Query psy6895
Match_columns 63
No_of_seqs 63 out of 65
Neff 3.9
Searched_HMMs 13730
Date Fri Aug 16 21:12:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6895.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6895hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f9fa_ d.58.8.1 (A:) Papillom 13.5 30 0.0022 19.2 0.9 10 39-48 11-20 (81)
2 d2q79a1 d.58.8.1 (A:284-362) P 11.3 21 0.0016 19.7 -0.2 11 38-48 8-18 (79)
3 d2bopa_ d.58.8.1 (A:) Papillom 11.2 22 0.0016 19.9 -0.2 10 39-48 9-18 (85)
4 d1a7ge_ d.58.8.1 (E:) Papillom 10.4 24 0.0018 19.6 -0.2 11 38-48 10-20 (82)
5 d1r8ha_ d.58.8.1 (A:) Papillom 10.2 25 0.0018 19.8 -0.2 11 38-48 11-21 (87)
6 d1pjza_ c.66.1.36 (A:) Thiopur 10.0 17 0.0012 19.9 -1.0 17 47-63 11-27 (201)
7 d1p15a_ c.45.1.2 (A:) Protein- 7.9 55 0.004 19.7 0.7 35 16-53 68-102 (245)
8 d1g4us2 c.45.1.2 (S:297-539) S 6.6 1.1E+02 0.0082 18.2 1.8 28 22-52 70-97 (243)
9 d1xxla_ c.66.1.41 (A:) Hypothe 5.6 80 0.0058 18.2 0.6 9 55-63 15-23 (234)
10 d1o6wa1 b.72.1.1 (A:1-29) Spli 4.4 64 0.0046 14.6 -0.4 11 1-11 1-11 (29)
No 1
>d1f9fa_ d.58.8.1 (A:) Papillomavirus-1 E2 protein {Human papillomavirus type 18 [TaxId: 333761]}
Probab=13.45 E-value=30 Score=19.20 Aligned_cols=10 Identities=10% Similarity=0.484 Sum_probs=7.0
Q ss_pred cHHHHhhccc
Q psy6895 39 PEDEIKAWQF 48 (63)
Q Consensus 39 ~e~elk~wq~ 48 (63)
+-.+||||+|
T Consensus 11 ~~N~LKC~Ry 20 (81)
T d1f9fa_ 11 DRNSLKCLRY 20 (81)
T ss_dssp EHHHHHHHHH
T ss_pred CCccccchhh
Confidence 4567777776
No 2
>d2q79a1 d.58.8.1 (A:284-362) Papillomavirus-1 E2 protein {Human papillomavirus type 16 [TaxId: 333760]}
Probab=11.25 E-value=21 Score=19.68 Aligned_cols=11 Identities=9% Similarity=0.432 Sum_probs=7.6
Q ss_pred CcHHHHhhccc
Q psy6895 38 SPEDEIKAWQF 48 (63)
Q Consensus 38 ~~e~elk~wq~ 48 (63)
.+-.+||||+|
T Consensus 8 G~~N~LKC~Ry 18 (79)
T d2q79a1 8 GDANTLKCLRY 18 (79)
T ss_dssp ECHHHHHHHHH
T ss_pred ECCCcccchhh
Confidence 34567788876
No 3
>d2bopa_ d.58.8.1 (A:) Papillomavirus-1 E2 protein {Bovine papillomavirus type 1 [TaxId: 10559]}
Probab=11.17 E-value=22 Score=19.95 Aligned_cols=10 Identities=20% Similarity=0.780 Sum_probs=6.5
Q ss_pred cHHHHhhccc
Q psy6895 39 PEDEIKAWQF 48 (63)
Q Consensus 39 ~e~elk~wq~ 48 (63)
+-.+||||+|
T Consensus 9 ~~N~LKC~Ry 18 (85)
T d2bopa_ 9 TANQVKCYRF 18 (85)
T ss_dssp CHHHHHHHHH
T ss_pred CCCcccChhh
Confidence 4566777765
No 4
>d1a7ge_ d.58.8.1 (E:) Papillomavirus-1 E2 protein {Human papillomavirus type 31 [TaxId: 10585]}
Probab=10.35 E-value=24 Score=19.62 Aligned_cols=11 Identities=9% Similarity=0.353 Sum_probs=8.1
Q ss_pred CcHHHHhhccc
Q psy6895 38 SPEDEIKAWQF 48 (63)
Q Consensus 38 ~~e~elk~wq~ 48 (63)
.+-.+||||+|
T Consensus 10 G~~N~LKC~Ry 20 (82)
T d1a7ge_ 10 GDANILKCLRY 20 (82)
T ss_dssp ECHHHHHHHHH
T ss_pred ECCCcccchhh
Confidence 35677888886
No 5
>d1r8ha_ d.58.8.1 (A:) Papillomavirus-1 E2 protein {Human papillomavirus type 6a [TaxId: 37122]}
Probab=10.19 E-value=25 Score=19.81 Aligned_cols=11 Identities=9% Similarity=0.486 Sum_probs=7.8
Q ss_pred CcHHHHhhccc
Q psy6895 38 SPEDEIKAWQF 48 (63)
Q Consensus 38 ~~e~elk~wq~ 48 (63)
.+-.+||||+|
T Consensus 11 G~~N~LKC~Ry 21 (87)
T d1r8ha_ 11 GESNCLKCFRY 21 (87)
T ss_dssp ECHHHHHHHHH
T ss_pred ECCCceeEhhh
Confidence 35677888876
No 6
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}
Probab=9.99 E-value=17 Score=19.90 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=12.3
Q ss_pred ccCCCCCCCccceeecC
Q psy6895 47 QFWHSRQHSVKYFRIHF 63 (63)
Q Consensus 47 q~WhsrQ~~~kqr~~~~ 63 (63)
+||+.=..++..|||||
T Consensus 11 ~~~~~l~~~~~~rvLd~ 27 (201)
T d1pjza_ 11 QYWSSLNVVPGARVLVP 27 (201)
T ss_dssp HHHHHHCCCTTCEEEET
T ss_pred HHHHHcCCCCCCEEEEe
Confidence 36766567777899986
No 7
>d1p15a_ c.45.1.2 (A:) Protein-tyrosine phosphatase alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.90 E-value=55 Score=19.68 Aligned_cols=35 Identities=37% Similarity=0.565 Sum_probs=22.6
Q ss_pred hhcccccCccceeeEEeeecCCCcHHHHhhcccCCCCC
Q psy6895 16 AWQFWHSRQHSSIVMLMFREEKSPEDEIKAWQFWHSRQ 53 (63)
Q Consensus 16 ~w~~Whsrqv~Sv~mvVf~e~K~~e~elk~wq~WhsrQ 53 (63)
+|+-=.-.+++.++|+.-.+|.+.+ +|.+||.+++
T Consensus 68 FW~Mv~~~~~~~IVmL~~~~e~~~~---~~~~y~p~~~ 102 (245)
T d1p15a_ 68 FWRMIWEWKSCSIVMLTELEERGQE---KCAQYWPSDG 102 (245)
T ss_dssp HHHHHHHTTCCEEEECSCSCSSSSC---CSCCCSCSSS
T ss_pred HhhheecCCCCEEEEEeccccCCCc---ccccccCCCC
Confidence 4443345567788887755555443 7999997653
No 8
>d1g4us2 c.45.1.2 (S:297-539) SptP tyrosine phosphatase, catalytic domain {Salmonella typhimurium [TaxId: 90371]}
Probab=6.63 E-value=1.1e+02 Score=18.22 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=17.0
Q ss_pred cCccceeeEEeeecCCCcHHHHhhcccCCCC
Q psy6895 22 SRQHSSIVMLMFREEKSPEDEIKAWQFWHSR 52 (63)
Q Consensus 22 srqv~Sv~mvVf~e~K~~e~elk~wq~Whsr 52 (63)
-.+.+.++|+.-.+| ...-+|.+||++.
T Consensus 70 e~~~~~IVmLt~~~E---~~~~kc~~Ywp~~ 97 (243)
T d1g4us2 70 EKECSCLVVLTSEDQ---MQAKQLPPYFRGS 97 (243)
T ss_dssp HHTCSEEEECCCHHH---HHHTTCCCTTSSE
T ss_pred hcCCCEEEEeccccc---CccccccccCCCC
Confidence 346678888862221 1234799999754
No 9
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}
Probab=5.64 E-value=80 Score=18.18 Aligned_cols=9 Identities=0% Similarity=-0.075 Sum_probs=6.4
Q ss_pred CccceeecC
Q psy6895 55 SVKYFRIHF 63 (63)
Q Consensus 55 ~~kqr~~~~ 63 (63)
.+.+|||||
T Consensus 15 ~~~~rILDi 23 (234)
T d1xxla_ 15 RAEHRVLDI 23 (234)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEe
Confidence 456788885
No 10
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.43 E-value=64 Score=14.62 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=0.0
Q ss_pred CccccCCCCch
Q psy6895 1 MLMFREEKSPE 11 (63)
Q Consensus 1 m~vf~e~k~~e 11 (63)
|++|.|.++++
T Consensus 1 ~s~W~e~~~~~ 11 (29)
T d1o6wa1 1 MSIWKEAKDAS 11 (29)
T ss_dssp CCCEEEEECTT
T ss_pred CCccEEEECCC
Done!