Query psy6895
Match_columns 63
No_of_seqs 63 out of 65
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 21:12:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6895.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6895hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f40_A Hypothetical protein PF 44.5 12 0.0004 23.5 1.9 17 29-45 48-64 (96)
2 2jyp_A Aragonite protein AP7; 33.0 14 0.00047 19.3 0.7 12 52-63 19-30 (36)
3 1p15_A Protein-tyrosine phosph 11.5 93 0.0032 20.5 1.3 27 23-52 75-101 (253)
4 1a7g_E E2 DBD, regulatory prot 10.4 51 0.0017 19.5 -0.2 11 38-48 10-20 (82)
5 1r8h_A Regulatory protein E2; 10.0 54 0.0018 19.6 -0.2 11 38-48 11-21 (87)
6 1f9f_A Regulatory protein E2; 9.7 53 0.0018 19.5 -0.4 11 38-48 12-22 (83)
7 2bop_A Protein (E2); protein-D 9.6 57 0.0019 19.4 -0.2 10 39-48 9-18 (85)
8 2q79_A Regulatory protein E2; 9.4 58 0.002 19.8 -0.2 10 39-48 10-19 (93)
9 1dbd_A Regulatory protein E2; 9.1 61 0.0021 19.9 -0.2 11 38-48 23-33 (100)
10 3i36_A Vascular protein tyrosi 8.1 1.4E+02 0.0049 20.8 1.3 28 23-53 135-162 (342)
No 1
>2f40_A Hypothetical protein PF1455; protein structure prediction, residual dipolar couplings, PY furious, simulated annealing, structural genomics; NMR {Pyrococcus furiosus} SCOP: i.11.1.1
Probab=44.48 E-value=12 Score=23.53 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=14.4
Q ss_pred eEEeeecCCCcHHHHhh
Q psy6895 29 VMLMFREEKSPEDEIKA 45 (63)
Q Consensus 29 ~mvVf~e~K~~e~elk~ 45 (63)
-+|||.|+|.+.++|+-
T Consensus 48 g~ViFDe~kl~~e~lLe 64 (96)
T 2f40_A 48 AEVVIDDSKVNIEELKE 64 (96)
T ss_dssp CEEECCBCSCSHHHHHH
T ss_pred ceEEECcccCCHHHHHH
Confidence 47899999999998864
No 2
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=32.96 E-value=14 Score=19.32 Aligned_cols=12 Identities=8% Similarity=-0.006 Sum_probs=9.5
Q ss_pred CCCCccceeecC
Q psy6895 52 RQHSVKYFRIHF 63 (63)
Q Consensus 52 rQ~~~kqr~~~~ 63 (63)
-.|+-.||+||+
T Consensus 19 tdpgerqrcidm 30 (36)
T 2jyp_A 19 TDPGERQRCIDM 30 (36)
T ss_dssp TTTTCTTCGGGT
T ss_pred cCcchhhhhhhh
Confidence 457788999986
No 3
>1p15_A Protein-tyrosine phosphatase alpha; transmembrane, hydrolase, phosphorylation; 2.00A {Mus musculus} SCOP: c.45.1.2
Probab=11.49 E-value=93 Score=20.51 Aligned_cols=27 Identities=41% Similarity=0.511 Sum_probs=19.0
Q ss_pred CccceeeEEeeecCCCcHHHHhhcccCCCC
Q psy6895 23 RQHSSIVMLMFREEKSPEDEIKAWQFWHSR 52 (63)
Q Consensus 23 rqv~Sv~mvVf~e~K~~e~elk~wq~Whsr 52 (63)
..++.++|+.-.+|+.. .||-+||++.
T Consensus 75 ~~~~~IVmLt~~~E~~~---~kc~~YwP~~ 101 (253)
T 1p15_A 75 WKSCSIVMLTELEERGQ---EKCAQYWPSD 101 (253)
T ss_dssp TTCCEEEECSCSCSSSS---CCSCCCSCSS
T ss_pred CCCCEEEECCccccCCe---ehhhhhcCCC
Confidence 45678888876555543 4899999864
No 4
>1a7g_E E2 DBD, regulatory protein E2; transcription regulation, cervical cance; 2.40A {Human papillomavirus type 31} SCOP: d.58.8.1 PDB: 1dhm_A
Probab=10.42 E-value=51 Score=19.49 Aligned_cols=11 Identities=9% Similarity=0.353 Sum_probs=7.9
Q ss_pred CcHHHHhhccc
Q psy6895 38 SPEDEIKAWQF 48 (63)
Q Consensus 38 ~~e~elk~wq~ 48 (63)
.+-.+||||+|
T Consensus 10 G~~N~LKC~Ry 20 (82)
T 1a7g_E 10 GDANILKCLRY 20 (82)
T ss_dssp ECHHHHHHHHH
T ss_pred eCCccccchhh
Confidence 35677888877
No 5
>1r8h_A Regulatory protein E2; anti-parallel beta-barrel, DNA-binding domain, transcription, replication; 1.90A {Human papillomavirus type 6A} SCOP: d.58.8.1 PDB: 2ayb_A 2aye_A 2ayg_A
Probab=9.98 E-value=54 Score=19.62 Aligned_cols=11 Identities=9% Similarity=0.486 Sum_probs=7.7
Q ss_pred CcHHHHhhccc
Q psy6895 38 SPEDEIKAWQF 48 (63)
Q Consensus 38 ~~e~elk~wq~ 48 (63)
.+-.+||||+|
T Consensus 11 G~~N~LKC~Ry 21 (87)
T 1r8h_A 11 GESNCLKCFRY 21 (87)
T ss_dssp ECHHHHHHHHH
T ss_pred eCCccccChhh
Confidence 35667888876
No 6
>1f9f_A Regulatory protein E2; dimeric beta barrel, activator, DNA-binding, trans-acting factor, transcription; 1.90A {Human papillomavirus type 18} SCOP: d.58.8.1 PDB: 1jj4_A
Probab=9.65 E-value=53 Score=19.46 Aligned_cols=11 Identities=9% Similarity=0.453 Sum_probs=7.9
Q ss_pred CcHHHHhhccc
Q psy6895 38 SPEDEIKAWQF 48 (63)
Q Consensus 38 ~~e~elk~wq~ 48 (63)
.+-.+||||+|
T Consensus 12 G~~N~LKC~Ry 22 (83)
T 1f9f_A 12 GDRNSLKCLRY 22 (83)
T ss_dssp EEHHHHHHHHH
T ss_pred eCCccccchhh
Confidence 35677888876
No 7
>2bop_A Protein (E2); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.70A {Bovine papillomavirus type 1} SCOP: d.58.8.1 PDB: 1jjh_A
Probab=9.60 E-value=57 Score=19.40 Aligned_cols=10 Identities=20% Similarity=0.780 Sum_probs=6.1
Q ss_pred cHHHHhhccc
Q psy6895 39 PEDEIKAWQF 48 (63)
Q Consensus 39 ~e~elk~wq~ 48 (63)
+-.+||||+|
T Consensus 9 ~~N~LKC~Ry 18 (85)
T 2bop_A 9 TANQVKCYRF 18 (85)
T ss_dssp CHHHHHHHHH
T ss_pred CCccccChhh
Confidence 4556677665
No 8
>2q79_A Regulatory protein E2; beta barrel, DNA binding protein; 1.80A {Human papillomavirus type 16} SCOP: d.58.8.1 PDB: 1by9_A 1r8p_A 1zzf_A 3mi7_X
Probab=9.45 E-value=58 Score=19.83 Aligned_cols=10 Identities=10% Similarity=0.461 Sum_probs=7.2
Q ss_pred cHHHHhhccc
Q psy6895 39 PEDEIKAWQF 48 (63)
Q Consensus 39 ~e~elk~wq~ 48 (63)
+-.+||||+|
T Consensus 10 ~~N~LKC~Ry 19 (93)
T 2q79_A 10 DANTLKCLRY 19 (93)
T ss_dssp CHHHHHHHHH
T ss_pred CCccccchhh
Confidence 4567788876
No 9
>1dbd_A Regulatory protein E2; DNA-binding domain, gene regulation; NMR {Bovine papillomavirus type 1} SCOP: d.58.8.1
Probab=9.14 E-value=61 Score=19.92 Aligned_cols=11 Identities=18% Similarity=0.721 Sum_probs=7.7
Q ss_pred CcHHHHhhccc
Q psy6895 38 SPEDEIKAWQF 48 (63)
Q Consensus 38 ~~e~elk~wq~ 48 (63)
.+-.+||||+|
T Consensus 23 G~aN~LKC~Ry 33 (100)
T 1dbd_A 23 GTANQVKCYRF 33 (100)
T ss_dssp ECHHHHHHHHH
T ss_pred cCCCcccChhh
Confidence 34677888876
No 10
>3i36_A Vascular protein tyrosine phosphatase 1; PTP, hydrolase; 1.84A {Rattus norvegicus} PDB: 2nz6_A 2cfv_A
Probab=8.12 E-value=1.4e+02 Score=20.82 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=19.5
Q ss_pred CccceeeEEeeecCCCcHHHHhhcccCCCCC
Q psy6895 23 RQHSSIVMLMFREEKSPEDEIKAWQFWHSRQ 53 (63)
Q Consensus 23 rqv~Sv~mvVf~e~K~~e~elk~wq~WhsrQ 53 (63)
..++.++|+.--.|+.. .||-+||++.+
T Consensus 135 ~~~~~IVMLt~~~E~g~---~kC~~YWP~~~ 162 (342)
T 3i36_A 135 KNVYAIVMLTKCVEQGR---TKCEEYWPSKQ 162 (342)
T ss_dssp TTCCEEEECSCSBSSSS---BCSCCCSCCSS
T ss_pred cCCcEEEecCcccccCc---cccccccccCC
Confidence 45678888875554443 48999998764
Done!