RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy6895
         (63 letters)



>gnl|CDD|218123 pfam04516, CP2, CP2 transcription factor.  This family represents a
           conserved region in the CP2 transcription factor family.
          Length = 237

 Score = 51.2 bits (123), Expect = 1e-09
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 27  SIVMLMFREEKSPEDEIKAWQFWHSRQHSVK 57
           S+V ++F EEK      K WQ W +RQ   K
Sbjct: 92  SVVRVVFEEEKQRSKPAKCWQLWKARQRGGK 122



 Score = 44.2 bits (105), Expect = 4e-07
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 1   MLMFREEKSPEDEIKAWQFWHSRQHSS 27
            ++F EEK      K WQ W +RQ   
Sbjct: 95  RVVFEEEKQRSKPAKCWQLWKARQRGG 121


>gnl|CDD|236596 PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta;
           Reviewed.
          Length = 133

 Score = 24.7 bits (54), Expect = 3.0
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 1   MLMFREEKSPEDEIKAW 17
           +LMF E+   E  +  W
Sbjct: 108 LLMFEEQIENETALTQW 124



 Score = 24.7 bits (54), Expect = 3.0
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 30  MLMFREEKSPEDEIKAW 46
           +LMF E+   E  +  W
Sbjct: 108 LLMFEEQIENETALTQW 124


>gnl|CDD|233029 TIGR00574, dnl1, DNA ligase I, ATP-dependent (dnl1).  All proteins
           in this family with known functions are ATP-dependent
           DNA ligases. Functions include DNA repair, DNA
           replication, and DNA recombination (or any process
           requiring ligation of two single-stranded DNA sections).
           This family is based on the phylogenomic analysis of JA
           Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
           metabolism, DNA replication, recombination, and repair].
          Length = 514

 Score = 25.0 bits (55), Expect = 3.2
 Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 7/44 (15%)

Query: 5   REEKSPEDEIKAWQFWHSRQHSSI-------VMLMFREEKSPED 41
             + +   E+   +   S  + +             R++K PED
Sbjct: 459 WPDPAIVWEVTGAEITKSPAYKANGISLRFPRFSRIRDDKGPED 502


>gnl|CDD|215461 PLN02856, PLN02856, fumarylacetoacetase.
          Length = 424

 Score = 24.7 bits (54), Expect = 3.6
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 8/43 (18%)

Query: 19  FWHSRQHSSIVMLMFREEKSPEDEIKAWQF-----WHSRQHSV 56
           F+ SR+H++ V  MFR    PE+ +          +H R  SV
Sbjct: 133 FFSSREHATNVGTMFR---GPENALNPNWLHLPIGYHGRASSV 172


>gnl|CDD|234146 TIGR03211, catechol_2_3, catechol 2,3 dioxygenase.  Members of this
           family all are enzymes active as catechol 2,3
           dioxygenase (1.13.11.2), although some members have
           highly significant activity on catechol derivatives such
           as 3-methylcatechol, 3-chlorocatechol, and
           4-chlorocatechol (see Mars, et al.). This enzyme is also
           called metapyrocatechase, as it performs a meta-cleavage
           (an extradiol ring cleavage), in contrast to the
           ortho-cleavage (intradiol ring cleavage)performed by
           catechol 1,2-dioxygenase (EC 1.13.11.1), also called
           pyrocatechase [Energy metabolism, Other].
          Length = 303

 Score = 23.4 bits (51), Expect = 8.8
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 11  EDEIKAWQFWHSRQ 24
           EDE+    F+H R 
Sbjct: 280 EDELGRGIFYHGRV 293



 Score = 23.4 bits (51), Expect = 8.8
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 40  EDEIKAWQFWHSRQ 53
           EDE+    F+H R 
Sbjct: 280 EDELGRGIFYHGRV 293


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.132    0.448 

Gapped
Lambda     K      H
   0.267   0.0748    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,339,246
Number of extensions: 228934
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 13
Length of query: 63
Length of database: 10,937,602
Length adjustment: 34
Effective length of query: 29
Effective length of database: 9,429,566
Effective search space: 273457414
Effective search space used: 273457414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)