RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6895
         (63 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 27.6 bits (60), Expect = 0.21
 Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 12/39 (30%)

Query: 7  EKSPEDEIKAWQFWHSRQHSSIVMLMFREEKSPEDEIKA 45
          EK     +K  Q       +S  + ++ ++ +P   IKA
Sbjct: 18 EKQ---ALKKLQ-------AS--LKLYADDSAPALAIKA 44


>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
           cerevisiae}
          Length = 231

 Score = 26.2 bits (57), Expect = 0.67
 Identities = 6/42 (14%), Positives = 15/42 (35%)

Query: 2   LMFREEKSPEDEIKAWQFWHSRQHSSIVMLMFREEKSPEDEI 43
            M       ++  K   FW +      V   F++ +  + ++
Sbjct: 190 DMDNNNDGVDELNKKCTFWDAISKLYYVQFFFKQAEQEQADV 231


>2qtq_A Transcriptional regulator, TETR family; transcription regulator,
           DNA/RNA-binding 3-helical bundle FO turn helix motif,
           HTH motif; HET: MSE; 1.85A {Novosphingobium
           aromaticivorans} PDB: 2rha_A*
          Length = 213

 Score = 23.4 bits (51), Expect = 6.2
 Identities = 6/45 (13%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 2   LMFREEKSPEDEIKA---WQFWHSRQHSSIVMLMFREEKSPEDEI 43
           L+ +++ SPE +++            +  +  L+ R  +  ++  
Sbjct: 82  LLAKDDMSPEAKLRRHISKCIDTYYDYPYLNRLLMRLVRDSDEAE 126


>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle,
           oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus}
           SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
          Length = 661

 Score = 23.3 bits (50), Expect = 8.1
 Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 2/54 (3%)

Query: 9   SPEDEIKAWQFWHSRQHSSIVMLMFREEKSPEDEIKAWQFWHSRQHSVKYFRIH 62
           S E   +A++   +R        +       + +  AW    +    V+    H
Sbjct: 479 SLEGLTEAYKLRAARLVEIAAKNLQTHVSHRKSKEVAWN--LTSVDLVRASEAH 530


>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix,
           dimer, structural genomics, PSI, protein structure
           initiative; 2.50A {Escherichia coli} SCOP: a.4.1.9
           a.121.1.1 PDB: 3loc_A*
          Length = 212

 Score = 22.7 bits (49), Expect = 9.6
 Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 4   FREEKSPEDEIKA---WQFWHSRQHSSIVMLMFREEKSPEDEIKAWQFWHSRQH 54
           FRE+ +P   IK     +   SR +     L   E  +    +        +  
Sbjct: 84  FREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKAL 137


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.132    0.448 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,042,933
Number of extensions: 44189
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 7
Length of query: 63
Length of database: 6,701,793
Length adjustment: 34
Effective length of query: 29
Effective length of database: 5,752,479
Effective search space: 166821891
Effective search space used: 166821891
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.9 bits)