BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6895
(63 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P13002|ELF1_DROME Protein grainyhead OS=Drosophila melanogaster GN=grh PE=2 SV=3
Length = 1333
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/31 (93%), Positives = 31/31 (100%)
Query: 27 SIVMLMFREEKSPEDEIKAWQFWHSRQHSVK 57
S++MLMFREEKSPEDEIKAWQFWHSRQHSVK
Sbjct: 952 SVIMLMFREEKSPEDEIKAWQFWHSRQHSVK 982
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 26/26 (100%), Positives = 26/26 (100%)
Query: 1 MLMFREEKSPEDEIKAWQFWHSRQHS 26
MLMFREEKSPEDEIKAWQFWHSRQHS
Sbjct: 955 MLMFREEKSPEDEIKAWQFWHSRQHS 980
>sp|Q5PPL8|GRHL3_XENLA Grainyhead-like protein 3 homolog OS=Xenopus laevis GN=grhl3 PE=2
SV=1
Length = 595
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 13 EIKAWQFWHSRQHSSIVMLMFREEKSPEDEIKAWQFWHSRQHSVK 57
EI+ S + S+VM++F EK+PE+++K W+ WHSRQ + K
Sbjct: 261 EIRKCVHLTSNKVKSVVMVVFDNEKNPEEQLKRWKHWHSRQPTAK 305
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 1 MLMFREEKSPEDEIKAWQFWHSRQHSS 27
M++F EK+PE+++K W+ WHSRQ ++
Sbjct: 278 MVVFDNEKNPEEQLKRWKHWHSRQPTA 304
>sp|Q5M7R9|GRHL2_XENTR Grainyhead-like protein 2 homolog OS=Xenopus tropicalis GN=grhl2
PE=2 SV=1
Length = 619
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 27/31 (87%)
Query: 27 SIVMLMFREEKSPEDEIKAWQFWHSRQHSVK 57
S++M++F E+K+ ++++K W++WHSRQH+ K
Sbjct: 293 SVIMVVFSEDKNRDEQLKYWKYWHSRQHTAK 323
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 24/27 (88%)
Query: 1 MLMFREEKSPEDEIKAWQFWHSRQHSS 27
M++F E+K+ ++++K W++WHSRQH++
Sbjct: 296 MVVFSEDKNRDEQLKYWKYWHSRQHTA 322
>sp|Q6GL65|GRHL3_XENTR Grainyhead-like protein 3 homolog OS=Xenopus tropicalis GN=grhl3
PE=2 SV=1
Length = 594
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 27/36 (75%)
Query: 22 SRQHSSIVMLMFREEKSPEDEIKAWQFWHSRQHSVK 57
S + S+VM++F EK+PE+++K W+ WHSRQ + K
Sbjct: 269 SNKVKSVVMVVFDNEKNPEEQLKRWKHWHSRQPTAK 304
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 1 MLMFREEKSPEDEIKAWQFWHSRQHSS 27
M++F EK+PE+++K W+ WHSRQ ++
Sbjct: 277 MVVFDNEKNPEEQLKRWKHWHSRQPTA 303
>sp|Q921D9|GRHL1_MOUSE Grainyhead-like protein 1 homolog OS=Mus musculus GN=Grhl1 PE=1
SV=1
Length = 618
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 27/31 (87%)
Query: 27 SIVMLMFREEKSPEDEIKAWQFWHSRQHSVK 57
S++M++F E+KS ED+++ W++WHSRQH+ K
Sbjct: 302 SVIMVVFAEDKSREDQLRHWKYWHSRQHTAK 332
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 24/27 (88%)
Query: 1 MLMFREEKSPEDEIKAWQFWHSRQHSS 27
M++F E+KS ED+++ W++WHSRQH++
Sbjct: 305 MVVFAEDKSREDQLRHWKYWHSRQHTA 331
>sp|Q9NZI5|GRHL1_HUMAN Grainyhead-like protein 1 homolog OS=Homo sapiens GN=GRHL1 PE=1
SV=2
Length = 618
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 27/31 (87%)
Query: 27 SIVMLMFREEKSPEDEIKAWQFWHSRQHSVK 57
S++M++F E+KS ED+++ W++WHSRQH+ K
Sbjct: 302 SVIMVVFAEDKSREDQLRHWKYWHSRQHTAK 332
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 24/27 (88%)
Query: 1 MLMFREEKSPEDEIKAWQFWHSRQHSS 27
M++F E+KS ED+++ W++WHSRQH++
Sbjct: 305 MVVFAEDKSREDQLRHWKYWHSRQHTA 331
>sp|Q5EY87|GRHL1_XENLA Grainyhead-like protein 1 homolog OS=Xenopus laevis GN=grhl1 PE=2
SV=1
Length = 609
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 27/31 (87%)
Query: 27 SIVMLMFREEKSPEDEIKAWQFWHSRQHSVK 57
S++M++F ++KS ED+++ W++WHSRQH+ K
Sbjct: 293 SVIMVVFADDKSREDQLRHWKYWHSRQHTAK 323
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 24/27 (88%)
Query: 1 MLMFREEKSPEDEIKAWQFWHSRQHSS 27
M++F ++KS ED+++ W++WHSRQH++
Sbjct: 296 MVVFADDKSREDQLRHWKYWHSRQHTA 322
>sp|Q5RAR8|GRHL1_PONAB Grainyhead-like protein 1 homolog OS=Pongo abelii GN=GRHL1 PE=2
SV=1
Length = 618
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 26/31 (83%)
Query: 27 SIVMLMFREEKSPEDEIKAWQFWHSRQHSVK 57
S+ M++F E+KS ED+++ W++WHSRQH+ K
Sbjct: 302 SVTMVVFAEDKSREDQLRHWKYWHSRQHTAK 332
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 24/27 (88%)
Query: 1 MLMFREEKSPEDEIKAWQFWHSRQHSS 27
M++F E+KS ED+++ W++WHSRQH++
Sbjct: 305 MVVFAEDKSREDQLRHWKYWHSRQHTA 331
>sp|Q8K5C0|GRHL2_MOUSE Grainyhead-like protein 2 homolog OS=Mus musculus GN=Grhl2 PE=2
SV=1
Length = 625
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 27/31 (87%)
Query: 27 SIVMLMFREEKSPEDEIKAWQFWHSRQHSVK 57
S+VM++F E+K+ ++++K W++WHSRQH+ K
Sbjct: 298 SVVMVVFSEDKNRDEQLKYWKYWHSRQHTAK 328
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 24/27 (88%)
Query: 1 MLMFREEKSPEDEIKAWQFWHSRQHSS 27
M++F E+K+ ++++K W++WHSRQH++
Sbjct: 301 MVVFSEDKNRDEQLKYWKYWHSRQHTA 327
>sp|Q6ISB3|GRHL2_HUMAN Grainyhead-like protein 2 homolog OS=Homo sapiens GN=GRHL2 PE=1
SV=1
Length = 625
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 27/31 (87%)
Query: 27 SIVMLMFREEKSPEDEIKAWQFWHSRQHSVK 57
S+VM++F E+K+ ++++K W++WHSRQH+ K
Sbjct: 298 SVVMVVFSEDKNRDEQLKYWKYWHSRQHTAK 328
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 24/27 (88%)
Query: 1 MLMFREEKSPEDEIKAWQFWHSRQHSS 27
M++F E+K+ ++++K W++WHSRQH++
Sbjct: 301 MVVFSEDKNRDEQLKYWKYWHSRQHTA 327
>sp|Q8TE85|GRHL3_HUMAN Grainyhead-like protein 3 homolog OS=Homo sapiens GN=GRHL3 PE=1
SV=3
Length = 626
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 22 SRQHSSIVMLMFREEKSPEDEIKAWQFWHSRQHSVK 57
S + S+VM++F EK P ++++ W+ WHSRQ + K
Sbjct: 276 SNKVKSVVMVVFDNEKVPVEQLRFWKHWHSRQPTAK 311
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 1 MLMFREEKSPEDEIKAWQFWHSRQHSS 27
M++F EK P ++++ W+ WHSRQ ++
Sbjct: 284 MVVFDNEKVPVEQLRFWKHWHSRQPTA 310
>sp|Q5FWH3|GRHL3_MOUSE Grainyhead-like protein 3 homolog OS=Mus musculus GN=Grhl3 PE=2
SV=1
Length = 603
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 33 FREEKSPEDEIKAWQFWHSRQHSVK 57
F +K P ++++ W+ WHSRQ + K
Sbjct: 287 FDNDKVPVEQLRFWRHWHSRQPTAK 311
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 4 FREEKSPEDEIKAWQFWHSRQHSS 27
F +K P ++++ W+ WHSRQ ++
Sbjct: 287 FDNDKVPVEQLRFWRHWHSRQPTA 310
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.132 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,305,415
Number of Sequences: 539616
Number of extensions: 753049
Number of successful extensions: 1772
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1748
Number of HSP's gapped (non-prelim): 24
length of query: 63
length of database: 191,569,459
effective HSP length: 35
effective length of query: 28
effective length of database: 172,682,899
effective search space: 4835121172
effective search space used: 4835121172
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)