Q Consensus 866 air~ll~~~~sd~~~~vrraa~~alg~i~~~npeq~ 901 (988)
++..|..++.+ +++.+|+.+..+++-+...+++..
T Consensus 277 ~l~~L~~ll~~-~~~~vr~~a~~~L~~l~~~~~~~~ 311 (450)
T 2jdq_A 277 ALQSLLHLLSS-PKESIKKEACWTISNITAGNRAQI 311 (450)
T ss_dssp HHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHH
Confidence 66677777654 688999999999999987666544
No 26
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.35 E-value=2.2 Score=51.89 Aligned_cols=88 Identities=18% Similarity=0.124 Sum_probs=56.8
Q ss_pred CCccchhHHHHHhhhccCCCCchhHHHHHHhhhhcCCCchhHHHHHHHHHHHhhccCCCh-------hHHHHHHHhhhhc
Q psy6893 311 SGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEDDAVTGEAAGIAMGLVLLGSKSE-------SAIQDMVAYAKET 383 (988)
Q Consensus 311 ~~y~~~GaL~alGli~~g~~~~~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~~~Gs~~~-------~~~~~L~~~~~dt 383 (988)
+..++-.|..+++.+....+....+.++..|...+.+.++..+.+|..++|.+.-|...+ .++..|++.+.|.
T Consensus 341 ~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~ 420 (876)
T 1qgr_A 341 DWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456778888888887665554456677777777776778999999999999877666522 2334444444444
Q ss_pred chHHHHHHHHHHHHHH
Q psy6893 384 QHEKILRGLAVGISFI 399 (988)
Q Consensus 384 ~~E~~~r~lalgl~~v 399 (988)
. ..++...+..++-+
T Consensus 421 ~-~~vr~~a~~~l~~~ 435 (876)
T 1qgr_A 421 S-VVVRDTAAWTVGRI 435 (876)
T ss_dssp S-HHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHH
Confidence 3 33444444444444
No 27
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=96.32 E-value=0.14 Score=63.55 Aligned_cols=198 Identities=16% Similarity=0.110 Sum_probs=106.9
Q ss_pred hhhhhHHHHHHHhhhccCCc--ccccc---cc-hhHHHhhccchhhHHhhhccceecCChHHHHHHHhcccCCCCCCCCC
Q psy6893 239 SICHTATIIANAFMHSGTTS--DQFLR---DN-LEWLARATNWAKLTATASLGVIHRGHETEALAHMQSYLPRETGPTSG 312 (988)
Q Consensus 239 s~~~~A~~~~Naf~naG~~~--D~fl~---~n-~~Wl~k~~~~~~~sAtASLG~Ih~~~~~~gl~~l~~yL~s~~~~~~~ 312 (988)
.+.|.+...+--+=+.++-. |.|-. +. ..|+.+...-++.-|+..+..|..+.++.+-.++..
T Consensus 220 ~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~----------- 288 (810)
T 3now_A 220 SSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAR----------- 288 (810)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhc-----------
Confidence 44566655555555554311 22211 01 148888888889999999999998888877666521
Q ss_pred ccchhHHHHHhhhccCCCCchhHHHHHHhhhhcCCCchhHHHHHHHHHHHhhccCCChh-HH----HHHHHhhhhcchHH
Q psy6893 313 YYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEDDAVTGEAAGIAMGLVLLGSKSES-AI----QDMVAYAKETQHEK 387 (988)
Q Consensus 313 y~~~GaL~alGli~~g~~~~~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~~~Gs~~~~-~~----~~L~~~~~dt~~E~ 387 (988)
.| ..+.++.++. +++...++.|.-++|.+-.+..+.+ ++ ..|..++.+ +.+.
T Consensus 289 ---~G---------------~v~~li~Ll~----s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s-~~~~ 345 (810)
T 3now_A 289 ---EG---------------ILQMILAMAT----TDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHS-KNDG 345 (810)
T ss_dssp ---TT---------------HHHHHHHHHH----SSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTC-SCHH
T ss_pred ---cc---------------hHHHHHHHhC----CCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcC-CCHH
Confidence 11 3344445443 3456777777777776322211111 11 334444442 2233
Q ss_pred HHHHHHHHHHHHhc--C-C-----------hhhHHHHHHHHhhcc-hhhhhccchhHHHHHhhhhhhhccccchhhHHhh
Q psy6893 388 ILRGLAVGISFIMY--G-Q-----------LENADDLVRDLCEEK-DAILRRSGMYTIAMAYCVSYLYFDLFSDLTYRIV 452 (988)
Q Consensus 388 ~~r~lalgl~~v~~--g-~-----------~e~a~~li~~L~~~~-d~~lr~~~~~~~~l~l~Lgll~~g~~~e~~l~~~ 452 (988)
+..-.+.+|..++. + + ++.+..++..|.... |+..+.-+
T Consensus 346 vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~A-------------------------- 399 (810)
T 3now_A 346 IRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWA-------------------------- 399 (810)
T ss_dssp HHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHH--------------------------
T ss_pred HHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHH--------------------------
Confidence 33333446666653 1 1 122334444444331 33333311
Q ss_pred ccchhHHHHHhhhccCC---------CHHHHHHHHHHhccCCCchhhHHHHHHHHHHhhcC
Q psy6893 453 KNRSGMYTIAMAYCGSG---------SNVATKRLLHVAVSDVNDDVRREAVTALGFILFRT 504 (988)
Q Consensus 453 ~~~~~~~~~~~AYaGTG---------N~~~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~~~~ 504 (988)
+++++|.-.+ +...|+.|+.++.+ .+..++..|+..|+-|.-+.
T Consensus 400 -------veaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s-~d~~i~~~al~~L~NLt~~~ 452 (810)
T 3now_A 400 -------ADGLAYLTLDAECKEKLIEDKASIHALMDLARG-GNQSCLYGVVTTFVNLCNAY 452 (810)
T ss_dssp -------HHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHTTCS
T ss_pred -------HHHHHHHhCCcHHHHHHHHccchHHHHHHHhCC-CChHHHHHHHHHHHHHcCCc
Confidence 3333443322 34578888888865 45678889999999998754
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.30 E-value=0.099 Score=53.36 Aligned_cols=209 Identities=19% Similarity=0.163 Sum_probs=115.4
Q ss_pred HHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch--------HHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCC
Q psy6893 657 ALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--------VINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSAR 728 (988)
Q Consensus 657 ~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--------~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~ 728 (988)
++..|-.+|. ++++.++.-|+.+|+.+..+... .++..|...+. +++..++..|+..|+-...+ +
T Consensus 3 ~i~~L~~~L~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~--~ 75 (252)
T 4hxt_A 3 DVEKLVKLLT----STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASG--P 75 (252)
T ss_dssp HHHHHHHHTT----CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTS--C
T ss_pred cHHHHHHHHc----CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcC--C
Confidence 3455556664 34567777888888877665531 14566665554 34567788888888765333 2
Q ss_pred HH---------HHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHH---------HHHHHHHHHHhcccchhhhHHHHHH
Q psy6893 729 DD---------IYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSES---------AIQDMVAYAKETQHEKILRGLAVGI 790 (988)
Q Consensus 729 ~d---------v~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d---------~i~~ll~~~~etq~e~i~R~lalgL 790 (988)
++ ++..|..++..++....+.|+.+++-+.. .+.+ ++..+++++.+ .+..+.+..+-.|
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L 152 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS--GPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARAL 152 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 22 45566666654444445566667666633 2333 34555555532 2344555555566
Q ss_pred HHHhcCCchh---------HHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHHhhhhhhhhhhhccCC
Q psy6893 791 SFIMYGQLEN---------ADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAILRRSGMYTIAMAYCGS 861 (988)
Q Consensus 791 gLi~~Gr~e~---------a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~~~lG~alia~g~~~t 861 (988)
+-+..+..+. +..+++.|. ++++..|...+.+++ -+..++....+.+
T Consensus 153 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~--~l~~~~~~~~~~l--------------------- 208 (252)
T 4hxt_A 153 ANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALA--NIASGPTSAIKAI--------------------- 208 (252)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHH--HHTTSBHHHHHHH---------------------
T ss_pred HHHHcCCHHHHHHHHHCcCHHHHHHHHC-CCCHHHHHHHHHHHH--HHHcCCHHHHHHH---------------------
Confidence 6565554432 344444444 344444444333222 2222222111111
Q ss_pred CchHHHHHhhhhhccCCChhhhhhHHhhhhhhhhhhhhh
Q psy6893 862 GSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRKKRT 900 (988)
Q Consensus 862 gn~~air~ll~~~~sd~~~~vrraa~~alg~i~~~npeq 900 (988)
....++..|++++.+ +++++|+.|..+++-+....+..
T Consensus 209 ~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 209 VDAGGVEVLQKLLTS-TDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHCCCHHHHHHHHCC-CcHHHHHHHHHHHHHHHcCCCcc
Confidence 113367778777754 58899999999998888766543
No 29
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.07 E-value=0.3 Score=56.87 Aligned_cols=213 Identities=15% Similarity=0.124 Sum_probs=115.1
Q ss_pred HHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch--------HHHHHHHHHhhhcCch----hhHHHHHHhhHhhhc
Q psy6893 657 ALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--------VINDYLLGQVKDATNE----MVRHGGCLGLGLAAM 724 (988)
Q Consensus 657 ~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--------~~~~~Ll~~l~~s~~~----~ir~gA~LGLGla~~ 724 (988)
++..|-.+|. +.++.++--|+.+||-|...... .++..|+..+.....+ .+...++..|.-...
T Consensus 144 aIp~Lv~lL~----s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 219 (510)
T 3ul1_B 144 AIPAFISLLA----SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219 (510)
T ss_dssp HHHHHHHHTT----CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHc----CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence 5667777885 56788999999999988654321 1345566665443221 233344555544444
Q ss_pred CCCC-------HHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHH---------HHHHHHHHHhcccchhhhHHHH
Q psy6893 725 GSAR-------DDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESA---------IQDMVAYAKETQHEKILRGLAV 788 (988)
Q Consensus 725 Gs~~-------~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~---------i~~ll~~~~etq~e~i~R~lal 788 (988)
+... ..++..|..++.+++......|+.+++-+--+ +.+. +..+++++. ..+..+.+..+.
T Consensus 220 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~--~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~al~ 296 (510)
T 3ul1_B 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PNERIEMVVKKGVVPQLVKLLG-ATELPIVTPALR 296 (510)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--CHHHHHHHHTTTCHHHHHHHHT-CSCHHHHHHHHH
T ss_pred cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--hhhhHHHHHhcccchhhhhhhc-CCChhhhhHHHH
Confidence 3321 12344455555444444445566666655333 3332 344555553 334556677777
Q ss_pred HHHHHhcCCchhHHHHHH--------HHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHHhhhhhhhhhhhccC
Q psy6893 789 GISFIMYGQLENADDLVR--------DLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAILRRSGMYTIAMAYCG 860 (988)
Q Consensus 789 gLgLi~~Gr~e~a~~li~--------~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~~~lG~alia~g~~~ 860 (988)
.|+-+..+..+....+++ .|...+++-.|..++++ ++.+..|+...++.+.
T Consensus 297 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~a--L~nl~a~~~~~~~~v~------------------- 355 (510)
T 3ul1_B 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT--MSNITAGRQDQIQQVV------------------- 355 (510)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHH--HHHHTTSCHHHHHHHH-------------------
T ss_pred HHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHH--HHHHHcCcHHHHHHHH-------------------
Confidence 787777777666555554 12233344444443333 3333334432222111
Q ss_pred CCchHHHHHhhhhhccCCChhhhhhHHhhhhhhhhh-hhhh
Q psy6893 861 SGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFR-KKRT 900 (988)
Q Consensus 861 tgn~~air~ll~~~~sd~~~~vrraa~~alg~i~~~-npeq 900 (988)
+..++..|++++.+ .+.++|+.|+.+++-+... ++++
T Consensus 356 --~~g~i~~Lv~lL~~-~~~~v~~~Aa~aL~Nl~~~~~~~~ 393 (510)
T 3ul1_B 356 --NHGLVPFLVGVLSK-ADFKTQKEAAWAITNYTSGGTVEQ 393 (510)
T ss_dssp --HTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCCHHH
T ss_pred --hcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHccCCHHH
Confidence 12356677777655 5889999999888765543 4443
No 30
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.03 E-value=0.96 Score=54.05 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=47.1
Q ss_pred hHHhhhccceecCCh-HHHHHHHhcccCCCCCCCCCccchhHHHHHhhhccCCCCchhHHHHHHhhhhcCCCchhHHHHH
Q psy6893 278 LTATASLGVIHRGHE-TEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEDDAVTGEAA 356 (988)
Q Consensus 278 ~sAtASLG~Ih~~~~-~~gl~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~~~~~d~l~~lL~~~~~~d~~~~~~aA 356 (988)
-.|.-+||.|.--+. +.-+..+.++|-+ +++|++--|+++++-++...+. ....++..|.+.+...++.+..+|
T Consensus 125 ~lAL~~L~~i~~~~~~~~l~~~l~~~L~~----~~~~VRk~A~~al~~l~~~~p~-~v~~~~~~l~~lL~D~d~~V~~~A 199 (618)
T 1w63_A 125 GLALCTLGCMGSSEMCRDLAGEVEKLLKT----SNSYLRKKAALCAVHVIRKVPE-LMEMFLPATKNLLNEKNHGVLHTS 199 (618)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHS----CCHHHHHHHHHHHHHHHHHCGG-GGGGGGGGTTTSTTCCCHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHChH-HHHHHHHHHHHHhCCCCHhHHHHH
Confidence 345555555542111 1124555566654 4678888888888777765554 333444555555554556666666
Q ss_pred HHHHHHhhccCCCh
Q psy6893 357 GIAMGLVLLGSKSE 370 (988)
Q Consensus 357 ~lglGL~~~Gs~~~ 370 (988)
..+|+- ++..+.
T Consensus 200 l~~L~~--i~~~~~ 211 (618)
T 1w63_A 200 VVLLTE--MCERSP 211 (618)
T ss_dssp HHHHHH--HCCSHH
T ss_pred HHHHHH--HHHhCh
Confidence 666653 344443
No 31
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.99 E-value=1.5 Score=50.94 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=34.4
Q ss_pred HHHHHHHHhccCCCchhhHHHHHHHHHHhhcCccccccccCCCCchhHHhhccch
Q psy6893 473 ATKRLLHVAVSDVNDDVRREAVTALGFILFRTLFYVAPACTRSPWPGVISLLDDP 527 (988)
Q Consensus 473 ~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~~~~~~~~g~~~~~~~~p~ai~lL~~~ 527 (988)
+|..|++++. +.++++|..|+-+||-|+...+-.--......++|..+.+|..+
T Consensus 144 aIp~Lv~lL~-s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~ 197 (510)
T 3ul1_B 144 AIPAFISLLA-SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVP 197 (510)
T ss_dssp HHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSS
T ss_pred CHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhc
Confidence 4667777765 46778999999999999875431000001123567777777654
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.95 E-value=0.26 Score=60.64 Aligned_cols=216 Identities=11% Similarity=0.036 Sum_probs=102.8
Q ss_pred HHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch--------HHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCC
Q psy6893 657 ALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--------VINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSAR 728 (988)
Q Consensus 657 ~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--------~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~ 728 (988)
++..|-..+. +++...+.-++.+|..+..++.. ..+..|...+.+...+..+..++-.|........+
T Consensus 277 ~v~~Lv~lL~----~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~ 352 (780)
T 2z6g_A 277 GLQKMVALLN----KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 352 (780)
T ss_dssp HHHHHHHGGG----CCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTH
T ss_pred CHHHHHHHHh----cCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHH
Confidence 5555666664 23444555565566655443311 23555666665554444444444444333322222
Q ss_pred HH------HHHHHHHhhccCChhhHHHHHHHhhcccCCC----CCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCc
Q psy6893 729 DD------IYEQLKFNLYQDDAVTGEAAGIAMGLVLLGS----KSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQL 798 (988)
Q Consensus 729 ~d------v~~~L~~~l~~D~~~~~e~AalAlGLI~vGs----~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~ 798 (988)
.. ++..|..++...+....+.|+.+++-+.-+. +...++..+++++.. .+..+.+.++..|+-+..+..
T Consensus 353 ~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~-~d~~vr~~A~~aL~~L~~~~~ 431 (780)
T 2z6g_A 353 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNY 431 (780)
T ss_dssp HHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCH
Confidence 22 2345555553333223333444444332221 234567777776643 334444555556665655543
Q ss_pred ---------hhHHHHHHHHhcccch-hhhhhcHHHHHHHHcCCCChhH--HHHHHHHHHHhhhhhhhhhhhccCCCchHH
Q psy6893 799 ---------ENADDLVRDLCEEKDA-ILRRSGMYTIAMAYCGSGSNVA--TKRLLHDAILRRSGMYTIAMAYCGSGSNVA 866 (988)
Q Consensus 799 ---------e~a~~li~~L~~~~dp-~~r~~~~~~lslAyaGtGnvl~--iq~lL~~~~~~~lG~alia~g~~~tgn~~a 866 (988)
..+..+++.|....++ -.+...+. +++.+..++... .|..+ ....+
T Consensus 432 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~--aL~nL~~~~~~~~~~~~~v--------------------~~~~~ 489 (780)
T 2z6g_A 432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC--ALRHLTSRHQDAEMAQNAV--------------------RLHYG 489 (780)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHH--HHHHTTSSSTTHHHHHHHH--------------------HHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHH--HHHHHHhcCchHHHHHHHH--------------------HHcCC
Confidence 2355566665543332 33333222 222222221100 00000 01224
Q ss_pred HHHhhhhhccCCChhhhhhHHhhhhhhhhhhhh
Q psy6893 867 TKRLLHVAVSDVNDDVRREAVTALGFILFRKKR 899 (988)
Q Consensus 867 ir~ll~~~~sd~~~~vrraa~~alg~i~~~npe 899 (988)
+..|+.++.++.++.+|++++.+++-+...++.
T Consensus 490 l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~ 522 (780)
T 2z6g_A 490 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN 522 (780)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHH
Confidence 667777776654458999999999888764433
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=95.82 E-value=0.087 Score=54.32 Aligned_cols=197 Identities=17% Similarity=0.158 Sum_probs=103.9
Q ss_pred CCCccchhhHHHHHhhhccCCch--------HHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCC-------HHHHHHH
Q psy6893 671 PTSGYYEGGGLYALGLIHANHGA--------VINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSAR-------DDIYEQL 735 (988)
Q Consensus 671 s~~~~~k~GAL~AlGlI~ag~~~--------~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~-------~dv~~~L 735 (988)
++++.++.-|+.+|.-+-+.... .++..|...+.+ ++..++..|+..|+-...++.. ..++..|
T Consensus 23 s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 101 (252)
T 4db8_A 23 SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 101 (252)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH
Confidence 45566677777777432222110 145566655543 4467788888888765443211 1145666
Q ss_pred HHhhccCChhhHHHHHHHhhcccCCCCCH-------HHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCch---------
Q psy6893 736 KFNLYQDDAVTGEAAGIAMGLVLLGSKSE-------SAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLE--------- 799 (988)
Q Consensus 736 ~~~l~~D~~~~~e~AalAlGLI~vGs~n~-------d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e--------- 799 (988)
..++..++....+.|+.+++-+-.+..+. .++..+++++.+ .+..+.+..+..|+-+..+..+
T Consensus 102 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 180 (252)
T 4db8_A 102 VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAG 180 (252)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHCC
Confidence 66665544444556777777765443332 234555555532 2344445555566666554433
Q ss_pred hHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHHhhhhhhhhhhhccCCCchHHHHHhhhhhccCCC
Q psy6893 800 NADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAILRRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVN 879 (988)
Q Consensus 800 ~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~~~lG~alia~g~~~tgn~~air~ll~~~~sd~~ 879 (988)
.+..+++.|.. +++..+...+.++ ..+..+++...+.+ ....++..|.+++.+ ++
T Consensus 181 ~i~~L~~ll~~-~~~~v~~~a~~~L--~~l~~~~~~~~~~~---------------------~~~g~i~~L~~ll~~-~~ 235 (252)
T 4db8_A 181 ALPALVQLLSS-PNEQILQEALWAL--SNIASGGNEQKQAV---------------------KEAGALEKLEQLQSH-EN 235 (252)
T ss_dssp CHHHHHHGGGC-SSHHHHHHHHHHH--HHHTTSCHHHHHHH---------------------HHTTHHHHHHTTTTC-SS
T ss_pred CHHHHHHHHCC-CCHHHHHHHHHHH--HHHhcCCHHHHHHH---------------------HHCCcHHHHHHHhCC-CC
Confidence 24455555543 3444444433322 22222332111111 112367778887755 58
Q ss_pred hhhhhhHHhhhhhhh
Q psy6893 880 DDVRREAVTALGFIL 894 (988)
Q Consensus 880 ~~vrraa~~alg~i~ 894 (988)
+++|+.|..+|+-+.
T Consensus 236 ~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 236 EKIQKEAQEALEKLQ 250 (252)
T ss_dssp SHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHh
Confidence 899999998887654
No 34
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=95.67 E-value=3.7 Score=50.40 Aligned_cols=210 Identities=13% Similarity=0.090 Sum_probs=105.0
Q ss_pred HHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch-------HHHHHHHHHhhhcCchhhHHHHHHhhHhhhc----
Q psy6893 656 EALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA-------VINDYLLGQVKDATNEMVRHGGCLGLGLAAM---- 724 (988)
Q Consensus 656 ~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~-------~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~---- 724 (988)
..+..|-..+. ..++.+|..|+-+|+.+....+. .++.+++..+ .+.++.+|..|+..+.-..-
T Consensus 215 ~~l~~l~~~~~----d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~vr~~a~e~l~~l~~~~~~ 289 (852)
T 4fdd_A 215 SFIENLFALAG----DEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRT-QDQDENVALEACEFWLTLAEQPIC 289 (852)
T ss_dssp HHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHTTSTTH
T ss_pred HHHHHHHHHcC----CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHc-cCCcHHHHHHHHHHHHHHhcchhH
Confidence 34444444443 45678899999999887554432 2455555444 34567889988877654321
Q ss_pred ----CCCCHHHHHHHHHhhc----------cC-----------Ch-hhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhc-
Q psy6893 725 ----GSARDDIYEQLKFNLY----------QD-----------DA-VTGEAAGIAMGLVLLGSKSESAIQDMVAYAKET- 777 (988)
Q Consensus 725 ----Gs~~~dv~~~L~~~l~----------~D-----------~~-~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~et- 777 (988)
...-..++..|++.+. .| +. .....|+-+++.+.-.-+ .+++..+++++.+.
T Consensus 290 ~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l 368 (852)
T 4fdd_A 290 KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELL 368 (852)
T ss_dssp HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHh
Confidence 1111233334444331 22 00 113345555554432222 35556666655432
Q ss_pred --ccchhhhHHHHHHHHHhcCCchhH----HHHH---HHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHHhh
Q psy6893 778 --QHEKILRGLAVGISFIMYGQLENA----DDLV---RDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAILRR 848 (988)
Q Consensus 778 --q~e~i~R~lalgLgLi~~Gr~e~a----~~li---~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~~~ 848 (988)
.+.......+.+||-+.-|..+.. ..++ -.+..+++|..|...+++++ .++
T Consensus 369 ~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~--~l~------------------ 428 (852)
T 4fdd_A 369 FHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLS--RYA------------------ 428 (852)
T ss_dssp TCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHH--HTH------------------
T ss_pred cCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HHH------------------
Confidence 222233345556776665554321 1122 22224556666665554443 111
Q ss_pred hhhhhhhhhcc--CCCchHHHHHhhhhhccCCChhhhhhHHhhhhhhhhhh
Q psy6893 849 SGMYTIAMAYC--GSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRK 897 (988)
Q Consensus 849 lG~alia~g~~--~tgn~~air~ll~~~~sd~~~~vrraa~~alg~i~~~n 897 (988)
-.++.. ..--...+..|++.+. |.+..||.+++.+++.+....
T Consensus 429 -----~~~~~~~~~~~~~~ll~~L~~~L~-d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 429 -----HWVVSQPPDTYLKPLMTELLKRIL-DSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp -----HHHHHSCTTTTHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHH
T ss_pred -----HHhccchHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHh
Confidence 001110 0122345666666543 568899999999998877543
No 35
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=95.67 E-value=0.051 Score=63.17 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=26.2
Q ss_pred HHHHhhhhhccCCChhhhhhHHhhhhhhhhhhhhhh
Q psy6893 866 ATKRLLHVAVSDVNDDVRREAVTALGFILFRKKRTR 901 (988)
Q Consensus 866 air~ll~~~~sd~~~~vrraa~~alg~i~~~npeq~ 901 (988)
++..|+.++.+ ++..+|..|+.+++-+...+++..
T Consensus 342 ~l~~L~~lL~~-~~~~vr~~A~~aL~~l~~~~~~~~ 376 (530)
T 1wa5_B 342 VLPALRLLLSS-PKENIKKEACWTISNITAGNTEQI 376 (530)
T ss_dssp HHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred hHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHH
Confidence 56667677655 478999999999999887666544
No 36
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.50 E-value=0.44 Score=55.57 Aligned_cols=129 Identities=12% Similarity=0.095 Sum_probs=74.4
Q ss_pred HHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch--------HHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCC
Q psy6893 655 TEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--------VINDYLLGQVKDATNEMVRHGGCLGLGLAAMGS 726 (988)
Q Consensus 655 ~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--------~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs 726 (988)
..++..|..++. ++++.++.-|+.+|+-+..+... .++..|...+ .+.+..++..|+-.||-...|+
T Consensus 250 ~~~lp~L~~LL~----~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~ 324 (529)
T 3tpo_A 250 EQILPTLVRLLH----HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPALRAIGNIVTGT 324 (529)
T ss_dssp HHHHHHHHHHTT----SSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHHHhc----CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHh-cCCChhHHHHHHHHHHHHHccc
Confidence 356677777775 56677888888888877665432 1244555544 4556778888888888665443
Q ss_pred CCH-------HHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHH---------HHHHHHHHHhcccchhhhHHHHHH
Q psy6893 727 ARD-------DIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESA---------IQDMVAYAKETQHEKILRGLAVGI 790 (988)
Q Consensus 727 ~~~-------dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~---------i~~ll~~~~etq~e~i~R~lalgL 790 (988)
... .++..|..++.+.+....+.|+.+++-+..| +.+. +..++.++. +.+..+.+..+.+|
T Consensus 325 ~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~--~~~~~~~v~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL 401 (529)
T 3tpo_A 325 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG--RQDQIQQVVNHGLVPFLVGVLS-KADFKTQKAAAWAI 401 (529)
T ss_dssp HHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHHHH-SSCHHHHHHHHHHH
T ss_pred hHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcc--cHHHHHHHHhcCcHHHHHHHhc-CCCHHHHHHHHHHH
Confidence 211 1223455556444444455678888877555 4443 333444443 23344445555555
Q ss_pred H
Q psy6893 791 S 791 (988)
Q Consensus 791 g 791 (988)
+
T Consensus 402 ~ 402 (529)
T 3tpo_A 402 T 402 (529)
T ss_dssp H
T ss_pred H
Confidence 4
No 37
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.44 E-value=0.0077 Score=57.04 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=63.5
Q ss_pred cCCCchhHHHHHHHHHHHhhccCCChhHHHHHHHhhhhcchHHHHHHHHHHHHHHhcCChhhHHHHHHHHhhcchhhhhc
Q psy6893 345 TNEDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRR 424 (988)
Q Consensus 345 ~~~d~~~~~~aA~lglGL~~~Gs~~~~~~~~L~~~~~dt~~E~~~r~lalgl~~v~~g~~e~a~~li~~L~~~~d~~lr~ 424 (988)
+.++++..+..|+.+|| ..|... +..|+..+.|.+ ..+++..+.+|+.+ |+.+.+..+++.| .++++..|.
T Consensus 21 L~~~~~~vR~~A~~~L~--~~~~~~---~~~L~~~L~d~~-~~vR~~A~~aL~~~--~~~~a~~~L~~~L-~d~~~~VR~ 91 (131)
T 1te4_A 21 MADENKWVRRDVSTALS--RMGDEA---FEPLLESLSNED-WRIRGAAAWIIGNF--QDERAVEPLIKLL-EDDSGFVRS 91 (131)
T ss_dssp CCSSCCCSSSSCCSSTT--SCSSTT---HHHHHHGGGCSC-HHHHHHHHHHHGGG--CSHHHHHHHHHHH-HHCCTHHHH
T ss_pred hcCCCHHHHHHHHHHHH--HhCchH---HHHHHHHHcCCC-HHHHHHHHHHHHhc--CCHHHHHHHHHHH-cCCCHHHHH
Confidence 33445556666665555 334332 466666666533 23333334444433 3566666777655 556666666
Q ss_pred cchhHHHHHhhhhhhhccccchhhHHhhccchhHHHHHhhhccCCCHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Q psy6893 425 SGMYTIAMAYCVSYLYFDLFSDLTYRIVKNRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFI 500 (988)
Q Consensus 425 ~~~~~~~l~l~Lgll~~g~~~e~~l~~~~~~~~~~~~~~AYaGTGN~~~Iq~LLhi~~s~~~~dvrr~AV~~lg~I 500 (988)
.+ +.+++..| +..++..|+..+ .+.+..||..|+.+|+-|
T Consensus 92 ~A---------------------------------~~aL~~~~--~~~a~~~L~~~l-~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 92 GA---------------------------------ARSLEQIG--GERVRAAMEKLA-ETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HH---------------------------------HHHHHHHC--SHHHHHHHHHHT-TSCCTHHHHHHHHHGGGC
T ss_pred HH---------------------------------HHHHHHhC--cHHHHHHHHHHH-hCCCHHHHHHHHHHHHhC
Confidence 32 34444444 567777777766 466777888888887643
No 38
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=95.32 E-value=5.4 Score=45.61 Aligned_cols=217 Identities=9% Similarity=0.001 Sum_probs=102.0
Q ss_pred ccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhh--ccCCchHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcC
Q psy6893 648 VIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLI--HANHGAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMG 725 (988)
Q Consensus 648 ~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI--~ag~~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~G 725 (988)
....|+.++++..+...+.. ..... -+.+.+|.+ ..|...++...+...+...++. .. +...+|.+|.-
T Consensus 349 ~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~--~~~~l~~~~~~ 419 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLVDR----HPEKA--VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF-GP--AWIGFAHSFAI 419 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHH----CTTSH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH--HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhh----CcccH--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HH--HHHHHHHHHHH
Confidence 34567777788777766521 11122 233333333 3344444555554333222221 11 22233333333
Q ss_pred CCC-HHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHH
Q psy6893 726 SAR-DDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDL 804 (988)
Q Consensus 726 s~~-~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~l 804 (988)
.++ +++++.+...+..+.... .+-..+|.++.-.|+.+-...+++-+.+...+...-...++..+...|+.+++..+
T Consensus 420 ~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 497 (597)
T 2xpi_A 420 EGEHDQAISAYTTAARLFQGTH--LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINH 497 (597)
T ss_dssp HTCHHHHHHHHHHHHHTTTTCS--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCccch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 333 233444443332222111 12223333333334544444433333222222223344555556667787777777
Q ss_pred HHHHhccc-----chhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHH---------hhhhhhhhhhhccCCCchHHHHHh
Q psy6893 805 VRDLCEEK-----DAILRRSGMYTIAMAYCGSGSNVATKRLLHDAIL---------RRSGMYTIAMAYCGSGSNVATKRL 870 (988)
Q Consensus 805 i~~L~~~~-----dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~---------~~lG~alia~g~~~tgn~~air~l 870 (988)
++.+.... +|.........++..|+-.|+.....+.+..+.. ..+|.++...|+- +.|++.+
T Consensus 498 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~----~~A~~~~ 573 (597)
T 2xpi_A 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP----GLAITHL 573 (597)
T ss_dssp HHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCH----HHHHHHH
T ss_pred HHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH----HHHHHHH
Confidence 77665431 3332223345666677777787777776666553 3455555555554 5556555
Q ss_pred hhhhccCCC
Q psy6893 871 LHVAVSDVN 879 (988)
Q Consensus 871 l~~~~sd~~ 879 (988)
-..+..+|+
T Consensus 574 ~~~l~~~p~ 582 (597)
T 2xpi_A 574 HESLAISPN 582 (597)
T ss_dssp HHHHHHCTT
T ss_pred HHHHhcCCC
Confidence 555555553
No 39
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.26 E-value=0.04 Score=52.07 Aligned_cols=103 Identities=13% Similarity=0.154 Sum_probs=59.2
Q ss_pred chhhhhhhhcccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchHHHHHHHHHhhhcCchhhHHHHHH
Q psy6893 638 AKLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEMVRHGGCL 717 (988)
Q Consensus 638 ~kfsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s~~~~ir~gA~L 717 (988)
-+..|+..||.+.. . +...|...|. +.++.+|..|+.+||.+. . ..++..|...+. +++..+|..|+.
T Consensus 28 vR~~A~~~L~~~~~--~--~~~~L~~~L~----d~~~~vR~~A~~aL~~~~--~-~~a~~~L~~~L~-d~~~~VR~~A~~ 95 (131)
T 1te4_A 28 VRRDVSTALSRMGD--E--AFEPLLESLS----NEDWRIRGAAAWIIGNFQ--D-ERAVEPLIKLLE-DDSGFVRSGAAR 95 (131)
T ss_dssp SSSSCCSSTTSCSS--T--THHHHHHGGG----CSCHHHHHHHHHHHGGGC--S-HHHHHHHHHHHH-HCCTHHHHHHHH
T ss_pred HHHHHHHHHHHhCc--h--HHHHHHHHHc----CCCHHHHHHHHHHHHhcC--C-HHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 45666666665543 2 2355555664 445677777777777762 2 234555555553 345677777777
Q ss_pred hhHhhhcCCCCHHHHHHHHHhhccCChhhHHHHHHHhhc
Q psy6893 718 GLGLAAMGSARDDIYEQLKFNLYQDDAVTGEAAGIAMGL 756 (988)
Q Consensus 718 GLGla~~Gs~~~dv~~~L~~~l~~D~~~~~e~AalAlGL 756 (988)
+||.. | ++++...|...+..++......|+.+++.
T Consensus 96 aL~~~--~--~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 96 SLEQI--G--GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHH--C--SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHh--C--cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 77763 3 56666777766643233334456666654
No 40
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.23 E-value=1.9 Score=51.30 Aligned_cols=33 Identities=3% Similarity=-0.035 Sum_probs=24.4
Q ss_pred HHHHhhhhhccCCChhhhhhHHhhhhhhhhhhh
Q psy6893 866 ATKRLLHVAVSDVNDDVRREAVTALGFILFRKK 898 (988)
Q Consensus 866 air~ll~~~~sd~~~~vrraa~~alg~i~~~np 898 (988)
++..|.+++.++.++.++++++.+++-+...+.
T Consensus 353 ~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~ 385 (644)
T 2z6h_A 353 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 385 (644)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred ChHHHHHHhCccCchHHHHHHHHHHHHHccCHH
Confidence 577777887765456899999988887776443
No 41
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=95.18 E-value=4.3 Score=43.78 Aligned_cols=87 Identities=10% Similarity=-0.017 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHH---------hhhhhhhhhh
Q psy6893 786 LAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAIL---------RRSGMYTIAM 856 (988)
Q Consensus 786 lalgLgLi~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~---------~~lG~alia~ 856 (988)
..++..+...|+.+++...++......... ......++..|...|+.....+.+..... ..+|.++...
T Consensus 275 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 275 CNLANALKEKGSVAEAEDCYNTALRLCPTH--ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 344444555566666665555544332111 11234455556666666555555555432 2345555555
Q ss_pred hccCCCchHHHHHhhhhhccCC
Q psy6893 857 AYCGSGSNVATKRLLHVAVSDV 878 (988)
Q Consensus 857 g~~~tgn~~air~ll~~~~sd~ 878 (988)
|+. +.|++.+-..+..+|
T Consensus 353 g~~----~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 353 GKL----QEALMHYKEAIRISP 370 (388)
T ss_dssp TCC----HHHHHHHHHHHTTCT
T ss_pred CCH----HHHHHHHHHHHhhCC
Confidence 554 566666655555555
No 42
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.18 E-value=0.11 Score=52.10 Aligned_cols=179 Identities=18% Similarity=0.176 Sum_probs=98.7
Q ss_pred ecCChHHHHHHHhcccCCCCCCCCCccchhHHHHHhhhccCCCC--------chhHHHHHHhhhhcCCCchhHHHHHHHH
Q psy6893 288 HRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--------VINDYLLGQVKDATNEDDAVTGEAAGIA 359 (988)
Q Consensus 288 h~~~~~~gl~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~~--------~~~d~l~~lL~~~~~~d~~~~~~aA~lg 359 (988)
+..+.+.+...|-+.|.+ +++.++..|+.+|+-+..+... ....++..+| .+++...++.|..+
T Consensus 6 ~~~~~~~~~~~l~~LL~s----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL----~~~~~~v~~~a~~~ 77 (210)
T 4db6_A 6 HHHHHGSELPQMVQQLNS----PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL----SSPNEQILQEALWA 77 (210)
T ss_dssp -------CHHHHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT----TCSCHHHHHHHHHH
T ss_pred ccccccchhHHHHHHhcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH----cCCCHHHHHHHHHH
Confidence 334455666777778876 4778899999999988765432 1233444444 44567888899999
Q ss_pred HHHhhccCCC-------hhHHHHHHHhhhhcchHHHHHHHHHHHHHHhcCChhhHHH---------HHHHHhhcchhhhh
Q psy6893 360 MGLVLLGSKS-------ESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADD---------LVRDLCEEKDAILR 423 (988)
Q Consensus 360 lGL~~~Gs~~-------~~~~~~L~~~~~dt~~E~~~r~lalgl~~v~~g~~e~a~~---------li~~L~~~~d~~lr 423 (988)
||-+-.+... ..++..|+.++.+.+ ..+.+..+..|..+..++.+.... +++.| .+.++.++
T Consensus 78 L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~ 155 (210)
T 4db6_A 78 LSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQIL 155 (210)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHH
T ss_pred HHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCc-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHH-cCCCHHHH
Confidence 8865444321 124567777776654 445555666777777777665433 33332 33344443
Q ss_pred ccchhHHHHHhhhhhhhccccchhhHHhhccchhHHHHHhhhccCCCHHHHHHHHHHhccCCCchhhHHHHHHHHHHh
Q psy6893 424 RSGMYTIAMAYCVSYLYFDLFSDLTYRIVKNRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFIL 501 (988)
Q Consensus 424 ~~~~~~~~l~l~Lgll~~g~~~e~~l~~~~~~~~~~~~~~AYaGTGN~~~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~ 501 (988)
..+ +.+|+-+..+ .+.. ...+. +...|+.|++++. +.++++|+.|+.+|+-++
T Consensus 156 ~~a------~~aL~~l~~~-----------~~~~--~~~~~-----~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 156 QEA------LWALSNIASG-----------GNEQ--KQAVK-----EAGALEKLEQLQS-HENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHH------HHHHHHHHTS-----------CHHH--HHHHH-----HTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHC
T ss_pred HHH------HHHHHHHHcC-----------CcHH--HHHHH-----HCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHh
Confidence 321 1111111000 0000 00011 1126777888665 567789999999998775
No 43
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.15 E-value=0.39 Score=48.79 Aligned_cols=177 Identities=16% Similarity=0.140 Sum_probs=102.7
Q ss_pred HHHHHHhcccCCCCCCCCCccchhHHHHHhhhccCCCC--------chhHHHHHHhhhhcCCCchhHHHHHHHHHHHhhc
Q psy6893 294 EALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--------VINDYLLGQVKDATNEDDAVTGEAAGIAMGLVLL 365 (988)
Q Consensus 294 ~gl~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~~--------~~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~~~ 365 (988)
.++..|-++|.+ +++.++.-|+.+|+-+..+... ...+++..+|. +++...+..|..+|+-+-.
T Consensus 44 g~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~----~~~~~v~~~a~~~L~~l~~ 115 (252)
T 4hxt_A 44 GGVEVLVKLLTS----TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT----STDSEVQKEAARALANIAS 115 (252)
T ss_dssp THHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT----CSSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHhC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc----CCCHHHHHHHHHHHHHHHc
Confidence 466777777775 4678899999999988776331 13344444444 4567888888888875543
Q ss_pred cCCC-------hhHHHHHHHhhhhcchHHHHHHHHHHHHHHhcCChhhH---------HHHHHHHhhcchhhhhccchhH
Q psy6893 366 GSKS-------ESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENA---------DDLVRDLCEEKDAILRRSGMYT 429 (988)
Q Consensus 366 Gs~~-------~~~~~~L~~~~~dt~~E~~~r~lalgl~~v~~g~~e~a---------~~li~~L~~~~d~~lr~~~~~~ 429 (988)
++.. ..+++.|+.++.+.+ +.+.+..+-.|..+..++++.. ..+++. +.+.++.+|..+
T Consensus 116 ~~~~~~~~~~~~~~i~~L~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a--- 190 (252)
T 4hxt_A 116 GPDEAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL-LTSTDSEVQKEA--- 190 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHH---
T ss_pred CCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHH-HCCCCHHHHHHH---
Confidence 3211 135677888777655 4456666667777777766543 333333 334454444421
Q ss_pred HHHHhhhhhhhccccchhhHHhhccchhHHHHHhhhccCCCHHHHHHHHHHhccCCCchhhHHHHHHHHHHhhcCc
Q psy6893 430 IAMAYCVSYLYFDLFSDLTYRIVKNRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRTL 505 (988)
Q Consensus 430 ~~l~l~Lgll~~g~~~e~~l~~~~~~~~~~~~~~AYaGTGN~~~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~~~~~ 505 (988)
+.+|+-+..+ .|. ....+.- ...|+.|++++. +.++++|..|+.+|+-+....+
T Consensus 191 ---~~~L~~l~~~-----------~~~--~~~~l~~-----~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 191 ---ARALANIASG-----------PTS--AIKAIVD-----AGGVEVLQKLLT-STDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp ---HHHHHHHTTS-----------BHH--HHHHHHH-----TTHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHTCB
T ss_pred ---HHHHHHHHcC-----------CHH--HHHHHHH-----CCCHHHHHHHHC-CCcHHHHHHHHHHHHHHHcCCC
Confidence 1111111100 000 0000000 125677777664 4577899999999999997654
No 44
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=94.79 E-value=0.29 Score=48.95 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=22.4
Q ss_pred HHHHHhhhhhccCCChhhhhhHHhhhhhhh
Q psy6893 865 VATKRLLHVAVSDVNDDVRREAVTALGFIL 894 (988)
Q Consensus 865 ~air~ll~~~~sd~~~~vrraa~~alg~i~ 894 (988)
.++..|.+++.+ +++.+|+.|..+|+-+.
T Consensus 180 g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 180 GALEKLEQLQSH-ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp THHHHHHHGGGC-SCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHhC-CCHHHHHHHHHHHHHHh
Confidence 467788887764 68999999998886553
No 45
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=94.36 E-value=12 Score=44.85 Aligned_cols=47 Identities=15% Similarity=0.069 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhccCCCchhhHHHHHHHHHHhhcCccccccccCCCCchhHHhhccc
Q psy6893 471 NVATKRLLHVAVSDVNDDVRREAVTALGFILFRTLFYVAPACTRSPWPGVISLLDD 526 (988)
Q Consensus 471 ~~~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~~~~~~~~g~~~~~~~~p~ai~lL~~ 526 (988)
...+++|| +|.+..|+..|+..|.-|+..+|..| ..-+|.++..|..
T Consensus 189 ~~~l~~lL----~d~d~~V~~~a~~~l~~i~~~~~~~~-----~~~~~~~~~~L~~ 235 (621)
T 2vgl_A 189 TSRVVHLL----NDQHLGVVTAATSLITTLAQKNPEEF-----KTSVSLAVSRLSR 235 (621)
T ss_dssp HHHHHHHT----TCSCHHHHHHHHHHHHHHHHHCHHHH-----TTHHHHHHHHHHH
T ss_pred HHHHHHHh----CCCCccHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHH
Confidence 44555555 56777899999999999987665211 1235556655553
No 46
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=94.23 E-value=12 Score=45.31 Aligned_cols=133 Identities=9% Similarity=0.078 Sum_probs=72.6
Q ss_pred HHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCc-h-------HHHHHHHHHhhhcCchhhHHHHHHhhHhhh--cCC
Q psy6893 657 ALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHG-A-------VINDYLLGQVKDATNEMVRHGGCLGLGLAA--MGS 726 (988)
Q Consensus 657 ~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~-~-------~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~--~Gs 726 (988)
.+..+...+. +.+...|-+|+.++|.|..+.+ . .++..|+..+. .++..+|..++..||-.. .+.
T Consensus 370 l~~~l~~~l~----~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~ 444 (861)
T 2bpt_A 370 VLEFVEQNIT----ADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN-DQSLQVKETTAWCIGRIADSVAE 444 (861)
T ss_dssp HHHHHHHHTT----CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHcC----CCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhhh
Confidence 3444445553 4457789999999999987765 2 13445555553 356789999988888543 121
Q ss_pred ------CCHHHHHHHHHhhccCChhhHHHHHHHhhcccCCCC----------CHHHHHHHHHHHHhccc-chhhhHHHHH
Q psy6893 727 ------ARDDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSK----------SESAIQDMVAYAKETQH-EKILRGLAVG 789 (988)
Q Consensus 727 ------~~~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~----------n~d~i~~ll~~~~etq~-e~i~R~lalg 789 (988)
.-+.++..|...+ .|+......|+.+++-+.-+.+ -.+++..+++.+.+.+. ..+...+.-+
T Consensus 445 ~~~~~~~~~~~l~~l~~~l-~~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~a 523 (861)
T 2bpt_A 445 SIDPQQHLPGVVQACLIGL-QDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSA 523 (861)
T ss_dssp GSCTTTTHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHH
Confidence 1234555555555 4543334455666554322211 13455566666543332 3333344445
Q ss_pred HHHHhc
Q psy6893 790 ISFIMY 795 (988)
Q Consensus 790 LgLi~~ 795 (988)
|+.+.-
T Consensus 524 l~~l~~ 529 (861)
T 2bpt_A 524 LTTMVE 529 (861)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 47
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=94.16 E-value=7.5 Score=41.87 Aligned_cols=182 Identities=14% Similarity=0.002 Sum_probs=81.6
Q ss_pred cCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCc--hHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCC
Q psy6893 651 RGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHG--AVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSAR 728 (988)
Q Consensus 651 ~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~--~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~ 728 (988)
.|+.++++..++.-+..+ + . ...+++.+|.+....+ .+++..+...+...++.. .+...+|.++...++
T Consensus 182 ~g~~~~A~~~~~~al~~~--p--~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 182 QGEIWLAIHHFEKAVTLD--P--N--FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA---VVHGNLACVYYEQGL 252 (388)
T ss_dssp TTCHHHHHHHHHHHHHHC--T--T--CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHhcC--C--C--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH---HHHHHHHHHHHHcCC
Confidence 455666666665554210 0 1 1234555555544433 345555444443333221 123345555555555
Q ss_pred HH-HHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHH
Q psy6893 729 DD-IYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRD 807 (988)
Q Consensus 729 ~d-v~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~ 807 (988)
.+ ..+.+...+..++... .+-..+|.++...|+.+-...+++-+.+...+...-...++..+.-.|+.+++...++.
T Consensus 253 ~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQPHFP--DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp HHHHHHHHHHHHHTCSSCH--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33 3444444443332221 12223344444444544333333322222222222233444445556777777666666
Q ss_pred HhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHH
Q psy6893 808 LCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAI 845 (988)
Q Consensus 808 L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~ 845 (988)
........ ....+.++..|.-.|+.....+.+..+.
T Consensus 331 al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 331 ALEVFPEF--AAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HTTSCTTC--HHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55432211 1224556667777777766665555544
No 48
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=93.89 E-value=0.65 Score=54.16 Aligned_cols=204 Identities=14% Similarity=0.122 Sum_probs=103.9
Q ss_pred HHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHH-------HHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHH--
Q psy6893 695 INDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDD-------IYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSES-- 765 (988)
Q Consensus 695 ~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~d-------v~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d-- 765 (988)
++..|...+..++++.++..|+..|+-...|+.... ++..|..++.+.+....+.|+.++|-|-.. +.+
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~--~~~~r 197 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGA--GSAFR 197 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--CHHHH
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc--CHHHH
Confidence 355566666556667788888887776655543321 344566666555555566777788776322 222
Q ss_pred -------HHHHHHHHHHhcc----cchhhhHHHHHHHHHhcCCch-----hHH---HHHHHHhcccchhhhhhcHHHHHH
Q psy6893 766 -------AIQDMVAYAKETQ----HEKILRGLAVGISFIMYGQLE-----NAD---DLVRDLCEEKDAILRRSGMYTIAM 826 (988)
Q Consensus 766 -------~i~~ll~~~~etq----~e~i~R~lalgLgLi~~Gr~e-----~a~---~li~~L~~~~dp~~r~~~~~~lsl 826 (988)
++..++.++.... .....|.++..++-+..+... ... +.+-.|..++++-.+...+ .++
T Consensus 198 ~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~--~aL 275 (529)
T 3tpo_A 198 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC--WAI 275 (529)
T ss_dssp HHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHH--HHH
T ss_pred HHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHH--HHH
Confidence 2334455443222 122335555555545444321 111 2222233445555554433 344
Q ss_pred HHcCCCChhHHHHHH--------HHHH----HhhhhhhhhhhhccCCCchH---------HHHHhhhhhccCCChhhhhh
Q psy6893 827 AYCGSGSNVATKRLL--------HDAI----LRRSGMYTIAMAYCGSGSNV---------ATKRLLHVAVSDVNDDVRRE 885 (988)
Q Consensus 827 AyaGtGnvl~iq~lL--------~~~~----~~~lG~alia~g~~~tgn~~---------air~ll~~~~sd~~~~vrra 885 (988)
+|+..++...++.+. ..++ ..+.--++-+++...+|++. ++..|.+++. ++++++|+.
T Consensus 276 ~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~-~~~~~i~~~ 354 (529)
T 3tpo_A 276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKE 354 (529)
T ss_dssp HHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT-CSSHHHHHH
T ss_pred HHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHc-CCCHHHHHH
Confidence 555554443322211 1111 12222233333333344432 3344555554 478999999
Q ss_pred HHhhhhhhhhhhhhhhHh
Q psy6893 886 AVTALGFILFRKKRTRRK 903 (988)
Q Consensus 886 a~~alg~i~~~npeq~pk 903 (988)
|+.+++-+...++.+...
T Consensus 355 a~~aL~nl~~~~~~~~~~ 372 (529)
T 3tpo_A 355 ATWTMSNITAGRQDQIQQ 372 (529)
T ss_dssp HHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHhcccHHHHHH
Confidence 999999998877775543
No 49
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=93.55 E-value=1.9 Score=49.02 Aligned_cols=37 Identities=16% Similarity=0.054 Sum_probs=29.2
Q ss_pred CchHHHHHhhhhhccCCChhhhhhHHhhhhhhhhhhhh
Q psy6893 862 GSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRKKR 899 (988)
Q Consensus 862 gn~~air~ll~~~~sd~~~~vrraa~~alg~i~~~npe 899 (988)
+...++..|++++.+ .++++|..++.+++-+...+++
T Consensus 263 ~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~ 299 (529)
T 1jdh_A 263 GMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNYK 299 (529)
T ss_dssp CCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHH
Confidence 345678888888754 6899999999999988876654
No 50
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=92.69 E-value=0.71 Score=47.35 Aligned_cols=136 Identities=19% Similarity=0.154 Sum_probs=86.0
Q ss_pred HHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch--------HHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCC
Q psy6893 657 ALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--------VINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSAR 728 (988)
Q Consensus 657 ~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--------~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~ 728 (988)
++..|-.+|. ++++.++.-|+.+|+.+..+... .++..|...+.+ +++.++..|+..|+-...+...
T Consensus 55 ~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~ 129 (252)
T 4db8_A 55 ALPALVQLLS----SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNE 129 (252)
T ss_dssp HHHHHHHGGG----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHH
T ss_pred cHHHHHHHHc----CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCch
Confidence 5666777775 44578899999999999765432 146667666644 5678999999999877555443
Q ss_pred H-------HHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHH---------HHHHHHHHHhcccchhhhHHHHHHHH
Q psy6893 729 D-------DIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESA---------IQDMVAYAKETQHEKILRGLAVGISF 792 (988)
Q Consensus 729 ~-------dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~---------i~~ll~~~~etq~e~i~R~lalgLgL 792 (988)
. .++..|..++..++....+.|+.+++-+-.+ +.+. +..+++++.+ .+..+....+..|+-
T Consensus 130 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~ 206 (252)
T 4db8_A 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSN 206 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTCHHHHHHGGGC-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC--ChHHHHHHHHCCCHHHHHHHHCC-CCHHHHHHHHHHHHH
Confidence 3 2456777777554444455677787776544 3332 4455555533 244555556666666
Q ss_pred HhcCCchh
Q psy6893 793 IMYGQLEN 800 (988)
Q Consensus 793 i~~Gr~e~ 800 (988)
+..+..+.
T Consensus 207 l~~~~~~~ 214 (252)
T 4db8_A 207 IASGGNEQ 214 (252)
T ss_dssp HTTSCHHH
T ss_pred HhcCCHHH
Confidence 65555544
No 51
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=92.27 E-value=25 Score=42.43 Aligned_cols=56 Identities=25% Similarity=0.223 Sum_probs=39.6
Q ss_pred ccchhHHHHHhhhccCCCCchhHHHHHHhhhhcCCCchhHHHHHHHHHHHhhccCC
Q psy6893 313 YYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEDDAVTGEAAGIAMGLVLLGSK 368 (988)
Q Consensus 313 y~~~GaL~alGli~~g~~~~~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~~~Gs~ 368 (988)
..+-.|.-+++.+....+......++..|...+.+.+...+++|..++|.+.-|..
T Consensus 346 ~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~ 401 (861)
T 2bpt_A 346 NVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD 401 (861)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred cHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCC
Confidence 45556666676665544444566777777777767788999999999998776554
No 52
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=91.91 E-value=20 Score=40.71 Aligned_cols=206 Identities=7% Similarity=-0.058 Sum_probs=101.0
Q ss_pred eecCChHHHHHHHhcccCCCCCCCCCccchhHHHHHhhhccCCCCchhHHHHHHhhhhcC-CCchhHHHHHHHHHHHhhc
Q psy6893 287 IHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATN-EDDAVTGEAAGIAMGLVLL 365 (988)
Q Consensus 287 Ih~~~~~~gl~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~~~~~d~l~~lL~~~~~-~d~~~~~~aA~lglGL~~~ 365 (988)
+..++.++++..+++.+-.. .+. -+++.+|.+....+. .+.++..+..... ..+. .+...+|.+|.
T Consensus 95 ~~~g~~~~A~~~~~~~~~~~---p~~----~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~ 161 (597)
T 2xpi_A 95 LMQQQYKCAAFVGEKVLDIT---GNP----NDAFWLAQVYCCTGD--YARAKCLLTKEDLYNRSS----ACRYLAAFCLV 161 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHH---CCH----HHHHHHHHHHHHTTC--HHHHHHHHHHTCGGGTCH----HHHHHHHHHHH
T ss_pred HHccCchHHHHHHHHHHhhC---CCc----hHHHHHHHHHHHcCc--HHHHHHHHHHHhccccch----hHHHHHHHHHH
Confidence 34567777777777665211 111 334444444444332 2223333333211 1122 24456666666
Q ss_pred cCCChhHHHHHHH-hhhhc--------------c-hHHHHHHHHHHHHHHhcCChhhHHHHHHHHhhcchhhhhccchhH
Q psy6893 366 GSKSESAIQDMVA-YAKET--------------Q-HEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYT 429 (988)
Q Consensus 366 Gs~~~~~~~~L~~-~~~dt--------------~-~E~~~r~lalgl~~v~~g~~e~a~~li~~L~~~~d~~lr~~~~~~ 429 (988)
-.++-+-...++. ...+. . ......-..+|.++...|+.+.|-.+++.+++.. |.. +.
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~-----~~ 235 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKC-----YE 235 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----HH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chh-----hH
Confidence 6666543333322 11111 0 1225556788888889999999999888887642 211 11
Q ss_pred HHHHhhhhhhhcccc--chhhHHh------hccchh----HH-HHHhhhccCCCHHHHHHHHHHhccCCCchhhHHHHHH
Q psy6893 430 IAMAYCVSYLYFDLF--SDLTYRI------VKNRSG----MY-TIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTA 496 (988)
Q Consensus 430 ~~l~l~Lgll~~g~~--~e~~l~~------~~~~~~----~~-~~~~AYaGTGN~~~Iq~LLhi~~s~~~~dvrr~AV~~ 496 (988)
.+ ..|+.+++..+ ....+.. .+.... .| ..+..|+..|+...-.+++.-+... .+++...-.++
T Consensus 236 ~~--~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~ 312 (597)
T 2xpi_A 236 AF--DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKA 312 (597)
T ss_dssp HH--HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHH
T ss_pred HH--HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHH
Confidence 11 22333343333 1111111 111111 11 3477888888888888888766654 23333333333
Q ss_pred HHHHhhcCccccccccCCCCchhHHhhccc
Q psy6893 497 LGFILFRTLFYVAPACTRSPWPGVISLLDD 526 (988)
Q Consensus 497 lg~I~~~~~~~~g~~~~~~~~p~ai~lL~~ 526 (988)
.++...|+ ...|+.++..
T Consensus 313 ~~~~~~g~------------~~~A~~~~~~ 330 (597)
T 2xpi_A 313 DTLFVRSR------------FIDVLAITTK 330 (597)
T ss_dssp HHHHHTTC------------HHHHHHHHHH
T ss_pred HHHHHhcC------------HHHHHHHHHH
Confidence 33443333 4677777764
No 53
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=91.57 E-value=10 Score=45.24 Aligned_cols=73 Identities=10% Similarity=0.105 Sum_probs=46.6
Q ss_pred HHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCC-----------CHHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCC
Q psy6893 695 INDYLLGQVKDATNEMVRHGGCLGLGLAAMGSA-----------RDDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKS 763 (988)
Q Consensus 695 ~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~-----------~~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n 763 (988)
++..|+..+.++.+..++-.|+-.|.-...|.. .+..+..|..+|.+++....+.|+-+++-+-.++.|
T Consensus 309 ~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~ 388 (584)
T 3l6x_A 309 VVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARN 388 (584)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH
Confidence 455666777666667777777777766656652 234466677777655555555666677777667666
Q ss_pred HHHH
Q psy6893 764 ESAI 767 (988)
Q Consensus 764 ~d~i 767 (988)
.+++
T Consensus 389 ~~~I 392 (584)
T 3l6x_A 389 KELI 392 (584)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 54
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=90.88 E-value=34 Score=41.30 Aligned_cols=111 Identities=13% Similarity=0.085 Sum_probs=64.4
Q ss_pred hhhhhhhcccccCC----hHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchH--------HHHHHHHHhhhcC
Q psy6893 640 LTATASLGVIHRGH----ETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAV--------INDYLLGQVKDAT 707 (988)
Q Consensus 640 fsA~ASLG~Ih~gn----~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~--------~~~~Ll~~l~~s~ 707 (988)
..|...|+.+.... ....+..+..++. +.+...|.+|+.++|.+..+.+.+ ++..|+..+ +.+
T Consensus 346 ~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~----~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l-~d~ 420 (876)
T 1qgr_A 346 KAAGVCLMLLATCCEDDIVPHVLPFIKEHIK----NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM-KDP 420 (876)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHTT----CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHH-TCS
T ss_pred HHHHHHHHHHHHHCcHhhHHHHHHHHHHHcc----CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh-CCC
Confidence 34455555544322 2234445555553 456789999999999998777521 344555555 345
Q ss_pred chhhHHHHHHhhHhhhcC--------CCCHHHHHHHHHhhccCChhhHHHHHHHhhc
Q psy6893 708 NEMVRHGGCLGLGLAAMG--------SARDDIYEQLKFNLYQDDAVTGEAAGIAMGL 756 (988)
Q Consensus 708 ~~~ir~gA~LGLGla~~G--------s~~~dv~~~L~~~l~~D~~~~~e~AalAlGL 756 (988)
+..+|..|+..||-..-. ..-+.++..|...+ .|+....+.|+.+++-
T Consensus 421 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l-~~~~~v~~~a~~al~~ 476 (876)
T 1qgr_A 421 SVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL-SAEPRVASNVCWAFSS 476 (876)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 678999999999865422 11234555566555 3443333445555444
No 55
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=89.85 E-value=31 Score=39.23 Aligned_cols=78 Identities=13% Similarity=0.011 Sum_probs=49.2
Q ss_pred ccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCchH-------------HHHHHHHHhhhcCchhhHHHHH
Q psy6893 650 HRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAV-------------INDYLLGQVKDATNEMVRHGGC 716 (988)
Q Consensus 650 h~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~~-------------~~~~Ll~~l~~s~~~~ir~gA~ 716 (988)
..|+. .++..|-.+|. .+.++.++..|+-+|+-+.+|++.. .+..|.+.+ .+.++.++..|+
T Consensus 278 ~l~~~-~~l~~L~~lL~---~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL-~~~~~~v~~~A~ 352 (457)
T 1xm9_A 278 WLYHS-DAIRTYLNLMG---KSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLL-QSGNSDVVRSGA 352 (457)
T ss_dssp GGGSH-HHHHHHHHHHH---HCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHT-TCSCHHHHHHHH
T ss_pred HHhCc-chHHHHHHHHh---hcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHH-hCCCHhHHHHHH
Confidence 34554 35555555664 2445788888999999887765320 234455444 455677888888
Q ss_pred HhhHhhhcCCCCHHHH
Q psy6893 717 LGLGLAAMGSARDDIY 732 (988)
Q Consensus 717 LGLGla~~Gs~~~dv~ 732 (988)
-.|.-...++.+.+++
T Consensus 353 ~aL~nls~~~~~~~~i 368 (457)
T 1xm9_A 353 SLLSNMSRHPLLHRVM 368 (457)
T ss_dssp HHHHHHHTSGGGHHHH
T ss_pred HHHHHHhcCHHHHHHH
Confidence 8888776666555443
No 56
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=89.42 E-value=8.8 Score=42.69 Aligned_cols=210 Identities=11% Similarity=0.027 Sum_probs=109.6
Q ss_pred CccchhhHHHHHhhhccCCch-------HHHHHHHHHhhh----------cCchhhHHHHHHhhHhhhcCCC-CHH-H--
Q psy6893 673 SGYYEGGGLYALGLIHANHGA-------VINDYLLGQVKD----------ATNEMVRHGGCLGLGLAAMGSA-RDD-I-- 731 (988)
Q Consensus 673 ~~~~k~GAL~AlGlI~ag~~~-------~~~~~Ll~~l~~----------s~~~~ir~gA~LGLGla~~Gs~-~~d-v-- 731 (988)
......+|+-+|+.|...... ..+..|...+.. +.+..++..|+..|.-...++. +.. +
T Consensus 45 ~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 45 VEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445566899999999655311 135555555521 1235678888888887766654 222 2
Q ss_pred ----HHHHHHhhccCChhhHHHHHHHhhcccCCCC--CHH------HHHHHHHHHHhcccchhhhHHHHHHHHHhcCC--
Q psy6893 732 ----YEQLKFNLYQDDAVTGEAAGIAMGLVLLGSK--SES------AIQDMVAYAKETQHEKILRGLAVGISFIMYGQ-- 797 (988)
Q Consensus 732 ----~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~--n~d------~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr-- 797 (988)
+..|..+|.+++....+.|+-+++-+-.++. |.+ ++..|++++..+.+....+..+-.|.=+-.+.
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 4456666655555566678888887755422 111 35566666544444445554444443333322
Q ss_pred --------chhHHHHHHHHhcccch----hhhhhcHHHHHHHHcCCCChhHHHHHHHHHHHhhhhhhhhhhhccCCCchH
Q psy6893 798 --------LENADDLVRDLCEEKDA----ILRRSGMYTIAMAYCGSGSNVATKRLLHDAILRRSGMYTIAMAYCGSGSNV 865 (988)
Q Consensus 798 --------~e~a~~li~~L~~~~dp----~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~~~lG~alia~g~~~tgn~~ 865 (988)
...+..+++.|....+. +.+.+.-..-.++..=+|+....+. + ....
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~----------------i-----~~~g 263 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI----------------L-----RENN 263 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH----------------H-----HTTT
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHH----------------H-----HHcC
Confidence 12233444444432221 1111111111111000011111110 1 1123
Q ss_pred HHHHhhhhhccCCChhhhhhHHhhhhhhhhhhhhhhHhh
Q psy6893 866 ATKRLLHVAVSDVNDDVRREAVTALGFILFRKKRTRRKK 904 (988)
Q Consensus 866 air~ll~~~~sd~~~~vrraa~~alg~i~~~npeq~pk~ 904 (988)
+|..|++++.+ +++.+++.|+.+|+-+..+++++....
T Consensus 264 ~i~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i 301 (354)
T 3nmw_A 264 CLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEAL 301 (354)
T ss_dssp HHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred CHHHHHHHHcC-CChHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 57788888765 688899999999988887777765444
No 57
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=89.16 E-value=11 Score=38.62 Aligned_cols=216 Identities=10% Similarity=0.019 Sum_probs=103.7
Q ss_pred ccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCc---hHHHHHHHHHhhhcCchhhHHHHHHhhHhhhc
Q psy6893 648 VIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHG---AVINDYLLGQVKDATNEMVRHGGCLGLGLAAM 724 (988)
Q Consensus 648 ~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~---~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~ 724 (988)
....|+.++++..+...+... + ....+++.+|.+....+ .+++.++...+...++. ..+...+|.++.
T Consensus 66 ~~~~~~~~~A~~~~~~~~~~~--~----~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~ 136 (330)
T 3hym_B 66 LVELNKANELFYLSHKLVDLY--P----SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY---GPAWIAYGHSFA 136 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--T----TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC---THHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhC--c----CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHH
Confidence 356677777777776666311 1 11334555555544444 23555554444322221 123445555555
Q ss_pred CCCCH-HHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHH
Q psy6893 725 GSARD-DIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADD 803 (988)
Q Consensus 725 Gs~~~-dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~ 803 (988)
-.++. +++..+...+..++... .+-+.+|.++.-.++.+-...+++-+.....+...-...+|..+...|+.+.+..
T Consensus 137 ~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 214 (330)
T 3hym_B 137 VESEHDQAMAAYFTAAQLMKGCH--LPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK 214 (330)
T ss_dssp HHTCHHHHHHHHHHHHHHTTTCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhccccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHH
Confidence 55543 33444444332222111 1222345555555565544444443333322222333444544556677766666
Q ss_pred HHHHHhccc----ch---hhhhhcHHHHHHHHcCCCChhHHHHHHHHHHH---------hhhhhhhhhhhccCCCchHHH
Q psy6893 804 LVRDLCEEK----DA---ILRRSGMYTIAMAYCGSGSNVATKRLLHDAIL---------RRSGMYTIAMAYCGSGSNVAT 867 (988)
Q Consensus 804 li~~L~~~~----dp---~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~---------~~lG~alia~g~~~tgn~~ai 867 (988)
.++...... ++ -......+.++..|...|+.......+..+.. ..+|.++..+|+. ..|+
T Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~----~~A~ 290 (330)
T 3hym_B 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNF----ENAV 290 (330)
T ss_dssp HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCH----HHHH
T ss_pred HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccH----HHHH
Confidence 665554321 00 00112345566666666777666666666554 3456666666654 5556
Q ss_pred HHhhhhhccCC
Q psy6893 868 KRLLHVAVSDV 878 (988)
Q Consensus 868 r~ll~~~~sd~ 878 (988)
..+-..+..+|
T Consensus 291 ~~~~~al~~~p 301 (330)
T 3hym_B 291 DYFHTALGLRR 301 (330)
T ss_dssp HHHHTTTTTCS
T ss_pred HHHHHHHccCC
Confidence 55555554454
No 58
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=89.15 E-value=14 Score=37.96 Aligned_cols=183 Identities=15% Similarity=0.001 Sum_probs=86.9
Q ss_pred cccC-ChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccC--CchHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcC
Q psy6893 649 IHRG-HETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHAN--HGAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMG 725 (988)
Q Consensus 649 Ih~g-n~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag--~~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~G 725 (988)
...| +.++++..+...+... ..+ .-+++.+|.++.. ...+++..+...+...++. ..+...+|.++.-
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~----~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~ 171 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE----KTY--GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC---HLPMLYIGLEYGL 171 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC----TTC--THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC---SHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhC----Ccc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHH
Confidence 3456 7778888887776421 111 2344455544433 3344555555444333221 1123335666666
Q ss_pred CCCHH-HHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhc----cc----ch-hhhHHHHHHHHHhc
Q psy6893 726 SARDD-IYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKET----QH----EK-ILRGLAVGISFIMY 795 (988)
Q Consensus 726 s~~~d-v~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~et----q~----e~-i~R~lalgLgLi~~ 795 (988)
.++.+ ....+...+..++... .+-..+|.++.-.++.+-...+++-+.+. .. .. ..-...+|..+...
T Consensus 172 ~~~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAPEDP--FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 66533 4445544443332221 23344555555555655443333322211 10 11 12334555556667
Q ss_pred CCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHH
Q psy6893 796 GQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDA 844 (988)
Q Consensus 796 Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~ 844 (988)
|+.+.+...++......... ....+.++..|.-.|+.....+.+..+
T Consensus 250 g~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 250 KKYAEALDYHRQALVLIPQN--ASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp TCHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHhhCccc--hHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 77777777666655432111 222345566666666665555444443
No 59
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=88.82 E-value=34 Score=42.07 Aligned_cols=30 Identities=23% Similarity=0.164 Sum_probs=19.2
Q ss_pred HHHhhhccCC---------CHHHHHHHHHHhccCCCchh
Q psy6893 460 TIAMAYCGSG---------SNVATKRLLHVAVSDVNDDV 489 (988)
Q Consensus 460 ~~~~AYaGTG---------N~~~Iq~LLhi~~s~~~~dv 489 (988)
+++|||.-.. |...+++|+.++.+..+.++
T Consensus 355 vEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~ 393 (778)
T 3opb_A 355 VEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHC 393 (778)
T ss_dssp HHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTH
T ss_pred HHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchH
Confidence 7778887654 45557888888865333333
No 60
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=87.63 E-value=19 Score=41.62 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=28.9
Q ss_pred hHHHHHhhhhhccCCChhhhhhHHhhhhhhhhhhhhhh
Q psy6893 864 NVATKRLLHVAVSDVNDDVRREAVTALGFILFRKKRTR 901 (988)
Q Consensus 864 ~~air~ll~~~~sd~~~~vrraa~~alg~i~~~npeq~ 901 (988)
..+|..|..++.+ .++.+|+.|+.+|.-++.++|...
T Consensus 420 ~G~I~~Lv~LL~s-~~~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 420 MGAVSMLKNLIHS-KHKMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp HTHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTCCSCC-
T ss_pred CCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCCHhhh
Confidence 3467788888765 588999999999999988887643
No 61
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=87.25 E-value=10 Score=43.82 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=28.9
Q ss_pred HHHHhhhhhccCCChhhhhhHHhhhhhhhhhhhhhhHhh
Q psy6893 866 ATKRLLHVAVSDVNDDVRREAVTALGFILFRKKRTRRKK 904 (988)
Q Consensus 866 air~ll~~~~sd~~~~vrraa~~alg~i~~~npeq~pk~ 904 (988)
+|..|++++.+ ++..+++.|+.+++-+..+++++....
T Consensus 380 ~i~~Lv~LL~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i 417 (458)
T 3nmz_A 380 CLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEAL 417 (458)
T ss_dssp HHHHHHHHSSC-SCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred cHHHHHHHHcC-CChHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56777787765 578899999999988887777765444
No 62
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=86.07 E-value=15 Score=36.93 Aligned_cols=85 Identities=9% Similarity=0.038 Sum_probs=48.3
Q ss_pred cccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch--HHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCC
Q psy6893 649 IHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--VINDYLLGQVKDATNEMVRHGGCLGLGLAAMGS 726 (988)
Q Consensus 649 Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs 726 (988)
...|+.++++..+...+. .+.++...+-+++.+|.++...+. +++.++...+...++. ..+...+|.+|...
T Consensus 48 ~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~ 121 (272)
T 3u4t_A 48 YELAKYDLAQKDIETYFS---KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR---LDMYGQIGSYFYNK 121 (272)
T ss_dssp HHTTCHHHHHHHHHHHHT---TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHh---ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHc
Confidence 356778888888877774 123444556666777766655443 4566555544433321 13556677777666
Q ss_pred CCHH-HHHHHHHhh
Q psy6893 727 ARDD-IYEQLKFNL 739 (988)
Q Consensus 727 ~~~d-v~~~L~~~l 739 (988)
++.+ ....+...+
T Consensus 122 ~~~~~A~~~~~~al 135 (272)
T 3u4t_A 122 GNFPLAIQYMEKQI 135 (272)
T ss_dssp TCHHHHHHHHGGGC
T ss_pred cCHHHHHHHHHHHh
Confidence 6643 444444444
No 63
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=85.98 E-value=4.3 Score=43.02 Aligned_cols=133 Identities=14% Similarity=0.061 Sum_probs=83.0
Q ss_pred HHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHHHHHHHHHhhccCChh-hHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q psy6893 696 NDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDDIYEQLKFNLYQDDAV-TGEAAGIAMGLVLLGSKSESAIQDMVAYA 774 (988)
Q Consensus 696 ~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~dv~~~L~~~l~~D~~~-~~e~AalAlGLI~vGs~n~d~i~~ll~~~ 774 (988)
+..|...|-+++...+|.-|+.-||.. +..++++..|.+.+..|+.. ..+.++-+.|-+....+...++..|....
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~---~~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W~ 148 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL---SKDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPIIDEWL 148 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT---TTSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc---cCcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 334445565667779999999988876 47789999999866566654 45677777776654222223444444433
Q ss_pred HhcccchhhhHHHHHH---HH--HhcCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCCh
Q psy6893 775 KETQHEKILRGLAVGI---SF--IMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSN 834 (988)
Q Consensus 775 ~etq~e~i~R~lalgL---gL--i~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnv 834 (988)
..++..+.|.++.++ +. -+....+.+-.+++.|..+++++.|.+ ++-.|-=+.+-||
T Consensus 149 -~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKS--Van~LrD~SK~~P 210 (240)
T 3l9t_A 149 -KSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKS--VGNALRDISKKFP 210 (240)
T ss_dssp -HCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHH--HHHHHHHHHTTCH
T ss_pred -cCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHH--HHHHHHHHhhhCH
Confidence 222344456666665 11 123445678889999999999988877 4444444443333
No 64
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=85.22 E-value=21 Score=35.72 Aligned_cols=217 Identities=16% Similarity=0.105 Sum_probs=116.7
Q ss_pred ccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch--HHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCC
Q psy6893 650 HRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--VINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSA 727 (988)
Q Consensus 650 h~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~ 727 (988)
..|+.++++..+...+... ..++....-+++.+|.++...+. +++.++...+...++. ..+...+|.++...+
T Consensus 17 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASR--ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM---PEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHhcc--cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcc
Confidence 3478888999888877521 12234567778888877665543 4666665544433321 224566777776666
Q ss_pred CH-HHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHH
Q psy6893 728 RD-DIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVR 806 (988)
Q Consensus 728 ~~-dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~ 806 (988)
+. +.+..+...+..++... .+-+.+|.++...++.+-...+++-+.+...+........++. ...|+.+.+...++
T Consensus 92 ~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYN--YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLK 168 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccc--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 63 34555555553333221 3344556666666666544444433332222222222333332 34477777777774
Q ss_pred HHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHH-------------HhhhhhhhhhhhccCCCchHHHHHhhhh
Q psy6893 807 DLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAI-------------LRRSGMYTIAMAYCGSGSNVATKRLLHV 873 (988)
Q Consensus 807 ~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~-------------~~~lG~alia~g~~~tgn~~air~ll~~ 873 (988)
.......+. ...+..+..|.+.++.......+..++ ...+|.++..+|+. +.|+..+-..
T Consensus 169 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~A~~~~~~a 241 (275)
T 1xnf_A 169 QHFEKSDKE---QWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL----DSATALFKLA 241 (275)
T ss_dssp HHHHHSCCC---STHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHH
T ss_pred HHHhcCCcc---hHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCH----HHHHHHHHHH
Confidence 443322221 223456667778777654444444322 13467777766665 6677777666
Q ss_pred hccCCChh
Q psy6893 874 AVSDVNDD 881 (988)
Q Consensus 874 ~~sd~~~~ 881 (988)
+..+|++.
T Consensus 242 l~~~p~~~ 249 (275)
T 1xnf_A 242 VANNVHNF 249 (275)
T ss_dssp HTTCCTTC
T ss_pred HhCCchhH
Confidence 66666443
No 65
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=85.15 E-value=35 Score=37.07 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=9.5
Q ss_pred HHHHHHcCCCChhHHHHHHHHH
Q psy6893 823 TIAMAYCGSGSNVATKRLLHDA 844 (988)
Q Consensus 823 ~lslAyaGtGnvl~iq~lL~~~ 844 (988)
.++..|.-.|+.......+..+
T Consensus 216 ~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 216 KISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444444444444333
No 66
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=85.11 E-value=10 Score=40.23 Aligned_cols=211 Identities=13% Similarity=0.107 Sum_probs=115.0
Q ss_pred cccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCc--hHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCC
Q psy6893 649 IHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHG--AVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGS 726 (988)
Q Consensus 649 Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~--~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs 726 (988)
...|+.++++..+...+... + ...-+++.+|.++...+ .+++..+...+...++. ..+...+|.+|.-.
T Consensus 76 ~~~g~~~~A~~~~~~al~~~--p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 76 LKEGDLPVTILFMEAAILQD--P----GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN---LKALMALAVSYTNT 146 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--T----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhC--c----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHcc
Confidence 45678889999988877421 1 12456777777766554 34666665554433322 23566777777666
Q ss_pred CCHH-HHHHHHHhhccCChhhHHH--------HHHHhhcccCCCCCHHHHHHHHHHHHhcccc--hhhhHHHHHHHHHhc
Q psy6893 727 ARDD-IYEQLKFNLYQDDAVTGEA--------AGIAMGLVLLGSKSESAIQDMVAYAKETQHE--KILRGLAVGISFIMY 795 (988)
Q Consensus 727 ~~~d-v~~~L~~~l~~D~~~~~e~--------AalAlGLI~vGs~n~d~i~~ll~~~~etq~e--~i~R~lalgLgLi~~ 795 (988)
++.+ ....+...+..++...... ....+|.++...++.+-...+++-+.....+ ...-...+|..+...
T Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 6643 4444444443222211101 1123466666655555444444433332222 222344556656777
Q ss_pred CCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHH---------hhhhhhhhhhhccCCCchHH
Q psy6893 796 GQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAIL---------RRSGMYTIAMAYCGSGSNVA 866 (988)
Q Consensus 796 Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~---------~~lG~alia~g~~~tgn~~a 866 (988)
|+.+.+...++......... ....+.++..|.-.|+.......+..+.. ..+|.++..+|+- ..|
T Consensus 227 g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----~~A 300 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVRPED--YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY----REA 300 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC----HHH
T ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH----HHH
Confidence 88888887777765443221 22346677888888898887777777664 4577777777775 555
Q ss_pred HHHhhhhh
Q psy6893 867 TKRLLHVA 874 (988)
Q Consensus 867 ir~ll~~~ 874 (988)
+..+-..+
T Consensus 301 ~~~~~~al 308 (365)
T 4eqf_A 301 VSNFLTAL 308 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
No 67
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=84.99 E-value=16 Score=38.40 Aligned_cols=210 Identities=11% Similarity=0.075 Sum_probs=106.2
Q ss_pred cccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCc--hHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCC
Q psy6893 649 IHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHG--AVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGS 726 (988)
Q Consensus 649 Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~--~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs 726 (988)
...|+.++++..+...+... .. ...+++.+|.++...+ .+++..+...+...++. ..+...+|.++...
T Consensus 75 ~~~g~~~~A~~~~~~al~~~----p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~ 145 (368)
T 1fch_A 75 LQEGDLPNAVLLFEAAVQQD----PK--HMEAWQYLGTTQAENEQELLAISALRRCLELKPDN---QTALMALAVSFTNE 145 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHSC----TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhC----CC--CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHc
Confidence 45678888888888777421 11 2345556665554443 34666555444333221 23556666676666
Q ss_pred CCH-HHHHHHHHhhccCChhhHHHHHH--------------HhhcccCCCCCHH-HHHHHHHHHHhcccc-hhhhHHHHH
Q psy6893 727 ARD-DIYEQLKFNLYQDDAVTGEAAGI--------------AMGLVLLGSKSES-AIQDMVAYAKETQHE-KILRGLAVG 789 (988)
Q Consensus 727 ~~~-dv~~~L~~~l~~D~~~~~e~Aal--------------AlGLI~vGs~n~d-~i~~ll~~~~etq~e-~i~R~lalg 789 (988)
++. +....+...+..++......... .+|.++ ..++.+ ++..+-+.+...... ...-...+|
T Consensus 146 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~ 224 (368)
T 1fch_A 146 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 224 (368)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHH
Confidence 653 34444444443222111000000 122222 112222 222222222111111 222344555
Q ss_pred HHHHhcCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHH---------hhhhhhhhhhhccC
Q psy6893 790 ISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAIL---------RRSGMYTIAMAYCG 860 (988)
Q Consensus 790 LgLi~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~---------~~lG~alia~g~~~ 860 (988)
..+...|+.+.+...++......... ....+.++..|...|+.......+..+.. ..+|.++..+|+-
T Consensus 225 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~- 301 (368)
T 1fch_A 225 VLFNLSGEYDKAVDCFTAALSVRPND--YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH- 301 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH-
Confidence 55666788888777777655432211 12345677778888888887777777654 4577777777775
Q ss_pred CCchHHHHHhhhhh
Q psy6893 861 SGSNVATKRLLHVA 874 (988)
Q Consensus 861 tgn~~air~ll~~~ 874 (988)
..|+..+-..+
T Consensus 302 ---~~A~~~~~~al 312 (368)
T 1fch_A 302 ---REAVEHFLEAL 312 (368)
T ss_dssp ---HHHHHHHHHHH
T ss_pred ---HHHHHHHHHHH
Confidence 55555554444
No 68
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=84.93 E-value=15 Score=38.97 Aligned_cols=26 Identities=15% Similarity=0.048 Sum_probs=13.2
Q ss_pred hhhhhhhhhccCCCchHHHHHhhhhhccCC
Q psy6893 849 SGMYTIAMAYCGSGSNVATKRLLHVAVSDV 878 (988)
Q Consensus 849 lG~alia~g~~~tgn~~air~ll~~~~sd~ 878 (988)
+|.++..+|+- +.|+..|...+..+|
T Consensus 206 la~~~~~~g~~----~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 206 QAACHMAQGRW----EAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHHHTTCH----HHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCH----HHHHHHHHHHHHhCC
Confidence 44455555554 455555555554444
No 69
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=84.78 E-value=51 Score=36.21 Aligned_cols=215 Identities=10% Similarity=-0.041 Sum_probs=113.4
Q ss_pred cccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch--HHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCC
Q psy6893 649 IHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--VINDYLLGQVKDATNEMVRHGGCLGLGLAAMGS 726 (988)
Q Consensus 649 Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs 726 (988)
...|+.++++..+...+.. ++. ..+++.+|.++...+. +++..+...+...++.. .+...+|.++...
T Consensus 248 ~~~~~~~~A~~~~~~~l~~-----~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIEL-----FPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS---SVYYHRGQMNFIL 317 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHH-----CCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT---HHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHhh-----Ccc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCH---HHHHHHHHHHHHh
Confidence 3467888888888877641 122 6666777766655543 34444444333222211 1344555555444
Q ss_pred CC-HHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHH
Q psy6893 727 AR-DDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLV 805 (988)
Q Consensus 727 ~~-~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li 805 (988)
++ ++....+...+..++... .+-..+|.++.-.++.+-...++.-+.........-...+|..+...|+.+.+...+
T Consensus 318 ~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPENI--FPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSSCS--HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChhhH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44 334555555443333221 234456666666667655444443333322222233445555566778888777777
Q ss_pred HHHhcccchhhh----hhcHHHHHHHHcC---CCChhHHHHHHHHHHH---------hhhhhhhhhhhccCCCchHHHHH
Q psy6893 806 RDLCEEKDAILR----RSGMYTIAMAYCG---SGSNVATKRLLHDAIL---------RRSGMYTIAMAYCGSGSNVATKR 869 (988)
Q Consensus 806 ~~L~~~~dp~~r----~~~~~~lslAyaG---tGnvl~iq~lL~~~~~---------~~lG~alia~g~~~tgn~~air~ 869 (988)
+........... ....+.++..|.. .|+.....+.+..+.. ..+|.++..+|+. ..|+..
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~----~~A~~~ 471 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDI----DEAITL 471 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----HHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCH----HHHHHH
Confidence 665543211111 1245667777777 7887777776666553 3455565555554 455555
Q ss_pred hhhhhccCCC
Q psy6893 870 LLHVAVSDVN 879 (988)
Q Consensus 870 ll~~~~sd~~ 879 (988)
+-..+..+|+
T Consensus 472 ~~~a~~~~~~ 481 (514)
T 2gw1_A 472 FEESADLART 481 (514)
T ss_dssp HHHHHHHCSS
T ss_pred HHHHHHhccc
Confidence 5555544553
No 70
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=84.50 E-value=6.7 Score=41.46 Aligned_cols=237 Identities=8% Similarity=-0.002 Sum_probs=112.5
Q ss_pred HHHhhcccchhhhhhhhcccccCChHHHHH-HHhhcCCCCCCCCCccchhhHHHHHhhhccCCc--hHHHHHHHHHhhhc
Q psy6893 630 WLARATNWAKLTATASLGVIHRGHETEALA-HMQSYLPRETGPTSGYYEGGGLYALGLIHANHG--AVINDYLLGQVKDA 706 (988)
Q Consensus 630 wl~k~~~w~kfsA~ASLG~Ih~gn~~~~l~-~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~--~~~~~~Ll~~l~~s 706 (988)
|-.-...|..+.....-.....|+.++++. .+.+-+.- ...+++...-+++.+|.+....+ .+++..+...+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 94 (368)
T 1fch_A 17 WDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQF--EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD 94 (368)
T ss_dssp -----------------------------CHHHHCCCCC--CSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHhhhhhHHHhc--CCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 433334454443333223445567888887 77765532 13345555566666666655544 45666665555433
Q ss_pred CchhhHHHHHHhhHhhhcCCCCH-HHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcc-cc-hhh
Q psy6893 707 TNEMVRHGGCLGLGLAAMGSARD-DIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQ-HE-KIL 783 (988)
Q Consensus 707 ~~~~ir~gA~LGLGla~~Gs~~~-dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq-~e-~i~ 783 (988)
++. ..+...+|.++...++. +....+...+..++... .+-..+|.++...++.+-...+++-+.... .. ...
T Consensus 95 p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 169 (368)
T 1fch_A 95 PKH---MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ--TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLV 169 (368)
T ss_dssp TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGC
T ss_pred CCC---HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 322 23556777777777764 45555555553333222 233455555555666554444333322211 11 111
Q ss_pred hHH--------------HHHHHHHhcCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHH---
Q psy6893 784 RGL--------------AVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAIL--- 846 (988)
Q Consensus 784 R~l--------------algLgLi~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~--- 846 (988)
... .++..+ ..|+.+.+...++...............+.++..|...|+.......+..+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 248 (368)
T 1fch_A 170 TPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 248 (368)
T ss_dssp C---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 111 233322 55677777766666554322211223346678888888999887777777654
Q ss_pred ------hhhhhhhhhhhccCCCchHHHHHhhhhhccCC
Q psy6893 847 ------RRSGMYTIAMAYCGSGSNVATKRLLHVAVSDV 878 (988)
Q Consensus 847 ------~~lG~alia~g~~~tgn~~air~ll~~~~sd~ 878 (988)
..+|.++..+|+- +.|+..+-..+..+|
T Consensus 249 ~~~~~~~~l~~~~~~~g~~----~~A~~~~~~al~~~~ 282 (368)
T 1fch_A 249 NDYLLWNKLGATLANGNQS----EEAVAAYRRALELQP 282 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHhCC
Confidence 4577777777665 667777766665555
No 71
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=84.40 E-value=7.3 Score=40.02 Aligned_cols=161 Identities=16% Similarity=0.219 Sum_probs=77.5
Q ss_pred CCCccchhHHHHHhhhccCCC---CchhHHHHHHhhhhcC-CCchhHHHHHHHHHHHhhccCCC------hhHHHHHHHh
Q psy6893 310 TSGYYEGGGLYALGLIHANHG---AVINDYLLGQVKDATN-EDDAVTGEAAGIAMGLVLLGSKS------ESAIQDMVAY 379 (988)
Q Consensus 310 ~~~y~~~GaL~alGli~~g~~---~~~~d~l~~lL~~~~~-~d~~~~~~aA~lglGL~~~Gs~~------~~~~~~L~~~ 379 (988)
.+...|-+|+.+|+-+-.+++ ......+...|...+. ..+..++.+|.-++|..--+-+. +.++..|+..
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~ 106 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEK 106 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 356666777777755433321 1111223333333332 34567778888888866544332 2233444444
Q ss_pred hhhcchHHHHHHHHHHHHHHhc-CCh-hhHHHHHHHHhhcchhhhhccchhHHHHHhhhhhhhccccchhhHHhhccchh
Q psy6893 380 AKETQHEKILRGLAVGISFIMY-GQL-ENADDLVRDLCEEKDAILRRSGMYTIAMAYCVSYLYFDLFSDLTYRIVKNRSG 457 (988)
Q Consensus 380 ~~dt~~E~~~r~lalgl~~v~~-g~~-e~a~~li~~L~~~~d~~lr~~~~~~~~l~l~Lgll~~g~~~e~~l~~~~~~~~ 457 (988)
+.|.. ..++.+...++.-+.. ... +....+.+ .+.++++..|.. ...++
T Consensus 107 l~d~~-~~vr~~a~~aL~~~~~~~~~~~ll~~l~~-~l~~~~~~vr~~--~l~~l------------------------- 157 (242)
T 2qk2_A 107 FKEKK-PNVVTALREAIDAIYASTSLEAQQESIVE-SLSNKNPSVKSE--TALFI------------------------- 157 (242)
T ss_dssp GGCCC-HHHHHHHHHHHHHHHTTSCHHHHHHHHHH-HTTCSCHHHHHH--HHHHH-------------------------
T ss_pred HcCCC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHcCCChHHHHH--HHHHH-------------------------
Confidence 44543 3344444444443332 222 23333333 334556666653 11111
Q ss_pred HHHHHhhhccCC-----CH-HHHHHHHHHhccCCCchhhHHHHHHHHHHhh
Q psy6893 458 MYTIAMAYCGSG-----SN-VATKRLLHVAVSDVNDDVRREAVTALGFILF 502 (988)
Q Consensus 458 ~~~~~~AYaGTG-----N~-~~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~~ 502 (988)
...++..|.. .. ..+..|++ +.+|.+..||.+|..+||.|+.
T Consensus 158 --~~~l~~~~~~~~~~~~l~~l~p~l~~-~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 158 --ARALTRTQPTALNKKLLKLLTTSLVK-TLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp --HHHHTTCCGGGCCHHHHHHHHHHHHH-HHTSSCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHcCCCCccHHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHH
Confidence 1112222211 11 22333333 4477888899999999999983
No 72
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=83.88 E-value=34 Score=34.89 Aligned_cols=215 Identities=11% Similarity=0.056 Sum_probs=105.7
Q ss_pred cccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCC--chHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCC
Q psy6893 649 IHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANH--GAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGS 726 (988)
Q Consensus 649 Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~--~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs 726 (988)
...|+.++++..++..+... + . ...+++.+|.++... ..+++.++...+...++. ..+...+|.++...
T Consensus 32 ~~~~~~~~A~~~~~~~~~~~--~--~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 32 LKLANLAEAALAFEAVCQAA--P--E--REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD---IAVHAALAVSHTNE 102 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--T--T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHhC--C--C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC---HHHHHHHHHHHHHc
Confidence 45678888888887766311 1 1 234455555554443 344666555444333322 22455566666666
Q ss_pred CCH-HHHHHHHHhhccCChhhHHHHHH-----------Hh-hc-ccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHH
Q psy6893 727 ARD-DIYEQLKFNLYQDDAVTGEAAGI-----------AM-GL-VLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISF 792 (988)
Q Consensus 727 ~~~-dv~~~L~~~l~~D~~~~~e~Aal-----------Al-GL-I~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgL 792 (988)
++. ++...+...+..++........+ .+ |. ++...++.+-...+++-+.+...+...-...+|..+
T Consensus 103 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLY 182 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 553 34444444443222211101000 01 22 334433433333333322222222223344455556
Q ss_pred HhcCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHH---------hhhhhhhhhhhccCCCc
Q psy6893 793 IMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAIL---------RRSGMYTIAMAYCGSGS 863 (988)
Q Consensus 793 i~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~---------~~lG~alia~g~~~tgn 863 (988)
...|+.+.+...++......... ....+.++..|...|+.......+..+.. ..+|.++..+|+-
T Consensus 183 ~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~---- 256 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVELRPDD--AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY---- 256 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----
T ss_pred HHhccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH----
Confidence 67788888777777665432211 12345667777778888777777776653 3466666666654
Q ss_pred hHHHHHhhhhhccCC
Q psy6893 864 NVATKRLLHVAVSDV 878 (988)
Q Consensus 864 ~~air~ll~~~~sd~ 878 (988)
..|++.+-..+..+|
T Consensus 257 ~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQV 271 (327)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC
Confidence 455555544443333
No 73
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=83.73 E-value=8.2 Score=40.89 Aligned_cols=151 Identities=17% Similarity=0.084 Sum_probs=91.2
Q ss_pred CCCHHHHHHHHHhhccCChhhH-HHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhh--hHHHHHHHHHhc-CCchhH
Q psy6893 726 SARDDIYEQLKFNLYQDDAVTG-EAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKIL--RGLAVGISFIMY-GQLENA 801 (988)
Q Consensus 726 s~~~dv~~~L~~~l~~D~~~~~-e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~--R~lalgLgLi~~-Gr~e~a 801 (988)
+.+.+-...|...|..++.... -.|+.++|.. +.+.+++..|...+ .+++.|. -.++..++-+.. -..+..
T Consensus 66 ~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~---~~~~~~L~~ir~~v--a~D~~WrVre~lA~a~~~~~~~~~pe~~ 140 (240)
T 3l9t_A 66 SNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL---SKDKEILIFMRDEV--SKDNNWRVQEVLAKAFDEFCKKIEYKKA 140 (240)
T ss_dssp HSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT---TTSHHHHHHHHHTG--GGCSCHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred hCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc---cCcHHHHHHHHHHh--CCCCCccHHHHHHHHHHHHHHhcCHHHH
Confidence 3333333344444555554443 3677788876 35566665555422 2233443 344555544432 233445
Q ss_pred HHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHHhhhhhhhhhhhccCCCchHHHHHhhhhhccCCChh
Q psy6893 802 DDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAILRRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDD 881 (988)
Q Consensus 802 ~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~~~lG~alia~g~~~tgn~~air~ll~~~~sd~~~~ 881 (988)
-.++.....++++..|...+ +++- .++. . ... .-++.-+-.++.-+..|++..
T Consensus 141 l~~~~~W~~d~n~~VRR~As--e~~r--------------------pW~~--~-~~~--k~dp~~ll~iL~~L~~D~s~y 193 (240)
T 3l9t_A 141 LPIIDEWLKSSNLHTRRAAT--EGLR--------------------IWTN--R-PYF--KENPNEAIRRIADLKEDVSEY 193 (240)
T ss_dssp HHHHHHHHHCSSHHHHHHHH--HHTC--------------------SGGG--S-TTT--TTCHHHHHHHHHTTTTCSCHH
T ss_pred HHHHHHHhcCCCHHHHHHHH--HhhH--------------------HHhc--c-chh--hcCHHHHHHHHHHhcCChHHH
Confidence 56777888889998888733 2210 0111 0 111 356666777777789999999
Q ss_pred hhhhHHhhhhhhhhhhhhhhHhhhhhh
Q psy6893 882 VRREAVTALGFILFRKKRTRRKKKKGA 908 (988)
Q Consensus 882 vrraa~~alg~i~~~npeq~pk~~k~~ 908 (988)
||++++.+|-=+...+|+-+....++-
T Consensus 194 VrKSVan~LrD~SK~~Pd~V~~~~~~w 220 (240)
T 3l9t_A 194 VRKSVGNALRDISKKFPDLVKIELKNW 220 (240)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhhCHHHHHHHHHHh
Confidence 999999999999999999887776653
No 74
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=83.06 E-value=7.1 Score=42.36 Aligned_cols=131 Identities=12% Similarity=0.113 Sum_probs=76.4
Q ss_pred hHHHHH-HhhhhcCCCchhHHHHHHHHHHHhhccCCC-------hhHHHHHHHhhhhcchHHHHHHHHHHHHHHhcCChh
Q psy6893 334 NDYLLG-QVKDATNEDDAVTGEAAGIAMGLVLLGSKS-------ESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLE 405 (988)
Q Consensus 334 ~d~l~~-lL~~~~~~d~~~~~~aA~lglGL~~~Gs~~-------~~~~~~L~~~~~dt~~E~~~r~lalgl~~v~~g~~e 405 (988)
..+++. +|. ++++..++.|+-+||-+-.+.-. ..++..|+.++.+.....+++..+-.|..+..++.+
T Consensus 83 l~~Lv~~lL~----s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~ 158 (296)
T 1xqr_A 83 MHLLVGRYLE----AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158 (296)
T ss_dssp HHHHHHTTTT----CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHc----CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcH
Confidence 345555 554 45678889999999976554321 135577888887543444566666666667666655
Q ss_pred hHHH---------HHHHHhhcchhhhhccchhHHHHHhhhhhhhccccchhhHHhhccchhHHHHHhhhccCCC------
Q psy6893 406 NADD---------LVRDLCEEKDAILRRSGMYTIAMAYCVSYLYFDLFSDLTYRIVKNRSGMYTIAMAYCGSGS------ 470 (988)
Q Consensus 406 ~a~~---------li~~L~~~~d~~lr~~~~~~~~l~l~Lgll~~g~~~e~~l~~~~~~~~~~~~~~AYaGTGN------ 470 (988)
.... |++.| ...++.++.-+ +.+++|..+|+
T Consensus 159 ~~~~~~~~ggi~~L~~lL-~~~d~~v~~~A---------------------------------~~aLs~L~~~~~~~~~~ 204 (296)
T 1xqr_A 159 GLLQFLRLDGFSVLMRAM-QQQVQKLKVKS---------------------------------AFLLQNLLVGHPEHKGT 204 (296)
T ss_dssp HHHHHHHTTHHHHHHHHH-HSSCHHHHHHH---------------------------------HHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHCCCHHHHHHHH-cCCCHHHHHHH---------------------------------HHHHHHHHhCChHHHHH
Confidence 4433 33332 33344433321 11222222221
Q ss_pred ---HHHHHHHHHHhccCCCchhhHHHHHHHHHHhhc
Q psy6893 471 ---NVATKRLLHVAVSDVNDDVRREAVTALGFILFR 503 (988)
Q Consensus 471 ---~~~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~~~ 503 (988)
.-.|..|..++.+ .+.++|..|+.+|+-|+-+
T Consensus 205 vv~~g~i~~Lv~LL~~-~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 205 LCSMGMVQQLVALVRT-EHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHTTHHHHHHHHHTS-CCSTHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHcC-CChhHHHHHHHHHHHHHhC
Confidence 2256777777654 4778999999999999854
No 75
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=82.73 E-value=46 Score=39.67 Aligned_cols=56 Identities=13% Similarity=-0.046 Sum_probs=37.6
Q ss_pred HHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCC--ch-------HHHHHHHHHhhhcCchhhHHHHH
Q psy6893 657 ALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANH--GA-------VINDYLLGQVKDATNEMVRHGGC 716 (988)
Q Consensus 657 ~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~--~~-------~~~~~Ll~~l~~s~~~~ir~gA~ 716 (988)
++..|-..|. +.++.++--|..||+.|..+. .+ .++..|+..|....+..++.-|+
T Consensus 91 ~Ip~LV~LL~----s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa 155 (584)
T 3l6x_A 91 GIPVLVGLLD----HPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVIT 155 (584)
T ss_dssp HHHHHHHGGG----CSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHH
T ss_pred CcHHHHHHHC----CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHH
Confidence 5666777775 567889999999999997752 11 14777887776644444444444
No 76
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=81.74 E-value=13 Score=37.22 Aligned_cols=172 Identities=15% Similarity=0.036 Sum_probs=85.5
Q ss_pred cccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCC--chHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCC
Q psy6893 649 IHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANH--GAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGS 726 (988)
Q Consensus 649 Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~--~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs 726 (988)
...|+.++++..+...+..+ .. ...+++.+|.+.... ..+++..+..-+.-.++. ..+...||.++...
T Consensus 16 ~~~g~~~~A~~~~~~al~~~----p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~ 86 (217)
T 2pl2_A 16 YALGRYDAALTLFERALKEN----PQ--DPEALYWLARTQLKLGLVNPALENGKTLVARTPRY---LGGYMVLSEAYVAL 86 (217)
T ss_dssp HHTTCHHHHHHHHHHHHTTS----SS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHh
Confidence 34678889999988877421 11 244566666655444 345666665555433332 22444555555443
Q ss_pred -----------CC-HHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHh
Q psy6893 727 -----------AR-DDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIM 794 (988)
Q Consensus 727 -----------~~-~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~ 794 (988)
++ ++....+...+..++... .+-+.+|.++...|+.+-.....+-+.+.. +...-...+|..+..
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~ 163 (217)
T 2pl2_A 87 YRQAEDRERGKGYLEQALSVLKDAERVNPRYA--PLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLS 163 (217)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred hhhhhhhcccccCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHH
Confidence 32 334455555543333222 234456666666666554433333332222 333334456666677
Q ss_pred cCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCCh
Q psy6893 795 YGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSN 834 (988)
Q Consensus 795 ~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnv 834 (988)
.|+.+++...++...... |-. ....+.++..|...|+.
T Consensus 164 ~g~~~~A~~~~~~al~~~-P~~-~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 164 MGRLDEALAQYAKALEQA-PKD-LDLRVRYASALLLKGKA 201 (217)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTC-HHHHHHHHHHHTC----
T ss_pred cCCHHHHHHHHHHHHHhC-CCC-hHHHHHHHHHHHHccCH
Confidence 788877777766655432 211 11223445555554444
No 77
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=80.83 E-value=45 Score=37.04 Aligned_cols=185 Identities=9% Similarity=0.026 Sum_probs=104.5
Q ss_pred CChHHHHHHHhhcCCCCCCCCCc---cchhhHHHHHhhhccCCch--HHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCC
Q psy6893 652 GHETEALAHMQSYLPRETGPTSG---YYEGGGLYALGLIHANHGA--VINDYLLGQVKDATNEMVRHGGCLGLGLAAMGS 726 (988)
Q Consensus 652 gn~~~~l~~L~~yL~~~~~s~~~---~~k~GAL~AlGlI~ag~~~--~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs 726 (988)
++.++++..++..+... ++++ ...+-+++.+|.++...+. +++..+...+...++ ..+...+|.++.-.
T Consensus 216 ~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 289 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT----PNSYIFLALTLADK 289 (537)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----HHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHh
Confidence 46677888877776421 1221 2245677777877655543 456665555444333 34666777787777
Q ss_pred CC-HHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHH
Q psy6893 727 AR-DDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLV 805 (988)
Q Consensus 727 ~~-~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li 805 (988)
++ ++....+...+..++... .+-+.+|.++...++.+-....+.-+.....+...-...+|..+...|+.+.+...+
T Consensus 290 ~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 367 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLNPEYP--PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFF 367 (537)
T ss_dssp SCCHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 65 445555555553333221 233455666666666655444444333322222333445566667788888887777
Q ss_pred HHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHH
Q psy6893 806 RDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAIL 846 (988)
Q Consensus 806 ~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~ 846 (988)
+......... ....+.++..|...|+.......+..+..
T Consensus 368 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 368 NETKLKFPTL--PEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHCTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7765442111 12345567778888888887777777654
No 78
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=80.72 E-value=12 Score=37.30 Aligned_cols=157 Identities=10% Similarity=0.017 Sum_probs=77.1
Q ss_pred HHHHHhhhcc--CCchHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCH-HHHHHHHHhhccCChhhHHHHHHHhhc
Q psy6893 680 GLYALGLIHA--NHGAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARD-DIYEQLKFNLYQDDAVTGEAAGIAMGL 756 (988)
Q Consensus 680 AL~AlGlI~a--g~~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~-dv~~~L~~~l~~D~~~~~e~AalAlGL 756 (988)
+++.+|.+.. |...+++..+..-+...++. ..+...+|.++...++. +....+...+..++... .+-+.+|.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~lg~ 81 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQD---PEALYWLARTQLKLGLVNPALENGKTLVARTPRYL--GGYMVLSE 81 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHH
Confidence 4444454433 34455676665555433322 34566777777776663 45555555554344322 12233444
Q ss_pred ccCCC-----------CCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHHhcccchhhhhhcHHHHH
Q psy6893 757 VLLGS-----------KSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIA 825 (988)
Q Consensus 757 I~vGs-----------~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~ls 825 (988)
++... |+.+-....++-+.+...+...-...+|..+...|+.+++...++...... . .....+.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~--~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D--TPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C--CHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c--chHHHHHHH
Confidence 43332 333322222222222222223334556666777888888777777655443 1 122234556
Q ss_pred HHHcCCCChhHHHHHHHHH
Q psy6893 826 MAYCGSGSNVATKRLLHDA 844 (988)
Q Consensus 826 lAyaGtGnvl~iq~lL~~~ 844 (988)
..|...|+...-...+..+
T Consensus 159 ~~~~~~g~~~~A~~~~~~a 177 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKA 177 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 6666655654444444443
No 79
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=79.84 E-value=19 Score=35.28 Aligned_cols=26 Identities=12% Similarity=-0.105 Sum_probs=11.7
Q ss_pred hhhhhhhhhccCCCchHHHHHhhhhhccCC
Q psy6893 849 SGMYTIAMAYCGSGSNVATKRLLHVAVSDV 878 (988)
Q Consensus 849 lG~alia~g~~~tgn~~air~ll~~~~sd~ 878 (988)
+|.++..+|+. ..|+..+-..+..+|
T Consensus 199 la~~~~~~~~~----~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 199 AGVTYAYKENR----EKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHTTCT----THHHHHHHHHHHHCT
T ss_pred HHHHHHHccCH----HHHHHHHHHHHccCc
Confidence 44444444443 344444444444444
No 80
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=79.51 E-value=0.37 Score=61.80 Aligned_cols=8 Identities=0% Similarity=-0.018 Sum_probs=0.0
Q ss_pred HHHhhhhh
Q psy6893 867 TKRLLHVA 874 (988)
Q Consensus 867 ir~ll~~~ 874 (988)
|..+-++.
T Consensus 29 ~~p~~~~~ 36 (1108)
T 3l9o_A 29 IDPFTEFM 36 (1108)
T ss_dssp --------
T ss_pred Ccchhhcc
Confidence 44444444
No 81
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=79.05 E-value=56 Score=33.22 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=19.2
Q ss_pred ccCCChhhhhhHHhhhhhhhhhhh
Q psy6893 875 VSDVNDDVRREAVTALGFILFRKK 898 (988)
Q Consensus 875 ~sd~~~~vrraa~~alg~i~~~np 898 (988)
..|++..||.+|..++|.+...-+
T Consensus 185 l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 185 LNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred hcCCChHHHHHHHHHHHHHHHHcC
Confidence 467899999999999988775433
No 82
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=78.32 E-value=47 Score=32.74 Aligned_cols=152 Identities=11% Similarity=0.053 Sum_probs=69.7
Q ss_pred ccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCc--hHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCC
Q psy6893 650 HRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHG--AVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSA 727 (988)
Q Consensus 650 h~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~--~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~ 727 (988)
..|+.++++..+...+... ... .-+++.+|.+....+ .+++.++...+...++. ..+...+|.++...+
T Consensus 49 ~~~~~~~A~~~~~~al~~~----~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 49 QRGNTEQAKVPLRKALEID----PSS--ADAHAALAVVFQTEMEPKLADEEYRKALASDSRN---ARVLNNYGGFLYEQK 119 (252)
T ss_dssp HTTCTGGGHHHHHHHHHHC----TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTT
T ss_pred HcCChHHHHHHHHHHHhcC----CCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---HHHHHHHHHHHHHHh
Confidence 3466667777776655310 111 345555555544333 34555554444332221 224455566665555
Q ss_pred CH-HHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHH
Q psy6893 728 RD-DIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVR 806 (988)
Q Consensus 728 ~~-dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~ 806 (988)
+. ++...+...+..........+-+.+|.++...++.+-...++.-..........-...++..+...|+.+.+...++
T Consensus 120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 199 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYD 199 (252)
T ss_dssp CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 53 34444444442001111112334455555555565544333333322222222223444444566677777777776
Q ss_pred HHhc
Q psy6893 807 DLCE 810 (988)
Q Consensus 807 ~L~~ 810 (988)
....
T Consensus 200 ~~~~ 203 (252)
T 2ho1_A 200 LFAQ 203 (252)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6554
No 83
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=78.00 E-value=73 Score=36.08 Aligned_cols=79 Identities=8% Similarity=-0.076 Sum_probs=52.3
Q ss_pred HHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch--------HHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCC
Q psy6893 657 ALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--------VINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSAR 728 (988)
Q Consensus 657 ~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--------~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~ 728 (988)
++..|-.+|. ++++..+..|..+|.-+..++.. .++..|...+..+.+..++..|+-.|+-...+..+
T Consensus 45 ~i~~Lv~lL~----s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~ 120 (457)
T 1xm9_A 45 GICKLVDLLR----SPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120 (457)
T ss_dssp HHHHHHHHTT----SSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST
T ss_pred CHHHHHHHHc----CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHh
Confidence 5666777775 45677888899999988775322 13667777776466677888888888766655444
Q ss_pred HH-----HHHHHHHhh
Q psy6893 729 DD-----IYEQLKFNL 739 (988)
Q Consensus 729 ~d-----v~~~L~~~l 739 (988)
.+ ++..|..++
T Consensus 121 ~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 121 KEELIADALPVLADRV 136 (457)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHH
Confidence 43 334555555
No 84
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=77.83 E-value=7.6 Score=42.15 Aligned_cols=100 Identities=14% Similarity=0.085 Sum_probs=63.1
Q ss_pred HHHHHhh-cCCCCCCCCCccchhhHHHHHhhhccCCch--------HHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCC
Q psy6893 657 ALAHMQS-YLPRETGPTSGYYEGGGLYALGLIHANHGA--------VINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSA 727 (988)
Q Consensus 657 ~l~~L~~-yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--------~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~ 727 (988)
++..|-+ +|. ++++.++.-|+.+||.|..++.. .++..|+..+.++++..++..|+..|+-...|..
T Consensus 82 ~l~~Lv~~lL~----s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~ 157 (296)
T 1xqr_A 82 GMHLLVGRYLE----AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157 (296)
T ss_dssp HHHHHHHTTTT----CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc
Confidence 4445555 774 56788999999999999776542 2566777777655567788889998887655543
Q ss_pred C-------HHHHHHHHHhhccCChhhHHHHHHHhhcccCC
Q psy6893 728 R-------DDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLG 760 (988)
Q Consensus 728 ~-------~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vG 760 (988)
. ...+..|..+|.+++......|+.+++-+..|
T Consensus 158 ~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 2 12344566666544443344555565554433
No 85
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=77.70 E-value=67 Score=32.98 Aligned_cols=122 Identities=9% Similarity=-0.051 Sum_probs=52.5
Q ss_pred HhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHHhcccchhhhhh----------cHH
Q psy6893 753 AMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRS----------GMY 822 (988)
Q Consensus 753 AlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~~~~dp~~r~~----------~~~ 822 (988)
.+|.++.-.++.+-....++-+.+...+...-...+|..+...|+.+.+...++............. ..+
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHH
Confidence 3344444444544333333322222222222333444445556666666555555443221111100 011
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHH-------------hhhhhhhhhhhccCCCchHHHHHhhhhhccCC
Q psy6893 823 TIAMAYCGSGSNVATKRLLHDAIL-------------RRSGMYTIAMAYCGSGSNVATKRLLHVAVSDV 878 (988)
Q Consensus 823 ~lslAyaGtGnvl~iq~lL~~~~~-------------~~lG~alia~g~~~tgn~~air~ll~~~~sd~ 878 (988)
..+..|...|+.......+..+.. ..+|.++..+|+- +.|+..+-..+..+|
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----~~A~~~~~~~~~~~~ 303 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP----VEAIRICSEVLQMEP 303 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCH----HHHHHHHHHHHHhCc
Confidence 234455555666555555555443 1245555555543 455555555544444
No 86
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=77.39 E-value=45 Score=36.94 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=29.6
Q ss_pred HHHHHhhhhhccCCChhhhhhHHhhhhhhhhhhhhhhH
Q psy6893 865 VATKRLLHVAVSDVNDDVRREAVTALGFILFRKKRTRR 902 (988)
Q Consensus 865 ~air~ll~~~~sd~~~~vrraa~~alg~i~~~npeq~p 902 (988)
.+|..|..++.+ .++.+|+.|+.+|.-++..+|++..
T Consensus 305 G~i~~Lv~LL~s-~~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 305 GAVSMLKNLIHS-KHKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp THHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred CCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCCHHHHh
Confidence 467778888766 5889999999999989888887654
No 87
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=76.91 E-value=24 Score=35.82 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=45.2
Q ss_pred ccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch--HHHHHHHHHh---hhcCchhhHHHHHHhhHhh
Q psy6893 648 VIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--VINDYLLGQV---KDATNEMVRHGGCLGLGLA 722 (988)
Q Consensus 648 ~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--~~~~~Ll~~l---~~s~~~~ir~gA~LGLGla 722 (988)
....|+.++++..++..+.. .+.++...+-+++.+|.++...++ +++.++..-+ ....+.....-+...+|.+
T Consensus 15 ~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 34567778888887776642 123444456677777777665543 3444433222 2223344455566677777
Q ss_pred hcCCCCHH
Q psy6893 723 AMGSARDD 730 (988)
Q Consensus 723 ~~Gs~~~d 730 (988)
+.-.++.+
T Consensus 93 ~~~~g~~~ 100 (338)
T 3ro2_A 93 LKVLGNFD 100 (338)
T ss_dssp HHHTTCHH
T ss_pred HHHccCHH
Confidence 76666643
No 88
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=76.71 E-value=88 Score=33.78 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q psy6893 388 ILRGLAVGISFIMYGQLENADDLVRDLCE 416 (988)
Q Consensus 388 ~~r~lalgl~~v~~g~~e~a~~li~~L~~ 416 (988)
...-+.+|..+...|+.+.|..+++.+++
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~ 54 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVD 54 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44556677777788888888887777665
No 89
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=76.49 E-value=54 Score=31.22 Aligned_cols=153 Identities=12% Similarity=0.025 Sum_probs=78.0
Q ss_pred cccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCc--hHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCC
Q psy6893 649 IHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHG--AVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGS 726 (988)
Q Consensus 649 Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~--~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs 726 (988)
...|+.++++..+...+... + . ...+++.+|.++...+ .+++.++...+...++. ..+...+|.++...
T Consensus 19 ~~~~~~~~A~~~~~~~~~~~--~--~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 19 MRGQDYRQATASIEDALKSD--P--K--NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS---AEINNNYGWFLCGR 89 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--T--T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHhC--c--c--chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHh
Confidence 45688888988888776311 1 1 1345666666655443 34555554444333221 22445666677666
Q ss_pred -CCH-HHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHH
Q psy6893 727 -ARD-DIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDL 804 (988)
Q Consensus 727 -~~~-dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~l 804 (988)
++. +....+...+..........+-+.+|.+....++.+-...++.-..+...+...-...++..+...|+.+.+...
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 169 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYY 169 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 653 445555554431011111133345555555556665444444333332222233344455556667888777777
Q ss_pred HHHHhc
Q psy6893 805 VRDLCE 810 (988)
Q Consensus 805 i~~L~~ 810 (988)
++....
T Consensus 170 ~~~~~~ 175 (225)
T 2vq2_A 170 FKKYQS 175 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
No 90
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=76.17 E-value=31 Score=33.63 Aligned_cols=184 Identities=11% Similarity=0.063 Sum_probs=85.2
Q ss_pred cccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccC--CchHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCC
Q psy6893 649 IHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHAN--HGAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGS 726 (988)
Q Consensus 649 Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag--~~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs 726 (988)
...|+.++++..+...+... ... .-+++.+|.+... ...+++..+...+...++. ..+...+|.++...
T Consensus 34 ~~~~~~~~A~~~~~~~l~~~----~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 34 SEFGDYEKAAEAFTKAIEEN----KED--AIPYINFANLLSSVNELERALAFYDKALELDSSA---ATAYYGAGNVYVVK 104 (243)
T ss_dssp --------CCTTHHHHHTTC----TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHT
T ss_pred HHhhCHHHHHHHHHHHHHhC----ccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc---hHHHHHHHHHHHHh
Confidence 34466666776666665311 111 3445555554433 3344555554444332221 23445566666655
Q ss_pred CCHH-HHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHH
Q psy6893 727 ARDD-IYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLV 805 (988)
Q Consensus 727 ~~~d-v~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li 805 (988)
++.+ +...+...+..++... .+-+.+|.+....++.+-...+++-+.....+...-...+|..+...|+.+.+...+
T Consensus 105 ~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAGMENG--DLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp TCHHHHHHHHHHHHHHTCCSH--HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5533 3344443332222111 123344444455556554444433332222222223344555566678877777777
Q ss_pred HHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHH
Q psy6893 806 RDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAI 845 (988)
Q Consensus 806 ~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~ 845 (988)
+......... ....+.++..|...|+.......+..+.
T Consensus 183 ~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 183 AAVTEQDPGH--ADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHCTTC--HHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHhCccc--HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 6655432211 1234567777778888877776666654
No 91
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=75.62 E-value=1.7e+02 Score=37.16 Aligned_cols=103 Identities=16% Similarity=0.231 Sum_probs=62.7
Q ss_pred hhcccchhhhhhhhcccccCChHHHHHHHhhcCCCCC-CCCC--ccchhhHHHHHhhhccCCchHHHHHHHHHhhhc-Cc
Q psy6893 633 RATNWAKLTATASLGVIHRGHETEALAHMQSYLPRET-GPTS--GYYEGGGLYALGLIHANHGAVINDYLLGQVKDA-TN 708 (988)
Q Consensus 633 k~~~w~kfsA~ASLG~Ih~gn~~~~l~~L~~yL~~~~-~s~~--~~~k~GAL~AlGlI~ag~~~~~~~~Ll~~l~~s-~~ 708 (988)
+...+.+..+.-.||-+.. + .++..|.+|++... ...+ .-++--|+.||-.+.+.+...+-..|+..+.+. .+
T Consensus 451 ~~~~~~~~~~LkaLGN~g~--p-~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~il~~i~~n~~e~ 527 (1056)
T 1lsh_A 451 RAKEEEIVLALKALGNAGQ--P-NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFLNVAIK 527 (1056)
T ss_dssp TTCHHHHHHHHHHHHHHTC--G-GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHHHHHCTTSC
T ss_pred cCChHHHHHHHHHhhccCC--h-hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHHHHHHhcCCCCC
Confidence 3334455666666666554 3 47888889986310 1122 235577888888887766555666666655544 34
Q ss_pred hhhHHHHHHhhHhhhcCC-CCHHHHHHHHHhhccC
Q psy6893 709 EMVRHGGCLGLGLAAMGS-ARDDIYEQLKFNLYQD 742 (988)
Q Consensus 709 ~~ir~gA~LGLGla~~Gs-~~~dv~~~L~~~l~~D 742 (988)
..+|+.|++-| |-+ .....+..+...+..|
T Consensus 528 ~EvRiaA~~~L----m~t~P~~~~l~~ia~~l~~E 558 (1056)
T 1lsh_A 528 SELRIRSCIVF----FESKPSVALVSMVAVRLRRE 558 (1056)
T ss_dssp HHHHHHHHHHH----HHTCCCHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHH----HHHCcCHHHHHHHHHHHhhC
Confidence 67888888877 333 3455666666666443
No 92
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=75.54 E-value=17 Score=38.61 Aligned_cols=57 Identities=16% Similarity=0.245 Sum_probs=26.4
Q ss_pred HHHHHhcCCchhHHHHHHHHhc----ccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHH
Q psy6893 789 GISFIMYGQLENADDLVRDLCE----EKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAI 845 (988)
Q Consensus 789 gLgLi~~Gr~e~a~~li~~L~~----~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~ 845 (988)
|..+...|+.+.+...++.... ..++.......+.++..|...|+.....+.+..+.
T Consensus 234 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3334445555555444443321 22222223334455555666666655555554443
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=75.14 E-value=21 Score=36.09 Aligned_cols=75 Identities=5% Similarity=-0.030 Sum_probs=42.6
Q ss_pred ccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch--HHHHHHHHHhhhcCchhhHHHHHHhhHhhhcC
Q psy6893 648 VIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--VINDYLLGQVKDATNEMVRHGGCLGLGLAAMG 725 (988)
Q Consensus 648 ~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~G 725 (988)
....|+.++|+..+...+... +.+ ....-+++.+|.++...+. +++.++...+...++.....-+...+|.++..
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~--p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~ 101 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYG--RTH-EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYK 101 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGC--SCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC--CCC-cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHH
Confidence 445677888888888777421 111 1235566777766655443 46666655554433333444566677777654
No 94
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=74.74 E-value=34 Score=32.71 Aligned_cols=127 Identities=13% Similarity=0.008 Sum_probs=59.6
Q ss_pred hhHHHHHhhhccCC--chHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCH-HHHHHHHHhhccCChhhHHHHHHHh
Q psy6893 678 GGGLYALGLIHANH--GAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARD-DIYEQLKFNLYQDDAVTGEAAGIAM 754 (988)
Q Consensus 678 ~GAL~AlGlI~ag~--~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~-dv~~~L~~~l~~D~~~~~e~AalAl 754 (988)
.-+++.+|.+.... ..+++..+...+...++. ..+...+|.++...++. +..+.+...+..++... .+-..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l 82 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN---ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA--EINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHHH
Confidence 34455555554433 344666655444333322 23455666666666653 34444444433222211 233345
Q ss_pred hcccCCC-CCHHHHHHHHHHHHh--cccchhhhHHHHHHHHHhcCCchhHHHHHHHHh
Q psy6893 755 GLVLLGS-KSESAIQDMVAYAKE--TQHEKILRGLAVGISFIMYGQLENADDLVRDLC 809 (988)
Q Consensus 755 GLI~vGs-~n~d~i~~ll~~~~e--tq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~ 809 (988)
|.++... ++.+-...+++-+.+ .......-...+|..+...|+.+.+...++...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555 565544444433333 111222233445555566677766666665544
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=74.50 E-value=12 Score=37.94 Aligned_cols=47 Identities=9% Similarity=-0.082 Sum_probs=24.8
Q ss_pred hhhhhhcccc--cCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccC
Q psy6893 641 TATASLGVIH--RGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHAN 690 (988)
Q Consensus 641 sA~ASLG~Ih--~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag 690 (988)
.+-..+|.++ .|+.++|+..++.++.. ++++ ....-+++.+|.++..
T Consensus 53 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~-~~~~~a~~~lg~~~~~ 101 (261)
T 3qky_A 53 DAQFYLARAYYQNKEYLLAASEYERFIQI--YQID-PRVPQAEYERAMCYYK 101 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCC-chhHHHHHHHHHHHHH
Confidence 3445555554 46677777777766631 1111 1234566666666543
No 96
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=74.18 E-value=20 Score=32.98 Aligned_cols=52 Identities=17% Similarity=0.078 Sum_probs=23.8
Q ss_pred ccchhhHHHHHhhhccCCc--hHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCC
Q psy6893 674 GYYEGGGLYALGLIHANHG--AVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSAR 728 (988)
Q Consensus 674 ~~~k~GAL~AlGlI~ag~~--~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~ 728 (988)
+..+.-+++.+|.+....+ .+++..+...+...++. ..+...+|.++.-.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 57 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD---VDVALHLGIAYVKTGA 57 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC---HHHHHHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC---hHHHHHHHHHHHHcCC
Confidence 3445556666665554433 33555444333222221 2344455555555554
No 97
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=74.12 E-value=41 Score=35.57 Aligned_cols=217 Identities=12% Similarity=0.015 Sum_probs=113.0
Q ss_pred cccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch--HHHHHHHHH---hhhcCchhhHHHHHHhhHhhh
Q psy6893 649 IHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--VINDYLLGQ---VKDATNEMVRHGGCLGLGLAA 723 (988)
Q Consensus 649 Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--~~~~~Ll~~---l~~s~~~~ir~gA~LGLGla~ 723 (988)
...|+.++++..++..+.. .+.++...+-+++.+|.++...++ +++.++..- .....+......+...+|.++
T Consensus 20 ~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 97 (406)
T 3sf4_A 20 CKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 97 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4567888888888776642 123444456677777777665543 344443332 222234455566777788887
Q ss_pred cCCCCHH-HHHHHHHhhcc----CChhhHHHHHHHhhcccCCCCC--------------------HH-HHHHH---HHHH
Q psy6893 724 MGSARDD-IYEQLKFNLYQ----DDAVTGEAAGIAMGLVLLGSKS--------------------ES-AIQDM---VAYA 774 (988)
Q Consensus 724 ~Gs~~~d-v~~~L~~~l~~----D~~~~~e~AalAlGLI~vGs~n--------------------~d-~i~~l---l~~~ 774 (988)
.-.++.+ ....+...+.. .+......+-..+|.++.-.++ .+ ++..+ +.+.
T Consensus 98 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 177 (406)
T 3sf4_A 98 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV 177 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 7666644 33333333211 1111111233455555544444 22 22222 2222
Q ss_pred Hhcccchhh--hHHHHHHHHHhcCCchhHHHHHHHHhc----ccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHH--
Q psy6893 775 KETQHEKIL--RGLAVGISFIMYGQLENADDLVRDLCE----EKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAIL-- 846 (988)
Q Consensus 775 ~etq~e~i~--R~lalgLgLi~~Gr~e~a~~li~~L~~----~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~-- 846 (988)
....+.... -...+|..+...|+.+.+...++.... ..++.......+.++..|...|+.......+..+..
T Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 178 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 222222221 233444445567888776666555442 233333334566778888888998887777766553
Q ss_pred -------------hhhhhhhhhhhccCCCchHHHHHhh
Q psy6893 847 -------------RRSGMYTIAMAYCGSGSNVATKRLL 871 (988)
Q Consensus 847 -------------~~lG~alia~g~~~tgn~~air~ll 871 (988)
..+|.++..+|+- ..|++.+.
T Consensus 258 ~~~~~~~~~~~~~~~la~~~~~~g~~----~~A~~~~~ 291 (406)
T 3sf4_A 258 RQLKDRAVEAQSCYSLGNTYTLLQDY----EKAIDYHL 291 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHH
T ss_pred HhCcCchHHHHHHHHHHHHHHHhCcH----HHHHHHHH
Confidence 2456666666654 44444443
No 98
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=73.67 E-value=51 Score=34.63 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=28.8
Q ss_pred CCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHH
Q psy6893 796 GQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAIL 846 (988)
Q Consensus 796 Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~ 846 (988)
|+.+++..+++.+... +|. .....+.++..|...|+.......+..++.
T Consensus 180 ~~~~eA~~~~~~~l~~-~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADK-CSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp THHHHHHHHHHHHHHH-SCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh-CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666666665543 221 122244566777777777777777766654
No 99
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=73.49 E-value=24 Score=33.40 Aligned_cols=126 Identities=16% Similarity=0.059 Sum_probs=70.9
Q ss_pred HHHHHhhhccCCch--HHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHH-HHHHHHHhhccCChhhHHHHHHHhhc
Q psy6893 680 GLYALGLIHANHGA--VINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDD-IYEQLKFNLYQDDAVTGEAAGIAMGL 756 (988)
Q Consensus 680 AL~AlGlI~ag~~~--~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~d-v~~~L~~~l~~D~~~~~e~AalAlGL 756 (988)
..+-+|.++...|+ +++.++..-+.-.++. ..+...+|.+|...++.+ ....+...+..++... .+-..+|.
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~ 81 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN---VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA--EAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH--HHHHHHHH
Confidence 45678887765554 4777776666544432 346778888887777744 3444444433222221 23344555
Q ss_pred ccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHHhc
Q psy6893 757 VLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCE 810 (988)
Q Consensus 757 I~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~~ 810 (988)
+..-.++.+.......-+.........-...+|..+...|+.++|....+....
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS 135 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 555666666555544444333333333445566666777888777766665544
No 100
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=72.81 E-value=73 Score=34.03 Aligned_cols=195 Identities=12% Similarity=0.045 Sum_probs=92.5
Q ss_pred cccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCc--hHHHHHHHHHh---hhcCchhhHHHHHHhhHhhh
Q psy6893 649 IHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHG--AVINDYLLGQV---KDATNEMVRHGGCLGLGLAA 723 (988)
Q Consensus 649 Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~--~~~~~~Ll~~l---~~s~~~~ir~gA~LGLGla~ 723 (988)
...|+.++++..+...+.. .+.++...+-+++.+|.++...+ .+++.++...+ ....+......+...+|.+|
T Consensus 59 ~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 136 (411)
T 4a1s_A 59 CNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTL 136 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 4456777777777766642 12334445566777776655443 33444433222 22233445555666777777
Q ss_pred cCCCCHH-HHHHHHHhhcc----CChhhHHHHHHHhhcccCCCCC-----------------HHH-HHHHH---HHHHhc
Q psy6893 724 MGSARDD-IYEQLKFNLYQ----DDAVTGEAAGIAMGLVLLGSKS-----------------ESA-IQDMV---AYAKET 777 (988)
Q Consensus 724 ~Gs~~~d-v~~~L~~~l~~----D~~~~~e~AalAlGLI~vGs~n-----------------~d~-i~~ll---~~~~et 777 (988)
.-.++.+ .+..+...+.. .+......+-..+|.++.-.++ .+- +..+- .+....
T Consensus 137 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~ 216 (411)
T 4a1s_A 137 KVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL 216 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence 6666533 33333322211 1111111233344555444444 222 22111 111111
Q ss_pred ccchhh--hHHHHHHHHHhcCCchhHHHHHHHHhcc----cchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHH
Q psy6893 778 QHEKIL--RGLAVGISFIMYGQLENADDLVRDLCEE----KDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAI 845 (988)
Q Consensus 778 q~e~i~--R~lalgLgLi~~Gr~e~a~~li~~L~~~----~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~ 845 (988)
.+.... -...+|..+...|+.+.+...++..... .++.......+.++..|.-.|+.....+.+..+.
T Consensus 217 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 217 GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 111111 2333444455567777666655544322 2332233345667777888888777666666554
No 101
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=72.62 E-value=29 Score=33.24 Aligned_cols=36 Identities=11% Similarity=0.089 Sum_probs=24.3
Q ss_pred hhhhhhhhhhccCCCchHHHHHhhhhhccCCChhhhhhHH
Q psy6893 848 RSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAV 887 (988)
Q Consensus 848 ~lG~alia~g~~~tgn~~air~ll~~~~sd~~~~vrraa~ 887 (988)
.+|.++..+|+. +.|+..|-+.+..+|++.++..|-
T Consensus 109 ~lg~~~~~lg~~----~eA~~~~~~al~l~~~~~~~~~A~ 144 (151)
T 3gyz_A 109 HTGQCQLRLKAP----LKAKECFELVIQHSNDEKLKIKAQ 144 (151)
T ss_dssp HHHHHHHHTTCH----HHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCH----HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 356666666665 777777777776678777765443
No 102
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=72.26 E-value=77 Score=31.10 Aligned_cols=162 Identities=12% Similarity=0.001 Sum_probs=83.7
Q ss_pred hhhHHHHHhhhccCCc--hHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHH-HHHHHHHhhccCChhhHHHHHHH
Q psy6893 677 EGGGLYALGLIHANHG--AVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDD-IYEQLKFNLYQDDAVTGEAAGIA 753 (988)
Q Consensus 677 k~GAL~AlGlI~ag~~--~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~d-v~~~L~~~l~~D~~~~~e~AalA 753 (988)
..-+++.+|.+....+ .+++..+...+...++. ..+...+|.++...++.+ +.+.+...+..++... .+-..
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~ 110 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS---ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA--RVLNN 110 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH--HHHHH
Confidence 3556666666554443 34566555444333222 235566677776666643 4444444443332221 22334
Q ss_pred hhcccCCCCCHHHHHHHHHHHHh--cccchhhhHHHHHHHHHhcCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCC
Q psy6893 754 MGLVLLGSKSESAIQDMVAYAKE--TQHEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGS 831 (988)
Q Consensus 754 lGLI~vGs~n~d~i~~ll~~~~e--tq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGt 831 (988)
+|.++.-.++.+-...+++-+.. .......-...+|..+...|+.+.+...++......... ....+.++..|...
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ--PSVALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHc
Confidence 45555555565544444443333 112222234455555677788888777777655432111 22245667777777
Q ss_pred CChhHHHHHHHHHH
Q psy6893 832 GSNVATKRLLHDAI 845 (988)
Q Consensus 832 Gnvl~iq~lL~~~~ 845 (988)
|+.......+..+.
T Consensus 189 g~~~~A~~~~~~~~ 202 (252)
T 2ho1_A 189 REYVPARQYYDLFA 202 (252)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 77766666666554
No 103
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=71.81 E-value=13 Score=40.13 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCchhHHHHHHHHhcc----cchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHH
Q psy6893 787 AVGISFIMYGQLENADDLVRDLCEE----KDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAI 845 (988)
Q Consensus 787 algLgLi~~Gr~e~a~~li~~L~~~----~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~ 845 (988)
.+|..+...|+.+.+...++..... .++.......+.++..|...|+.......+..+.
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 268 NLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344445556666555555443322 2222223334555666666666666555555544
No 104
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=71.72 E-value=76 Score=30.88 Aligned_cols=202 Identities=15% Similarity=0.016 Sum_probs=96.9
Q ss_pred ccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCc--hHHHHHHHHHhhhc----CchhhHHHHHHhhHhhh
Q psy6893 650 HRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHG--AVINDYLLGQVKDA----TNEMVRHGGCLGLGLAA 723 (988)
Q Consensus 650 h~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~--~~~~~~Ll~~l~~s----~~~~ir~gA~LGLGla~ 723 (988)
..|+.++|+..+...+.. . ....+++.+|.++...+ .+++.++...+... ++.....-+...+|.++
T Consensus 17 ~~~~~~~A~~~~~~a~~~----~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 17 KARQFDEAIEHYNKAWEL----H---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp HTTCHHHHHHHHHHHHHH----S---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh----h---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 457778888887776641 1 22445666665554443 34555444333211 12222345667777777
Q ss_pred cCCCCHH-HHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHH
Q psy6893 724 MGSARDD-IYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENAD 802 (988)
Q Consensus 724 ~Gs~~~d-v~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~ 802 (988)
...++.+ .+..+...+..++.. ..-..+|-. .+++..+-+.. ........-...+|..+...|+.+.+.
T Consensus 90 ~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~------~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~ 159 (258)
T 3uq3_A 90 HKLGDLKKTIEYYQKSLTEHRTA---DILTKLRNA------EKELKKAEAEA-YVNPEKAEEARLEGKEYFTKSDWPNAV 159 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCH---HHHHHHHHH------HHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCchh---HHHHHHhHH------HHHHHHHHHHH-HcCcchHHHHHHHHHHHHHhcCHHHHH
Confidence 7666643 444444444222211 011111111 12222111111 111122222334444455566666666
Q ss_pred HHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHH---------hhhhhhhhhhhccCCCchHHHHHhhhh
Q psy6893 803 DLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAIL---------RRSGMYTIAMAYCGSGSNVATKRLLHV 873 (988)
Q Consensus 803 ~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~---------~~lG~alia~g~~~tgn~~air~ll~~ 873 (988)
..++......... ....+.++..|...|+.....+.+..+.. ..+|.++..+|+. ..|+..+-..
T Consensus 160 ~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~a 233 (258)
T 3uq3_A 160 KAYTEMIKRAPED--ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEY----ASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----HHHHHHHHHH
T ss_pred HHHHHHHhcCccc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHH
Confidence 6666554332111 12244566666677777666666666553 3466666666664 4555555554
Q ss_pred h
Q psy6893 874 A 874 (988)
Q Consensus 874 ~ 874 (988)
+
T Consensus 234 ~ 234 (258)
T 3uq3_A 234 R 234 (258)
T ss_dssp H
T ss_pred H
Confidence 4
No 105
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=70.99 E-value=20 Score=37.52 Aligned_cols=133 Identities=14% Similarity=0.082 Sum_probs=76.0
Q ss_pred CChHHHHHHHhcccCCCCCCCCCccchhHHHHHhhhccCCC-Cchh-HHHHHH---hhhhcCCCchhHHHHHHHHHHHhh
Q psy6893 290 GHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHG-AVIN-DYLLGQ---VKDATNEDDAVTGEAAGIAMGLVL 364 (988)
Q Consensus 290 ~~~~~gl~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~-~~~~-d~l~~l---L~~~~~~d~~~~~~aA~lglGL~~ 364 (988)
.+..+-+..|.+.+-.+ ++..++..|+.++|.+..+.+ .... .|+..+ |-+.+......++.+|..++=-++
T Consensus 56 ~~~~~~~~~L~~~l~~D---~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~ 132 (249)
T 2qk1_A 56 QNYSNLLGIYGHIIQKD---ANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTIC 132 (249)
T ss_dssp CCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 45556777777777432 466788999999999887766 3344 454332 223333334667777777765555
Q ss_pred ccC------C-ChhHHHHHHHhhhhcch-HHHHHHHHHHHHHHhcCC----------hhhHHHHHHHHhhcchhhhhccc
Q psy6893 365 LGS------K-SESAIQDMVAYAKETQH-EKILRGLAVGISFIMYGQ----------LENADDLVRDLCEEKDAILRRSG 426 (988)
Q Consensus 365 ~Gs------~-~~~~~~~L~~~~~dt~~-E~~~r~lalgl~~v~~g~----------~e~a~~li~~L~~~~d~~lr~~~ 426 (988)
--. . -+++++.|++.+.+.+. .+....-.++-.+--.+. .+.+. .+..++.+.++.+|..+
T Consensus 133 ~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip-~l~~~l~D~~~~VR~aA 211 (249)
T 2qk1_A 133 KYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVP-IVIQIVNDTQPAIRTIG 211 (249)
T ss_dssp HHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHH-HHHHHHTCSSHHHHHHH
T ss_pred HHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH-HHHHHhcCCCHHHHHHH
Confidence 444 3 55788888888876543 111111122222222332 23333 34445577788888853
No 106
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=70.86 E-value=78 Score=35.80 Aligned_cols=61 Identities=15% Similarity=-0.084 Sum_probs=28.0
Q ss_pred hhhHHHHHhhhccC--Cc-hHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCH-HHHHHHHHhhc
Q psy6893 677 EGGGLYALGLIHAN--HG-AVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARD-DIYEQLKFNLY 740 (988)
Q Consensus 677 k~GAL~AlGlI~ag--~~-~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~-dv~~~L~~~l~ 740 (988)
..-+++.+|.+... .. .+++.++...+...++. ..+...||.+|...++. ++...+...+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 165 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL---VEAWNQLGEVYWKKGDVTSAHTCFSGALT 165 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555554443 33 44555554444333221 23455666666555553 33444444443
No 107
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=70.59 E-value=42 Score=35.07 Aligned_cols=160 Identities=13% Similarity=0.083 Sum_probs=80.4
Q ss_pred CCCccchhHHHHHhh-hccCCCC-----chhHHHHHHhhhhc-CCCchhHHHHHHHHHHHhhccCC--Ch--h----HHH
Q psy6893 310 TSGYYEGGGLYALGL-IHANHGA-----VINDYLLGQVKDAT-NEDDAVTGEAAGIAMGLVLLGSK--SE--S----AIQ 374 (988)
Q Consensus 310 ~~~y~~~GaL~alGl-i~~g~~~-----~~~d~l~~lL~~~~-~~d~~~~~~aA~lglGL~~~Gs~--~~--~----~~~ 374 (988)
+++..|-.|+.+|+- +-.|+.. .....++..|...+ ...+..++.+|.-++|..--|-+ +- . ++.
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp 107 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFT 107 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 355556666666666 5333221 12234455555555 33456778889989887665444 11 2 233
Q ss_pred HHHHhhhhcchHHHHHHHHHHHHHHhcC--------ChhhHHHHHHHHhhcchhhhhccchhHHHHHhhhhhhhccccch
Q psy6893 375 DMVAYAKETQHEKILRGLAVGISFIMYG--------QLENADDLVRDLCEEKDAILRRSGMYTIAMAYCVSYLYFDLFSD 446 (988)
Q Consensus 375 ~L~~~~~dt~~E~~~r~lalgl~~v~~g--------~~e~a~~li~~L~~~~d~~lr~~~~~~~~l~l~Lgll~~g~~~e 446 (988)
.|+..+.|....+.-++...-..++-.. -++..+.|++.| .++.+..|.++ ..|+
T Consensus 108 ~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l-~~k~~~vk~~a--l~~l-------------- 170 (249)
T 2qk1_A 108 PLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHM-KHKTPQIRMEC--TQLF-------------- 170 (249)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHT-TCSSHHHHHHH--HHHH--------------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHH-cCCChHHHHHH--HHHH--------------
Confidence 3444444444333222222223333333 234555555543 45567777642 1222
Q ss_pred hhHHhhccchhHHHHHhhhc-cCC--------CHHHHHHHHHHhccCCCchhhHHHHHHHHHHh
Q psy6893 447 LTYRIVKNRSGMYTIAMAYC-GSG--------SNVATKRLLHVAVSDVNDDVRREAVTALGFIL 501 (988)
Q Consensus 447 ~~l~~~~~~~~~~~~~~AYa-GTG--------N~~~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~ 501 (988)
..|+.. ++. ....|..|.+ +..|.+.+||.+|+.++|.|+
T Consensus 171 --------------~~~~~~~~~~~~~l~~~l~~~iip~l~~-~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 171 --------------NASMKEEKDGYSTLQRYLKDEVVPIVIQ-IVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp --------------HHHHHHCCSCSHHHHHHHTTTHHHHHHH-HHTCSSHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHcCCcchhHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHH
Confidence 111111 111 0122333333 447778889999999999998
No 108
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=70.46 E-value=1.2e+02 Score=32.45 Aligned_cols=213 Identities=8% Similarity=-0.070 Sum_probs=117.5
Q ss_pred ecCChHHHHHHHhcccCCCCCCCCCccchhHHHHHhhhccCCCC--chhHHHHHHhhhhcCCCc-hhHHHHHHHHHHHhh
Q psy6893 288 HRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--VINDYLLGQVKDATNEDD-AVTGEAAGIAMGLVL 364 (988)
Q Consensus 288 h~~~~~~gl~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~~--~~~d~l~~lL~~~~~~d~-~~~~~aA~lglGL~~ 364 (988)
..++.++++..+.+-+.--...+++...+-+++.+|.++...+. ....++...+.-....++ ......+-..||.+|
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF 194 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 34677777777776654211113445577888888888776653 122333222222222222 333445667889999
Q ss_pred ccCCChh-HHHH---HHHhhhhcch--HHHHHHHHHHHHHHhcCChhhHHHHHHHHhhcchhhhhccchhHHHHHhhhhh
Q psy6893 365 LGSKSES-AIQD---MVAYAKETQH--EKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCVSY 438 (988)
Q Consensus 365 ~Gs~~~~-~~~~---L~~~~~dt~~--E~~~r~lalgl~~v~~g~~e~a~~li~~L~~~~d~~lr~~~~~~~~l~l~Lgl 438 (988)
...++-+ +++. .+.+..+... .....-..+|.+....|+.+.|....+..++-....-.. +........||.
T Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~ 272 (383)
T 3ulq_A 195 LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL--PSLPQAYFLITQ 272 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG--GGHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHH
Confidence 9888765 3332 3333333332 224556678888999999998888877766521111110 011112234555
Q ss_pred hhcccc----chhhHH-h------hccchh---HHHHHhhhccCCCHHHHHHHHHHhccCCCchhhHHHHHHHHHHhh
Q psy6893 439 LYFDLF----SDLTYR-I------VKNRSG---MYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILF 502 (988)
Q Consensus 439 l~~g~~----~e~~l~-~------~~~~~~---~~~~~~AYaGTGN~~~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~~ 502 (988)
+++..+ +...++ + ...|.. ....+..|...|+...+++-+.++...........+...||.+..
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 555544 222221 1 223322 226788899999987778888877665444444455556666664
No 109
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=70.38 E-value=59 Score=32.80 Aligned_cols=161 Identities=11% Similarity=0.017 Sum_probs=81.6
Q ss_pred ccCChHHHHHHHhhcCCCC--CCCCCccchhhHHHHHhhhccCCc--hHHHHHHHHHhhhc-----CchhhHHHHHHhhH
Q psy6893 650 HRGHETEALAHMQSYLPRE--TGPTSGYYEGGGLYALGLIHANHG--AVINDYLLGQVKDA-----TNEMVRHGGCLGLG 720 (988)
Q Consensus 650 h~gn~~~~l~~L~~yL~~~--~~s~~~~~k~GAL~AlGlI~ag~~--~~~~~~Ll~~l~~s-----~~~~ir~gA~LGLG 720 (988)
..|+.++++..+...+... ....+.....-+++.+|.++...+ .+++.++...+... .+......+...+|
T Consensus 39 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 118 (311)
T 3nf1_A 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLA 118 (311)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3567777777776655200 000123445566667777665544 34544443333211 22344556777788
Q ss_pred hhhcCCCCHH-HHHHHHHhhcc------CChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHh----c--c-cc-hhhhH
Q psy6893 721 LAAMGSARDD-IYEQLKFNLYQ------DDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKE----T--Q-HE-KILRG 785 (988)
Q Consensus 721 la~~Gs~~~d-v~~~L~~~l~~------D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~e----t--q-~e-~i~R~ 785 (988)
.+|...++.+ ....+...+.. .+......+-..+|.++...++.+-...+++-..+ . . +. ...-.
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 198 (311)
T 3nf1_A 119 VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTK 198 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 8887777643 33333333321 11111223455677777777776544443332222 1 1 11 11123
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHhc
Q psy6893 786 LAVGISFIMYGQLENADDLVRDLCE 810 (988)
Q Consensus 786 lalgLgLi~~Gr~e~a~~li~~L~~ 810 (988)
..++..+...|+.+.+...++....
T Consensus 199 ~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 199 NNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455556667888887777766554
No 110
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=69.96 E-value=1.2e+02 Score=33.14 Aligned_cols=155 Identities=9% Similarity=-0.101 Sum_probs=83.4
Q ss_pred hhHHHHHHhhHhhhcCCCCH-HHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHH-HHHHHHHHHHhcccchhhhHHH
Q psy6893 710 MVRHGGCLGLGLAAMGSARD-DIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSES-AIQDMVAYAKETQHEKILRGLA 787 (988)
Q Consensus 710 ~ir~gA~LGLGla~~Gs~~~-dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d-~i~~ll~~~~etq~e~i~R~la 787 (988)
.....+...+|.++...++. +++..+...+..++. ..+-+.+|.++.-.++.+ ++..+-..+ ........-...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~ 309 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR---VNSYIYMALIMADRNDSTEYYNYFDKAL-KLDSNNSSVYYH 309 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHTSSCCTTGGGHHHHHH-TTCTTCTHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc---HHHHHHHHHHHHHCCCHHHHHHHHHHHh-hcCcCCHHHHHH
Confidence 34455666777777766663 344555544433333 223334444444444433 333333322 222222223344
Q ss_pred HHHHHHhcCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHH---------hhhhhhhhhhhc
Q psy6893 788 VGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAIL---------RRSGMYTIAMAY 858 (988)
Q Consensus 788 lgLgLi~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~---------~~lG~alia~g~ 858 (988)
++..+...|+.+.+...++......... ....+.++..|.-.|+.....+.+..+.. ..+|.++..+|+
T Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 310 RGQMNFILQNYDQAGKDFDKAKELDPEN--IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKND 387 (514)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTCSSC--SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhChhh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC
Confidence 5555666788877777777665432221 22356677888888888887777777654 346666666665
Q ss_pred cCCCchHHHHHhhhhh
Q psy6893 859 CGSGSNVATKRLLHVA 874 (988)
Q Consensus 859 ~~tgn~~air~ll~~~ 874 (988)
- ..|++.+...+
T Consensus 388 ~----~~A~~~~~~a~ 399 (514)
T 2gw1_A 388 F----DKALKQYDLAI 399 (514)
T ss_dssp H----HHHHHHHHHHH
T ss_pred H----HHHHHHHHHHH
Confidence 4 45555554443
No 111
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=67.87 E-value=97 Score=30.46 Aligned_cols=23 Identities=13% Similarity=0.462 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCchhHHHHHHHHh
Q psy6893 787 AVGISFIMYGQLENADDLVRDLC 809 (988)
Q Consensus 787 algLgLi~~Gr~e~a~~li~~L~ 809 (988)
.+|..+...|+.+.+...++...
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444455566666655555444
No 112
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=67.82 E-value=1.5e+02 Score=32.69 Aligned_cols=213 Identities=10% Similarity=-0.059 Sum_probs=106.5
Q ss_pred ccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCc--hHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCC
Q psy6893 650 HRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHG--AVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSA 727 (988)
Q Consensus 650 h~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~--~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~ 727 (988)
..|+.++++..+...+.. ++. ..+++.+|.+....+ .+++.++...+...++. ..+...+|.++...+
T Consensus 255 ~~~~~~~A~~~~~~~~~~-----~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL-----HPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY---PPTYYHRGQMYFILQ 324 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH-----CCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTT
T ss_pred hcccHHHHHHHHHHHHhc-----CCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcC
Confidence 457888888888877641 122 456777777765554 34666655544433321 224566777776666
Q ss_pred CH-HHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHH
Q psy6893 728 RD-DIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVR 806 (988)
Q Consensus 728 ~~-dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~ 806 (988)
+. +....+...+..++... .+-+.+|.++.-.++.+-...+++-+.+...+...-...+|..+...|+.+.+...++
T Consensus 325 ~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPENV--YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 63 34445544443232221 2233445555555565544444443333222222233445655677788887777776
Q ss_pred HHhccc----chhhhhhcHHHHHHHHcCC----------CChhHHHHHHHHHHH---------hhhhhhhhhhhccCCCc
Q psy6893 807 DLCEEK----DAILRRSGMYTIAMAYCGS----------GSNVATKRLLHDAIL---------RRSGMYTIAMAYCGSGS 863 (988)
Q Consensus 807 ~L~~~~----dp~~r~~~~~~lslAyaGt----------Gnvl~iq~lL~~~~~---------~~lG~alia~g~~~tgn 863 (988)
...... +.....+..+..+..|... |+.......+..+.. ..+|.++..+|+.
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~---- 478 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKI---- 478 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH----
Confidence 654322 1222222234444444443 555455555544442 2355555555543
Q ss_pred hHHHHHhhhhhccCC
Q psy6893 864 NVATKRLLHVAVSDV 878 (988)
Q Consensus 864 ~~air~ll~~~~sd~ 878 (988)
..|+..+-..+..+|
T Consensus 479 ~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 479 DEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhCC
Confidence 444444444443333
No 113
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=67.57 E-value=66 Score=30.18 Aligned_cols=154 Identities=16% Similarity=0.097 Sum_probs=76.8
Q ss_pred hhhcccc--cCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch--HHHHHHHHHhhhcCchhhHHHHHHhh
Q psy6893 644 ASLGVIH--RGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--VINDYLLGQVKDATNEMVRHGGCLGL 719 (988)
Q Consensus 644 ASLG~Ih--~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--~~~~~Ll~~l~~s~~~~ir~gA~LGL 719 (988)
..||.++ .|+.++|+..++.-+.-+ | ...-+++.+|.++...+. +++..+...+...++. ..+...+
T Consensus 9 ~~lG~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ 79 (184)
T 3vtx_A 9 MDIGDKKRTKGDFDGAIRAYKKVLKAD-----P-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS---AEAYYIL 79 (184)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---HHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh---HHHHHHH
Confidence 3566665 488888888888877421 1 124567777777655443 3555554433333221 2234455
Q ss_pred HhhhcCCCCHH-HHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHH-HHHHHHHHHhcccchhhhHHHHHHHHHhcCC
Q psy6893 720 GLAAMGSARDD-IYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESA-IQDMVAYAKETQHEKILRGLAVGISFIMYGQ 797 (988)
Q Consensus 720 Gla~~Gs~~~d-v~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~-i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr 797 (988)
|..+.-..+.+ ..+.+...+..++... .+-..+|.++.-.++.+- ++.+-+.+ +...+...-...+|..+...|+
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYA--DAYYKLGLVYDSMGEHDKAIEAYEKTI-SIKPGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccch--HHHHHHHHHHHHhCCchhHHHHHHHHH-HhcchhhhHHHHHHHHHHHCCC
Confidence 55555555543 3333333332222221 233455666555556443 33333332 2222222234455555666777
Q ss_pred chhHHHHHHHHh
Q psy6893 798 LENADDLVRDLC 809 (988)
Q Consensus 798 ~e~a~~li~~L~ 809 (988)
.++|....+...
T Consensus 157 ~~~A~~~~~~al 168 (184)
T 3vtx_A 157 RDEAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 776666655443
No 114
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=66.63 E-value=59 Score=33.57 Aligned_cols=173 Identities=18% Similarity=0.214 Sum_probs=93.2
Q ss_pred HHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHHHHHHHHHhh----ccCChhhH-HHHHHHhhcccCCCCCHHHHHH
Q psy6893 695 INDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDDIYEQLKFNL----YQDDAVTG-EAAGIAMGLVLLGSKSESAIQD 769 (988)
Q Consensus 695 ~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~dv~~~L~~~l----~~D~~~~~-e~AalAlGLI~vGs~n~d~i~~ 769 (988)
+...|+..+.+. --.++-.|+--+-- +--..+++|+.+..-| ..+++++. +.-+-++|.+ .--+++.+..
T Consensus 33 ~l~~lI~~LDDD-lwtV~kNAl~vi~~--i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~l--a~i~Pe~v~~ 107 (253)
T 2db0_A 33 VLKKLIELLDDD-LWTVVKNAISIIMV--IAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQM--AKEKPELVKS 107 (253)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHHHHH--HHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH--HHHCHHHHHH
T ss_pred HHHHHHHHhccH-HHHHHHhHHHHHHH--HHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHH--HHhCHHHHHh
Confidence 445555444221 12355555544432 3445677776554443 23555543 3344455654 2236788887
Q ss_pred HHHHHHhcc---cchhhhHHHHHHHHHhcCCchhHHHHHHH---HhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHH
Q psy6893 770 MVAYAKETQ---HEKILRGLAVGISFIMYGQLENADDLVRD---LCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHD 843 (988)
Q Consensus 770 ll~~~~etq---~e~i~R~lalgLgLi~~Gr~e~a~~li~~---L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~ 843 (988)
++..+-..- +.++.-.++..|+=|.-.+++.+-.+.+. |.+++|-.-|.. ++.|+|
T Consensus 108 vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~-----aLnFi~------------- 169 (253)
T 2db0_A 108 MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLT-----ALNFIE------------- 169 (253)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHH-----HHHHHH-------------
T ss_pred hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHH-----HHHHHH-------------
Confidence 777654322 45555566666666666565554333332 223444333332 445554
Q ss_pred HHHhhhhhhhhhhhccCCCchHH---HHHhhhhhccCCChhhhhhHHhhhhhhhhhhhhhhHhh
Q psy6893 844 AILRRSGMYTIAMAYCGSGSNVA---TKRLLHVAVSDVNDDVRREAVTALGFILFRKKRTRRKK 904 (988)
Q Consensus 844 ~~~~~lG~alia~g~~~tgn~~a---ir~ll~~~~sd~~~~vrraa~~alg~i~~~npeq~pk~ 904 (988)
+||+. |-..+ +-+|..+ ..|.|.-||-.|+++|+-+...||.-.+-+
T Consensus 170 -----------alGen--~~~yv~PfLprL~aL-L~D~deiVRaSaVEtL~~lA~~npklRkii 219 (253)
T 2db0_A 170 -----------AMGEN--SFKYVNPFLPRIINL-LHDGDEIVRASAVEALVHLATLNDKLRKVV 219 (253)
T ss_dssp -----------TCCTT--THHHHGGGHHHHHGG-GGCSSHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred -----------HHhcc--CccccCcchHHHHHH-HcCcchhhhHHHHHHHHHHHHcCHHHHHHH
Confidence 55553 32222 2333334 456788899999999999999888844433
No 115
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=65.40 E-value=1.6e+02 Score=32.08 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHhccCC-CchhhHHHHHHHHHHhh
Q psy6893 470 SNVATKRLLHVAVSDV-NDDVRREAVTALGFILF 502 (988)
Q Consensus 470 N~~~Iq~LLhi~~s~~-~~dvrr~AV~~lg~I~~ 502 (988)
-...+..|+..+.+.. ++.+|..|+..|+.+.-
T Consensus 126 w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 3567888888776643 67789999999999884
No 116
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=64.69 E-value=29 Score=36.68 Aligned_cols=198 Identities=11% Similarity=0.088 Sum_probs=104.5
Q ss_pred CccchhhHHHHHhhhccCCc--hHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCH-HHHHHHHHhhccCChhhHHH
Q psy6893 673 SGYYEGGGLYALGLIHANHG--AVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARD-DIYEQLKFNLYQDDAVTGEA 749 (988)
Q Consensus 673 ~~~~k~GAL~AlGlI~ag~~--~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~-dv~~~L~~~l~~D~~~~~e~ 749 (988)
+++...-+++.+|.+....+ .+++..+...+...++. ..+...+|.++...++. ++...+...+..++... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~ 134 (365)
T 4eqf_A 60 NPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD---AEAWQFLGITQAENENEQAAIVALQRCLELQPNNL--K 134 (365)
T ss_dssp CTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--H
T ss_pred CcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--H
Confidence 34445555666666554443 45666665555433332 33567788888777774 34555555553333222 2
Q ss_pred HHHHhhcccCCCCCHHHHHHHHHHHHhcc-c-chhhhH--------HHHHHHHHhcCCchhHHHHHHHHhcccchhhhhh
Q psy6893 750 AGIAMGLVLLGSKSESAIQDMVAYAKETQ-H-EKILRG--------LAVGISFIMYGQLENADDLVRDLCEEKDAILRRS 819 (988)
Q Consensus 750 AalAlGLI~vGs~n~d~i~~ll~~~~etq-~-e~i~R~--------lalgLgLi~~Gr~e~a~~li~~L~~~~dp~~r~~ 819 (988)
+-..+|.++.-.++.+-...+.+-+.... . ...... ..++..+...|+.+.+...++.............
T Consensus 135 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 214 (365)
T 4eqf_A 135 ALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD 214 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHH
Confidence 33445555555556554433333222211 1 111111 1224445556677777777766654432211122
Q ss_pred cHHHHHHHHcCCCChhHHHHHHHHHHH---------hhhhhhhhhhhccCCCchHHHHHhhhhhccCCC
Q psy6893 820 GMYTIAMAYCGSGSNVATKRLLHDAIL---------RRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVN 879 (988)
Q Consensus 820 ~~~~lslAyaGtGnvl~iq~lL~~~~~---------~~lG~alia~g~~~tgn~~air~ll~~~~sd~~ 879 (988)
..+.++..|...|+.....+.+..+.. ..+|.++..+|+- +.|+..+-..+..+|+
T Consensus 215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----~~A~~~~~~al~~~p~ 279 (365)
T 4eqf_A 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS----EEAVEAYTRALEIQPG 279 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHhcCCC
Confidence 345677788888898888887777664 4577777777765 6777777666655654
No 117
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=62.83 E-value=37 Score=34.35 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCchhHHHHHHHHh----cccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHH
Q psy6893 787 AVGISFIMYGQLENADDLVRDLC----EEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAI 845 (988)
Q Consensus 787 algLgLi~~Gr~e~a~~li~~L~----~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~ 845 (988)
.+|..+...|+.+.+...++... ...++.......+.++..|...|+.......+..+.
T Consensus 228 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 228 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33444455566666655554433 222333333344556666666667666555555543
No 118
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=60.66 E-value=1.8e+02 Score=31.01 Aligned_cols=185 Identities=7% Similarity=-0.030 Sum_probs=99.7
Q ss_pred cccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch--HHHHHHHHHh---hhcCc-hhhHHHHHHhhHhh
Q psy6893 649 IHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--VINDYLLGQV---KDATN-EMVRHGGCLGLGLA 722 (988)
Q Consensus 649 Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--~~~~~Ll~~l---~~s~~-~~ir~gA~LGLGla 722 (988)
...|+.++|+..+..-+.--....++...+-+++.+|.++...+. .++.++..-+ ....+ ..-...+...||.+
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 346788888888877653111123455678888888888776654 3555444333 22222 34445567788888
Q ss_pred hcCCCCHH-HHHHHHHhhc---c-CChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHH----hccc-chhh-hHHHHHHH
Q psy6893 723 AMGSARDD-IYEQLKFNLY---Q-DDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAK----ETQH-EKIL-RGLAVGIS 791 (988)
Q Consensus 723 ~~Gs~~~d-v~~~L~~~l~---~-D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~----etq~-e~i~-R~lalgLg 791 (988)
|...++.+ +.+.+...+. . ++......+-..+|.++...++.+-.....+-+. ...+ .... -...+|..
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 87777644 3333333331 1 1111111345567777777777665444333222 2222 2222 23444555
Q ss_pred HHhcCCchhHHHHHHHHhcc----cchhhhhhcHHHHHHHHcCCCCh
Q psy6893 792 FIMYGQLENADDLVRDLCEE----KDAILRRSGMYTIAMAYCGSGSN 834 (988)
Q Consensus 792 Li~~Gr~e~a~~li~~L~~~----~dp~~r~~~~~~lslAyaGtGnv 834 (988)
....|+.+.|...++..... .+|..... ...++..|...|+.
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTSSCCH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhCCCcH
Confidence 56667877776666654432 24433222 45577777777774
No 119
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=60.30 E-value=33 Score=37.69 Aligned_cols=86 Identities=17% Similarity=0.112 Sum_probs=60.4
Q ss_pred CCccchhHHHHHhhhccCCCCchhHHHHHHhhhhcCCCchhHHHHHHHHHHHhhccCCC-------hhHHHHHHHhhhhc
Q psy6893 311 SGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEDDAVTGEAAGIAMGLVLLGSKS-------ESAIQDMVAYAKET 383 (988)
Q Consensus 311 ~~y~~~GaL~alGli~~g~~~~~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~~~Gs~~-------~~~~~~L~~~~~dt 383 (988)
+...+-.|.-+++.+....+......++..+...+.+.+...+.+|..++|-+.-|... .+++..|++.+.|.
T Consensus 341 ~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~ 420 (462)
T 1ibr_B 341 DWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420 (462)
T ss_dssp CCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 34567788888888776666556677788888777778899999999999988877542 34667777777765
Q ss_pred chHHHHHHHHHHHH
Q psy6893 384 QHEKILRGLAVGIS 397 (988)
Q Consensus 384 ~~E~~~r~lalgl~ 397 (988)
. ..++.+.+..++
T Consensus 421 ~-~~Vr~~a~~~l~ 433 (462)
T 1ibr_B 421 S-VVVRDTAAWTVG 433 (462)
T ss_dssp C-HHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHH
Confidence 5 334443333333
No 120
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=60.29 E-value=70 Score=29.14 Aligned_cols=51 Identities=10% Similarity=0.057 Sum_probs=29.8
Q ss_pred cccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCC--chHHHHHHHHHh
Q psy6893 647 GVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANH--GAVINDYLLGQV 703 (988)
Q Consensus 647 G~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~--~~~~~~~Ll~~l 703 (988)
-....|+.++++..+...+... .. ..-+++.+|.+.... ..+++.++...+
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 69 (186)
T 3as5_A 17 SHAKAGRYSQAVMLLEQVYDAD----AF--DVDVALHLGIAYVKTGAVDRGTELLERSL 69 (186)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTT----SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC----cc--ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445689999999998887521 11 245566666654433 334555554433
No 121
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=59.19 E-value=1.1e+02 Score=29.63 Aligned_cols=204 Identities=7% Similarity=-0.121 Sum_probs=107.8
Q ss_pred hhHHHHHhhhccCCc--hHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHH-HHHHHHHhhccCChh----hH-HH
Q psy6893 678 GGGLYALGLIHANHG--AVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDD-IYEQLKFNLYQDDAV----TG-EA 749 (988)
Q Consensus 678 ~GAL~AlGlI~ag~~--~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~d-v~~~L~~~l~~D~~~----~~-e~ 749 (988)
+-+++.+|.++...+ .+++.++...+....+ ..+...+|.++...++.+ +...+...+..++.. .. ..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhcc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 445566666655444 4566666554433321 235567777776666643 444444444221111 11 13
Q ss_pred HHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHc
Q psy6893 750 AGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYC 829 (988)
Q Consensus 750 AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAya 829 (988)
+-+.+|.++.-.++.+-....++-....... +-.+...|+.+.+...++.+....... ....+.++..|.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~ 150 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEK--AEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcch--HHHHHHHHHHHH
Confidence 4445666666666655443333322221111 112344466666666666655443222 233566788888
Q ss_pred CCCChhHHHHHHHHHHH---------hhhhhhhhhhhccCCCchHHHHHhhhhhccCCC-hhhhhhHHhhhhhhhhhhhh
Q psy6893 830 GSGSNVATKRLLHDAIL---------RRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVN-DDVRREAVTALGFILFRKKR 899 (988)
Q Consensus 830 GtGnvl~iq~lL~~~~~---------~~lG~alia~g~~~tgn~~air~ll~~~~sd~~-~~vrraa~~alg~i~~~npe 899 (988)
..|+.......+..+.. ..+|.++..+|+- +.|++.+...+..+|+ ..+. .-++..+.-..+.+
T Consensus 151 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~al~~~~~~~~~~--~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF----PEAIADCNKAIEKDPNFVRAY--IRKATAQIAVKEYA 224 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHTTCHH
T ss_pred HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHhCHHHHHHH--HHHHHHHHHHhhHH
Confidence 88998888887777664 4577777777765 6677777666655553 2222 22333344445554
Q ss_pred hh
Q psy6893 900 TR 901 (988)
Q Consensus 900 q~ 901 (988)
..
T Consensus 225 ~A 226 (258)
T 3uq3_A 225 SA 226 (258)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 122
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=55.04 E-value=1.1e+02 Score=31.64 Aligned_cols=144 Identities=15% Similarity=0.067 Sum_probs=70.5
Q ss_pred hHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhh--ccCCchHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHH-
Q psy6893 654 ETEALAHMQSYLPRETGPTSGYYEGGGLYALGLI--HANHGAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDD- 730 (988)
Q Consensus 654 ~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI--~ag~~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~d- 730 (988)
.+.-...+..++|. ...+++.+|.. ..|...+++..+...+...++. ..+.++||.+++..++.+
T Consensus 102 ~~~l~~~l~~~lp~---------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la~~~~~~g~~~~ 169 (287)
T 3qou_A 102 EEAIRALLDXVLPR---------EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN---GEIGLLLAETLIALNRSED 169 (287)
T ss_dssp HHHHHHHHHHHSCC---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCC---------chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc---hhHHHHHHHHHHHCCCHHH
Confidence 33445566666651 12344444443 3444455666665555433332 246778888888777744
Q ss_pred HHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHHhc
Q psy6893 731 IYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCE 810 (988)
Q Consensus 731 v~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~~ 810 (988)
+...+..++..+..........++.+.-.|. ..+++..+-+.+. ...+...-.+.+|..+...|+.+++...++.+..
T Consensus 170 A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~-~~~a~~~l~~al~-~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 170 AEAVLXTIPLQDQDTRYQGLVAQIELLXQAA-DTPEIQQLQQQVA-ENPEDAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp HHHHHTTSCGGGCSHHHHHHHHHHHHHHHHT-SCHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCchhhcchHHHHHHHHHHHHhhcc-cCccHHHHHHHHh-cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4455544443333211111111111222222 2234444444332 2223333455666667778888777776666554
Q ss_pred c
Q psy6893 811 E 811 (988)
Q Consensus 811 ~ 811 (988)
.
T Consensus 248 ~ 248 (287)
T 3qou_A 248 X 248 (287)
T ss_dssp H
T ss_pred c
Confidence 3
No 123
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=54.84 E-value=1.9e+02 Score=29.49 Aligned_cols=157 Identities=8% Similarity=0.044 Sum_probs=70.5
Q ss_pred ccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCc--hHHHHHHHHHhhhcCchhh---------HHHHH
Q psy6893 648 VIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHG--AVINDYLLGQVKDATNEMV---------RHGGC 716 (988)
Q Consensus 648 ~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~--~~~~~~Ll~~l~~s~~~~i---------r~gA~ 716 (988)
....|+.++++..+...+... .. ...+++.+|.++...+ .+++..+...+...++... ...+.
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~----~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLK----SD--NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC----SC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHH
Confidence 345678888888888777421 11 2245555565544333 3455555444433322111 11123
Q ss_pred HhhHhhhcCCCCH-HHHHHHHHhhccCChhh--HHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHH
Q psy6893 717 LGLGLAAMGSARD-DIYEQLKFNLYQDDAVT--GEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFI 793 (988)
Q Consensus 717 LGLGla~~Gs~~~-dv~~~L~~~l~~D~~~~--~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi 793 (988)
+.+|.++...++. ++...+...+..++... ...+-..+|.++...++.+-...+.+-..+...+...-...+|..+.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3445555544443 33444443332222111 11223344555555555444333333332222222223344444455
Q ss_pred hcCCchhHHHHHHHHhc
Q psy6893 794 MYGQLENADDLVRDLCE 810 (988)
Q Consensus 794 ~~Gr~e~a~~li~~L~~ 810 (988)
..|+.+.+...++....
T Consensus 318 ~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 56666666666655443
No 124
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=52.55 E-value=2.1e+02 Score=29.49 Aligned_cols=181 Identities=10% Similarity=0.135 Sum_probs=99.6
Q ss_pred chhhHHHHHhhhccCCch---HHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHHHHHHHHHhhccCChh----hHH
Q psy6893 676 YEGGGLYALGLIHANHGA---VINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDDIYEQLKFNLYQDDAV----TGE 748 (988)
Q Consensus 676 ~k~GAL~AlGlI~ag~~~---~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~dv~~~L~~~l~~D~~~----~~e 748 (988)
++..|+--+-.|.--..+ ....-|+..++.+..-...-...=.+|. +.--|++....+.|+++.|=.. ..-
T Consensus 48 V~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~--la~i~Pe~v~~vVp~lfanyrigd~kikI 125 (253)
T 2db0_A 48 VVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQ--MAKEKPELVKSMIPVLFANYRIGDEKTKI 125 (253)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH--HHHHCHHHHHHHHHHHHHHSCCCSHHHHH
T ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhH--HHHhCHHHHHhhHHHHHHHHhcCCcccee
Confidence 566676666655333332 1344455455555432222233334444 3456999999999999743221 122
Q ss_pred HHHHHhhcccCCCCCHHHHHH----HHHHHHhcccchhhhHHHHHH-HHHhcCCchhHHHHHHH---Hhcccchhhhhhc
Q psy6893 749 AAGIAMGLVLLGSKSESAIQD----MVAYAKETQHEKILRGLAVGI-SFIMYGQLENADDLVRD---LCEEKDAILRRSG 820 (988)
Q Consensus 749 ~AalAlGLI~vGs~n~d~i~~----ll~~~~etq~e~i~R~lalgL-gLi~~Gr~e~a~~li~~---L~~~~dp~~r~~~ 820 (988)
--+|+++-|+.. |++.... +..++ ++.+.+-|..++.. +-++-....-+.+.+.. |..+.|.+.|...
T Consensus 126 n~~yaLeeIara--nP~l~~~v~rdi~sml--tskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSa 201 (253)
T 2db0_A 126 NVSYALEEIAKA--NPMLMASIVRDFMSML--SSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASA 201 (253)
T ss_dssp HHHHHHHHHHHH--CHHHHHHHHHHHHHHT--SCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHH
T ss_pred cHHHHHHHHHHh--ChHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHH
Confidence 467888888766 7765544 44433 34455667777664 22333333333333333 3345667767663
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHhhhhhhhhhhhccCCCchHHHHHhhhhh---ccCCChhhhhhHHhhhhhhhh
Q psy6893 821 MYTIAMAYCGSGSNVATKRLLHDAILRRSGMYTIAMAYCGSGSNVATKRLLHVA---VSDVNDDVRREAVTALGFILF 895 (988)
Q Consensus 821 ~~~lslAyaGtGnvl~iq~lL~~~~~~~lG~alia~g~~~tgn~~air~ll~~~---~sd~~~~vrraa~~alg~i~~ 895 (988)
+..+.... +-|++ +|+...-- ..|+++.|...|.++++.+..
T Consensus 202 --VEtL~~lA------------------------------~~npk-lRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 202 --VEALVHLA------------------------------TLNDK-LRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp --HHHHHHHH------------------------------TSCHH-HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHH------------------------------HcCHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 33333222 44554 44433221 478899999999999988765
No 125
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=52.49 E-value=50 Score=39.31 Aligned_cols=173 Identities=12% Similarity=0.030 Sum_probs=95.0
Q ss_pred hhcCCCchhhhcchhHHHHhhcccchhhhhhhhcccccCChHHHHHHH---hhcCCCCCCCCCccchhhHHHHHhhhccC
Q psy6893 614 MHSGTTSDQFLRDNLEWLARATNWAKLTATASLGVIHRGHETEALAHM---QSYLPRETGPTSGYYEGGGLYALGLIHAN 690 (988)
Q Consensus 614 ~naGt~~D~flr~~~~wl~k~~~w~kfsA~ASLG~Ih~gn~~~~l~~L---~~yL~~~~~s~~~~~k~GAL~AlGlI~ag 690 (988)
+..|..-+.++-+-..-+...+---|-.+--.+..+...+++..+-.+ .+=+. +.+++++|-||-++|-|.
T Consensus 66 ~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~----~~n~~ir~lALr~L~~i~-- 139 (621)
T 2vgl_A 66 FLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLA----SRNPTFMGLALHCIANVG-- 139 (621)
T ss_dssp HHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHH----SCCHHHHHHHHHHHHHHC--
T ss_pred HHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcC----CCCHHHHHHHHHHhhccC--
Confidence 445665444433333333332323455556666677777777654443 33442 668999999999999993
Q ss_pred Cch--H-HHHHHHHHhh-hcCchhhHHHHHHhhHhhhcCCCCH------HHHHHHHHhhccCChhhHHHHH-HHhhcccC
Q psy6893 691 HGA--V-INDYLLGQVK-DATNEMVRHGGCLGLGLAAMGSARD------DIYEQLKFNLYQDDAVTGEAAG-IAMGLVLL 759 (988)
Q Consensus 691 ~~~--~-~~~~Ll~~l~-~s~~~~ir~gA~LGLGla~~Gs~~~------dv~~~L~~~l~~D~~~~~e~Aa-lAlGLI~v 759 (988)
... + +...+...+. .+.++.||--|++++.-.|- .++ +.++.|..+| .|+......+| .++.-|
T Consensus 140 ~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~--~~p~~~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i-- 214 (621)
T 2vgl_A 140 SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR--TSPDLVPMGDWTSRVVHLL-NDQHLGVVTAATSLITTL-- 214 (621)
T ss_dssp CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH--HCGGGCCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH--hChhhcCchhHHHHHHHHh-CCCCccHHHHHHHHHHHH--
Confidence 322 1 2333433332 45678999999999987764 223 4566777766 45443333333 334443
Q ss_pred CCCCHHH----HHHHHHHH----Hhcc-----------cchhhhHHHHHHHHHhcCCc
Q psy6893 760 GSKSESA----IQDMVAYA----KETQ-----------HEKILRGLAVGISFIMYGQL 798 (988)
Q Consensus 760 Gs~n~d~----i~~ll~~~----~etq-----------~e~i~R~lalgLgLi~~Gr~ 798 (988)
...+.+. +..+++++ ...+ .++|.+...+.+ +..|++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~l-l~~~~~~ 271 (621)
T 2vgl_A 215 AQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRL-LQCYPPP 271 (621)
T ss_dssp HHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHH-GGGSSSC
T ss_pred HHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHH-HHHhCCC
Confidence 3334442 22223222 2111 157777777776 6667764
No 126
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=51.57 E-value=84 Score=26.62 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=6.6
Q ss_pred HhcCCchhHHHHHHH
Q psy6893 793 IMYGQLENADDLVRD 807 (988)
Q Consensus 793 i~~Gr~e~a~~li~~ 807 (988)
...|+.+.+...++.
T Consensus 80 ~~~~~~~~A~~~~~~ 94 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQK 94 (136)
T ss_dssp HTTTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHH
Confidence 334444444444443
No 127
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=50.12 E-value=1.3e+02 Score=33.52 Aligned_cols=61 Identities=15% Similarity=0.101 Sum_probs=34.3
Q ss_pred CCCccchhhHHHHHhhhccCCchH-HHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHHHHHH
Q psy6893 671 PTSGYYEGGGLYALGLIHANHGAV-INDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDDIYEQ 734 (988)
Q Consensus 671 s~~~~~k~GAL~AlGlI~ag~~~~-~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~dv~~~ 734 (988)
+.++|+||-||-++|-|....--+ +..++.+-+ .+.++.||--|+++..-.+ ..++|+.+.
T Consensus 115 ~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L-~d~~pyVRk~A~l~~~kL~--~~~pe~v~~ 176 (355)
T 3tjz_B 115 GKEDSYRGPAVRALCQITDSTMLQAIERYMKQAI-VDKVPSVSSSALVSSLHLL--KCSFDVVKR 176 (355)
T ss_dssp SSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHT--TTCHHHHHT
T ss_pred CCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHh--ccCHHHHHH
Confidence 456777777777777774433222 333333333 4456677777777765433 445665543
No 128
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=49.43 E-value=2.7e+02 Score=29.64 Aligned_cols=211 Identities=8% Similarity=-0.079 Sum_probs=112.7
Q ss_pred cCChHHHHHHHhcccCCCCCCCCCccchhHHHHHhhhccCCCC--chhHHHHHHhhhhcCCCc-hhHHHHHHHHHHHhhc
Q psy6893 289 RGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--VINDYLLGQVKDATNEDD-AVTGEAAGIAMGLVLL 365 (988)
Q Consensus 289 ~~~~~~gl~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~~--~~~d~l~~lL~~~~~~d~-~~~~~aA~lglGL~~~ 365 (988)
.++.++++..+.+-+.--....++...+-+++.+|.++...+. ....++...+.-.....+ ......+-..||.+|.
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 4566777776665543211113445677888888888776653 122333332322222222 2233445568899999
Q ss_pred cCCChhHH-HH---HHHhhhhcch--HHHHHHHHHHHHHHhcCChhhHHHHHHHHhhcchhhhhccchhHHHHHhhhhhh
Q psy6893 366 GSKSESAI-QD---MVAYAKETQH--EKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCVSYL 439 (988)
Q Consensus 366 Gs~~~~~~-~~---L~~~~~dt~~--E~~~r~lalgl~~v~~g~~e~a~~li~~L~~~~d~~lr~~~~~~~~l~l~Lgll 439 (988)
..++-+-. +. .+.+...... .....-..+|.+....|+.+.|...++..++-....-. +........||.+
T Consensus 194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~la~~ 270 (378)
T 3q15_A 194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP---DLLPKVLFGLSWT 270 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC---hhHHHHHHHHHHH
Confidence 88886533 22 2333333322 23445567888888899998888877776652111111 1112223445666
Q ss_pred hcccc----chhhHH-h------hccchh---HHHHHhhhccCCCHHHHHHHHHHhccCCCchhhHHHHHHHHHHhh
Q psy6893 440 YFDLF----SDLTYR-I------VKNRSG---MYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILF 502 (988)
Q Consensus 440 ~~g~~----~e~~l~-~------~~~~~~---~~~~~~AYaGTGN~~~Iq~LLhi~~s~~~~dvrr~AV~~lg~I~~ 502 (988)
+...+ +...++ + ...|.. ....+..|...|+...+++-+..+-.....+....+...||.+..
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 65554 222221 1 122322 126677788888877778777777654433333344456666654
No 129
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=48.96 E-value=70 Score=38.21 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhcCchhhHHHHHHhhHhhh--c-------CCCCHHHHHHHHHhhc--------cCChh--hHHHHHHHhh
Q psy6893 695 INDYLLGQVKDATNEMVRHGGCLGLGLAA--M-------GSARDDIYEQLKFNLY--------QDDAV--TGEAAGIAMG 755 (988)
Q Consensus 695 ~~~~Ll~~l~~s~~~~ir~gA~LGLGla~--~-------Gs~~~dv~~~L~~~l~--------~D~~~--~~e~AalAlG 755 (988)
....|+..|-+ +.=.+||||++||--+. - ...|.|+...|+-++. +|..+ .+|.+|-++|
T Consensus 175 fcE~L~~DLFd-p~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLS-YEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTC-SSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-cchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 34455555533 34579999999986531 1 2344566665555553 23322 3677777777
Q ss_pred cc
Q psy6893 756 LV 757 (988)
Q Consensus 756 LI 757 (988)
.+
T Consensus 254 aL 255 (800)
T 3oc3_A 254 RI 255 (800)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 130
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=48.20 E-value=1.3e+02 Score=30.15 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=13.9
Q ss_pred HHHHHHHh----cCChhhHHHHHHHHhhc
Q psy6893 393 AVGISFIM----YGQLENADDLVRDLCEE 417 (988)
Q Consensus 393 algl~~v~----~g~~e~a~~li~~L~~~ 417 (988)
.+|..+.. .++.+.+-..++..++.
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 44455544 56666666666655443
No 131
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=48.02 E-value=2.2e+02 Score=28.35 Aligned_cols=174 Identities=13% Similarity=-0.013 Sum_probs=93.5
Q ss_pred CccchhhHHHHHhhhccCCch--HHHHHHHHHhhh---c--CchhhHHHHHHhhHhhhcCCCCHH-HHHHHHHhhcc---
Q psy6893 673 SGYYEGGGLYALGLIHANHGA--VINDYLLGQVKD---A--TNEMVRHGGCLGLGLAAMGSARDD-IYEQLKFNLYQ--- 741 (988)
Q Consensus 673 ~~~~k~GAL~AlGlI~ag~~~--~~~~~Ll~~l~~---s--~~~~ir~gA~LGLGla~~Gs~~~d-v~~~L~~~l~~--- 741 (988)
+.-...-+++.+|.+....+. +++.++...+.- . .+.....-+...+|.+|.-.++.+ ....+...+..
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 344556677777777665543 455544433321 1 123445556777888877776644 33333333321
Q ss_pred ---CChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhc------ccchhh--hHHHHHHHHHhcCCchhHHHHHHHHhc
Q psy6893 742 ---DDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKET------QHEKIL--RGLAVGISFIMYGQLENADDLVRDLCE 810 (988)
Q Consensus 742 ---D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~et------q~e~i~--R~lalgLgLi~~Gr~e~a~~li~~L~~ 810 (988)
.+......+-..+|.++.-.++.+-...+++-..+. .+.... -...+|..+...|+.+.+...++....
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111112234456677777777766544443332221 111222 234455555667888887777776655
Q ss_pred c------cchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHH
Q psy6893 811 E------KDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAIL 846 (988)
Q Consensus 811 ~------~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~ 846 (988)
. ++........+.++..|...|+.....+.+..+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 22222334456677788888888777777766653
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=47.97 E-value=62 Score=34.89 Aligned_cols=122 Identities=14% Similarity=0.072 Sum_probs=82.6
Q ss_pred ceecCChHHHHHHHhcccCCCCCCCCCccchhHHHHHhhhccCCCCchhHHHHHHhhhhcCCCchhHHHHHHHHHHHhhc
Q psy6893 286 VIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNEDDAVTGEAAGIAMGLVLL 365 (988)
Q Consensus 286 ~Ih~~~~~~gl~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~~~~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~~~ 365 (988)
++-.++.+++..+++.-+... ..+. +.|.+|+++..-+ .-+.++..|.....-.++.....+-+-+|.++.
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~----p~~~---~~~~~a~l~~~~~--r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAG----SEHL---VAWMKAVVYGAAE--RWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTT----CHHH---HHHHHHHHHHHTT--CHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcC----CchH---HHHHHHHHHHHcC--CHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH
Confidence 555779999999999887642 2233 7788888765544 334455556555433334445567888899999
Q ss_pred cCCChhHH-HHHHHhhhhcch--H-HHHHHHHHHHHHHhcCChhhHHHHHHHHhhc
Q psy6893 366 GSKSESAI-QDMVAYAKETQH--E-KILRGLAVGISFIMYGQLENADDLVRDLCEE 417 (988)
Q Consensus 366 Gs~~~~~~-~~L~~~~~dt~~--E-~~~r~lalgl~~v~~g~~e~a~~li~~L~~~ 417 (988)
.-++.+-. ..+-... .... . ..-..+..|+++...|+.+.+..+++.+...
T Consensus 183 ~LG~~~eAl~~l~~a~-~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 183 NLALFTEAERRLTEAN-DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HTTCHHHHHHHHHHHH-TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHh-cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 88886643 4443332 2222 1 2335678999999999999999999999875
No 133
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=47.17 E-value=60 Score=38.77 Aligned_cols=37 Identities=11% Similarity=0.050 Sum_probs=25.4
Q ss_pred hccCCCchhhHHHHHHHHHHhhcCccccccccCCCCchhHHhhccchh
Q psy6893 481 AVSDVNDDVRREAVTALGFILFRTLFYVAPACTRSPWPGVISLLDDPM 528 (988)
Q Consensus 481 ~~s~~~~dvrr~AV~~lg~I~~~~~~~~g~~~~~~~~p~ai~lL~~~~ 528 (988)
+-.|.+||||..|+-.|-=|+ .| ..++..+..|++.+
T Consensus 307 GL~D~DDDVRAVAAetLiPIA--~p---------~~l~~LL~iLWd~L 343 (800)
T 3oc3_A 307 LLSSPDEDIKLLSAELLCHFP--IT---------DSLDLVLEKCWKNI 343 (800)
T ss_dssp HTTCSSHHHHHHHHHHHTTSC--CS---------STHHHHHHHHHHHH
T ss_pred hcCCcccHHHHHHHHHhhhhc--ch---------hhHHHHHHHHHHHh
Confidence 446789999999887775555 22 45777777776544
No 134
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=47.04 E-value=62 Score=38.66 Aligned_cols=155 Identities=8% Similarity=-0.116 Sum_probs=78.7
Q ss_pred cccCChHHHHHHHhhcCCC----CCCCCCccchhhHHHHHhhh--ccCCchHHHHHHHHHhhhcCchhhHHHHHHhhHhh
Q psy6893 649 IHRGHETEALAHMQSYLPR----ETGPTSGYYEGGGLYALGLI--HANHGAVINDYLLGQVKDATNEMVRHGGCLGLGLA 722 (988)
Q Consensus 649 Ih~gn~~~~l~~L~~yL~~----~~~s~~~~~k~GAL~AlGlI--~ag~~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla 722 (988)
...|+.++++..++..+.. .......+. .+++.+|.+ ..|...+++..+...+...++. ..+...+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~--~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESV--ELPLMEVRALLDLGDVAKATRKLDDLAERVGWR---WRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCS--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC---HHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccch--hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch---HHHHHHHHHH
Confidence 6778999999999988810 000111122 244444433 3345556666665555433322 2355677777
Q ss_pred hcCCCC-HHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhH
Q psy6893 723 AMGSAR-DDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENA 801 (988)
Q Consensus 723 ~~Gs~~-~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a 801 (988)
+...++ ++++..+...+..+..... +-+.+|.+....++.+-+..+-+.+ +...+...-...+|..+...|+.++|
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P~~~~--~~~~lg~~~~~~g~~~~~~~~~~al-~~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFPGELA--PKLALAATAELAGNTDEHKFYQTVW-STNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCSH--HHHHHHHHHHHHTCCCTTCHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHcCChHHHHHHHHHH-HhCCchHHHHHHHHHHHHHcCCHHHH
Confidence 776666 4456666666644433221 2223333333333322233333322 22222233345566667778888887
Q ss_pred HHHHHHHhcc
Q psy6893 802 DDLVRDLCEE 811 (988)
Q Consensus 802 ~~li~~L~~~ 811 (988)
...++.....
T Consensus 554 ~~~~~~al~l 563 (681)
T 2pzi_A 554 VRTLDEVPPT 563 (681)
T ss_dssp HHHHHTSCTT
T ss_pred HHHHHhhccc
Confidence 7777765543
No 135
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=46.15 E-value=1.5e+02 Score=35.82 Aligned_cols=173 Identities=19% Similarity=0.157 Sum_probs=93.9
Q ss_pred hHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCHHH----HHHHHHhhccCChhhHHHHHHH---hhcccCCCCCHH
Q psy6893 693 AVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDDI----YEQLKFNLYQDDAVTGEAAGIA---MGLVLLGSKSES 765 (988)
Q Consensus 693 ~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~dv----~~~L~~~l~~D~~~~~e~AalA---lGLI~vGs~n~d 765 (988)
.+.+..|.+.+.++.--.-|..|++||=-- .-..+++| +..|+.+|..|.. ..+....+ +-.++.+..+.+
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~-sk~y~~~Vg~~~l~~li~~L~~d~~-D~e~v~~~LetL~~l~~~~~~~~ 97 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSL-SKKYRLEVGIQAMEHLIHVLQTDRS-DSEIIGYALDTLYNIISNDEEEE 97 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHT-TTTTTTHHHHHTHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHCCC----
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHH-HHHhHHHhhhhhHHHHHHHHhcccc-cHHHHHHHHHHHHHHhCCCCccc
Confidence 457889999998887778999999998432 22334444 3455555544432 22321111 212233222111
Q ss_pred HHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHH
Q psy6893 766 AIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAI 845 (988)
Q Consensus 766 ~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~ 845 (988)
- .. . ...-..-+++-++-+|..+++.+..+++.|. .+|+..|+..+=.+.. +=++++...|+.+
T Consensus 98 ~-~~----~----~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~-~~df~vR~~alqlL~~--L~~~r~~~~Q~~I---- 161 (651)
T 3grl_A 98 V-EE----N----STRQSEDLGSQFTEIFIKQQENVTLLLSLLE-EFDFHVRWPGVKLLTS--LLKQLGPQVQQII---- 161 (651)
T ss_dssp -------------------CHHHHHHHHHHHSTHHHHHHHHHTT-CCCHHHHHHHHHHHHH--HHHHSHHHHHHHH----
T ss_pred c-cc----c----ccccchHHHHHHHHHHHcCCccHHHHHHHhc-CccHHHHHHHHHHHHH--HHhcCcHHHHHHH----
Confidence 1 00 0 0011122344455677789999999999886 4688888764322211 1111222222222
Q ss_pred HhhhhhhhhhhhccCCCchHHHHHhhhhhccCCChhhhhhHHhhhhhhhhhhhh
Q psy6893 846 LRRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRKKR 899 (988)
Q Consensus 846 ~~~lG~alia~g~~~tgn~~air~ll~~~~sd~~~~vrraa~~alg~i~~~npe 899 (988)
...++.|.+|+.++. |..+.+|-.+..-+.-+...|++
T Consensus 162 ---------------l~~p~gi~~Lv~lL~-d~rE~iRneallLL~~Lt~~n~~ 199 (651)
T 3grl_A 162 ---------------LVSPMGVSRLMDLLA-DSREVIRNDGVLLLQALTRSNGA 199 (651)
T ss_dssp ---------------HHSTTHHHHHHGGGG-CSSHHHHHHHHHHHHHHHTTCHH
T ss_pred ---------------HhCcccHHHHHHHHh-CchHHHHHHHHHHHHHHhcCCHH
Confidence 245678888888874 45788887777767666666665
No 136
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=45.16 E-value=1.4e+02 Score=36.15 Aligned_cols=129 Identities=11% Similarity=-0.014 Sum_probs=73.4
Q ss_pred hhhHHHHHhhhccCCch--HHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCC-HHHHHHHHHhhccCChhhHHHHHHH
Q psy6893 677 EGGGLYALGLIHANHGA--VINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSAR-DDIYEQLKFNLYQDDAVTGEAAGIA 753 (988)
Q Consensus 677 k~GAL~AlGlI~ag~~~--~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~-~dv~~~L~~~l~~D~~~~~e~AalA 753 (988)
-..|+..||.+....|. +++.++..-+.-.++. ..+-..||.++...++ +++++.+...+..+.... .+-+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~---~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~--~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF---AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA--DAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHH
Confidence 35678888888776554 5777776655444332 2456778888877776 445566655554343322 23445
Q ss_pred hhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHHhc
Q psy6893 754 MGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCE 810 (988)
Q Consensus 754 lGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~~ 810 (988)
+|.++.-.++.+-.....+-+.+-+.+...-...+|..+...|+.++|....+....
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666655443333333333323333345566666777887776666665443
No 137
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=44.52 E-value=1.1e+02 Score=31.83 Aligned_cols=124 Identities=11% Similarity=0.094 Sum_probs=66.5
Q ss_pred HHHHhhHhhhcCCCCHH-HHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHH
Q psy6893 714 GGCLGLGLAAMGSARDD-IYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISF 792 (988)
Q Consensus 714 gA~LGLGla~~Gs~~~d-v~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgL 792 (988)
.+.+.+|.++...++.+ +...+...+..++... .+-+.+|.+.+..|+.+-...+++-+.....+.....+..++.+
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG--EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch--hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 35566777776666644 4555655554444332 45566777777777777666555544333333344555556656
Q ss_pred HhcCCchhHH-HHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHH
Q psy6893 793 IMYGQLENAD-DLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLH 842 (988)
Q Consensus 793 i~~Gr~e~a~-~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~ 842 (988)
...++.+.+. .+-..+...++.. ...+.++..|...|+.......+.
T Consensus 196 ~~~~~~~~a~~~l~~al~~~P~~~---~~~~~la~~l~~~g~~~~A~~~l~ 243 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAENPEDA---ALATQLALQLHQVGRNEEALELLF 243 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhcccCccHHHHHHHHhcCCccH---HHHHHHHHHHHHcccHHHHHHHHH
Confidence 6666665443 3333344333221 234556666666566544333333
No 138
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=43.92 E-value=2.4e+02 Score=27.65 Aligned_cols=219 Identities=10% Similarity=-0.009 Sum_probs=105.8
Q ss_pred cccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCC--chHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCC
Q psy6893 649 IHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANH--GAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGS 726 (988)
Q Consensus 649 Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~--~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs 726 (988)
...|+.++|+..+...+..+ +.+ ..+++.+|.++... ..+++.++...+....+.....-+...+|.++...
T Consensus 14 ~~~~~~~~A~~~~~~~l~~~--p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEAKK--YNS----PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HTTTCHHHHHHHHHHHHHTT--CCC----STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHhC--CCc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 45677888888887776421 111 22455555554443 34567666655553334445455667777777777
Q ss_pred CCHH-HHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHH
Q psy6893 727 ARDD-IYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLV 805 (988)
Q Consensus 727 ~~~d-v~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li 805 (988)
++.+ .+..+...+..++... .+-..+|.++...++.+-.....+-..+.......-...+|..+...++.+.+...+
T Consensus 88 ~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTTRL--DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCT--HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcccH--HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7644 4445544443333222 233455666666666554444443332222222223333441133334556666655
Q ss_pred HHHhcccchhhhhhcHHHHHHHHcCCCC---hh----HHHHHHHHH-------------HHhhhhhhhhhhhccCCCchH
Q psy6893 806 RDLCEEKDAILRRSGMYTIAMAYCGSGS---NV----ATKRLLHDA-------------ILRRSGMYTIAMAYCGSGSNV 865 (988)
Q Consensus 806 ~~L~~~~dp~~r~~~~~~lslAyaGtGn---vl----~iq~lL~~~-------------~~~~lG~alia~g~~~tgn~~ 865 (988)
+.......... ...+.++..|...|+ .. ..++.+... ....+|.++...|+- +.
T Consensus 166 ~~a~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~ 239 (272)
T 3u4t_A 166 VKVLELKPNIY--IGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK----VK 239 (272)
T ss_dssp HHHHHHSTTCH--HHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH----HH
T ss_pred HHHHHhCccch--HHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH----HH
Confidence 55443322111 112223333333333 11 112222221 113466676666665 66
Q ss_pred HHHHhhhhhccCCChh
Q psy6893 866 ATKRLLHVAVSDVNDD 881 (988)
Q Consensus 866 air~ll~~~~sd~~~~ 881 (988)
|+..+-..+..+|++.
T Consensus 240 A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 240 ADAAWKNILALDPTNK 255 (272)
T ss_dssp HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhcCccHH
Confidence 7777766666666443
No 139
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=41.51 E-value=3.5e+02 Score=28.71 Aligned_cols=185 Identities=7% Similarity=-0.032 Sum_probs=97.0
Q ss_pred cccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCch--HHHHHHHHHhh---hcCc-hhhHHHHHHhhHhh
Q psy6893 649 IHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--VINDYLLGQVK---DATN-EMVRHGGCLGLGLA 722 (988)
Q Consensus 649 Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~~--~~~~~Ll~~l~---~s~~-~~ir~gA~LGLGla 722 (988)
...|+.++|+..+..-+.-.....++...+-+++.+|.++...+. .++.++..-+. ...+ ..-...+...||.+
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 356788888888876553111124456778888889988776654 35555544332 2222 23344566688888
Q ss_pred hcCCCCHH-HHHHHHHhhc---c-CChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHh----cccchhh-hHHHHHHHH
Q psy6893 723 AMGSARDD-IYEQLKFNLY---Q-DDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKE----TQHEKIL-RGLAVGISF 792 (988)
Q Consensus 723 ~~Gs~~~d-v~~~L~~~l~---~-D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~e----tq~e~i~-R~lalgLgL 792 (988)
|...++.+ +.+.+...+. . ++......+-..+|.++...++.+-.....+-..+ ..+.... -...+|...
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 88877744 3333333331 1 11111113445677777777776644433332221 1222221 233445445
Q ss_pred HhcCCchhHHHHHHHHhcc----cchhhhhhcHHHHHHHHcCCCCh
Q psy6893 793 IMYGQLENADDLVRDLCEE----KDAILRRSGMYTIAMAYCGSGSN 834 (988)
Q Consensus 793 i~~Gr~e~a~~li~~L~~~----~dp~~r~~~~~~lslAyaGtGnv 834 (988)
...|+.+.|...++..... ++|.... ....++..|...|+.
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~l~~ly~~~~~~ 316 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKE-LFLFLQAVYKETVDE 316 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHH-HHHHHHHHHSSSCCH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhCCCcH
Confidence 5668877777776655433 2332222 234455556666653
No 140
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=40.52 E-value=3.4e+02 Score=28.38 Aligned_cols=39 Identities=21% Similarity=0.062 Sum_probs=17.2
Q ss_pred ccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhcc
Q psy6893 650 HRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHA 689 (988)
Q Consensus 650 h~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~a 689 (988)
..|+.++++..+..-+... ..+++..++-++..+|.++.
T Consensus 26 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~ 64 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLH 64 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHH
Confidence 4556666666554433210 01222334445555555443
No 141
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=40.43 E-value=4.2e+02 Score=29.35 Aligned_cols=208 Identities=16% Similarity=0.112 Sum_probs=98.2
Q ss_pred hhHHHhhccchhhHHhhhcccee------cCChHHHHHHHhcccCCCCCCCCCccchhHHHHHhhhccC---CCCchhHH
Q psy6893 266 LEWLARATNWAKLTATASLGVIH------RGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHAN---HGAVINDY 336 (988)
Q Consensus 266 ~~Wl~k~~~~~~~sAtASLG~Ih------~~~~~~gl~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g---~~~~~~d~ 336 (988)
.+|+.+..+-+-..+.-.||.++ ..|.++++..+.+-+... ..-|.+.||.++.. +.. ..+.
T Consensus 27 ~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~Lg~~y~~g~g~~~-~~~~ 97 (490)
T 2xm6_A 27 LEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--------YTPAEYVLGLRYMNGEGVPQ-DYAQ 97 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCC-CHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcCCCCCC-CHHH
Confidence 34665555555555555566554 457777777776665421 13455556655442 222 3344
Q ss_pred HHHHhhhhcCCCchhHHHHHHHHHHHhhcc----CCChhHHHHHHHhhhhcchHHHHHHHHHHHHHHh----cCChhhHH
Q psy6893 337 LLGQVKDATNEDDAVTGEAAGIAMGLVLLG----SKSESAIQDMVAYAKETQHEKILRGLAVGISFIM----YGQLENAD 408 (988)
Q Consensus 337 l~~lL~~~~~~d~~~~~~aA~lglGL~~~G----s~~~~~~~~L~~~~~dt~~E~~~r~lalgl~~v~----~g~~e~a~ 408 (988)
++..+......+++ .|-+.||.+|.. ..+.+-....+.-+.+..+ ......+|..+.. .++.+.+-
T Consensus 98 A~~~~~~a~~~~~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 98 AVIWYKKAALKGLP----QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGR--DSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHHTTCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCCCH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 44444444333322 234556666653 3333322222222222222 2233345555543 45666666
Q ss_pred HHHHHHhhcchhhhhccchhHHHHHhhhhhhhcc----cc-chhhHHh------hccchhHHHHHhhhcc----CCCHHH
Q psy6893 409 DLVRDLCEEKDAILRRSGMYTIAMAYCVSYLYFD----LF-SDLTYRI------VKNRSGMYTIAMAYCG----SGSNVA 473 (988)
Q Consensus 409 ~li~~L~~~~d~~lr~~~~~~~~l~l~Lgll~~g----~~-~e~~l~~------~~~~~~~~~~~~AYaG----TGN~~~ 473 (988)
...+...+..++.- ...||.+|.. .+ .+..++. ..+|...+..+..|.- .+|...
T Consensus 172 ~~~~~a~~~~~~~a----------~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 172 EWYSKAAEQGNVWS----------CNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp HHHHHHHHTTCHHH----------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHCCCHHH----------HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 66666555433221 1234444432 22 2222211 2344555555555552 567666
Q ss_pred HHHHHHHhccCCCchhhHHHHHHHHHHhh
Q psy6893 474 TKRLLHVAVSDVNDDVRREAVTALGFILF 502 (988)
Q Consensus 474 Iq~LLhi~~s~~~~dvrr~AV~~lg~I~~ 502 (988)
..+++.-+.+..+. .|...||.+..
T Consensus 242 A~~~~~~a~~~~~~----~a~~~lg~~y~ 266 (490)
T 2xm6_A 242 SRVLFSQSAEQGNS----IAQFRLGYILE 266 (490)
T ss_dssp HHHHHHHHHTTTCH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCH----HHHHHHHHHHH
Confidence 66666666554322 34555665553
No 142
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=39.95 E-value=1.1e+02 Score=31.25 Aligned_cols=80 Identities=6% Similarity=-0.096 Sum_probs=51.5
Q ss_pred cCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHHhhhhhhhhhhhccCCCchHHHHHhhhhh
Q psy6893 795 YGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAILRRSGMYTIAMAYCGSGSNVATKRLLHVA 874 (988)
Q Consensus 795 ~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~~~lG~alia~g~~~tgn~~air~ll~~~ 874 (988)
....+.....+.....++++..|+.++... |.|.. .++...+-.++...
T Consensus 119 ~~~~~~~~~~i~~W~~s~~~w~rR~ai~~~-l~~~~------------------------------~~~~~~~~~i~~~~ 167 (220)
T 2b6c_A 119 ALHLTELPTIFALFYGAENFWNRRVALNLQ-LMLKE------------------------------KTNQDLLKKAIIYD 167 (220)
T ss_dssp HHSGGGHHHHHHHHTTCSSHHHHHHHHHTT-TTCGG------------------------------GCCHHHHHHHHHHT
T ss_pred HHChHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHH------------------------------CCCHHHHHHHHHHh
Confidence 345555666666777777777777654322 22211 23444444455545
Q ss_pred ccCCChhhhhhHHhhhhhhhhhhhhhhHhhh
Q psy6893 875 VSDVNDDVRREAVTALGFILFRKKRTRRKKK 905 (988)
Q Consensus 875 ~sd~~~~vrraa~~alg~i~~~npeq~pk~~ 905 (988)
..|++..|++++..+|.-++..+|+.+....
T Consensus 168 ~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 168 RTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 6778889999999999888888888776665
No 143
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=39.60 E-value=1.4e+02 Score=33.76 Aligned_cols=149 Identities=13% Similarity=0.020 Sum_probs=77.8
Q ss_pred cccCCh-HHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCc--hHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcC
Q psy6893 649 IHRGHE-TEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHG--AVINDYLLGQVKDATNEMVRHGGCLGLGLAAMG 725 (988)
Q Consensus 649 Ih~gn~-~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~--~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~G 725 (988)
...|+. ++|+..+..-+..+ + ....+++.+|.++...+ .+++.++..-+.-.++ ..+...||.++..
T Consensus 113 ~~~g~~~~~A~~~~~~al~~~--p----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~lg~~~~~ 182 (474)
T 4abn_A 113 NVTPDYSPEAEVLLSKAVKLE--P----ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN----KVSLQNLSMVLRQ 182 (474)
T ss_dssp TSSSSCCHHHHHHHHHHHHHC--T----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC----HHHHHHHHHHHTT
T ss_pred HhccccHHHHHHHHHHHHhhC--C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----HHHHHHHHHHHHH
Confidence 345788 88888888776411 1 12456777777665544 3566666655544443 3677788888776
Q ss_pred C---------CC-HHHHHHHHHhhccCChhhHHHHHHHhhcccCCC--------CCHH-HHHHHHHHHHhccc---chhh
Q psy6893 726 S---------AR-DDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGS--------KSES-AIQDMVAYAKETQH---EKIL 783 (988)
Q Consensus 726 s---------~~-~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs--------~n~d-~i~~ll~~~~etq~---e~i~ 783 (988)
. ++ +++...+...+..++... .+-+.+|.++... ++.+ ++..+-+.+ .... ....
T Consensus 183 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~ 259 (474)
T 4abn_A 183 LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG--RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAE-KVDRKASSNPD 259 (474)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-HHCGGGGGCHH
T ss_pred hccCChhhhhhhHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH-HhCCCcccCHH
Confidence 5 43 334455555443333222 1222233333221 2222 222222222 2122 3333
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHhc
Q psy6893 784 RGLAVGISFIMYGQLENADDLVRDLCE 810 (988)
Q Consensus 784 R~lalgLgLi~~Gr~e~a~~li~~L~~ 810 (988)
-...+|..+...|+.++|...++....
T Consensus 260 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 260 LHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666777888777776665543
No 144
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=38.48 E-value=1.1e+02 Score=34.06 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=38.0
Q ss_pred hhhhhhhhhhhccCCCchHH--HHHhhhhhccCCChhhhhhHHhhhhhhhhhhhhhhHhh
Q psy6893 847 RRSGMYTIAMAYCGSGSNVA--TKRLLHVAVSDVNDDVRREAVTALGFILFRKKRTRRKK 904 (988)
Q Consensus 847 ~~lG~alia~g~~~tgn~~a--ir~ll~~~~sd~~~~vrraa~~alg~i~~~npeq~pk~ 904 (988)
.+.|.|+=.|+.. .-.+++ +...+.-+..|.++.||++|+++..-+...+|+.+.+.
T Consensus 119 ~iR~lALRtL~~I-~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~ 177 (355)
T 3tjz_B 119 SYRGPAVRALCQI-TDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRW 177 (355)
T ss_dssp HHHHHHHHHHHHH-CCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTT
T ss_pred hHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 4566666666665 222222 33333444667899999999999999999899877543
No 145
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=38.04 E-value=1.3e+02 Score=29.63 Aligned_cols=73 Identities=11% Similarity=0.024 Sum_probs=39.6
Q ss_pred ccccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCc--hHHHHHHHHHhhhcCchhhHHHHHHhhHhhh
Q psy6893 648 VIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHG--AVINDYLLGQVKDATNEMVRHGGCLGLGLAA 723 (988)
Q Consensus 648 ~Ih~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~--~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~ 723 (988)
....|+.++|+..++..+.. .+.++ ....+++.+|.+....+ .+++..+...+...++.....-|..-+|.++
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~--~p~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNR--YPFGP-YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHH
Confidence 34458888999998887731 11111 22356666776665444 4566666555544443322223444555554
No 146
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=35.31 E-value=2.1e+02 Score=24.57 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=25.6
Q ss_pred HhhcccCCCCCHHHHHHHHH-HHHhcccchhh--hHHHHHHHHHhcCCchhHHHHHHHHh
Q psy6893 753 AMGLVLLGSKSESAIQDMVA-YAKETQHEKIL--RGLAVGISFIMYGQLENADDLVRDLC 809 (988)
Q Consensus 753 AlGLI~vGs~n~d~i~~ll~-~~~etq~e~i~--R~lalgLgLi~~Gr~e~a~~li~~L~ 809 (988)
.+|....-.++.+-...+++ .+....+.... -...+|..+...|+.+.+...++.+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~ 66 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLV 66 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444444555444333333 33222222221 22334444555667666666665544
No 147
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=35.30 E-value=2.8e+02 Score=26.75 Aligned_cols=114 Identities=12% Similarity=0.057 Sum_probs=51.2
Q ss_pred ccCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCc--hHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCC
Q psy6893 650 HRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHG--AVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSA 727 (988)
Q Consensus 650 h~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~--~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~ 727 (988)
..|+.++|+..+...+... +.....+.+.+|.++...+ .+++.++...+...++ ...+...+|.++...+
T Consensus 19 ~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~ 90 (228)
T 4i17_A 19 NAKNYAVAFEKYSEYLKLT-----NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN---LANAYIGKSAAYRDMK 90 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHT-----TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS---HHHHHHHHHHHHHHTT
T ss_pred HccCHHHHHHHHHHHHhcc-----CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc---hHHHHHHHHHHHHHcc
Confidence 4466677777776665311 0011134444555444333 3455555444433322 2334555666666665
Q ss_pred CHH-HHHHHHHhhccCChhhHH-----HHHHHhhcccCCCCCHHHHHHHH
Q psy6893 728 RDD-IYEQLKFNLYQDDAVTGE-----AAGIAMGLVLLGSKSESAIQDMV 771 (988)
Q Consensus 728 ~~d-v~~~L~~~l~~D~~~~~e-----~AalAlGLI~vGs~n~d~i~~ll 771 (988)
+.+ ....+...+..++....- .+-+.+|.+....++.+-.....
T Consensus 91 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 140 (228)
T 4i17_A 91 NNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENY 140 (228)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHH
Confidence 533 444444444322221100 12344555555555544433333
No 148
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=32.96 E-value=3.3e+02 Score=30.92 Aligned_cols=148 Identities=9% Similarity=-0.042 Sum_probs=63.5
Q ss_pred CChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccC--CchHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCCH
Q psy6893 652 GHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHAN--HGAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARD 729 (988)
Q Consensus 652 gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag--~~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~~ 729 (988)
|+.++|+..+...+..+ + ....+++.+|.+... ...+++.++...+...++. ..+...+|.+|...++.
T Consensus 3 g~~~~A~~~~~~al~~~-----p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~ 73 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-----P-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH---PEAVARLGRVRWTQQRH 73 (568)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC---HHHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCH
Confidence 56667777776666311 1 123455666655443 3345666665555433322 33556677777666663
Q ss_pred -HHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhc---CCchhHHHHH
Q psy6893 730 -DIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMY---GQLENADDLV 805 (988)
Q Consensus 730 -dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~---Gr~e~a~~li 805 (988)
++...+...+..++... .+-+.+|.++...++.+-....++-+.+...+...-...++..+... |+.+++...+
T Consensus 74 ~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 74 AEAAVLLQQASDAAPEHP--GIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34555555543333221 23345555555555655444444333332222222233444445556 7777666666
Q ss_pred HHHhc
Q psy6893 806 RDLCE 810 (988)
Q Consensus 806 ~~L~~ 810 (988)
+....
T Consensus 152 ~~al~ 156 (568)
T 2vsy_A 152 RAAVA 156 (568)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55543
No 149
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=32.85 E-value=2.2e+02 Score=34.55 Aligned_cols=148 Identities=9% Similarity=-0.029 Sum_probs=81.1
Q ss_pred cCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccCCc--hHHHHHHHHHhhhcCchhhHHHHHHhhHhhhcCCCC
Q psy6893 651 RGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHG--AVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSAR 728 (988)
Q Consensus 651 ~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag~~--~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~Gs~~ 728 (988)
+|+.++|+..+++-+.-+ -. ...+++.+|.+....| .+++.++..-+.-.++. ..+...||.++...++
T Consensus 22 ~G~~~eAi~~~~kAl~l~----P~--~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~nLg~~l~~~g~ 92 (723)
T 4gyw_A 22 QGNIEEAVRLYRKALEVF----PE--FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF---ADAYSNMGNTLKEMQD 92 (723)
T ss_dssp TTCHHHHHHHHHHHHHHC----SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHhC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC
Confidence 478888888887766311 11 2446666666554443 45776665555433322 3356777878777766
Q ss_pred H-HHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHH
Q psy6893 729 D-DIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRD 807 (988)
Q Consensus 729 ~-dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~ 807 (988)
. ++++.+...+..+.... .+-..+|.++...|+.+-.....+-+.+-..+...-...+|..+...|+.+++....+.
T Consensus 93 ~~~A~~~~~kAl~l~P~~~--~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~k 170 (723)
T 4gyw_A 93 VQGALQCYTRAIQINPAFA--DAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKK 170 (723)
T ss_dssp HHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHH
Confidence 3 45555555554343322 23345566666666654433333333333323333345566667778888777666655
Q ss_pred Hh
Q psy6893 808 LC 809 (988)
Q Consensus 808 L~ 809 (988)
+.
T Consensus 171 al 172 (723)
T 4gyw_A 171 LV 172 (723)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=32.40 E-value=2e+02 Score=26.51 Aligned_cols=59 Identities=12% Similarity=-0.083 Sum_probs=28.4
Q ss_pred HHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHHh
Q psy6893 751 GIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLC 809 (988)
Q Consensus 751 alAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~ 809 (988)
-+.+|.++...++.+-...+.+-+.........-...+|..+...|+.+++....+...
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455555555555444333333322222222233455555566677666655555544
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=32.36 E-value=1.9e+02 Score=26.03 Aligned_cols=94 Identities=11% Similarity=0.045 Sum_probs=43.2
Q ss_pred HHHhhHhhhcCCCC-HHHHHHHHHhhccCChhhHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHH
Q psy6893 715 GCLGLGLAAMGSAR-DDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFI 793 (988)
Q Consensus 715 A~LGLGla~~Gs~~-~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi 793 (988)
+...+|.++...++ ++....+...+..++... .+-+.+|.++...++.+-.-...+.+.....+...-...+|..+.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA--RYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 44555555555554 233444444443333221 122344444444445443333332222222222223445666667
Q ss_pred hcCCchhHHHHHHHHhc
Q psy6893 794 MYGQLENADDLVRDLCE 810 (988)
Q Consensus 794 ~~Gr~e~a~~li~~L~~ 810 (988)
..|+.+.+...++....
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77787777766665544
No 152
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=31.86 E-value=3.9e+02 Score=26.50 Aligned_cols=170 Identities=11% Similarity=0.067 Sum_probs=83.7
Q ss_pred cCChHHHHHHHhhcCCCCCCCCCccchhhHHHHHhhhccC------CchHHHHHHHHHhhhcCchhhHHHHHHhhHhhhc
Q psy6893 651 RGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHAN------HGAVINDYLLGQVKDATNEMVRHGGCLGLGLAAM 724 (988)
Q Consensus 651 ~gn~~~~l~~L~~yL~~~~~s~~~~~k~GAL~AlGlI~ag------~~~~~~~~Ll~~l~~s~~~~ir~gA~LGLGla~~ 724 (988)
.++.++++..+..-+.. + ..-+++.+|.++.. ...+++.++..-+.. . ...+...||.+|.
T Consensus 55 ~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~----~~~a~~~lg~~~~ 121 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDL----N----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-K----YAEGCASLGGIYH 121 (273)
T ss_dssp CCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-C----CccHHHHHHHHHH
Confidence 67888888888877641 1 34566667766643 233456555444322 1 2346667777775
Q ss_pred C----CCC-HHHHHHHHHhhccCChhhHHHHHHHhhcccCC----CCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHh-
Q psy6893 725 G----SAR-DDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLG----SKSESAIQDMVAYAKETQHEKILRGLAVGISFIM- 794 (988)
Q Consensus 725 G----s~~-~dv~~~L~~~l~~D~~~~~e~AalAlGLI~vG----s~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~- 794 (988)
- ..+ ++.+..+...+..++.. +-+.+|.++.- .++.+-.-.+.+...+..+ ..-...+|..+..
T Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~~~~----a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~g 195 (273)
T 1ouv_A 122 DGKVVTRDFKKAVEYFTKACDLNDGD----GCTILGSLYDAGRGTPKDLKKALASYDKACDLKD--SPGCFNAGNMYHHG 195 (273)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHhcCcHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHcC
Confidence 4 444 34455555544333222 23344444432 4454444333333322222 1112223332333
Q ss_pred ---cCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcC----CCChhHHHHHHHH
Q psy6893 795 ---YGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCG----SGSNVATKRLLHD 843 (988)
Q Consensus 795 ---~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaG----tGnvl~iq~lL~~ 843 (988)
.++.+.+...++......++ ...+.++..|.- .||..+..+.+..
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~~~----~a~~~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELENG----GGCFNLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHhCCCH----HHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 55666666666655544332 334556666665 5555444444433
No 153
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=31.77 E-value=4.2e+02 Score=26.98 Aligned_cols=127 Identities=9% Similarity=-0.041 Sum_probs=73.2
Q ss_pred ecCChHHHHHHHhcccCCCCCCCCCccc--hhHHHHHhhhccCCCC--chhHHHHHHhhhhcCCCchhHHHHHHHHHHHh
Q psy6893 288 HRGHETEALAHMQSYLPRETGPTSGYYE--GGGLYALGLIHANHGA--VINDYLLGQVKDATNEDDAVTGEAAGIAMGLV 363 (988)
Q Consensus 288 h~~~~~~gl~~l~~yL~s~~~~~~~y~~--~GaL~alGli~~g~~~--~~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~ 363 (988)
..++.++++..+.+.+-.. +..+..+ .-..+++|.++.+.++ ....++...|.-....++......+-..||.+
T Consensus 87 ~~~~y~~a~~~~~~~l~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 164 (293)
T 3u3w_A 87 KQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI 164 (293)
T ss_dssp HTTCHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHhccc--cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 3457788888888877532 1122222 3344568888776542 23444444444222223333233356789999
Q ss_pred hccCCChh-HHH---HHHHhhhhc--c-hHHHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q psy6893 364 LLGSKSES-AIQ---DMVAYAKET--Q-HEKILRGLAVGISFIMYGQLENADDLVRDLCE 416 (988)
Q Consensus 364 ~~Gs~~~~-~~~---~L~~~~~dt--~-~E~~~r~lalgl~~v~~g~~e~a~~li~~L~~ 416 (988)
|.-.++-+ +++ ..+.+.... . ...+..-..+|.++.-.|+.+.|-..++..++
T Consensus 165 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 98888755 332 233333333 2 23355567888888899999988888776654
No 154
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=31.55 E-value=93 Score=33.50 Aligned_cols=100 Identities=13% Similarity=0.093 Sum_probs=53.0
Q ss_pred HHHHhhcccCCCCCHHHHHHHHHHHHhcccchh---hhHHHHHHHHHhcCCchhHHHHHHHHhcccc-hhhhhhcHHHHH
Q psy6893 750 AGIAMGLVLLGSKSESAIQDMVAYAKETQHEKI---LRGLAVGISFIMYGQLENADDLVRDLCEEKD-AILRRSGMYTIA 825 (988)
Q Consensus 750 AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i---~R~lalgLgLi~~Gr~e~a~~li~~L~~~~d-p~~r~~~~~~ls 825 (988)
+.+.+|+++.-.+..+-...+++-..... ++. .-.+.+|.++..+|+.+++...++.....+. |.......+
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~--- 212 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAW--- 212 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHH---
Confidence 55666666666665544444333111111 111 1345667667777777777666665543222 322111222
Q ss_pred HHHcCCCChhHHHHHHHHHHHhhhhhhhhhhhccCCCchHHHHHhhhhhccCCC
Q psy6893 826 MAYCGSGSNVATKRLLHDAILRRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVN 879 (988)
Q Consensus 826 lAyaGtGnvl~iq~lL~~~~~~~lG~alia~g~~~tgn~~air~ll~~~~sd~~ 879 (988)
..|+++..+|+. +.|...|-.+...+|+
T Consensus 213 ----------------------~~glaL~~lGr~----deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 213 ----------------------YLAMARRSQGNE----SAAVALLEWLQTTHPE 240 (282)
T ss_dssp ----------------------HHHHHHHHHTCH----HHHHHHHHHHHHHSCC
T ss_pred ----------------------HHHHHHHHcCCH----HHHHHHHHHHHhcCCc
Confidence 345556666665 6677777667667776
No 155
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=31.32 E-value=4.1e+02 Score=26.54 Aligned_cols=93 Identities=15% Similarity=0.103 Sum_probs=49.2
Q ss_pred HHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcC
Q psy6893 751 GIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCG 830 (988)
Q Consensus 751 alAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaG 830 (988)
-..+|.++.-.++.+-...+++-+.....+...-...+|..+...|+.+.+...++......... ....+.++..|.-
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY--VRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence 34455555555565544444433322222222234455555666788887777776655432111 1234566777777
Q ss_pred CCChhHHHHHHHHHH
Q psy6893 831 SGSNVATKRLLHDAI 845 (988)
Q Consensus 831 tGnvl~iq~lL~~~~ 845 (988)
.|+.....+.+..+.
T Consensus 253 ~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAI 267 (327)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHH
Confidence 778766666655543
No 156
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=31.30 E-value=2.8e+02 Score=26.86 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=14.5
Q ss_pred hhhhhhhhhccCCCchHHHHHhhhhhccCCCh
Q psy6893 849 SGMYTIAMAYCGSGSNVATKRLLHVAVSDVND 880 (988)
Q Consensus 849 lG~alia~g~~~tgn~~air~ll~~~~sd~~~ 880 (988)
.|++.+.+|.- ..|+..|-..+..+|+.
T Consensus 163 ~g~~~~~~~~~----~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 163 DGLSKLFTTRY----EKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHTH----HHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHccCH----HHHHHHHHHHHHhCCCH
Confidence 34444444442 55666665555555543
No 157
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=31.13 E-value=3.7e+02 Score=26.02 Aligned_cols=104 Identities=10% Similarity=-0.026 Sum_probs=59.3
Q ss_pred ccchhHHHHHhhhccCCCC--chhHHHHHHhhh---hcCCCchhHHHHHHHHHHHhhccCCChhHH-HHH---HHhhhh-
Q psy6893 313 YYEGGGLYALGLIHANHGA--VINDYLLGQVKD---ATNEDDAVTGEAAGIAMGLVLLGSKSESAI-QDM---VAYAKE- 382 (988)
Q Consensus 313 y~~~GaL~alGli~~g~~~--~~~d~l~~lL~~---~~~~d~~~~~~aA~lglGL~~~Gs~~~~~~-~~L---~~~~~d- 382 (988)
...+-+++.+|.++...+. .....+...+.- ....++ .....+-..+|.+|.-.++.+-. +.+ +.+...
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDH-PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC-HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3456677777777765553 122222222221 111222 23344666788888888876533 322 222221
Q ss_pred --c-chHHHHHHHHHHHHHHhcCChhhHHHHHHHHhhc
Q psy6893 383 --T-QHEKILRGLAVGISFIMYGQLENADDLVRDLCEE 417 (988)
Q Consensus 383 --t-~~E~~~r~lalgl~~v~~g~~e~a~~li~~L~~~ 417 (988)
. .......-..+|.++...|+.+.|...++..+..
T Consensus 119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 2344566677888899999999999888877764
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=30.81 E-value=1.5e+02 Score=26.30 Aligned_cols=25 Identities=8% Similarity=-0.178 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHh
Q psy6893 785 GLAVGISFIMYGQLENADDLVRDLC 809 (988)
Q Consensus 785 ~lalgLgLi~~Gr~e~a~~li~~L~ 809 (988)
...+|..+...|+.+++...++...
T Consensus 54 ~~~lg~~~~~~g~~~~A~~~~~~al 78 (121)
T 1hxi_A 54 WRSLGLTQAENEKDGLAIIALNHAR 78 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445554555566555555444433
No 159
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=30.44 E-value=4.9e+02 Score=27.15 Aligned_cols=195 Identities=12% Similarity=0.000 Sum_probs=100.8
Q ss_pred ceecCChHHHHHHHhcccCCCCCCCCCccchhHHHHHhhhccCCCC--chhHHHHHHhhhhcCCCchhHHHHHHHHHHHh
Q psy6893 286 VIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--VINDYLLGQVKDATNEDDAVTGEAAGIAMGLV 363 (988)
Q Consensus 286 ~Ih~~~~~~gl~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~~--~~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~ 363 (988)
.+..++.++++..+..-+... +.+++...+-++..+|.++...+. .....+...+.-.-...+......+-..+|.+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 445789999998877655321 112334456677777776654432 11222222222111123333444456678888
Q ss_pred hccCCChhHH----HHHHHhhhhcc----hHHHHHHHHHHHHHHhcCChhhHHHHHHHHhhcchhhhhccchhHHHHHhh
Q psy6893 364 LLGSKSESAI----QDMVAYAKETQ----HEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYC 435 (988)
Q Consensus 364 ~~Gs~~~~~~----~~L~~~~~dt~----~E~~~r~lalgl~~v~~g~~e~a~~li~~L~~~~d~~lr~~~~~~~~l~l~ 435 (988)
+.-.++-+-. +..+.+..... .........+|.++...|+.+.+...++..++..... +.+........
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~ 179 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY---QPQQQLQCLAM 179 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---CGGGGHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc---CcHHHHHHHHH
Confidence 8888875533 22233322211 1223444557888889999999998888766532211 10111112234
Q ss_pred hhhhhcccc----chhhHHh---h-cc---chhHH-----HHHhhhccCCCHHHHHHHHHHhccC
Q psy6893 436 VSYLYFDLF----SDLTYRI---V-KN---RSGMY-----TIAMAYCGSGSNVATKRLLHVAVSD 484 (988)
Q Consensus 436 Lgll~~g~~----~e~~l~~---~-~~---~~~~~-----~~~~AYaGTGN~~~Iq~LLhi~~s~ 484 (988)
+|.++...+ +...++. + +. |.... ..+..|...|+......++.-+...
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 555555444 2223321 2 21 11111 1223377889998888888777653
No 160
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=30.25 E-value=3.9e+02 Score=26.00 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=15.2
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHH
Q psy6893 821 MYTIAMAYCGSGSNVATKRLLHDAI 845 (988)
Q Consensus 821 ~~~lslAyaGtGnvl~iq~lL~~~~ 845 (988)
.+.++..|...|+.......+..+.
T Consensus 218 ~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 218 NFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666655554
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=30.08 E-value=2.1e+02 Score=26.32 Aligned_cols=60 Identities=15% Similarity=-0.001 Sum_probs=27.8
Q ss_pred HHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHHhc
Q psy6893 751 GIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCE 810 (988)
Q Consensus 751 alAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~~ 810 (988)
-+.+|.++...++.+-...+.+-+.+...+...-...+|..+...|+.+.+...++....
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 73 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV 73 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344555555555544433333333222222222334445545556666665555554443
No 162
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=29.63 E-value=6.1e+02 Score=27.99 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=20.5
Q ss_pred hHHHHhhcccchhhhhhhhcccc------cCChHHHHHHHhhcC
Q psy6893 628 LEWLARATNWAKLTATASLGVIH------RGHETEALAHMQSYL 665 (988)
Q Consensus 628 ~~wl~k~~~w~kfsA~ASLG~Ih------~gn~~~~l~~L~~yL 665 (988)
.+|+.++-+-+-..+...||.++ .+|.++++..+.+-.
T Consensus 171 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 214 (490)
T 2xm6_A 171 REWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSA 214 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence 44555544333344555555555 456666666665544
No 163
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=29.11 E-value=2.6e+02 Score=24.24 Aligned_cols=106 Identities=14% Similarity=0.038 Sum_probs=55.7
Q ss_pred CCccchhHHHHHhhhccCCCC--chhHHHHHHhhhhcCCCchhHHHHHHHHHHHhhccCCChhHH----HHHHHhhhhcc
Q psy6893 311 SGYYEGGGLYALGLIHANHGA--VINDYLLGQVKDATNEDDAVTGEAAGIAMGLVLLGSKSESAI----QDMVAYAKETQ 384 (988)
Q Consensus 311 ~~y~~~GaL~alGli~~g~~~--~~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~~~Gs~~~~~~----~~L~~~~~dt~ 384 (988)
++...+-+++.+|.+....+. ....++...+.-.....+......+-..+|.+|.-.++.+-. +..+.+..+..
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 445556667777776655442 122222222221111122333334566677777777765533 22333333332
Q ss_pred h--HHHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q psy6893 385 H--EKILRGLAVGISFIMYGQLENADDLVRDLCE 416 (988)
Q Consensus 385 ~--E~~~r~lalgl~~v~~g~~e~a~~li~~L~~ 416 (988)
. .....-..+|.++...|+.+.+...++..++
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 2244456778888888888888877766654
No 164
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=28.45 E-value=57 Score=38.75 Aligned_cols=51 Identities=20% Similarity=0.076 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHcCChHHHHHHHHHhhcCCCCchhHHHHHHHhh
Q psy6893 57 ILRTLVRLYHSLSVPDYVNMAQCWIYLDDPRSVANLLGKLVAGSADDDLMAAQIGFDL 114 (988)
Q Consensus 57 vL~lL~~ly~~~~~pDy~~~~qc~~~Lnd~~~va~il~~L~~~~~~~~l~ayQiaFdL 114 (988)
-+..+.++.+. ..+|-..-+|+++++|++.+.+++.++ +..-.|+++|=-.
T Consensus 725 ~~~~~~~~a~~--~~~~~~A~~~~~~~g~~~~a~~~~~~~-----~~~~~A~~lA~~~ 775 (814)
T 3mkq_A 725 GLVTLAKDAET--TGKFNLAFNAYWIAGDIQGAKDLLIKS-----QRFSEAAFLGSTY 775 (814)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHTCHHHHHHHHHHT-----TCHHHHHHHHHHT
T ss_pred HHHHHHHHHHH--cCchHHHHHHHHHcCCHHHHHHHHHHc-----CChHHHHHHHHHh
Confidence 34555566555 446888889999999999999999998 4444566655433
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=27.25 E-value=2.9e+02 Score=24.61 Aligned_cols=107 Identities=11% Similarity=0.008 Sum_probs=54.7
Q ss_pred HhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHHhcc-cchhhhhhcHHHHHHHHcCC
Q psy6893 753 AMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCEE-KDAILRRSGMYTIAMAYCGS 831 (988)
Q Consensus 753 AlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~~~-~dp~~r~~~~~~lslAyaGt 831 (988)
-+|.++.-.++.+-.-...+-+.+-..+...-..-+|..+...|+.+.+....+..... ++...- ....+-+|
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~a~~~--- 86 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD---YKLIAKAM--- 86 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHH---
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh---hHHHHHHH---
Confidence 35666666666543333332222222233333445666667778877766555543332 211110 11112222
Q ss_pred CChhHHHHHHHHHHHhhhhhhhhhhhccCCCchHHHHHhhhhhccCCChhhhh
Q psy6893 832 GSNVATKRLLHDAILRRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRR 884 (988)
Q Consensus 832 Gnvl~iq~lL~~~~~~~lG~alia~g~~~tgn~~air~ll~~~~sd~~~~vrr 884 (988)
.++|.++..+|+- ..|+..+-..+..+|++++.+
T Consensus 87 ---------------~~lg~~~~~~~~~----~~A~~~~~kal~~~~~~~~~~ 120 (127)
T 4gcn_A 87 ---------------SRAGNAFQKQNDL----SLAVQWFHRSLSEFRDPELVK 120 (127)
T ss_dssp ---------------HHHHHHHHHTTCH----HHHHHHHHHHHHHSCCHHHHH
T ss_pred ---------------HHHHHHHHHcCCH----HHHHHHHHHHHhhCcCHHHHH
Confidence 2466777777765 677777766665566666554
No 166
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=26.82 E-value=2.5e+02 Score=25.08 Aligned_cols=57 Identities=9% Similarity=-0.075 Sum_probs=28.4
Q ss_pred HhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHHh
Q psy6893 753 AMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLC 809 (988)
Q Consensus 753 AlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~ 809 (988)
-.|..+.-.|+.+-.-...+-+.+.......-..-+|..+...|+.+.+....+...
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 74 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCI 74 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence 456666666665433333332222222333334455555666677766555555443
No 167
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=26.76 E-value=2.8e+02 Score=23.17 Aligned_cols=105 Identities=10% Similarity=-0.013 Sum_probs=0.0
Q ss_pred HHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCC
Q psy6893 752 IAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGS 831 (988)
Q Consensus 752 lAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGt 831 (988)
+.+|.++.-.++.+-...+.+-......+...-...+|..+...|+.+.+...++............- +.++..|.-.
T Consensus 16 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 93 (131)
T 2vyi_A 16 KTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY--GRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHH--HHHHHHHHHh
Q ss_pred CChhHHHHHHHHHHH---------hhhhhhhhhhhc
Q psy6893 832 GSNVATKRLLHDAIL---------RRSGMYTIAMAY 858 (988)
Q Consensus 832 Gnvl~iq~lL~~~~~---------~~lG~alia~g~ 858 (988)
|+.....+.+..+.. ..+|.++..+|+
T Consensus 94 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 94 NKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
No 168
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=26.75 E-value=2.1e+02 Score=35.21 Aligned_cols=30 Identities=7% Similarity=0.058 Sum_probs=19.6
Q ss_pred HHHHHHHHHhccC-CCchhhHHHHHHHHHHh
Q psy6893 472 VATKRLLHVAVSD-VNDDVRREAVTALGFIL 501 (988)
Q Consensus 472 ~~Iq~LLhi~~s~-~~~dvrr~AV~~lg~I~ 501 (988)
..|+.|+.+|.+- .++++|..++..+--++
T Consensus 697 ~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 697 ELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 4566778888763 56677766666665555
No 169
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=26.43 E-value=4.5e+02 Score=25.48 Aligned_cols=138 Identities=11% Similarity=0.063 Sum_probs=77.8
Q ss_pred hhHHHhhccchhhHHhhhcccee--cCChHHHHHHHhcccCCCCCCCCCccchhHHHHHhhhccCCCCc--hhHHHHHHh
Q psy6893 266 LEWLARATNWAKLTATASLGVIH--RGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAV--INDYLLGQV 341 (988)
Q Consensus 266 ~~Wl~k~~~~~~~sAtASLG~Ih--~~~~~~gl~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~~~--~~d~l~~lL 341 (988)
..|+.++-+.+-..|.-.||.++ ..|.++++..+.+-.-. + -.-|++.||.+... +.. ..+-++..+
T Consensus 6 ~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 6 GSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----G----DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp THHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----T----CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 35888887777778888888876 47888888888776543 1 24677778887766 311 334444555
Q ss_pred hhhcCCCchhHHHHHHHHHHHhhcc----CCChhHHHHHHHhhhhcch--HHHHHHHHHHHHHHh----cCChhhHHHHH
Q psy6893 342 KDATNEDDAVTGEAAGIAMGLVLLG----SKSESAIQDMVAYAKETQH--EKILRGLAVGISFIM----YGQLENADDLV 411 (988)
Q Consensus 342 ~~~~~~d~~~~~~aA~lglGL~~~G----s~~~~~~~~L~~~~~dt~~--E~~~r~lalgl~~v~----~g~~e~a~~li 411 (988)
......+++ .|-+-||.+|.- ..+.+-.-.++.-+.+..+ ........+|..+.. .++.+.+-...
T Consensus 77 ~~A~~~g~~----~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 77 EKAVEAGSK----SGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHTTCH----HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHCCCH----HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 554433332 245667777753 3333322222222333323 224444556666554 45566666666
Q ss_pred HHHhh
Q psy6893 412 RDLCE 416 (988)
Q Consensus 412 ~~L~~ 416 (988)
+.-.+
T Consensus 153 ~~A~~ 157 (212)
T 3rjv_A 153 KGSSS 157 (212)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 170
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=24.29 E-value=4.4e+02 Score=24.64 Aligned_cols=37 Identities=5% Similarity=0.165 Sum_probs=19.4
Q ss_pred hHHHHHhhhccCCCHHHHHHHHHHhcc-CCCchhhHHH
Q psy6893 457 GMYTIAMAYCGSGSNVATKRLLHVAVS-DVNDDVRREA 493 (988)
Q Consensus 457 ~~~~~~~AYaGTGN~~~Iq~LLhi~~s-~~~~dvrr~A 493 (988)
..|-.|.+|...|+...-.+.+.-+.+ .++++.+..|
T Consensus 106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~~~~A 143 (151)
T 3gyz_A 106 PVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKA 143 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 344666677777776554444444433 3444444444
No 171
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=23.82 E-value=1.7e+02 Score=30.20 Aligned_cols=82 Identities=7% Similarity=-0.050 Sum_probs=51.0
Q ss_pred hcCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHcCCCChhHHHHHHHHHHHhhhhhhhhhhhccCCCchHHHHHhhhh
Q psy6893 794 MYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAILRRSGMYTIAMAYCGSGSNVATKRLLHV 873 (988)
Q Consensus 794 ~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAyaGtGnvl~iq~lL~~~~~~~lG~alia~g~~~tgn~~air~ll~~ 873 (988)
+....+.+...+.....++++..|+.++..+ +.|.. .++..-+-.++..
T Consensus 125 ~~~~p~~~~~~l~~W~~s~~~w~rR~ai~~~-l~~~~------------------------------~~d~~~~~~~i~~ 173 (232)
T 3jxy_A 125 FLKHPELISAYIPKWIASDNIWLQRAAILFQ-LKYKQ------------------------------KMDEELLFWIIGQ 173 (232)
T ss_dssp HHHCGGGGGGTHHHHHHSSCHHHHHHHHHTT-TTCGG------------------------------GCCHHHHHHHHHH
T ss_pred HHHCHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHh------------------------------CCCHHHHHHHHHH
Confidence 3334444555666666777777777755432 22221 2333333333344
Q ss_pred hccCCChhhhhhHHhhhhhhhhhhhhhhHhhhh
Q psy6893 874 AVSDVNDDVRREAVTALGFILFRKKRTRRKKKK 906 (988)
Q Consensus 874 ~~sd~~~~vrraa~~alg~i~~~npeq~pk~~k 906 (988)
...|++..|+.++..+|.-++..+|+.+-...+
T Consensus 174 ~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~ 206 (232)
T 3jxy_A 174 LHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQ 206 (232)
T ss_dssp HTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 467788999999999999999999887766554
No 172
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=23.37 E-value=4.4e+02 Score=24.29 Aligned_cols=124 Identities=14% Similarity=0.061 Sum_probs=70.8
Q ss_pred eecCChHHHHHHHhcccCCCCCCCCCccchhHHHHHhhhccCCCC--chhHHHHHHhhhhcCCCchhHHHHHHHHHHHhh
Q psy6893 287 IHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGA--VINDYLLGQVKDATNEDDAVTGEAAGIAMGLVL 364 (988)
Q Consensus 287 Ih~~~~~~gl~~l~~yL~s~~~~~~~y~~~GaL~alGli~~g~~~--~~~d~l~~lL~~~~~~d~~~~~~aA~lglGL~~ 364 (988)
+..++.+++..++.-+. .++...+-+++.+|.++...+. ....++...+.-....++......+-..+|.+|
T Consensus 3 ~~~g~~~~A~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 76 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVE 76 (203)
T ss_dssp ----CHHHHHHHHHHHH------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhc------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 45678888888433332 1334567788888887766553 122333222322222223444455677888888
Q ss_pred ccCCChhHH----HHHHHhhhhcc--h-HHHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q psy6893 365 LGSKSESAI----QDMVAYAKETQ--H-EKILRGLAVGISFIMYGQLENADDLVRDLCE 416 (988)
Q Consensus 365 ~Gs~~~~~~----~~L~~~~~dt~--~-E~~~r~lalgl~~v~~g~~e~a~~li~~L~~ 416 (988)
.-.++.+-. +..+.+..... . .....-..+|.+....|+.+.+...++..+.
T Consensus 77 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 77 RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888886533 23333333332 2 3355667788888889999988887776654
No 173
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=23.06 E-value=3.3e+02 Score=23.01 Aligned_cols=107 Identities=7% Similarity=-0.109 Sum_probs=0.0
Q ss_pred HHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHHhcccchhhhhhcHHHHHHHHc
Q psy6893 750 AGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYC 829 (988)
Q Consensus 750 AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~~~~dp~~r~~~~~~lslAya 829 (988)
+-+.+|.++.-.++.+-...+++-+.....+...-...+|..+...|+.+++...++............- +.++..|.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGY--TRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHH--HHHHHHHH
Q ss_pred CCCChhHHHHHHHHHHH---------hhhhhhhhhhhc
Q psy6893 830 GSGSNVATKRLLHDAIL---------RRSGMYTIAMAY 858 (988)
Q Consensus 830 GtGnvl~iq~lL~~~~~---------~~lG~alia~g~ 858 (988)
-.|+.....+.+..+.. ..+|.++..+|.
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
No 174
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=22.53 E-value=2.9e+02 Score=27.66 Aligned_cols=37 Identities=11% Similarity=0.129 Sum_probs=29.5
Q ss_pred ccHHHHHHHHHHcCChHHHHHHHHHhhcCCCCchhHHHHHHH
Q psy6893 71 PDYVNMAQCWIYLDDPRSVANLLGKLVAGSADDDLMAAQIGF 112 (988)
Q Consensus 71 pDy~~~~qc~~~Lnd~~~va~il~~L~~~~~~~~l~ayQiaF 112 (988)
-||....+|++++||.+...++|.+. .-.-.||-+|=
T Consensus 90 g~~n~af~~~l~lGdv~~~i~lL~~~-----~r~~eA~~~A~ 126 (177)
T 3mkq_B 90 EDFGSMLLNTFYNNSTKERSSIFAEG-----GSLPLAYAVAK 126 (177)
T ss_dssp TCHHHHHHHHHHHTCHHHHHHHHHHT-----TCHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHC-----CChHHHHHHHH
Confidence 47999999999999999999999887 33345555553
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=21.74 E-value=3.3e+02 Score=22.78 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHhc
Q psy6893 786 LAVGISFIMYGQLENADDLVRDLCE 810 (988)
Q Consensus 786 lalgLgLi~~Gr~e~a~~li~~L~~ 810 (988)
..+|..+...|+.+.+...++....
T Consensus 42 ~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 42 TNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHh
Confidence 3444445556777666666555443
No 176
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=21.48 E-value=2.7e+02 Score=25.65 Aligned_cols=18 Identities=11% Similarity=-0.160 Sum_probs=10.8
Q ss_pred hHHHHHhhhhhccCCChh
Q psy6893 864 NVATKRLLHVAVSDVNDD 881 (988)
Q Consensus 864 ~~air~ll~~~~sd~~~~ 881 (988)
..|+..+...+..+|++.
T Consensus 132 ~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 132 AQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHhhCCCCc
Confidence 566666666665565443
No 177
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=21.20 E-value=2.8e+02 Score=25.47 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=23.4
Q ss_pred HHHHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHH
Q psy6893 750 AGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRD 807 (988)
Q Consensus 750 AalAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~ 807 (988)
+.+.+|.++.-.++.+-....++-+.+...+...-...+|..+...|+.+.+....+.
T Consensus 33 ~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 90 (150)
T 4ga2_A 33 KGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRR 90 (150)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 4445555555555544333333322222222222233334434444555444444433
No 178
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=20.68 E-value=3.1e+02 Score=24.56 Aligned_cols=59 Identities=15% Similarity=-0.022 Sum_probs=29.5
Q ss_pred HHhhcccCCCCCHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCchhHHHHHHHHhc
Q psy6893 752 IAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCE 810 (988)
Q Consensus 752 lAlGLI~vGs~n~d~i~~ll~~~~etq~e~i~R~lalgLgLi~~Gr~e~a~~li~~L~~ 810 (988)
+.+|.++...++.+-...+.+-+.........-...+|..+...|+.+.+....+....
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44455555555554444433333332222333344555556666777666666655443
No 179
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=20.52 E-value=5e+02 Score=23.88 Aligned_cols=126 Identities=12% Similarity=0.047 Sum_probs=61.9
Q ss_pred hHHHHHHhhHhhhcCCCCHH-HHHHHHHhhc---c-CChhhHHHHHHHhhcccCCCCCHHHHHHHHHH----HHhcccch
Q psy6893 711 VRHGGCLGLGLAAMGSARDD-IYEQLKFNLY---Q-DDAVTGEAAGIAMGLVLLGSKSESAIQDMVAY----AKETQHEK 781 (988)
Q Consensus 711 ir~gA~LGLGla~~Gs~~~d-v~~~L~~~l~---~-D~~~~~e~AalAlGLI~vGs~n~d~i~~ll~~----~~etq~e~ 781 (988)
...-+...+|.++.-.++.+ ....+...+. . ++....-.+-..+|.+..-.++.+-...+.+- ......+.
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 44556777888887777743 4444433332 1 11111223555677777777776654443332 22222222
Q ss_pred hh---hHHHHHHHHHhcCCchhHHHHHHHHh----cccchhhhhhcHHHHHHHHcCCCChhH
Q psy6893 782 IL---RGLAVGISFIMYGQLENADDLVRDLC----EEKDAILRRSGMYTIAMAYCGSGSNVA 836 (988)
Q Consensus 782 i~---R~lalgLgLi~~Gr~e~a~~li~~L~----~~~dp~~r~~~~~~lslAyaGtGnvl~ 836 (988)
.. -...+|......|+.+.+...++... ...++.........++..|...|+...
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 165 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLE 165 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHH
Confidence 12 23344555566788877766665543 223333222223444444544444433
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=20.19 E-value=1.9e+02 Score=24.83 Aligned_cols=46 Identities=9% Similarity=0.088 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHhhcCCCCc---hhHHHHHHHhhccc
Q psy6893 72 DYVNMAQCWIYLDDPRSVANLLGKLVAGSADD---DLMAAQIGFDLYES 117 (988)
Q Consensus 72 Dy~~~~qc~~~Lnd~~~va~il~~L~~~~~~~---~l~ayQiaFdL~~~ 117 (988)
-|+.+..|+..+++.+.+.+.+.+++....++ ...-|.++.-+...
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHc
Confidence 47889999999999999999999998754444 44466666655543
Done!