RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6893
(988 letters)
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 48.3 bits (115), Expect = 3e-07
Identities = 17/89 (19%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 905 KKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKK 964
++ + + +KK + AE+ RK + AE +K + E ++ + I + K K+K
Sbjct: 38 RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEK 97
Query: 965 KKKK-----KKKKKKEAEKMKKKTEEAEK 988
+K + ++ A +++ E+ +
Sbjct: 98 LAQKMESNKENREAHLAAMLERLQEKDKH 126
Score = 46.8 bits (111), Expect = 1e-06
Identities = 17/81 (20%), Positives = 40/81 (49%)
Query: 908 AEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKK 967
+++ E+++KK A + ++K ++AE +K ++ +++ +K ++
Sbjct: 31 EFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNF 90
Query: 968 KKKKKKKEAEKMKKKTEEAEK 988
K K+K A+KM+ E E
Sbjct: 91 IKMAKEKLAQKMESNKENREA 111
Score = 43.7 bits (103), Expect = 1e-05
Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
+ R+K + AE ++ +K++ ++ +K E K EK+ +K ++
Sbjct: 51 LEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENRE 110
Query: 956 KKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
++ ++K K AE+++K E E
Sbjct: 111 AHLAAMLERLQEKDKH----AEEVRKNKELKE 138
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 44.1 bits (104), Expect = 3e-06
Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 891 GFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEK 950
F+L+ K+ R +++ + + E+ K + A K ++ +
Sbjct: 9 AFMLYMKEM--RANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQL 66
Query: 951 IGKKKKKKKKKKKKKKKKKK 970
+ KKKK+K++K
Sbjct: 67 YPGWSARDNYGKKKKRKREK 86
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 45.4 bits (107), Expect = 2e-05
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 15/99 (15%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGA---EKMKKKKKDAEKMKKKGAEKIGKKKKKK 958
+ K K E ++ + K+K + K+K E + KKK++ K K+ E K
Sbjct: 213 QDKTKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQEYQKGNNYKM 272
Query: 959 K------------KKKKKKKKKKKKKKKEAEKMKKKTEE 985
KK +K + + E++ +
Sbjct: 273 YSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHSDYKN 311
Score = 43.1 bits (101), Expect = 1e-04
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 911 IRKKKKKKKEAEKMRKKKGAEKMKKKKK-----DAEKMKKKGAEKIGKKKKKKKKKKKKK 965
+ K K + + K+K E K+K + KK+ K K+ ++ +K K
Sbjct: 212 CQDKTKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQEYQKGNNYK 271
Query: 966 KKKKKKKKKEAEKMKKKTEEAEK 988
+ K K +KK +E+
Sbjct: 272 MYSEFKSIKPEVYLKKYSEKCSN 294
Score = 42.0 bits (98), Expect = 2e-04
Identities = 13/65 (20%), Positives = 24/65 (36%)
Query: 915 KKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKK 974
KKK+E K K+ + K + K E KK +K + + K++
Sbjct: 248 SKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHS 307
Query: 975 EAEKM 979
+ +
Sbjct: 308 DYKNK 312
Score = 37.3 bits (86), Expect = 0.008
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKK 961
KKK+ K K+ ++ ++ + K E KK +EK + + K
Sbjct: 248 SKKKEEYNKQAKQYQEYQK-----GNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFK 302
Query: 962 KKKKKKKKKK 971
++ K K
Sbjct: 303 EELHSDYKNK 312
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 43.9 bits (103), Expect = 5e-05
Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 6/87 (6%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKK-KGA-----EKMKKKKKDAEKMKKKGAEKIGKKK 955
++ A+ + K K E K+ + + + K + + K+ + K+
Sbjct: 182 LERDNRAKLPKSKCKNNALYEACEKECIDPCMKYRDWIIRSKFEWHTLSKEYETQKVPKE 241
Query: 956 KKKKKKKKKKKKKKKKKKKEAEKMKKK 982
+ K + K K
Sbjct: 242 NAENYLIKISENKNDAKVSLLLNNCDA 268
Score = 41.9 bits (98), Expect = 2e-04
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 4/79 (5%)
Query: 910 KIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKK 969
R + K +++ K+ K + I + K + K+ + +K
Sbjct: 182 LERDNRAKLPKSKCKNNALYEACEKECIDPCMKYRDW----IIRSKFEWHTLSKEYETQK 237
Query: 970 KKKKKEAEKMKKKTEEAEK 988
K+ + K +E
Sbjct: 238 VPKENAENYLIKISENKND 256
Score = 38.1 bits (88), Expect = 0.003
Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 3/79 (3%)
Query: 898 KRTRRKKKKGAEKIRKKKKKKKEAEKM--RKKKGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
K + ++ + R K + K+ + +K+ K+ AE K
Sbjct: 192 KSKCKNNALYEACEKECIDPCMKYRDWIIRSKFEWHTLSKEYET-QKVPKENAENYLIKI 250
Query: 956 KKKKKKKKKKKKKKKKKKK 974
+ K K +
Sbjct: 251 SENKNDAKVSLLLNNCDAE 269
Score = 37.3 bits (86), Expect = 0.006
Identities = 12/86 (13%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKK 961
+ K + +++ + + K+ E + ++ A+ K K + +K+
Sbjct: 150 SEHKNNINNCKNIPQEELQITQWIKEWHGEFLLERDNRAKLPKSKCKNNALYEACEKECI 209
Query: 962 KKKKKKKK--KKKKKEAEKMKKKTEE 985
K + + K E + K+ E
Sbjct: 210 DPCMKYRDWIIRSKFEWHTLSKEYET 235
Score = 36.5 bits (84), Expect = 0.011
Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 6/84 (7%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEKMKKKK-KDAEK---MKKKGAEKIGKKKKKKKKKKKK 964
E+ + K K + + + EK K + K+ + +K K
Sbjct: 183 ERDNRAKLPKSKCKNNALYEACEKECIDPCMKYRDWIIRSKFEWHTL--SKEYETQKVPK 240
Query: 965 KKKKKKKKKKEAEKMKKKTEEAEK 988
+ + K K K
Sbjct: 241 ENAENYLIKISENKNDAKVSLLLN 264
Score = 35.8 bits (82), Expect = 0.017
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 915 KKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKK 970
+ K E + K+ E K K++AE K +E K + K
Sbjct: 220 IRSKFEWHTLSKEY--ETQKVPKENAENYLIKISENKNDAKVSLLLNNCDAEYSKY 273
Score = 28.5 bits (63), Expect = 3.9
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 13/87 (14%)
Query: 909 EKIRKKKKK----------KKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKI--GKKKK 956
I+ K+ KKE++ + KK K K + K + G
Sbjct: 43 AIIKTYTKETMKDHFIEASKKESQ-LLLKKNDNKYNSKFCNDLKNSFLDYGHLAMGNDMD 101
Query: 957 KKKKKKKKKKKKKKKKKKEAEKMKKKT 983
K + K ++ K ++ +
Sbjct: 102 FGGYSTKAENKIQEVFKGAHGEISEHK 128
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 42.3 bits (99), Expect = 2e-04
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 915 KKKKKEAEKMRKKKGAEKMKKKKKDAEKMK-----KKGAEKIGKKKKKKKKKKKKKKKKK 969
+ KE K+ +K ++ K + I +KKK+ K K
Sbjct: 187 SELPKEQGKLNEKCASKLYYNNMAICMLPLCHDACKSYDQWITRKKKQWDVLSTKFSSVK 246
Query: 970 KKKKKEAEKMKKKTEEAEK 988
K +K E + + ++
Sbjct: 247 KTQKIGTENIATAYDILKQ 265
Score = 41.9 bits (98), Expect = 2e-04
Identities = 12/104 (11%), Positives = 30/104 (28%), Gaps = 13/104 (12%)
Query: 895 FRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRK-----KKGAEKMKKKKKDAEKMKKKGAE 949
+ + + + K + K + K + + +KKK + + K +
Sbjct: 185 YMSELPKEQGKLNEKCASKLYYNNMAICMLPLCHDACKSYDQWITRKKKQWDVLSTKFSS 244
Query: 950 KIGKKKKKKKK--------KKKKKKKKKKKKKKEAEKMKKKTEE 985
+K + K++ K+ + E K
Sbjct: 245 VKKTQKIGTENIATAYDILKQELNGFKEATFENEINKRDNLYNH 288
Score = 40.0 bits (93), Expect = 0.001
Identities = 11/87 (12%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKK 961
+ K K+ +K K M K ++ + ++ K
Sbjct: 187 SELPKEQGKLNEKCASKLYYNNMAICML-PLCHDACKSYDQWITRKKKQWDVLSTKFSSV 245
Query: 962 KKKKKKKKKKKKKEAEKMKKKTEEAEK 988
KK +K + + +K++ ++
Sbjct: 246 KKTQKIGTENIATAYDILKQELNGFKE 272
Score = 31.9 bits (72), Expect = 0.35
Identities = 13/100 (13%), Positives = 28/100 (28%), Gaps = 16/100 (16%)
Query: 900 TRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKK 959
+ + EK KK + + + +++ +D K K+ +K K
Sbjct: 147 MFSLRSRLKEKFVWICKKDVTLKV--EPQIYRWIREWGRDYMSELPKEQGKLNEKCASKL 204
Query: 960 KKKKKKKKKK--------------KKKKKEAEKMKKKTEE 985
+KKK+ + + K
Sbjct: 205 YYNNMAICMLPLCHDACKSYDQWITRKKKQWDVLSTKFSS 244
Score = 31.1 bits (70), Expect = 0.52
Identities = 11/61 (18%), Positives = 22/61 (36%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKK 961
+KKK + + K K+ +K+ + A K++ K+ E K+
Sbjct: 229 TRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFKEATFENEINKRDNLYNH 288
Query: 962 K 962
Sbjct: 289 L 289
Score = 29.2 bits (65), Expect = 2.2
Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 11/66 (16%)
Query: 915 KKKKKEAEKMRKKKGAEKMKKKKKDA------EKMKKKGAEKIGKKKKKKKKKKKKKKKK 968
+KKK+ + + K + K +K + +K++ K+ + + K+
Sbjct: 229 TRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQE-----LNGFKEATFENEINKRD 283
Query: 969 KKKKKK 974
Sbjct: 284 NLYNHL 289
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 37.9 bits (88), Expect = 4e-04
Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 891 GFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEK 950
FI++ + + R+ + + + K+ K + ++A+K++ EK
Sbjct: 11 AFIVWSRDQRRKMALENPRM--RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREK 68
Query: 951 IGKKKKKKKKKKKKKKK 967
K + ++K K K
Sbjct: 69 YPNYKYRPRRKAKMLPK 85
Score = 26.0 bits (57), Expect = 8.4
Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 923 KMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMK-- 980
R+K E + + + K + + + +K ++ +K + ++K K +
Sbjct: 18 DQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPR 77
Query: 981 KKTEEAEK 988
+K + K
Sbjct: 78 RKAKMLPK 85
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 37.9 bits (88), Expect = 6e-04
Identities = 11/86 (12%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 891 GFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEK 950
G+ F ++ + K++ E ++ + + KK AE+ +++
Sbjct: 15 GYQKFSQELLSNGELNHL----PLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVH 70
Query: 951 IGKKKKKKKKKKKKKKKKKKKKKKEA 976
+ K + + K+ K+++
Sbjct: 71 LDLWVKSLSPQDRAAYKEYISNKRKS 96
Score = 27.2 bits (60), Expect = 4.1
Identities = 8/59 (13%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 931 EKMKKKKKD-AEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ E+M + G+ + +K+ KK ++++++ K + K ++
Sbjct: 25 SNGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDR 83
>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase
8, USH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 38.3 bits (89), Expect = 9e-04
Identities = 19/116 (16%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 864 NVATKRLLHVAVSDVN--DDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEA 921
++TK +H A+ ++ R + ++L+ K T I+K+ K++
Sbjct: 25 KISTKSYVHSALKIFKTAEECRLDRDEERAYVLYMKYVTV------YNLIKKRPDFKQQQ 78
Query: 922 EKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAE 977
+ G +KK ++AE++ + + + + +KK ++K ++++ ++ +++ +
Sbjct: 79 DYFHSILGPGNIKKAVEEAERLSESLKLRYEEAEVRKKLEEKDRQEEAQRLQQKRQ 134
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I,
dispensable insert domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 72
Score = 35.9 bits (83), Expect = 0.001
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 931 EKMKKKKKDAEKMKK--KGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K+ KK+ ++ K A+ K K K KK + KKK ++ E + MK + + ++
Sbjct: 9 TKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDR 68
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 36.1 bits (83), Expect = 0.002
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 891 GFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEK 950
+ F ++ R K K K K+ +K K +D ++ K++
Sbjct: 17 PYFRFFMEK--RAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERN 74
Query: 951 IGKKKKKKKKKKKKKKK 967
+ + ++ + KK
Sbjct: 75 LARFREDHPDLIQNAKK 91
Score = 29.1 bits (65), Expect = 0.56
Identities = 14/90 (15%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 902 RKKKKGAEKIRK---------KKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIG 952
+K KK + +K +K+ K A+ + + K K +++ +K K
Sbjct: 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYI 61
Query: 953 KKKKKKKKKKKKKKKKKKKKKKEAEKMKKK 982
+ +++K++ ++ + ++ + + KK
Sbjct: 62 QDFQREKQEFERNLARFREDHPDLIQNAKK 91
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 38.6 bits (89), Expect = 0.003
Identities = 11/87 (12%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 902 RKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKK 961
+ + ++ RK + + ++++ K+ E+ K+ A++ + +K
Sbjct: 103 ARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKE-ADRAQQYFEKMDAD 161
Query: 962 KKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K +K +++A+ + E+++
Sbjct: 162 INVTKADVEKARQQAQIRHQMAEDSKA 188
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 36.1 bits (83), Expect = 0.003
Identities = 7/84 (8%), Positives = 29/84 (34%), Gaps = 6/84 (7%)
Query: 891 GFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEK 950
+ L+ + K ++ + K ++ K ++ KK +
Sbjct: 24 SYSLYCAELMANMKDV------PSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVE 77
Query: 951 IGKKKKKKKKKKKKKKKKKKKKKK 974
+ + + ++++++ ++K
Sbjct: 78 LLRFLESLPEEEQQRVLGEEKMLN 101
Score = 32.2 bits (73), Expect = 0.063
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 8/90 (8%)
Query: 907 GAEKIRKKKKKKKEAEKMRKKKGA--------EKMKKKKKDAEKMKKKGAEKIGKKKKKK 958
G+ + K K + + + K E+M + +K+K
Sbjct: 1 GSSGSSGQLKDKFDGRPTKPPPNSYSLYCAELMANMKDVPSTERMVLCSQQWKLLSQKEK 60
Query: 959 KKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
KK +KKK + E + + E E+
Sbjct: 61 DAYHKKCDQKKKDYEVELLRFLESLPEEEQ 90
Score = 31.5 bits (71), Expect = 0.12
Identities = 13/96 (13%), Positives = 35/96 (36%), Gaps = 10/96 (10%)
Query: 897 KKRTRRKKKKGAEKIRKKKK------KKKEAEKMRKKKGAEKMKKKKKD----AEKMKKK 946
+ + K K + K + M+ E+M + ++K K
Sbjct: 3 SGSSGQLKDKFDGRPTKPPPNSYSLYCAELMANMKDVPSTERMVLCSQQWKLLSQKEKDA 62
Query: 947 GAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKK 982
+K +KKK + + + + +++++ ++K
Sbjct: 63 YHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEK 98
Score = 31.5 bits (71), Expect = 0.13
Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 13/98 (13%)
Query: 896 RKKRTRRKKKKG--------AEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMK-KK 946
K + + K ++ K E+M + K EK K
Sbjct: 9 LKDKFDGRPTKPPPNSYSLYCAELMANMKDVPSTERMVL---CSQQWKLLSQKEKDAYHK 65
Query: 947 GAEKIGKKKKKKKKKKKKKKKKKKKKKKEAE-KMKKKT 983
++ K + + + + ++++++ E KM +
Sbjct: 66 KCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNIS 103
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1
(Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 38.2 bits (87), Expect = 0.006
Identities = 32/204 (15%), Positives = 58/204 (28%), Gaps = 25/204 (12%)
Query: 477 LLHVAVSDVNDDVRREAVTALGFILFRTLFYVAP---ACTRSPWPGVISLLDDPMIELKE 533
++ A S +++V+ A ALG I L P S LL +
Sbjct: 857 VILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISS 916
Query: 534 FSLKKLNDIVDDFWP------ENEKEKQLQARITKLSKILSGEVSIDLHLQFLIRSNKTD 587
S+ L V++ W E +E L K+ + + L L
Sbjct: 917 ASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTL--IDPETLLPRLKG----- 969
Query: 588 MLILKNTKESIRVSICHTATIIANAFMHSGTTSDQFLRDNLEWLARATN----WAKLTAT 643
L + R S+ T + D L++ + + + A
Sbjct: 970 --YLISGSSYARSSV---VTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVAL 1024
Query: 644 ASLGVIHRGHETEALAHMQSYLPR 667
+ + + + LP
Sbjct: 1025 VTFNSAAHNKPSLIRDLLDTVLPH 1048
Score = 31.6 bits (70), Expect = 0.51
Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 5/122 (4%)
Query: 483 SDVNDDVRREAVTALGFILFRTLFYVAPACTRSPWPGVISLLDDPMIELKEFSLKKLNDI 542
+ + D R A L L + + R ++ LL+D E++ ++K L +
Sbjct: 13 TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPL 72
Query: 543 VDDFWPENEKEKQLQARITKLSKILSGEVSIDLHLQFLIRSNKTDMLILKNTKESIRVSI 602
V KE Q++ + L + + + + L ++ ++ ++
Sbjct: 73 VSKV-----KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV 127
Query: 603 CH 604
C
Sbjct: 128 CK 129
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 33.2 bits (76), Expect = 0.015
Identities = 9/73 (12%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 891 GFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEK 950
F+++ + + R+K + K K + + +A++++ ++
Sbjct: 9 AFMVWSRGQ--RRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKE 66
Query: 951 IGKKKKKKKKKKK 963
K + ++K K
Sbjct: 67 HPDYKYRPRRKTK 79
>d1u2ma_ f.48.1.1 (A:) Periplasmic chaperon skp (HlpA) {Escherichia
coli [TaxId: 562]}
Length = 143
Score = 34.6 bits (79), Expect = 0.016
Identities = 7/85 (8%), Positives = 29/85 (34%), Gaps = 5/85 (5%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKK 968
+ ++ +K + + + + ++ ++ K + K + K +K
Sbjct: 12 GSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMA 71
Query: 969 K-----KKKKKEAEKMKKKTEEAEK 988
+ +K + + +++ E
Sbjct: 72 QRQTFAQKAQAFEQDRARRSNEERG 96
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 35.8 bits (82), Expect = 0.017
Identities = 9/58 (15%), Positives = 25/58 (43%)
Query: 931 EKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ K + ++ + + K + + KK +KK + K +K ++++ + K
Sbjct: 114 RYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNK 171
Score = 33.5 bits (76), Expect = 0.11
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 931 EKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
+K++ + KK + K K + + KK +KK + K +E
Sbjct: 107 QKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKE 161
Score = 33.1 bits (75), Expect = 0.14
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 927 KKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKE------AEKMK 980
+ KK + ++ K +K + KK +KK + K +K KE +
Sbjct: 113 SRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQ 172
Query: 981 KKTEEAEK 988
+ E
Sbjct: 173 GELENYVS 180
Score = 28.1 bits (62), Expect = 5.3
Identities = 9/84 (10%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 868 KRLLHVAVSDVNDDVRREAVTALGFILFRKKRTRRKKKKGAEKIRK-----KKKKKKEAE 922
+ +L +++ + ++ ++ K+ + +++ + + K KK +KK
Sbjct: 91 EEMLKSFHNELLTQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQG 150
Query: 923 KMRKKKGAEKMKKKKKDAEKMKKK 946
+K ++K + + +
Sbjct: 151 SKNPQKYSDKELQYIDAISNKQGE 174
Score = 27.7 bits (61), Expect = 5.7
Identities = 9/48 (18%), Positives = 25/48 (52%)
Query: 941 EKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
E+ + + + KK + +++ K K + E +K++KK++ ++
Sbjct: 106 EQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKN 153
>d1xu6a_ g.16.3.1 (A:) Variant surface glycoprotein MITAT 1.2, VSG
221, C-terminal domain {Trypanosoma brucei brucei
[TaxId: 5702]}
Length = 80
Score = 33.4 bits (76), Expect = 0.017
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 907 GAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKK 966
G+ + +K K AE ++ E KK E K + + KK K++
Sbjct: 1 GSHMLEVLTQKHKPAESQQQAAETEGSCNKKDQNEC--KSPCKWHNDAENKKCTLDKEEA 58
Query: 967 KKKKKKKKEAEKMKK 981
KK + + K
Sbjct: 59 KKVADETAKDGKTGN 73
Score = 25.3 bits (55), Expect = 9.7
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 897 KKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKK 956
K +++ + KK + E + K + KK D ++ KK A++ K K
Sbjct: 12 HKPAESQQQAAETEGSCNKKDQNECKSPCKWHNDAENKKCTLD-KEEAKKVADETAKDGK 70
Query: 957 KKK 959
Sbjct: 71 TGN 73
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 104
Score = 33.2 bits (76), Expect = 0.032
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 14/94 (14%)
Query: 895 FRKKRTRRK-----KKKGAEK---------IRKKKKKKKEAEKMRKKKGAEKMKKKKKDA 940
K++R + ++ ++ K + EK K E+ + +
Sbjct: 11 LDSKKSRAEGRRIPRRFAVPNVKLHELVEASKELGLKFRAEEKKYPKSWWEEGGRVVVEK 70
Query: 941 EKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKK 974
K K ++ +K + +++K+++KK KKKKKK
Sbjct: 71 RGTKTKLMIELARKIAEIREQKREQKKDKKKKKK 104
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 34.7 bits (80), Expect = 0.035
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 934 KKKKKDAEKMKKKGAEKIGKK-KKKKKKKKKKKKKKKKKKKKEAEKMKKK 982
++K + K ++ + K + + +K+ K++K K K+E EK+ K+
Sbjct: 88 NEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 32.4 bits (74), Expect = 0.22
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 922 EKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKM 979
++M ++ K D +M + + + +K+ K++K K K++ +K E
Sbjct: 84 KEMTNEEKNIITNLSKCDFTQMSQYFKAQ--TEARKQMSKEEKLKIKEENEKLLKEYG 139
Score = 32.0 bits (73), Expect = 0.29
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 934 KKKKKDAEKMKKKGAEKIG-KKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
+K+ + EK K + + K + + +K+ K++K K + + E
Sbjct: 83 RKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 30.5 bits (69), Expect = 0.83
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 926 KKKGAEKMKKKK------KDAEKMKKKGAEKIGKKKKK------KKKKKKKKKKKKKKKK 973
K E K+ KD K + I K + K + + +K+ K
Sbjct: 62 KMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSK 121
Query: 974 KEAEKMKKKTEEAEK 988
+E K+K++ E+ K
Sbjct: 122 EEKLKIKEENEKLLK 136
Score = 29.3 bits (66), Expect = 2.1
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIG 952
+ + +K+ + EK++ K+ EK+ K+ K E+I
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHK--ERIA 151
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 34.9 bits (80), Expect = 0.036
Identities = 18/132 (13%), Positives = 51/132 (38%), Gaps = 16/132 (12%)
Query: 872 HVAVSDVNDDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAE 931
S V+ + ++++ + + +R + ++ K +K K +++
Sbjct: 199 VEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQ-YN 257
Query: 932 KMKKKKKDAEKMKKKGAEKIGKKKKKKK---------------KKKKKKKKKKKKKKKEA 976
K++ + E + K+ + KK + K+ +K+++ +++
Sbjct: 258 KLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKM 317
Query: 977 EKMKKKTEEAEK 988
+ K E+AEK
Sbjct: 318 RRAKLAKEKAEK 329
Score = 31.5 bits (71), Expect = 0.50
Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 12/90 (13%)
Query: 897 KKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKG---AEKMKKKKKD---------AEKMK 944
++ K E+ K + E + K+ G KK +
Sbjct: 242 VEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFL 301
Query: 945 KKGAEKIGKKKKKKKKKKKKKKKKKKKKKK 974
+ E +++ ++K ++ K K+K +K++
Sbjct: 302 QAVKENQKRRETEEKMRRAKLAKEKAEKER 331
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster
(Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 32.1 bits (73), Expect = 0.036
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 891 GFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEK 950
F LF + R K KG K+ +M A+ + +K A K+K+K +
Sbjct: 9 AFFLFCSEY--RPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKD 66
Query: 951 IGKKKKKKKKK 961
I + K K
Sbjct: 67 IAAYRAKGKPD 77
Score = 29.8 bits (67), Expect = 0.24
Identities = 16/64 (25%), Positives = 24/64 (37%)
Query: 923 KMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKK 982
+ R K E D K + K+ +KK K K+K +K A + K K
Sbjct: 16 EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGK 75
Query: 983 TEEA 986
+ A
Sbjct: 76 PDAA 79
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus
thermophilus, strain hb27 [TaxId: 274]}
Length = 110
Score = 33.0 bits (75), Expect = 0.038
Identities = 12/92 (13%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 894 LFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGK 953
+F + + E + ++ +E KK+ ++ + + + A+++ K
Sbjct: 13 VFHRAIREKGVALDLEALLALDREVQEL------------KKRLQEVQTERNQVAKRVPK 60
Query: 954 KKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
++K+ + K ++ K E+ ++ E
Sbjct: 61 APPEEKEALIARGKALGEEAKRLEEALREKEA 92
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 34.7 bits (80), Expect = 0.039
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 922 EKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
E G E + + D KM + +K++KK+ ++KK+ + E EK ++
Sbjct: 76 ESGGPLNGIEIKEFSRCDFTKMFDY-------FQLQKEQKKQLTSQEKKQIRLEREKFEE 128
Query: 982 K 982
Sbjct: 129 D 129
Score = 32.4 bits (74), Expect = 0.18
Identities = 8/58 (13%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 931 EKMKKKKKDAEKMKKKGAEKIG-KKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
+ +K+ ++ K + K + +K++KK+ ++K+ +++++ E +
Sbjct: 72 QVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 29.3 bits (66), Expect = 1.7
Identities = 10/57 (17%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 941 EKMKKKGAEKIGKKKKKKKK---------KKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ +K+ G G + K+ + + +K++KK+ +E ++++ + E+ E+
Sbjct: 72 QVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEE 128
Score = 29.3 bits (66), Expect = 2.1
Identities = 7/74 (9%), Positives = 25/74 (33%), Gaps = 13/74 (17%)
Query: 895 FRKKRTRRKKKKGAEKIRKKKK-----------KKKEAEKMRKKKGAEKMKKKKKDAEKM 943
F + +I++ + +KE +K EK + + + +
Sbjct: 70 FLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTS--QEKKQIRLEREKFE 127
Query: 944 KKKGAEKIGKKKKK 957
+ ++ ++++
Sbjct: 128 EDYKFCELDGRREQ 141
Score = 27.4 bits (61), Expect = 7.3
Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIG 952
+ +++KK+ EK + + EK ++ K E ++ E++G
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRR--EQVG 143
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
thermophilus [TaxId: 274]}
Length = 1504
Score = 35.5 bits (81), Expect = 0.043
Identities = 13/87 (14%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 861 SGSNVATKRLLHVAVSDVNDDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKK--- 917
+G VA +L +D R V + ++ + + GAE I++ K+
Sbjct: 410 TGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDL 469
Query: 918 KKEAEKMRKKKGAEKMKKKKKDAEKMK 944
+ +++ ++ ++ K ++++
Sbjct: 470 EALEKELLEEMKHPSRARRAKARKRLE 496
>d1f3ub_ b.65.1.1 (B:) TFIIF alpha subunit, Rap74 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 149
Score = 33.6 bits (77), Expect = 0.044
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 14/81 (17%)
Query: 910 KIRKKKKKKKEAEKMR----------KKKGA----EKMKKKKKDAEKMKKKGAEKIGKKK 955
+R K K+ M A + KK E+M + GA +K
Sbjct: 11 VVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIYQEEEMPESGAGSEFNRK 70
Query: 956 KKKKKKKKKKKKKKKKKKKEA 976
+++ ++KK K+ + E
Sbjct: 71 LREEARRKKYGIVLKEFRPED 91
Score = 27.1 bits (60), Expect = 6.0
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 911 IRKKKKKKKEAEKMRKK-KGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKK 969
+ + E + KK E+M + +E +K E ++KK K+ + + +
Sbjct: 35 FATWNQARLERDLSNKKIYQEEEMPESGAGSEFNRKLREEA--RRKKYGIVLKEFRPEDQ 92
Query: 970 KKKKKEAEKMKKK 982
+ K +K
Sbjct: 93 PWLLRVNGKSGRK 105
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 31.8 bits (72), Expect = 0.053
Identities = 10/56 (17%), Positives = 21/56 (37%)
Query: 891 GFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKK 946
+ F + KKK + + K+ + K A++ K + A+ K +
Sbjct: 8 SYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR 63
Score = 26.0 bits (57), Expect = 4.8
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 931 EKMKKKKKDAEKMKKKGAEKIGK--KKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
E+ KKK DA + ++K + K K+K K + K K + +MK
Sbjct: 18 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKT 70
Score = 26.0 bits (57), Expect = 5.1
Identities = 10/55 (18%), Positives = 20/55 (36%)
Query: 921 AEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKE 975
+ R++ + +E KK K+K K + K K + ++E
Sbjct: 13 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYERE 67
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 34.8 bits (79), Expect = 0.053
Identities = 68/525 (12%), Positives = 147/525 (28%), Gaps = 80/525 (15%)
Query: 403 QLENADDLVRDLCEEKDAILRRSGMYTIAMAYCVSYLYFD---LFS--DLTYRIVKNRSG 457
+L N R K+A+ + + + + VS L+ D +L + +
Sbjct: 18 ELNNEKKEKR-----KEAVKKV--IAAMTVGKDVSSLFPDVVNCMQTDNLELKKL----- 65
Query: 458 MYTIAMAYCGSGSNVATK--RLLHVAVSDVNDDVRREAVTALGFILFRTLF-YVAPACTR 514
+Y M Y S ++A D N +R AV +G I + Y+
Sbjct: 66 VYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEP--- 122
Query: 515 SPWPGVISLLDDPMIELKE------FSLKKLNDIVDDFWPENEKEKQL----QARITKLS 564
+ L D +++ L +N + + + + L + +
Sbjct: 123 -----LRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANA 177
Query: 565 KILSGEVSIDLHLQFLIRSNKTDML-ILKNTKESIRVSICHTATIIANAFMHSGTTSDQF 623
E+S L+ N ++ +L E ++N +
Sbjct: 178 VAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSI 237
Query: 624 LRDNLEWLARATNWAKLTATASLGVIHRGHETEALAHMQSYLPRETGP------TSGYYE 677
L N A + + + + + + L + P +
Sbjct: 238 CERVTPRL-SHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQ 296
Query: 678 GGGLYALGLIHANHGAVINDYLLGQVKDATNEMVRHGGCLGLGLAAMGSAR--DDIYEQL 735
L + LI ++ + + + L + + + S + +L
Sbjct: 297 YVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDI-MIRLASQANIAQVLAEL 355
Query: 736 KFNLYQDDAVTGEAAGIAMGLVLLGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMY 795
K + D A A+G A E E+ + L +
Sbjct: 356 KEYATEVDVDFVRKAVRAIG--------------RCAIKVEQSAERCVSTL---LDL--- 395
Query: 796 GQLENADDLVRDLCEE--KDAILRRSGMYTIAMAYCGSGSNVATKRLLHDAILRRSGMYT 853
++ + V +D + Y +A + L + R + ++
Sbjct: 396 --IQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLD-----SLDEPDARAAMIWI 448
Query: 854 IAMAYCGSGSNVATK-RLLHVAVSDVNDDVRREAVTALGFILFRK 897
+ Y N D + V+ +TA+ + +K
Sbjct: 449 VGE-YAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKK 492
>d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 68
Score = 31.5 bits (72), Expect = 0.054
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 946 KGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
+GA +G K+ K + K+ K +AE +KK EEA
Sbjct: 21 RGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEA 61
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase
{Clostridium thermocellum [TaxId: 1515]}
Length = 164
Score = 32.7 bits (74), Expect = 0.092
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 944 KKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
K K +K KK+ + K K + EK+K
Sbjct: 8 TKSWNIKNAQKFKKENESKYNTTIITNKDELTFEKVKL 45
>d1dd3a2 d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 71
Score = 30.0 bits (68), Expect = 0.19
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 954 KKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
K +K K K+EAE++KKK EEA
Sbjct: 32 KDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEA 64
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli
[TaxId: 562]}
Length = 276
Score = 32.5 bits (72), Expect = 0.23
Identities = 27/195 (13%), Positives = 56/195 (28%), Gaps = 4/195 (2%)
Query: 699 LLGQVKDATNEMVRHGGCLGLGLAAMGSARDDIYEQLKFNLYQDDAVTGEAAGIAMGLVL 758
L + N + R G LG + +D + N+ +D A
Sbjct: 54 LAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQ 113
Query: 759 LGSKSESAIQDMVAYAKETQHEKILRGLAVGISFIMYGQLENADDLVRDLCEEKDAILRR 818
K+ +V ++ T +K I + L+ +L ++ +
Sbjct: 114 RCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGD--- 170
Query: 819 SGMYTIAMAYCGSGSNVATKRLLHDAILRRSGMYTIAMAYCGSGSNVATKRLLHVAVSDV 878
A A + + + R +L+ A G + L +
Sbjct: 171 -VRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELK 229
Query: 879 NDDVRREAVTALGFI 893
+ V + + A G +
Sbjct: 230 KNTVYDDIIEAAGEL 244
>d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage
phi-29 [TaxId: 10756]}
Length = 388
Score = 32.5 bits (73), Expect = 0.24
Identities = 12/76 (15%), Positives = 27/76 (35%)
Query: 913 KKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKK 972
+ K A+ +R+K + + K+ D + ++ + K K K KK+
Sbjct: 297 AHESTFKRAKYLRQKTYIQDIYMKEVDGKLVEGSPDDYTDIKFSVKCAGMTDKIKKEVTF 356
Query: 973 KKEAEKMKKKTEEAEK 988
+ +K +
Sbjct: 357 ENFKVGFSRKMKPKPV 372
Score = 27.9 bits (61), Expect = 7.3
Identities = 9/75 (12%), Positives = 20/75 (26%), Gaps = 2/75 (2%)
Query: 892 FILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKK--KKKDAEKMKKKGAE 949
R+K + + + + ++ M KK+ + K G
Sbjct: 305 AKYLRQKTYIQDIYMKEVDGKLVEGSPDDYTDIKFSVKCAGMTDKIKKEVTFENFKVGFS 364
Query: 950 KIGKKKKKKKKKKKK 964
+ K K +
Sbjct: 365 RKMKPKPVQVPGGVV 379
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 81
Score = 30.2 bits (68), Expect = 0.25
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 910 KIRKKKKKKKEAEKMRKKKGAEKMKKKKK--DAEKMKKKGAEKI 951
++ + K K+ AE M + K +K A++M + KI
Sbjct: 16 QLAIELKVKQGAENMIQTYSNGSTKDRKLLLTAQQMLQDSKTKI 59
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 30.3 bits (68), Expect = 0.27
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 18/95 (18%)
Query: 900 TRRKKKKGAEKIRKKKKKKKEAEKMRKKKGA------EKMKKKKKDAEKMKKKGAEKIGK 953
T R+ KK + +KKK+ ++ A E + + + K
Sbjct: 3 TPREPKK------RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLG 56
Query: 954 KK------KKKKKKKKKKKKKKKKKKKEAEKMKKK 982
+K ++K+ + K + KK+ + E E
Sbjct: 57 EKWKALTPEEKQPYEAKAQADKKRYESEKELYNAT 91
Score = 28.3 bits (63), Expect = 1.2
Identities = 8/67 (11%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 891 GFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEK 950
++ F + R + + K+ + K E+ + + A+ KK+ +
Sbjct: 27 AYMFFANEN--RDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESE 84
Query: 951 IGKKKKK 957
Sbjct: 85 KELYNAT 91
Score = 26.8 bits (59), Expect = 3.9
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 953 KKKKKKKKKKKKKKKKKKKKKK 974
++ KK+ +KKK K+
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKR 23
Score = 25.6 bits (56), Expect = 9.5
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 960 KKKKKKKKKKKKKKKEAEKMKK 981
++ KK+ +KKK+ K+
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKR 23
Score = 25.6 bits (56), Expect = 9.7
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 896 RKKRTRRKKKKGAEKIRKKKK------KKKEAEKMRKKKGAEKMKKKKKDAEKMKKK--G 947
R+ + R +KK K+ + + +R + + K + K
Sbjct: 5 REPKKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTP 64
Query: 948 AEKIGKKKKKKKKKKKKKKKKKKKKKKEA 976
EK + K + KK+ + +K+ A
Sbjct: 65 EEKQPYEAKAQADKKRYESEKELYNATLA 93
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 32.1 bits (72), Expect = 0.28
Identities = 8/68 (11%), Positives = 27/68 (39%)
Query: 898 KRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKK 957
+ + R + A + K E + E+ K + + + + EK+ ++ +
Sbjct: 181 QGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSRELDE 240
Query: 958 KKKKKKKK 965
+ + +++
Sbjct: 241 SRDRYRRR 248
Score = 31.3 bits (70), Expect = 0.41
Identities = 8/87 (9%), Positives = 33/87 (37%)
Query: 884 REAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKM 943
++ V G ++F RT + ++ K + + ++ +
Sbjct: 162 KDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDI 221
Query: 944 KKKGAEKIGKKKKKKKKKKKKKKKKKK 970
+ K +++ +K ++ + + + +++
Sbjct: 222 EFKSIDEVDFEKLSRELDESRDRYRRR 248
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 29.9 bits (67), Expect = 0.28
Identities = 14/84 (16%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 900 TRRKKKKGAEKIRKKKKKKKEA-----EKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKK 954
+ + ++G + +K K+ A E+ R++ E+ + + + ++ + + +K
Sbjct: 6 SGKPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEK 65
Query: 955 KKKKKKKKKKKKKKKKKKKKEAEK 978
KK K K ++ K + ++K
Sbjct: 66 KKAKYKAREAALKAQSERKSGPSS 89
Score = 29.5 bits (66), Expect = 0.44
Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 891 GFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEK 950
+F +++ R++ + + + + +M +K K K +K + K
Sbjct: 27 AMFIFSEEK--RRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERK 84
Query: 951 IG 952
G
Sbjct: 85 SG 86
Score = 27.2 bits (60), Expect = 3.0
Identities = 13/82 (15%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 905 KKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKK-KK 963
G+ ++ K +EK ++ A + ++K + +++ + + +
Sbjct: 2 SSGSSGKPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWND 61
Query: 964 KKKKKKKKKKKEAEKMKKKTEE 985
+KKK K K +K ++E
Sbjct: 62 LSEKKKAKYKAREAALKAQSER 83
>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p)
{Deinococcus radiodurans [TaxId: 1299]}
Length = 104
Score = 30.2 bits (68), Expect = 0.30
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 896 RKKRTRRKKKK---GAEKIR---KKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAE 949
RK RTRRK + + ++R + K A+ + +G + K
Sbjct: 2 RKLRTRRKVRTTTAASGRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAALKSGNKTDTA 61
Query: 950 K-IGKKKKKKKKKKKKKK 966
+GK +K K+
Sbjct: 62 AAVGKALAAAAAEKGIKQ 79
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 30.2 bits (68), Expect = 0.31
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 947 GAEKIGKKKKKKKKKKKKKKKKKKKKKKE 975
I K+ + + K+ +K+E
Sbjct: 73 WNHGILKEVVPEGYEMKRVGDYYVFEKRE 101
Score = 29.4 bits (66), Expect = 0.57
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 951 IGKKKKKKKKKKKKKKKKKKKKKKEAEKMK 980
+ K+ + + K+ EK +
Sbjct: 72 LWNHGILKEVVPEGYEMKRVGDYYVFEKRE 101
Score = 26.3 bits (58), Expect = 7.4
Identities = 3/28 (10%), Positives = 10/28 (35%)
Query: 955 KKKKKKKKKKKKKKKKKKKKEAEKMKKK 982
K+ + + K+ + +K+
Sbjct: 73 WNHGILKEVVPEGYEMKRVGDYYVFEKR 100
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA
probable tRNA-binding arm {Staphylococcus aureus [TaxId:
1280]}
Length = 65
Score = 29.3 bits (66), Expect = 0.32
Identities = 10/56 (17%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 927 KKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKK 982
+ + + K A K +K E KK K+ +++ ++K +E ++++++
Sbjct: 9 NEERDILNKDLNKALKDIEKRPEN--KKAHNKRDNLQQQLDANEQKIEEGKRLQEE 62
Score = 26.6 bits (59), Expect = 2.7
Identities = 11/58 (18%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 931 EKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
E +K+ ++ + + K + K +K+ + KK K+ +++ + ++K EE ++
Sbjct: 3 EYIKELNEERDILNKDLNKA--LKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKR 58
>gi|226355461|ref|YP_002785201.1|(51-121:121) putative 50S ribosomal
protein L7/L12 [Deinococcus deserti VCD115]
gi|226317451|gb|ACO45447.1| putative 50S ribosomal
protein L7/L12 [Deinococcus deserti VCD115] E=1e-26
s/c=1.72 id=88% cov=101%
Length = 71
Score = 29.2 bits (66), Expect = 0.33
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 955 KKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
K+ K +K K+ K +AEK+K + E A
Sbjct: 33 KEAKDMSEKGGVLKEGISKDDAEKIKAQLEGA 64
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 30.1 bits (67), Expect = 0.33
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 899 RTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKK 958
R +K K + K + R + + KK M + + K+
Sbjct: 29 RRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCI--YVGMAT---DLVLDDSKRL 83
Query: 959 KKKKKKKKKKKKKKKKEAEK 978
K+K ++ ++K++++E EK
Sbjct: 84 AKRKLIEENREKRRREELEK 103
Score = 28.6 bits (63), Expect = 1.1
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 957 KKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K+ K+K E + K++ EE EK
Sbjct: 72 ATDLVLDDSKRLAKRKLIEENREKRRREELEK 103
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 185
Score = 31.1 bits (70), Expect = 0.36
Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 900 TRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKK 959
T ++K + +R + + + A + ++ +K KD K + ++ +++ +K
Sbjct: 106 TEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKD--KEISEDEDRKAQEEIQKL 163
Query: 960 KKKKKKKKKKKKKKKEAEKMK 980
KK + KE E M+
Sbjct: 164 TDVAVKKIDEVLAAKEKELME 184
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 337
Score = 31.9 bits (72), Expect = 0.37
Identities = 11/91 (12%), Positives = 22/91 (24%)
Query: 898 KRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKK 957
R G + + + +E R E + + A +G +
Sbjct: 84 LRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLI 143
Query: 958 KKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
KKK E +++
Sbjct: 144 THTVPDAVPSVPKKKPDVMETRVGGGSVSDR 174
>d1kcfa2 c.55.3.7 (A:39-256) Mitochondrial resolvase ydc2 catalytic
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 218
Score = 31.2 bits (70), Expect = 0.42
Identities = 11/82 (13%), Positives = 25/82 (30%)
Query: 894 LFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGK 953
L ++ ++K K + KKK +M K+ +
Sbjct: 107 LHYAEKRNSIEQKIQYPFLLSLSPKSTYSYWASVLNTKASFSKKKSRVQMVKELIDGQKI 166
Query: 954 KKKKKKKKKKKKKKKKKKKKKE 975
+ ++ K + + KK+
Sbjct: 167 LFENEEALYKWNNGSRVEFKKD 188
Score = 30.4 bits (68), Expect = 0.81
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 7/81 (8%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEKM-------KKKKKDAEKMKKKGAEKIGKKKKKKKKK 961
E+ R + E + E M +K+ +K++ + K
Sbjct: 79 ERQRYRSGIATIPEWTLRVNMLESMLYALHYAEKRNSIEQKIQYPFLLSLSPKSTYSYWA 138
Query: 962 KKKKKKKKKKKKKEAEKMKKK 982
K KKK +M K+
Sbjct: 139 SVLNTKASFSKKKSRVQMVKE 159
Score = 28.1 bits (62), Expect = 4.2
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 926 KKKGAEKMKKKKKDAEKM--KKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKT 983
+K+ + + K + + K + K KKK + + K+ + +K+ +
Sbjct: 111 EKRNSIEQKIQYPFLLSLSPKSTYSYWASVLNTKASFSKKKSRVQMVKELIDGQKILFEN 170
Query: 984 EEAEK 988
EEA
Sbjct: 171 EEALY 175
>d1g7da_ a.71.1.1 (A:) Endoplasmic reticulum protein ERP29,
C-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 106
Score = 29.8 bits (67), Expect = 0.46
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 914 KKKKKKEAEKMRKKKGAEKMKKKK------KDAEKMKKKGAEKIGKKKKKKKKKKKKKKK 967
++ ++ ++ + K KK K K+ +G + + + K + K
Sbjct: 20 REARQAILKQGQDGLSGVKETDKKWASQYLKIMGKILDQGEDFPASELARISKLIENKMS 79
Query: 968 KKKK 971
+ KK
Sbjct: 80 EGKK 83
Score = 29.0 bits (65), Expect = 0.92
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 908 AEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKK-----KKKKKKKK 962
+ I ++ ++A + + G +K+ K K KI + + +
Sbjct: 12 GQFIEASSREARQAILKQGQDGLSGVKETDKKWASQYLKIMGKILDQGEDFPASELARIS 71
Query: 963 KKKKKKKKKKKKEAEKMKK 981
K + K + KKE +
Sbjct: 72 KLIENKMSEGKKEELQRSL 90
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 29.6 bits (66), Expect = 0.64
Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKK 968
EK+ + + K+ E + + +G E+++ + E++ + I K KKK
Sbjct: 58 EKLERARATTKKIEDLTELEGWEELEDN--EKEQITQH----IADLSSKAAGTPKKKAVV 111
Query: 969 KKK 971
+ K
Sbjct: 112 QAK 114
Score = 27.3 bits (60), Expect = 4.2
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 926 KKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKK-----KKKKKKKKKKKKKEAEKM 979
K + A KK +D +++ G E++ +K++ + K KKK K+
Sbjct: 59 KLERARATTKKIEDLTELE--GWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAKL 115
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 140
Score = 30.0 bits (67), Expect = 0.68
Identities = 9/54 (16%), Positives = 26/54 (48%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKK 962
E++ K +K+ + R + G +++ K ++ + + + K+ K+K+
Sbjct: 87 EELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKE 140
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 29.8 bits (67), Expect = 0.70
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 956 KKKKKKKKKKKKKKKKKKKEAEKMKKKTE 984
K K K K +++ K + + E ++ K +
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKED 30
Score = 29.8 bits (67), Expect = 0.80
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 960 KKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K K K K +++ K E E K++ E
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKED 30
Score = 29.4 bits (66), Expect = 1.1
Identities = 5/26 (19%), Positives = 16/26 (61%)
Query: 952 GKKKKKKKKKKKKKKKKKKKKKKEAE 977
G K +++ K + + +K++ K++ +
Sbjct: 7 GGKNRRRGKNENESEKRELVFKEDGQ 32
Score = 28.3 bits (63), Expect = 2.2
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 957 KKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
K K K K +++ K + + ++ E+ +
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKEDGQ 32
Score = 27.9 bits (62), Expect = 2.9
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 955 KKKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
K K K K +++ K + + ++ E + K+ +
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKEDGQ 32
Score = 27.9 bits (62), Expect = 3.1
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 954 KKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEE 985
K K K K +++ K + + +K K+ +E
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKEDGQE 33
Score = 27.9 bits (62), Expect = 3.2
Identities = 6/37 (16%), Positives = 17/37 (45%)
Query: 950 KIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
K K +++ K + + +K++ KE + + +
Sbjct: 4 KGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKM 40
Score = 27.5 bits (61), Expect = 4.8
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 942 KMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKK 974
K K KG GK +++ K + + +K++ K+
Sbjct: 2 KNKGKG----GKNRRRGKNENESEKRELVFKED 30
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 28.6 bits (64), Expect = 0.74
Identities = 5/19 (26%), Positives = 6/19 (31%)
Query: 952 GKKKKKKKKKKKKKKKKKK 970
G +K KKK
Sbjct: 1 GSSGSSGRKPPPKKKMTGT 19
Score = 26.3 bits (58), Expect = 5.7
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 954 KKKKKKKKKKKKKKKKKK 971
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 26.3 bits (58), Expect = 5.7
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 955 KKKKKKKKKKKKKKKKKK 972
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 26.3 bits (58), Expect = 5.7
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 956 KKKKKKKKKKKKKKKKKK 973
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 26.3 bits (58), Expect = 5.7
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 957 KKKKKKKKKKKKKKKKKK 974
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS)
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 66
Score = 28.1 bits (63), Expect = 0.74
Identities = 9/56 (16%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 931 EKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
+ +K+ K+ + ++ K+ ++K K+ + ++ + KE + ++ EA
Sbjct: 7 RRQEKRLKELLALAERSQRKLA-SPGFREKAPKEVVEAEEARLKENLEQAERIREA 61
>d2qam31 d.301.1.1 (3:1-64) Ribosomal protein L35p {Escherichia coli
[TaxId: 562]}
Length = 64
Score = 28.1 bits (63), Expect = 0.79
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 923 KMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
K++ +GA K KK K K A KK K+K+ + K K + +
Sbjct: 2 KIKTVRGAAKRFKKTGKG-GFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIA 59
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia
coli [TaxId: 562]}
Length = 185
Score = 30.3 bits (68), Expect = 0.80
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 896 RKKRTRRKKKKGAEK-------IRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGA 948
R+K + + AE+ +R+ K +A K+ + ++ + D +K+
Sbjct: 109 RRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAI 168
Query: 949 EKIGKKKKKKKK 960
+KI K+
Sbjct: 169 KKIEAALADKEA 180
Score = 28.8 bits (64), Expect = 2.4
Identities = 10/68 (14%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 919 KEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEK 978
++ + AE+ + ++ ++ +K+ K K+ + ++ + +K +
Sbjct: 110 RKDLTKIVRGEAEQARVAVRNV---RRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDA 166
Query: 979 MKKKTEEA 986
KK E A
Sbjct: 167 AIKKIEAA 174
Score = 28.4 bits (63), Expect = 3.5
Identities = 11/56 (19%), Positives = 23/56 (41%)
Query: 933 MKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K + +AE+ + K K K K+ + ++ + ++K T+ A K
Sbjct: 114 TKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIK 169
Score = 26.9 bits (59), Expect = 8.7
Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 925 RKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKM-KKKT 983
R+K + ++ + + A + K K K K+ + ++ + + +K+
Sbjct: 109 RRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAI 168
Query: 984 EEAEK 988
++ E
Sbjct: 169 KKIEA 173
>d2j0181 d.301.1.1 (8:2-65) Ribosomal protein L35p {Thermus
thermophilus [TaxId: 274]}
Length = 64
Score = 28.1 bits (63), Expect = 0.88
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 923 KMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
KM+ KGA+K K K+ K +K K+ ++K +K K EAE++K
Sbjct: 2 KMKTHKGAKKRVKITASG-KVVAMKTGKRHLNWQKSGKEIRQKGRKFVLAKPEAERIKL 59
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Length = 97
Score = 28.5 bits (64), Expect = 0.98
Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 14/85 (16%)
Query: 918 KKEAEKMRK--KKGAEKMKKKKKDAEKM---------KKKGAEKIGKK---KKKKKKKKK 963
+ E +KM + + AE +K ++ + +K E+ G K K +
Sbjct: 3 EDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESA 62
Query: 964 KKKKKKKKKKKEAEKMKKKTEEAEK 988
+ K ++ ++ K +E +
Sbjct: 63 LTALETALKGEDKAAIEAKMQELAQ 87
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 30.4 bits (68), Expect = 1.0
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 944 KKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTE 984
+G E K + +K++ K K+ ++K T
Sbjct: 199 HAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITP 239
Score = 29.6 bits (66), Expect = 1.9
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 954 KKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAE 987
K + +K++ K + + +K E
Sbjct: 208 KDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIE 241
>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus
thermophilus [TaxId: 274]}
Length = 138
Score = 29.2 bits (65), Expect = 1.1
Identities = 6/35 (17%), Positives = 18/35 (51%)
Query: 954 KKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+ ++ ++K + +K+ ++ + EEA+K
Sbjct: 103 RNLSDREIRRKLRADRKRIDQDRAAERAAKEEAQK 137
Score = 28.0 bits (62), Expect = 3.4
Identities = 8/49 (16%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 932 KMKKKKKDAEK--MKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEK 978
+ + + A+ ++ +I +K + +K+ + + ++ K+EA+K
Sbjct: 89 VQRGRARRAKLYFIRNLSDREIRRKLRADRKRIDQDRAAERAAKEEAQK 137
Score = 27.3 bits (60), Expect = 5.6
Identities = 4/35 (11%), Positives = 17/35 (48%)
Query: 952 GKKKKKKKKKKKKKKKKKKKKKKEAEKMKKKTEEA 986
++ ++K + +K+ + + K++ ++A
Sbjct: 104 NLSDREIRRKLRADRKRIDQDRAAERAAKEEAQKA 138
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15
{Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 28.0 bits (62), Expect = 1.5
Identities = 10/60 (16%), Positives = 24/60 (40%)
Query: 910 KIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKK 969
K K K K+ + G K + ++ K + K+++ +K +++ + K
Sbjct: 24 KCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRVLKYVDTNLQKQRELQKANQEQYAEGK 83
>d2c0ga1 a.71.1.1 (A:1146-1251) Windbeutel, C-terminal domain {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 106
Score = 28.2 bits (63), Expect = 1.5
Identities = 11/68 (16%), Positives = 31/68 (45%)
Query: 904 KKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKK 963
AE+++ +K + + E++ + + + K+ + G + + ++ K+ + K
Sbjct: 17 NIPDAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKIHEVGYDFLEEETKRLLRLKA 76
Query: 964 KKKKKKKK 971
K + KK
Sbjct: 77 GKVTEAKK 84
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p)
{Escherichia coli [TaxId: 562]}
Length = 113
Score = 28.4 bits (63), Expect = 1.6
Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 897 KKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAE-KIGKKK 955
KK R ++ + R+K ++ ++ + + + + A + K
Sbjct: 1 KKSARIRRAT---RARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAI 56
Query: 956 KKKKKKKKKKKKKKKKKKKEAEKMKKK 982
++ K K K AE+ +K
Sbjct: 57 AEQLKYTGNKDAAAAVGKAVAERALEK 83
>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis
protein SpsE, N-terminal domain {Bacillus subtilis
[TaxId: 1423]}
Length = 295
Score = 29.6 bits (65), Expect = 1.6
Identities = 6/45 (13%), Positives = 12/45 (26%), Gaps = 7/45 (15%)
Query: 931 EKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKE 975
++M + E + + K +K K E
Sbjct: 257 KEMVDGIRKTEAE-------LKQGITKPVSEKLLGSSYKTTTAIE 294
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 29.3 bits (65), Expect = 1.7
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 954 KKKKKKKKKKKKKKKKKKKKKEA 976
K K++ + + + + +KEA
Sbjct: 160 PKPKREAFLEANRAELVRFQKEA 182
Score = 28.6 bits (63), Expect = 3.0
Identities = 4/25 (16%), Positives = 14/25 (56%)
Query: 949 EKIGKKKKKKKKKKKKKKKKKKKKK 973
E++ K K++ + + + + +K+
Sbjct: 157 ERLPKPKREAFLEANRAELVRFQKE 181
>d1je5a_ b.40.4.7 (A:) gp2.5 {Bacteriophage T7 [TaxId: 10760]}
Length = 197
Score = 29.2 bits (65), Expect = 1.7
Identities = 6/79 (7%), Positives = 21/79 (26%), Gaps = 6/79 (7%)
Query: 914 KKKKKKEAEKMRKKKGAEK----MKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKK 969
K E +G K + K ++M + + ++ ++ +
Sbjct: 21 KPDYGNEERGFGNPRGVYKVDLTIPNKDPRCQRMVDEIVKCH--EEAYAAAVEEYEANPP 78
Query: 970 KKKKKEAEKMKKKTEEAEK 988
+ + + +
Sbjct: 79 AVARGKKPLKPYEGDMPFF 97
Score = 28.8 bits (64), Expect = 2.4
Identities = 10/83 (12%), Positives = 19/83 (22%), Gaps = 5/83 (6%)
Query: 903 KKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKK 962
K +++ + K E + E + K K +
Sbjct: 46 NKDPRCQRMVDEIVKCHEEAYAAAVEEYEANPPA-----VARGKKPLKPYEGDMPFFDNG 100
Query: 963 KKKKKKKKKKKKEAEKMKKKTEE 985
K K + K K +
Sbjct: 101 DGTTTFKFKCYASFQDKKTKETK 123
Score = 28.5 bits (63), Expect = 3.6
Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 7/91 (7%)
Query: 904 KKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKK--- 960
K R + K E+ E+ + + KK G
Sbjct: 45 PNKDPRCQRMVDEIVKCHEEA-YAAAVEEYEANPPAVARGKKPLKPYEGDMPFFDNGDGT 103
Query: 961 ---KKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
K K + KK KE + + +++
Sbjct: 104 TTFKFKCYASFQDKKTKETKHINLVVVDSKG 134
>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia
coli [TaxId: 562]}
Length = 103
Score = 28.2 bits (63), Expect = 1.8
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKK 968
EK+ + E ++ E++K + K AE + + +K K K +++K
Sbjct: 23 EKLDIATGETVEFAEVLMIANGEEVKIGVPFVDGGVIK-AEVVAHGRGEKVKIVKFRRRK 81
Query: 969 KKKKKK 974
+K++
Sbjct: 82 HYRKQQ 87
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 28.4 bits (63), Expect = 1.8
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 959 KKKKKKKKKKKKKKKKEAEKMKKK 982
+ +K KKK+++ + +K+K
Sbjct: 82 NANRAFQKMDTKKKEEQLKLLKEK 105
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus
thermophilus [TaxId: 274]}
Length = 185
Score = 28.8 bits (64), Expect = 2.5
Identities = 8/58 (13%), Positives = 25/58 (43%)
Query: 903 KKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKK 960
+ + IR++ K + ++ K+ + + +K+ + K + +KK++
Sbjct: 124 EGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKEQ 181
Score = 28.0 bits (62), Expect = 3.9
Identities = 15/75 (20%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 900 TRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKD---AEKMKKKGAEKIGKKKK 956
T ++K +R+ ++ + A + +++ +K+KK K+ +E K+ +I K
Sbjct: 107 TEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITD 166
Query: 957 KKKKKKKKKKKKKKK 971
+ K + +KK++
Sbjct: 167 EFIAKADQLAEKKEQ 181
>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex
aeolicus [TaxId: 63363]}
Length = 184
Score = 28.4 bits (63), Expect = 2.8
Identities = 10/65 (15%), Positives = 31/65 (47%)
Query: 896 RKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKK 955
+ + ++ ++R +++ KE + + ++ K+ + +K+ K ++I K
Sbjct: 115 LVRLLHKITEEARVRVRNVRREAKEMIEELEGISEDEKKRALERLQKLTDKYIDEINKLM 174
Query: 956 KKKKK 960
+ K+K
Sbjct: 175 EAKEK 179
>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus
thermophilus [TaxId: 274]}
Length = 101
Score = 27.1 bits (60), Expect = 3.6
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKK 968
EK+ + E + + + + AE +G + KK K K K
Sbjct: 23 EKLDAEPGATVELPVLLLGGEKTVVGTPVVEGASVV---AEVLGHGRGKKILVSKFKAKV 79
Query: 969 KKKKKK 974
+ ++KK
Sbjct: 80 QYRRKK 85
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 29.0 bits (64), Expect = 3.9
Identities = 15/134 (11%), Positives = 43/134 (32%), Gaps = 18/134 (13%)
Query: 873 VAVSDVNDDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEK 932
+ V++ + + + LGF F K+ E + K ++ + +
Sbjct: 620 LTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHE 679
Query: 933 MKKKKKDAEKMKKKGA----------------EKIGKKKKKKKKKKKKKKKKKKKK--KK 974
+ + + +K+ K+K++K+ + + K K
Sbjct: 680 DTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNT 739
Query: 975 EAEKMKKKTEEAEK 988
+ + + +E +
Sbjct: 740 DLKAFEVGYQEFLQ 753
>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 183
Score = 28.0 bits (62), Expect = 4.0
Identities = 11/58 (18%), Positives = 27/58 (46%)
Query: 903 KKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKK 960
+ K IR+K ++ + + G +++ + +KD +K + +I + K K+
Sbjct: 122 EAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEG 179
Score = 26.8 bits (59), Expect = 9.6
Identities = 8/65 (12%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 925 RKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKM-KKKT 983
R+++ ++ K K ++A+ + K ++ + +K+ + + + + +K+ +K +
Sbjct: 108 RRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYV 167
Query: 984 EEAEK 988
+ ++
Sbjct: 168 TQIDE 172
>d1evsa_ a.26.1.1 (A:) Oncostatin M {Human (Homo sapiens) [TaxId:
9606]}
Length = 184
Score = 28.1 bits (62), Expect = 4.1
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 155 ATPDTEAPTPAPGTESGPSSTTPGPET 181
DT PT A S P + TP +
Sbjct: 130 DNSDTAEPTKAGRGASQPPTPTPASDA 156
>d1vk1a_ d.268.1.2 (A:) Hypothetical protein PF0380 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 232
Score = 28.0 bits (62), Expect = 4.3
Identities = 11/110 (10%), Positives = 27/110 (24%), Gaps = 5/110 (4%)
Query: 868 KRLLHVAVSDVNDDVRREAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRKK 927
K + + L K + ++ K+ M K
Sbjct: 123 KAEKGEIAFALIGEKSFAIPGGLEEQKKVSKVLDEMDQAKEIELVYYGLKEDAKADMEKG 182
Query: 928 KGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAE 977
+ +K K+ ++ K+ + K + K + +
Sbjct: 183 EIDYVFIRKA-----PTKEEVMELVKRGEVFSPKTTRHVLPFIPDKIDVK 227
>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 97
Score = 26.7 bits (59), Expect = 4.4
Identities = 8/48 (16%), Positives = 18/48 (37%)
Query: 911 IRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKK 958
I K + K+ + A+K+ + A++ +K K+
Sbjct: 22 IDDTKSATIVSASTLDKEFGLDSTNNIEAAKKVGELVAKRALEKGIKQ 69
>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus
thermophilus [TaxId: 274]}
Length = 86
Score = 26.6 bits (59), Expect = 4.5
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 926 KKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKK 966
K + K + A ++G+ +K K+
Sbjct: 22 KGVTLVSASSLALKLKGNKTEVARQVGRALAEKALALGIKQ 62
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
PAC) {Streptococcus mutans [TaxId: 1309]}
Length = 377
Score = 28.5 bits (63), Expect = 4.7
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 959 KKKKKKKKKKKKKKKKEAEKMKKKTEEAEK 988
+K K K + E +K E EK
Sbjct: 1 QKDLADYPVKLKAYEDEQASIKAALAELEK 30
>d1sqna_ a.123.1.1 (A:) Progesterone receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 251
Score = 28.1 bits (62), Expect = 5.2
Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 1/104 (0%)
Query: 166 PGTESGPSSTTPGPETKTLESLNEKEKQLQARITKLSKILSGEVSIDLHLQF-LIRSNKT 224
+G +T P + L SLN+ ++ + K SK L G ++ + Q LI+ +
Sbjct: 16 DVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWM 75
Query: 225 DMLILKNTKESIRVSICHTATIIANAFMHSGTTSDQFLRDNLEW 268
+++ S + + ++ +
Sbjct: 76 SLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLT 119
>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 92
Score = 26.3 bits (58), Expect = 5.3
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 14/85 (16%)
Query: 885 EAVTALGFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRK--KKGAEKMKKKKKDAEK 942
E +TAL K+R + + I++ A +K +
Sbjct: 15 EGLTAL------KERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGD---F 65
Query: 943 MKKKGAE---KIGKKKKKKKKKKKK 964
+ KG K+ KKK + KK+K+
Sbjct: 66 EQPKGPAGAVKLAKKKSPEVKKEKE 90
>d1diva1 d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 94
Score = 26.3 bits (58), Expect = 5.8
Identities = 12/70 (17%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 912 RKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKK 971
R+ ++ A+K++++ + K E + G+ I K+ + + + K K+
Sbjct: 1 RQAAEELANAKKLKEQLEKLTVTIPAKAGEGGRLFGS--ITSKQIAESLQAQHGLKLDKR 58
Query: 972 KKKEAEKMKK 981
K + A+ ++
Sbjct: 59 KIELADAIRA 68
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 237
Score = 27.8 bits (61), Expect = 6.4
Identities = 7/52 (13%), Positives = 25/52 (48%)
Query: 930 AEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
+ +++ + + KK + KKK++ K ++ ++ ++ ++ K+
Sbjct: 138 DKDLREIQSALQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKE 189
>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 93
Score = 26.2 bits (58), Expect = 6.9
Identities = 6/40 (15%), Positives = 15/40 (37%)
Query: 937 KKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEA 976
K ++ I K+K+ + ++ +K+A
Sbjct: 38 KDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKA 77
>d1nhza_ a.123.1.1 (A:) Glucocorticoid receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 27.8 bits (61), Expect = 7.0
Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 5/111 (4%)
Query: 166 PGTESGPSSTTPGPETKTLESLNEKEKQLQARITKLSKILSGEVSIDLHLQF-LIRSNKT 224
+G S+ P + + +LN + K +K + G ++ L Q L++ +
Sbjct: 13 EVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWM 72
Query: 225 DMLILKNTKESIRVS----ICHTATIIANAFMHSGTTSDQFLRDNLEWLAR 271
++ S R S +C +I N + + L +
Sbjct: 73 SLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPDMYDQCKHMLYVSSE 123
>gi|94984680|ref|YP_604044.1|(2-62:67) 50S ribosomal protein L35
[Deinococcus geothermalis DSM 11300]
gi|145572732|sp|Q1J0V9.1|RL35_DEIGD RecName: Full=50S
ribosomal protein L35 gi|94554961|gb|ABF44875.1|
ribosomal protein L35 [Deinococcus geothermalis DSM
11300] E=4e-21 s/c=1.69 id=84% cov=98%
Length = 61
Score = 25.4 bits (56), Expect = 7.3
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 923 KMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKKKKEAEKMKK 981
KM+ KK + K K+ + K + K + + K K K E +MK
Sbjct: 2 KMKTKKSMTRRVKVTATG-KVMAFKSGKRHQNTGKSGDEIRGKGKGFVLAKSEWARMKL 59
>d1ospo_ b.76.1.1 (O:) Outer surface protein A {Lyme disease
spirochete (Borrelia burgdorferi) [TaxId: 139]}
Length = 251
Score = 27.5 bits (61), Expect = 7.4
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 926 KKKGAEKMKKKKKDAEKMKKKGAEKIGKKK----KKKKKKKKKKKKKKKKKKKEAEKMKK 981
K G+ ++ K D K+K ++ +G+ K+ K KK K K EK +
Sbjct: 47 KNNGSGVLEGVKADKCKVKLTISDDLGQTTLEVFKEDGKTLVSKKVTSKDKSSTEEKFNE 106
Query: 982 KTEEAEK 988
K E +EK
Sbjct: 107 KGEVSEK 113
>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus
radiodurans [TaxId: 1299]}
Length = 94
Score = 25.9 bits (57), Expect = 7.8
Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 909 EKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKK 968
E ++ + K E + + + + AE + + KK +K K
Sbjct: 19 ESLQGEAGDKVELKAL----FVGGEQTVFGEDAGKYTVQAEVVEHGRGKKIYIRKYKSGV 74
Query: 969 KKKKKK 974
+ +++
Sbjct: 75 QYRRRT 80
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga
maritima [TaxId: 2336]}
Length = 184
Score = 27.3 bits (60), Expect = 7.8
Identities = 12/64 (18%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 897 KKRTRRKKKKGAEKIRKKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKK 956
K R +++ +KI++ +K+ E + K+ + + +K+ + EK+ + +
Sbjct: 124 KIAIRNIRREILKKIKEDQKEGLIPE--------DDAKRLENEIQKLTDEFIEKLDEVFE 175
Query: 957 KKKK 960
KK+
Sbjct: 176 IKKE 179
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 411
Score = 27.4 bits (60), Expect = 8.9
Identities = 14/123 (11%), Positives = 34/123 (27%), Gaps = 15/123 (12%)
Query: 875 VSDVNDDVRREAVTAL--GFILFRKKRTRRKKKKGAEKIRKKKKKKKEAEKMRK-KKGAE 931
V V+ + + + ++ K K + + +K +
Sbjct: 288 VVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGD 347
Query: 932 KMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKK------------KKKKKKKKKKKEAEKM 979
++ + K + G+ K K KK + + +E E++
Sbjct: 348 LLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEEEERL 407
Query: 980 KKK 982
K
Sbjct: 408 YIK 410
>d1vqo31 g.41.8.3 (3:1-92) Ribosomal protein L44e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 92
Score = 25.8 bits (57), Expect = 9.4
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 913 KKKKKKKEAEKMRKKKGAEKMKKKKKDAEKMKKKGAEKIGKKKKKKKKKKKKKKKKKKKK 972
+ +E E + + G ++ +++ IG K K K KK
Sbjct: 12 PHCNEHQEHEVEKVRSG----RQTGMKWIDRQRERNSGIGNDGKFSKVPGGDKPTKKTDL 67
Query: 973 KKEAEKMKKKT 983
K + K
Sbjct: 68 KYRCGECGKAH 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.376
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,506,625
Number of extensions: 171406
Number of successful extensions: 2180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1565
Number of HSP's successfully gapped: 229
Length of query: 988
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 894
Effective length of database: 1,116,976
Effective search space: 998576544
Effective search space used: 998576544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)