RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6893
(988 letters)
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 302 bits (774), Expect = 4e-88
Identities = 146/365 (40%), Positives = 205/365 (56%), Gaps = 18/365 (4%)
Query: 544 DDFWPENEKEKQLQARITKLSKILSGEVSIDLHLQFLIRSNKTDMLILKNTKESI--RVS 601
E Q L ILSG + D + FL+ + D+ +L +K S+ + S
Sbjct: 278 QQLLEILVTELTAQGYDPALLNILSGLPTCDYYNTFLLNNKNIDIGLLNKSKSSLDGKFS 337
Query: 602 ICHTATIIANAFMHSGTTSDQFLRDNLEWLARATNWAKLTATASLGVIHRGHETEALAHM 661
+ HTA +AN FMH+GTT + F++ NL WL +A NWAK TATASLGVIH+G+ E M
Sbjct: 338 LFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVM 397
Query: 662 QSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDAT-------NEMVRHG 714
YLP + +S + +GG LY LGLI+A G DYL + + + +++ HG
Sbjct: 398 APYLP-GSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHG 456
Query: 715 GCLGLGLAAMGSARDDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYA 774
LG+GLAAMGSA ++YE LK LY D A +GEAA + MGL +LG+ AI DM Y+
Sbjct: 457 ASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYS 516
Query: 775 KETQHEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSN 834
+ETQH I RGLAVG++ I YG+ E ADDL+ + +++LR G +TIA+AY G+G+N
Sbjct: 517 QETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN 576
Query: 835 VATKRLLHDAI------LRRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVT 888
A KRLLH A+ +RR+ + + + R++ + N VR
Sbjct: 577 SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT--TVPRIVQLLSKSHNAHVRCGTAF 634
Query: 889 ALGFI 893
ALG
Sbjct: 635 ALGIA 639
Score = 266 bits (681), Expect = 2e-75
Identities = 160/544 (29%), Positives = 233/544 (42%), Gaps = 150/544 (27%)
Query: 1 MDVFEAAIKQMTPPRSFTTRSRWPCPPFSRVHSALKSCVPWCLAMSSIQSRSFRAQILRT 60
+D+ E+A+K S + + + + LA++++ + FR+ ILR
Sbjct: 174 LDIIESALKSKLDQDSTSENVKI-----------INYLLT--LAITTVTNSKFRSSILRK 220
Query: 61 LVRLYHSLSVPDYVNMAQCWIYLDDPRSVANLLGKLVAGSADDDLMAAQIGFDLYESATQ 120
++ DY+ + + + L+D +A Q+ L E +
Sbjct: 221 SFDFLMNMPNCDYLTLNKVVVNLNDAG------------------LALQLFKKLKEENDE 262
Query: 121 AFLASVLQELKTCAPIPDATHVVVKVPVEGAPTPATPDTEAPTPAPGTESGPSSTTPGPE 180
A + +L + A +
Sbjct: 263 GLSAQIAFDLVSSASQQLLEIL-------------------------------------- 284
Query: 181 TKTLESLNEKEKQLQARITKLSKILSGEVSIDLHLQFLIRSNKTDMLILKNTKESI--RV 238
E Q L ILSG + D + FL+ + D+ +L +K S+ +
Sbjct: 285 --------VTELTAQGYDPALLNILSGLPTCDYYNTFLLNNKNIDIGLLNKSKSSLDGKF 336
Query: 239 SICHTATIIANAFMHSGTTSDQFLRDNLEWLARATNWAKLTATASLGVIHRGHETEALAH 298
S+ HTA +AN FMH+GTT + F++ NL WL +A NWAK TATASLGVIH+G+ E
Sbjct: 337 SLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKV 396
Query: 299 MQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDATNE----------- 347
M YLP + +S + +GG LY LGLI+A G DYL + + +
Sbjct: 397 MAPYLP-GSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLH 455
Query: 348 ----------------------------DDAVTGEAAGIAMGLVLLGSKSESAIQDMVAY 379
D A +GEAA + MGL +LG+ AI DM Y
Sbjct: 456 GASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTY 515
Query: 380 AKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCVSYL 439
++ETQH I RGLAVG++ I YG+ E ADDL+ + +++LR
Sbjct: 516 SQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLR---------------- 559
Query: 440 YFDLFSDLTYRIVKNRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGF 499
G +TIA+AY G+G+N A KRLLHVAVSD NDDVRR AV ALGF
Sbjct: 560 ---------------YGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGF 604
Query: 500 ILFR 503
+L R
Sbjct: 605 VLLR 608
Score = 62.9 bits (152), Expect = 4e-10
Identities = 32/234 (13%), Positives = 72/234 (30%), Gaps = 16/234 (6%)
Query: 681 LYALGLIHANHGAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDDIYEQLKFNLY 740
Y L++ + + D + + G G+ + + L
Sbjct: 309 YYNTFLLNNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLG 368
Query: 741 QDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEK--ILRGLAVGISFIMYGQL 798
+ A ++G++ G+ E + M Y ++ I G G+ I G
Sbjct: 369 KAQNWAKFTATASLGVIHKGNLLE-GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG 427
Query: 799 ENADDLVRDLCEE--------KDAILRRSGMYTIAMAYCGSGSNVATKRLLH-----DAI 845
+ D ++++ E +L I +A GS + + L A
Sbjct: 428 RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSAT 487
Query: 846 LRRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRKKR 899
+ + + G+G A + + + ++ R L I + ++
Sbjct: 488 SGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541
Score = 45.2 bits (106), Expect = 1e-04
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 519 GVISLLDDPMIELKEFSLKKLNDIVDDFWPE 549
+++LL + +K ++L+ +N++VD W E
Sbjct: 19 PLLALLRENQDSVKTYALESINNVVDQLWSE 49
Score = 38.3 bits (88), Expect = 0.014
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 934 KKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ K+ EK+ + K + KK KK+K +++KKKE E+ +K+ E +K
Sbjct: 801 EASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKK 855
Score = 36.7 bits (84), Expect = 0.047
Identities = 16/83 (19%), Positives = 36/83 (43%)
Query: 885 EAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMK 944
+ TA+ R K +K KK ++KKK+ E ++ ++ + +K+ K++ E+
Sbjct: 809 KVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFY 868
Query: 945 KKGAEKIGKKKKKKKKKKKKKKK 967
K K + ++ +
Sbjct: 869 KNKYSSKPYKVDNMTRILPQQSR 891
Score = 34.0 bits (77), Expect = 0.30
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 932 KMKKKKKDAEKMKKKGAEK-IGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+M ++ E K A + K + KK KK+K +++KK+ + K+K E K
Sbjct: 797 RMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNK 854
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 78.0 bits (191), Expect = 1e-14
Identities = 102/611 (16%), Positives = 180/611 (29%), Gaps = 195/611 (31%)
Query: 298 HMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDA-----TNED-DAV 351
H ++ ETG Y+ ++ A ++++ V+D + E+ D +
Sbjct: 2 HHHHHMDFETGEHQYQYKD-------ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI 54
Query: 352 TGEAAGIAMGLVLLG---SKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENAD 408
++ L L SK E +Q V E++LR I Y L +
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFV--------EEVLR--------INYKFLMSP- 97
Query: 409 DLVRDLCEEKDAILRRSGMYTIAMAYCVSYLYFD--LFSDLT-YRI-----VKN-----R 455
++ + + R MY LY D +F+ R+ ++ R
Sbjct: 98 --IKTEQRQPSMMTR---MYI----EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 456 SGMYTI--AMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRTLFYVAPACT 513
+ + GSG K + DV + + + F +F
Sbjct: 149 PAKNVLIDGVL--GSG-----KTWV---ALDVCLSYKVQ--CKMDFKIF----------- 185
Query: 514 RSPWPGVISL--LDDPMIELKEFSLKKLNDIVDDFWPENEKEKQLQARITKLSKILSGEV 571
W ++L + P L+ L+KL +D +R S I
Sbjct: 186 ---W---LNLKNCNSPETVLEM--LQKLLYQID---------PNWTSRSDHSSNIKLRIH 228
Query: 572 SIDLHLQFLI--RSNKTDMLILKNTKESIRVSICHTATIIANAFMHS----GTTSDQFLR 625
SI L+ L+ + + +L+L N + + NAF S TT + +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLN--------VQNAKAW--NAFNLSCKILLTTRFKQVT 278
Query: 626 DNLEWLARATNWAKLTATASLGVIHRG-HETEALAHMQSY-------LPRETGPTSGYYE 677
D L A T SL E + + Y LPRE
Sbjct: 279 DFLS--------AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-------L 323
Query: 678 GGGLYALGLIHANHGAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDDIYEQLKF 737
L +I I D L AT + +H + + + + L+
Sbjct: 324 TTNPRRLSII----AESIRDGL------ATWDNWKH-----VNCDKLTTIIESSLNVLEP 368
Query: 738 N----LYQDDAVTGEAAGIAMG-LVLL-GSKSESAIQDMVAYAKETQHEKILRGLAVGIS 791
++ +V +A I L L+ +S + +V
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV-------------------- 408
Query: 792 FIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAILRRSGM 851
+ L + EK + +I + N LH +I+
Sbjct: 409 ----------NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA---LHRSIVDH--- 452
Query: 852 YTIAMAYCGSG 862
Y I +
Sbjct: 453 YNIPKTFDSDD 463
Score = 48.7 bits (115), Expect = 1e-05
Identities = 55/389 (14%), Positives = 99/389 (25%), Gaps = 138/389 (35%)
Query: 530 ELKEFSLKKLNDIVDDFWPENEKEKQLQARITKLSKILSGEVSIDLHLQFLIRSNKTDML 589
E E + DI+ F + ILS E ID ++
Sbjct: 10 ETGEHQYQY-KDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-ID------------HII 55
Query: 590 ILKNTKESIRV---SICHTATIIANAFMHSGTTSDQFLRDNLEWLARATNWAKLTATASL 646
+ K+ ++ + F+ ++ LR N ++L + +
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFV------EEVLRINYKFL-----MSPI------ 98
Query: 647 GVIHRGHETEALAHMQSYLPRETGPTSGY-YEGGGLYALGLIHANHGAVINDYLLGQVKD 705
+ P + T Y + LY N V Y V
Sbjct: 99 -------------KTEQRQP--SMMTRMYIEQRDRLY-------NDNQVFAKY---NVS- 132
Query: 706 ATNEMVRHGGCLGLGLAAMGSARDDIYEQLKFNLYQDDAVTGEAAGIA---MGLVLLGS- 761
R Y +L+ L + A + + GS
Sbjct: 133 ----------------------RLQPYLKLRQALLELR----PAKNVLIDGVL----GSG 162
Query: 762 KSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVR---DLCEEKDAILRR 818
K+ A+ V K+ + I ++ + + ++ L
Sbjct: 163 KTWVALD--VC-----LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL--------- 206
Query: 819 SGMYTIAMAYCGSGSNVATKRLLHDAILRRSGMYTIAMAYCGSGSNVATKRLLHVAVSDV 878
Y I + + + +L +I + Y LL V
Sbjct: 207 ---YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--------LL------V 249
Query: 879 NDDVR-REAVTALGF---ILFRKKRTRRK 903
+V+ +A A IL TR K
Sbjct: 250 LLNVQNAKAWNAFNLSCKILL---TTRFK 275
Score = 47.9 bits (113), Expect = 2e-05
Identities = 69/579 (11%), Positives = 152/579 (26%), Gaps = 182/579 (31%)
Query: 1 MDVFEAAIKQM-TPPRSFTTRSRWPCPPFSRVHSALKSCVP--------------WCLAM 45
++ ++ + F + P+ ++ AL P +A+
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 46 SSIQSRSFRAQILRTLVRLYHSLSVPD---YVNMAQCWIYLDDPRSVANLLGKLVA---- 98
S + ++ ++N+ C + P +V +L KL+
Sbjct: 169 DVCLSYKVQCKM-------------DFKIFWLNLKNC----NSPETVLEMLQKLLYQIDP 211
Query: 99 --GSADDDLMAAQIGFDLYESATQAFLASVLQELKTCAPIPDATHV----VV-------K 145
S D ++ ++ + L S + + C + +V K
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKS--KPYENCLLVLL--NVQNAKAWNAFNLSCK 267
Query: 146 VPVEGAPTPATPDTE-------APTPAPGTESGPSSTTPGPETKTL--ESLNEKEKQLQA 196
+ + T T + A T + + TP E K+L + L+ + + L
Sbjct: 268 ILL----T--TRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPR 320
Query: 197 RITKLSKILSGEVSIDLHLQFLIRSNKTDMLILKNTKESIRVSICHTATIIANAFMHSGT 256
+ + ++ + L + + I S+ +
Sbjct: 321 EVLTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSL---------NVLEPAE 370
Query: 257 TSDQF-----LRDN-------LEWLARATNWAKLTATASLGVIHRGHETEA-LAHMQSYL 303
F + L + W + + + + + Y
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLI-----WFDVIKS----------DVMVVVNKLHKYS 415
Query: 304 PRETGPTSGYYEGGGLYALGLIHAN-----HGAVINDYLLGQVKDATNEDDAVTGEAAGI 358
E P +Y + H ++++ Y + + DD +
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY---NIPKTFDSDDLIPPYL--- 469
Query: 359 AMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMY--GQLENAD--DLVRDL 414
D Y S I + +E+ + L R +
Sbjct: 470 ----------------DQYFY-----------------SHIGHHLKNIEHPERMTLFRMV 496
Query: 415 ------CEEKDAILRRSGMYTIAMAYCVSYLYFDLFSDL-TYR--IVKNRSGMYTIAMAY 465
E+K +R A+ S + L Y+ I N + A
Sbjct: 497 FLDFRFLEQK---IRHDST-----AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Query: 466 C----GSGSNVAT---KRLLHVAVSDVNDDVRREAVTAL 497
N+ LL +A+ ++ + EA +
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 73.2 bits (179), Expect = 4e-13
Identities = 96/613 (15%), Positives = 164/613 (26%), Gaps = 228/613 (37%)
Query: 45 MSSIQSRSFRAQILRTLV--RLYHSLSVP--DYVNMAQCW--------------IYLDDP 86
M + +R TL L H L VP + +Q D+P
Sbjct: 1 MDAYSTRPL------TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP 54
Query: 87 RSVANLLGK---LVA--------GSADDDLMAAQIGFD---LYESATQAFLASVLQELKT 132
+ A L+GK V+ G D L F+ L + A A +LQE T
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 133 CAPIPDATHVVVKVPVEGAPTPATPDTEAPTPA--PGTESGPSS---------------- 174
T ++K + P + A G +
Sbjct: 115 TLV---KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 175 ------TTPGPE--------TKTLESLNEKEKQLQARITK-------LSK---------I 204
T +TL L + T+ L +
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 205 LSGEVS---IDLHLQFL--IRSNKTDMLILKNTKESIRVSICHTATIIANAFMHSGTTSD 259
LS +S I + +Q + + K + ++ + H+ ++ + + +
Sbjct: 232 LSIPISCPLIGV-IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 260 QFL---RDNLEWLARATNWAKLTATASLGVIHRGHET------EALAHMQSYLPRETGPT 310
F R + L + +GV R +E S E P+
Sbjct: 291 SFFVSVRKAITVLF----F--------IGV--RCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 311 SGYYEGGGLYALGLIHANHGAV------INDYL--LGQVKDA-TNEDDA--VTGEAAGIA 359
L + + V N +L QV+ + N V+G +
Sbjct: 337 ---------PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 360 MGLV--LLGSKSESAI-QDMVAYAKE-----TQ--------HEKILRG---------LAV 394
GL L +K+ S + Q + +++ + H +L +
Sbjct: 388 -GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 395 GISFIMYGQLENADDL---V------RDLCEEKDAILRRSGMYTIAMAYCVSYLYFDL-- 443
+SF NA D+ V DL +I R I + ++
Sbjct: 447 NVSF-------NAKDIQIPVYDTFDGSDLRVLSGSISER-----IVDCIIRLPVKWETTT 494
Query: 444 ---------F--------SDLTYRIVKNRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVN 486
F LT+R G+G R++ D+N
Sbjct: 495 QFKATHILDFGPGGASGLGVLTHRNKD-------------GTGV-----RVIVAGTLDIN 536
Query: 487 DDVRREAVTALGF 499
D GF
Sbjct: 537 PD------DDYGF 543
Score = 67.4 bits (164), Expect = 2e-11
Identities = 98/667 (14%), Positives = 179/667 (26%), Gaps = 263/667 (39%)
Query: 117 SATQAFLASVLQE--LKTCAPIPDATHVVVKVPVEGAPTPATPDTEAPTPAPGTESGPSS 174
F+AS LQE K +P PT + P++
Sbjct: 23 PTASFFIASQLQEQFNKI---LP-----------------------EPTEGFAADDEPTT 56
Query: 175 TTPGPETKTLESLNEKEKQLQARITKLSKILSGEVSIDLHLQFLIRSNKTDMLILKNTKE 234
E L + L ++ S+ + + +
Sbjct: 57 P--------AE--------LVGKF----------------LGYV--SSLVEPSKVGQFDQ 82
Query: 235 SIRVSICHTATIIANAFMHSGTTSDQFLRDNLEWLARATNWAKL-TATASLGVIHRGHET 293
+ + + F + +L N + A L +
Sbjct: 83 VLNLCLTE--------F------ENCYLEGN-----------DIHALAAKLLQENDTTLV 117
Query: 294 EALAHMQSYL--------PRETGPTSGYYEGGGLYALGLIHANHG-AVINDYLL--GQVK 342
+ +++Y+ P + S AL G A + + GQ
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNS---------AL-FRAVGEGNAQL--VAIFGGQ-- 163
Query: 343 DATNED--DAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLA--VGISF 398
+D + E L L + D++ ++ ET L L +
Sbjct: 164 -GNTDDYFE----E-------LRDLYQTYHVLVGDLIKFSAET-----LSELIRTTLDAE 206
Query: 399 IMYGQ-------LENADDLVRDLCEEKDAILRRSGMYTIAMAYC-VSYLYFDLFSDLTYR 450
++ Q LEN + Y + +S + Y
Sbjct: 207 KVFTQGLNILEWLENPSN-------------TPDKDY---LLSIPISCPLIGVIQLAHYV 250
Query: 451 IVKNRSGMYTIAMAYCGSGSNVATKRLLH---VAVSDVNDDVRREAVTALGFILFRTLFY 507
+ G + G+ ++ L+ +A +D + A+ LF+
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI-----TVLFF 305
Query: 508 VAPACTR-----SPWPGVISLLDD----------PMIELKEFSLKKLNDIVDDF---WPE 549
+ C S P S+L+D PM+ + + +++ D V+ P
Sbjct: 306 IGVRCYEAYPNTSLPP---SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 550 NEKEKQLQARITKL-----SKILSGEVSIDLH-LQFLIRSNKTDMLILKNTKESIRVSIC 603
+ Q I+ L + ++SG L+ L +R K + + R+
Sbjct: 363 GK-----QVEIS-LVNGAKNLVVSGPPQ-SLYGLNLTLRKAKA-----PSGLDQSRIPFS 410
Query: 604 HTATIIANAFM------HS---GTTSDQFLRD----NLEWLARATNWAKLTATASLG--V 648
+N F+ HS SD +D N+ + A + V
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA-----------KDIQIPV 459
Query: 649 IH-------RGHE---TEALAHMQSYLP---------RET-----GPTSGYYEGGGLYAL 684
R +E + LP + T GP GG L
Sbjct: 460 YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP-------GGASGL 512
Query: 685 G-LIHAN 690
G L H N
Sbjct: 513 GVLTHRN 519
Score = 45.0 bits (106), Expect = 2e-04
Identities = 50/317 (15%), Positives = 96/317 (30%), Gaps = 106/317 (33%)
Query: 656 EALAHMQSYL-------PRETGPTSGYYEGGGLYALGLIHANH----------GAVINDY 698
A H + P + GG I N+ G + +
Sbjct: 1648 RADNHFKDTYGFSILDIVIN-NPVNLTIHFGGEKGKR-IRENYSAMIFETIVDGKLKTEK 1705
Query: 699 LLGQVKDATNEMVRHG--GCLGL------GLAAMGSARDDIYEQLKFN-LYQDDAVT--- 746
+ ++ + + G L L M A +E LK L DA
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA---AFEDLKSKGLIPADATFAGH 1762
Query: 747 --GE-AAGIAMGLVLLGSKS-ESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENAD 802
GE AA ++ V+ S ES + ++V Y RG+ + + A
Sbjct: 1763 SLGEYAALASLADVM----SIESLV-EVVFY----------RGMTM----------QVA- 1796
Query: 803 DLVRDLCEEKDAILRRS-GMYTIAMAYCGSGSNVATKRLLHDAILRRSGMY-TIAMAYCG 860
+D + R + GM I + + + + + + +R+G I Y
Sbjct: 1797 -------VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV-NY-- 1846
Query: 861 SGSNVATKRLLHVAVS-DVNDDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKK 919
NV ++ + D+ A+ + +L K +K
Sbjct: 1847 ---NVENQQ---YVAAGDL------RALDTVTNVL-----------------NFIKLQKI 1877
Query: 920 EAEKMRKKKGAEKMKKK 936
+ +++K E+++
Sbjct: 1878 DIIELQKSLSLEEVEGH 1894
Score = 40.8 bits (95), Expect = 0.003
Identities = 78/486 (16%), Positives = 139/486 (28%), Gaps = 180/486 (37%)
Query: 530 ELKEFSLKKLNDIVDDFWPENEKEKQ--LQAR-------------------ITKL----- 563
+L+E K L + + F ++E L + + L
Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF 91
Query: 564 -SKILSGEVSIDLH--LQFLIRSNKTDML----ILKN------------TKES----IRV 600
+ L G D+H L++ N T ++ ++KN K+S R
Sbjct: 92 ENCYLEGN---DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 601 SICHTATIIANAFMHSGTTSDQF--LRD------------------NLEWLARATNWAKL 640
A ++A F G T D F LRD L L R T A+
Sbjct: 149 VGEGNAQLVA-IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 641 TATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAV---IND 697
T L ++ + YL + P S +G+I H V +
Sbjct: 208 VFTQGLNILEWLENPSN-TPDKDYL--LSIPIS-------CPLIGVIQLAHYVVTAKLLG 257
Query: 698 YLLGQVKDATNEMVRHGGCLGLGLA-AMGSARDDIYEQLK------F------------- 737
+ G+++ H L +A A + + + ++ F
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 738 ----NLYQDDAVTGEAAGIAMGLVLLG---SKSESAIQDMVAYAKETQHEKILRGLAVGI 790
++ +D E M L + + + + ++ + V I
Sbjct: 318 SLPPSILEDSLENNEGVPSPM-LSISNLTQEQVQDYVNKTNSHLPAGKQ--------VEI 368
Query: 791 SFIMYGQLENADD-LV-----RDLCEEKDAILRRSGMYTIAMAYCGSGSNVA----TKR- 839
S L N LV + L LR+ A SG + + ++R
Sbjct: 369 S------LVNGAKNLVVSGPPQSLYGLNLT-LRK--------AKAPSGLDQSRIPFSERK 413
Query: 840 -----------------LLHDA---ILRRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVN 879
LL A I + ++ + + + + V D
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF----NAKD------IQIPVYDTF 463
Query: 880 D--DVR 883
D D+R
Sbjct: 464 DGSDLR 469
Score = 38.9 bits (90), Expect = 0.011
Identities = 38/218 (17%), Positives = 63/218 (28%), Gaps = 96/218 (44%)
Query: 26 PPFS--RVHSAL-KSCVPWCLAMSSIQSRS-FRAQILRTLVR-L-----YHSLSVPDYVN 75
PP S ++ L K+ P QSR F + L+ R L +HS
Sbjct: 382 PPQSLYGLNLTLRKAKAP----SGLDQSRIPFSERKLKFSNRFLPVASPFHS---H---- 430
Query: 76 MAQCWIYLDDPRSVANLLGKLVAGSADDDLMAAQIGF---DL----YESAT----QAFLA 124
L + + DL+ + F D+ Y++ +
Sbjct: 431 ------LLVP-----------ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG 473
Query: 125 SVLQELK---TCAPI-------PDATHVVVKVPVEGAPTPATPDTEAPTPAPGTESGPSS 174
S+ + + P+ ATH++ G PG SG
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKATHILDF----G---------------PGGASG--- 511
Query: 175 TTPGPETKTLESLNEKEKQLQ-ARITKLSKILSGEVSI 211
L L + K R+ I++G + I
Sbjct: 512 ---------LGVLTHRNKDGTGVRV-----IVAGTLDI 535
Score = 33.1 bits (75), Expect = 0.56
Identities = 56/372 (15%), Positives = 103/372 (27%), Gaps = 151/372 (40%)
Query: 230 KNTKESIRVSICHTATIIANA----FMHSGTTSDQFLRDNLEWLARATNWAKLTATASLG 285
+ K++ SI I+ N +H G + +R+N + T
Sbjct: 1651 NHFKDTYGFSILD---IVINNPVNLTIHFGGEKGKRIRENYSAMIFETI----------- 1696
Query: 286 VIHRGHETEALAHMQSYLPRETGPTSGY-YEG--GGLY-------ALGLIHANHGAVIND 335
+ + ++ Y + G L AL L+ A D
Sbjct: 1697 -------VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK---AAFED 1746
Query: 336 YLLGQVKDA--TNEDDAVTGEAAGIAMGLVL-LGSKSE-SAIQDMVAYAKETQHEKILRG 391
+K D AG LG E +A + + A
Sbjct: 1747 -----LKSKGLIPADATF----AG------HSLG---EYAA---LASLA----------D 1775
Query: 392 LAVGISFIMYGQLENADDLVRDLCEEKDAILRRSGMYTIAMAYCVSYLYFDLFSDLTYRI 451
+ +S E+ ++V R GM M V
Sbjct: 1776 V---MSI------ESLVEVVF---------YR--GM---TMQVAVP-------------- 1798
Query: 452 VKNRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRTLFYVAPA 511
++ G M G A+ A+ V + V + G++ V
Sbjct: 1799 -RDELGRSNYGMIAINPGRVAAS--FSQEALQYVVERVGKRT----GWL-------VEIV 1844
Query: 512 ---CTRSPWPG---VISLLDDPMIELKEFSLKKLNDIVDDFWPENEKEKQLQARITKLSK 565
V + +L+ +L + ++++ K +++ I +L K
Sbjct: 1845 NYNV-----ENQQYVAAG------DLR--ALDTVTNVLNFI-----KLQKID--IIELQK 1884
Query: 566 ILSGEVSIDLHL 577
LS E ++ HL
Sbjct: 1885 SLSLE-EVEGHL 1895
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 59.8 bits (144), Expect = 3e-10
Identities = 14/82 (17%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 911 IRKKKKKKKEAEKMRKKKGAEKMKK--KKKDAEKMKKKGAEKIGKKKKKK-----KKKKK 963
I + + +E E +RK + E+ +K ++ DA + ++ +K KK +++ +
Sbjct: 74 IAQADRLTQEPESIRKWR--EEQRKRLQELDAASKVME--QEWREKAKKDLEEWNQRQSE 129
Query: 964 KKKKKKKKKKKEAEKMKKKTEE 985
+ +K K + + ++ +
Sbjct: 130 QVEKNKINNRIADKAFYQQPDA 151
Score = 53.6 bits (128), Expect = 4e-08
Identities = 13/72 (18%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 920 EAEKMRKKKGAEKMKK-KKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKK--KKKKKEA 976
+A+++ ++ E ++K +++ +++++ A K +++ ++K KK ++ +++ ++
Sbjct: 76 QADRLTQE--PESIRKWREEQRKRLQELDAA--SKVMEQEWREKAKKDLEEWNQRQSEQV 131
Query: 977 EKMKKKTEEAEK 988
EK K A+K
Sbjct: 132 EKNKINNRIADK 143
Score = 40.5 bits (94), Expect = 0.001
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEK 942
++ K + ++ R+K KK E R+ + EK K + A+K
Sbjct: 99 QELDAASKVME--QEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 59.1 bits (142), Expect = 3e-09
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 899 RTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKK 958
+T R+ + K + K A + K EK KK K KK KK KK
Sbjct: 333 KTMRRNTILRQAKNHKLRMDKAAAA-LEAKSEEKGVPGKKPRRKKGKKTVGV--KKPKKP 389
Query: 959 KKKKKKKKKKKKKKKKEAEKMKKKTEE 985
KK KK K+ + K TEE
Sbjct: 390 VVGKKAAATKKPAADKKPAEKKPTTEE 416
Score = 56.8 bits (136), Expect = 2e-08
Identities = 21/85 (24%), Positives = 33/85 (38%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
+R ++ K+R K K +K K ++KK + + K +K K
Sbjct: 334 TMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGK 393
Query: 956 KKKKKKKKKKKKKKKKKKKEAEKMK 980
K KK KK +KK E+ K
Sbjct: 394 KAAATKKPAADKKPAEKKPTTEEKK 418
Score = 55.6 bits (133), Expect = 4e-08
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 893 ILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIG 952
IL + K + + K A + K ++K K ++K +K KK + + K K
Sbjct: 340 ILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGK---KAA 396
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEA 976
KK KK +KK ++KK A
Sbjct: 397 ATKKPAADKKPAEKKPTTEEKKPA 420
Score = 55.6 bits (133), Expect = 4e-08
Identities = 21/84 (25%), Positives = 34/84 (40%)
Query: 895 FRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKK 954
R+ R+ K ++ K + + + G + +KK K +KK +GKK
Sbjct: 335 MRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKK 394
Query: 955 KKKKKKKKKKKKKKKKKKKKEAEK 978
KK KK +KK E +K
Sbjct: 395 AAATKKPAADKKPAEKKPTTEEKK 418
Score = 53.7 bits (128), Expect = 2e-07
Identities = 18/91 (19%), Positives = 31/91 (34%)
Query: 895 FRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKK 954
+ R K A+ +R+ ++ + A + K + + + K + K
Sbjct: 319 LKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGK 378
Query: 955 KKKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
K KK KK KK + KK E
Sbjct: 379 KTVGVKKPKKPVVGKKAAATKKPAADKKPAE 409
Score = 36.4 bits (83), Expect = 0.040
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 897 KKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGA 948
KK R+K KK + KK + KK A+K +KK + KK A
Sbjct: 370 KKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKKPAA 421
Score = 35.6 bits (81), Expect = 0.081
Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 7/100 (7%)
Query: 859 CGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKK 918
T R + N +R + A +K KK + + + KK
Sbjct: 326 LKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKK 385
Query: 919 KEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKK 958
+ + KK A K KK AEK ++KK
Sbjct: 386 PKKPVVGKKAAATKKPAA-------DKKPAEKKPTTEEKK 418
>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_Y
Length = 293
Score = 55.6 bits (133), Expect = 3e-08
Identities = 21/95 (22%), Positives = 29/95 (30%)
Query: 894 LFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGK 953
L +R RKK AEK ++ K E+ K K ++ K
Sbjct: 182 LITPERILRKKVYKAEKTQRYVKTNAAKEEYEKFLSEWKKQRAAKAHAASAPVVEAPKKV 241
Query: 954 KKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ KK K K K A +A K
Sbjct: 242 EAPKKVDPKAAKTTPAATKATPAATKVAPKTQAAK 276
Score = 36.4 bits (83), Expect = 0.035
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 901 RRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKK--KGAEKIGKKKKKK 958
R+ K A I+K KKE + + KK + K + K K I ++ +
Sbjct: 131 RKLGPKRANNIKKLFGLKKEDDPILIKKSVIRRTFKTAKGKDRTKCPKIQRLITPERILR 190
Query: 959 KKKKKKKKKKKKKKKKEAEKMKKK 982
KK K +K ++ K A++ +K
Sbjct: 191 KKVYKAEKTQRYVKTNAAKEEYEK 214
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 51.2 bits (122), Expect = 1e-07
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 897 KKRTRRKKK-------KGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAE 949
KKRTRR K I K+ +K E K ++++ A + K+ K A++ KK A
Sbjct: 69 KKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQ-AIRAAKEAKKAKQASKKTAM 127
Query: 950 KIGKKKKKKKKKKKKKKKKKKKKKKEAEK 978
K K K+K K K + K
Sbjct: 128 AAAKAPTKAAPKQKIVKPVKVSAPRVGGK 156
Score = 50.8 bits (121), Expect = 2e-07
Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 12/107 (11%)
Query: 894 LFRKKRTRRKKK--KGAEKIRKKKKKKKEAEKMRKK----------KGAEKMKKKKKDAE 941
F KR R+ + KK + ++ +K ++ + K+
Sbjct: 39 AFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKP 98
Query: 942 KMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+++K E+ + K+ KK K+ KK K K K + +
Sbjct: 99 EVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKP 145
Score = 40.4 bits (94), Expect = 6e-04
Identities = 11/59 (18%), Positives = 22/59 (37%)
Query: 897 KKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
+ R ++++ KK K+ + A K+ K K A ++G K+
Sbjct: 99 EVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157
Score = 38.5 bits (89), Expect = 0.003
Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 14/93 (15%)
Query: 910 KIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGA--------------EKIGKKK 955
K K+ ++ + KK + E KK+ I K+
Sbjct: 35 KCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKR 94
Query: 956 KKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+K + +K ++++ + KEA+K K+ +++
Sbjct: 95 NQKPEVRKAQREQAIRAAKEAKKAKQASKKTAM 127
Score = 30.4 bits (68), Expect = 1.8
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 19/91 (20%)
Query: 917 KKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKK-------------------K 957
K K+ ++ K KK +E+I KK+
Sbjct: 33 NAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMA 92
Query: 958 KKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K+ +K + +K ++++ A K KK ++A K
Sbjct: 93 KRNQKPEVRKAQREQAIRAAKEAKKAKQASK 123
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 52.6 bits (125), Expect = 2e-07
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGA---EKMKKKKKDAEKMKKKGAEKIGKKKKKK 958
KKKK A KKK K KKK E +KKK+++ ++K K + +KK
Sbjct: 6 EKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVK-------RLRKK 58
Query: 959 KKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K +K ++K ++A+ K+ + +
Sbjct: 59 FALKTLRKARRKLIYEKAKHYHKEYRQMYR 88
Score = 46.8 bits (110), Expect = 2e-05
Identities = 14/86 (16%), Positives = 37/86 (43%)
Query: 897 KKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKK 956
+T +KK + KKK++ K+++ + +K +K K+ + A+ K+ +
Sbjct: 25 GPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYR 84
Query: 957 KKKKKKKKKKKKKKKKKKEAEKMKKK 982
+ + + + + +K + K
Sbjct: 85 QMYRTEIRMARMARKAGNFYVPAEPK 110
Score = 43.7 bits (102), Expect = 2e-04
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 900 TRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKK 959
T +KK K KKK +K++ ++K ++++KK A K +K ++K
Sbjct: 17 TLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELK-----VKRLRKKFALKTLRKARRKL 71
Query: 960 KKKKKKKKKKKKKKKEAEKMKKK 982
+K K K+ ++ +++
Sbjct: 72 IYEKAKHYHKEYRQMYRTEIRMA 94
Score = 34.5 bits (78), Expect = 0.15
Identities = 11/78 (14%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 893 ILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIG 952
L +K+R + K + + K ++A + + A+ K+ + + +I
Sbjct: 39 TLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYR------TEIR 92
Query: 953 KKKKKKKKKKKKKKKKKK 970
+ +K + K
Sbjct: 93 MARMARKAGNFYVPAEPK 110
Score = 32.9 bits (74), Expect = 0.45
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 920 EAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKM 979
EA +KKK A KK K +K+ + KKK++ + K K+ ++ +
Sbjct: 2 EAVPEKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFAL 61
Query: 980 KKK 982
K
Sbjct: 62 KTL 64
Score = 29.8 bits (66), Expect = 4.0
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 931 EKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
E + +KKK + +K+ K KKK + KKK++ ++K K
Sbjct: 2 EAVPEKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRK 57
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 53.6 bits (128), Expect = 2e-07
Identities = 14/103 (13%), Positives = 36/103 (34%)
Query: 878 VNDDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKK 937
+ R K + KI KK++ +A + K A+ K
Sbjct: 444 SYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKD 503
Query: 938 KDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMK 980
+K+ + + + + +++ K + + +++ K+ K
Sbjct: 504 AKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSK 546
Score = 45.9 bits (108), Expect = 6e-05
Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 13/129 (10%)
Query: 873 VAVSDVNDDVRR--EAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGA 930
+ +N ++ E +TA F + T +++ K + K + + A
Sbjct: 394 LNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVA 453
Query: 931 EKM---KKKKKDAEKMKKKGAEKIGKKKKK--------KKKKKKKKKKKKKKKKKEAEKM 979
+ K EK KI KK++ K K K K K KK E
Sbjct: 454 ILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESK 513
Query: 980 KKKTEEAEK 988
KK + E+
Sbjct: 514 KKAVQRLEE 522
Score = 42.4 bits (99), Expect = 8e-04
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 912 RKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKK 971
++ K E M + + K++ DA + K K K K K KK + KKK
Sbjct: 459 QRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKS--AKADAKVMKDAKTKKVVESKKKA 516
Query: 972 KKKEAEKMKKKTEEAEK 988
++ E++ K +A
Sbjct: 517 VQRLEEQLMKLEVQATD 533
Score = 38.6 bits (89), Expect = 0.009
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 2/93 (2%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
K+ + + ++ K K + + KK E KK + E+ K + ++
Sbjct: 478 DAKKEQLADAR--RDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDRE 535
Query: 956 KKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ K+ K + KK EK
Sbjct: 536 ENKQIALGTSKLNYLDPRITVAWCKKWGVPIEK 568
Score = 34.7 bits (79), Expect = 0.17
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K K K K KK + KKKK K+ E+ K K E E+
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEER 36
Score = 34.3 bits (78), Expect = 0.22
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K K K KK + KKKK KKE E+ K EE
Sbjct: 2 PKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERY 37
Score = 32.8 bits (74), Expect = 0.71
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 7/103 (6%)
Query: 881 DVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDA 940
D ++E + L K + K K + KKK + E +++
Sbjct: 478 DAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREEN 537
Query: 941 EKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKT 983
+++ K + KK EK+ KT
Sbjct: 538 KQIAL-------GTSKLNYLDPRITVAWCKKWGVPIEKIYNKT 573
Score = 32.4 bits (73), Expect = 0.81
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K K K KK + KKKK KK+E +K K EE
Sbjct: 3 KNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYP 38
Score = 30.5 bits (68), Expect = 3.1
Identities = 10/59 (16%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 922 EKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMK 980
++M ++ K D +M + + + +K+ K++K K K++ +K ++
Sbjct: 110 KEMTNEEKNIITNLSKCDFTQMSQYFKAQ---TEARKQMSKEEKLKIKEENEKLLKEYG 165
Score = 29.3 bits (65), Expect = 7.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 950 KIGKKKKKKKKKKKKKKKKKKKKKKEAE 977
K K K KK + KKKK KK++E +
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQK 28
Score = 29.0 bits (64), Expect = 8.6
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 934 KKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKK-KKEAEKMKKK 982
++K + K ++ + K + + +K+ K++K K K+E EK+ K+
Sbjct: 114 NEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 163
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 50.5 bits (120), Expect = 2e-07
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 12/95 (12%)
Query: 895 FRKKRTRRKKK-------KGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKG 947
+K+ +R E+I ++K +K +K ++K+KK
Sbjct: 69 IAQKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKA-----NDIE 123
Query: 948 AEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKK 982
++ +K + K K KK + KK K+ K KK
Sbjct: 124 KKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGKK 158
Score = 47.5 bits (112), Expect = 3e-06
Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 15/110 (13%)
Query: 894 LFRKKRTRRKKK--KGAEKIRKKKKKKKEAEKMRKK----------KGAEKMKKK---KK 938
L +K +K ++ KK K A+K +K+ E++ ++
Sbjct: 41 LSLRKVKAQKITWTIARRRLWKKVKATDIAQKKKKRNVTVARAIVGISLEEINRRKNLDA 100
Query: 939 DAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+K + + A + K+KK +KK+ +K + K +A K + + +
Sbjct: 101 SHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQP 150
Score = 35.5 bits (81), Expect = 0.033
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 892 FILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEK 950
+ ++KK +KK+ + + K A K + KK + + KG +K
Sbjct: 106 EAEKAVRELKQKKAN------DIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGKK 158
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 52.6 bits (126), Expect = 4e-07
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 877 DVNDDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKK 936
D++ D R E + +KKR ++KK KG +++ KE+ + + +
Sbjct: 17 DLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSA-AGEQEPDKESGASVDEVARQLERSA 75
Query: 937 KKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKE 975
+D E+ + KKKKKKKKK+ K + +
Sbjct: 76 LEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTD 114
Score = 52.2 bits (125), Expect = 6e-07
Identities = 17/76 (22%), Positives = 32/76 (42%)
Query: 903 KKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKK 962
KKK+ +K K E E ++ + ++ + ++ K ++ +
Sbjct: 36 KKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGA 95
Query: 963 KKKKKKKKKKKKEAEK 978
KKKKKKKKK+ +
Sbjct: 96 TGKKKKKKKKKRGPKV 111
Score = 49.1 bits (117), Expect = 5e-06
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGA---EKIG 952
R++ ++ A+K R+KKKK K +++ ++ + + ++ A ++
Sbjct: 23 REEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERD 82
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTE 984
+ + KKKKKKK+ K +T+
Sbjct: 83 EDDEDGDGDGDGATGKKKKKKKKKRGPKVQTD 114
Score = 44.1 bits (104), Expect = 2e-04
Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 903 KKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKK- 961
+++ A + KKK+ +K K A ++ K++ + A ++ + + K++
Sbjct: 23 REEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERD 82
Query: 962 ----KKKKKKKKKKKKKEAEKMKKKTEEA 986
KK+ +K KK+ +
Sbjct: 83 EDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 35.7 bits (82), Expect = 0.080
Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEKMKK--KKKDAEKMKKKGAEKIGKKKKKKKKKKKKKK 966
E + + +++GA + KK K KK +++ K+
Sbjct: 6 EVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVD 65
Query: 967 KKKKKKKKEAEKMKKKTEEAEK 988
+ ++ ++ A + K++ E+ E
Sbjct: 66 EVARQLERSALEDKERDEDDED 87
Score = 33.0 bits (75), Expect = 0.50
Identities = 13/66 (19%), Positives = 24/66 (36%)
Query: 922 EKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
E++ D E+ AE+ KKK++KKKK K +++ +
Sbjct: 5 EEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASV 64
Query: 982 KTEEAE 987
+
Sbjct: 65 DEVARQ 70
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 52.1 bits (124), Expect = 6e-07
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
K A+ ++++ KK EA K K +K +K A+ KK I
Sbjct: 325 TNNNALFKLNPAAKIVKEQAKKAAEA---SKAKRQATLKANRKAAKTHKKGSQAWIAAFN 381
Query: 956 KKKKKKKKKKKKKKKKKKKEAEKMKKKTE 984
K ++ K +++ + +++K+ E
Sbjct: 382 KANEEAIAKARQEDADFIAQGQEIKEGDE 410
Score = 51.4 bits (122), Expect = 8e-07
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 1/93 (1%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRK-KKGAEKMKKKKKDAEKMKKKGAEKIGKK 954
T +KK K A+ +++ K A + K K+ A + A K KK
Sbjct: 312 GTTETHERKKNPLTNNNALFKLNPAAKIVKEQAKKAAEASKAKRQATLKANRKAAKTHKK 371
Query: 955 KKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
+ K ++ K E + E
Sbjct: 372 GSQAWIAAFNKANEEAIAKARQEDADFIAQGQE 404
Score = 49.8 bits (118), Expect = 3e-06
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 1/88 (1%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKK-KKKDAEKMKKKGAEKIGKKKKKKKK 960
+ RKK + A+ +K+ KK AE K K + +K K
Sbjct: 309 KVAGTTETHERKKNPLTNNNALFKLNPAAKIVKEQAKKAAEASKAKRQATLKANRKAAKT 368
Query: 961 KKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
KK + K E+ K + +
Sbjct: 369 HKKGSQAWIAAFNKANEEAIAKARQEDA 396
Score = 44.4 bits (104), Expect = 2e-04
Identities = 12/78 (15%), Positives = 28/78 (35%)
Query: 911 IRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKK 970
++ + K + K A+ +K++ + K K++ K +K K
Sbjct: 308 VKVAGTTETHERKKNPLTNNNALFKLNPAAKIVKEQAKKAAEASKAKRQATLKANRKAAK 367
Query: 971 KKKKEAEKMKKKTEEAEK 988
KK ++ +A +
Sbjct: 368 THKKGSQAWIAAFNKANE 385
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 49.3 bits (117), Expect = 6e-07
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 896 RKKRTRRKKK----------KGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKK 945
+K+R KK + +K R +K + ++A + + ++ KK KD +K
Sbjct: 71 KKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKK--- 127
Query: 946 KGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKK 982
A+K K +K + K ++ K K K+
Sbjct: 128 --AKKAEVAKSQKTQSKGGATQRGAKGPKIGGGGGKR 162
Score = 46.6 bits (110), Expect = 5e-06
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 16/111 (14%)
Query: 894 LFRKKRTRRK-----------KKKGAEKIRKKKKKKKEAEKMRKKKGA--EKMKKK---K 937
F + K KK + KK+++ + R GA E ++KK K
Sbjct: 41 YFHNRLKPAKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEK 100
Query: 938 KDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ ++ A + K++ KK K +KK KK + K ++ + T+ K
Sbjct: 101 PEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAK 151
Score = 41.2 bits (96), Expect = 4e-04
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 895 FRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEK 950
R+ R K++ + +KK KK E K +K + ++ K+ G ++
Sbjct: 107 AREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGPKIGGGGGKR 162
Score = 33.9 bits (77), Expect = 0.13
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 11/90 (12%)
Query: 910 KIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKK-----------KKK 958
K ++ + + K+ K KK AE +KK+ +KK
Sbjct: 37 KCKRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKK 96
Query: 959 KKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ +K + + ++ K + K + EK
Sbjct: 97 RSEKPEVRDAAREAALREIKERIKKTKDEK 126
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 52.0 bits (125), Expect = 9e-07
Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 11/107 (10%)
Query: 882 VRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAE 941
R L I++ + RR K R+ KK K EA E+ KK E
Sbjct: 879 ARVHYHRTLKAIVYLQCCYRRMMAK-----RELKKLKIEARS------VERYKKLHIGLE 927
Query: 942 KMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ KI ++ K+ K +K + E EK++ E
Sbjct: 928 NKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974
Score = 49.3 bits (118), Expect = 5e-06
Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 3/109 (2%)
Query: 883 RREAVTALGFILFRKKRTRRKKKKGAEKIR---KKKKKKKEAEKMRKKKGAEKMKKKKKD 939
+ V + KK K + KK E + M+ ++ ++ K+ K
Sbjct: 887 LKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS 946
Query: 940 AEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ + +K + ++ + +++ K ++ EE K
Sbjct: 947 LLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAK 995
Score = 45.1 bits (107), Expect = 1e-04
Identities = 15/101 (14%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRK--KKGAEKMKKKKKDAEKMKKKGAEKIGK 953
K + + +K + + E++R ++ + E++ K E
Sbjct: 944 YKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQT 1003
Query: 954 KKKKKKKKKKKKKKKKKKKKKEAE------KMKKKTEEAEK 988
+ +KK ++ K K + ++ +E +K + EE +
Sbjct: 1004 QTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR 1044
Score = 42.0 bits (99), Expect = 0.001
Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 19/114 (16%)
Query: 894 LFRKKRTRRKKKKGAEKIRKKKK---KKKEAEKMRK-----KKGAEKMKKKKKDAEKMKK 945
R T ++ + A I+K ++ +K + MR + + K +++
Sbjct: 805 QARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLRE 864
Query: 946 KGAEKIGKKKKKKKKKKKKKKKKK-----------KKKKKEAEKMKKKTEEAEK 988
+ I K + + + K K+E +K+K + E+
Sbjct: 865 HKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVER 918
Score = 41.6 bits (98), Expect = 0.001
Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKK---KGAEKMKKKKKDAEKMKKKGAEKIG 952
K + KI ++ K+ K + + + +K + D E+++ E
Sbjct: 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKN 981
Query: 953 KKKKKKKKKKKKKKKKK-----KKKKKEAEKMKKKTEE 985
+ +++ K +K + +KK E+ K +
Sbjct: 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH 1019
Score = 35.5 bits (82), Expect = 0.096
Identities = 10/99 (10%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 895 FRKKRTRRKKKKGAEKIRK---KKKKKKEAEKMRKKKGAEKMKKKKKDAEKMK-----KK 946
+ ++ + ++ A I++ + + A +R+ + A ++K ++ K +
Sbjct: 781 WLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRD 840
Query: 947 GAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
+ + + K + ++ K +K +
Sbjct: 841 ATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLA 879
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 51.4 bits (123), Expect = 2e-06
Identities = 21/106 (19%), Positives = 54/106 (50%)
Query: 883 RREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEK 942
+++A L + + + +K EK++ + + EAE+MR + A+K + ++ E
Sbjct: 873 QQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEM 932
Query: 943 MKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ E+ ++ + +KKK +++ +++ E E+ ++ + EK
Sbjct: 933 EARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK 978
Score = 49.8 bits (119), Expect = 5e-06
Identities = 17/93 (18%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
+ R KK++ E + + + + +E E+ ++ AEK KK ++ +++ ++ +++
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEK-KKMQQQMLDLEE----QLEEEE 968
Query: 956 KKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
++K + +K K KK + + ++ K
Sbjct: 969 AARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001
Score = 47.1 bits (112), Expect = 3e-05
Identities = 11/93 (11%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
+ ++ + +K++ ++ E + + E+ ++ + KKK +++ +
Sbjct: 905 TELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAE---KKKMQQQMLDLE 961
Query: 956 KKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
++ ++++ ++K + +K K+KK ++
Sbjct: 962 EQLEEEEAARQKLQLEKVTADGKIKKMEDDILI 994
Score = 44.1 bits (104), Expect = 2e-04
Identities = 14/88 (15%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 898 KRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKK 957
R ++++ + +KKK +++ + ++ E+ + ++ + K KI KK +
Sbjct: 934 ARIEEEEERSQQLQAEKKKMQQQMLDLEEQL--EEEEAARQKLQLEKVTADGKI-KKMED 990
Query: 958 KKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
+ + K K++K E+
Sbjct: 991 DILIMEDQNNKLTKERKLLEERVSDLTT 1018
Score = 44.1 bits (104), Expect = 2e-04
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMK--KKKKDAEKMKKKGAEKIGK 953
R ++ + +KKK +++ +++ +E E R+K EK+ K K E ++ K
Sbjct: 942 RSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001
Query: 954 KKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K++K +++ +E EK K T+ K
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036
Score = 38.7 bits (90), Expect = 0.012
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 898 KRTRRK----KKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGK 953
+ R+K K KI+K + E K+ K++K E+ + +
Sbjct: 968 EAARQKLQLEKVTADGKIKKMEDDILIMEDQN-----NKLTKERKLLEERVSDLTTNLAE 1022
Query: 954 KKKKKKKKKKKKKKKKKKK---KKEAEKMKKKTEEAEK 988
+++K K K K K + + +K +K +E EK
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1060
Score = 37.5 bits (87), Expect = 0.026
Identities = 16/105 (15%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKK---------KGAEKMKKKKKDAEKMKKK 946
+K + + ++++K K K++ K +K +K +++ EK+K+K
Sbjct: 1005 ERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064
Query: 947 ---GAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ + ++ + + + + K + KK++E + + E+
Sbjct: 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETS 1109
Score = 36.0 bits (83), Expect = 0.084
Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEK--MKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKK- 965
++ K K++K E+ ++K K+ K+K K I + + + KK++K +
Sbjct: 997 DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQ 1056
Query: 966 --KKKKKKKKKEAEKMKKKTEEAEK 988
+K K+K + E+ + ++ E +
Sbjct: 1057 ELEKIKRKLEGESSDLHEQIAELQA 1081
Score = 34.8 bits (80), Expect = 0.15
Identities = 17/102 (16%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKM---------RKKKGAEKMKKKKKDAEKMKKK 946
R + EK + K K + E M +++K ++++K K+ E
Sbjct: 1012 RVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSD 1071
Query: 947 GAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
E+I + + + + K + KK+++ + +++ +T +
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNN 1113
Score = 34.8 bits (80), Expect = 0.19
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 913 KKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKK---KKKKKKKKKKKK 969
K + KKE E E +K +A K ++ I ++ +K + K +K+K
Sbjct: 1087 KAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQK 1146
Query: 970 KKKKKEAEKMKKKTEEAEK 988
+ +E E +K + E+
Sbjct: 1147 RDLSEELEALKTELEDTLD 1165
Score = 34.4 bits (79), Expect = 0.25
Identities = 14/88 (15%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 901 RRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKK 960
+++K E++ E E+ K K K + +E + E+ K +++ +K
Sbjct: 1003 TKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE--KSRQELEK 1060
Query: 961 KKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K+K + + ++ +++ + E +
Sbjct: 1061 IKRKLEGESSDLHEQIAELQAQIAELKA 1088
Score = 33.7 bits (77), Expect = 0.41
Identities = 15/92 (16%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 897 KKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKK 956
+ R ++++K E +K K+K E E + +++ + + + K E++
Sbjct: 1045 EVRLKKEEKSRQEL--EKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102
Query: 957 KKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ + + +K KK ++ + E+ E
Sbjct: 1103 RLEDETSQKNNALKKIRELESHISDLQEDLES 1134
Score = 33.3 bits (76), Expect = 0.53
Identities = 15/95 (15%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 896 RKKRTR-RKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKK 954
K R K K+ E ++ + + + ++ KK+++ + + ++ +K
Sbjct: 1052 EKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQK 1111
Query: 955 KKKKKKKKKKKKKKKK-KKKKEAEKMKKKTEEAEK 988
KK ++ + ++ E+EK + E +K
Sbjct: 1112 NNALKKIRELESHISDLQEDLESEKAARNKAEKQK 1146
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 50.2 bits (119), Expect = 2e-06
Identities = 15/80 (18%), Positives = 23/80 (28%), Gaps = 5/80 (6%)
Query: 901 RRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKK 960
K + + KK + + + K KD + KK +K K
Sbjct: 252 FLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVD 311
Query: 961 KKKKKK-----KKKKKKKKE 975
K K K KK +
Sbjct: 312 KSGMKSIDAFFGAKNKKTGK 331
Score = 44.8 bits (105), Expect = 9e-05
Identities = 17/68 (25%), Positives = 20/68 (29%), Gaps = 1/68 (1%)
Query: 915 KKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKK-KK 973
K K E K K D K+ K K K KK K +K K
Sbjct: 250 SKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAK 309
Query: 974 KEAEKMKK 981
+ MK
Sbjct: 310 VDKSGMKS 317
Score = 42.1 bits (98), Expect = 6e-04
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 5/136 (3%)
Query: 837 TKRLLHDAILRRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFR 896
L + + + + + A G S + + A ++D + +E L L
Sbjct: 196 VVALKANNVNVGARVQSSAYFSGGQVSRDKEEDYVRYAHGLISDYIPKELSDDLSKFLKL 255
Query: 897 KKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKK 956
+ ++K++ + + E K + KK +K K+ K
Sbjct: 256 PEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGM 315
Query: 957 KK-----KKKKKKKKK 967
K K KK K
Sbjct: 316 KSIDAFFGAKNKKTGK 331
Score = 41.7 bits (97), Expect = 9e-04
Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 7/89 (7%)
Query: 904 KKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKK 963
++ ++ + KK + K+ K GKK K +K
Sbjct: 246 SDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQK 305
Query: 964 KKKKKKKKKKKEAEKM----KKKTEEAEK 988
K K K + K ++ K
Sbjct: 306 ALAKVDKSGMK---SIDAFFGAKNKKTGK 331
Score = 36.7 bits (84), Expect = 0.027
Identities = 10/71 (14%), Positives = 20/71 (28%)
Query: 913 KKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKK 972
K+ ++ ++ + + K+ + E K K K KK K
Sbjct: 242 PKELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMT 301
Query: 973 KKEAEKMKKKT 983
+ K
Sbjct: 302 AAQKALAKVDK 312
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 49.8 bits (118), Expect = 3e-06
Identities = 13/97 (13%), Positives = 43/97 (44%)
Query: 892 FILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKI 951
+ + RT + + + + +K+ A + ++MKK+ ++ ++++++ A++
Sbjct: 269 LDFYFRSRTPVELARRGNTLLQCLEKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQT 328
Query: 952 GKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+K+ + KK K + E++ + +
Sbjct: 329 ANEKENVDGVESKKAKIEDTSNVGTEQLVAEKIPENE 365
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 46.6 bits (110), Expect = 5e-06
Identities = 23/108 (21%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Query: 894 LFRKKRTRRKKK--KGAEKIRKKKKKKKEAEKMRKK----------KGAEKMKKK---KK 938
LF++++ R+ K KK ++ A+K +K + +K++ K
Sbjct: 39 LFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKAQRPITGASLDLIKERRSLKP 98
Query: 939 DAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
+ K ++ K K+KKK +K +K +K K + ++ K++ + A
Sbjct: 99 EVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGA 146
Score = 42.8 bits (100), Expect = 9e-05
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 895 FRKKRTRRKKK-------KGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKG 947
KKR+R+ K + I++++ K E K +++ + K+KKK + +K
Sbjct: 67 VAKKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAE 126
Query: 948 AEKIGKKKKKKKKKKKKKKKKKKKKKK 974
K + K K++ K +K
Sbjct: 127 KAKSAGTQSSKFSKQQAKGAFQKVAAT 153
Score = 40.9 bits (95), Expect = 4e-04
Identities = 15/83 (18%), Positives = 34/83 (40%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
R ++T + ++ K+++ + +K E+ K K+ +K +K + K
Sbjct: 71 RSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKS 130
Query: 956 KKKKKKKKKKKKKKKKKKKEAEK 978
+ K K++ K +K A
Sbjct: 131 AGTQSSKFSKQQAKGAFQKVAAT 153
Score = 36.2 bits (83), Expect = 0.018
Identities = 14/66 (21%), Positives = 28/66 (42%)
Query: 885 EAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMK 944
+ + + ++ R++K A K +KK +K + K G + K K+ A+
Sbjct: 88 DLIKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAF 147
Query: 945 KKGAEK 950
+K A
Sbjct: 148 QKVAAT 153
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 47.7 bits (112), Expect = 6e-06
Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
K K++ E I++ ++ KM K+K A+KM+ K++ E E++ +K
Sbjct: 65 LLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKD 124
Query: 956 KKKKKKKKKKKKKKKKKKKE-AEKMKKKTEEAEK 988
K ++ +++ ++ K EK+ +K E ++
Sbjct: 125 KHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKE 158
Score = 45.0 bits (105), Expect = 6e-05
Identities = 21/113 (18%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 880 DDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKK-----KKKKKEAEKMRKKKGAEKMK 934
++VR+ A+ + K +K + ++ RK K E + ++ ++
Sbjct: 128 EEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIE 187
Query: 935 KKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
+ + K+K A+K+ K+ ++ ++ ++K K AE+++K E E
Sbjct: 188 ENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRKNKELKE 240
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 46.4 bits (109), Expect = 2e-05
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 921 AEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMK 980
A + K EK+ K++ E + KK+K +K K + K AE+
Sbjct: 2 ASEAAKVAVPEKVILKRRREEVWAAE-------KKQKVAAEKIKAAENTKVIYARAEQYA 54
Query: 981 KKTEEAEK 988
+ E +K
Sbjct: 55 GEYEAQDK 62
Score = 44.4 bits (104), Expect = 8e-05
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 903 KKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKK 962
K EK+ K++++E KK+ K K + K+ AE+ + + + K+
Sbjct: 6 AKVAVPEKV-ILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKEL 64
Query: 963 KKKKKKKKKKKKEAEKMKKK 982
+ K++ + K + K
Sbjct: 65 VQLKREARMKGGFYVSPEAK 84
Score = 38.7 bits (89), Expect = 0.006
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKK 961
K+++ +KK+K K K AE K AE+ + + + + K++
Sbjct: 16 LKRRREEVWAAEKKQKVAA----EKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREA 71
Query: 962 KKKKKKKKKKKKK 974
+ K + K
Sbjct: 72 RMKGGFYVSPEAK 84
Score = 35.6 bits (81), Expect = 0.060
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 895 FRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKK 954
+K+K AEKI+ + K + AE+ + + +K E + K
Sbjct: 21 EEVWAAEKKQKVAAEKIKAAENTKVIYAR------AEQYAGEYEAQDK------ELVQLK 68
Query: 955 KKKKKKKKKKKKKKKK 970
++ + K + K
Sbjct: 69 REARMKGGFYVSPEAK 84
Score = 29.0 bits (64), Expect = 7.5
Identities = 8/84 (9%), Positives = 25/84 (29%)
Query: 883 RREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEK 942
R E A ++ + + R ++ + + ++ ++ + K
Sbjct: 20 REEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYV 79
Query: 943 MKKKGAEKIGKKKKKKKKKKKKKK 966
+ + + + K KK
Sbjct: 80 SPEAKPLFVVRIRGINAMHPKTKK 103
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 46.3 bits (109), Expect = 2e-05
Identities = 13/69 (18%), Positives = 27/69 (39%)
Query: 914 KKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKK 973
KK + E + K + + + K + A+K + + +KK +K+K +K
Sbjct: 11 KKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTG 70
Query: 974 KEAEKMKKK 982
+ K
Sbjct: 71 AFYVPAEAK 79
Score = 44.8 bits (105), Expect = 6e-05
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 926 KKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKK 982
K E ++KK EK++K AE+ + K++K + K +K E E +KK
Sbjct: 2 SKFVPENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKK 58
Score = 44.0 bits (103), Expect = 1e-04
Identities = 13/69 (18%), Positives = 33/69 (47%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKK 961
+K + + + K +++K + K++ AE + K +K A + + + + +K+K +K
Sbjct: 11 KKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTG 70
Query: 962 KKKKKKKKK 970
+ K
Sbjct: 71 AFYVPAEAK 79
Score = 39.4 bits (91), Expect = 0.003
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 934 KKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKT 983
KK +D + K K ++ + K++K + K +K + KK
Sbjct: 11 KKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIV 60
Score = 36.7 bits (84), Expect = 0.023
Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 925 RKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTE 984
+K EK++K K +++ A K++K + K +K + + E + + +K +
Sbjct: 11 KKLARDEKLRKAKA-----EQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRK 65
Query: 985 E 985
Sbjct: 66 A 66
Score = 35.5 bits (81), Expect = 0.062
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 943 MKKKGAEKIGKKKKKK-KKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
M K E + KK + K +K K +++K + ++ + +A+K
Sbjct: 1 MSKFVPENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQK 47
Score = 33.2 bits (75), Expect = 0.30
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 936 KKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKE-----AEKMKKKTEEAEK 988
K E ++KK +K +K K +++K + K++K A+K + E AEK
Sbjct: 2 SKFVPENVQKK--LARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEK 57
Score = 29.4 bits (65), Expect = 5.2
Identities = 8/84 (9%), Positives = 25/84 (29%)
Query: 883 RREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEK 942
R E + + + K++K + +K + +K ++ +K
Sbjct: 15 RDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGAFYV 74
Query: 943 MKKKGAEKIGKKKKKKKKKKKKKK 966
+ + + + K+
Sbjct: 75 PAEAKVAFAIRIRGVNQLHPDVKR 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 47.6 bits (113), Expect = 3e-05
Identities = 14/83 (16%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 906 KGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKK 965
+ +K+ + E E++ G +K++ + + ++ A+K ++ K ++ +K
Sbjct: 1902 NQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKN-RELDVKNEQANQK 1960
Query: 966 KKKKKKKKKEAEKMKKKTEEAEK 988
K+ + ++ AE +K E +
Sbjct: 1961 LKQMVQDQQAAEIKQKDARELQV 1983
Score = 46.0 bits (109), Expect = 7e-05
Identities = 23/135 (17%), Positives = 55/135 (40%), Gaps = 23/135 (17%)
Query: 872 HVAVSDVNDD-----VRREAVTA---LGFI-----LFRKKRT-----RRKKKKGAEKIRK 913
H + + N R+ VT L FI L +KR + G +K+R
Sbjct: 1872 HQTIGEANIRLLKRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRD 1931
Query: 914 KKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKK 973
+ + K+ + +K E K ++ +K+K ++ + ++ + K+K ++ + +
Sbjct: 1932 TEAQVKDLQVSLAQKNRELDVKNEQANQKLK-----QMVQDQQAAEIKQKDARELQVQLD 1986
Query: 974 KEAEKMKKKTEEAEK 988
+++ + +A
Sbjct: 1987 VRNKEIAVQKVKAYA 2001
Score = 41.8 bits (98), Expect = 0.001
Identities = 19/111 (17%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 885 EAVTALGFILFRKKRTRRKKKKGAEKIRKK--------KKKKKEAEKMRKK--KGAEKMK 934
V L L +K R K + A + K+ + K+K+A +++ + +++
Sbjct: 1934 AQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIA 1993
Query: 935 KKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
+K A +K AE G +++ ++ + + K K+ + + +
Sbjct: 1994 VQKVKAYADLEK-AEPTGPLREEVEQLENAANELKLKQDEIVATITALEKS 2043
Score = 39.9 bits (93), Expect = 0.006
Identities = 13/105 (12%), Positives = 39/105 (37%), Gaps = 11/105 (10%)
Query: 895 FRKKRTRRKKKKGAEKIRKKKKKKKEAEK-------MRKKKGAEKMKKKKKDAEKMKKKG 947
++K R + + + ++ +K +A + + + + K+K+
Sbjct: 1973 IKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDE 2032
Query: 948 AEKIGKKKKKK----KKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+K K++ ++ ++ K E+ K+K K + +
Sbjct: 2033 IVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIA 2077
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 44.8 bits (105), Expect = 5e-05
Identities = 16/92 (17%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKK--------KGAEKIGK 953
+ K+ +E K KKK EA+++ + + + K E++KK + + I
Sbjct: 126 KALKESSESNIKDIKKKLEAKRLDRIQVMMRSTSDKAAQERLKKEINNSHIQEVVQTIKL 185
Query: 954 KKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
+K + ++K ++K+ + + ++ + + ++
Sbjct: 186 LTEKTARYQQKLEEKQAENLRAIQEKEGQLQQ 217
Score = 37.9 bits (87), Expect = 0.010
Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
+++ G E +++K++ + K E ++K+ K K+ +E K
Sbjct: 80 KERLEMELIHLGEEYHDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDI 139
Query: 956 KKKKKKKK----KKKKKKKKKKKEAEKMKKKTEE 985
KKK + K+ + + K E++KK+
Sbjct: 140 KKKLEAKRLDRIQVMMRSTSDKAAQERLKKEINN 173
Score = 34.4 bits (78), Expect = 0.13
Identities = 11/92 (11%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 898 KRTRRKKKKGAEKIRKKKKKKKEAEKMRKK-KGAEKMKKKKKDAEKMKKKGAEKIGKKKK 956
+ +K++K +++ +K K++E + E + + D++ ++ K ++
Sbjct: 31 LKLLKKQEKELKELERKGSKRREELLQKYSVLFLEPVYPRGLDSQVVELKERLEMELIHL 90
Query: 957 KKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
++ +++K++ ++ K+ + E +
Sbjct: 91 GEEYHDGIRRRKEQHATEQTAKITELAREKQI 122
Score = 34.4 bits (78), Expect = 0.14
Identities = 10/108 (9%), Positives = 43/108 (39%)
Query: 880 DDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKD 939
+ R + + + K R KK+ ++ + + + + +K+++K+ +
Sbjct: 144 EAKRLDRIQVMMRSTSDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAE 203
Query: 940 AEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
+ ++ ++ ++ + ++K K + ++ + + + E
Sbjct: 204 NLRAIQEKEGQLQQEAVAEYEEKLKTLTVEVQEMVKNYMKEVFPDGPE 251
Score = 33.2 bits (75), Expect = 0.33
Identities = 14/97 (14%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAE----KMKKKKKDAEKMKKKGAEKI 951
+ K++ ++ ++ + + RK++ A K+ + ++ + + K A K
Sbjct: 72 LDSQVVELKERLEMELIHLGEEYHDGIRRRKEQHATEQTAKITELAREKQIAELK-ALKE 130
Query: 952 GKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ K KKK + K+ + + K +
Sbjct: 131 SSESNIKDIKKKLEAKRLDRIQVMMRSTSDKAAQERL 167
Score = 32.1 bits (72), Expect = 0.69
Identities = 10/76 (13%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 916 KKKKEAEKMRKK--KGAEKMKKK-KKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKK 972
++ K K+ KK K +++++K K E++ +K + + + + + K++ +
Sbjct: 25 QQMKLFLKLLKKQEKELKELERKGSKRREELLQKYSVLFLEPVYPRGLDSQVVELKERLE 84
Query: 973 KKEAEKMKKKTEEAEK 988
+ ++ + +
Sbjct: 85 MELIHLGEEYHDGIRR 100
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 44.4 bits (104), Expect = 7e-05
Identities = 9/69 (13%), Positives = 23/69 (33%)
Query: 914 KKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKK 973
KK K ++ + K K+ + + K+ + ++ + K+ K
Sbjct: 14 KKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAG 73
Query: 974 KEAEKMKKK 982
+ + K
Sbjct: 74 SYYVEAQHK 82
Score = 43.7 bits (102), Expect = 1e-04
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 931 EKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
E KK K +K ++ ++ +K K+K+ + +K+ E AE+
Sbjct: 10 ESQLKKSKAQQKTAEQ-------VAAERAARKAANKEKRAIILERNAAYQKEYETAER 60
Score = 41.0 bits (95), Expect = 0.001
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 903 KKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKK 962
KK K +K ++ ++ RK EK + +K+ + K+ K
Sbjct: 14 KKSKAQQKTAEQVAAER---AARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAK 70
Query: 963 KKKKKKKKKKKK 974
+ + K
Sbjct: 71 AAGSYYVEAQHK 82
Score = 37.1 bits (85), Expect = 0.017
Identities = 11/78 (14%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 893 ILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIG 952
+K + ++K + R +K + ++ + +K+ + AE+ I
Sbjct: 11 SQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAER------NIIQ 64
Query: 953 KKKKKKKKKKKKKKKKKK 970
K+ K + + K
Sbjct: 65 AKRDAKAAGSYYVEAQHK 82
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 44.7 bits (105), Expect = 1e-04
Identities = 20/96 (20%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 893 ILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIG 952
+ R + ++ G + K E K+ + +KK+ E M++ +++
Sbjct: 293 RHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEE-MRQMFVQRVK 351
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+K+ + K+ +K+ +K + KK + KKK E+ +K
Sbjct: 352 EKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKK 387
Score = 38.2 bits (88), Expect = 0.011
Identities = 15/78 (19%), Positives = 34/78 (43%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
R K + K+ +++ +K + K+ + KKK +K K + K++ +
Sbjct: 349 RVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQS 408
Query: 956 KKKKKKKKKKKKKKKKKK 973
+ + + K+ K+KK
Sbjct: 409 QGSQAGGSQTLKRDKEKK 426
Score = 34.3 bits (78), Expect = 0.20
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 8/127 (6%)
Query: 867 TKRLLHVAVSDVNDDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRK 926
+L + D + D + ++ + +KK E+ ++ ++ EK +
Sbjct: 300 RCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKK---EEEMRQMFVQRVKEKEAE 356
Query: 927 KKGAE-----KMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
K AE K + KK + KKK +K + K++K + + + ++
Sbjct: 357 LKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGS 416
Query: 982 KTEEAEK 988
+T + +K
Sbjct: 417 QTLKRDK 423
Score = 34.0 bits (77), Expect = 0.24
Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
R+ +R K+K AE +K+ ++ ++++K EK KK +K K E K+
Sbjct: 343 RQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEK----KKLEDKKKSLDDEVNAFKQ 398
Query: 956 KKKKKKKKKKKKKKKKKKKEAEKMKKK 982
+K + + + + + ++ K+K
Sbjct: 399 RKTAAELLQSQGSQAGGSQTLKRDKEK 425
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 44.5 bits (104), Expect = 1e-04
Identities = 16/86 (18%), Positives = 30/86 (34%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKK 961
+ K ++ K+K K + K +K + + A K K+ K
Sbjct: 308 KPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTKLS 367
Query: 962 KKKKKKKKKKKKKEAEKMKKKTEEAE 987
++ K K K + M ++ AE
Sbjct: 368 PEEAAKVKAAGKAWYKTMISDSDYAE 393
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 44.7 bits (106), Expect = 2e-04
Identities = 12/95 (12%), Positives = 33/95 (34%)
Query: 894 LFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGK 953
KK + K + ++ + ++ K++ + EK +
Sbjct: 801 KEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQ 860
Query: 954 KKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ + + + K++KK ++ ++ KK E
Sbjct: 861 EHAEALRIELKRQKKIAVLLQKYNRILKKLENWAT 895
Score = 42.3 bits (100), Expect = 8e-04
Identities = 12/103 (11%), Positives = 33/103 (32%), Gaps = 5/103 (4%)
Query: 891 GFILFRKKRTRRKKKKGAEKIRK---KKKKKKEAEKMRKKKGAEKMKK--KKKDAEKMKK 945
+ R E ++ K+ K+ EK K + +++ +
Sbjct: 773 WINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLI 832
Query: 946 KGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K + + +K +++ AE ++ + + +K
Sbjct: 833 KREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKK 875
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 44.0 bits (103), Expect = 2e-04
Identities = 12/117 (10%), Positives = 46/117 (39%), Gaps = 8/117 (6%)
Query: 871 LHVAVSDVNDDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGA 930
L ++ D+ ++ L ++ +++ R+ + ++++++ K + + K
Sbjct: 87 LLRQHAE---DLNSGPLSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQY 143
Query: 931 EKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKK-----KEAEKMKKK 982
+ + A++ ++ ++ + K K K + K + + A+ +
Sbjct: 144 RALARDSAQAKRKYQEASKDKDRDKAKDKYVRSLWKLFAHHNRYVLGVRAAQLHHQH 200
Score = 40.2 bits (93), Expect = 0.003
Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 911 IRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKK------KGAEKIGKKKKKKKKKKKK 964
IR++++ +K + ++ E K +D EK+K + + + +K ++ K K +
Sbjct: 107 IRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKDKDR 166
Query: 965 KKKKKKKKKKEAEKMKKKTE 984
K K K + +
Sbjct: 167 DKAKDKYVRSLWKLFAHHNR 186
Score = 38.2 bits (88), Expect = 0.012
Identities = 11/63 (17%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 930 AEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKK----KKEAEKMKKKTEE 985
K+ ++ ++++K +E+ + +++ K + +K K + +++ + K+K +E
Sbjct: 100 LSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQE 159
Query: 986 AEK 988
A K
Sbjct: 160 ASK 162
Score = 32.5 bits (73), Expect = 0.71
Identities = 7/53 (13%), Positives = 22/53 (41%)
Query: 936 KKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K+ E+ +K ++ ++ +++ K ++ EK+K + +
Sbjct: 96 NSGPLSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALAR 148
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule,
tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus
norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E*
1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E*
3n2g_E* 3n2k_E*
Length = 143
Score = 41.6 bits (97), Expect = 2e-04
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
R++ E+I +KK + AE+ RK + AE +K + E ++ + I +
Sbjct: 33 FNASLPRRRDPSLEEI---QKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENN 89
Query: 956 KKKKKKKKKKKKK--KKKKKKEA------EKMKKKTEEAEK 988
K K+K +K K+ +EA E++++K + AE+
Sbjct: 90 NFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEE 130
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 42.7 bits (100), Expect = 3e-04
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 909 EKIRKK-KKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKK 967
+ I+KK + K + E + A++ + KK AE K+ +++ +KK K + + K
Sbjct: 2 DAIKKKMQMLKLDKENALDR--ADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDK 59
Query: 968 KKKKKKKEAEKMKKKTEEAEK 988
+ K EK++ ++A
Sbjct: 60 YSEALKDAQEKLELAEKKATD 80
Score = 38.9 bits (90), Expect = 0.006
Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
+ T +K + AEK + ++ + + R +K EKM+ ++ ++ K AE +K
Sbjct: 104 ERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHI-AEDADRKY 162
Query: 956 KKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
++ +K + ++ ++ AE + K E E+
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGKCAELEE 195
Score = 38.5 bits (89), Expect = 0.007
Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 901 RRKKKKGAEKIRKKKKKKKEAEKMRKKKGAE--KMKKKKKDAEKMKKKGAEKIGKKKKKK 958
+ K+ ++ + + KK AE K+ E ++KK K E K +E + ++K
Sbjct: 12 KLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKL 71
Query: 959 KKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ +KK + +++ EE ++
Sbjct: 72 ELAEKKATDAEADVASLNRRIQLFEEELDR 101
Score = 31.2 bits (70), Expect = 1.5
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 933 MKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
M KK + +K E + + + KK + + K+ + E ++KK + E
Sbjct: 1 MDAIKKKMQMLKLD-KENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATED 55
Score = 30.0 bits (67), Expect = 4.1
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 12/86 (13%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
+ ++ +K+ K E+I+ K KEAE + + AE+ K + I +
Sbjct: 210 QAEKYSQKEDKYEEEIKVLSDKLKEAE------------TRAEFAERSVTKLEKSIDDLE 257
Query: 956 KKKKKKKKKKKKKKKKKKKEAEKMKK 981
+ +K K K ++ M
Sbjct: 258 DELYAQKLKYKAISEELDHALNDMTS 283
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 42.5 bits (99), Expect = 3e-04
Identities = 16/99 (16%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEK-MRKKKGAEKMKKKKKDAEKMK----KKGAEK 950
++ + +K+ E+ K++K+ EA + +R+ + + ++ +D + A +
Sbjct: 106 KRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQ--LQYVQRSEDLRARSQGSPEDSAPQ 163
Query: 951 IGKKKKKKKKKKKKKKKKKKKKKKEAEKM-KKKTEEAEK 988
K+++++++ +++ + K +EAE + + EA
Sbjct: 164 ASPGPSKQQERRRRSREEAQAKAQEAEALYQACVREANA 202
Score = 40.6 bits (94), Expect = 0.002
Identities = 13/90 (14%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 902 RKKKKGAEKIRKKKK---KKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKK 958
K+ EK RK+ K K++ + + + + + + ++ + +
Sbjct: 104 AAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQ 163
Query: 959 KKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K+++++++ E+ + K +EAE
Sbjct: 164 ASPGPSKQQERRRRS--REEAQAKAQEAEA 191
Score = 36.7 bits (84), Expect = 0.026
Identities = 9/89 (10%), Positives = 37/89 (41%)
Query: 898 KRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKK 957
+ +++ + + +R+ + + + + + + + A K E+ + +++
Sbjct: 122 MKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREE 181
Query: 958 KKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
+ K ++ + + +EA ++ E A
Sbjct: 182 AQAKAQEAEALYQACVREANARQQDLEIA 210
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 41.8 bits (97), Expect = 4e-04
Identities = 12/66 (18%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 915 KKKKKEAEKMRK--KKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKK 972
+ +E E +RK ++ +++++ ++ M+++ EK K ++ +++ ++ +K K
Sbjct: 93 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 152
Query: 973 KKEAEK 978
+ A+K
Sbjct: 153 NRIADK 158
Score = 39.1 bits (90), Expect = 0.003
Identities = 9/67 (13%), Positives = 31/67 (46%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKK 968
E IRK ++++++ + ++ ++ A+K ++ ++ ++ +K K + K
Sbjct: 100 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 159
Query: 969 KKKKKKE 975
++
Sbjct: 160 FYQQPDA 166
Score = 31.8 bits (71), Expect = 0.87
Identities = 9/53 (16%), Positives = 27/53 (50%)
Query: 933 MKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
+ ++ E ++K E+ + ++ K +++ ++K KK+ E+ ++ E
Sbjct: 92 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE 144
Score = 30.7 bits (68), Expect = 1.8
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 12/69 (17%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
RK R ++K+ E K ++E +K KKD E+ ++ +E++ K K
Sbjct: 103 RKWR-EEQRKRLQELDAASKVMEQEW-----------REKAKKDLEEWNQRQSEQVEKNK 150
Query: 956 KKKKKKKKK 964
+ K
Sbjct: 151 INNRIADKA 159
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 42.5 bits (99), Expect = 4e-04
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 925 RKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMK 980
R + + ++K K+ + KK K ++KKKK+ K K K++ +K
Sbjct: 59 RPQNPRPRPPPRQK-----KQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALK 109
Score = 41.3 bits (96), Expect = 8e-04
Identities = 13/82 (15%), Positives = 32/82 (39%)
Query: 899 RTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKK 958
R RR+ + + ++ + + + + ++ + + K K
Sbjct: 24 RRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPK 83
Query: 959 KKKKKKKKKKKKKKKKEAEKMK 980
K K ++KKKK+ K K ++ +
Sbjct: 84 KPKPQEKKKKQPAKTKPGKRQR 105
Score = 38.3 bits (88), Expect = 0.008
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 938 KDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKK 982
A + + ++KK+ K+ K KK K ++KK+ + K K
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTK 99
Score = 37.9 bits (87), Expect = 0.011
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 919 KEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEK 978
+A + + + ++KK+ ++ K K +KKKK+ K K K+++ K EA++
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
Score = 37.1 bits (85), Expect = 0.019
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 952 GKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
++KK+ K+ K KK K +E +K + + K
Sbjct: 66 RPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGK 102
Score = 35.9 bits (82), Expect = 0.041
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 952 GKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
+ ++KK+ K+ K KK K EK KK+ + +
Sbjct: 64 RPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTK 99
Score = 35.9 bits (82), Expect = 0.050
Identities = 9/73 (12%), Positives = 27/73 (36%)
Query: 910 KIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKK 969
+ + + + ++ + + + ++KK+ K+ K KK
Sbjct: 26 RRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKP 85
Query: 970 KKKKKEAEKMKKK 982
K ++K+ ++ K
Sbjct: 86 KPQEKKKKQPAKT 98
Score = 35.6 bits (81), Expect = 0.062
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
++KK+ K+ K KK K +++ +K KT+ ++
Sbjct: 68 PPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKR 103
Score = 34.8 bits (79), Expect = 0.11
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ + ++KK+ K+ K KK + KKK + A+
Sbjct: 63 PRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKT 98
Score = 34.0 bits (77), Expect = 0.16
Identities = 11/74 (14%), Positives = 34/74 (45%)
Query: 915 KKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKK 974
+++++ A + A ++++ + A + + + ++KK+ K+ K K
Sbjct: 24 RRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPK 83
Query: 975 EAEKMKKKTEEAEK 988
+ + +KK ++ K
Sbjct: 84 KPKPQEKKKKQPAK 97
Score = 34.0 bits (77), Expect = 0.19
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 943 MKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ + + + + ++KK+ K+ K KK + ++ KKK K
Sbjct: 54 IGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTK 99
Score = 29.8 bits (66), Expect = 3.6
Identities = 8/47 (17%), Positives = 24/47 (51%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEK 942
++ ++ K+ + + K ++KK+ + + K G + K +A++
Sbjct: 68 PPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease,
SH3-binding, thiol protease, UBL conjugation pathway,
structural genomics; 2.10A {Homo sapiens} SCOP:
a.118.23.1
Length = 144
Score = 40.5 bits (94), Expect = 5e-04
Identities = 19/117 (16%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 864 NVATKRLLHVAVSDVN--DDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEA 921
++TK +H A+ ++ R + ++L+ K T I+K+ K++
Sbjct: 32 KISTKSYVHSALKIFKTAEECRLDRDEERAYVLYMKYVTV------YNLIKKRPDFKQQQ 85
Query: 922 EKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEK 978
+ G +KK ++AE++ + + + + +KK ++K ++++ ++ +++ ++
Sbjct: 86 DYFHSILGPGNIKKAVEEAERLSESLKLRYEEAEVRKKLEEKDRQEEAQRLQQKRQE 142
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 38.5 bits (89), Expect = 0.001
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 921 AEKMRKKKGAEKMKKKKKDA----EKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEA 976
A + K + + + KKD E K +K K+ +++ K +K K +K
Sbjct: 30 AMIITKSSKGDFLIRTKKDGKQVWEAASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATE 89
Query: 977 EKMKKKTEEAEK 988
+K EEA+K
Sbjct: 90 VGVKAALEEAKK 101
Score = 37.7 bits (87), Expect = 0.003
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 907 GAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKK 966
+ K + KK+ +++ + +KK K E+ K K K +K +
Sbjct: 35 KSSKGDFLIRTKKDGKQVWEAASKTALKKSWKRYEQEMLKNE-----KVAAKMLEKDATE 89
Query: 967 KKKKKKKKEAEKMK 980
K +EA+K++
Sbjct: 90 VGVKAALEEAKKVQ 103
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription
regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo
sapiens}
Length = 214
Score = 40.1 bits (93), Expect = 0.001
Identities = 13/94 (13%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 891 GFILFRKKRTRRKKKKG------AEKIRKKKKKKKEAEKMRKKKGAEKMKKK-KKDAEKM 943
+ ++ +R ++ KG + +++ K ++EK + A++ + + + +
Sbjct: 121 AYNVYVAER--FQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 178
Query: 944 KKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAE 977
+++ E +G+K ++ KK++K ++ +
Sbjct: 179 EEQMIE-VGRKDLLRRTIKKQRKYGAEECLQHHH 211
Score = 29.3 bits (65), Expect = 4.5
Identities = 10/80 (12%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKK 968
+ ++ K EK++ ++ K D+EK + K+ + + + K ++
Sbjct: 127 AERFQEAKGDSPQEKLKT---VKENWKNLSDSEKEL---YIQHAKEDETRYHNEMKSWEE 180
Query: 969 KKKKKKEAEKMKKKTEEAEK 988
+ + + +++ ++ K
Sbjct: 181 QMIEVGRKDLLRRTIKKQRK 200
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin
sulphate A, membrane protein DBL, malaria; 3.00A
{Plasmodium falciparum}
Length = 302
Score = 40.6 bits (95), Expect = 0.002
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 9/77 (11%)
Query: 915 KKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGA-----EKIGKKKKK----KKKKKKKK 965
K+ + E M + K +K + A I KKK+ +
Sbjct: 189 TKRNELYENMVTACNSAKCNTSNGSVDKKECTEACKNYSNFILIKKKEYQSLNSQYDMNY 248
Query: 966 KKKKKKKKKEAEKMKKK 982
K+ K +KK+ E K K
Sbjct: 249 KETKAEKKESPEYFKDK 265
Score = 39.8 bits (93), Expect = 0.003
Identities = 12/97 (12%), Positives = 27/97 (27%), Gaps = 10/97 (10%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGA----------EKMKKKKKDAEKMKKKGAEKI 951
K+ + E + K + KKK+ + + +
Sbjct: 189 TKRNELYENMVTACNSAKCNTSNGSVDKKECTEACKNYSNFILIKKKEYQSLNSQYDMNY 248
Query: 952 GKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ K +KK+ + K K + + K +
Sbjct: 249 KETKAEKKESPEYFKDKCNGECSCLSEYFKDETRWKN 285
Score = 36.7 bits (85), Expect = 0.027
Identities = 11/68 (16%), Positives = 21/68 (30%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKK 961
KKK + + + + K KK+ E K K + + + K +
Sbjct: 231 LIKKKEYQSLNSQYDMNYKETKAEKKESPEYFKDKCNGECSCLSEYFKDETRWKNPYETL 290
Query: 962 KKKKKKKK 969
+ K
Sbjct: 291 DDTEVKNN 298
Score = 34.0 bits (78), Expect = 0.20
Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 8/100 (8%)
Query: 897 KKRTRRKKKKGAEKIRKKKKKKKEAEKM-----RKKKGAEKMKKK---KKDAEKMKKKGA 948
K + KK+ + + KKK + + + K +KK +
Sbjct: 199 VTACNSAKCNTSNGSVDKKECTEACKNYSNFILIKKKEYQSLNSQYDMNYKETKAEKKES 258
Query: 949 EKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ K K + + K + + K + TE
Sbjct: 259 PEYFKDKCNGECSCLSEYFKDETRWKNPYETLDDTEVKNN 298
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 40.6 bits (95), Expect = 0.002
Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 918 KKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAE 977
K + +++ ++ ++KK M ++ AE+ K K + + K+++K
Sbjct: 267 KTQLAVCQQRI-RRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNT 325
Query: 978 KMKKKTEEAE 987
+ E E
Sbjct: 326 AGSQSQVETE 335
Score = 38.0 bits (88), Expect = 0.014
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 905 KKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKK 964
K +++ +++ EK K M ++ + E K A + K+++K
Sbjct: 267 KTQLAVCQQRIRRQLAREK----KLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQK 322
Query: 965 KKKKKKKKKKEAE 977
+ + E E
Sbjct: 323 SNTAGSQSQVETE 335
Score = 32.2 bits (73), Expect = 0.76
Identities = 10/82 (12%), Positives = 27/82 (32%), Gaps = 5/82 (6%)
Query: 910 KIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKK---KK 966
+ + A +K ++ K A+ ++I ++ ++KK +
Sbjct: 238 EAHLAVNDFELARADFQK--VLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295
Query: 967 KKKKKKKKEAEKMKKKTEEAEK 988
+++ K K + E
Sbjct: 296 AEEENKAKAEASSGDHPTDTEM 317
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group,
transcription, LSP1, mitochon transcription-DNA complex;
HET: DNA; 2.50A {Homo sapiens}
Length = 238
Score = 39.4 bits (91), Expect = 0.003
Identities = 13/86 (15%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 891 GFILFRKKRTRRKKKKGAEKIRKKKKKK----KEAEKMRKKKGAEKMKKK-KKDAEKMKK 945
+ ++ +R + K ++ K K+ ++EK + A++ + + + + ++
Sbjct: 153 AYNVYVAERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 212
Query: 946 KGAEKIGKKKKKKKKKKKKKKKKKKK 971
+ E +G+K ++ KK++K ++
Sbjct: 213 QMIE-VGRKDLLRRTIKKQRKYGAEE 237
Score = 29.0 bits (64), Expect = 6.1
Identities = 2/34 (5%), Positives = 6/34 (17%)
Query: 941 EKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKK 974
+ ++ + KK
Sbjct: 11 SSGLVPRGSHMASMTGGQQMGRGSSSVLASCPKK 44
Score = 28.6 bits (63), Expect = 9.2
Identities = 8/74 (10%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 918 KKEAEKMRKKKGAEKMKKKKKDAEKM---KKKGAEKIGKKKKKKKKKKKKKKKKKKKKKK 974
+ ++ + EK+K K++ + + +K+ + K+ + + + K +++ +
Sbjct: 159 AERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVG 218
Query: 975 EAEKMKKKTEEAEK 988
+ +++ ++ K
Sbjct: 219 RKDLLRRTIKKQRK 232
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 39.5 bits (92), Expect = 0.004
Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 2/106 (1%)
Query: 885 EAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKK--EAEKMRKKKGAEKMKKKKKDAEK 942
EA+ L K R + KKK+ E+ R + +E +
Sbjct: 90 EAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAA 149
Query: 943 MKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+++ E+ + + + + ++ + K + M E +
Sbjct: 150 ERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQ 195
Score = 33.0 bits (75), Expect = 0.39
Identities = 6/59 (10%), Positives = 22/59 (37%)
Query: 930 AEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ + +A ++ +++ + KKK+ + + ++ +E+E
Sbjct: 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESEL 139
>3rrc_A Duffy receptor; duffy binding like, receptor recognition, duffy
antigen RECE chemokines, cell invasion; HET: EDO; 1.95A
{Plasmodium vivax} PDB: 2c6j_A
Length = 317
Score = 39.5 bits (92), Expect = 0.004
Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 915 KKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGA-----EKIGKKKKKKKKKKKKKKKKK 969
+ E +K+++K + KK + + A + I +KK + K K
Sbjct: 194 SELPTEVQKLKEKCDGKINYTDKKVCKVPPCQNACKSYDQWITRKKNQWDVLSNKFISVK 253
Query: 970 KKKKKEAEKMKKKTE 984
+K + + +
Sbjct: 254 NAEKVQTAGIVTPYD 268
Score = 37.6 bits (87), Expect = 0.014
Identities = 11/99 (11%), Positives = 31/99 (31%), Gaps = 12/99 (12%)
Query: 902 RKKKKGAEKIRKK-----KKKKKEAEKMRKKKGA-----EKMKKKKKDAEKMKKKGAEKI 951
+ +K+++K K+ K+ + A + + +KK + + K
Sbjct: 194 SELPTEVQKLKEKCDGKINYTDKKVCKVPPCQNACKSYDQWITRKKNQWDVLSNKFISVK 253
Query: 952 GKKKKKKKKKKKKKK--KKKKKKKKEAEKMKKKTEEAEK 988
+K + K++ + E + +
Sbjct: 254 NAEKVQTAGIVTPYDILKQELDEFNEVAFENEINKRDGA 292
Score = 35.2 bits (81), Expect = 0.091
Identities = 12/78 (15%), Positives = 27/78 (34%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKK 961
+KK + + K K AEK++ K++ ++ + E K+ +
Sbjct: 236 TRKKNQWDVLSNKFISVKNAEKVQTAGIVTPYDILKQELDEFNEVAFENEINKRDGAYIE 295
Query: 962 KKKKKKKKKKKKKEAEKM 979
++ KK +
Sbjct: 296 LCVCSVEEAKKNTQEVVT 313
Score = 32.2 bits (73), Expect = 0.82
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 11/103 (10%)
Query: 897 KKRTRRKKKKGAEKIRKKKKKKKEAEK-----MRKKKGAEKMKKK-KKDAEKMKKKG--- 947
K++ K +K+ K + + RKK + + K K +
Sbjct: 204 KEKCDGKINYTDKKVCKVPPCQNACKSYDQWITRKKNQWDVLSNKFISVKNAEKVQTAGI 263
Query: 948 --AEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
I K++ + + + + K+ E EEA+K
Sbjct: 264 VTPYDILKQELDEFNEVAFENEINKRDGAYIELCVCSVEEAKK 306
>3biy_A Histone acetyltransferase P300; P300 HAT, bisubstrate inhibitor,
protein-inhibitor complex; HET: 01K; 1.70A {Homo
sapiens}
Length = 380
Score = 39.8 bits (92), Expect = 0.004
Identities = 14/69 (20%), Positives = 26/69 (37%)
Query: 919 KEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEK 978
E+ K+ E+ ++K+++ + K K KKK KK K K + +K
Sbjct: 225 NVLEESIKELEQEEEERKREENTSNESTDVTKGDSKNAKKKNNKKTSKNKSSLSRGNKKK 284
Query: 979 MKKKTEEAE 987
+
Sbjct: 285 PGMPNVSND 293
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 39.4 bits (91), Expect = 0.004
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 10/106 (9%)
Query: 893 ILFRKKRTRRKKKKGAEKIRK----------KKKKKKEAEKMRKKKGAEKMKKKKKDAEK 942
I +K K+ G K K K KK E KK K++K A
Sbjct: 119 IKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAIS 178
Query: 943 MKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ ++ KK + K +K K+ K EK +K +E ++
Sbjct: 179 REANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQ 224
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane
targeting, GTPase, GAP, longin domain, SEDL, transport
protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4
PDB: 2go5_1
Length = 185
Score = 38.2 bits (88), Expect = 0.005
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 919 KEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEA 976
+EAE+ K + MKK + D+EK KK I + +K K+K K KKK KKE
Sbjct: 131 REAEESSKIRAPTTMKKFE-DSEKAKKPVRSMIETRGEKPKEKAKNSKKKG--AKKEG 185
Score = 30.1 bits (67), Expect = 2.5
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 938 KDAEKMKKKGAEKIGKKKKKKKKKKK------KKKKKKKKKKKEAEKMKKKTEEA 986
++AE+ K A KK + +K KK + + +K K+K + K K +E
Sbjct: 131 REAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEG 185
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 39.8 bits (93), Expect = 0.005
Identities = 11/69 (15%), Positives = 26/69 (37%)
Query: 910 KIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKK 969
K+ K + + + G EK+ + ++ K + + K +K++ K+
Sbjct: 1857 KLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKERWLNTTKQF 1916
Query: 970 KKKKKEAEK 978
K +E
Sbjct: 1917 SKTSQELIG 1925
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis;
2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Length = 337
Score = 39.1 bits (90), Expect = 0.005
Identities = 13/96 (13%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
Query: 893 ILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIG 952
+ +K K+ G K K+ + + K ++++ KK K
Sbjct: 110 VKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHL-ACKEERLAM 168
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
++ K ++ +++KK + +K ++ ++ ++
Sbjct: 169 TREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQE 204
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 39.6 bits (91), Expect = 0.005
Identities = 12/95 (12%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 894 LFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGK 953
+ + + + ++ ++ ++ K+ EKM + + K+ E+ K
Sbjct: 505 MLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDR-----VQLLKEQERTLAL------K 553
Query: 954 KKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+++++ K+ +K+ + K E + ++ K +
Sbjct: 554 LQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKA 588
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 39.2 bits (92), Expect = 0.006
Identities = 4/57 (7%), Positives = 22/57 (38%)
Query: 904 KKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKK 960
++G+ + AE+ ++ ++ + K++ + + + + + +
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 32.3 bits (74), Expect = 0.80
Identities = 3/61 (4%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 911 IRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKK 970
+ ++ + A + ++++ + A + K + + + + + +
Sbjct: 264 LARQGSRTPSA---AVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGR 320
Query: 971 K 971
Sbjct: 321 S 321
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 37.0 bits (85), Expect = 0.006
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 943 MKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKE 975
+ K + K KK K +K K KKKK+K+KE
Sbjct: 1 IPPKTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
Score = 32.7 bits (74), Expect = 0.19
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 940 AEKMKKKGAEKIGKKKKKKKKKKKKKKKKKK 970
K K A+K GK +K K KKKK+K+K
Sbjct: 2 PPKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 31.6 bits (71), Expect = 0.38
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 955 KKKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
K K KK K +K K +K K+K +E
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
Score = 29.7 bits (66), Expect = 1.9
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
K K KK K +K K + +K K+K A
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKESYA 36
Score = 28.1 bits (62), Expect = 7.1
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 924 MRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKK 960
+ K + KK K +K K KKKK+K+K
Sbjct: 1 IPPKTSGKAAKKAGK-----AQKNITKTDKKKKRKRK 32
Score = 27.7 bits (61), Expect = 8.9
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 957 KKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
K K KK K +K KKK + E
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_T
Length = 209
Score = 37.8 bits (87), Expect = 0.008
Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 33/126 (26%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMK------KKKKDAEK------- 942
R +R K+KG K++ +EA K +M+ +K ++A+K
Sbjct: 62 RARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYH 121
Query: 943 --------------------MKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKK 982
+ K AEK +K + + K+ K K +++K A + ++
Sbjct: 122 DMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKSKASRERKIARREERL 181
Query: 983 TEEAEK 988
E+
Sbjct: 182 APGPER 187
Score = 32.0 bits (72), Expect = 0.74
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKK---KEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIG 952
R R +K + A+KI K K M K K K AEK ++K
Sbjct: 100 RVLRRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQF 159
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
+ K+ K K +++K +++++ + T +
Sbjct: 160 EAKRAKSKASRERKIARREERLAPGPERSCTSTS 193
Score = 29.7 bits (66), Expect = 3.7
Identities = 9/66 (13%), Positives = 28/66 (42%)
Query: 922 EKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
K + +K EK + +A++ K K + + +++++ ++ + K
Sbjct: 143 HKSKAEKAREKTLSDQFEAKRAKSKASRERKIARREERLAPGPERSCTSTSGCSSSCGTK 202
Query: 982 KTEEAE 987
+ +E +
Sbjct: 203 EGQEVK 208
Score = 29.3 bits (65), Expect = 5.5
Identities = 9/67 (13%), Positives = 30/67 (44%)
Query: 894 LFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGK 953
+ + K + ++K +++ K+ K K + + + + E++ + + + G
Sbjct: 142 IHKSKAEKAREKTLSDQFEAKRAKSKASRERKIARREERLAPGPERSCTSTSGCSSSCGT 201
Query: 954 KKKKKKK 960
K+ ++ K
Sbjct: 202 KEGQEVK 208
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 36.2 bits (84), Expect = 0.008
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 938 KDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEA 976
+ +K+ E K+ +K++ KK K + A
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEAA 112
Score = 34.2 bits (79), Expect = 0.044
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 15/60 (25%)
Query: 939 DAEKMKK---KGA------------EKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKT 983
EK+K+ KG I K+ + + K+ +K+E++K K
Sbjct: 51 YPEKVKEWVLKGVELSHRAKAILWNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 33.5 bits (77), Expect = 0.076
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 954 KKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
K+ + + K+ +K K K E A
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEAA 112
Score = 31.9 bits (73), Expect = 0.26
Identities = 5/39 (12%), Positives = 16/39 (41%)
Query: 943 MKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
+ G K + + K+ +K++ K+++ +
Sbjct: 73 LWNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
>2y8d_A Erythrocyte membrane protein 1; DBL epsilon, pfemp1, malaria; 1.84A
{Plasmodium falciparum}
Length = 306
Score = 38.3 bits (89), Expect = 0.009
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
Query: 915 KKKKKEAEKMRKKKGAEKMKKKKKDAEKMK---KKGAEKIGKKK----KKKKKKKKKKKK 967
+++K +K+ + + + D K I KK + K + K
Sbjct: 192 DRRQKLYDKLNSECISAECTNGSVDNSKCTHACVNYKNYILTKKTEYEIQTNKYDNEFKN 251
Query: 968 KKKKKKKEAEKMKKKTEE 985
K K + +K+K +
Sbjct: 252 KNSNDKDAPDYLKEKCND 269
Score = 37.9 bits (88), Expect = 0.012
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 10/95 (10%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKG--------AEKMKKKKKDAEKMKKKGAEKIGK 953
+++K +K+ + + + KK + E K +
Sbjct: 192 DRRQKLYDKLNSECISAECTNGSVDNSKCTHACVNYKNYILTKKTEYEIQTNKYDNEF-- 249
Query: 954 KKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K K K K+K + E + K ++ K
Sbjct: 250 KNKNSNDKDAPDYLKEKCNDNKCECLNKHIDDKNK 284
Score = 34.8 bits (80), Expect = 0.10
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKK-KKDAEKMKKKGAEKIGKKKKKKKK 960
KK E K + + + K + +K+K + + K + K K +
Sbjct: 232 LTKKTEYEIQTNKYDNEFKNKNSNDKDAPDYLKEKCNDNKCECLNKHIDDKNKTWKNPYE 291
Query: 961 KKKKKKKKKKKKKK 974
+ K K K
Sbjct: 292 TLEDTFKSKCDCPK 305
Score = 33.7 bits (77), Expect = 0.27
Identities = 16/72 (22%), Positives = 22/72 (30%), Gaps = 3/72 (4%)
Query: 915 KKKKKEAEKMRKK--KGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKK 972
KK E E K + KDA K+ K + K K K K
Sbjct: 232 LTKKTEYEIQTNKYDNEFKNKNSNDKDAPDYLKEKCND-NKCECLNKHIDDKNKTWKNPY 290
Query: 973 KKEAEKMKKKTE 984
+ + K K +
Sbjct: 291 ETLEDTFKSKCD 302
Score = 29.4 bits (66), Expect = 6.0
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
Query: 892 FILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKK----GAEKMKKKKKDAEKMKKKG 947
+IL +K + K + + K K+A K+K E + K D K K
Sbjct: 230 YILTKKTEYEIQTNKYDNEFKNKNSNDKDAPDYLKEKCNDNKCECLNKHIDDKNKTWKNP 289
Query: 948 AEKIGKKKKKKKKKKK 963
E + K K K
Sbjct: 290 YETLEDTFKSKCDCPK 305
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 38.5 bits (89), Expect = 0.009
Identities = 15/62 (24%), Positives = 31/62 (50%)
Query: 926 KKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
+KK E ++ ++ M KK AE+ K++ K KK + +K +++ M+++ E
Sbjct: 395 QKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQAMEEEKPE 454
Query: 986 AE 987
Sbjct: 455 GH 456
Score = 33.1 bits (75), Expect = 0.42
Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 919 KEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKK---KKKKKKKKKKE 975
+ A+ +K ++ + K A +K + ++ ++ K ++ K++
Sbjct: 368 ESAKGDFEK--VLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEA 425
Query: 976 AEKMKKKTEEAEK 988
+ M KKT E
Sbjct: 426 NKAMGKKTSEGVT 438
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse,
BAR domain, endocytosis; 2.60A {Mus musculus} PDB:
3qe6_A
Length = 320
Score = 38.3 bits (88), Expect = 0.010
Identities = 9/96 (9%), Positives = 35/96 (36%), Gaps = 1/96 (1%)
Query: 893 ILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIG 952
+ ++ + G + + + + K ++++ KK +K +
Sbjct: 110 VRTWQRGAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKKSYHT-ARKDEKTAQ 168
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
++ K +++ +K ++ + K+ E+ +
Sbjct: 169 TRESHAKADSSMSQEQLRKLQERVGRCTKEAEKMKT 204
>1zro_A Erythrocyte binding antigen region II; EBA-175, RII, DBL, invasion,
HOST, malaria, disease, glycophorin, glycan, sialic
acid; HET: SO4; 2.25A {Plasmodium falciparum} SCOP:
a.264.1.1 a.264.1.1 PDB: 1zrl_A*
Length = 602
Score = 38.8 bits (90), Expect = 0.010
Identities = 13/64 (20%), Positives = 24/64 (37%)
Query: 915 KKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKK 974
KKK+E K K+ + K + K E KK +K + + K++
Sbjct: 530 SKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHS 589
Query: 975 EAEK 978
+ +
Sbjct: 590 DYKN 593
Score = 35.7 bits (82), Expect = 0.087
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 915 KKKKKEAEKMRKK-KGAEKMKKKKKDA-------EKMKKKGAEKIGKKKKKKKKKKKKKK 966
+ K K E ++ + K K KK+ K K+ ++ +K K
Sbjct: 495 QDKTKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQEYQKGNNYKM 554
Query: 967 KKKKKKKKEAEKMKKKTEE 985
+ K K +KK +E+
Sbjct: 555 YSEFKSIKPEVYLKKYSEK 573
Score = 34.6 bits (79), Expect = 0.18
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 934 KKKKKDAEKMKKKGAEKIGKKKKKKKKKKK--KKKKKKKKKKKEAEKMKKKTEEAEK 988
++ A+ K K + +K+ K + + K E + K+ E +
Sbjct: 189 LERDNRAKLPKSKCKNNALYEACEKECIDPCMKYRDWIIRSKFEWHTLSKEYETQKV 245
Score = 32.6 bits (74), Expect = 0.66
Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 8/91 (8%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKK------KGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
++ A+ + K K E K+ K + + + K + + K+ + K+
Sbjct: 189 LERDNRAKLPKSKCKNNALYEACEKECIDPCMKYRDWIIRSKFEWHTLSKEYETQKVPKE 248
Query: 956 KKKK--KKKKKKKKKKKKKKKEAEKMKKKTE 984
+ K + K K + ++
Sbjct: 249 NAENYLIKISENKNDAKVSLLLNNCDAEYSK 279
Score = 31.9 bits (72), Expect = 1.2
Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 6/80 (7%)
Query: 911 IRKKKKKKKEAEKMRKKKGAEKMKKKKKDA-----EKMKKKGAEKIGKKKKKKKKKKKKK 965
+ + + K K + E +K+ D + + + E K+ + +K K
Sbjct: 189 LERDNRAKLPKSKCKNNALYEACEKECIDPCMKYRDWIIRSKFE-WHTLSKEYETQKVPK 247
Query: 966 KKKKKKKKKEAEKMKKKTEE 985
+ + K +E
Sbjct: 248 ENAENYLIKISENKNDAKVS 267
Score = 29.9 bits (67), Expect = 5.3
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 892 FILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKI 951
+I +K+ ++ K+ E + K K K + KK +EK E
Sbjct: 528 WISKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEV-----YLKKYSEKCSNLNFEDE 582
Query: 952 GKKKKKKKKKKKKKKKKKKK 971
K++ K K + K
Sbjct: 583 FKEELHSDYKNKCTMCPEVK 602
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 38.1 bits (88), Expect = 0.010
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKK--KDAEKMKKKGAEKIGKKKKKKK 959
RK G + +E E KK+ ++ +K E+M KK I + +K
Sbjct: 196 RKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEK 255
Query: 960 KKKKKKKKKKKKKKK 974
K KK+ KKK+ + K
Sbjct: 256 KPKKEVKKKRWNRPK 270
Score = 36.2 bits (83), Expect = 0.041
Identities = 10/55 (18%), Positives = 25/55 (45%)
Query: 931 EKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
+K ++ +KK +++ KK+ + K +KK + +KK + ++
Sbjct: 241 KKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAA 295
Score = 35.8 bits (82), Expect = 0.054
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKK 968
E++ KK + +KK +++KKK+ + KM +KK + +KK
Sbjct: 237 EEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLA---------QKKDRVAQKKASF 287
Query: 969 KKKKKKEAE 977
+ +++ AE
Sbjct: 288 LRAQERAAE 296
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 38.6 bits (89), Expect = 0.010
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 4/109 (3%)
Query: 883 RREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKG---AEKMKKKKKD 939
E T + + R +++ R+K + EAEK RK+ A M +
Sbjct: 661 AIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTG 720
Query: 940 AEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAE-KMKKKTEEAE 987
K + + + + + + + K K + + EAE + KK E E
Sbjct: 721 NAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREME 769
Score = 33.2 bits (75), Expect = 0.55
Identities = 27/192 (14%), Positives = 67/192 (34%), Gaps = 14/192 (7%)
Query: 798 LENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAILRRSGMYTIAMA 857
L + D V D C+ + +R + + + R++ A+ +
Sbjct: 561 LFSVPDFVGDACKAIASRVR-----GAVASVTFDDFHKNSARIIRMAVFGFEM--SEDTG 613
Query: 858 YCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKK 917
G+ A + + V V ++V + +RTR ++ + +
Sbjct: 614 PDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPV------DQRTRDALQRSVQLAIEITTN 667
Query: 918 KKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAE 977
+EA + + E+ + + + +K+ + + +K+ + + + K EAE
Sbjct: 668 SQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAE 727
Query: 978 -KMKKKTEEAEK 988
+ + E E
Sbjct: 728 SRAEAARIEGEG 739
>3vuv_A Erythrocyte membrane protein, putative; duffy binding-like domain,
erythrocyte binding, merozoite SU malaria, cell
adhesion; 2.11A {Plasmodium falciparum}
Length = 339
Score = 38.3 bits (89), Expect = 0.011
Identities = 12/85 (14%), Positives = 19/85 (22%), Gaps = 10/85 (11%)
Query: 911 IRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGA-----EKIGKKKK-----KKKK 960
+K K+ + E E K+K K
Sbjct: 238 EESEKNMNTLKAVCFPKQPRTEANPALTVHENEMCSSTLKKYEEWYNKRKTEWTEQSIKY 297
Query: 961 KKKKKKKKKKKKKKEAEKMKKKTEE 985
K K +E + +K E
Sbjct: 298 NNDKINYTDIKTLSPSEYLIEKCPE 322
Score = 32.2 bits (73), Expect = 0.95
Identities = 10/101 (9%), Positives = 27/101 (26%), Gaps = 17/101 (16%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKK--------------KKKDAEKMKKKG 947
+ +K ++ K+ + + + +K + + K
Sbjct: 238 EESEKNMNTLKAVCFPKQPRTEANPALTVHENEMCSSTLKKYEEWYNKRKTEWTEQSIKY 297
Query: 948 AEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K K + +K E + KK ++ +
Sbjct: 298 NND---KINYTDIKTLSPSEYLIEKCPECKCTKKNLQDVFE 335
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 38.4 bits (89), Expect = 0.014
Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 913 KKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKK 972
++++++EAE + K++ + K+ +K++ A + G + + K + K K
Sbjct: 957 AQREQQREAEALIKEENLNEDAAKRYIRTSLKREYATENGTELNETLPKLSPLNPQYKTK 1016
Query: 973 KKE-AEKMKK 981
K+ +K+
Sbjct: 1017 KQAVFQKIVS 1026
>3u5c_G RP9, S10, YS4, 40S ribosomal protein S6-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3j16_C 3u5g_G
Length = 236
Score = 37.4 bits (86), Expect = 0.014
Identities = 17/83 (20%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAE--KIGK 953
R RR+ KG + K K ++ R ++ + K ++A+ ++ AE ++
Sbjct: 154 RDFVIRREVTKGEKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLA 213
Query: 954 KKKKKKKKKKKKKKKKKKKKKEA 976
K+ ++K +K + +K++ +A
Sbjct: 214 KRLSERKAEKAEIRKRRASSLKA 236
Score = 37.0 bits (85), Expect = 0.021
Identities = 15/96 (15%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 879 NDDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKK 938
DDVR + + + ++T K K + ++ ++K ++ K + A+ ++
Sbjct: 150 EDDVRDFVIRR---EVTKGEKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAA 206
Query: 939 DAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKK 974
+ ++ + K+ ++K +K + +K++ K
Sbjct: 207 EYAQL-------LAKRLSERKAEKAEIRKRRASSLK 235
Score = 35.9 bits (82), Expect = 0.042
Identities = 15/82 (18%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 901 RRKKKKGAEKIRK--KKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKK 958
+R K A IRK K+ + ++ K +K A K+++ + + ++K+
Sbjct: 131 KRLGPKRANNIRKFFGLSKEDDVRDFVIRREVTKGEKTYTKAPKIQRLVTPQ--RLQRKR 188
Query: 959 KKKKKKKKKKKKKKKKEAEKMK 980
++ K + + +++ AE +
Sbjct: 189 HQRALKVRNAQAQREAAAEYAQ 210
Score = 34.3 bits (78), Expect = 0.15
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 894 LFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGK 953
L K+ ++ + + K+ K A +RK G K+ D + G+
Sbjct: 111 LVIVKKGEQELEGLTDTTVPKRLGPKRANNIRKFFG----LSKEDDVRDFVIRREVTKGE 166
Query: 954 KKKKKKKKKK---------KKKKKKKKKKKEAEKMKKKTEEAEK 988
K K K + +K+ ++ K + A+ ++ E +
Sbjct: 167 KTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQ 210
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
national project on structural and functional analyses;
2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 37.7 bits (87), Expect = 0.015
Identities = 8/62 (12%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 930 AEKMKKKKKDAEKMKKK---GAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
+ + ++ ++ +K K + + K+ + K++ ++ KEA++ ++ E+
Sbjct: 104 IVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKM 163
Query: 987 EK 988
+
Sbjct: 164 DA 165
Score = 36.2 bits (83), Expect = 0.045
Identities = 9/87 (10%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Query: 904 KKKGAEKIRKKKKKKKEAEKMRKKKGA--EKMKKKKKDAEKMKKKGAEKIGKKKKKKKKK 961
+ E +++K + K ++ ++++ K+ E+ K+ +K
Sbjct: 108 ARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADI 167
Query: 962 KKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K +K +++ + + +
Sbjct: 168 NVTKADVEKARQQAQIRHQMAEDSKAD 194
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_G
Length = 219
Score = 36.9 bits (85), Expect = 0.017
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 944 KKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
++G I K K +K + K A+ +K +T K
Sbjct: 21 HRRGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRK 65
Score = 36.9 bits (85), Expect = 0.019
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 921 AEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMK 980
++G +K K A K + + K K + +K K++
Sbjct: 16 RSHTYHRRGLWAIKAKHGGA---LPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHPTKLR 72
Query: 981 K 981
Sbjct: 73 S 73
Score = 36.2 bits (83), Expect = 0.036
Identities = 6/56 (10%), Positives = 14/56 (25%)
Query: 929 GAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTE 984
++ K G +K + K K + + + T+
Sbjct: 15 SRSHTYHRRGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHPTK 70
Score = 34.6 bits (79), Expect = 0.11
Identities = 10/58 (17%), Positives = 18/58 (31%)
Query: 912 RKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKK 969
R ++ ++ K G K +K A K K + +K K +
Sbjct: 16 RSHTYHRRGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHPTKLRS 73
Score = 30.8 bits (69), Expect = 1.6
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKK 945
R+ K K G K +K A K A+ +K + K
Sbjct: 22 RRGLWAIKAKHGGA---LPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHP 68
Score = 30.0 bits (67), Expect = 2.7
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 16/89 (17%)
Query: 882 VRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAE 941
+ + ALG + R R+ ++G I+ K K + +
Sbjct: 1 MAPTSKMALG--IKRASRSHTYHRRGLWAIKAKHGGAL-------PKAEKPAAIAEP--- 48
Query: 942 KMKKKGAEKIGKKKKKKKKKKKKKKKKKK 970
K A+ + K + +K K +
Sbjct: 49 --KFYPADDV--KPRTVSTRKPHPTKLRS 73
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 37.4 bits (86), Expect = 0.018
Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 909 EKIRKKKKKKKEAEKMRKK---------KGAEKMKKKKKDAEKMKKK--GAEKIGKKKKK 957
E I++ +K +E K KK + + ++ + +K K+ ++ KK
Sbjct: 98 ELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKK 157
Query: 958 KKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ +++ +K K KK + K E+
Sbjct: 158 EGATQREIEKAAVKSKKATDTYKLYVEKYAL 188
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 35.0 bits (80), Expect = 0.019
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 942 KMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKK 974
K K K K+KKKK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 35.0 bits (80), Expect = 0.020
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 937 KKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKK 969
KKD K G K+KKKK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 35.0 bits (80), Expect = 0.022
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 933 MKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKK 968
M KK A K A+ G K+KKKK K K+K+K
Sbjct: 1 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 34.6 bits (79), Expect = 0.030
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 943 MKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKM 979
M K + K K K+KKKK K K+ EK+
Sbjct: 1 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKV 37
Score = 33.8 bits (77), Expect = 0.052
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 950 KIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
K K K K K+KKKK K K+K +
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNS 40
Score = 30.0 bits (67), Expect = 1.3
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 914 KKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKK 946
KK K K G K KKKK K K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 28.0 bits (62), Expect = 6.2
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 910 KIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKM 943
K K + K K +K K K EK+
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKV 37
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 37.3 bits (87), Expect = 0.021
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 2/88 (2%)
Query: 901 RRKKKKGAEKIRKKKKK--KKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKK 958
R+ + E +K K K + K+ + ++ + G K + ++
Sbjct: 46 WRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLC 105
Query: 959 KKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
+ K+ K + K ++ EE
Sbjct: 106 VLQLKQLSKDLSDQVAGLAKEAQQLEEE 133
Score = 36.9 bits (86), Expect = 0.035
Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 7/98 (7%)
Query: 880 DDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKD 939
D R F + +++ ++ + KKK K+ + K +
Sbjct: 43 DKKWRR-------TQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGT 95
Query: 940 AEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAE 977
+ + + + K+ K + K+ ++ E E
Sbjct: 96 LKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEE 133
Score = 33.1 bits (76), Expect = 0.48
Identities = 12/99 (12%), Positives = 32/99 (32%), Gaps = 9/99 (9%)
Query: 899 RTRRKKKKGAEKI----RKKKKKKKEAEKMRKKKGAE-----KMKKKKKDAEKMKKKGAE 949
R R + I +K ++ + E +K KK K+ + +
Sbjct: 27 RRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQ 86
Query: 950 KIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ K ++ ++ + K+ ++ + + K
Sbjct: 87 VKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAK 125
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 196
Score = 36.6 bits (84), Expect = 0.021
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 898 KRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKK 957
+R R KK K K K+ E + K K D + K + ++ K
Sbjct: 107 RRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKT 166
Query: 958 KKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K+ +K+++++ + KK+E K K EE +K
Sbjct: 167 KE-ARKRREERLQAKKEEIIKTLSKEEETKK 196
Score = 31.6 bits (71), Expect = 0.98
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 897 KKRTRRKKKKGAEKIRKKKKKK-----KEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKI 951
+K T ++K I K+K ++ MR+ + ++ ++ ++++K+ + +
Sbjct: 64 RKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSL 123
Query: 952 GKKKKKKK-----------KKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K K K K K +KK +AE + KT+EA K
Sbjct: 124 YLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK 171
Score = 31.2 bits (70), Expect = 1.2
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 897 KKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKK 956
K + K+ E I K K A+K RKK A++ + ++ ++ +K+ E++ KK+
Sbjct: 128 KGNVFKNKRILMEHIHKLK-----ADKARKKLLADQAEARRSKTKEARKRREERLQAKKE 182
Query: 957 KKKKKKKKKKKKKK 970
+ K K+++ KK
Sbjct: 183 EIIKTLSKEEETKK 196
Score = 30.0 bits (67), Expect = 2.8
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 894 LFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKK 946
+ + K + +KK A++ ++ K KEA K R+++ K ++ K K ++
Sbjct: 142 IHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEET 194
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 37.2 bits (87), Expect = 0.023
Identities = 20/96 (20%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 898 KRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGA--EKMKKKKKDAEKMKKK---GAEKIG 952
+K E I+ +KK+ ++ ++ + A ++ K + D ++ KK ++IG
Sbjct: 5 NAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIG 64
Query: 953 KKKKKKKKKKKKKKKKK--KKKKKEAEKMKKKTEEA 986
K+ K K+ K +K+ +KKE + + + ++
Sbjct: 65 KRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKN 100
Score = 33.7 bits (78), Expect = 0.31
Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 899 RTRRKKKKGAEKI----RKKKKKKKEAEKMRKKKGAE-----KMKKKKKDAEKMKKKGAE 949
+ R + ++I ++ K + + ++ KK + K K K+DA+ + + E
Sbjct: 23 KKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAE-KE 81
Query: 950 KIGKKKKKKKKKKKKKKKKKKKK 972
K+ +KK+ +K+ + K + K
Sbjct: 82 KLSNEKKEIIEKEAEADKNLRSK 104
Score = 33.7 bits (78), Expect = 0.32
Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 880 DDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKD 939
+ + F +K ++I K+ K K++A+ + +K +KK+
Sbjct: 39 YKEWVK-------LRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEII 91
Query: 940 AE 941
+
Sbjct: 92 EK 93
Score = 32.2 bits (74), Expect = 0.85
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 947 GAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
G + K+ K KK K K K +KK
Sbjct: 437 GEPEFIPYIKELPKNTTSVKKAKGKNPKNTTSVKK 471
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 37.1 bits (85), Expect = 0.024
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 883 RREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEK 942
+ E F + K++ ++ K AE R+ ++ KK E K+ + K+++ + EK
Sbjct: 333 KMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKE---LEEKRRQFEDEK 389
Query: 943 MKKKGAEKIGKKKKKKKKKKKKKKKKK 969
+ ++I +++ + +K KKK K
Sbjct: 390 ANWEAQQRILEQQNSSRTLEKNKKKGK 416
Score = 34.0 bits (77), Expect = 0.24
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 893 ILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIG 952
+ + R+R+ + K K ++ K A+ +++++ KMKK E
Sbjct: 285 VHYENYRSRKLAAVTYNGVDNNKNK----GQLTKSPLAQMEEERREHVAKMKKMEMEMEQ 340
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ K K+K +K K + + ++ E+MKK E K
Sbjct: 341 VFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHK 376
Score = 32.9 bits (74), Expect = 0.55
Identities = 13/78 (16%), Positives = 37/78 (47%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
+ + K+K + + + ++ E+M+K A+ + ++K + +K + ++
Sbjct: 339 EQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRI 398
Query: 956 KKKKKKKKKKKKKKKKKK 973
+++ + +K KKK K
Sbjct: 399 LEQQNSSRTLEKNKKKGK 416
Score = 32.1 bits (72), Expect = 1.1
Identities = 15/85 (17%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 895 FRKKRTRRKKK---KGAEKIRKKKKKKKEAEKMRK--KKGAEKMKKKKKDAEKMKKKGAE 949
+K ++ K EK++K K + E ++ + KK E K+ ++ + +
Sbjct: 331 MKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKA 390
Query: 950 KIGKKKKKKKKKKKKKKKKKKKKKK 974
+++ +++ + +K KKK
Sbjct: 391 NWEAQQRILEQQNSSRTLEKNKKKG 415
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Length = 108
Score = 35.0 bits (80), Expect = 0.025
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 936 KKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKK 968
K+ K K A G KK KKK KK K +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 30.4 bits (68), Expect = 0.80
Identities = 10/31 (32%), Positives = 10/31 (32%)
Query: 943 MKKKGAEKIGKKKKKKKKKKKKKKKKKKKKK 973
M K K KK KKK KK
Sbjct: 1 MPPKQQLSKAAKAAAALAGGKKSKKKWSKKS 31
Score = 29.2 bits (65), Expect = 2.4
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 914 KKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKK 946
K++ +A K K KKK + MK +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 28.8 bits (64), Expect = 3.2
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 953 KKKKKKKKKKKKKK---KKKKKKKKEAEKMKKK 982
K++ K K KK KKK + MK +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 28.4 bits (63), Expect = 3.5
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 954 KKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
K++ K K KK + + KK ++
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKD 34
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 36.5 bits (84), Expect = 0.025
Identities = 12/70 (17%), Positives = 29/70 (41%)
Query: 912 RKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKK 971
+ + ++ K+ G ++ EK K+K ++K+ K + K +K ++K
Sbjct: 134 LQPGHRYCLLGQLSKEVGWNYADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEK 193
Query: 972 KKKEAEKMKK 981
+ E +
Sbjct: 194 LGTQLEILAP 203
Score = 30.3 bits (68), Expect = 2.4
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 944 KKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
++ +K+K+K K ++K+ K + +AEK ++ +
Sbjct: 154 YADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQL 198
Score = 29.6 bits (66), Expect = 4.0
Identities = 16/77 (20%), Positives = 37/77 (48%)
Query: 912 RKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKK 971
R K+ +A K+ + + + + ++++ A+ I + ++K+K+K K ++K+
Sbjct: 119 RTKRMVIPDALKVLRLQPGHRYCLLGQLSKEVGWNYADTIRELEEKRKEKAKVSYDRRKQ 178
Query: 972 KKKEAEKMKKKTEEAEK 988
K K +K EE
Sbjct: 179 LAKLRVKAEKAAEEKLG 195
Score = 28.8 bits (64), Expect = 7.5
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 903 KKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKI 951
++ +K+K+K + R+K+ A+ K +K AE+ E +
Sbjct: 153 NYADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEIL 201
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 37.1 bits (86), Expect = 0.027
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKK 967
E IR++ KE ++ +K +K K A+K K KG + G K + K ++ K
Sbjct: 335 EPIRQEFANNKEFQEASEKGYPVATPQKSKKAKKPKNKGTKYPGATKTNEIATKLEETK 393
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Length = 301
Score = 36.6 bits (84), Expect = 0.029
Identities = 10/87 (11%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 904 KKKGAEKIRKKKKKKKEAEKMRKKKGA--EKMKKKKKDAEKMKKKGAEKIGKKKKKKKKK 961
K E +++K +E + +++ ++++ K+ E+ ++ + ++ +
Sbjct: 101 TKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDI 160
Query: 962 KKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K +K K++ + E +
Sbjct: 161 NATKADVEKAKQQAHLRSHMAEESKNE 187
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 36.7 bits (84), Expect = 0.029
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 10/101 (9%)
Query: 898 KRTRRKKKKGAEKIRK----------KKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKG 947
++ K RK K K A+ + K K ++ A ++
Sbjct: 102 QKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNA 161
Query: 948 AEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ KK + +K K + +K EK ++ E K
Sbjct: 162 NADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAIAEITK 202
Score = 29.8 bits (66), Expect = 5.0
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 4/62 (6%)
Query: 927 KKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
K ++ K +K + KK +K K K +K K + K A
Sbjct: 99 KTWQKENYHHTLMQIKERKDLEDLF----KKAQKPWAKLLAKVEKAKADYHSACKTERSA 154
Query: 987 EK 988
Sbjct: 155 TN 156
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 36.0 bits (82), Expect = 0.032
Identities = 6/45 (13%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 895 FRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKD 939
F + RK+K + K+ ++++ + + + K++
Sbjct: 133 FENTQDVRKRKT--REAAKRNRRRRPQARFTPQNKQDVPATKQEA 175
Score = 36.0 bits (82), Expect = 0.033
Identities = 10/68 (14%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 912 RKKKKKKKEA--EKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKK 969
R +++ + ++ ++++ E + +K K + A K ++++ + + + K+
Sbjct: 113 RFRREVMRAGVIQECKRRRFFENTQDVRK----RKTREAAKRNRRRRPQARFTPQNKQDV 168
Query: 970 KKKKKEAE 977
K+EA+
Sbjct: 169 PATKQEAD 176
Score = 32.2 bits (72), Expect = 0.51
Identities = 6/63 (9%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 933 MKKKKKDAEK------MKKKGA-EKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
+ + +++ + K++ E +K+K ++ K+ ++++ + + + K+
Sbjct: 111 LNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPA 170
Query: 986 AEK 988
++
Sbjct: 171 TKQ 173
Score = 30.6 bits (68), Expect = 1.7
Identities = 3/36 (8%), Positives = 18/36 (50%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+K+K ++ K+ ++++ + + + + ++
Sbjct: 139 VRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQE 174
Score = 29.8 bits (66), Expect = 3.4
Identities = 5/53 (9%), Positives = 23/53 (43%)
Query: 894 LFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKK 946
+ ++ + RR + + ++K ++ + + R+ + + K+ ++
Sbjct: 123 VIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEA 175
Score = 29.5 bits (65), Expect = 3.8
Identities = 8/64 (12%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 898 KRTRRKKKKGA--EKIRKKK-KKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKK 954
R RR+ + ++ ++++ + + + RK + A K ++++ + + + +
Sbjct: 112 NRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPAT 171
Query: 955 KKKK 958
K++
Sbjct: 172 KQEA 175
Score = 29.5 bits (65), Expect = 4.4
Identities = 5/36 (13%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 953 KKKKKK---KKKKKKKKKKKKKKKKEAEKMKKKTEE 985
+K+K + K+ ++++ + + + + + K E
Sbjct: 140 RKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEA 175
Score = 29.5 bits (65), Expect = 4.5
Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 901 RR-KKKKGAEKIRKKKKKKKEAEK---MRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKK 956
R +++ + ++ K+++ E +RK+K E K+ ++ + + K+
Sbjct: 112 NRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRR---RRPQARFTPQNKQDV 168
Query: 957 KKKKKKK 963
K++
Sbjct: 169 PATKQEA 175
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 36.7 bits (84), Expect = 0.033
Identities = 11/60 (18%), Positives = 17/60 (28%)
Query: 124 ASVLQELKTCAPIPDATHVVVKVPVEGAPTPATPDTEAPTPAPGTESGPSSTTPGPETKT 183
+ L L +PD P G P +GP +T+ P +
Sbjct: 33 SDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRY 92
Score = 36.3 bits (83), Expect = 0.048
Identities = 12/48 (25%), Positives = 14/48 (29%)
Query: 132 TCAPIPDATHVVVKVPVEGAPTPATPDTEAPTPAPGTESGPSSTTPGP 179
+ A H V VP P P P P +S GP
Sbjct: 31 AASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGP 78
Score = 31.7 bits (71), Expect = 1.3
Identities = 10/47 (21%), Positives = 10/47 (21%)
Query: 135 PIPDATHVVVKVPVEGAPTPATPDTEAPTPAPGTESGPSSTTPGPET 181
P T P PD P P P T G
Sbjct: 24 PSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSV 70
Score = 31.3 bits (70), Expect = 2.0
Identities = 9/50 (18%), Positives = 11/50 (22%)
Query: 137 PDATHVVVKVPVEGAPTPATPDTEAPTPAPGTESGPSSTTPGPETKTLES 186
P T P AP P + T PG +
Sbjct: 41 PPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAV 90
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 34.9 bits (80), Expect = 0.035
Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 19/109 (17%)
Query: 898 KRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMK-KKKKDAEKMKKKGAEKIGKKKK 956
+ + + E + K + ++KE E+ EK + + AE+ AE+ +
Sbjct: 16 ASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLI 75
Query: 957 KKKKKKKKKKK------------------KKKKKKKEAEKMKKKTEEAE 987
K K + + K K KK+K + E ++K+ ++ E
Sbjct: 76 KNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124
Score = 32.2 bits (73), Expect = 0.27
Identities = 10/61 (16%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 928 KGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
+ ++M K++ ++K+ EK ++K+ ++K ++K + + + + +AE
Sbjct: 10 EREKEMASMKEEFTRLKEA-LEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAE 68
Query: 988 K 988
+
Sbjct: 69 E 69
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 36.3 bits (84), Expect = 0.035
Identities = 33/218 (15%), Positives = 66/218 (30%), Gaps = 18/218 (8%)
Query: 683 ALGLIHANHGAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDDIYEQLKFNLYQD 742
GL + D L + D N + R L L A E ++
Sbjct: 13 EYGLYNQCKKLND-DELFRLLDDH-NSLKRISSARVLQLRGGQDAVRLAIEFCS---DKN 67
Query: 743 DAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVG----ISFIMYGQL 798
A +G + + K E + +++ +R A+
Sbjct: 68 YIRRDIGA-FILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS 126
Query: 799 ENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVAT-KRLLHD--AILRRSGMYTIA 855
+ + +K +RR+ + A++ + + LL D +R + I
Sbjct: 127 PKIVEQSQITAFDKSTNVRRATAF--AISVINDKATIPLLINLLKDPNGDVRNWAAFAIN 184
Query: 856 MAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFI 893
+ + + D N++VR EA+ L +
Sbjct: 185 INKYDNSDIRD---CFVEMLQDKNEEVRIEAIIGLSYR 219
Score = 34.8 bits (80), Expect = 0.12
Identities = 32/219 (14%), Positives = 57/219 (26%), Gaps = 20/219 (9%)
Query: 681 LYALGLIHANHGAVINDYLLGQVKDATNEMVRHGGCLGLG-LAAMGSARDDIYEQLKFNL 739
L L AV + D N + R G LG + D+++ L
Sbjct: 44 ARVLQLR-GGQDAV--RLAIEFCSDK-NYIRRDIGAFILGQIKICKKCEDNVFNILNNMA 99
Query: 740 YQD-DAVTGEAAGIAMG-LVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQ 797
D A A + I + + + R A IS I
Sbjct: 100 LNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVI--ND 157
Query: 798 LENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVAT-KRLLHD--AILRRSGMYTI 854
L+ L ++ + +R + I + + +L D +R
Sbjct: 158 KATIPLLINLL-KDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIE----A 212
Query: 855 AMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFI 893
+ L + V + + A G +
Sbjct: 213 IIGLSYRKDKRVLSVLCDELK---KNTVYDDIIEAAGEL 248
Score = 30.5 bits (69), Expect = 2.7
Identities = 31/218 (14%), Positives = 59/218 (27%), Gaps = 23/218 (10%)
Query: 682 YALGLI---HANHGAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSARDD--IYEQLK 736
+ LG I V N + D + VR + I EQ +
Sbjct: 76 FILGQIKICKKCEDNVFNILNNMALNDK-SACVRATAIESTAQRCKKNPIYSPKIVEQSQ 134
Query: 737 FNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYG 796
+ A A+ ++ I ++ K+ + + A I+ Y
Sbjct: 135 ITAFDKSTNVRRATAFAIS----VINDKATIPLLINLLKD-PNGDVRNWAAFAININKYD 189
Query: 797 QLENADDLVRDLCEEKDAILRRSGMYTIAMAYCGSGSNVATKRL---LHDAILRRSGMYT 853
+ D V L ++K+ +R + L L +
Sbjct: 190 NSDIRDCFVEML-QDKNEEVRIE----AIIGLSYRKDKRVLSVLCDELKKNTVYDD---- 240
Query: 854 IAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALG 891
I A G L + ++++ A+ L
Sbjct: 241 IIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKLK 278
Score = 29.4 bits (66), Expect = 5.8
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 5/51 (9%)
Query: 477 LLHVAVSDVNDDVRREAVTALGFILFRTLFYVAPACTRSPWPGVISLLDDP 527
L ++A++D + VR A+ + P + D
Sbjct: 95 LNNMALNDKSACVRATAIESTA-----QRCKKNPIYSPKIVEQSQITAFDK 140
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 34.8 bits (79), Expect = 0.036
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 940 AEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKK 973
E K A K G KK K +KK KK+KK +K
Sbjct: 2 PEPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 33.6 bits (76), Expect = 0.097
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 944 KKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAE 977
+ + KK KK K +KK KK+KK E
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
Score = 32.4 bits (73), Expect = 0.25
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 936 KKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKK 968
+ + KKG++K K +KK KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 32.1 bits (72), Expect = 0.32
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 943 MKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKK 974
M + KK KK K +KK KK+KK
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKTQKKGDKKRKK 32
Score = 31.7 bits (71), Expect = 0.41
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 933 MKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKK 967
M + K A KK + + K +KK KK+KK +K
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 30.9 bits (69), Expect = 0.71
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
K KK KK K +KK +K KK +E
Sbjct: 4 PAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
Score = 30.5 bits (68), Expect = 0.95
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 948 AEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKT 983
E KK KK K +KK K+ +K +K++
Sbjct: 2 PEPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKES 37
Score = 30.5 bits (68), Expect = 1.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 946 KGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEK 978
+ A+ KK KK K +KK KK+K++ K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 29.8 bits (66), Expect = 1.7
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
K KK KK K +KK + K +K +
Sbjct: 6 KSAPAPKKGSKKAVTKTQKKGDKKRKKSRKESYS 39
Score = 28.6 bits (63), Expect = 4.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 928 KGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKK 960
+ A+ KK ++K K +K KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
falciparum}
Length = 790
Score = 36.8 bits (85), Expect = 0.038
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 13/99 (13%)
Query: 903 KKKKGAEKIRK--KKKKKKEAEKMRKK-----KGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
KK+K +I+K K+ E + K + E +K D + K E
Sbjct: 624 KKEKEWGQIKKHFNKQFHGEGYDIAFKVKSYFEDNEADVRKSIDNFHVLKNKEEYEICNV 683
Query: 956 KKKKKKKKKKKKKK------KKKKKEAEKMKKKTEEAEK 988
+ + KKKK K+ K + K + + +
Sbjct: 684 DDNCRSQNNKKKKDIVTILLKELKDKIVSCKNQHKATKG 722
Score = 29.1 bits (65), Expect = 9.3
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 912 RKKKKKKKEAEKM-RKKKGAEKMKKKKKDAEK-MKKKGAEKIGKKKKKKKKKKKKKKKKK 969
R KK K + +K R ++ + D + + + + + K +
Sbjct: 328 RIKKIKIDKVKKECRDEQNKKYCSGDGHDCTQTNLAHNQIFVDLDCPRCQDQCIKYNEWI 387
Query: 970 KKKKKEAEKMKKK-TEEAEK 988
KK +E K K + E +K
Sbjct: 388 VKKLEEFYKQNLKYSMEIQK 407
>3u5e_L 60S ribosomal protein L13-A, 60S ribosomal protein L11-A;
translation, ribosome, ribosomal R ribosomal protein,
STM1, eukaryotic ribosome; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5i_L
Length = 199
Score = 35.5 bits (81), Expect = 0.043
Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 9/124 (7%)
Query: 861 SGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKE 920
+G A R + +AV D RR+ F +R + + K R K + E
Sbjct: 83 AGLTAAYARTIGIAV-----DHRRQNRNQEIFDA-NVQRLKEYQSKIIVFPRNGKAPEAE 136
Query: 921 AEKMRKKKG--AEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEK 978
A+ + A + + A + + + +KK + ++K+ ++K EAE
Sbjct: 137 QVLSAAATFPIAQPATDVEARAVQDNGESAFR-TLRLARSEKKFRGIREKRAREKAEAEA 195
Query: 979 MKKK 982
KKK
Sbjct: 196 EKKK 199
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_P
Length = 149
Score = 35.0 bits (80), Expect = 0.046
Identities = 12/64 (18%), Positives = 24/64 (37%)
Query: 917 KKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEA 976
K E +K K + + K K+ ++ K K +KK + K++
Sbjct: 81 LKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTWASVQSKKS 140
Query: 977 EKMK 980
+ +K
Sbjct: 141 DHLK 144
Score = 33.0 bits (75), Expect = 0.18
Identities = 13/73 (17%), Positives = 25/73 (34%)
Query: 905 KKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKK 964
++ K + +K K K+ K+ ++ K K+ +KK +
Sbjct: 77 QQYLLKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTWASVQ 136
Query: 965 KKKKKKKKKKEAE 977
KK K A+
Sbjct: 137 SKKSDHLKNFVAK 149
Score = 31.9 bits (72), Expect = 0.41
Identities = 11/57 (19%), Positives = 22/57 (38%)
Query: 930 AEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
+ + K + + K K + ++ K+ K+K K+ K + KK A
Sbjct: 77 QQYLLKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTWA 133
>4a18_U RPL13, 60S ribosomal protein L36; ribosome, eukaryotic initiation
factor 6, EIF6, transla large ribosomal subunit, rRNA;
3.52A {Tetrahymena thermophila} PDB: 4a19_U 4a1b_U
4a1d_U
Length = 206
Score = 35.5 bits (81), Expect = 0.049
Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 1/96 (1%)
Query: 882 VRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAE 941
+R +LF + + + KK + + + K +K +
Sbjct: 111 KKRLLAYVSKLVLFPRHQGKAKKGLVNDTADTSSAAQNALQTSVPLPSVSKREKAVSNIA 170
Query: 942 KMKKKGA-EKIGKKKKKKKKKKKKKKKKKKKKKKEA 976
+++KK I ++K +K K+K K + + +A
Sbjct: 171 ELRKKKVYRIIRQEKTNQKWDGKRKAKAQAAAEPKA 206
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T
3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 1s1i_P
Length = 189
Score = 35.0 bits (80), Expect = 0.057
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 17/110 (15%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEK------MRKKKGAEKMKKKKKDAEKMKKKGAE 949
R + + K++G K+K +EA +R+ + ++ K +DA K+ K
Sbjct: 62 RTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYH 121
Query: 950 KIGKKKKKKK-----------KKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ K+ K + K +++K +EAE + K A
Sbjct: 122 VLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKNRAARD 171
Score = 33.5 bits (76), Expect = 0.19
Identities = 15/79 (18%), Positives = 36/79 (45%)
Query: 910 KIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKK 969
+R+ K ++A K+ K K+ K +A K K+ E I + K +++K ++ +
Sbjct: 101 VLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAE 160
Query: 970 KKKKKEAEKMKKKTEEAEK 988
++ K ++ + +
Sbjct: 161 ARRLKNRAARDRRAQRVAE 179
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A
{Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Length = 522
Score = 35.9 bits (82), Expect = 0.065
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 1/96 (1%)
Query: 894 LFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDA-EKMKKKGAEKIG 952
LF + + + E K + K E + + DA +++K+ AE +G
Sbjct: 47 LFEEANSTLLTRGAPEGQGAKVTEWKLGEDRIELTLQSGRYVRVHDAIFRLRKQLAEALG 106
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
KK K + + + K +M K
Sbjct: 107 KKYKIGIRGIEVESFIIKVPADHELRMLKVPYIKSM 142
Score = 33.5 bits (76), Expect = 0.35
Identities = 12/137 (8%), Positives = 37/137 (27%)
Query: 852 YTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRKKRTRRKKKKGAEKI 911
+ + + S K + + N + + + + + +
Sbjct: 25 FNLKAYFKTSADPTPAKDAIAALFEEANSTLLTRGAPEGQGAKVTEWKLGEDRIELTLQS 84
Query: 912 RKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKK 971
+ + ++RK+ KK K ++ + + + K K +
Sbjct: 85 GRYVRVHDAIFRLRKQLAEALGKKYKIGIRGIEVESFIIKVPADHELRMLKVPYIKSMEN 144
Query: 972 KKKEAEKMKKKTEEAEK 988
+ + + E K
Sbjct: 145 IEGGIQLELEVGEAEMK 161
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 34.4 bits (78), Expect = 0.070
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 938 KDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKK 973
K +KK E I K + KK KKK K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 34.0 bits (77), Expect = 0.079
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 933 MKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKK 970
M K+ +K K+ K + KK KKK K K K K
Sbjct: 1 MGKQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 32.1 bits (72), Expect = 0.34
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 950 KIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
G+KK K+ K + KK KKK K K K A
Sbjct: 6 AAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDKVNHA 42
Score = 31.3 bits (70), Expect = 0.68
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 932 KMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKK 967
K + K A + K KKK K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 31.3 bits (70), Expect = 0.74
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 944 KKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKM 979
+ +K K+ K + KK KKK K K +K+
Sbjct: 4 QPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDKV 39
Score = 30.9 bits (69), Expect = 1.0
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 951 IGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+GK+ +KK K+ K + KK +K K + +K
Sbjct: 1 MGKQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 30.5 bits (68), Expect = 1.2
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 943 MKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMK 980
M K+ A K K+ K + KK KKK K K K
Sbjct: 1 MGKQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 30.5 bits (68), Expect = 1.4
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 940 AEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKE 975
++ + K + KK KKK K K K+
Sbjct: 2 GKQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKD 37
Score = 29.8 bits (66), Expect = 2.4
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 927 KKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKK 966
K+ A KK K+ K + KKK K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAK----KGGKKKWTKGKAKDK 38
Score = 28.6 bits (63), Expect = 5.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 914 KKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKK 946
+KK E + K A+K KKK K K K
Sbjct: 6 AAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 35.6 bits (82), Expect = 0.084
Identities = 14/96 (14%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 892 FILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGA--- 948
F+ + + + +K ++++ + EA+ +++ KM+K K+++E + G
Sbjct: 384 FLQAVSEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSE---ESGEFDD 440
Query: 949 --EKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKK 982
+ + K K K+ +K+ + + +++
Sbjct: 441 LVSALRSGEVFDKDLSKLKRNRKRITNQMTDSSRER 476
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 35.5 bits (82), Expect = 0.084
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 901 RRKKKKGAEKIRKKKKK--KKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKK 958
R+ + A+ + K K K EKM+KK+ + ++ A+ + K +
Sbjct: 43 WRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQ 102
Query: 959 KKKKKKK-KKKKKKKKKEAEKMKKKTEEA 986
KK + + K E K++ + E
Sbjct: 103 IKKVRLLIDEAILKCDAERIKLEAERFEN 131
Score = 35.5 bits (82), Expect = 0.089
Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 7/102 (6%)
Query: 880 DDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKD 939
D R FR + K ++ I +K KKK+
Sbjct: 40 DSEWRR-------CRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTA 92
Query: 940 AEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
K ++ + + K ++ K + + E +++
Sbjct: 93 DALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLRE 134
Score = 33.5 bits (77), Expect = 0.41
Identities = 12/99 (12%), Positives = 30/99 (30%), Gaps = 9/99 (9%)
Query: 899 RTRRKKKKGAEKI----RKKKKKKKEAEKMRKKKGAE-----KMKKKKKDAEKMKKKGAE 949
R K +++ + ++ + A+ + K K + KKK+ +
Sbjct: 24 EKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPEN 83
Query: 950 KIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ K + KK + ++ K +
Sbjct: 84 VLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAERI 122
Score = 30.5 bits (69), Expect = 3.1
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 948 AEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
+ +++ KK+KK+ + KKK ++ + + E
Sbjct: 471 VKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNME 510
Score = 29.3 bits (66), Expect = 7.7
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 933 MKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMK 980
M ++ K + KK+KK+ + KKK + +++
Sbjct: 460 MPPGLQELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQ 507
Score = 28.9 bits (65), Expect = 9.1
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 947 GAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
G +++ K +++ KK+KK+ + +K + E
Sbjct: 463 GLQELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLEN 504
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half
barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs
138}
Length = 299
Score = 35.1 bits (80), Expect = 0.087
Identities = 18/100 (18%), Positives = 42/100 (42%), Gaps = 10/100 (10%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGA-----EKMKKKKKDAEKMKKKGAEK 950
++K ++ K +G E I + KK+ + + +KK+ ++++ ++ K
Sbjct: 18 KEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTNKEHK 77
Query: 951 IGKKKKKKKKKKKKKKKKKKKKKK-----EAEKMKKKTEE 985
K K +K K K K + +K+K +++
Sbjct: 78 TTKMSNKSNEKSGNVLPKDKPYKTLDDYLKLDKIKDLSKQ 117
Score = 33.9 bits (77), Expect = 0.21
Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 908 AEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKK 967
++ ++K +K +AE + E++KK+ D + KKK KI ++ ++ +
Sbjct: 14 EDRYKEKLLQKAKAEGVES---IEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRI 70
Query: 968 KKKKKKKEAEKMKKKTEEAEK 988
K+ K + K E++
Sbjct: 71 HTNKEHKTTKMSNKSNEKSGN 91
Score = 32.0 bits (72), Expect = 0.78
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 908 AEKIRKKKKKKKEA--EKMRKKKGAEKMKKKKKDAEKMK-KKGAEKIGKKKKKKKKKKKK 964
EK+ +K K + E++ KK+ A+++++KKK+ K+ + E+ + K+
Sbjct: 18 KEKLLQKAKAEGVESIEEL-KKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTNKEH 76
Query: 965 KKKKKKKKKKEAEKMKKKTEEAEK 988
K K K E ++ K
Sbjct: 77 KTTKMSNKSNEKSGNVLPKDKPYK 100
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 35.3 bits (81), Expect = 0.088
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKG--AEKIGKKKKKKKKKKKKKK 966
E++ K +K+ + R + G +++ K ++ + + + K+K+ + K
Sbjct: 303 EELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGS 362
Query: 967 KKKKKKKKEAEKMKKK 982
KKK K A K K+
Sbjct: 363 TKKKAKTGAAGKFKRG 378
Score = 35.3 bits (81), Expect = 0.099
Identities = 16/62 (25%), Positives = 25/62 (40%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKK 968
E+IR K+ ++ + + + K K+K E G KKK K K K+
Sbjct: 318 ERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKR 377
Query: 969 KK 970
K
Sbjct: 378 GK 379
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 35.1 bits (80), Expect = 0.11
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKK----KDAEKMKKKGAEKIGKKKKK 957
+ + G K K ++ + +K+ ++ K + EK+ K +I K ++
Sbjct: 201 KARIFGKHIDAYMKHLKGQSNEAFQKQFSKWSKTLEAAKVDSVEKLFTKVHAEIRKNPER 260
Query: 958 KKKKKKKKKKKKKKKKKEAEKMKKK 982
K KK K K+ KK K+
Sbjct: 261 VKSTKKNDKPKRDHKKFYPTKLTAA 285
Score = 28.9 bits (64), Expect = 9.2
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 914 KKKKKKEAEKMRK--KKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKK 971
K + + + + K K +++K + + KK K KK K ++K + K
Sbjct: 233 KTLEAAKVDSVEKLFTKVHAEIRKNPERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVK 292
Query: 972 KKKEA 976
K +
Sbjct: 293 TKFQL 297
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 34.7 bits (79), Expect = 0.11
Identities = 25/195 (12%), Positives = 67/195 (34%), Gaps = 13/195 (6%)
Query: 721 LAAMGSARDDIYEQLKFNLYQDDAVTGEAAGIAMGLVLLGSKS--ESAIQDMVAYAKETQ 778
+ M + + ++L L D + A + ++ + E ++ + + K+++
Sbjct: 23 ILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSE 82
Query: 779 HEKILRGLAVGISFIMYGQLENADDLVRDLCEE---KDAILRRSGMYTIAMAYCGSGSNV 835
+ + +A + + E ++ L D + + Y + + +
Sbjct: 83 AIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM 142
Query: 836 AT-----KRLL--HDAILRRSGMYTI-AMAYCGSGSNVATKRLLHVAVSDVNDDVRREAV 887
A+ +L + + + + I AM + + D ++ VR AV
Sbjct: 143 ASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAV 202
Query: 888 TALGFILFRKKRTRR 902
AL + + R+
Sbjct: 203 EALVHLATLNDKLRK 217
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 34.6 bits (79), Expect = 0.12
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 17/104 (16%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKK--KKKDAEKMKKKGAEKI-----GKK 954
RK G + +E + + +E +KK E + KK I K
Sbjct: 196 RKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAK 255
Query: 955 KKKKKKKKKKKKKKKK----------KKKKEAEKMKKKTEEAEK 988
KK+ K+ KK ++ A ++ ++
Sbjct: 256 STKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDE 299
Score = 29.2 bits (65), Expect = 6.4
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 16/83 (19%)
Query: 916 KKKKEAEKMRKKKGAEKMKKK-----KKDAEKMKKKGAEKIGKKKKKKKK-----KKKKK 965
KK +A+ M E + KK + D K E K+ KK +K
Sbjct: 228 KKGIDADGM------ESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASL 281
Query: 966 KKKKKKKKKEAEKMKKKTEEAEK 988
++ A EE ++
Sbjct: 282 VERLNALNSSAGADDDDEEEDDE 304
Score = 28.9 bits (64), Expect = 8.1
Identities = 9/77 (11%), Positives = 25/77 (32%), Gaps = 10/77 (12%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKK 968
E + KK A+ K ++ K+ + K +++K ++
Sbjct: 237 ESLYKKVHAAIRADPTMAKSTKKEPATHKR----------YNLKKLTYEQRKASLVERLN 286
Query: 969 KKKKKKEAEKMKKKTEE 985
A+ ++ ++
Sbjct: 287 ALNSSAGADDDDEEEDD 303
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA
polymerase III; HET: DGT; 2.39A {Geobacillus
kaustophilus} PDB: 3f2c_A* 3f2d_A*
Length = 1041
Score = 35.4 bits (82), Expect = 0.13
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 910 KIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKI 951
+ + K E +RK KG + +M+K +
Sbjct: 809 RGLEPSLAFKIMESVRKGKG-----LTPEFEAEMRKHDVPEW 845
Score = 30.4 bits (69), Expect = 4.0
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 908 AEKIRKKKKKKKEAEKMRKKKGAEK 932
E +RK K E E +K +
Sbjct: 820 MESVRKGKGLTPEFEAEMRKHDVPE 844
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 33.2 bits (76), Expect = 0.13
Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 5/81 (6%)
Query: 895 FRKKRTRRKKKKG-----AEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAE 949
G A++ R ++ ++ A E +KK + ++
Sbjct: 56 LLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAMIKELTTEKKARRPTRPTRASK 115
Query: 950 KIGKKKKKKKKKKKKKKKKKK 970
+ K +K K + K +
Sbjct: 116 ERRLASKAQKSSVKAMRGKVR 136
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 34.6 bits (79), Expect = 0.14
Identities = 34/191 (17%), Positives = 64/191 (33%), Gaps = 11/191 (5%)
Query: 260 QFLRDNLEWLARATNWAKLTATASLGVIH--RGHETEALAHMQSYLPRETGPTSGYYEGG 317
+ + LE L ++++ AT+ LG + +G T +LA MQ +Y
Sbjct: 35 RLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94
Query: 318 GLYALGLIHANHGAVIN-----DYLLGQVKDATNEDDAVTGEAA-GIAMGLVLLG--SKS 369
L I G + + + + E + A L ++
Sbjct: 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 154
Query: 370 ESAIQDMVAYAKETQHEKILRGLAV-GISFIMYGQLENADDLVRDLCEEKDAILRRSGMY 428
E++ + + Q ++ L+ LA+ + G L+NA + L S
Sbjct: 155 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214
Query: 429 TIAMAYCVSYL 439
+ A V Y
Sbjct: 215 SNANKVRVIYW 225
Score = 33.4 bits (76), Expect = 0.35
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 622 QFLRDNLEWLARATNWAKLTATASLGVIH--RGHETEALAHMQSYLPRETGPTSGYYEGG 679
+ + LE L ++++ AT+ LG + +G T +LA MQ +Y
Sbjct: 35 RLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94
Query: 680 GLYALGLIHANHG 692
L I G
Sbjct: 95 SLIQQSEILFAQG 107
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 33.3 bits (76), Expect = 0.15
Identities = 11/77 (14%), Positives = 29/77 (37%)
Query: 912 RKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKK 971
+ E E + ++M+ + K + + K +K +++ +K
Sbjct: 21 KTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKA 80
Query: 972 KKKEAEKMKKKTEEAEK 988
+ E ++ ++ EE K
Sbjct: 81 QAFEQDRARRSNEERGK 97
>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP:
d.201.1.1 PDB: 1kvv_A
Length = 104
Score = 32.4 bits (74), Expect = 0.15
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 939 DAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKK 974
+ K K ++ +K + +++K+++KK KKKKKK
Sbjct: 69 EKRGTKTKLMIELARKIAEIREQKREQKKDKKKKKK 104
Score = 30.5 bits (69), Expect = 0.61
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 935 KKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKK 970
+K+ K+ + A KI + +++K+++KK KKKKKK
Sbjct: 69 EKRGTKTKLMIELARKIAEIREQKREQKKDKKKKKK 104
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 34.3 bits (78), Expect = 0.16
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 903 KKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDA---EKMKKKGAEKIGKKKKKKK 959
+ + + ++ + ++ R + + DA E + E I K
Sbjct: 196 RSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIYTSAHEAIRADPAFKP 255
Query: 960 KKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+KK K++ + K+ + K ++E
Sbjct: 256 TEKKFTKEQYAAESKKY-RQTKLSKEERA 283
Score = 33.9 bits (77), Expect = 0.21
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 1/75 (1%)
Query: 903 KKKKGAEKIRKKKKKKKEAEKMRKK-KGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKK 961
+ + + E + A + K EK K KK ++ K
Sbjct: 218 RFSELFKGYLADDIDADSLEDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKL 277
Query: 962 KKKKKKKKKKKKKEA 976
K+++ + K A
Sbjct: 278 SKEERAARVAAKIAA 292
Score = 33.1 bits (75), Expect = 0.42
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 931 EKMKKKKKDA---EKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
E + +A + K +K K++ + KK ++ K K+++ K +
Sbjct: 237 EDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQ 296
Query: 988 K 988
+
Sbjct: 297 Q 297
>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus}
Length = 176
Score = 33.8 bits (77), Expect = 0.16
Identities = 16/110 (14%), Positives = 30/110 (27%), Gaps = 17/110 (15%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMK------KKKKDAEKMKKKGAE 949
R + + K++G K+K +EA + +++ K +DA K+ K
Sbjct: 61 RTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYH 120
Query: 950 KIGKKKKKKK-----------KKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ K+ K A A
Sbjct: 121 VLYKESKGNAFKHKRALVEHIAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 170
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 138
Score = 33.0 bits (75), Expect = 0.18
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 930 AEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKK 982
+ KK + ++ A K+ K +K+ K++K + KK + KK +A KK
Sbjct: 85 LDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTKAGDAGKK 137
Score = 28.4 bits (63), Expect = 6.0
Identities = 16/65 (24%), Positives = 26/65 (40%)
Query: 924 MRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKT 983
K G + A+K + K K +K +K+ K++K + KK K K
Sbjct: 72 GGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTKA 131
Query: 984 EEAEK 988
+A K
Sbjct: 132 GDAGK 136
Score = 28.4 bits (63), Expect = 6.1
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 917 KKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKK 974
KK E + + G + K + + K K+ K + KK + KK K KKK
Sbjct: 89 KKYEPKYRLIRNG---LATKVEKSRKQMKER-----KNRAKKIRGVKKTKAGDAGKKK 138
>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1c_O 4a1e_O
Length = 185
Score = 33.5 bits (76), Expect = 0.20
Identities = 19/110 (17%), Positives = 33/110 (30%), Gaps = 17/110 (15%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMK------KKKKDAEKMKKKGAE 949
R + K+KG K+K + A K + + +K + A+K+ K
Sbjct: 62 RARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYH 121
Query: 950 KIGKKKKKKK-----------KKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ K K K K K + E + K +
Sbjct: 122 EFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQEARRAKNTASRA 171
Score = 32.3 bits (73), Expect = 0.52
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Query: 898 KRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKK 957
++ R KK + + K K E + K A+K+K + ++
Sbjct: 107 RKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSK--ADKIKSDKLTSQQEARRA 164
Query: 958 KKKKKKKKKKKKKKKKKEAE 977
K + K+ +K + + +
Sbjct: 165 KNTASRAKRNEKAQIVAKVD 184
>3vuu_A Erythrocyte membrane protein, putative; duffy binding-like domain,
erythrocyte binding, merozoite SU malaria, cell
adhesion; 2.09A {Plasmodium falciparum}
Length = 305
Score = 34.0 bits (78), Expect = 0.20
Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 923 KMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKK 982
+ +K +K + + + + KK ++ K+K E + K
Sbjct: 204 EESEKN-MNTLKAVCFPKQPRTEANPALTVHENEMCSSTLKKYEEWYNKRKTEWTEQSIK 262
Score = 34.0 bits (78), Expect = 0.22
Identities = 11/99 (11%), Positives = 26/99 (26%), Gaps = 15/99 (15%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGA--------------EKMKKKKKDAEKMKKKG 947
+ +K ++ K+ + E K+K + + K
Sbjct: 204 EESEKNMNTLKAVCFPKQPRTEANPALTVHENEMCSSTLKKYEEWYNKRKTEWTEQSIKY 263
Query: 948 AEKIGKKKKKKKKKKKKKKKKKKKKKKEAEK-MKKKTEE 985
K + +K + K +K ++ E
Sbjct: 264 NNDKINYTDIKTLSPSEYLIEKCPECKCTKKNLQDVFEL 302
Score = 29.4 bits (66), Expect = 6.5
Identities = 8/74 (10%), Positives = 28/74 (37%)
Query: 915 KKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKK 974
++ +K ++ ++ + + A + + KK ++ K+K + ++ K
Sbjct: 204 EESEKNMNTLKAVCFPKQPRTEANPALTVHENEMCSSTLKKYEEWYNKRKTEWTEQSIKY 263
Query: 975 EAEKMKKKTEEAEK 988
+K+ +
Sbjct: 264 NNDKINYTDIKTLS 277
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone
H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain,
histone deacetylase; HET: M2L; NMR {Saccharomyces
cerevisiae}
Length = 136
Score = 32.8 bits (73), Expect = 0.20
Identities = 2/36 (5%), Positives = 6/36 (16%)
Query: 938 KDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKK 973
E+ + K + +
Sbjct: 101 AYNEENIAMKKRLANEAGSTGSAPATGGVXKPHRYR 136
Score = 32.0 bits (71), Expect = 0.35
Identities = 3/36 (8%), Positives = 6/36 (16%)
Query: 936 KKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKK 971
+ KK K + +
Sbjct: 101 AYNEENIAMKKRLANEAGSTGSAPATGGVXKPHRYR 136
Score = 29.7 bits (65), Expect = 2.2
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 930 AEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKK 970
++++ ++ MKK+ A + G K + +
Sbjct: 96 YDRIRAYNEENIAMKKRLANEAGSTGSAPATGGVXKPHRYR 136
Score = 28.1 bits (61), Expect = 8.2
Identities = 10/103 (9%), Positives = 25/103 (24%), Gaps = 5/103 (4%)
Query: 864 NVATKRLLHVAVSDVNDDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKK---- 919
+ ++K + + + + + I + K
Sbjct: 34 DPSSKMYTSIPNDKPGGSSQATKEIKPQKLGEDESIPEEIINGKSFFIHYQGWKSSWDEW 93
Query: 920 -EAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKK 961
+++R KK+ E A G K + +
Sbjct: 94 VGYDRIRAYNEENIAMKKRLANEAGSTGSAPATGGVXKPHRYR 136
>3bqk_A Pfemp1 protein, erythrocyte membrane protein 1; malaria, pregnancy,
VAR2CSA encoded pfemp1 protein, DBL3X DO chondroitin
sulphate A; 1.80A {Plasmodium falciparum} PDB: 3bqi_A
3bql_A 3cml_A 3cpz_A
Length = 360
Score = 34.2 bits (78), Expect = 0.22
Identities = 12/105 (11%), Positives = 28/105 (26%), Gaps = 18/105 (17%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGAEK------------------MKKKKKDAEKM 943
++ + + IR+ + EK + + + +KK++ +K
Sbjct: 246 IERLRYEQNIREACTINGKNEKKCINSKSGQGDKIQGACKRKCEKYKKYISEKKQEWDKQ 305
Query: 944 KKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K K K K K+ + +
Sbjct: 306 KTKYENKYVGKSASDLLKENYPECISANFDFIFNDNIEYKTYYPY 350
Score = 29.6 bits (66), Expect = 5.0
Identities = 10/71 (14%), Positives = 18/71 (25%), Gaps = 11/71 (15%)
Query: 915 KKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKK 974
+KK+E +K K K K K A + K+ + +
Sbjct: 296 SEKKQEWDKQ-----------KTKYENKYVGKSASDLLKENYPECISANFDFIFNDNIEY 344
Query: 975 EAEKMKKKTEE 985
+
Sbjct: 345 KTYYPYGDYSS 355
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 34.0 bits (78), Expect = 0.23
Identities = 8/30 (26%), Positives = 22/30 (73%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKK 982
+ +K+++ ++K ++ K K+K E E+++K+
Sbjct: 311 ENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.8 bits (75), Expect = 0.57
Identities = 8/30 (26%), Positives = 21/30 (70%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKK 982
K+ +K+++ ++K ++ K K++AEK + +
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAEKERLE 338
Score = 32.4 bits (74), Expect = 0.73
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 938 KDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKK 972
A K +K E K ++ K K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.4 bits (74), Expect = 0.73
Identities = 8/45 (17%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 930 AEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKK 974
+ K+ +K ++ ++K ++ K K+K +K++ +K+
Sbjct: 302 RNMFLQAVKENQKRRET------EEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.9 bits (70), Expect = 2.3
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKK 928
+K+++ EK+R+ K K++AEK R +K
Sbjct: 313 QKRRETEEKMRRAKLAKEKAEKERLEK 339
Score = 30.5 bits (69), Expect = 3.1
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 898 KRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEK 932
+ ++ +K E K ++ K EK K++ ++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.1 bits (68), Expect = 3.6
Identities = 6/31 (19%), Positives = 20/31 (64%)
Query: 955 KKKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
K+ +K+++ ++K ++ K + + K++ E+
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAEKERLEK 339
Score = 29.3 bits (66), Expect = 7.1
Identities = 6/30 (20%), Positives = 19/30 (63%)
Query: 949 EKIGKKKKKKKKKKKKKKKKKKKKKKEAEK 978
E +++ ++K ++ K K+K +K++ ++
Sbjct: 311 ENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right
handed coiled-coil, ATPase/SY ATP binding, membrane,
hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E
3j0j_J
Length = 187
Score = 33.0 bits (75), Expect = 0.25
Identities = 14/112 (12%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 876 SDVNDDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKK 935
S + + +E + +L ++ + AE ++++ ++K +A +++ E
Sbjct: 1 SKLEAILSQEVEAEIQALL-------QEAEAKAEAVKREAEEKAKALLQARERALE---- 49
Query: 936 KKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
+ A + + A ++ + + + + ++ +++ ++ E + +K E E
Sbjct: 50 AQYRAALRRAESAGELLVATARTQARGEVLEEVRRRVREALEALPQKPEWPE 101
Score = 29.1 bits (65), Expect = 5.4
Identities = 8/81 (9%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 909 EKIRKKKKK-KKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKK 967
+++ + + +EAE + E +K K + ++ E + ++ + +
Sbjct: 9 QEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERA-LEAQYRAALRRAESAGELLV 67
Query: 968 KKKKKKKEAEKMKKKTEEAEK 988
+ + E +++ +
Sbjct: 68 ATARTQARGEVLEEVRRRVRE 88
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD,
WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Length = 195
Score = 33.3 bits (75), Expect = 0.26
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 939 DAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
+ + KG K K K +K KKK+ K + KE + + E+
Sbjct: 148 EGQMYPGKGGGSKEKNKTKPEKAKKKEGDPKPRASKEDNRAGSRRED 194
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 33.3 bits (77), Expect = 0.26
Identities = 9/45 (20%), Positives = 23/45 (51%)
Query: 931 EKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKE 975
K + ++ E+ + EK + ++++++KK K KK ++
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
Score = 29.5 bits (67), Expect = 4.5
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 922 EKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKK 967
K + + ++ K+ ++ A ++++KK K KK +K
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal
rearrangement, DNA-binding, nucleus, phosphorylation,
proto oncogene; NMR {Homo sapiens}
Length = 131
Score = 32.2 bits (73), Expect = 0.27
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 13/106 (12%)
Query: 883 RREAVTALGFILFRKKRTRRKKKKG---------AEKIRKKKKKKKEAEKMRKKKGAEKM 933
+ + + L +L+ + T KK + + KKK++ +K R
Sbjct: 25 KTDELRNLHKLLYNRPGTVSSLKKNVGQFSGFPFEKGSVQYKKKEEMLKKFRNAMLKSIC 84
Query: 934 K----KKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKE 975
+ ++ ++ K+ + K K K KK K KKE
Sbjct: 85 EVLDLERSGVNSELVKRILNFLMHPKPSGKPLPKSKKTCSKGSKKE 130
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_X 2go5_4 2j37_4
Length = 152
Score = 32.5 bits (74), Expect = 0.27
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 940 AEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKK 973
A K K A+ ++ K K K K+K KK
Sbjct: 2 APKAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 32.5 bits (74), Expect = 0.29
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKK 982
KK K ++ K K K + K K K
Sbjct: 5 AAVKKADGKTQQALKVAKAVKSGSIKRKSK 34
Score = 32.5 bits (74), Expect = 0.31
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 943 MKKKGAEKIGKKKKKKKKKKKKKKKK---KKKKKK 974
M K A K K ++ K K K K+K KK
Sbjct: 1 MAPKAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 32.1 bits (73), Expect = 0.35
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 952 GKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKT 983
KK K ++ K K K ++ KK
Sbjct: 5 AAVKKADGKTQQALKVAKAVKSGSIKRKSKKI 36
Score = 31.8 bits (72), Expect = 0.47
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 948 AEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
A K KK K ++ K K K K KK
Sbjct: 2 APKAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 30.2 bits (68), Expect = 1.8
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 930 AEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKK 963
A K KK D + + K K K+K KK
Sbjct: 2 APKAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 29.1 bits (65), Expect = 4.7
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 924 MRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKK 958
M K +K K + A K+ K K+K KK
Sbjct: 1 MAPKAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 33.8 bits (78), Expect = 0.30
Identities = 17/131 (12%), Positives = 38/131 (29%), Gaps = 16/131 (12%)
Query: 870 LLHVAVSDVNDDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKG 929
L + + +D+ + T +K +K + ++ +M +
Sbjct: 489 LHTIEEAYTIEDIEAGSDTKTV----KKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDK 544
Query: 930 AEKMKKKKK-DAE----KMKKKGAEKIGKKKKKKKKKKKKKKKKKKKK-------KKEAE 977
+ +K E ++ K E+ +K K + K ++
Sbjct: 545 LVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKA 604
Query: 978 KMKKKTEEAEK 988
K K EE
Sbjct: 605 KYIAKYEELAS 615
>3rj1_C Mediator of RNA polymerase II transcription subun; RNA polymeras
II, POL II, head module, head, regulator, helical
bundle; 4.30A {Saccharomyces cerevisiae}
Length = 223
Score = 33.0 bits (74), Expect = 0.32
Identities = 22/178 (12%), Positives = 57/178 (32%), Gaps = 14/178 (7%)
Query: 156 TPDTEAPTPAPGTESGPSSTTPGP-ETKTLESLNEKEKQLQARITKLSKILSGEVS---I 211
+ + P G+ S + L+++ + QL + ++ +S
Sbjct: 4 STASLVPEGNQGSLQEDVSFDFNGVPGQALDAVRMRLAQLTHSLRRIRDEMSKAELPQWY 63
Query: 212 DLHLQFLIRSNKTDML--ILKNTKESIRVSICHTATIIANAFMHSGTTSDQFLRDNL--- 266
L Q + ++ + L++ +E++ ++ + H + LR
Sbjct: 64 TLQSQLNVTLSQLVSVTSTLQHFQETLDSTVVYPLPKFPTT-SHESLVT-TLLRKKNIPE 121
Query: 267 --EWLARATNWAKLTATASLGVIHRGHETEALAHMQSYLPRETGPTSGYYEGGGLYAL 322
EW+ + +T TA L + + ++ G ++ +L
Sbjct: 122 VDEWMKYVRETSGVT-TALLKDEEIEKLLQQDREITNWARTTFRNEYGKHDFKNEESL 178
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 33.3 bits (75), Expect = 0.34
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 918 KKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAE 977
K ++ K+ K+ K+ + K K KK K+ + KK KE +
Sbjct: 120 KNWQKEAFHKQMMGGFKETKEAEDGF-----RKAQKPWAKKLKEVEAAKKAHHAACKEEK 174
Query: 978 KMKKKTEEAEK 988
+ ++
Sbjct: 175 LAISREANSKA 185
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain,
coiled-coil domain, DNA and cleavage, nucleus; HET: DNA
EVP; 2.16A {Homo sapiens}
Length = 803
Score = 34.0 bits (77), Expect = 0.34
Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 24/101 (23%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKK----------- 957
KI + + KK+ +M ++G E K + K ++ +
Sbjct: 659 GKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGP 718
Query: 958 -------------KKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
K+K ++ K++ K +E +K+K+
Sbjct: 719 DFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPS 759
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 33.7 bits (76), Expect = 0.35
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
R+++ R K A + + K GAE+ +K A +KK K KKK
Sbjct: 360 RRRQQRESKSNAATPTKGPEGKVAGPADAPMDSGAEE---EKAGAATVKKPSPSKARKKK 416
Query: 956 KKKKKKKKKKKKKKKKKKKEA 976
KK +K +K+ + KK
Sbjct: 417 LNKKGRKMAGRKRGRPKKMNT 437
Score = 29.8 bits (66), Expect = 4.7
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 895 FRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMK-----KKGAE 949
+ K ++ E R++++++ ++ KG E DA K GA
Sbjct: 343 YFSSLKNPKLREEQEAARRRQQRESKSNAATPTKGPEGKVAGPADAPMDSGAEEEKAGAA 402
Query: 950 KIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKT 983
+ K K +KKK KK +K ++ + KK
Sbjct: 403 TVKKPSPSKARKKKLNKKGRKMAGRKRGRPKKMN 436
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding
protein; NMR {Homo sapiens} SCOP: a.21.1.1
Length = 99
Score = 31.2 bits (71), Expect = 0.36
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 909 EKIRKKKKKKKEAEKMRK-----KKGAEKMKKK-KKDAEKMKKKGAEKIGKKKKKKKKKK 962
K K + + + K+ EK K K +D ++ K++ + + ++
Sbjct: 27 AKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLI 86
Query: 963 KKKKKKKKKKKK 974
+ KK +
Sbjct: 87 QNAKKLEHHHHH 98
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB:
1fxk_B
Length = 107
Score = 31.4 bits (71), Expect = 0.40
Identities = 17/78 (21%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 915 KKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKK----KKK 970
+K+ E + +K E++ + DAE K G I K + ++ ++K + ++K
Sbjct: 23 QKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREK 82
Query: 971 KKKKEAEKMKKKTEEAEK 988
+++ E++ KK +E +
Sbjct: 83 TIERQEERVMKKLQEMQV 100
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A
{Danio rerio} PDB: 2c2v_S 2oxq_C
Length = 179
Score = 32.3 bits (73), Expect = 0.42
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 908 AEKIRKKKKKKKEA-EKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKK 966
+R KKK+ + E+ R + E K K++ + K+ + K
Sbjct: 16 PSALRIAKKKRWNSIEEKRISQENELHAYLSKLILAEKERELDDRVKQSDDSQNGGDISK 75
Query: 967 KKKK--KKKKEAEKMKKKTEEAEK 988
K K K + +++ + +E K
Sbjct: 76 MKSKHDKYLMDMDELFSQVDEKRK 99
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_C*
Length = 1342
Score = 33.5 bits (77), Expect = 0.42
Identities = 12/89 (13%), Positives = 36/89 (40%)
Query: 900 TRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKK 959
TR +K + ++ + K+A+K ++ + G + K K +
Sbjct: 935 TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994
Query: 960 KKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ + ++K+ + E++ ++ +E +
Sbjct: 995 DRWLELGLTDEEKQNQLEQLAEQYDELKH 1023
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 33.3 bits (75), Expect = 0.44
Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 6/132 (4%)
Query: 863 SNVATKRLLHVAVSDVNDDVRREAVTALGFILFRKKRTRRKKK----KGAEKIRKKKKKK 918
+ VA L + + VRR L + + K E K
Sbjct: 538 NKVAVFNLPDLNNLAITSFVRRNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFN 597
Query: 919 KEAEKMRKKKGAEKMKKKKKDAEKM--KKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEA 976
K + + +++KK +KD EK K++ EK +KK + K K K + K + +
Sbjct: 598 KAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQK 657
Query: 977 EKMKKKTEEAEK 988
+++ +
Sbjct: 658 DEIFALINKEAN 669
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein,
hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Length = 138
Score = 31.9 bits (72), Expect = 0.45
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 145 KVPVEGAPTPATPDTEAPTPAPGTESGPSSTTPGP 179
K+ + AT P+ +P + P P P
Sbjct: 101 KLSINVVAANATVSMPPPSSSPPSSVMPPPVMPPP 135
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 33.4 bits (77), Expect = 0.48
Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 16/86 (18%)
Query: 918 KKEAEKMRK--KKGAEKMKKKKK-------------DAEKMKKKGAEKIGKKKKKKKKKK 962
+ E +KM + + AE +K + K ++ +K+ K +
Sbjct: 509 EDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPA-DDKTAIES 567
Query: 963 KKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ K ++ ++ K +E +
Sbjct: 568 ALTALETALKGEDKAAIEAKMQELAQ 593
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP,
IST1, coiled coil, cytoplasm, lipoprotein, membrane,
myristate, phosphoprotein; 4.00A {Homo sapiens}
Length = 218
Score = 32.5 bits (73), Expect = 0.50
Identities = 13/87 (14%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 903 KKKKGAEKIRKKKKKKKEAEKM--RKKKGAEKMKKK-KKDAEKMKKKGAEKIGKKKKKKK 959
++K E + + K ++ ++ R+ + ++ ++K K+ + KKG + + K+
Sbjct: 4 QEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEM 63
Query: 960 KKKKKKKKKKKKKKKEAEKMKKKTEEA 986
+ +K K K + +
Sbjct: 64 IRSRKAVSKLYASKAHMNSVLMGMKNQ 90
Score = 30.9 bits (69), Expect = 1.4
Identities = 11/71 (15%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 914 KKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKK 973
++K E + + K++K+ + ++ + ++ +K K+ K KK +K
Sbjct: 2 HMQEKPPKELVNEWS--LKIRKEMRVVDRQIRD-IQREEEKVKRSVKDAAKKGQKDVCIV 58
Query: 974 KEAEKMKKKTE 984
E ++ +
Sbjct: 59 LAKEMIRSRKA 69
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal
toxic shock S; 3.30A {Streptococcus pyogenes}
Length = 146
Score = 31.8 bits (71), Expect = 0.52
Identities = 15/92 (16%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
+ + + ++ + +E E R G K++ + +EK ++ EK K
Sbjct: 50 AIDQASQDYNRANVLEKELEAITREQEINRNLLGNAKLELDQLSSEK-EQLTIEK---AK 105
Query: 956 KKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
+++K+ ++ ++ +A + KK E +
Sbjct: 106 LEEEKQISDASRQSLRRDLDASREAKKQVEKD 137
>2lhj_A High mobility group protein homolog NHP1; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; NMR {Babesia bovis}
Length = 97
Score = 30.8 bits (70), Expect = 0.53
Identities = 10/93 (10%), Positives = 34/93 (36%), Gaps = 14/93 (15%)
Query: 904 KKKGAEKIRKKKKKKKEAEKMRKKKGA---------EKMKKKKKDAEKMKKKGAEKIGKK 954
+R+ +K KK+ ++ + ++ + + K + IG
Sbjct: 3 GASDRTGVRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAA 62
Query: 955 -----KKKKKKKKKKKKKKKKKKKKEAEKMKKK 982
++KK ++ + + + ++E + ++
Sbjct: 63 WNALSDEEKKPYERMSDEDRVRYEREKAEYAQR 95
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 32.3 bits (73), Expect = 0.53
Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 19/107 (17%)
Query: 894 LFRKKRTRR------KKKKGAEKIRKKKKKKKEAEK------MRKKKGAEKM--KKKKKD 939
LF+K R+ KK G K +K + E +R G K+ K+
Sbjct: 35 LFQKCRSSGSVFITLKKYDGRTKPIPRKSSVEGLEPAENKCLLRATDGKRKISTVVSSKE 94
Query: 940 AEKMKKKGAEKI-----GKKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
K + + + G KK+ KK K KK K + ++K +
Sbjct: 95 VNKFQMAYSNLLRANMDGLKKRDKKNKSKKSKPAQGGEQKLISEEDD 141
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
3.30A {Homo sapiens} SCOP: h.1.25.2
Length = 180
Score = 31.9 bits (72), Expect = 0.57
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 913 KKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKK---------KK 963
K K E + +K + K K+ + + A+ + + + K K+
Sbjct: 87 KVTKNITEIADLTQKI-FDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQ 145
Query: 964 KKKKKKKKKKKEAEKMKKKTEE 985
KK+ +K+ +E +K +
Sbjct: 146 VKKEDTEKENREVGDWRKNIDA 167
Score = 31.9 bits (72), Expect = 0.58
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEKMKKK---KKDAEKMKKKGAEKIGKKKKKKKKKKKKK 965
+KI + K K R + A+ M + + E + + K KK+ +K+ ++
Sbjct: 100 QKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDTEKENREVG 159
Query: 966 KKKKKKKKKEAEKMKKKTEEA 986
+K + +KK E+
Sbjct: 160 DWRKNIDALSGMEGRKKKFES 180
Score = 30.3 bits (68), Expect = 1.8
Identities = 13/74 (17%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 897 KKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKK 956
K+ T R+ + A+ + + + E + + +++KK+ + E ++G +K
Sbjct: 110 KRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDTEKEN------REVGDWRK 163
Query: 957 KKKKKKKKKKKKKK 970
+ +KKK
Sbjct: 164 NIDALSGMEGRKKK 177
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 32.8 bits (75), Expect = 0.60
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 949 EKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
++ + +K +KKKKKK K +T E +
Sbjct: 359 AELKALLQSSASRKTQKKKKKKASKTAENATSGETLEENE 398
Score = 31.7 bits (72), Expect = 1.2
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 935 KKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMK 980
+ +DAE +K +K +KKKKKK K + + E+ +
Sbjct: 354 MEVQDAE-LKALLQSSASRKTQKKKKKKASKTAENATSGETLEENE 398
Score = 30.5 bits (69), Expect = 2.8
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 955 KKKKKKKKKKKKKKKKKKKKEAEKMKKKTE 984
+K +KKKKKK K + E +++
Sbjct: 370 SRKTQKKKKKKASKTAENATSGETLEENEA 399
Score = 30.5 bits (69), Expect = 3.2
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 950 KIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
+ + +K +KKKKKK K + + EA
Sbjct: 363 ALLQSSASRKTQKKKKKKASKTAENATSGETLEENEA 399
Score = 29.7 bits (67), Expect = 4.9
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
+K +KKKKKK K + + + ++ E +
Sbjct: 367 SSASRKTQKKKKKKASKTAENATSGETLEENEAGD 401
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 32.5 bits (73), Expect = 0.60
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 150 GAPTPATPDTEAP-TPAPGTESGPSSTTPGPET 181
G P P + T P P PG+ + P P +
Sbjct: 323 GRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGS 355
Score = 31.8 bits (71), Expect = 1.3
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 150 GAPTPATPDTEAPTPAPGTESGPSSTTPGP 179
G P P + T + + P S+ G
Sbjct: 349 GRPEPGSAGTWNTGSSGSSSFRPDSSGHGN 378
Score = 31.4 bits (70), Expect = 1.5
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 150 GAPTPATPDTEAP-TPAPGTESGPSSTTPGPET 181
G P P + T P P PG+ + P P +
Sbjct: 297 GRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGS 329
Score = 31.0 bits (69), Expect = 2.4
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 150 GAPTPATPDTEAPTPAPGTESGPSSTTPGP 179
G P P+ + SG SS P
Sbjct: 344 GTWNPGRPEPGSAGTWNTGSSGSSSFRPDS 373
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 156
Score = 31.8 bits (72), Expect = 0.60
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 921 AEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKK--------KKKKKKKKKKKKKK 972
A K +K+ A + K A K KK + + KKKK + K + +++ K
Sbjct: 2 APKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYP 61
Query: 973 KKEAEKMKKK 982
+K A + K
Sbjct: 62 RKSAPRRNKL 71
Score = 28.3 bits (63), Expect = 8.6
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 943 MKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
M K ++ K + K K K KK K + K KK
Sbjct: 1 MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKK 39
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 31.8 bits (72), Expect = 0.62
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 944 KKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
K+K + KK+ KK + A+++
Sbjct: 159 KRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQLAA 196
Score = 31.1 bits (70), Expect = 1.1
Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 17/109 (15%)
Query: 897 KKRTRRKKKKGAEKIRK--------------KKKKKKEAEKMRKKKGAEKMKKKKKDAEK 942
+ K +G + + K+ +A ++ + K K K +
Sbjct: 85 RGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTS 144
Query: 943 MKKKGAEKIGKKKKKKKKKKK---KKKKKKKKKKKEAEKMKKKTEEAEK 988
+ K + + K + K+K KK+ KK A +++ A++
Sbjct: 145 VGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD,
protein binding; HET: MSE; 1.85A {Mus musculus}
Length = 253
Score = 32.1 bits (72), Expect = 0.65
Identities = 22/139 (15%), Positives = 58/139 (41%), Gaps = 7/139 (5%)
Query: 855 AMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKK 914
+ A +++ +A + RE +AL + R + K ++ + +
Sbjct: 49 TTVVAAAAFLDAFQKVADMATNTRGGT--REIGSALTRMCMRHRSIEAKLRQFSSALIDC 106
Query: 915 -----KKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKK 969
+++ +E +K+ + + K+ KK +++KKK ++ + +KK KK + + +
Sbjct: 107 LINPLQEQMEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQ 166
Query: 970 KKKKKEAEKMKKKTEEAEK 988
+ + + K E+
Sbjct: 167 PQLDSALQDVNDKYLLLEE 185
Score = 31.7 bits (71), Expect = 1.1
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 904 KKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKK 963
+++ E + + K+ K KK E +KKK D K++KK + + + + +
Sbjct: 112 QEQMEEWKKVANQLDKDHAKEYKKARQE-IKKKSSDTLKLQKKAKKVDAQGRGDIQPQLD 170
Query: 964 KKKKKKKKKKKEAEKMKKKT 983
+ K E+ +K+
Sbjct: 171 SALQDVNDKYLLLEETEKQA 190
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 32.7 bits (75), Expect = 0.67
Identities = 15/84 (17%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKK------KKK 962
E ++ + ++ + +K A+++ K+ + + K G ++ KK++ K +
Sbjct: 353 ETAQEHNENDQQIREGLEK--AQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW 410
Query: 963 KKKKKKKKKKKKEAEKMKKKTEEA 986
+ +++KK+AEK A
Sbjct: 411 HPDNFQNEEEKKKAEKKFIDIAAA 434
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory
protein, transcription; 3.00A {Escherichia coli}
Length = 228
Score = 31.9 bits (73), Expect = 0.70
Identities = 12/98 (12%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEA-EKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKK 954
+ KR ++ ++ +K ++ + E + + +AEK+ K ++ +
Sbjct: 112 KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL 171
Query: 955 KKKKKKKKKK----KKKKKKKKKKEAEKMKKKTEEAEK 988
++K+ + ++ + K + +K++ K + +
Sbjct: 172 GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 209
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 32.3 bits (73), Expect = 0.75
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 6/93 (6%)
Query: 880 DDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKD 939
D+ + V LG+ +K + G + + + E + + + +
Sbjct: 275 DEFAEQLVEELGWQEDFEKILTAQGGMGDNSKEQLLEIVHDLENLSLD------QSEHES 328
Query: 940 AEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKK 972
A+K KK G + +K K+
Sbjct: 329 ADKKDKKLQRLNGHDSDEDGASNSSSSQKAAKE 361
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 32.7 bits (74), Expect = 0.75
Identities = 9/99 (9%), Positives = 27/99 (27%), Gaps = 4/99 (4%)
Query: 894 LFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGK 953
+ K K K ++ + + + K K + G++
Sbjct: 104 ILECVCWNCGKLKIDSSNPKFNDTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDL 163
Query: 954 KKKKKKKKKKKKKKKKKKKKKEAEKM----KKKTEEAEK 988
+ +K+ ++ K+ +E++
Sbjct: 164 SNPSANMGHGGCGAAQPTIRKDGLRLWGSWKRGKDESDL 202
>3pqu_A Transferrin binding protein B; lipoprotein, transferrin receptor,
iron acquisition, vaccine candidate, beta-barrel,
outermembrane; 2.10A {Actinobacillus suis}
Length = 570
Score = 32.6 bits (73), Expect = 0.76
Identities = 13/79 (16%), Positives = 24/79 (30%)
Query: 889 ALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGA 948
LG +R R K + + +E E + + E K +
Sbjct: 41 TLGVEAKIPRRNRALFDKEGNRKATPDTTDELSEAQIMAIWNENIDEIPHLKELNDKTTS 100
Query: 949 EKIGKKKKKKKKKKKKKKK 967
I K++ KK+ +
Sbjct: 101 GLIYHSHDGKQEDKKRNLQ 119
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 32.6 bits (75), Expect = 0.77
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 948 AEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
K KKK + K+K++ E MKK+ E +
Sbjct: 14 LGPGPSGDMAAKMSKKKAGRGGGKRKEKLENMKKEMEIND 53
Score = 29.5 bits (67), Expect = 7.5
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 901 RRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKK 945
+ + + + A KM KKK K+K+ E MKK
Sbjct: 3 KAENYELYQVELGPGPSGDMAAKMSKKKAGRGGGKRKEKLENMKK 47
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_4
Length = 265
Score = 32.1 bits (72), Expect = 0.77
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 958 KKKKKKKKKKKKKKKKKEAEKMKKK 982
K K KK KK+ + + +K
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSRK 29
Score = 31.3 bits (70), Expect = 1.5
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 951 IGKKKKKKKKKKKKKKKKKKK---KKKE 975
GK K KK KK+ +KE
Sbjct: 3 QGKNPGLKAGGGKKGAKKRTIDPLSRKE 30
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP,
pseudouridine synthase, guide RNA, isomerase
biosynthetic protein-RNA complex; HET: ATP; 2.30A
{Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Length = 104
Score = 30.4 bits (68), Expect = 0.80
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 937 KKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEK 978
K + E + ++K+K+ KK K+K+ KKKK +
Sbjct: 63 KPKVSNPEIYVGEVLYVDERKRKESPKKNKEKRMKKKKRLNR 104
Score = 27.3 bits (60), Expect = 9.1
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 951 IGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKK 982
+G+ ++K+K+ KK K+K+ + +K +
Sbjct: 73 VGEVLYVDERKRKESPKKNKEKRMKKKKRLNR 104
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group
protein 2A, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 86
Score = 30.0 bits (68), Expect = 0.80
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 912 RKKKKKKKEAEKMRKKKGA---------EKMKKKKKDAEKMKKKGAEKIGKK-KKKKKKK 961
K + +K + K A E+ KKK + + ++K ++ K K+
Sbjct: 4 GSSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKE 63
Query: 962 KKKKKKKKKKKKKEAEKMKKK 982
K K + K K ++ K
Sbjct: 64 KSKFDEMAKADKVRYDREMKD 84
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila}
Length = 185
Score = 31.6 bits (71), Expect = 0.83
Identities = 12/98 (12%), Positives = 36/98 (36%), Gaps = 10/98 (10%)
Query: 875 VSDVNDDVRREAVTAL---GFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAE 931
S+++ R ++ L G + ++ + R + + + + G
Sbjct: 29 SSEISMANSRASIRKLIKDGLV-------MKRSTVIHSRSRARAFLEAKRKGRHTGSGKR 81
Query: 932 KMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKK 969
K + + K+ +++ ++ +K + KK K +
Sbjct: 82 KGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQ 119
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 32.4 bits (74), Expect = 0.88
Identities = 5/46 (10%), Positives = 13/46 (28%)
Query: 942 KMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
+++K A K K K ++ + + +
Sbjct: 307 RLRKTQAIPALPAPKYKVGNFPFSPVKDREAGQIRQAATGVGLNWD 352
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_N
Length = 134
Score = 30.7 bits (69), Expect = 0.89
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Query: 923 KMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKK-----------KKKKKKKK 971
+++ + K ++A+ K GKK +K++ K K+
Sbjct: 61 DIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGA 120
Query: 972 KKKEAEKMKKKT 983
++E K+KK
Sbjct: 121 IRQELAKLKKTA 132
Score = 28.8 bits (64), Expect = 4.9
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 897 KKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKK 956
+ K+ + K ++ K +K+ +K+ A + K+ K
Sbjct: 57 DIKIDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRA-SLNDFDRFKVMLAKI 115
Query: 957 KKKKKKKKKKKKKKKKKK 974
K+ +++ K KK
Sbjct: 116 KRGGAIRQELAKLKKTAA 133
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 31.5 bits (71), Expect = 0.89
Identities = 10/89 (11%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 897 KKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKK 956
+ ++ ++ E I + +++ E K ++ AE K + + K ++ K++
Sbjct: 8 IQEINKEAERKIEYILNEARQQAEKIKEEARRNAEA----KAEWIIRRAKTQAELEKQRI 63
Query: 957 KKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
+ + ++K+ +++ + ++ +
Sbjct: 64 IANARLEVRRKRLAIQEEIISSVLEEVKR 92
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Length = 182
Score = 31.4 bits (71), Expect = 0.95
Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 897 KKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKK 956
K+ R+ + A+ + + K M + +++KK+ + EK +G +K
Sbjct: 107 KRPPLRRVRMSADAMLRALLGSKHKVNMDLRANLKQVKKEDTEKEKDL----RDVGDWRK 162
Query: 957 KKKKKKKKKKKKKKKKKKEA 976
++K + +KK + E+
Sbjct: 163 NIEEKSGMEGRKKMFEAGES 182
Score = 29.9 bits (67), Expect = 2.8
Identities = 15/73 (20%), Positives = 29/73 (39%)
Query: 913 KKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKK 972
K +K KE E + +K + K K+ +++ + K K + K+
Sbjct: 84 KLQKTNKELEDLSQKLFDLRGKFKRPPLRRVRMSADAMLRALLGSKHKVNMDLRANLKQV 143
Query: 973 KKEAEKMKKKTEE 985
KKE + +K +
Sbjct: 144 KKEDTEKEKDLRD 156
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Length = 135
Score = 30.7 bits (69), Expect = 1.0
Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 930 AEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKK--KKKKEAEKMKKKTE 984
+ KK + ++ AEK+ K ++++K+KK + KK K+ + ++ +
Sbjct: 79 VAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRNAD 135
Score = 29.5 bits (66), Expect = 2.2
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 917 KKKEAEKMRKKKG-AEKMKKKKKDAEKMKKKGAEKI-GKKKKKKKKKKKKK 965
KK E + G AEK++K + K KK +KI G K+ KK ++
Sbjct: 83 KKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRN 133
Score = 28.8 bits (64), Expect = 3.9
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 920 EAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKE 975
+ KK + AEK++K ++ +KK + KK K+ KK +
Sbjct: 77 NSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARR 132
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning,
protein-DNA complex, heilx-turn- helix motif,
transcription factor; HET: BRU; 2.20A {Escherichia coli}
SCOP: a.4.14.1
Length = 178
Score = 31.0 bits (70), Expect = 1.0
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 10/66 (15%)
Query: 900 TRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKK 959
TR K E + +K + + + DAE+ + G + G+ +
Sbjct: 123 TRGTVKLLREFLDEKGRDPNTVDA----------FNGQTDAERDAEAGDGQDGEDGDQDG 172
Query: 960 KKKKKK 965
K K+K
Sbjct: 173 KDAKEK 178
Score = 29.1 bits (65), Expect = 4.5
Identities = 9/64 (14%), Positives = 17/64 (26%), Gaps = 1/64 (1%)
Query: 904 KKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKK 963
E R K +E K + + + + A + + K
Sbjct: 116 DDDTQEITRGTVKLLREFLD-EKGRDPNTVDAFNGQTDAERDAEAGDGQDGEDGDQDGKD 174
Query: 964 KKKK 967
K+K
Sbjct: 175 AKEK 178
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 32.3 bits (73), Expect = 1.1
Identities = 15/108 (13%), Positives = 38/108 (35%), Gaps = 9/108 (8%)
Query: 881 DVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDA 940
VR E KR ++ ++ K + K + + +K+ K +
Sbjct: 579 YVRLEYYQ---------KRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAII 629
Query: 941 EKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
++++ G + K+ K + ++ K A ++ E + +
Sbjct: 630 QELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHE 677
Score = 31.1 bits (70), Expect = 2.5
Identities = 17/114 (14%), Positives = 43/114 (37%), Gaps = 2/114 (1%)
Query: 874 AVSDVNDDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKM 933
V++ + + + LGF F K+ E + K ++ + +
Sbjct: 619 TVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHED 678
Query: 934 KKKKKDAEKMKKKGAEKIGKKK--KKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
+ + + E + + K++ +K K+K++K+ E E + K + +
Sbjct: 679 TENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAK 732
>2ld3_A Myosin VI; molecular motor, lever arm extension, motor prote; NMR
{Mus musculus}
Length = 88
Score = 29.7 bits (66), Expect = 1.1
Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 906 KGAEKIRKKKKKKKEAEKMRK-----KKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKK 960
+G + K KK +K + K G ++ ++ K+ E KI +++
Sbjct: 1 QGPGSLVKVGTLKKRLDKFNEVVSALKDGKPEVNRQIKNLEISIDALMAKIKSTMMTREQ 60
Query: 961 KKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+K+ K + ++KK ++ E+
Sbjct: 61 IQKEYDALVKSSEDLLSALQKKKQQEEE 88
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY
structure, peptidyl-transferase, peptide bond formation;
3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB:
1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I
1vou_I 1vow_I 1voy_I 1vp0_I
Length = 146
Score = 30.6 bits (70), Expect = 1.2
Identities = 5/44 (11%), Positives = 16/44 (36%)
Query: 944 KKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
+ K + + + +K++ ++K AE + +
Sbjct: 32 QGLAVSATRTNMKTLEAQLRSIEKRQAQEKAVAEDLASRLNGVA 75
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 31.9 bits (72), Expect = 1.2
Identities = 7/37 (18%), Positives = 10/37 (27%)
Query: 147 PVEGAPTPATPDTEAPTPAPGTESGPSSTTPGPETKT 183
A + TPAP + P P+
Sbjct: 10 TPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNK 46
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F
1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F
2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F*
2vho_F ...
Length = 135
Score = 30.4 bits (69), Expect = 1.2
Identities = 6/44 (13%), Positives = 16/44 (36%)
Query: 942 KMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
+ K E K K ++++++ + ++ EE
Sbjct: 91 RTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEEEEE 134
Score = 29.6 bits (67), Expect = 2.0
Identities = 6/44 (13%), Positives = 17/44 (38%)
Query: 932 KMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKE 975
+ K +A M K E+ ++ + + ++++E
Sbjct: 91 RTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEEEEE 134
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 145
Score = 30.4 bits (68), Expect = 1.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 950 KIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
K+ K +KK ++K K ++ K+K K E+ +K +E
Sbjct: 110 KLDKDRKKILERKAKSRQVGKEKGKYKEETIEKMQE 145
Score = 28.1 bits (62), Expect = 8.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRK 926
RKK RK K K K K++ EKM++
Sbjct: 115 RKKILERKAKSRQVGKEKGKYKEETIEKMQE 145
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 31.9 bits (73), Expect = 1.3
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 936 KKKDAEKM-KKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMK 980
+ +K K E+I +K + + K+ K KKK K K+
Sbjct: 727 DLSNFQKGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHHH 772
Score = 29.2 bits (66), Expect = 8.2
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKD 939
+ K E+I++K + E ++ + KK ++ KK
Sbjct: 728 LSNFQKGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHH 771
>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I
2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I
3i8f_K 3i8i_K 3i9c_K 3i9e_K ...
Length = 148
Score = 30.6 bits (70), Expect = 1.3
Identities = 8/44 (18%), Positives = 19/44 (43%)
Query: 944 KKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
+ K + + + + K+ ++K EAE++K+ E
Sbjct: 33 RGLAVLATESNLKALEARIRAQAKRLAERKAEAERLKEILENLT 76
>3iz5_C 60S ribosomal protein L3 (L3P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_C
Length = 389
Score = 31.7 bits (71), Expect = 1.3
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 908 AEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKK----K 963
A+ + + +++ + KK A K D++ KK+ ++ K KK +
Sbjct: 107 AQHLSEDVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIVRVIAHT 166
Query: 964 KKKKKKKKKKKEAEKMKKKTEEAE 987
+ +K K K+K+A M+ +
Sbjct: 167 QIRKMKGLKQKKAHLMEIQVNGGT 190
Score = 29.7 bits (66), Expect = 5.2
Identities = 15/73 (20%), Positives = 25/73 (34%)
Query: 894 LFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGK 953
+ R+ K K + K +A K + EKMKK + K+
Sbjct: 114 VRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIVRVIAHTQIRKMKG 173
Query: 954 KKKKKKKKKKKKK 966
K+KK + +
Sbjct: 174 LKQKKAHLMEIQV 186
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 29.3 bits (66), Expect = 1.3
Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 891 GFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEK 950
LF + R + K + + E + EK+K ++K A K ++ +
Sbjct: 14 ASALFVQDH-RPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEK-ATKDLERYNSQ 71
Query: 951 IGKKKKKKKKKKKKKKKKK 969
+ + +++ + K
Sbjct: 72 MKRAIEQESQMSLKDSGPS 90
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis,
apoptosis, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 134
Score = 30.1 bits (67), Expect = 1.4
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 917 KKKEAEKMRKKKGAEKMK----KKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKK 972
K +E R + A ++K +D E +KK+ + + K+K + + KKK
Sbjct: 70 KNREELGFRPEYSASQLKGFSLLATEDKEALKKQ-LPGVKSEGKRKGDEVDGVDEVAKKK 128
Query: 973 KKEAE 977
+
Sbjct: 129 SGPSS 133
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 30.7 bits (69), Expect = 1.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 944 KKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKE 975
K++ K ++ +KKK +KK KK+K +E
Sbjct: 153 KEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 30.3 bits (68), Expect = 2.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 938 KDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKK 971
+ E++ K E++ +KKK +KK KK+K ++
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 28.4 bits (63), Expect = 9.2
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTE 984
K++ K +++ +KKK +KK ++ E
Sbjct: 153 KEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 257
Score = 31.3 bits (71), Expect = 1.5
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 22/101 (21%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKM-------KK---------KGA-EKI 951
E + ++ E ++ K+ +++K K+ KK A EK+
Sbjct: 151 ENAGFQDGEEVSLETLKAKRVINPSGRERKLPLKILADGELSKKLTIKAGAFSTSAKEKL 210
Query: 952 ----GK-KKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
+KK K K + E KK+ E
Sbjct: 211 EYAGCSLIVLPGRKKWVKPSVAKNLARAEEYFAKKRGGETA 251
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla
large ribosomal subunit, rRNA; 3.52A {Tetrahymena
thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Length = 123
Score = 30.0 bits (67), Expect = 1.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 949 EKIGKKKKKKKKKKKKKKKKKKKK 972
KI K+K K K KKKK+ +KK
Sbjct: 100 VKIVKRKMISKPKTDKKKKRSQKK 123
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 31.7 bits (72), Expect = 1.5
Identities = 5/36 (13%), Positives = 17/36 (47%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K+ ++K + KK+ K + ++++ + +
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPA 667
Score = 31.4 bits (71), Expect = 2.1
Identities = 5/65 (7%), Positives = 19/65 (29%)
Query: 913 KKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKK 972
K+ ++ + +K+ + + E K + ++ + +
Sbjct: 633 KQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAEFTRLLGLG 692
Query: 973 KKEAE 977
E +
Sbjct: 693 ASEGD 697
Score = 30.2 bits (68), Expect = 3.8
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 952 GKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
GK+ ++K + KK+ K + E + + K
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAK 668
Score = 29.8 bits (67), Expect = 6.2
Identities = 6/56 (10%), Positives = 20/56 (35%)
Query: 913 KKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKK 968
K+ + + KK+ + K + + + A+ K + ++ + +
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAEFTR 687
Score = 29.4 bits (66), Expect = 6.6
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 954 KKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K K+ ++K + KK+ + E
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEG 662
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle
protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Length = 101
Score = 29.4 bits (66), Expect = 1.6
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 916 KKKKEAEKMRKKKG---AEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKK 972
KKK + K+ K+ AE+ + KK AE+ K+ + I + +K+ + + + +
Sbjct: 8 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDI----VQLEKQLRVTEDSRDQV 63
Query: 973 KKEAEKMKKKTEEAEK 988
+E K + AE+
Sbjct: 64 LEELHKSEDSLLFAEE 79
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 31.4 bits (71), Expect = 1.6
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 910 KIRKKKKKKKEA--EKMRKKKGA--EKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKK 965
K + KK K+ EK+ + K +K + +K + K ++ K
Sbjct: 1 KYPRPHKKLKQLHWEKLDCTDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLAS 60
Query: 966 KKKKKKKKKE 975
K+K+ +K
Sbjct: 61 KRKEDLQKIT 70
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 30.8 bits (69), Expect = 1.6
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 912 RKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGK---KKKKKKKKKKKKKKK 968
+KK+ A K+ + K K + A ++ K K+K+K K +KKK+
Sbjct: 114 KKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQ 173
Query: 969 KKKKKKEAEKMKKKTEEAEK 988
+ +K+AEK +K +
Sbjct: 174 LMRLRKQAEKNVEKKIDKYT 193
Score = 29.6 bits (66), Expect = 4.0
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 912 RKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKK 971
K +K ++ + G + EK K+K +KKK+ + +K+ +K +
Sbjct: 129 LKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIH--YRKKKQLMRLRKQAEKNVE 186
Query: 972 KKKEAEKMKKKT 983
KK + KT
Sbjct: 187 KKIDKYTEVLKT 198
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function,
zinc finger, metal-binding protein, structural genomics;
NMR {Mus musculus} SCOP: g.41.3.4
Length = 85
Score = 29.2 bits (65), Expect = 1.6
Identities = 5/19 (26%), Positives = 6/19 (31%)
Query: 952 GKKKKKKKKKKKKKKKKKK 970
G +K KKK
Sbjct: 1 GSSGSSGRKPPPKKKMTGT 19
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 3iyv_J
Length = 70
Score = 28.5 bits (63), Expect = 1.7
Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 918 KKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKK--KKKKKKKKKKKKKKKE 975
+ E E +RK + + + + DA K++ K K+ + ++ ++ +K K +
Sbjct: 5 QSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRV 64
Query: 976 AEK 978
A++
Sbjct: 65 ADE 67
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus
stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K
1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Length = 149
Score = 30.2 bits (69), Expect = 1.7
Identities = 8/44 (18%), Positives = 23/44 (52%)
Query: 944 KKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
+ E K + +K+K++++ ++ A+K+K++ E+
Sbjct: 33 QGLAIEATPANLKALEAQKQKEQRQAAEELANAKKLKEQLEKLT 76
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor
60S, translation, large ribosomal subunit; 3.52A
{Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Length = 264
Score = 31.0 bits (71), Expect = 1.7
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEK 923
+K R ++ G + +K+K +A
Sbjct: 234 QKVGLRAARRTGLVRGGQKEKMAMKAAA 261
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 30.6 bits (69), Expect = 1.7
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 955 KKKKKKKKKKKKKKKKKKKKEAEKMKKK 982
+ +K++KK+ ++KK+ + E EK ++
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 30.6 bits (69), Expect = 1.9
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 917 KKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEA 976
+ E G E + + D KM + K++KK+ ++KK+ + +++K
Sbjct: 71 LQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQ---KEQKKQLTSQEKKQIRLEREKFE 127
Query: 977 EKMK 980
E K
Sbjct: 128 EDYK 131
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B
3izc_C 3izs_C 1s1i_C 3jyw_C
Length = 387
Score = 31.3 bits (70), Expect = 1.7
Identities = 11/74 (14%), Positives = 26/74 (35%)
Query: 903 KKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKK 962
+ + K KK+A K A+ +++ ++KK + + +K
Sbjct: 111 SDEVKRRFYKNWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVLVHTQIRKTP 170
Query: 963 KKKKKKKKKKKKEA 976
+KK + +
Sbjct: 171 LAQKKAHLAEIQLN 184
Score = 29.4 bits (65), Expect = 6.0
Identities = 11/61 (18%), Positives = 21/61 (34%)
Query: 897 KKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKK 956
K+R + K +K K K + ++ ++KK + K +K
Sbjct: 115 KRRFYKNWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVLVHTQIRKTPLAQK 174
Query: 957 K 957
K
Sbjct: 175 K 175
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 30.8 bits (69), Expect = 1.8
Identities = 5/109 (4%), Positives = 26/109 (23%), Gaps = 17/109 (15%)
Query: 897 KKRTRRKKKKG----AEKIRKKKKKKKEA--EKMRKKKGAEKMKKKKKDAEKMKKKGAEK 950
+ + + K K ++ + + K + + + +
Sbjct: 27 LENSSPELKAELRPLQFKSIREIDVAGGKKALAIFVPVPSLAGFHKVQTKLTRELEKKFQ 86
Query: 951 IGKKK-----------KKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ ++ +K+ + + + ++ E
Sbjct: 87 DRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKILEDLVFPTEI 135
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing
protein 2, S-adenos methionine, structural genomics,
structural genomics consor SGC; HET: SAM; 1.99A {Homo
sapiens}
Length = 278
Score = 30.9 bits (70), Expect = 1.8
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 947 GAEK----IGKKKKKKKKKKKKKKKKKKKKK 973
G+ +G + + + K KK++ +K
Sbjct: 248 GSANCRGYLGGENRVSIRAAGGKMKKERSRK 278
>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer
RNA, 23S ribosomal subunit, ribosome recycling factor,
RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F
1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H
2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H
2qbg_H 2qbi_H* 2qbk_H* 2qov_H ...
Length = 149
Score = 29.9 bits (68), Expect = 1.8
Identities = 6/44 (13%), Positives = 15/44 (34%)
Query: 944 KKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
+ K K + + ++ + + K + A +K E
Sbjct: 33 QGKAVPATKKNIEFFEARRAELEAKLAEVLAAANARAEKINALE 76
>2hb0_A CFA/I fimbrial subunit E; CFAE, adhesin, ETEC, traveler'S disease,
cell adhesion; 2.30A {Escherichia coli}
Length = 369
Score = 31.3 bits (70), Expect = 1.8
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 144 VKVPVEGAPTPATPDTEAPTPAPGTESGPSSTTPGPETKTLESLNEKEKQLQARIT 199
+ VPV P D + P G G T P ++TL++ KQ++ IT
Sbjct: 298 ISVPVLCWPGRLQLDAKVKNPEAGQYMGNIKITFTPSSQTLDN-----KQVEKNIT 348
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 31.2 bits (70), Expect = 1.9
Identities = 10/53 (18%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 931 EKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKK-KKKKKKKEAEKMKKK 982
E + K++ +++ E I + +++KK + K +KK K++ + +
Sbjct: 87 EILDKRQHPIRRLELCDFEPIYQWHLVQREKKLSRTKEEKKAIKEKQDAEAEP 139
Score = 29.2 bits (65), Expect = 8.0
Identities = 10/53 (18%), Positives = 25/53 (47%)
Query: 923 KMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKE 975
++ K+ + + D E + + + KK + K++KK K+K+ + +
Sbjct: 87 EILDKRQHPIRRLELCDFEPIYQWHLVQREKKLSRTKEEKKAIKEKQDAEAEP 139
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 31.2 bits (71), Expect = 2.0
Identities = 11/98 (11%), Positives = 27/98 (27%), Gaps = 10/98 (10%)
Query: 894 LFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGK 953
R R ++ EKM+K ++ + + G
Sbjct: 110 QIRSIIMRENFIPTIVNFSAEEISDAIREKMKKNY-----MSNPSYNYEIVNRASLAAGP 164
Query: 954 KKKKKKKKK-----KKKKKKKKKKKKEAEKMKKKTEEA 986
K + K+ + + + ++ E K ++
Sbjct: 165 MVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQK 202
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins
binding, carbohydrate binding, calcium binding,
endoplasmic reticulu; 2.57A {Mus musculus}
Length = 332
Score = 30.8 bits (69), Expect = 2.0
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 938 KDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKE 975
D ++ G E G K +K+ K K+ ++++ K +
Sbjct: 290 NDEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLKLEH 327
Score = 30.4 bits (68), Expect = 3.1
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 939 DAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEK 978
+ E ++ + K +K+ K K+ ++++ K E
Sbjct: 290 NDEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLKLEHHH 329
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 30.3 bits (68), Expect = 2.1
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 949 EKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
EK+ +K++ + K KK K+ +K+ +K
Sbjct: 153 EKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDK 192
Score = 29.9 bits (67), Expect = 3.1
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 944 KKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
K++ K KK K+ +KK+ K +K+ +
Sbjct: 158 KRRARAKTYHDKKVKQADARKKELAAPALKAIKDKLAQ 195
Score = 29.1 bits (65), Expect = 5.2
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 919 KEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKK 961
++ E+ R+ + KK K A+ KK+ A K K K +
Sbjct: 153 EKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDKLAQ 195
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 30.2 bits (69), Expect = 2.2
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 957 KKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
K++ + + + + +KEA + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQG 192
Score = 29.9 bits (68), Expect = 2.8
Identities = 4/35 (11%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 942 KMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEA 976
K K++ + + + + +K+ + K+ +
Sbjct: 161 KPKRE---AFLEANRAELVRFQKEARALLKELSQG 192
Score = 28.7 bits (65), Expect = 6.0
Identities = 2/29 (6%), Positives = 15/29 (51%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
K++ + + + + +K+ + +++ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 28.3 bits (64), Expect = 8.8
Identities = 3/29 (10%), Positives = 15/29 (51%)
Query: 956 KKKKKKKKKKKKKKKKKKKEAEKMKKKTE 984
K++ + + + + +K+ +K+ ++
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
>2xu0_A Erythrocyte membrane protein 1; adhesion, virulence,
duffy-binding-like-DO; 2.06A {Plasmodium falciparum palo
alto}
Length = 487
Score = 30.9 bits (70), Expect = 2.2
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Query: 912 RKKKKKKKEAEKM-RKKKGAEKMKKKKKDAEK-MKKKGAEKIGKKKKKKKKKKKKKKKKK 969
R KK K + +K R ++ + D + + + + + K +
Sbjct: 325 RIKKIKIDKVKKECRDEQNKKYCSGDGHDCTQTNLAHNQIFVDLDCPRCQDQCIKYNEWI 384
Query: 970 KKKKKEAEKMKKKTEE 985
KK +E K K
Sbjct: 385 VKKLEEFYKQNLKYSM 400
Score = 29.4 bits (66), Expect = 6.2
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 933 MKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKK--KKKKKKKKKEAEK-MKKKTEEAE 987
+ KK ++ K K + +I K KK K K+ + KK +K +
Sbjct: 384 IVKKLEEFYKQNLKYSMEIQKWKKTKNNYYDKEFYENLDKKSYSTIDKFLNLLNNGKH 441
Score = 29.4 bits (66), Expect = 6.9
Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 915 KKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKK--KKKKKKKKKKK 972
KK +E K K E K KK K+ E + KK K K
Sbjct: 385 VKKLEEFYKQNLKYSMEIQKWKKTKNNYYDKEFYENLDKKSYSTIDKFLNLLNNGKHCHD 444
Query: 973 KKEAE 977
K+ +
Sbjct: 445 NKDEK 449
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta
barrel, alpha helix, beta flaps, structural protein;
2.49A {Acetivibrio cellulolyticus}
Length = 227
Score = 30.2 bits (67), Expect = 2.3
Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 21/122 (17%)
Query: 74 VNMAQCWIYLDDPRSVANLLGKLVAGSADDDLMAAQIGFDLYESATQAFLASVLQELKTC 133
+N+++ + L+ R+ + S ++ A +GF + + + + +
Sbjct: 96 LNLSRSYTALEVYRA---------SESPEETGTLAVVGFKVLQKKATTVVFEDSETMPNG 146
Query: 134 -----------APIPDATHVVVKVPVEGAPTPATPDTEAPTPAPGTESGPSST-TPGPET 181
I V+ + AP T PT T + T TP T
Sbjct: 147 ITGTTLFNWYGNRIQSGYFVIQPGEINSAPIATATPTTKPTAFASTMPTVTLTPTPTATT 206
Query: 182 KT 183
T
Sbjct: 207 TT 208
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2;
I-BAR, protein binding; 2.25A {Mus musculus}
Length = 222
Score = 30.2 bits (67), Expect = 2.4
Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 890 LGFILFRKKRTRRKKKKGAEKIRKKKKKK--KEAEKMRK--KKGAEKMKKKKKDAEKMKK 945
LG IL + T+R E + + + EK K + + + + + +
Sbjct: 73 LGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIEYRHRA 132
Query: 946 KGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEK-MKKKTEEAEK 988
EK + + ++K+ K ++ K+ M+ E+++
Sbjct: 133 ANLEKCMSELWRMERKRDKNAREMKESVNRLHAQMQAFVSESKR 176
Score = 30.2 bits (67), Expect = 2.5
Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKK 961
K K + K + E E + A ++K + +M++K + + K+ +
Sbjct: 107 EKNTKLDMQFIKDSCQHYEIEY---RHRAANLEKCMSELWRMERKRDKNAREMKESVNRL 163
Query: 962 KKKKKKKKKKKKKEAEKMKKK 982
+ + + K+ AE +K+
Sbjct: 164 HAQMQAFVSESKRAAELEEKR 184
Score = 28.6 bits (63), Expect = 8.5
Identities = 9/92 (9%), Positives = 35/92 (38%)
Query: 877 DVNDDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKK 936
+N D+ T G +L ++ + + + + + + +K ++ +
Sbjct: 86 HLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRM 145
Query: 937 KKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKK 968
++ +K ++ E + + + + + K+
Sbjct: 146 ERKRDKNAREMKESVNRLHAQMQAFVSESKRA 177
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 31.0 bits (70), Expect = 2.5
Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 15/115 (13%)
Query: 87 RSVANLLGKLVAGSADDDLMAAQIGFD---------LYESATQAFL-ASVLQELKTCAPI 136
++VA++LG S + D +G D + E L +++L +
Sbjct: 2130 KAVAHILGIRDVASINPDSTLVDLGLDSLMGVEVRQILEREHDLVLSMREVRQL----SL 2185
Query: 137 PDATHVVVKVPVEGAPTPATPDTEAPTPAPGTESGPSSTTPGPETKTLESLNEKE 191
+ K + P T ++P S+ PE TL LN +
Sbjct: 2186 RKLQELSSKTSTDADPATPTSHEDSPVRQ-QATLNLSTLLVNPEGPTLTRLNSVQ 2239
>3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 197
Score = 30.1 bits (68), Expect = 2.6
Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 21/124 (16%)
Query: 886 AVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKK-KKKDAEKMK 944
+ TAL GA + K +++ E + +KK + K K+D +
Sbjct: 3 SSTALSLSWSSSPCWSHSFNGGANETLKVSERRFNFEVVSQKKAKKLRKVILKEDVTDLG 62
Query: 945 KKGAEK-----------IGKKK---------KKKKKKKKKKKKKKKKKKKEAEKMKKKTE 984
K+G + K K+ K + ++ + +K++ K+EA+++ +
Sbjct: 63 KQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRVKEEAQQLAMVFQ 122
Query: 985 EAEK 988
Sbjct: 123 TVGA 126
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase;
4.00A {Methanosarcina mazei}
Length = 621
Score = 30.9 bits (69), Expect = 2.6
Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 9/120 (7%)
Query: 870 LLHVAVSDVN-DDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKK 928
L+HVA +V ++A+ + I K+ K+ A K++ K+ +K R+K+
Sbjct: 420 LIHVASINVPFTSESKDAIADIPVI---KEEIDLAIKEVARKLKHYLSKQSNLKKRREKE 476
Query: 929 GAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K K+ K A + K K + + A K
Sbjct: 477 -----IIITKVLPKLAAKVAHVLEKDVPDINPVVAKIMGNLLVHRVIKNNGDGTVDVAIK 531
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 30.0 bits (68), Expect = 2.7
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 843 DAILRRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFI 893
+RR+ Y + G A + L+ A+ D + VRR A ALG I
Sbjct: 32 SYYVRRAAAYALGK----IGDERAVEPLIK-ALKDEDAWVRRAAADALGQI 77
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_R 4a1c_R 4a1e_R
Length = 150
Score = 29.4 bits (66), Expect = 2.8
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 954 KKKKKKKKKKKKKKKKKKKKKEAEKMKKKT 983
K+ K + K K K KK + K KT
Sbjct: 2 NKENKTQAVNKAKNTAKVAKKGSSITKHKT 31
Score = 28.7 bits (64), Expect = 5.4
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
K+ K + K K K KK + K
Sbjct: 2 NKENKTQAVNKAKNTAKVAKKGSSITKHK 30
Score = 28.3 bits (63), Expect = 7.4
Identities = 8/29 (27%), Positives = 9/29 (31%)
Query: 945 KKGAEKIGKKKKKKKKKKKKKKKKKKKKK 973
K + K K K KK K K
Sbjct: 2 NKENKTQAVNKAKNTAKVAKKGSSITKHK 30
Score = 28.3 bits (63), Expect = 8.2
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 943 MKKKGAEKIGKKKKKKKKKKKKKKKKKKKK 972
M K+ + K K K KK K K
Sbjct: 1 MNKENKTQAVNKAKNTAKVAKKGSSITKHK 30
Score = 27.9 bits (62), Expect = 8.6
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 933 MKKKKKDAEKMKKKGAEKIGKKKKKKKKKK 962
M K+ K K K K+ KK K K
Sbjct: 1 MNKENKTQAVNKAKNTAKVAKKGSSITKHK 30
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 30.6 bits (68), Expect = 2.8
Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 931 EKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ + ++ K + K K + KKK + +E + + K
Sbjct: 510 QHIWNMLNPPAEVTTKSQIPL--SKIKTLFPLIEAKKKDQVTAQEIFQDNHEDGPTAK 565
Score = 29.8 bits (66), Expect = 4.9
Identities = 8/73 (10%), Positives = 21/73 (28%)
Query: 916 KKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKE 975
+ + ++ +++ + + K K K + KKK +
Sbjct: 491 FQCLLHRALHPREPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLIEAKKKDQVTA 550
Query: 976 AEKMKKKTEEAEK 988
E + E+
Sbjct: 551 QEIFQDNHEDGPT 563
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_B
Length = 255
Score = 30.1 bits (67), Expect = 2.9
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 960 KKKKKKKKKKKKKKKEAEKMKKK 982
K K+ K KK +KK+ + +K
Sbjct: 5 KNKRLSKGKKGQKKRVVDPFTRK 27
Score = 29.3 bits (65), Expect = 6.0
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 951 IGKKKKKKKKKKKKKKKKKKK-KKKE 975
+GK K+ K KK +KK+ +KE
Sbjct: 3 VGKNKRLSKGKKGQKKRVVDPFTRKE 28
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 29.4 bits (66), Expect = 3.0
Identities = 4/23 (17%), Positives = 6/23 (26%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKKE 975
KK +K+ E
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 28.3 bits (63), Expect = 7.8
Identities = 3/24 (12%), Positives = 6/24 (25%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEA 976
KK +K+ +
Sbjct: 4 KKTAPVQKEVISYGPPNVGANENV 27
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc
complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Length = 800
Score = 30.6 bits (68), Expect = 3.1
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 6/78 (7%)
Query: 683 ALG--LIHANHGAVINDYLLGQVKDATNEMVRHGGCLGLG-LAAMGSARDDIYEQLKFNL 739
L +I + + V+ G + LG L +D + +L L
Sbjct: 251 LLSRIYPLIGPNDIIEQLVGFLDSG--DWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLL 308
Query: 740 Y-QDDAVTGEAAGIAMGL 756
D+ + +A +
Sbjct: 309 SSPDEDIKLLSAELLCHF 326
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix,
PSI, protein structure INI midwest center for structural
genomics; 1.60A {Staphylococcus aureus subsp} SCOP:
a.24.27.1
Length = 199
Score = 29.9 bits (66), Expect = 3.1
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKK 961
KKKK E + K + K A+ K+ + E KK + KK K
Sbjct: 47 EKKKKLTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDF-KKAKSHVDN 105
Query: 962 KKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K+K+ K+ + + +K+K +
Sbjct: 106 IDNDVKRKEVKQLD-DVLKEKYKLHSD 131
Score = 28.7 bits (63), Expect = 7.4
Identities = 22/117 (18%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 879 NDDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKK---KEAEKMRKK-KGAEKMK 934
N D R + + + ++ +K K + I K+K + + +++K K
Sbjct: 74 NADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVKRKEVKQLDDVLKEKYKLHSDYA 133
Query: 935 KKKKDAEKMKKKGAEKIGKKKKKKKK---KKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K K A +K + + + ++ K K ++ KK K+ ++K K + +K
Sbjct: 134 KAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQK 190
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA
complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Length = 87
Score = 28.4 bits (63), Expect = 3.2
Identities = 12/63 (19%), Positives = 30/63 (47%)
Query: 926 KKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
K K + + K + + +++ + K + K K + + + K + E E+++KK E+
Sbjct: 2 KSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQ 61
Query: 986 AEK 988
+
Sbjct: 62 LSR 64
Score = 27.3 bits (60), Expect = 6.3
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 901 RRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEK 942
+ K KK +K + K ++E + +K +K K + + +
Sbjct: 2 KSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQH 43
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 30.8 bits (68), Expect = 3.2
Identities = 50/376 (13%), Positives = 111/376 (29%), Gaps = 36/376 (9%)
Query: 319 LYALGLIHANHGAVINDY---LLGQVKDATNEDDAVTGEAAGIAMGLVLLGSKSE---SA 372
L + + + G ++ ++ +L + + IA+G +++ +
Sbjct: 155 LDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL 214
Query: 373 IQDMVAYAKETQHEKILRGLAVGISFIMYG-------QLENADDLVRDLCEEKDAILRRS 425
I+ +++ + R I+ I LE LV C D LR
Sbjct: 215 IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY 274
Query: 426 GMYTIAMAYCVS----YLYFDLFSDLTYRIVK-NRSGMYTIAMAYCGSGSNVATKRLLHV 480
+ Y + ++ + + + + Y +
Sbjct: 275 CIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQG 334
Query: 481 AVSDVNDD------VRREAVTALGFILFRTLFYVAPACTRSPWPGVISLLDDPMIELKEF 534
+ + +DD VRR A L ++ + P +IS + +K
Sbjct: 335 SDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVS-PALISRFKEREENVKAD 393
Query: 535 SLKKLNDIVDDFWPENEKEKQLQARITKLSKILSGEVSIDLHLQFLIRSNKTDMLILKNT 594
++ P A + + + + ++ L + +K
Sbjct: 394 VFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHK-------QMKEK 446
Query: 595 KESIRVSICHTATIIANAFMHSGTTSDQFLRDNL-EWLARATNWAKL--TATASLGVIHR 651
R + T + N + T L + L ++ + L A + L VI
Sbjct: 447 SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILC 506
Query: 652 GHETEAL-AHMQSYLP 666
H + H+Q+ +P
Sbjct: 507 NHSPQVFHPHVQALVP 522
Score = 29.3 bits (64), Expect = 7.4
Identities = 65/413 (15%), Positives = 113/413 (27%), Gaps = 50/413 (12%)
Query: 296 LAHMQSYLPRETGPTSGYYEGGGLYALGLIHANHGAVINDYLLGQVKDA-----TNEDDA 350
L L + G L AL ++ N+ + ++ V D + D
Sbjct: 648 LGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMH 707
Query: 351 VTGEAAGIAMGLVLLGSKSESAIQD-MVAYAKETQHEKILRGLAVGISFIMYGQLENADD 409
V+ A L + S S I ++ +L+G A+ + L
Sbjct: 708 VSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGT 767
Query: 410 -----------LVRDLCEEKDAILRRSGMYTIAMAYCVSYLYFDLFSDLTY----RIVKN 454
L + + A+ + Y+IA + VKN
Sbjct: 768 NNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKN 827
Query: 455 RSGMYTIAMAYCGSGSNVATKRLLHV----------AVSDVNDDVRREAVTALGFILFRT 504
+I + S V L A S +++V+ A ALG I
Sbjct: 828 SRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGN 887
Query: 505 LFYVAPACTR---SPWPGVISLLDDPMIELKEFSLKKLNDIVDDFWP------ENEKEKQ 555
L P + S LL + S+ L V++ W E +E
Sbjct: 888 LPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGT 947
Query: 556 LQARITKLSKILSGEVSIDLHLQFLIRSNKTDMLILKNTKESIRVSICHT-ATIIANAFM 614
L K+ + + L L L + R S+ I++
Sbjct: 948 RNVVAECLGKL--TLIDPETLLPRLKG-------YLISGSSYARSSVVTAVKFTISDHPQ 998
Query: 615 HSGTTSDQFLRDNLEWLARATNWAKLTATASLGVIHRGHETEALAHMQSYLPR 667
+ D L+ L + A + + + + LP
Sbjct: 999 PIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPH 1051
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 29.6 bits (66), Expect = 3.3
Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 901 RRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKI---GKKKKK 957
R K+ + + K E E R KK E+ +++ + +E + E++ K
Sbjct: 1 RMKQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKS 60
Query: 958 KKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ + +K +K+ K ++E + + K +EAE
Sbjct: 61 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAET 91
Score = 29.2 bits (65), Expect = 3.7
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKK------KGAEKIGKKK 955
K ++ + KK + AE+ AE + K + E+ K K E +K
Sbjct: 14 SKNYHLENEVARLKKLLERAEER-----AELSEGKSAELEEELKTVTNNLKSLEAQAEKY 68
Query: 956 KKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
+K+ K +++ K K KEAE + E
Sbjct: 69 SQKEDKYEEEIKVLSDKLKEAETRAEFAER 98
Score = 28.8 bits (64), Expect = 5.4
Identities = 14/92 (15%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAE--KMKKKKKDAEKMKKKGAEKIGK 953
+ + + + + + +++ + +E + E + K E +K ++K
Sbjct: 15 KNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKE-D 73
Query: 954 KKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
K +++ K K K+ + + + AE+ K E+
Sbjct: 74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R
1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R*
1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U*
1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Length = 88
Score = 28.1 bits (63), Expect = 3.3
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
K K KK+ +++ +K K K +
Sbjct: 3 TKNAKPKKEAQRRPSRKAKVKATLGEFDL 31
Score = 26.9 bits (60), Expect = 9.7
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 943 MKKKGAEKIGKKKKKKKKKKKKKKKKKKKKK---KEAEKMKK 981
M K A+ + +++ +K K K + + E +K+
Sbjct: 1 MSTKNAKPKKEAQRRPSRKAKVKATLGEFDLRDYRNVEVLKR 42
>3c64_A Pfemp1 variant 2 of strain MC; alpha-helical, three-helix bundle,
CD36-binding protein, cell adhesion, CD36-binding
protein,cell adhesion; HET: PG4; 2.40A {Plasmodium
falciparum}
Length = 179
Score = 29.6 bits (66), Expect = 3.5
Identities = 11/85 (12%), Positives = 26/85 (30%)
Query: 903 KKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKK 962
+KK KI+ +K+K+ K + K ++ + + K+ + +
Sbjct: 58 QKKTEWGKIKDHFRKQKDIPKDWTHDDFLQTLLMKDLLLEIIQDTYGDANEIKRIEALLE 117
Query: 963 KKKKKKKKKKKKEAEKMKKKTEEAE 987
+ K E +
Sbjct: 118 QAGVGGIDFAALAGLYTKGFVAEKD 142
Score = 29.6 bits (66), Expect = 3.8
Identities = 6/68 (8%), Positives = 20/68 (29%), Gaps = 1/68 (1%)
Query: 903 KKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDA-EKMKKKGAEKIGKKKKKKKKK 961
+ K E + ++ + +K +K+ + ++ K K
Sbjct: 107 NEIKRIEALLEQAGVGGIDFAALAGLYTKGFVAEKDTTIDKLLQHEQKEADKCLKTHTDD 166
Query: 962 KKKKKKKK 969
++ +
Sbjct: 167 TCPPQEDR 174
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 29.9 bits (68), Expect = 3.5
Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 16/83 (19%)
Query: 918 KKEAEKMRK--KKGAEKMKKKKKDA-------------EKMKKKGAEKIGKKKKKKKKKK 962
+ E +KM + + AE +K ++ K ++ +K+ K +
Sbjct: 121 EDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESA 180
Query: 963 KKKKKKKKKKKKEAEKMKKKTEE 985
+ K + + ++ K +E
Sbjct: 181 LTALETALKGE-DKAAIEAKMQE 202
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 140
Score = 29.2 bits (66), Expect = 3.5
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 946 KGAEKIGKKKKKKKKKKKKKKKKKKKK 972
K KIG ++ + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 28.4 bits (64), Expect = 5.2
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 950 KIGKKKKKKKKKKKKKKKKKKKKKKE 975
K K ++ + +K +K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIP 28
Score = 28.4 bits (64), Expect = 6.6
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAE 977
K ++ + +K +K +
Sbjct: 5 IPKIGSRRNGRISSRKSASARKIPK 29
Score = 28.0 bits (63), Expect = 7.5
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 948 AEKIGKKKKKKKKKKKKKKKKKKKKKKE 975
A+ I K ++ + +K +K +
Sbjct: 2 AKPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 28.0 bits (63), Expect = 8.6
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 940 AEKMKKKGAEKIGKKKKKKKKKKKKKKK 967
A+ + K G+ + G+ +K +K K
Sbjct: 2 AKPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 27.7 bits (62), Expect = 9.7
Identities = 3/26 (11%), Positives = 9/26 (34%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEK 978
K ++ + +K ++ K
Sbjct: 4 PIPKIGSRRNGRISSRKSASARKIPK 29
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 29.3 bits (66), Expect = 3.9
Identities = 6/43 (13%), Positives = 18/43 (41%)
Query: 937 KKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKM 979
++D + + + ++ K +++ +KK + KM
Sbjct: 117 EEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKM 159
Score = 28.5 bits (64), Expect = 7.1
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 954 KKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
++ K +++ +KK K
Sbjct: 131 ASVVAREMKIVTERRAEKKADSRVTYSK 158
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 30.0 bits (67), Expect = 4.0
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 926 KKKGAEKMKKKKKDAEKMKK-KGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEK 978
KK + ++ +K+ + AE KK+K + KK K E E+
Sbjct: 260 KKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEE 313
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 29.7 bits (66), Expect = 4.0
Identities = 12/72 (16%), Positives = 17/72 (23%)
Query: 111 GFDLYESATQAFLASVLQELKTCAPIPDATHVVVKVPVEGAPTPATPDTEAPTPAPGTES 170
L + + V++ PI + A P P P P
Sbjct: 10 SSGLVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIP 69
Query: 171 GPSSTTPGPETK 182
P P K
Sbjct: 70 EPPKEAPVVIEK 81
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein,
decatenation, ATPase, drug design, DNA-binding,
magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus
shibatae}
Length = 530
Score = 30.2 bits (67), Expect = 4.0
Identities = 14/104 (13%), Positives = 38/104 (36%), Gaps = 5/104 (4%)
Query: 885 EAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMK 944
++ + +K + + A K+++ +K++ ++ +KK K ++
Sbjct: 425 AGKESIAEVENIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKL-----LAYLKYIPEVS 479
Query: 945 KKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ A + K+ K + + + K + EE K
Sbjct: 480 RSLATFLASGNKELVSKYQNEISEGLFKLISKKLDLINIEEYRK 523
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein
transport; 2.80A {Homo sapiens} PDB: 3frv_A
Length = 179
Score = 29.3 bits (65), Expect = 4.0
Identities = 13/87 (14%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 903 KKKKGAEKIRKKKKKKKEAEK--MRKKKGAEKMKKK-KKDAEKMKKKGAEKIGKKKKKKK 959
+K E + + K ++ + R+ + ++ ++K K+ + KKG + + K+
Sbjct: 4 AEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEM 63
Query: 960 KKKKKKKKKKKKKKKEAEKMKKKTEEA 986
+ +K K K + +
Sbjct: 64 IRSRKAVSKLYASKAHMNSVLMGMKNQ 90
>1vmb_A 30S ribosomal protein S6; TM0603, structural genomics, JCSG,
structure initiative, PSI, joint center for structural
GENO translation; 1.70A {Thermotoga maritima} SCOP:
d.58.14.1
Length = 140
Score = 28.9 bits (65), Expect = 4.1
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 911 IRKKKKKKKEAEKMRKKKGAEKMKKKKKDAE 941
R+ +KKE + R+K AE + + +E
Sbjct: 109 FRRFDLEKKERKAQREKAAAEATESSEGGSE 139
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 4.2
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 17/41 (41%)
Query: 292 ETEALAHMQS----YLPRETGPTSGYYEGGGLYALGLIHAN 328
E +AL +Q+ Y ++ P AL I A
Sbjct: 18 EKQALKKLQASLKLYAD-DSAP-----------ALA-IKAT 45
Score = 29.1 bits (64), Expect = 4.2
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 17/41 (41%)
Query: 654 ETEALAHMQS----YLPRETGPTSGYYEGGGLYALGLIHAN 690
E +AL +Q+ Y ++ P AL I A
Sbjct: 18 EKQALKKLQASLKLYAD-DSAP-----------ALA-IKAT 45
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 29.9 bits (68), Expect = 4.2
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 880 DDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKD 939
D R + + R R ++ K A +I K++KK + +++ K + ++ K+ +
Sbjct: 37 DTEWRTKLKEI-------NRLRHERNKIAVEIGKRRKKGEPVDELLAK--SREIVKRIGE 87
Query: 940 AEKMKKKGAEKI 951
E ++ +KI
Sbjct: 88 LENEVEELKKKI 99
Score = 29.9 bits (68), Expect = 5.3
Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 908 AEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMK---KKGAEKIGKKKKKKKKKKKK 964
+ K+ + +K K + + K K+ +++ K A +IGK++KK + +
Sbjct: 15 KNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDEL 74
Query: 965 KKKKK--KKKKKEAEKMKKKTEEA 986
K + K+ E E ++ ++
Sbjct: 75 LAKSREIVKRIGELENEVEELKKK 98
>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_F
Length = 213
Score = 29.4 bits (65), Expect = 4.2
Identities = 3/49 (6%), Positives = 3/49 (6%)
Query: 934 KKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKK 982
A A A
Sbjct: 3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG 51
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 29.2 bits (66), Expect = 4.5
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 843 DAILRRSGMYTIAMAYCGSGSNVATKRLLHVAVSDVNDDVRREAVTALGFI 893
+RR+ Y + G A + L+ A+ D + VRR A ALG I
Sbjct: 27 SYYVRRAAAYALGK----IGDERAVEPLIK-ALKDEDAWVRRAAADALGQI 72
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 27.7 bits (61), Expect = 4.5
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 919 KEAEKMRKKKGAE--KMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEA 976
+ K+G ++K +K D ++ + A+ + KK+ + K + K KKKK
Sbjct: 16 QALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGKPPEAPKGKKKKSG 75
Query: 977 EK 978
Sbjct: 76 PS 77
>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial;
mitochondrial ribosome, large ribosomal subunit,
ribosomal R ribosome; 12.10A {Bos taurus}
Length = 137
Score = 28.7 bits (64), Expect = 4.6
Identities = 14/52 (26%), Positives = 20/52 (38%)
Query: 935 KKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
K K K + I + KK + ++ K K EAEK+K E
Sbjct: 79 VDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAV 130
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Length = 106
Score = 28.4 bits (63), Expect = 4.6
Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 891 GFILFRKKRTRRKKKKGAEKIRKKK-----KKKKEAEKMRKKKGAEKMKK---------- 935
G+I + + R+ K+ E+ +KKK +K + + + + EK K+
Sbjct: 4 GYIQKQAQTERKSGKRQTEREKKKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEA 63
Query: 936 KKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKK 973
+K D ++ K+ +I + + +K K + K K
Sbjct: 64 EKFDLQEKFKQQKYEINVLRNRINDNQKVSKTRGKAKV 101
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1
PDB: 1rqs_A 2bcw_B
Length = 74
Score = 27.4 bits (61), Expect = 4.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 951 IGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
+G K+ K + K+ K +AE +KK EEA
Sbjct: 32 LGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEA 67
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA
complex, transcription factor, BZIP, C/EBP; 1.80A {Homo
sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A
1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Length = 78
Score = 27.6 bits (61), Expect = 5.0
Identities = 12/63 (19%), Positives = 30/63 (47%)
Query: 926 KKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
K K + + K + + +++ + K + K K + + + K + E E+++KK E+
Sbjct: 2 KSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQ 61
Query: 986 AEK 988
+
Sbjct: 62 LSR 64
Score = 26.8 bits (59), Expect = 8.9
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 901 RRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEK 942
+ K KK +K + K ++E + +K +K K + + +
Sbjct: 2 KSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQH 43
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA,
translation; 2.8A {Thermus thermophilus} PDB: 2j03_L
3i8i_I
Length = 125
Score = 28.5 bits (64), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 955 KKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
K+ K +K K+ K+EAE++KKK E
Sbjct: 87 KEAKDLAEKGGPVKEGVSKQEAEEIKKKLEAV 118
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 29.6 bits (66), Expect = 5.4
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Query: 475 KRLLHVAVSDVNDDVRREAVTALGFILF-----RTLFYVAPACTRSPWPGVISLLDDPMI 529
++LL + D D VR +A+ A+ ++ F + ++ + +
Sbjct: 127 RKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDG-----FSVLMRAMQQQVQ 181
Query: 530 ELKEFSLKKLNDIVDD 545
+LK S L +++
Sbjct: 182 KLKVKSAFLLQNLLVG 197
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A;
translation, ribosome, ribosomal R ribosomal protein,
STM1, eukaryotic ribosome; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5i_g 3izc_i 3izs_i
Length = 121
Score = 28.5 bits (63), Expect = 5.4
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 891 GFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEK 950
G L R ++ K K + + A +K++ A +++ +K
Sbjct: 48 GSALQGISTLRPRQYA-----TVSKTHKTVSRAYGGSRCANCVKERIIRAFLIEE---QK 99
Query: 951 IGKKKKKKKKKKKKKKKKKKKK 972
I KK K++ + KK +KK KK
Sbjct: 100 IVKKVVKEQTEAAKKSEKKAKK 121
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A
{Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Length = 352
Score = 29.6 bits (66), Expect = 5.5
Identities = 6/49 (12%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 905 KKGAEKIRKKKKK--KKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKI 951
KK E+ R+++++ + +++ ++ + ++ + + A K+
Sbjct: 85 KKEVERSRRERRQANLLKGKQLLREGKVSEARECFTRSINITHAMAHKV 133
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled
coil, alanine, symmetry, axial stagger, BEND,
contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Length = 81
Score = 27.5 bits (61), Expect = 5.5
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 916 KKKKEAEKMRKKKG---AEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKK 972
KKK + K+ K+ AE+ + KK AE+ K+ +++ +KK K + + K
Sbjct: 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDEL----VALQKKLKGTEDELDKY 60
Query: 973 KKEAEKMKKKTEEAEK 988
+ + ++K E A+K
Sbjct: 61 SESLKDAQEKLELADK 76
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_M
Length = 178
Score = 29.0 bits (65), Expect = 5.5
Identities = 3/36 (8%), Positives = 3/36 (8%), Gaps = 3/36 (8%)
Query: 946 KGAEKIGKKKKKKKKKKK---KKKKKKKKKKKEAEK 978
K A A
Sbjct: 142 KAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 177
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 403
Score = 29.8 bits (66), Expect = 5.6
Identities = 15/74 (20%), Positives = 29/74 (39%)
Query: 905 KKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKK 964
K+ K K KKK + +K + A+ K+ ++D MKK + + +
Sbjct: 115 KRRFYKNWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLR 174
Query: 965 KKKKKKKKKKEAEK 978
+KK + +
Sbjct: 175 QKKAHLMEVQVNGG 188
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA
repair, recombination, HOOK motif, replication; HET: DNA
CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Length = 112
Score = 28.2 bits (62), Expect = 5.6
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 927 KKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKK 974
KK E+++ KK E+ + + ++IG+ K K K ++ KK K K
Sbjct: 2 KKLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGK 49
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein,
translation; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 103
Score = 27.8 bits (62), Expect = 5.7
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 935 KKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMK 980
+ A+K + +K K+ K KK ++++ K++
Sbjct: 60 DSIESAKKFVETPGQKY--KETDLLILFKDDYFAKKNEERKQNKVE 103
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding
protein, gene regulation; NMR {Homo sapiens} SCOP:
b.40.4.5
Length = 143
Score = 28.4 bits (63), Expect = 5.8
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 960 KKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K K K K +++ K E E K++ E
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKED 30
Score = 28.4 bits (63), Expect = 6.6
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 956 KKKKKKKKKKKKKKKKKKKEAEKMKKKTE 984
K K K K +++ K + + E ++ K +
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKED 30
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit,
thiopeptide antibiotics, complex, translational
regulation, molecular switch; 3.30A {Deinococcus
radiodurans} SCOP: d.45.1.1
Length = 122
Score = 28.1 bits (63), Expect = 5.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 955 KKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
K+ K +K K+ K EAEKMK + E A
Sbjct: 84 KEAKDMSEKGGVLKEGVAKDEAEKMKAQLEAA 115
>2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas
mendocina}
Length = 258
Score = 29.2 bits (65), Expect = 5.9
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 151 APTPATPDTEAPTPAPGTESGPSSTTPGPE 180
AP P TP P A SGP + + E
Sbjct: 1 APLPDTPGAPFPAVANFDRSGPYTVSSQSE 30
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic
initiation facto SGC, structural genomics; 1.80A
{Cryptosporidium parvum iowa II}
Length = 117
Score = 28.1 bits (62), Expect = 6.0
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 956 KKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
K K K K +++ K + + ++ K E E
Sbjct: 3 KNKGKGGKNRRRGKNDSEGDKRELVFKEEGQE 34
>2wt7_B Transcription factor MAFB; transcription, transcription regulation,
nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 2wty_A* 1k1v_A
Length = 90
Score = 27.3 bits (60), Expect = 6.7
Identities = 10/74 (13%), Positives = 34/74 (45%)
Query: 912 RKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKK 971
+ K E ++++K+ K + + + + + +K + ++ ++ K++ +
Sbjct: 14 HLRGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSR 73
Query: 972 KKKEAEKMKKKTEE 985
+E + K K+E+
Sbjct: 74 LARERDAYKVKSEK 87
>3hgf_A Rhoptry protein fragment; helix-turn-helix, nucleotide binding
protein; 4.00A {Plasmodium yoelii yoelii}
Length = 107
Score = 27.8 bits (61), Expect = 6.7
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 898 KRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMK-------KKGAEK 950
K +K + KI KKK +K+ + +++K K E++K K +
Sbjct: 10 KEIEKKIENIVTKIDKKKYIYDNMKKLLNE--IAEIEKDKTSLEEVKNINMSYGKSLNKL 67
Query: 951 IGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
+K ++KKK + K +K K+ +++K+++ +AE
Sbjct: 68 FLEKIDEEKKKSENMIKSMEKYIKDLDEIKEQSPKAE 104
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A
{Pyrococcus horikoshii} PDB: 3gqx_B
Length = 169
Score = 28.7 bits (64), Expect = 6.8
Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 938 KDAEKMKKKGAEKIGKKKKK--KKKKKKKKKKKKKKKKKE 975
AE++KK+ +I + K+K + K++K+++K +K KE
Sbjct: 130 YIAEELKKELEARIKEIKEKYPRPPKRRKEERKGRKPWKE 169
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 29.4 bits (67), Expect = 7.0
Identities = 9/59 (15%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 931 EKMKKKKKDAEKMK---KKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
++++ KK ++++ + A+++ K ++K+ + K ++ K E+ ++ E
Sbjct: 35 REVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEAR 93
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 28.6 bits (65), Expect = 7.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 954 KKKKKKKKKKKKKKKKKKKKKEAEK 978
K+KK +K+ K+ +KK+K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHH 179
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G
3o58_F 3o5h_F 3u5e_E 3u5i_E
Length = 176
Score = 28.5 bits (63), Expect = 7.3
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 937 KKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
K+ K+K + +++ K+ K ++ + +K K ++KK
Sbjct: 107 AKEKLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKK 151
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3jyv_L*
1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 28.1 bits (62), Expect = 7.3
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 902 RKKKKG---AEKIRKKKKKKKEAEKMRKKKGAEKMKKKK--KDAEKMKKKGAEKIGKKKK 956
+ K +G A K+R ++ + AE KK+ K + K EK+G + K
Sbjct: 3 KGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESK 62
Query: 957 KKKKKKKK 964
+ +K
Sbjct: 63 QPNSAIRK 70
>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*
Length = 142
Score = 28.1 bits (63), Expect = 7.5
Identities = 8/74 (10%), Positives = 19/74 (25%), Gaps = 14/74 (18%)
Query: 908 AEKIRKKKKKKK---------EAEKMRKKKGAEKMKKKKKDAEKMK---KKGAEKIGKKK 955
KK+ K + +M + + + + + KK
Sbjct: 3 QAVNAKKRVFKTHSYRGVDLEKLLEMSTEDFVKLAPARVR--RRFARGMTSKPAGFMKKL 60
Query: 956 KKKKKKKKKKKKKK 969
+ K + +K
Sbjct: 61 RAAKLAAPENEKPA 74
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation
factor 6, EIF6, transla large ribosomal subunit, rRNA;
3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q
4a1d_Q
Length = 104
Score = 27.7 bits (61), Expect = 7.7
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Query: 891 GFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEK 950
GFI + ++ +K K + K+ + +R+ G +K+ + K K
Sbjct: 12 GFITTQLEKKLQKHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSK 71
Query: 951 IGKK-KKKKKKKKKKKKKKKKKKKKEAEKMKKK 982
K +K+ ++ K KK ++ +KK
Sbjct: 72 KATKIARKRLGTHRRAKVKKALLEEAVRAQRKK 104
>3i1m_U 30S ribosomal protein S21; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1vs7_U* 2avy_U 2aw7_U 2vho_U 2vhp_U
3df1_U* 3df3_U* 3e1a_Q 3e1c_Q 1vs5_U 3i1o_U 3i1q_U
3i1s_U 3i1z_U 3i21_U 3izv_Y* 3izw_Y* 3kc4_U 3or9_U
3ora_U ...
Length = 71
Score = 26.7 bits (59), Expect = 7.7
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 895 FRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRK 926
+ K T RK+ K + R KK +E + +
Sbjct: 38 YEKPTTERKRAKASAVKRHAKKLARENARRTR 69
>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with
ribosome, ribosome-antibi complex; 3.20A {Escherichia
coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3
2gyc_3 1rqt_A
Length = 121
Score = 27.8 bits (62), Expect = 7.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 951 IGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
+G K+ K + K+ K +AE +KK EEA
Sbjct: 79 LGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEA 114
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 28.4 bits (63), Expect = 8.0
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 954 KKKKKKKKKKKKKKKKKKKKKEAEKMKKKTE 984
K++ K +KK + +++ +K+
Sbjct: 153 KEEAVAKAAEKKVVRLTSRQRGRIAAQKRIA 183
Score = 28.4 bits (63), Expect = 8.2
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 948 AEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMK 980
EK K +KK + +++ + +++
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKRIA 183
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A
{Escherichia coli}
Length = 505
Score = 29.1 bits (64), Expect = 8.1
Identities = 10/54 (18%), Positives = 26/54 (48%)
Query: 934 KKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
K K EK+ K E+I + K + ++++K K++ + +++ + +
Sbjct: 163 KAKAGIMEKINHKTPEEIYEALGFNKDESQRQEKAKQQAEDAWDRLPPNVRKFD 216
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge
region, four-helix-bundl helix- bundle, alpha-beta
structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1
d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Length = 128
Score = 27.8 bits (62), Expect = 8.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 962 KKKKKKKKKKKKKEAEKMKKKTEEA 986
K K+EAE++KKK EEA
Sbjct: 97 SPDAVIKSGVSKEEAEEIKKKLEEA 121
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
NMR {Mus musculus} SCOP: a.21.1.1
Length = 108
Score = 27.6 bits (61), Expect = 8.3
Identities = 11/83 (13%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 891 GFILF-RKKRTRRKKKKGAEKIR---KKKKKKKEAEKMRKKKGAEKMKKK-KKDAEKMKK 945
+ L+ + K E++ ++ K + EK K ++ KK + + + +
Sbjct: 24 SYSLYCAELMANMKDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLE 83
Query: 946 KGAEKIGKKKKKKKKKKKKKKKK 968
E+ ++ ++K
Sbjct: 84 SLPEEEQQRVLGEEKMLNISGPS 106
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 28.5 bits (64), Expect = 8.3
Identities = 12/77 (15%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 913 KKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKK 972
+K + + E++ + E + + + + EK+ + + + + +++ +
Sbjct: 6 QKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDGILRV 65
Query: 973 KKEAEKMKKKTE-EAEK 988
K E E ++++TE + EK
Sbjct: 66 KAEMENLRRRTELDIEK 82
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large
ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila}
PDB: 4a19_E 4a1b_E 4a1d_E
Length = 191
Score = 28.5 bits (63), Expect = 8.3
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 895 FRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEK 932
F +++ R+ K + +++KKKE E+ +K ++
Sbjct: 117 FGREKARKNHKNLFKAELTEEQKKKETERKNARKQDQQ 154
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA
cleavage, proofreading, BACKTRACKING, gene expression,
multiprotein complex; 3.80A {Saccharomyces cerevisiae}
SCOP: i.8.1.1 PDB: 1eo0_A
Length = 309
Score = 29.0 bits (63), Expect = 8.3
Identities = 10/80 (12%), Positives = 25/80 (31%)
Query: 895 FRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKK 954
F+K K + I K + ++ R+ + + +K + ++
Sbjct: 53 FKKSTNVEISKLVKKMISSWKDAINKNKRSRQAQQHHQDHAPGNAEDKTTVGESVNGVQQ 112
Query: 955 KKKKKKKKKKKKKKKKKKKK 974
+ K+ K K +
Sbjct: 113 PASSQSDAMKQDKYVSTKPR 132
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L
3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Length = 142
Score = 28.1 bits (62), Expect = 9.0
Identities = 5/39 (12%), Positives = 12/39 (30%)
Query: 943 MKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
M I +K + +K ++ K+ +
Sbjct: 1 MGVGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWR 39
>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A {Tetrahymena
thermophila} PDB: 2xzn_2
Length = 208
Score = 28.6 bits (63), Expect = 9.1
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 950 KIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
+G KK + K+K + +K+ K +
Sbjct: 128 DLGLKKDRTVLGNKEKSRHVQKRVKRTKAQAL 159
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 28.8 bits (64), Expect = 9.6
Identities = 5/36 (13%), Positives = 12/36 (33%)
Query: 933 MKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKK 968
M ++ E + + + K K+ +K
Sbjct: 1 MASNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
>3iuk_A Uncharacterized protein; PF05960.1, DUF885, M32
carboxypeptidase-like fold, PSI, MCSG structural
genomics, protein structure initiative; 1.85A
{Arthrobacter aurescens}
Length = 562
Score = 28.8 bits (64), Expect = 9.9
Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 11/42 (26%)
Query: 291 HETEALAHMQSYL-----------PRETGPTSGYYEGGGLYA 321
HE H+Q R SG+ EG LYA
Sbjct: 388 HEGVPGHHLQVATATYRRELLNNWRRNVCWVSGHGEGWALYA 429
Score = 28.8 bits (64), Expect = 9.9
Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 11/42 (26%)
Query: 653 HETEALAHMQSYL-----------PRETGPTSGYYEGGGLYA 683
HE H+Q R SG+ EG LYA
Sbjct: 388 HEGVPGHHLQVATATYRRELLNNWRRNVCWVSGHGEGWALYA 429
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.376
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,860,180
Number of extensions: 959405
Number of successful extensions: 10537
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7799
Number of HSP's successfully gapped: 904
Length of query: 988
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 885
Effective length of database: 3,825,930
Effective search space: 3385948050
Effective search space used: 3385948050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.4 bits)