BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6898
(111 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|332020940|gb|EGI61334.1| Olfactomedin-like protein 2A [Acromyrmex echinatior]
Length = 1273
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/67 (55%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT---NGTKTDHYAMGAD 85
G G DGRDG+PGEPGLDGIPGR+G+DG+PG +G PG +G+PG+ NGT MG
Sbjct: 608 GPPGFDGRDGVPGEPGLDGIPGRSGLDGVPGSNGKPGANGLPGSPGRNGTDGRPGQMGPQ 667
Query: 86 TKSFSDG 92
S G
Sbjct: 668 GPPGSRG 674
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
GL G G PG G DG+PG G+DGIPG+ GL DG+PG+NG + G+ ++ +D
Sbjct: 602 GLKGDIGPPGFDGRDGVPGEPGLDGIPGRSGL---DGVPGSNGKPGANGLPGSPGRNGTD 658
Query: 92 G 92
G
Sbjct: 659 G 659
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I GR GLDG G G+PG +G+PG G +G G+ G G G PG+ G
Sbjct: 627 IPGRSGLDGVPGSNGKPGANGLPGSPGRNGTDGRPGQMGPQGPPGSRG 674
>gi|91085657|ref|XP_971289.1| PREDICTED: similar to colmedin [Tribolium castaneum]
Length = 879
Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 35/47 (74%), Positives = 38/47 (80%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR GLDGRDG+PGEPGLDG+PGRNG DGIPG +G PG G G NGT
Sbjct: 221 GRPGLDGRDGIPGEPGLDGMPGRNGYDGIPGVNGRPGLPGRDGRNGT 267
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/54 (53%), Positives = 36/54 (66%), Gaps = 6/54 (11%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGK---DGIPGTNG 74
+ G++G G GLPGE G G PG +G DGIPG+ DG+PG+ DGIPG NG
Sbjct: 201 VPGQMGHRGLPGLPGEKGSQGRPGLDGRDGIPGEPGLDGMPGRNGYDGIPGVNG 254
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 12/63 (19%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPG 71
DR D G G G G GLPG PG G GR G+DG +DG+PG+ DG+PG
Sbjct: 192 DRGDKG------FPGVPGQMGHRGLPGLPGEKGSQGRPGLDG---RDGIPGEPGLDGMPG 242
Query: 72 TNG 74
NG
Sbjct: 243 RNG 245
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G G+PG+ G G+PG G G G+ GL G+DGIPG G
Sbjct: 191 GDRGDKGFPGVPGQMGHRGLPGLPGEKGSQGRPGLDGRDGIPGEPG 236
>gi|158294873|ref|XP_315876.4| AGAP005849-PA [Anopheles gambiae str. PEST]
gi|157015767|gb|EAA11951.4| AGAP005849-PA [Anopheles gambiae str. PEST]
Length = 828
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/46 (76%), Positives = 38/46 (82%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G GLDGRDG+PGEPGLDG+PGR G DGIPGKD GKDGIPG +G
Sbjct: 155 GNPGLDGRDGVPGEPGLDGVPGRAGADGIPGKD---GKDGIPGIDG 197
Score = 41.6 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 21/73 (28%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGM------------------DGIPGKD 61
GRA + I G+ DG+DG+PG G +GI G++G+ G GK
Sbjct: 176 GRAGADGIPGK---DGKDGIPGIDGRNGIDGKDGLAGPIGPAGPPGLPGPRGIHGPKGKQ 232
Query: 62 GLPGKDGIPGTNG 74
G PG +G PGT G
Sbjct: 233 GRPGTNGTPGTPG 245
>gi|328793176|ref|XP_001121395.2| PREDICTED: hypothetical protein LOC725563 [Apis mellifera]
Length = 818
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 31/46 (67%), Positives = 37/46 (80%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G DGRDG+PGEPGLDGIPGR+G+DG+PG +G PG +G PG G
Sbjct: 188 GPSGFDGRDGIPGEPGLDGIPGRSGLDGLPGINGKPGLNGSPGRPG 233
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 35/83 (42%), Gaps = 36/83 (43%)
Query: 29 GRIGLDGRDGLPGEPGL---------------------------------DGIPGRNGMD 55
G G G G PGEPG+ DGIPG G+D
Sbjct: 146 GLPGAPGSPGAPGEPGISGLQGPKGSSGLTGPPGPRGPKGDIGPSGFDGRDGIPGEPGLD 205
Query: 56 GIPGK---DGLPGKDGIPGTNGT 75
GIPG+ DGLPG +G PG NG+
Sbjct: 206 GIPGRSGLDGLPGINGKPGLNGS 228
Score = 43.1 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK 60
I GR GLDG G+ G+PGL+G PGR G +G G+
Sbjct: 207 IPGRSGLDGLPGINGKPGLNGSPGRPGRNGTDGR 240
>gi|383858047|ref|XP_003704514.1| PREDICTED: uncharacterized protein LOC100878969 [Megachile
rotundata]
Length = 829
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/46 (67%), Positives = 37/46 (80%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G DGRDG+PGEPGLDGIPGR+G+DG+PG +G PG +G PG G
Sbjct: 192 GPSGFDGRDGVPGEPGLDGIPGRSGLDGLPGINGKPGLNGSPGRPG 237
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 35/86 (40%), Gaps = 39/86 (45%)
Query: 29 GRIGLDGRDGLPGEPGL------------------------------------DGIPGRN 52
G G G G PGEPGL DG+PG
Sbjct: 147 GLPGAPGSPGAPGEPGLPGLQGMTGPKGPPGLTGPPGPRGPKGDIGPSGFDGRDGVPGEP 206
Query: 53 GMDGIPGK---DGLPGKDGIPGTNGT 75
G+DGIPG+ DGLPG +G PG NG+
Sbjct: 207 GLDGIPGRSGLDGLPGINGKPGLNGS 232
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK 60
I GR GLDG G+ G+PGL+G PGR G +G G+
Sbjct: 211 IPGRSGLDGLPGINGKPGLNGSPGRPGRNGTDGR 244
>gi|157109031|ref|XP_001650493.1| colmedin [Aedes aegypti]
gi|108879145|gb|EAT43370.1| AAEL005189-PA, partial [Aedes aegypti]
Length = 793
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G GLDGRDG+PGEPGLDG+PGR G DGIPG+D GKDG PG NG
Sbjct: 117 GNPGLDGRDGVPGEPGLDGVPGRAGADGIPGRD---GKDGTPGING 159
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 31/70 (44%), Gaps = 21/70 (30%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---------------------GLPG 65
+ G G G DG+PG G DG PG NG +GI GK+ G G
Sbjct: 133 LDGVPGRAGADGIPGRDGKDGTPGINGQNGIDGKNGTPGPMGPVGPPGEPGPRGLHGPRG 192
Query: 66 KDGIPGTNGT 75
K G PG NGT
Sbjct: 193 KPGRPGINGT 202
Score = 35.0 bits (79), Expect = 5.9, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 34/70 (48%), Gaps = 15/70 (21%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDG---------------IPGRNGMDGIPGKDGLP 64
GRA + I GR G DG G+ G+ G+DG PG G+ G GK G P
Sbjct: 138 GRAGADGIPGRDGKDGTPGINGQNGIDGKNGTPGPMGPVGPPGEPGPRGLHGPRGKPGRP 197
Query: 65 GKDGIPGTNG 74
G +G PGT G
Sbjct: 198 GINGTPGTPG 207
>gi|357619457|gb|EHJ72021.1| colmedin [Danaus plexippus]
Length = 722
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 41/51 (80%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNG 74
G GLDGRDG+PGEPGLDG+PGRNG DG PG+ DG+PG+DGIPG NG
Sbjct: 102 FPGNPGLDGRDGVPGEPGLDGLPGRNGADGAPGRYGQDGIPGRDGIPGKNG 152
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G GL DGLPG G DG PGR G DGIPG+DG+PGK+G G +G
Sbjct: 114 VPGEPGL---DGLPGRNGADGAPGRYGQDGIPGRDGIPGKNGKDGKDG 158
>gi|357612436|gb|EHJ68002.1| colmedin [Danaus plexippus]
Length = 624
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 41/51 (80%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNG 74
G GLDGRDG+PGEPGLDG+PGRNG DG PG+ DG+PG+DGIPG NG
Sbjct: 215 FPGNPGLDGRDGVPGEPGLDGLPGRNGADGAPGRYGQDGIPGRDGIPGKNG 265
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G GL DGLPG G DG PGR G DGIPG+DG+PGK+G G +G
Sbjct: 227 VPGEPGL---DGLPGRNGADGAPGRYGQDGIPGRDGIPGKNGKDGKDG 271
>gi|328713370|ref|XP_001950725.2| PREDICTED: hypothetical protein LOC100159502 [Acyrthosiphon pisum]
Length = 838
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/52 (63%), Positives = 39/52 (75%), Gaps = 2/52 (3%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG--IPGTNG 74
T G GLDGRDG+PGEPGLDG+PG+ G+DG PG +GLPGKD GT+G
Sbjct: 177 TGFPGAPGLDGRDGIPGEPGLDGMPGKYGLDGFPGTNGLPGKDATCFNGTDG 228
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPGTNG 74
GR T + G +G G G+ G PG G+ GR+G+ G PG DG+PGK DG PGTNG
Sbjct: 157 GRKGPTGLPGPVGPKGERGMTGFPGAPGLDGRDGIPGEPGLDGMPGKYGLDGFPGTNG 214
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G++GR G G PG G G GM G PG GL G+DGIPG G
Sbjct: 151 GPMGIEGRKGPTGLPGPVGPKGERGMTGFPGAPGLDGRDGIPGEPG 196
>gi|242016912|ref|XP_002428939.1| collagen alpha chain, type IV, putative [Pediculus humanus
corporis]
gi|212513762|gb|EEB16201.1| collagen alpha chain, type IV, putative [Pediculus humanus
corporis]
Length = 132
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 46/58 (79%), Gaps = 2/58 (3%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT--KTDH 79
+T G GLDGRDG+PGEPGLDGIPGR+G+DG+PG DGLPG G PG NGT +++H
Sbjct: 73 TTGWPGAPGLDGRDGVPGEPGLDGIPGRSGLDGLPGMDGLPGMHGAPGFNGTDGESNH 130
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPGTNGTKTDHYAMG 83
+G G G G PG PGLDG R+G+ G PG DG+PG+ DG+PG +G H A G
Sbjct: 65 AGPRGPKGTTGWPGAPGLDG---RDGVPGEPGLDGIPGRSGLDGLPGMDGLPGMHGAPG 120
>gi|195396767|ref|XP_002057000.1| GJ16585 [Drosophila virilis]
gi|194146767|gb|EDW62486.1| GJ16585 [Drosophila virilis]
Length = 1000
Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 33/46 (71%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR GLDGRDG+PGEPGLDG+PGR G D GK+GLPG+DG G NG
Sbjct: 371 GRAGLDGRDGVPGEPGLDGVPGRAGAD---GKNGLPGRDGKDGLNG 413
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 17/66 (25%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI-----------PGKDGLP------GKDGI 69
+ GR G DG++GLPG G DG+ G++G DG+ PG+ GL G+ G
Sbjct: 390 VPGRAGADGKNGLPGRDGKDGLNGKDGKDGMSITGPKGAQGPPGERGLKGIAGPRGRPGK 449
Query: 70 PGTNGT 75
PGTNGT
Sbjct: 450 PGTNGT 455
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 28 SGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
+G G G G G GL DG+PG G+DG+PG+ G GK+G+PG +G + G
Sbjct: 358 TGPRGPKGDPGAVGRAGLDGRDGVPGEPGLDGVPGRAGADGKNGLPGRDGKDGLNGKDGK 417
Query: 85 DTKSFS 90
D S +
Sbjct: 418 DGMSIT 423
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 17/83 (20%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGI--------------PGRNGMDGIPGKDGLPGK---DGI 69
I G G G GLPG PG+DG+ PG G G+ G+DG+PG+ DG+
Sbjct: 331 IPGPKGNRGDVGLPGAPGVDGVGQQGATGPRGPKGDPGAVGRAGLDGRDGVPGEPGLDGV 390
Query: 70 PGTNGTKTDHYAMGADTKSFSDG 92
PG G + G D K +G
Sbjct: 391 PGRAGADGKNGLPGRDGKDGLNG 413
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G G G PGE GL GI G G G PG +G P G+PG N K +
Sbjct: 424 GPKGAQGPPGERGLKGIAGPRGRPGKPGTNGTP---GVPGINTWKMQY 468
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI-----PGTNGTKTDHYAMGADTKSF 89
G G G PGL GIPG G G G G PG DG+ G G K D A+G
Sbjct: 318 GPKGPTGNPGLPGIPGPKGNRGDVGLPGAPGVDGVGQQGATGPRGPKGDPGAVGRAGLDG 377
Query: 90 SDGV 93
DGV
Sbjct: 378 RDGV 381
>gi|195132033|ref|XP_002010448.1| GI14677 [Drosophila mojavensis]
gi|193908898|gb|EDW07765.1| GI14677 [Drosophila mojavensis]
Length = 977
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/46 (71%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR GLDGRDG+PGEPGLDG+PGR G D GK+GLPG+DG G NG
Sbjct: 348 GRAGLDGRDGVPGEPGLDGVPGRAGAD---GKNGLPGRDGKDGLNG 390
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 17/66 (25%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI-----------PGKDGLP------GKDGI 69
+ GR G DG++GLPG G DG+ G++G DG+ PG+ GL G+ G
Sbjct: 367 VPGRAGADGKNGLPGRDGKDGLNGKDGKDGMSITGPKGAQGPPGERGLKGIAGPRGRPGK 426
Query: 70 PGTNGT 75
PGTNGT
Sbjct: 427 PGTNGT 432
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 17/83 (20%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGI--------------PGRNGMDGIPGKDGLPGK---DGI 69
I G G G GLPG PG+DG+ PG G G+ G+DG+PG+ DG+
Sbjct: 308 IPGPKGNRGDVGLPGAPGVDGVGQQGAPGPRGPKGDPGAVGRAGLDGRDGVPGEPGLDGV 367
Query: 70 PGTNGTKTDHYAMGADTKSFSDG 92
PG G + G D K +G
Sbjct: 368 PGRAGADGKNGLPGRDGKDGLNG 390
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI-----PGTNGTKTDHYAMGADTKSF 89
G G G PGL GIPG G G G G PG DG+ PG G K D A+G
Sbjct: 295 GPKGPTGNPGLPGIPGPKGNRGDVGLPGAPGVDGVGQQGAPGPRGPKGDPGAVGRAGLDG 354
Query: 90 SDGV 93
DGV
Sbjct: 355 RDGV 358
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G G G PGE GL GI G G G PG +G P G+PG N K +
Sbjct: 401 GPKGAQGPPGERGLKGIAGPRGRPGKPGTNGTP---GVPGINTWKMQY 445
>gi|195345339|ref|XP_002039227.1| GM22869 [Drosophila sechellia]
gi|194134453|gb|EDW55969.1| GM22869 [Drosophila sechellia]
Length = 948
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/48 (66%), Positives = 39/48 (81%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++GR GLDGRDG+PGEPGLDG+PGR G D GK+GLPG+DG G +G
Sbjct: 318 VTGRAGLDGRDGVPGEPGLDGVPGRAGAD---GKNGLPGRDGKDGLHG 362
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 24/105 (22%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGI-----------PGRNGMDGIPGKDGLPGK-- 66
GRA + +G G DG+DGL G+ G DG+ PG G+ GI G G PGK
Sbjct: 341 GRAGADGKNGLPGRDGKDGLHGKDGKDGLSITGPKGAQGPPGERGLKGIAGPRGRPGKPG 400
Query: 67 ----DGIPGTNGTKTDHYAMGADTK------SFSDGVLPSVQRAI 101
G+PG N K Y G+ + S +D +P QR +
Sbjct: 401 TNGIPGVPGINAWKL-QYPNGSSSNDLLIPPSITDIQVPDFQRTV 444
>gi|195567463|ref|XP_002107280.1| GD17379 [Drosophila simulans]
gi|194204685|gb|EDX18261.1| GD17379 [Drosophila simulans]
Length = 948
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/48 (66%), Positives = 39/48 (81%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++GR GLDGRDG+PGEPGLDG+PGR G D GK+GLPG+DG G +G
Sbjct: 318 VTGRAGLDGRDGVPGEPGLDGVPGRAGAD---GKNGLPGRDGKDGLHG 362
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 24/105 (22%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGI-----------PGRNGMDGIPGKDGLPGK-- 66
GRA + +G G DG+DGL G+ G DG+ PG G+ GI G G PGK
Sbjct: 341 GRAGADGKNGLPGRDGKDGLHGKDGKDGLSITGPKGAQGPPGERGLKGIAGPRGRPGKPG 400
Query: 67 ----DGIPGTNGTKTDHYAMGADTK------SFSDGVLPSVQRAI 101
G+PG N K Y G+ + S +D +P QR +
Sbjct: 401 TNGIPGVPGINAWKL-QYPNGSSSNDLLIPPSITDIQVPDFQRTV 444
>gi|194892219|ref|XP_001977620.1| GG19143 [Drosophila erecta]
gi|190649269|gb|EDV46547.1| GG19143 [Drosophila erecta]
Length = 940
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/48 (66%), Positives = 39/48 (81%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++GR GLDGRDG+PGEPGLDG+PGR G D GK+GLPG+DG G +G
Sbjct: 310 VTGRAGLDGRDGVPGEPGLDGVPGRAGAD---GKNGLPGRDGKDGLHG 354
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 37/105 (35%), Positives = 48/105 (45%), Gaps = 24/105 (22%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGI-----------PGRNGMDGIPGKDGLPGK-- 66
GRA + +G G DG+DGL G+ G DG+ PG G+ GI G G PGK
Sbjct: 333 GRAGADGKNGLPGRDGKDGLHGKDGKDGLSITGPKGAQGPPGERGLKGIAGPRGRPGKPG 392
Query: 67 ----DGIPGTNGTKTDHYAMGADTK------SFSDGVLPSVQRAI 101
G+PG N K Y G+ + S +D LP QR +
Sbjct: 393 TNGIPGVPGINAWKL-QYPNGSSSNDLLIPPSITDIQLPDFQRTV 436
>gi|350422948|ref|XP_003493338.1| PREDICTED: hypothetical protein LOC100746790 isoform 1 [Bombus
impatiens]
gi|350422951|ref|XP_003493339.1| PREDICTED: hypothetical protein LOC100746790 isoform 2 [Bombus
impatiens]
Length = 843
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/46 (65%), Positives = 35/46 (76%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G DGRDG+PGEPGLDGIPGR+G DG+ G +G PG +G PG G
Sbjct: 193 GPAGFDGRDGIPGEPGLDGIPGRSGTDGLSGMNGKPGLNGSPGRPG 238
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I GR G DG G+ G+PGL+G PGR G +G G+ G G G G G
Sbjct: 212 IPGRSGTDGLSGMNGKPGLNGSPGRPGRNGTDGRPGQMGPQGPIGPRG 259
Score = 41.2 bits (95), Expect = 0.080, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 27/71 (38%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMD------------------------GIPGKDGLPGK- 66
GL G G PG PG G+PG GM G G+DG+PG+
Sbjct: 148 GLPGAPGSPGAPGEPGLPGLRGMTGPKGPPGLTGPPGPRGPKGDIGPAGFDGRDGIPGEP 207
Query: 67 --DGIPGTNGT 75
DGIPG +GT
Sbjct: 208 GLDGIPGRSGT 218
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 30/86 (34%), Gaps = 45/86 (52%)
Query: 35 GRDGLPGEPGL------------------------------------------DGIPGRN 52
G G PG PG DGIPG
Sbjct: 148 GLPGAPGSPGAPGEPGLPGLRGMTGPKGPPGLTGPPGPRGPKGDIGPAGFDGRDGIPGEP 207
Query: 53 GMDGIPGK---DGLPGKDGIPGTNGT 75
G+DGIPG+ DGL G +G PG NG+
Sbjct: 208 GLDGIPGRSGTDGLSGMNGKPGLNGS 233
Score = 35.0 bits (79), Expect = 5.8, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
GR+ + +SG G G +G PG PGRNG DG PG+ G G G G
Sbjct: 214 GRSGTDGLSGMNGKPGLNGSPGR------PGRNGTDGRPGQMGPQGPIGPRG 259
>gi|340727501|ref|XP_003402081.1| PREDICTED: hypothetical protein LOC100648727 isoform 2 [Bombus
terrestris]
Length = 870
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/46 (65%), Positives = 35/46 (76%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G DGRDG+PGEPGLDGIPGR+G DG+ G +G PG +G PG G
Sbjct: 219 GPAGFDGRDGIPGEPGLDGIPGRSGTDGLSGMNGKPGLNGSPGRPG 264
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I GR G DG G+ G+PGL+G PGR G +G G+ G G G G G
Sbjct: 238 IPGRSGTDGLSGMNGKPGLNGSPGRPGRNGTDGRPGQMGPQGPIGPRG 285
Score = 41.2 bits (95), Expect = 0.081, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 27/71 (38%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMD------------------------GIPGKDGLPGK- 66
GL G G PG PG G+PG GM G G+DG+PG+
Sbjct: 174 GLPGAPGSPGAPGEPGLPGLRGMTGPKGPPGLTGPPGPRGPKGDIGPAGFDGRDGIPGEP 233
Query: 67 --DGIPGTNGT 75
DGIPG +GT
Sbjct: 234 GLDGIPGRSGT 244
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 30/86 (34%), Gaps = 45/86 (52%)
Query: 35 GRDGLPGEPGL------------------------------------------DGIPGRN 52
G G PG PG DGIPG
Sbjct: 174 GLPGAPGSPGAPGEPGLPGLRGMTGPKGPPGLTGPPGPRGPKGDIGPAGFDGRDGIPGEP 233
Query: 53 GMDGIPGK---DGLPGKDGIPGTNGT 75
G+DGIPG+ DGL G +G PG NG+
Sbjct: 234 GLDGIPGRSGTDGLSGMNGKPGLNGS 259
Score = 35.0 bits (79), Expect = 5.7, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
GR+ + +SG G G +G PG PGRNG DG PG+ G G G G
Sbjct: 240 GRSGTDGLSGMNGKPGLNGSPGR------PGRNGTDGRPGQMGPQGPIGPRG 285
>gi|340727499|ref|XP_003402080.1| PREDICTED: hypothetical protein LOC100648727 isoform 1 [Bombus
terrestris]
Length = 844
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/46 (65%), Positives = 35/46 (76%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G DGRDG+PGEPGLDGIPGR+G DG+ G +G PG +G PG G
Sbjct: 193 GPAGFDGRDGIPGEPGLDGIPGRSGTDGLSGMNGKPGLNGSPGRPG 238
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I GR G DG G+ G+PGL+G PGR G +G G+ G G G G G
Sbjct: 212 IPGRSGTDGLSGMNGKPGLNGSPGRPGRNGTDGRPGQMGPQGPIGPRG 259
Score = 41.2 bits (95), Expect = 0.081, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 27/71 (38%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMD------------------------GIPGKDGLPGK- 66
GL G G PG PG G+PG GM G G+DG+PG+
Sbjct: 148 GLPGAPGSPGAPGEPGLPGLRGMTGPKGPPGLTGPPGPRGPKGDIGPAGFDGRDGIPGEP 207
Query: 67 --DGIPGTNGT 75
DGIPG +GT
Sbjct: 208 GLDGIPGRSGT 218
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 30/86 (34%), Gaps = 45/86 (52%)
Query: 35 GRDGLPGEPGL------------------------------------------DGIPGRN 52
G G PG PG DGIPG
Sbjct: 148 GLPGAPGSPGAPGEPGLPGLRGMTGPKGPPGLTGPPGPRGPKGDIGPAGFDGRDGIPGEP 207
Query: 53 GMDGIPGK---DGLPGKDGIPGTNGT 75
G+DGIPG+ DGL G +G PG NG+
Sbjct: 208 GLDGIPGRSGTDGLSGMNGKPGLNGS 233
Score = 35.0 bits (79), Expect = 5.7, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
GR+ + +SG G G +G PG PGRNG DG PG+ G G G G
Sbjct: 214 GRSGTDGLSGMNGKPGLNGSPGR------PGRNGTDGRPGQMGPQGPIGPRG 259
>gi|45549584|ref|NP_573262.2| CG6867 [Drosophila melanogaster]
gi|45447042|gb|AAF48788.2| CG6867 [Drosophila melanogaster]
Length = 949
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/47 (68%), Positives = 38/47 (80%), Gaps = 3/47 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+GR GLDGRDG+PGEPGLDG+PGR G D GK+GLPG+DG G +G
Sbjct: 320 TGRAGLDGRDGVPGEPGLDGVPGRAGAD---GKNGLPGRDGKDGLHG 363
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 24/105 (22%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGI-----------PGRNGMDGIPGKDGLPGK-- 66
GRA + +G G DG+DGL G+ G DG+ PG G+ GI G G PGK
Sbjct: 342 GRAGADGKNGLPGRDGKDGLHGKDGKDGLSITGPKGAQGPPGERGLKGIAGPRGRPGKPG 401
Query: 67 ----DGIPGTNGTKTDHYAMGADTK------SFSDGVLPSVQRAI 101
G+PG N K Y G+ + S +D +P QR +
Sbjct: 402 TNGIPGVPGINAWKL-QYPNGSSSNDLLIPPSITDIQVPDFQRTV 445
>gi|25012707|gb|AAN71447.1| RE59052p [Drosophila melanogaster]
Length = 949
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/47 (68%), Positives = 38/47 (80%), Gaps = 3/47 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+GR GLDGRDG+PGEPGLDG+PGR G D GK+GLPG+DG G +G
Sbjct: 320 TGRAGLDGRDGVPGEPGLDGVPGRAGAD---GKNGLPGRDGKDGLHG 363
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 24/105 (22%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGI-----------PGRNGMDGIPGKDGLPGK-- 66
GRA + +G G DG+DGL G+ G DG+ PG G+ GI G G PGK
Sbjct: 342 GRAGADGKNGLPGRDGKDGLHGKDGKDGLSITGPKGAQGPPGERGLKGIAGPRGRPGKPG 401
Query: 67 ----DGIPGTNGTKTDHYAMGADTK------SFSDGVLPSVQRAI 101
G+PG N K Y G+ + S +D +P QR +
Sbjct: 402 TNGIPGVPGINAWKL-QYPNGSSSNDLLIPPSITDIQVPDFQRTV 445
>gi|224586954|gb|ACN58576.1| RT01583p [Drosophila melanogaster]
Length = 865
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/47 (68%), Positives = 38/47 (80%), Gaps = 3/47 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+GR GLDGRDG+PGEPGLDG+PGR G D GK+GLPG+DG G +G
Sbjct: 236 TGRAGLDGRDGVPGEPGLDGVPGRAGAD---GKNGLPGRDGKDGLHG 279
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 24/105 (22%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGI-----------PGRNGMDGIPGKDGLPGK-- 66
GRA + +G G DG+DGL G+ G DG+ PG G+ GI G G PGK
Sbjct: 258 GRAGADGKNGLPGRDGKDGLHGKDGKDGLSITGPKGAQGPPGERGLKGIAGPRGRPGKPG 317
Query: 67 ----DGIPGTNGTKTDHYAMGADTK------SFSDGVLPSVQRAI 101
G+PG N K Y G+ + S +D +P QR +
Sbjct: 318 TNGIPGVPGINAWKL-QYPNGSSSNDLLIPPSITDIQVPDFQRTV 361
>gi|195481213|ref|XP_002101561.1| GE17702 [Drosophila yakuba]
gi|194189085|gb|EDX02669.1| GE17702 [Drosophila yakuba]
Length = 948
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/48 (64%), Positives = 37/48 (77%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++GR GLDGRDG+PGEPGLDG+PGR G DG G G GKDG+ G +G
Sbjct: 318 VTGRAGLDGRDGVPGEPGLDGVPGRAGADGKNGLAGRDGKDGLHGKDG 365
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 24/105 (22%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGI-----------PGRNGMDGIPGKDGLPGK-- 66
GRA + +G G DG+DGL G+ G DG+ PG G+ GI G G PGK
Sbjct: 341 GRAGADGKNGLAGRDGKDGLHGKDGKDGLSITGPKGAQGPPGERGLKGIAGPRGRPGKPG 400
Query: 67 ----DGIPGTNGTKTDHYAMGADTK------SFSDGVLPSVQRAI 101
G+PG N K Y G+ + S +D +P QR +
Sbjct: 401 TNGIPGVPGINAWKL-QYPNGSSSNDLLIPPSITDLQMPDFQRTV 444
>gi|307206578|gb|EFN84578.1| Gliomedin [Harpegnathos saltator]
Length = 814
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 39/47 (82%), Gaps = 3/47 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGT 75
G DGRDG+PGEPGLDGIPGR+G+DG+PG +G PG + G+PG NGT
Sbjct: 198 GFDGRDGIPGEPGLDGIPGRSGLDGVPGSNGKPGVNGSPGLPGRNGT 244
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 21/71 (29%)
Query: 27 ISGRIGLDGRDGLPGEPGLD---GIPGRNGMDGIPGKDGL------------------PG 65
I GR GLDG G G+PG++ G+PGRNG DG PG+ GL PG
Sbjct: 214 IPGRSGLDGVPGSNGKPGVNGSPGLPGRNGTDGRPGQMGLQGPPGQRGDQGPQGRTGPPG 273
Query: 66 KDGIPGTNGTK 76
+DG PG K
Sbjct: 274 RDGEPGVQAWK 284
>gi|307174644|gb|EFN65043.1| Olfactomedin-like protein 2A [Camponotus floridanus]
Length = 836
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 36/43 (83%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G DGRDG+PGEPGLDGIPGR+GMDG PG +G PG +G PG+ G
Sbjct: 198 GFDGRDGVPGEPGLDGIPGRSGMDGTPGTNGKPGMNGSPGSPG 240
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 21/73 (28%)
Query: 27 ISGRIGLDGRDGLPGEPGLD---GIPGRNGMDGIP------------------GKDGLPG 65
I GR G+DG G G+PG++ G PGRNG DG P G+ G+PG
Sbjct: 214 IPGRSGMDGTPGTNGKPGMNGSPGSPGRNGTDGRPGQMGPQGPPGPRGDVGPVGRPGIPG 273
Query: 66 KDGIPGTNGTKTD 78
KDG PG K +
Sbjct: 274 KDGTPGIQAYKVN 286
>gi|170030914|ref|XP_001843332.1| colmedin [Culex quinquefasciatus]
gi|167868812|gb|EDS32195.1| colmedin [Culex quinquefasciatus]
Length = 794
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G GLDGRDG+PGEPGLDGIPGR G DGIPG+D GKDG PG NG
Sbjct: 120 GNPGLDGRDGVPGEPGLDGIPGRAGADGIPGRD---GKDGTPGING 162
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 27 ISGRIGLDG------RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G GLDG DG+PG G DG PG NG +G+ GK G PG G G G
Sbjct: 130 VPGEPGLDGIPGRAGADGIPGRDGKDGTPGINGQNGVDGKHGTPGPVGPSGPTG 183
>gi|156554469|ref|XP_001604389.1| PREDICTED: hypothetical protein LOC100120786 [Nasonia vitripennis]
Length = 832
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 36/43 (83%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GLDG DG+PGEPGLDG+PGR+G DG+PG+DG PG +G PG G
Sbjct: 171 GLDGIDGIPGEPGLDGLPGRSGNDGVPGQDGKPGLNGTPGAPG 213
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 31/43 (72%), Gaps = 6/43 (13%)
Query: 39 LPGEPGL---DGIPGRNGMDGIPGK---DGLPGKDGIPGTNGT 75
L G PGL DGIPG G+DG+PG+ DG+PG+DG PG NGT
Sbjct: 166 LRGGPGLDGIDGIPGEPGLDGLPGRSGNDGVPGQDGKPGLNGT 208
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 18/73 (24%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI------------------PGKD 61
GR+ + + G+ G G +G PG PG +G GRNG+ G PG+D
Sbjct: 189 GRSGNDGVPGQDGKPGLNGTPGAPGRNGTDGRNGLPGAQGPQGPPGTPGKMGLRGPPGQD 248
Query: 62 GLPGKDGIPGTNG 74
G PG+DG PG G
Sbjct: 249 GRPGQDGSPGLPG 261
>gi|50284839|ref|XP_444847.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524149|emb|CAG57740.1| unnamed protein product [Candida glabrata]
Length = 794
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G+ G G+PG G+DG+PG +G+DGIPG DG+PG DGI G +G
Sbjct: 364 IPGTSGIPGASGVPGVDGVDGVPGVDGVDGIPGVDGIPGIDGISGIDG 411
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 12/79 (15%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT---------KTD 78
SG G+DG DG+PG G+DGIPG +DGIPG DG+ G DGI G G +T
Sbjct: 374 SGVPGVDGVDGVPGVDGVDGIPG---VDGIPGIDGISGIDGIDGAIGDLFSQISELFRTV 430
Query: 79 HYAMGADTKSFSDGVLPSV 97
+ D K F+ +P++
Sbjct: 431 DLYVSKDGKDFNRANIPAI 449
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Query: 27 ISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDG---LPGKDGIPGTNG 74
I G G+ G G+PG PG G+PG +G+DG+PG DG +PG DGIPG +G
Sbjct: 352 IPGMPGIPGASGIPGTSGIPGASGVPGVDGVDGVPGVDGVDGIPGVDGIPGIDG 405
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/48 (54%), Positives = 30/48 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
ISG G+ L G PG+ GIPG GM GIPG G+PG GIPG +G
Sbjct: 328 ISGIPGISDIPHLSGIPGISGIPGIPGMPGIPGASGIPGTSGIPGASG 375
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
ISG + G G+ P L GIPG +G+ GIPG G+PG GIPGT+G
Sbjct: 322 ISGFPSISGIPGISDIPHLSGIPGISGIPGIPGMPGIPGASGIPGTSG 369
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGM---DGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G+ G G+PG PG+ GIPG +G+ GIPG G+PG DG+ G G G D
Sbjct: 342 GIPGISGIPGIPGMPGIPGASGIPGTSGIPGASGVPGVDGVDGVPGVDGVDGIPGVDGIP 401
Query: 89 FSDGV 93
DG+
Sbjct: 402 GIDGI 406
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 27 ISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
IS G+ G G P G PG+ IP +G+ GI G G+PG GIPG +G G
Sbjct: 313 ISNFPGIPGISGFPSISGIPGISDIPHLSGIPGISGIPGIPGMPGIPGASGIPGTSGIPG 372
Query: 84 ADTKSFSDGV 93
A DGV
Sbjct: 373 ASGVPGVDGV 382
Score = 38.1 bits (87), Expect = 0.75, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGI---PGKDGLPGKDGIPGTNG 74
G PG PG+ G P +G+ GI P G+PG GIPG G
Sbjct: 312 GISNFPGIPGISGFPSISGIPGISDIPHLSGIPGISGIPGIPG 354
Score = 34.3 bits (77), Expect = 8.8, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
LP P + PG + GIPG G P GIPG
Sbjct: 301 LPPTPTVSDFPGISNFPGIPGISGFPSISGIPG 333
>gi|425453265|ref|ZP_18833023.1| hypothetical protein MICAF_40005 [Microcystis aeruginosa PCC
9807]
gi|389802415|emb|CCI18522.1| hypothetical protein MICAF_40005 [Microcystis aeruginosa PCC
9807]
Length = 793
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 37/64 (57%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G GL G G PG+PG DG PG++G DG PGKDG GK+G PG +G G D K
Sbjct: 20 GARGLQGPKGDPGKPGKDGKPGKDGKDGKPGKDGKEGKEGKPGKDGRDGKDGKPGKDGKE 79
Query: 89 FSDG 92
+G
Sbjct: 80 GKEG 83
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI---PGKDGLPGKDGIPG 71
D RD R + G G G+DG PG+ G DG PG++G +G PGKDG GKDG PG
Sbjct: 16 DGRDGARGLQGP-KGDPGKPGKDGKPGKDGKDGKPGKDGKEGKEGKPGKDGRDGKDGKPG 74
Query: 72 TNGTKTDHYAMGADTKSFSDG 92
+G + G D + DG
Sbjct: 75 KDGKEGKEGKPGKDGRDGKDG 95
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G DGRDG G G G PG+ G DG PGKDG KDG PG +G + G D +
Sbjct: 11 GDPGRDGRDGARGLQGPKGDPGKPGKDGKPGKDG---KDGKPGKDGKEGKEGKPGKDGRD 67
Query: 89 FSDG 92
DG
Sbjct: 68 GKDG 71
Score = 41.6 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 22/37 (59%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G+PG DG G G+ G G G PGKDG PG +G
Sbjct: 8 GPKGDPGRDGRDGARGLQGPKGDPGKPGKDGKPGKDG 44
>gi|195040180|ref|XP_001991018.1| GH12447 [Drosophila grimshawi]
gi|193900776|gb|EDV99642.1| GH12447 [Drosophila grimshawi]
Length = 953
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR GLDGRDG+PGEPGLDG+PGR G D GK+GLPG+DG G +G
Sbjct: 324 GRSGLDGRDGVPGEPGLDGVPGRAGAD---GKNGLPGRDGKDGMHG 366
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 17/66 (25%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI-----------PGKDGLP------GKDGI 69
+ GR G DG++GLPG G DG+ G++G DG+ PG+ GL G+ G
Sbjct: 343 VPGRAGADGKNGLPGRDGKDGMHGKDGKDGMSITGPKGAQGPPGERGLKGIAGPRGRPGK 402
Query: 70 PGTNGT 75
PGTNGT
Sbjct: 403 PGTNGT 408
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 32 GLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G G GL DG+PG G+DG+PG+ G GK+G+PG +G
Sbjct: 315 GPKGDPGSVGRSGLDGRDGVPGEPGLDGVPGRAGADGKNGLPGRDG 360
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 21/87 (24%)
Query: 32 GLDGRDGL-----------PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G DG+DG+ PGE GL GI G G G PG +G P G+PG N K +
Sbjct: 366 GKDGKDGMSITGPKGAQGPPGERGLKGIAGPRGRPGKPGTNGTP---GVPGINTWKM-QF 421
Query: 81 AMGADTK------SFSDGVLPSVQRAI 101
G+ + S +D P+V+R++
Sbjct: 422 PNGSASNDLLIPPSITDVSSPNVRRSV 448
>gi|194768126|ref|XP_001966164.1| GF19364 [Drosophila ananassae]
gi|190623049|gb|EDV38573.1| GF19364 [Drosophila ananassae]
Length = 960
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR GLDGRDG+PGEPGLDG+PGR G DG K+GLPG+DG G +G
Sbjct: 331 GRAGLDGRDGVPGEPGLDGVPGRAGADG---KNGLPGRDGKDGLHG 373
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 17/66 (25%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI-----------PGKDGLP------GKDGI 69
+ GR G DG++GLPG G DG+ G++G DG+ PG+ GL G+ G
Sbjct: 350 VPGRAGADGKNGLPGRDGKDGLHGKDGKDGLSITGPKGAQGPPGERGLKGIAGPRGRPGK 409
Query: 70 PGTNGT 75
PGTNGT
Sbjct: 410 PGTNGT 415
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 28 SGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G G G G GL DG+PG G+DG+PG+ G GK+G+PG +G
Sbjct: 318 AGPRGQKGDAGAVGRAGLDGRDGVPGEPGLDGVPGRAGADGKNGLPGRDG 367
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 28/56 (50%), Gaps = 14/56 (25%)
Query: 32 GLDGRDGL-----------PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G DG+DGL PGE GL GI G G G PG +G P G+PG N K
Sbjct: 373 GKDGKDGLSITGPKGAQGPPGERGLKGIAGPRGRPGKPGTNGTP---GVPGINAWK 425
>gi|391340309|ref|XP_003744485.1| PREDICTED: gliomedin-like [Metaseiulus occidentalis]
Length = 762
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/47 (59%), Positives = 32/47 (68%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G GLDG DG PG+PGLDG G G DG G G G+DGIPG++GT
Sbjct: 138 GEPGLDGVDGTPGQPGLDGTLGAQGADGPKGDKGEQGEDGIPGSHGT 184
>gi|321464115|gb|EFX75125.1| hypothetical protein DAPPUDRAFT_323635 [Daphnia pulex]
Length = 949
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 42/60 (70%), Gaps = 9/60 (15%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPGK------DGIPGTNGTKTD 78
+G GL+GRDG+PGEPGLDG+PGR+ G DGI G DGLPG+ DG PGT G K D
Sbjct: 272 TGLPGLNGRDGVPGEPGLDGVPGRSGTPGFDGISGMDGLPGQAGHNGIDGNPGTPGEKGD 331
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 29/40 (72%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ GLPG G DG+PG G+DG+PG+ G PG DGI G +G
Sbjct: 270 GKTGLPGLNGRDGVPGEPGLDGVPGRSGTPGFDGISGMDG 309
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNG 74
G IG G G G+ G G+PG NG DG+PG+ DG+PG+ G PG +G
Sbjct: 255 GPIGPQGPKGPKGDMGKTGLPGLNGRDGVPGEPGLDGVPGRSGTPGFDG 303
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMD---GIPGKDGLPGKDGIPGTN 73
+G G+DG G PGE G G G G+ G PG+ G+PG GIPG N
Sbjct: 314 AGHNGIDGNPGTPGEKGDSGPIGPQGLTGPRGKPGRSGIPGVPGIPGVN 362
>gi|195166846|ref|XP_002024245.1| GL14936 [Drosophila persimilis]
gi|194107618|gb|EDW29661.1| GL14936 [Drosophila persimilis]
Length = 962
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 36/46 (78%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR GLDGRDG+PGEPGLDG+PGR G D GK+G PG+DG G NG
Sbjct: 334 GRSGLDGRDGVPGEPGLDGVPGRAGAD---GKNGQPGRDGKDGLNG 376
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 14/67 (20%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGI-----------PGRNGMDGIPGKDGLPGKDG 68
GRA + +G+ G DG+DGL G+ G DG+ PG G+ GI G G PGK
Sbjct: 355 GRAGADGKNGQPGRDGKDGLNGKDGKDGLSITGPKGAQGPPGERGLKGIAGPRGRPGK-- 412
Query: 69 IPGTNGT 75
PGTNGT
Sbjct: 413 -PGTNGT 418
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 28/56 (50%), Gaps = 14/56 (25%)
Query: 32 GLDGRDGL-----------PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G DG+DGL PGE GL GI G G G PG +G P G+PG N K
Sbjct: 376 GKDGKDGLSITGPKGAQGPPGERGLKGIAGPRGRPGKPGTNGTP---GVPGINAWK 428
>gi|241669334|ref|XP_002411399.1| colmedin, putative [Ixodes scapularis]
gi|215504031|gb|EEC13525.1| colmedin, putative [Ixodes scapularis]
Length = 707
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
LDGRDGLPG PGLDGIPG G DG GKDG+ G +G+PG NGT
Sbjct: 76 LDGRDGLPGPPGLDGIPGPQGPDGPRGKDGVDGTNGLPGVNGT 118
>gi|198468827|ref|XP_001354827.2| GA19916 [Drosophila pseudoobscura pseudoobscura]
gi|198146589|gb|EAL31882.2| GA19916 [Drosophila pseudoobscura pseudoobscura]
Length = 956
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 36/46 (78%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR GLDGRDG+PGEPGLDG+PGR G DG G+ G GKDG+ G +G
Sbjct: 328 GRSGLDGRDGVPGEPGLDGVPGRAGADGKNGQPGRDGKDGLHGKDG 373
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 14/67 (20%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGI-----------PGRNGMDGIPGKDGLPGKDG 68
GRA + +G+ G DG+DGL G+ G DG+ PG G+ GI G G PGK
Sbjct: 349 GRAGADGKNGQPGRDGKDGLHGKDGKDGLSITGPKGAQGPPGERGLKGIAGPRGRPGK-- 406
Query: 69 IPGTNGT 75
PGTNGT
Sbjct: 407 -PGTNGT 412
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 28/56 (50%), Gaps = 14/56 (25%)
Query: 32 GLDGRDGL-----------PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G DG+DGL PGE GL GI G G G PG +G P G+PG N K
Sbjct: 370 GKDGKDGLSITGPKGAQGPPGERGLKGIAGPRGRPGKPGTNGTP---GVPGINAWK 422
>gi|440293211|gb|ELP86354.1| collagen alpha chain, putative [Entamoeba invadens IP1]
Length = 1203
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
++G G++G+DG+ G+ G++G+ G NG DGI GKDG GKDG+ G +G G +
Sbjct: 853 VNGTNGINGKDGVNGKDGMNGMNGTNGKDGINGKDGANGKDGLNGKDGVNGKDGKDGVNG 912
Query: 87 KSFSDGVLPSVQRAI 101
+ DG V + +
Sbjct: 913 RDGRDGQTTVVTKVV 927
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 35/59 (59%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
G +GL G G DGI G NG +GI GKDG+ GKDG+ G NGT G D + DG+
Sbjct: 837 GINGLNGTNGKDGINGVNGTNGINGKDGVNGKDGMNGMNGTNGKDGINGKDGANGKDGL 895
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G++G +G+ G+ G++G G NGM+G GKDG+ GKDG G +G G D K D
Sbjct: 852 GVNGTNGINGKDGVNGKDGMNGMNGTNGKDGINGKDGANGKDGLNGKDGVNGKDGK---D 908
Query: 92 GV 93
GV
Sbjct: 909 GV 910
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
I+G G +G+DG+ G G +GI NG DG+ GKDG+ G +G G +G A G D
Sbjct: 838 INGLNGTNGKDGINGVNGTNGI---NGKDGVNGKDGMNGMNGTNGKDGINGKDGANGKDG 894
Query: 87 KSFSDGV 93
+ DGV
Sbjct: 895 LNGKDGV 901
>gi|195457114|ref|XP_002075432.1| GK15168 [Drosophila willistoni]
gi|194171517|gb|EDW86418.1| GK15168 [Drosophila willistoni]
Length = 977
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 35/46 (76%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR GLDGRDG+PGEPGLDG+PGR G DG G G GKDG+ G +G
Sbjct: 348 GRAGLDGRDGVPGEPGLDGVPGRAGADGKNGLAGRDGKDGLHGKDG 393
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK---- 87
G G G PGE GL GI G G G PG +G P GIPG N K Y G+ +
Sbjct: 401 GPKGAQGPPGERGLKGIAGPRGRPGKPGTNGTP---GIPGINAWKM-QYPNGSASNDLLI 456
Query: 88 --SFSDGVLPSVQRAI 101
S +D P QR++
Sbjct: 457 PPSITDLRSPDAQRSV 472
>gi|392545028|ref|ZP_10292165.1| hypothetical protein PrubA2_01580 [Pseudoalteromonas rubra ATCC
29570]
Length = 1101
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 37/52 (71%)
Query: 23 ISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I + + G+ GLDG+DG PG+ G+DG G G DG PGKDG PGKDG PG +G
Sbjct: 777 IGSGMPGKDGLDGKDGAPGKDGVDGADGAPGADGAPGKDGAPGKDGAPGKDG 828
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 9/56 (16%)
Query: 29 GRIGLDGRDGLPGE---------PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G+DG DG PG PG DG PG++G+DG PGKDG+ G DG G +G
Sbjct: 795 GKDGVDGADGAPGADGAPGKDGAPGKDGAPGKDGIDGAPGKDGVDGADGADGVDGA 850
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
GR G+DG DG G+ G+DG PG NG+DG G+ G G+ G PG G K D G
Sbjct: 163 GRDGVDGADGADGKDGVDGQDGAPGANGLDGAKGEKGDQGEKGEPGVQGEKGDQGEQG 220
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ +GL G G G G+DG G +G DG+ G+DG PG +G+ G G K D
Sbjct: 149 VGSTVGLKGEPGADGRDGVDGADGADGKDGVDGQDGAPGANGLDGAKGEKGDQ 201
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 24 STV-ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
STV + G G DGRDG+ G G DG G +G DG PG +GL G G G G K
Sbjct: 151 STVGLKGEPGADGRDGVDGADGADGKDGVDGQDGAPGANGLDGAKGEKGDQGEK 204
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+ G+DG+DG PG GLDG G G G G+ G+ G+ G G G +
Sbjct: 175 GKDGVDGQDGAPGANGLDGAKGEKGDQGEKGEPGVQGEKGDQGEQGEQ 222
>gi|410912826|ref|XP_003969890.1| PREDICTED: gliomedin-like [Takifugu rubripes]
Length = 536
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/38 (63%), Positives = 27/38 (71%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G PG+DG+PG NG DGIPG+DGLPG DG G G D
Sbjct: 184 GLPGVDGLPGHNGTDGIPGQDGLPGADGKRGKRGLPGD 221
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGM---DGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
GL G DGLPG G DGIPG++G+ DG GK GLPG G PG G + A G ++
Sbjct: 184 GLPGVDGLPGHNGTDGIPGQDGLPGADGKRGKRGLPGDKGDPGEKGEPGEPGAPGERSQP 243
Query: 89 FSDGVL 94
+D ++
Sbjct: 244 SNDVIV 249
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G +G DG+PG+ GL G G+ G G+PG G PG+ G PG G
Sbjct: 188 VDGLPGHNGTDGIPGQDGLPGADGKRGKRGLPGDKGDPGEKGEPGEPG 235
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+G G+ G+DGLPG G G G G G PG+ G PG+ G PG
Sbjct: 195 NGTDGIPGQDGLPGADGKRGKRGLPGDKGDPGEKGEPGEPGAPG 238
Score = 41.2 bits (95), Expect = 0.075, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 38 GLPGEPGLDGIP---GRNGMDGIP---GKDGLPGKDGIPGTNGTK 76
G PG PG + G G+DG+P G DG+PG+DG+PG +G +
Sbjct: 169 GPPGPPGNRDVAECAGLPGVDGLPGHNGTDGIPGQDGLPGADGKR 213
>gi|94988525|ref|YP_596626.1| collagen-like surface protein [Streptococcus pyogenes MGAS9429]
gi|94542033|gb|ABF32082.1| collagen-like surface protein [Streptococcus pyogenes MGAS9429]
Length = 381
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 41/64 (64%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G+ G DG+DGLPG+ G DG+PG++G DG GKDG GKDG+PG +G G D K
Sbjct: 192 GKDGQDGKDGLPGKDGKDGLPGKDGKDGQNGKDGQNGKDGLPGKDGQNGKDGLPGKDGKD 251
Query: 89 FSDG 92
DG
Sbjct: 252 GQDG 255
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+ G+ G +G+DGLPG + G DG+PG++G DG GKDGLPGKDG G G G
Sbjct: 163 LPGKDGQNGKDGLPGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGLPGKDGKDGQNG 222
Query: 84 ADTKSFSDGV 93
D ++ DG+
Sbjct: 223 KDGQNGKDGL 232
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 39/53 (73%), Gaps = 6/53 (11%)
Query: 28 SGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNG 74
+G+ G +G+DGLPG + G DG+PG++G DG GKDGLP GKDG+PG +G
Sbjct: 221 NGKDGQNGKDGLPGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGLPGKDG 273
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A +G +G G+DG G+ GL G G+NG DG+PGKDG GKDG+PG
Sbjct: 130 EQGQRGETGPAGPQGPAGPVGPAGKDGQDGKDGLPGKDGQNGKDGLPGKDGQNGKDGLPG 189
Query: 72 TNG 74
+G
Sbjct: 190 KDG 192
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI---PGTNGTKTDHYAMG 83
+ G+ G +G+DGLPG+ G DG G++G+ G GKDGLPGKDG PG KT
Sbjct: 232 LPGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGLPGKDGKDGQPGKPAPKTPEVPQK 291
Query: 84 ADT 86
DT
Sbjct: 292 PDT 294
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 39/56 (69%), Gaps = 9/56 (16%)
Query: 28 SGRIGLDGRDGLPG---EPGLDGIPGR---NGMDGIP---GKDGLPGKDGIPGTNG 74
+G+ G DG+DGLPG + G DG+PG+ NG DG+P GKDG GKDG+PG +G
Sbjct: 152 AGKDGQDGKDGLPGKDGQNGKDGLPGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDG 207
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 6/54 (11%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGR---NGMDGIP---GKDGLPGKDGIPGTNG 74
+ G+ G DG++G G+ G DG+PG+ NG DG+P GKDG GKDG+PG +G
Sbjct: 211 LPGKDGKDGQNGKDGQNGKDGLPGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDG 264
>gi|94992348|ref|YP_600447.1| collagen-like surface protein [Streptococcus pyogenes MGAS2096]
gi|94545856|gb|ABF35903.1| Collagen-like surface protein [Streptococcus pyogenes MGAS2096]
Length = 402
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 41/64 (64%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G+ G DG+DGLPG+ G DG+PG++G DG GKDG GKDG+PG +G G D K
Sbjct: 213 GKDGQDGKDGLPGKDGKDGLPGKDGKDGQNGKDGQNGKDGLPGKDGQNGKDGLPGKDGKD 272
Query: 89 FSDG 92
DG
Sbjct: 273 GQDG 276
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 37/47 (78%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ GL G+DG G+ G DG+PG++G DG+PGKDG GKDG+PG +G
Sbjct: 167 NGKDGLPGKDGKDGQDGKDGLPGKDGKDGLPGKDGQNGKDGLPGKDG 213
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHY 80
+ G+ G +G+DGLPG + G DG+PG++G DG GKDGLP GKDG+PG +G
Sbjct: 148 LPGKDGQNGKDGLPGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGLPGKDGQNGKDG 207
Query: 81 AMGADTKSFSDG 92
G D K DG
Sbjct: 208 LPGKDGKDGQDG 219
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 12/77 (15%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGR---NGMDGIPGKDG---------LPGKDGIPGTNGTK 76
G+ G DG+DGLPG+ G DG+PG+ NG DG+PGKDG LPGKDG G G
Sbjct: 177 GKDGQDGKDGLPGKDGKDGLPGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGLPGKD 236
Query: 77 TDHYAMGADTKSFSDGV 93
G D ++ DG+
Sbjct: 237 GKDGQNGKDGQNGKDGL 253
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G+ G +G+DGLPG+ G DG G++G+ G GKDGLPGKDG G NG
Sbjct: 196 LPGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGLPGKDGKDGQNG 243
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 39/53 (73%), Gaps = 6/53 (11%)
Query: 28 SGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNG 74
+G+ G +G+DGLPG + G DG+PG++G DG GKDGLP GKDG+PG +G
Sbjct: 242 NGKDGQNGKDGLPGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGLPGKDG 294
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI---PGTNGTKTDHYAMG 83
+ G+ G +G+DGLPG+ G DG G++G+ G GKDGLPGKDG PG KT
Sbjct: 253 LPGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGLPGKDGKDGQPGKPAPKTPEVPQK 312
Query: 84 ADT 86
DT
Sbjct: 313 PDT 315
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 34/47 (72%), Gaps = 6/47 (12%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ G DG+DGLPG+ G +NG DG+PGKDG GKDG+PG +G
Sbjct: 137 AGKDGQDGKDGLPGKDG------QNGKDGLPGKDGQNGKDGLPGKDG 177
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 6/54 (11%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGR---NGMDGIP---GKDGLPGKDGIPGTNG 74
+ G+ G DG++G G+ G DG+PG+ NG DG+P GKDG GKDG+PG +G
Sbjct: 232 LPGKDGKDGQNGKDGQNGKDGLPGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDG 285
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 34/64 (53%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G DG G G G G G++G DG+PGKDG GKDG+PG +G G D K
Sbjct: 120 GPAGKDGEAGAQGPVGPAGKDGQDGKDGLPGKDGQNGKDGLPGKDGQNGKDGLPGKDGKD 179
Query: 89 FSDG 92
DG
Sbjct: 180 GQDG 183
>gi|15675046|ref|NP_269220.1| hypothetical protein SPy_1054 [Streptococcus pyogenes SF370]
gi|13622199|gb|AAK33941.1| putative collagen-like protein [Streptococcus pyogenes M1 GAS]
Length = 293
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 38/59 (64%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG PG KT DT
Sbjct: 148 NGKDGLPGKDGKDGQDGKDGLPGKDGKDGQNGKDGLPGKDGQPGKPAPKTPEVPQNPDT 206
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 38/56 (67%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G A +G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG G NG
Sbjct: 124 VGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGQNG 179
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK 66
+ G+ G DG+DG G PG DG G+NG DG+PGKDG PGK
Sbjct: 153 LPGKDGKDGQDGKDGLPGKDGKDGQNGKDGLPGKDGQPGK 192
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
R D G G +G G+DG + G DG+PG++G DG GKDGLPGKDG G +G
Sbjct: 109 RGDKGETGDKGAQGPVGPAGKDG---QNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDG 164
>gi|71910590|ref|YP_282140.1| hypothetical protein M5005_Spy_0777 [Streptococcus pyogenes
MGAS5005]
gi|410680450|ref|YP_006932852.1| LPXTG-motif cell wall anchor domain-containing protein
[Streptococcus pyogenes A20]
gi|71853372|gb|AAZ51395.1| collagen-like surface protein [Streptococcus pyogenes MGAS5005]
gi|395453827|dbj|BAM30166.1| hypothetical protein M1GAS476_0836 [Streptococcus pyogenes M1 476]
gi|409693039|gb|AFV37899.1| LPXTG-motif cell wall anchor domain protein [Streptococcus pyogenes
A20]
Length = 293
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 38/59 (64%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG PG KT DT
Sbjct: 148 NGKDGLPGKDGKDGQDGKDGLPGKDGKDGQDGKDGLPGKDGQPGKPAPKTPEVPQNPDT 206
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 38/56 (67%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G A +G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG G +G
Sbjct: 124 VGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGQDG 179
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
R D G G +G G+DG + G DG+PG++G DG GKDGLPGKDG G +G
Sbjct: 109 RGDKGETGDKGAQGPVGPAGKDG---QNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDG 164
>gi|427730259|ref|YP_007076496.1| collagen triple helix repeat protein [Nostoc sp. PCC 7524]
gi|427366178|gb|AFY48899.1| collagen triple helix repeat protein [Nostoc sp. PCC 7524]
Length = 702
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/49 (59%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR G++GRDG PG G L GIPGR G++GI G DG PG GIPG G
Sbjct: 310 GRNGVNGRDGRPGRDGARGLQGIPGRPGINGINGIDGRPGLQGIPGRRG 358
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 17 RDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
RD R + I GR G++G +G+ G PGL GIPGR G G PG +G PG +G G +
Sbjct: 323 RDGARGLQG-IPGRPGINGINGIDGRPGLQGIPGRRGEPGFPGANGRPGINGRDGRDVNP 381
Query: 77 TDHYAMGADTKSFSDGVLPSVQRAIAAGL 105
D + A + GV + Q +A G
Sbjct: 382 ADLADIKARLAAIQSGV-NNTQSQLALGF 409
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 26/42 (61%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
L R G+PG PG DG G NG DG PG+DG G GIPG G
Sbjct: 296 LQNRPGIPGRPGRDGRNGVNGRDGRPGRDGARGLQGIPGRPG 337
>gi|291542563|emb|CBL15673.1| Collagen triple helix repeat (20 copies) [Ruminococcus bromii
L2-63]
Length = 608
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 11/85 (12%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G+ G+DG+DG+ G+ G DGI G +G DGI GKDG GKDG G NGT D
Sbjct: 130 LDGKDGIDGKDGIDGKNGADGINGTDGKDGIDGKDGADGKDGADGINGT---------DG 180
Query: 87 KSFSDGVLPSVQRAIAAGLVIYRFH 111
K DG VQR + +R+
Sbjct: 181 KDGIDGKNIEVQRTTE--YIQWRYE 203
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G+ GLDG+DG G+ G DGI G +G +G+ GK+GL GKDGI G +G + A G +
Sbjct: 95 NGKNGLDGKDGTDGKNGTDGINGTDGKNGVDGKNGLDGKDGIDGKDGIDGKNGADGINGT 154
Query: 88 SFSDGV 93
DG+
Sbjct: 155 DGKDGI 160
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 22 AISTV--ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
A++T+ G+ GL+G+DGL G+ G+DG G NG +G+ GKDG GK+G G NGT
Sbjct: 63 ALNTLRGTDGKNGLNGKDGLDGKNGVDGKDGTNGKNGLDGKDGTDGKNGTDGINGT 118
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++G+ GLDG++G+ G+ DG G+NG+DG G DG G DGI GT+G
Sbjct: 76 LNGKDGLDGKNGVDGK---DGTNGKNGLDGKDGTDGKNGTDGINGTDG 120
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 18/66 (27%)
Query: 27 ISGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIP---------------GKDGLPGKDG 68
+ G+ G+DG+DG G+ GLDG G+NG DGI GKDG+ GKDG
Sbjct: 82 LDGKNGVDGKDGTNGKNGLDGKDGTDGKNGTDGINGTDGKNGVDGKNGLDGKDGIDGKDG 141
Query: 69 IPGTNG 74
I G NG
Sbjct: 142 IDGKNG 147
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 5 QGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP 64
+ LQ V D + +++ G G DG+DG+ G+ G+DG G +G DG GKDG
Sbjct: 341 ENNLQWRYVGDETWLNLYDLSILKGLDGADGKDGINGKDGVDGKDGVDGKDGADGKDGTN 400
Query: 65 GKDGIPGTNGT 75
G++G G +G
Sbjct: 401 GQNGADGKDGN 411
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 28/47 (59%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
L G G DG G NG DG+ GKDG+ GKDG G +GT + A G D
Sbjct: 363 LKGLDGADGKDGINGKDGVDGKDGVDGKDGADGKDGTNGQNGADGKD 409
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 45 LDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGVLPSV 97
L G+ G +G DGI GKDG+ GKDG+ G +G G + DG P +
Sbjct: 363 LKGLDGADGKDGINGKDGVDGKDGVDGKDGADGKDGTNGQNGADGKDGNTPFI 415
>gi|339247069|ref|XP_003375168.1| putative nematode cuticle collagen domain protein [Trichinella
spiralis]
gi|316971547|gb|EFV55305.1| putative nematode cuticle collagen domain protein [Trichinella
spiralis]
Length = 570
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 33/57 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
I G+ GL G G PGEPG+ G PG++G DG G G PG G+PG G + MG
Sbjct: 354 IRGKKGLPGVPGKPGEPGVKGNPGKDGSDGARGDPGPPGSTGLPGPKGKEGKSGPMG 410
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G G DG DG G+PG G G G G GK G G+ GIPG + T +++
Sbjct: 372 VKGNPGKDGSDGARGDPGPPGSTGLPGPKGKEGKSGPMGQIGIPGPDATYSNY 424
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 23/70 (32%)
Query: 29 GRIGLDGRDGLPGEP---------------GLDG--------IPGRNGMDGIPGKDGLPG 65
G G+ GR+G PG+P G+ G I G+ G+ G+PGK G PG
Sbjct: 312 GNPGMHGRNGSPGKPGDMGPPGTPGPKGKVGMKGPSGMDKRTIRGKKGLPGVPGKPGEPG 371
Query: 66 KDGIPGTNGT 75
G PG +G+
Sbjct: 372 VKGNPGKDGS 381
Score = 35.0 bits (79), Expect = 6.2, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 23/82 (28%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGR---------------------NGMDG--IPGKDGL 63
+ G GL G G PG G +G PG+ +GMD I GK GL
Sbjct: 301 VLGPQGLSGSPGNPGMHGRNGSPGKPGDMGPPGTPGPKGKVGMKGPSGMDKRTIRGKKGL 360
Query: 64 PGKDGIPGTNGTKTDHYAMGAD 85
PG G PG G K + G+D
Sbjct: 361 PGVPGKPGEPGVKGNPGKDGSD 382
>gi|348541541|ref|XP_003458245.1| PREDICTED: gliomedin-like [Oreochromis niloticus]
Length = 551
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGM---DGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+GL G DGLPG G DGIPG NG+ DG G+ G PG+ G PG G + + G + +
Sbjct: 195 LGLPGADGLPGHNGTDGIPGLNGLPGADGKRGRKGPPGEKGEPGERGERGEPGPPGENIQ 254
Query: 88 SFSDGVL 94
+D ++
Sbjct: 255 PSNDAII 261
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G +G DG+PG GL G G+ G G PG+ G PG+ G G G
Sbjct: 202 GLPGHNGTDGIPGLNGLPGADGKRGRKGPPGEKGEPGERGERGEPG 247
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 25/48 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G DG GL G PG DG GR G G G+ G G+ G PG G
Sbjct: 203 LPGHNGTDGIPGLNGLPGADGKRGRKGPPGEKGEPGERGERGEPGPPG 250
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
+G G+ G +GLPG G G G G G PG+ G G+ G PG N
Sbjct: 207 NGTDGIPGLNGLPGADGKRGRKGPPGEKGEPGERGERGEPGPPGEN 252
>gi|90412671|ref|ZP_01220673.1| putative lipoprotein [Photobacterium profundum 3TCK]
gi|90326479|gb|EAS42891.1| putative lipoprotein [Photobacterium profundum 3TCK]
Length = 683
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/66 (48%), Positives = 38/66 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G DG DG+ GE G DGI G NG DGI G DG G DG+ G+NG GA K
Sbjct: 228 TGEAGKDGVDGIDGEKGTDGIDGINGKDGINGADGRDGVDGLNGSNGRDGVDGERGASGK 287
Query: 88 SFSDGV 93
+ DG+
Sbjct: 288 NGIDGI 293
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I G G DG +G G G+DG+ G NG DG+ G+ G GK+GI G NG +
Sbjct: 248 IDGINGKDGINGADGRDGVDGLNGSNGRDGVDGERGASGKNGIDGINGLNAE 299
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I+G+ G++G DG G GL+G GR+G+DG G G G DGI G N D
Sbjct: 251 INGKDGINGADGRDGVDGLNGSNGRDGVDGERGASGKNGIDGINGLNAEPAD 302
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 33/64 (51%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G G +G GE G DG+ G +G G G DG+ GKDGI G +G G++ +
Sbjct: 217 GEKGDKGDNGDTGEAGKDGVDGIDGEKGTDGIDGINGKDGINGADGRDGVDGLNGSNGRD 276
Query: 89 FSDG 92
DG
Sbjct: 277 GVDG 280
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
G G+ G +G G G DG+ G DG G DGI G NG + GAD + DG+
Sbjct: 217 GEKGDKGDNGDTGEAGKDGVDGIDGEKGTDGIDGINGKDGIN---GADGRDGVDGL 269
>gi|29466645|dbj|BAC66788.1| collagen like protein ClgA [Streptococcus pyogenes]
gi|29466647|dbj|BAC66789.1| collagen like protein ClgA [Streptococcus pyogenes]
Length = 228
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 38/59 (64%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG PG KT DT
Sbjct: 83 NGKDGLPGKDGKDGQDGKDGLPGKDGKDGQDGKDGLPGKDGQPGKPAPKTPEVPQNPDT 141
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 38/56 (67%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G A +G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG G +G
Sbjct: 59 VGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGQDG 114
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
R D G G +G G+DG + G DG+PG++G DG GKDGLPGKDG G +G
Sbjct: 44 RGDKGETGDKGAQGPVGPAGKDG---QNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDG 99
>gi|421533212|ref|ZP_15979520.1| collagen-like surface-anchored protein, partial [Streptococcus
agalactiae STIR-CD-17]
gi|403641435|gb|EJZ02458.1| collagen-like surface-anchored protein, partial [Streptococcus
agalactiae STIR-CD-17]
Length = 235
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
GR G DGR G G+ G DG+ GRNG DG+PG+DG+ GKDG PG +G G D
Sbjct: 97 AKGRDGKDGRKGQDGKHGTDGVDGRNGTDGMPGRDGVDGKDGAPGRDGRDGKDGQPGLDG 156
Query: 87 KSFSDG 92
K+ DG
Sbjct: 157 KAGKDG 162
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+GR G GRDG G G DG G +G+DG G DG+PG+DG+ G +G
Sbjct: 92 NGRDGAKGRDGKDGRKGQDGKHGTDGVDGRNGTDGMPGRDGVDGKDGA 139
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 35/66 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+GR G GRDG G G DG G NG G G+DG G+DG G G H G D +
Sbjct: 62 NGRNGAKGRDGQDGAKGQDGKNGTNGAAGKNGRDGAKGRDGKDGRKGQDGKHGTDGVDGR 121
Query: 88 SFSDGV 93
+ +DG+
Sbjct: 122 NGTDGM 127
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR + + GR G+DG+DG PG G R+G DG PG DG GKDG G NG
Sbjct: 120 GRNGTDGMPGRDGVDGKDGAPGRDG------RDGKDGQPGLDGKAGKDGRDGMNG 168
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR G+ G +G +G G+ G DG GR+G DG G+DG G DG+ G NGT
Sbjct: 69 GRDGQDGAKGQDGKNGTNGAAGKNGRDGAKGRDGKDGRKGQDGKHGTDGVDGRNGT 124
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 30 RIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G DG DG+ G+ G +G GR+G DG G+DG G +G G NG
Sbjct: 49 QDGTDGTDGVAGKNGRNGAKGRDGQDGAKGQDGKNGTNGAAGKNG 93
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ GR G DG G G+ G +G G+NG DG G+DG G+ G G +GT
Sbjct: 59 AGKNGRNGAKGRDGQDGAKGQDGKNGTNGAAGKNGRDGAKGRDGKDGRKGQDGKHGT 115
>gi|391342834|ref|XP_003745720.1| PREDICTED: uncharacterized protein LOC100902465 [Metaseiulus
occidentalis]
Length = 846
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 35/50 (70%), Gaps = 3/50 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGT 75
G GL G+DGLPG+PGLDG+PG G DG G+D GLPG G PG NGT
Sbjct: 237 GNEGLPGQDGLPGQPGLDGMPGTPGRDGTSGRDGLSGLPGLAGRPGRNGT 286
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 29/43 (67%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G DG+PG PG DG GR+G+ G+PG G PG++G GT G
Sbjct: 249 GQPGLDGMPGTPGRDGTSGRDGLSGLPGLAGRPGRNGTDGTPG 291
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 24/34 (70%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG 62
GR G GRDGL G PGL G PGRNG DG PG+ G
Sbjct: 261 GRDGTSGRDGLSGLPGLAGRPGRNGTDGTPGEAG 294
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GL G G GEPG +G+PG++G+ G PG DG+PG G GT+G
Sbjct: 225 GLPGTKGEKGEPGNEGLPGQDGLPGQPGLDGMPGTPGRDGTSG 267
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPGTNG 74
G PG PG G G G +G+PG+DGLPG+ DG+PGT G
Sbjct: 222 GPPGLPGTKGEKGEPGNEGLPGQDGLPGQPGLDGMPGTPG 261
>gi|90410265|ref|ZP_01218281.1| hypothetical protein P3TCK_19940 [Photobacterium profundum 3TCK]
gi|90328506|gb|EAS44790.1| hypothetical protein P3TCK_19940 [Photobacterium profundum 3TCK]
Length = 664
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 37/65 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G G+DG+ GE G DGI G NG DGI G DG G DG+ G+NG GA K+
Sbjct: 210 GDTGEAGKDGIDGEKGTDGIDGINGKDGINGADGRDGVDGLNGSNGRDGVDGERGASGKN 269
Query: 89 FSDGV 93
DGV
Sbjct: 270 GIDGV 274
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGL---------DGIPGRNGMDGIPGKDGLPG 65
D+ D G A I G G DG DG+ G+ G+ DG+ G NG DG+ G+ G G
Sbjct: 208 DKGDTGEAGKDGIDGEKGTDGIDGINGKDGINGADGRDGVDGLNGSNGRDGVDGERGASG 267
Query: 66 KDGIPGTNGTKTD 78
K+GI G NG +
Sbjct: 268 KNGIDGVNGLNAE 280
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I+G+ G++G DG G GL+G GR+G+DG G G G DG+ G N D
Sbjct: 232 INGKDGINGADGRDGVDGLNGSNGRDGVDGERGASGKNGIDGVNGLNAEPAD 283
>gi|380021143|ref|XP_003694433.1| PREDICTED: uncharacterized protein LOC100867093 [Apis florea]
Length = 1581
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+T ++G G G +P +PG GIPG + + GIPG G+PG G PGT+ T
Sbjct: 240 NTEMTGVSGTPGTSSIPEKPGTPGIPGTSAIPGIPGTSGIPGTPGFPGTSST 291
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 25 TVISGRIGLDG---RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK------DGIPGTNGT 75
T +SG G + G PG PG IPG G GIPG G PG GI GT+GT
Sbjct: 244 TGVSGTPGTSSIPEKPGTPGIPGTSAIPGIPGTSGIPGTPGFPGTSSTSEISGISGTSGT 303
Query: 76 KTDHYAMG 83
+ G
Sbjct: 304 PGTSHTPG 311
>gi|321476285|gb|EFX87246.1| hypothetical protein DAPPUDRAFT_97324 [Daphnia pulex]
Length = 268
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
++G G DG DG PG PG DG PG +G DG PG DG PG DG+PG +G A G
Sbjct: 178 LNGSPGADGADGAPGLDGAPGADGTPGLDGADGPPGADGAPGADGLPGADGAPGLDGAPG 237
Query: 84 ADTKSFSDGV 93
AD +DGV
Sbjct: 238 ADGPPGADGV 247
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
I G G+DG G G PGL+G PG +G DG PG DG PG DG PG +G GAD
Sbjct: 160 IDGVPGVDGDPGFDGAPGLNGSPGADGADGAPGLDGAPGADGTPGLDGADG---PPGADG 216
Query: 87 KSFSDGV 93
+DG+
Sbjct: 217 APGADGL 223
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Query: 29 GRIGLDGRDGLPGE---PGLDGIPGRNG---MDGIPGKDGLPGKDGIPGTNGT 75
G GLDG DG PG PG DG+PG +G +DG PG DG PG DG+PG +G
Sbjct: 201 GTPGLDGADGPPGADGAPGADGLPGADGAPGLDGAPGADGPPGADGVPGLDGA 253
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 30/48 (62%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G+DG G+ G+PG DG PG NG G G DG PG DG PG +GT
Sbjct: 156 GFPGIDGVPGVDGDPGFDGAPGLNGSPGADGADGAPGLDGAPGADGTP 203
>gi|423257813|ref|ZP_17238736.1| hypothetical protein HMPREF1055_01013 [Bacteroides fragilis
CL07T00C01]
gi|423265220|ref|ZP_17244223.1| hypothetical protein HMPREF1056_01910 [Bacteroides fragilis
CL07T12C05]
gi|387778181|gb|EIK40277.1| hypothetical protein HMPREF1055_01013 [Bacteroides fragilis
CL07T00C01]
gi|392702878|gb|EIY96022.1| hypothetical protein HMPREF1056_01910 [Bacteroides fragilis
CL07T12C05]
Length = 772
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 36/57 (63%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G+ G++G+DG G+ G++G G NG DGI GKDG GKDGI G +G A G D
Sbjct: 237 GKDGINGKDGANGKDGINGKDGANGKDGINGKDGANGKDGINGKDGAAGKDGANGKD 293
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ G++G+DG G+ G++G G NG DGI GKDG GKDG G +G
Sbjct: 248 NGKDGINGKDGANGKDGINGKDGANGKDGINGKDGAAGKDGANGKDG 294
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
I+G+ G +G+DG+ G+ G +G G NG DG GKDG+ GKDG G +G A G
Sbjct: 241 INGKDGANGKDGINGKDGANGKDGINGKDGANGKDGINGKDGAAGKDGANGKDGANG 297
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
G+DG+ G+ G +G G NG DG GKDG+ GKDG G +G A G D + DG
Sbjct: 237 GKDGINGKDGANGKDGINGKDGANGKDGINGKDGANGKDGINGKDGAAGKDGANGKDG 294
Score = 37.7 bits (86), Expect = 0.97, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK 66
+G+ G++G+DG G+ G++G G G DG GKDG GK
Sbjct: 260 NGKDGINGKDGANGKDGINGKDGAAGKDGANGKDGANGK 298
Score = 35.4 bits (80), Expect = 4.6, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 19 IGRAISTVISGR------IGLDGR--DGLPGEPGLDGIPGRN------GMDGIPGKDGLP 64
IG + VI+G+ IG DGR + + G G I G++ G DGI GKDG
Sbjct: 189 IGENGNWVINGKDTGKAAIGKDGRSPEVIIGTNGNWYINGKDTGIRAYGKDGINGKDGAN 248
Query: 65 GKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
GKDGI G +G G D + DG+
Sbjct: 249 GKDGINGKDGANGKDGINGKDGANGKDGI 277
>gi|60681475|ref|YP_211619.1| hypothetical protein BF1987 [Bacteroides fragilis NCTC 9343]
gi|60492909|emb|CAH07685.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
Length = 784
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 36/57 (63%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G+ G++G+DG G+ G++G G NG DGI GKDG GKDGI G +G A G D
Sbjct: 246 GKDGINGKDGANGKDGINGKDGANGKDGINGKDGANGKDGINGKDGAAGKDGANGKD 302
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ G++G+DG G+ G++G G NG DGI GKDG GKDG G +G
Sbjct: 257 NGKDGINGKDGANGKDGINGKDGANGKDGINGKDGAAGKDGANGKDG 303
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
I+G+ G +G+DG+ G+ G +G G NG DG GKDG+ GKDG G +G A G
Sbjct: 250 INGKDGANGKDGINGKDGANGKDGINGKDGANGKDGINGKDGAAGKDGANGKDGANG 306
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
G+DG+ G+ G +G G NG DG GKDG+ GKDG G +G A G D + DG
Sbjct: 246 GKDGINGKDGANGKDGINGKDGANGKDGINGKDGANGKDGINGKDGAAGKDGANGKDG 303
Score = 37.7 bits (86), Expect = 0.99, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK 66
+G+ G++G+DG G+ G++G G G DG GKDG GK
Sbjct: 269 NGKDGINGKDGANGKDGINGKDGAAGKDGANGKDGANGK 307
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 19 IGRAISTVISGR------IGLDGR--DGLPGEPGLDGIPGRN------GMDGIPGKDGLP 64
IG + VI+G+ IG DGR + + G G I G++ G DGI GKDG
Sbjct: 198 IGENGNWVINGKDTGKAAIGKDGRSPEVIIGTNGNWYINGKDTGIRAYGKDGINGKDGAN 257
Query: 65 GKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
GKDGI G +G G D + DG+
Sbjct: 258 GKDGINGKDGANGKDGINGKDGANGKDGI 286
>gi|53713208|ref|YP_099200.1| hypothetical protein BF1918 [Bacteroides fragilis YCH46]
gi|52216073|dbj|BAD48666.1| hypothetical protein [Bacteroides fragilis YCH46]
Length = 784
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 36/57 (63%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G+ G++G+DG G+ G++G G NG DGI GKDG GKDGI G +G A G D
Sbjct: 246 GKDGINGKDGANGKDGINGKDGANGKDGINGKDGANGKDGINGKDGAAGKDGANGKD 302
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ G++G+DG G+ G++G G NG DGI GKDG GKDG G +G
Sbjct: 257 NGKDGINGKDGANGKDGINGKDGANGKDGINGKDGAAGKDGANGKDG 303
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
I+G+ G +G+DG+ G+ G +G G NG DG GKDG+ GKDG G +G A G
Sbjct: 250 INGKDGANGKDGINGKDGANGKDGINGKDGANGKDGINGKDGAAGKDGANGKDGANG 306
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
G+DG+ G+ G +G G NG DG GKDG+ GKDG G +G A G D + DG
Sbjct: 246 GKDGINGKDGANGKDGINGKDGANGKDGINGKDGANGKDGINGKDGAAGKDGANGKDG 303
Score = 37.7 bits (86), Expect = 0.99, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK 66
+G+ G++G+DG G+ G++G G G DG GKDG GK
Sbjct: 269 NGKDGINGKDGANGKDGINGKDGAAGKDGANGKDGANGK 307
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 19 IGRAISTVISGR------IGLDGR--DGLPGEPGLDGIPGRN------GMDGIPGKDGLP 64
IG + VI+G+ IG DGR + + G G I G++ G DGI GKDG
Sbjct: 198 IGENGNWVINGKDTGKAAIGKDGRSPEVIIGTNGNWYINGKDTGIRAYGKDGINGKDGAN 257
Query: 65 GKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
GKDGI G +G G D + DG+
Sbjct: 258 GKDGINGKDGANGKDGINGKDGANGKDGI 286
>gi|13235596|emb|CAC33780.1| SclB protein [Streptococcus pyogenes]
Length = 427
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+G+ GL G+DG G+ G DG+PG++G DG G+DGLPGKDG PG KT DT
Sbjct: 282 NGKDGLPGKDGKDGQNGKDGLPGKDGKDGQNGRDGLPGKDGQPGKPAPKTPEVPQKPDT 340
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 35/47 (74%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG G NG
Sbjct: 237 NGKDGLPGKDGKDGQDGQDGLPGKDGKDGQNGKDGLPGKDGKDGQNG 283
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 35/47 (74%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG G NG
Sbjct: 267 NGKDGLPGKDGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQNG 313
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 36/52 (69%), Gaps = 6/52 (11%)
Query: 29 GRIGLDGRDGLP------GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G DG+DGLP G+ G DG+PG++G DG GKDGLPGKDG G NG
Sbjct: 247 GKDGQDGQDGLPGKDGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQNG 298
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 34/46 (73%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG G NG
Sbjct: 193 GQDGLPGKDGKDGQDGQDGLPGKDGKDGQNGKDGLPGKDGKDGQNG 238
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 35/47 (74%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ GL G+DG G+ G DG+PG++G DG G+DGLPGKDG G NG
Sbjct: 222 NGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDGQDGLPGKDGKDGQNG 268
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 36/52 (69%), Gaps = 6/52 (11%)
Query: 29 GRIGLDGRDGLP------GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G DG+DGLP G+ G DG+PG++G DG GKDGLPGKDG G +G
Sbjct: 202 GKDGQDGQDGLPGKDGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDG 253
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKDGIPGTNG 74
+ G+ G DG+DG G PG DG G+NG DG+P GKDG GKDG+PG +G
Sbjct: 197 LPGKDGKDGQDGQDGLPGKDGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDG 247
>gi|423249842|ref|ZP_17230858.1| hypothetical protein HMPREF1066_01868 [Bacteroides fragilis
CL03T00C08]
gi|423255343|ref|ZP_17236272.1| hypothetical protein HMPREF1067_02916 [Bacteroides fragilis
CL03T12C07]
gi|392652343|gb|EIY46004.1| hypothetical protein HMPREF1067_02916 [Bacteroides fragilis
CL03T12C07]
gi|392655927|gb|EIY49569.1| hypothetical protein HMPREF1066_01868 [Bacteroides fragilis
CL03T00C08]
Length = 775
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 36/57 (63%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G+ G++G+DG G+ G++G G NG DGI GKDG GKDGI G +G A G D
Sbjct: 237 GKDGINGKDGANGKDGINGKDGANGKDGINGKDGANGKDGINGKDGAAGKDGANGKD 293
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ G++G+DG G+ G++G G NG DGI GKDG GKDG G +G
Sbjct: 248 NGKDGINGKDGANGKDGINGKDGANGKDGINGKDGAAGKDGANGKDG 294
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
I+G+ G +G+DG+ G+ G +G G NG DG GKDG+ GKDG G +G A G
Sbjct: 241 INGKDGANGKDGINGKDGANGKDGINGKDGANGKDGINGKDGAAGKDGANGKDGANG 297
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
G+DG+ G+ G +G G NG DG GKDG+ GKDG G +G A G D + DG
Sbjct: 237 GKDGINGKDGANGKDGINGKDGANGKDGINGKDGANGKDGINGKDGAAGKDGANGKDG 294
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK 66
+G+ G++G+DG G+ G++G G G DG GKDG GK
Sbjct: 260 NGKDGINGKDGANGKDGINGKDGAAGKDGANGKDGANGK 298
Score = 35.0 bits (79), Expect = 5.8, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 19 IGRAISTVISGR------IGLDGR--DGLPGEPGLDGIPGRN------GMDGIPGKDGLP 64
IG + VI+G+ IG DGR + + G G I G++ G DGI GKDG
Sbjct: 189 IGENGNWVINGKDTGKAAIGKDGRSPEVIIGTNGNWYINGKDTGIRAYGKDGINGKDGAN 248
Query: 65 GKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
GKDGI G +G G D + DG+
Sbjct: 249 GKDGINGKDGANGKDGINGKDGANGKDGI 277
>gi|13560496|gb|AAK30077.1|AF336811_1 collagen-like protein B [Streptococcus pyogenes]
Length = 326
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 37/47 (78%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ GL G+DG G+ G DG+PG++G DG+PGKDG GKDG+PG +G
Sbjct: 178 NGKDGLPGKDGKDGQDGKDGLPGKDGKDGLPGKDGQNGKDGLPGKDG 224
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHY 80
+ G+ G +G+DGLPG + G DG+PG++G DG GKDGLP GKDG+PG +G
Sbjct: 159 LPGKGGQNGKDGLPGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGLPGKDGQNGKDG 218
Query: 81 AMGADTKSFSDG 92
G D K DG
Sbjct: 219 LPGKDGKDGQDG 230
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 38/52 (73%), Gaps = 6/52 (11%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGR---NGMDGIP---GKDGLPGKDGIPGTNG 74
G+ G DG+DGLPG+ G DG+PG+ NG DG+P GKDG GKDG+PG +G
Sbjct: 188 GKDGQDGKDGLPGKDGKDGLPGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDG 239
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 34/47 (72%), Gaps = 6/47 (12%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ G DG+DGLPG+ G +NG DG+PGKDG GKDG+PG +G
Sbjct: 148 AGKDGQDGKDGLPGKGG------QNGKDGLPGKDGQNGKDGLPGKDG 188
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+G+ GL G+DG G+ G DG+PG++G DG+PGKD GKDG PG K +T
Sbjct: 214 NGKDGLPGKDGKDGQDGKDGLPGKDGKDGLPGKD---GKDGQPGKPAPKAPEVPQKPNT 269
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 34/48 (70%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G+ G +G+DGLPG+ G DG G++G+ G GKDGLPGKDG G G
Sbjct: 207 LPGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGLPGKDGKDGQPG 254
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMD---GIPGKDGLPGKDG 68
E R + G A +G +G G+DG G G G G++G D G+PGK G GKDG
Sbjct: 111 EQGQRGETGPAGPQGPAGPVGPAGKDGEAGAQGPVGPAGKDGQDGKDGLPGKGGQNGKDG 170
Query: 69 IPGTNGTKTDHYAMGADTKSFSDG 92
+PG +G G D K DG
Sbjct: 171 LPGKDGQNGKDGLPGKDGKDGQDG 194
>gi|422348408|ref|ZP_16429301.1| hypothetical protein HMPREF9465_00191 [Sutterella wadsworthensis
2_1_59BFAA]
gi|404659324|gb|EKB32176.1| hypothetical protein HMPREF9465_00191 [Sutterella wadsworthensis
2_1_59BFAA]
Length = 420
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 39/53 (73%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGM---DGIPGKDGLPGKDGIPGTNGTK 76
+ G+ G+DG+DG+ G G G+PG++G+ +G PGKDG PGKDG+PG +G +
Sbjct: 199 LPGKDGVDGKDGIDGARGEQGLPGKDGLPGAEGAPGKDGAPGKDGLPGRDGER 251
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
L+ G PG PG DG+ G++G+DG G+ GLPGKDG+PG G
Sbjct: 190 LESLVGEPGLPGKDGVDGKDGIDGARGEQGLPGKDGLPGAEG 231
>gi|343168808|ref|NP_001230226.1| collagen alpha-1(III) chain precursor [Sus scrofa]
Length = 1466
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A S I G G DG+DG PGEPG +G+PG G G+PG G PG +G+PG
Sbjct: 443 EPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERGMPGFRGAPGANGLPG 502
Query: 72 TNG 74
G
Sbjct: 503 EKG 505
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G G+PG G+ G G G NG K D A G
Sbjct: 228 AGKDGESGRPGRPGERGLPGPPGLKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPG 283
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR + G GL G G+PG PG+ G GRNG G G GL G++G+PG NG
Sbjct: 238 GRPGERGLPGPPGLKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGA 296
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 15/66 (22%)
Query: 29 GRIGLDGRDGLPGEPGLDG---------------IPGRNGMDGIPGKDGLPGKDGIPGTN 73
G G+ G +G PG GL+G G G DG PG DGLPG+DG PG+
Sbjct: 973 GPQGVKGENGKPGPSGLNGERGPPGPQGLPGLAGAAGEPGRDGNPGSDGLPGRDGAPGSK 1032
Query: 74 GTKTDH 79
G + ++
Sbjct: 1033 GDRGEN 1038
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 24/46 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G+ GL G PG G PG NG G PG G G GIPG G
Sbjct: 631 GDTGPPGQQGLQGLPGTSGPPGENGKPGEPGPKGEAGAPGIPGGKG 676
>gi|13560500|gb|AAK30078.1|AF336814_1 collagen-like protein B [Streptococcus pyogenes]
Length = 396
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G A +G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG G NG
Sbjct: 217 VGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQNGKDGL 276
Query: 79 HYAMGADTKSFSDGV 93
G D ++ DG+
Sbjct: 277 PGKDGKDGQNGKDGL 291
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI---PGTNGTKTDHYAMGA 84
+G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG PG KT
Sbjct: 286 NGKDGLPGKDGKDGQDGQDGLPGKDGKDGQDGKDGLPGKDGKDGQPGKPAPKTPEVPQKP 345
Query: 85 DT 86
DT
Sbjct: 346 DT 347
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 35/47 (74%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG G +G
Sbjct: 256 NGKDGLPGKDGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDG 302
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
R D G +G+ G +G+DGLPG+ G DG G++G+ G GKDG GKDG+PG +G
Sbjct: 208 RGDKGEQGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDG 266
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 9/56 (16%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---------DGIPGTNG 74
+G+ GL G+DG G+ G DG+PG++G DG GKDGLPGK DG+PG +G
Sbjct: 241 NGKDGLPGKDGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDG 296
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 6/52 (11%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G +G+DGLPG+ G DG+PG++G DG G+DGLPGKDG G +G
Sbjct: 266 GKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDGQDGLPGKDGKDGQDG 317
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
G +G G+DG + G DG+PG++G DG GKDGLPGKDG G NG G D +
Sbjct: 214 QGPVGPAGKDG---QNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQ 270
Query: 88 SFSDGV 93
+ DG+
Sbjct: 271 NGKDGL 276
>gi|83776774|gb|ABC46703.1| collagen-like protein [Streptococcus pyogenes]
Length = 433
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+R +G A +G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG G NG
Sbjct: 251 ERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQNG 310
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G +G G+DG + G DG+PG++G DG GKDGLPGKDG G NG G D ++
Sbjct: 253 GPVGPAGKDG---QNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQN 309
Query: 89 FSDGV 93
DG+
Sbjct: 310 GKDGL 314
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 13 VHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG---LPGKDGI 69
V R D G + G G DG+ G G G G G+NG DG+PGKDG GKDG+
Sbjct: 225 VGPRGDKGETGAKGEQGPAGKDGKAGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGL 284
Query: 70 PGTNGTKTDHYAMGADTKSFSDG 92
PG +G + G K DG
Sbjct: 285 PGKDGKDGQNGKDGLPGKDGKDG 307
>gi|156394129|ref|XP_001636679.1| predicted protein [Nematostella vectensis]
gi|156223784|gb|EDO44616.1| predicted protein [Nematostella vectensis]
Length = 62
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GR G G++GLPG GL G G G +G+PG++GLPG++G+PG G K
Sbjct: 1 GRAGFQGKEGLPGREGLPGREGLPGREGLPGREGLPGREGLPGREGFKEKW 51
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%), Gaps = 6/46 (13%)
Query: 27 ISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGI 69
G+ GL GR+GLPG PG +G+PGR +G+PG++GLPG++G
Sbjct: 5 FQGKEGLPGREGLPGREGLPGREGLPGR---EGLPGREGLPGREGF 47
>gi|374110562|sp|D8VNS9.1|FCNV3_CERRY RecName: Full=Ryncolin-3; Flags: Precursor
gi|299791448|gb|ADJ51064.1| ryncolin-3 [Cerberus rynchops]
Length = 347
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPGTNG 74
IS +I L G+ G+PG PG+ GI G G+ G PG GLPG+ DGIPG G
Sbjct: 43 ISDKIILQGQPGIPGIPGVPGINGSEGLKGDPGPQGLPGETGFDGIPGVAG 93
>gi|449662842|ref|XP_002153884.2| PREDICTED: collagen alpha-1(V) chain-like [Hydra magnipapillata]
Length = 688
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR G+DG++G PG PGL+G+PG G G PGKDG+PG G PG G
Sbjct: 279 GRNGIDGKNGSPGAPGLEGLPGLKGEPGQPGKDGIPGSIGPPGETG 324
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G IG G G G PG +G+PG G+ PG +GLPGKDGIPG G + D G
Sbjct: 105 GSIGQRGFPGAAGPPGSNGLPGEQGL---PGNNGLPGKDGIPGQPGKQGDKGQQG 156
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 29 GRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G+ GL+G+ DG G P +DG+PG G G+PG DG G+ G PG NG + + GA
Sbjct: 234 GQPGLNGKKGNDGPAGAPSIDGLPGSTGPQGLPGNDGEKGEKGSPGRNGIDGKNGSPGA 292
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---------PGKDGIPGTNG 74
ST G G DG G G PG +GI G+NG G PG +GL PGKDGIPG+ G
Sbjct: 259 STGPQGLPGNDGEKGEKGSPGRNGIDGKNGSPGAPGLEGLPGLKGEPGQPGKDGIPGSIG 318
Query: 75 TKTDHYAMG 83
+ MG
Sbjct: 319 PPGETGLMG 327
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G A + I G G G GLPG E G G PGRNG+DG G G PG +G+PG G
Sbjct: 246 GPAGAPSIDGLPGSTGPQGLPGNDGEKGEKGSPGRNGIDGKNGSPGAPGLEGLPGLKG 303
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
S + G GL G +GLPG+ G+ G PG+ G G G GLPG GI G G
Sbjct: 121 SNGLPGEQGLPGNNGLPGKDGIPGQPGKQGDKGQQGPPGLPGISGISGEKGN 172
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G +GLPGE PG +G+PG++G+ G PGK G G+ G PG G
Sbjct: 112 FPGAAGPPGSNGLPGEQGLPGNNGLPGKDGIPGQPGKQGDKGQQGPPGLPG 162
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 29 GRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G GLPG PG DGIPG+ G G G+ G PG GI G +G K
Sbjct: 120 GSNGLPGEQGLPGNNGLPGKDGIPGQPGKQGDKGQQGPPGLPGISGISGEK 170
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGM---------DGIPGKDGLPGKDGIPGTNG 74
+ G G DG G GEPGL G G+ G +G+PG+ GLPG +G+PG +G
Sbjct: 85 LPGTPGKDGEQGEQGEPGLIGSIGQRGFPGAAGPPGSNGLPGEQGLPGNNGLPGKDG 141
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 28 SGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGK---DGIPGTNGTKTDHYA 81
+G++G G GL GE PGL+G G +G G P DGLPG G+PG +G K + +
Sbjct: 218 AGKLGYKGEKGLTGEKGQPGLNGKKGNDGPAGAPSIDGLPGSTGPQGLPGNDGEKGEKGS 277
Query: 82 MGAD 85
G +
Sbjct: 278 PGRN 281
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD------GIPGTNGTKTDH 79
+ G GL G+DG+PG+PG G G+ G G+PG G+ G+ GI G +G K D
Sbjct: 130 LPGNNGLPGKDGIPGQPGKQGDKGQQGPPGLPGISGISGEKGNMGPPGIQGVSGEKGDK 188
>gi|383815340|ref|ZP_09970753.1| ImpA family type VI secretion-associated protein [Serratia sp.
M24T3]
gi|383295788|gb|EIC84109.1| ImpA family type VI secretion-associated protein [Serratia sp.
M24T3]
Length = 806
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 32/57 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G DG+DG G+ G +G G NG DG GKDG GKDG G +GT A G D
Sbjct: 722 GTDGKDGKDGANGKDGTNGKDGTNGKDGANGKDGTNGKDGTDGKDGTNGKDGANGKD 778
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 32/61 (52%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G DG DG G+ G +G G NG DG GKDG GKDG G +GT G D + D
Sbjct: 719 GKDGTDGKDGKDGANGKDGTNGKDGTNGKDGANGKDGTNGKDGTDGKDGTNGKDGANGKD 778
Query: 92 G 92
G
Sbjct: 779 G 779
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 35/65 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G+ G +G+DG G+ G +G G +G DG GKDG GKDG G G K D G D
Sbjct: 739 NGKDGTNGKDGANGKDGTNGKDGTDGKDGTNGKDGANGKDGAQGPKGDKGDTGQDGWDGF 798
Query: 88 SFSDG 92
DG
Sbjct: 799 DGFDG 803
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 31/55 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G+ G +G+DG G+ G +G G NG DG GKDG GKDG G +G A G
Sbjct: 728 GKDGANGKDGTNGKDGTNGKDGANGKDGTNGKDGTDGKDGTNGKDGANGKDGAQG 782
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G+ G +G+DG G+ G +G G NG DG GKDG GKDG G +G +
Sbjct: 733 NGKDGTNGKDGTNGKDGANGKDGTNGKDGTDGKDGTNGKDGANGKDGAQ 781
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 29/57 (50%)
Query: 36 RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
+DG G G DG G NG DG GKDG GKDG G +GT G D + DG
Sbjct: 717 KDGKDGTDGKDGKDGANGKDGTNGKDGTNGKDGANGKDGTNGKDGTDGKDGTNGKDG 773
>gi|126257022|gb|ABO09864.1| collagen-like protein 2 [Streptococcus pyogenes]
Length = 473
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+R +G A G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG G NG
Sbjct: 300 ERGPVGPAGKDGQDGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGQNG 359
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 37/59 (62%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG G KT DT
Sbjct: 328 NGKDGLPGKDGKDGQDGKDGLPGKDGKDGQNGKDGLPGKDGQDGKPAPKTPEVPQKPDT 386
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 28/40 (70%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK 66
+ G+ G DG+DG G PG DG G+NG DG+PGKDG GK
Sbjct: 333 LPGKDGKDGQDGKDGLPGKDGKDGQNGKDGLPGKDGQDGK 372
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G +G G+DG + G DG+PG++G DG GKDGLPGKDG G +G G D ++
Sbjct: 302 GPVGPAGKDG---QDGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGQN 358
Query: 89 FSDGV 93
DG+
Sbjct: 359 GKDGL 363
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 32/60 (53%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DR + G A G G G GLPG+ G G G G DG GKDGLPGKDG G NG
Sbjct: 270 DRGETGPAGPVGPRGDKGEKGEQGLPGKDGERGPVGPAGKDGQDGKDGLPGKDGKDGQNG 329
>gi|90415099|ref|ZP_01223055.1| hypothetical protein P3TCK_19850 [Photobacterium profundum 3TCK]
gi|90323774|gb|EAS40391.1| hypothetical protein P3TCK_19850 [Photobacterium profundum 3TCK]
Length = 632
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 37/65 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G G+DG+ G G+DGI G NG+DG G DG G +G+ GTNG + A GA +
Sbjct: 205 GDTGEAGKDGVDGTNGIDGINGTNGIDGTNGNDGRDGVNGLNGTNGKDGERGAKGAKGEQ 264
Query: 89 FSDGV 93
G+
Sbjct: 265 GLQGI 269
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 42/92 (45%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E D+ D G G G +G DG+ G G+DG G +G DG+ G +G GKDG G
Sbjct: 197 EKGDKGDKGDTGEAGKDGVDGTNGIDGINGTNGIDGTNGNDGRDGVNGLNGTNGKDGERG 256
Query: 72 TNGTKTDHYAMGADTKSFSDGVLPSVQRAIAA 103
G K + G K L V +I++
Sbjct: 257 AKGAKGEQGLQGIQGKDADPADLSPVLNSISS 288
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL------PGKDGIPGTNGTKTDHYAM 82
G G G G GE G DG+ G NG+DGI G +G+ G+DG+ G NGT
Sbjct: 196 GEKGDKGDKGDTGEAGKDGVDGTNGIDGINGTNGIDGTNGNDGRDGVNGLNGTNGKDGER 255
Query: 83 GA 84
GA
Sbjct: 256 GA 257
Score = 38.1 bits (87), Expect = 0.63, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 30/58 (51%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
G G G+ G G G++G+DG G DG+ G +GI GTNG G + + DG
Sbjct: 196 GEKGDKGDKGDTGEAGKDGVDGTNGIDGINGTNGIDGTNGNDGRDGVNGLNGTNGKDG 253
>gi|386362622|ref|YP_006071953.1| LPXTG-motif cell wall anchor domain protein [Streptococcus pyogenes
Alab49]
gi|350277031|gb|AEQ24399.1| LPXTG-motif cell wall anchor domain protein [Streptococcus pyogenes
Alab49]
Length = 501
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI---PG 71
+R +G A +G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG PG
Sbjct: 340 ERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGQPG 399
Query: 72 TNGTKTDHYAMGADTKSFS 90
KT DT +
Sbjct: 400 KPAPKTPEVPQKPDTAPHT 418
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 29/51 (56%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
T G G DG G G G DG G++G+ G GKDG GKDG+PG +G
Sbjct: 328 ETGPQGPAGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDG 378
>gi|167583674|ref|YP_001671864.1| agglutinating adhesin [Enterobacteria phage phiEco32]
gi|164375512|gb|ABY52920.1| agglutinating adhesin [Enterobacteria phage phiEco32]
Length = 265
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
I G+ G+DG+DG GE G G G+ G G+ G GL G DG+ G NG D A+ A+
Sbjct: 105 IDGKDGIDGKDGAQGEKGDSGADGKKGETGLTGAAGLNGVDGLNGKNGKDADMSAVNANA 164
Query: 87 KSF 89
KS
Sbjct: 165 KSI 167
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 21/38 (55%)
Query: 37 DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D GE G G G G +GI GKDG+ GKDG G G
Sbjct: 85 DWFKGEKGDQGEKGDTGANGIDGKDGIDGKDGAQGEKG 122
>gi|194222400|ref|XP_001917655.1| PREDICTED: collagen alpha-1(III) chain [Equus caballus]
Length = 1466
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP------GKDGLPG 65
E R + G A S I G G DG+DG PGEPG +G+PG G G P G +GLPG
Sbjct: 442 EPGARGERGEAGSPGIPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGLPG 501
Query: 66 KDGIPGTNGTKTDHYAMGADTKSFSDGV 93
+ G PG G+ GA + DGV
Sbjct: 502 EKGAPGDRGSPGPAGPRGAAGEPGRDGV 529
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G GIPG G+ G G G NG K + A G
Sbjct: 227 AGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPG 282
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 24/46 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G GL G GL G PG G PG NG G PG G G GIPG G
Sbjct: 630 GDAGLPGPQGLQGLPGTSGPPGENGKPGEPGPKGEAGSPGIPGGKG 675
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
GR G G G PG G +G+PG NG G G G P G+ G+PG G++ + A G
Sbjct: 268 FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGSRGNDGARG 327
Query: 84 AD 85
+D
Sbjct: 328 SD 329
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 28 SGRIGLDGRDGLPGEPGLDG---IPG------------RNGMDGIPGKDGLPGKDGIPGT 72
SGR G G GLPG PG+ G IPG RNG G G GL G++G+PG
Sbjct: 233 SGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGE 292
Query: 73 NGT 75
NG
Sbjct: 293 NGA 295
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 15/66 (22%)
Query: 29 GRIGLDGRDGLPGEPGLDG---------------IPGRNGMDGIPGKDGLPGKDGIPGTN 73
G G+ G G PG PG +G G G DG PG DGLPG+DG PG
Sbjct: 972 GPQGVKGESGKPGAPGHNGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGAPGGK 1031
Query: 74 GTKTDH 79
G + ++
Sbjct: 1032 GDRGEN 1037
>gi|417856962|ref|ZP_12502021.1| collagen-like surface protein [Streptococcus pyogenes HKU
QMH11M0907901]
gi|387933917|gb|EIK42030.1| collagen-like surface protein [Streptococcus pyogenes HKU
QMH11M0907901]
Length = 329
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 9/56 (16%)
Query: 28 SGRIGLDGRDGLPGE---------PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ G DG+DGLPG+ PG DG G++G DG+PGKDG GKDG+PG +G
Sbjct: 142 AGKDGQDGKDGLPGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGQNGKDGLPGKDG 197
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 38/52 (73%), Gaps = 6/52 (11%)
Query: 29 GRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNG 74
G+ G DG+DGLPG + G DG+PG++G DG GKDGLP GKDG+PG +G
Sbjct: 170 GKDGQDGKDGLPGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGLPGKDG 221
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI---PGTNGTKTDHYAMG 83
+ G+ G +G+DGLPG+ G DG G++G+ G GKDGLPGKDG PG KT
Sbjct: 180 LPGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGLPGKDGKDGQPGKPAPKTPEVPQK 239
Query: 84 ADT 86
DT
Sbjct: 240 PDT 242
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 6/53 (11%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGR---NGMDGIP---GKDGLPGKDGIPGTNG 74
+G+ GL G+DG G+ G DG+PG+ NG DG+P GKDG GKDG+PG +G
Sbjct: 160 NGKDGLPGKDGKDGQDGKDGLPGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDG 212
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 29/46 (63%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G DG G G G G G++G DG+PGKDG GKDG+PG +G
Sbjct: 125 GPAGKDGEAGAQGPVGPAGKDGQDGKDGLPGKDGQNGKDGLPGKDG 170
>gi|381337146|ref|YP_005174921.1| hypothetical protein MI1_07565 [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|356645112|gb|AET30955.1| hypothetical protein MI1_07565 [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 1181
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 37/48 (77%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G+DG++G+ G G +GI G+NG++GI G++G+ GKDG+ G NG
Sbjct: 708 IDGQNGVDGKNGVNGIDGQNGIDGKNGVNGIDGQNGVDGKDGVNGING 755
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 38/48 (79%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I+G+ G+DG+DG+ G G +G+ G+NG++GI G++G+ GK+G+ G NG
Sbjct: 753 INGQNGVDGKDGVNGIDGQNGVDGKNGVNGIDGQNGVDGKNGVNGING 800
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTKTDHYAMG 83
I G+ G+DG+DG+ G G +G+ G+NG++GI G++G+ GKD GI G NG + G
Sbjct: 903 IDGQNGVDGKDGVNGIDGQNGVDGKNGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNG 962
Query: 84 ADTKSFSDG 92
D ++ DG
Sbjct: 963 IDGQNGVDG 971
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 38/51 (74%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
I G+ G+DG+DG+ G G +G+ G+NG++GI G++G+ GKDG+ G +G +
Sbjct: 933 IDGQNGVDGKDGVNGIDGQNGVDGKNGVNGIDGQNGVDGKDGVNGIDGKNS 983
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 43/67 (64%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
I G+ G+DG+DG+ G G +G+ G++G++GI G++G+ GKDG+ G +G G +
Sbjct: 813 IDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVND 872
Query: 87 KSFSDGV 93
K +GV
Sbjct: 873 KDGQNGV 879
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 38/48 (79%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G+DG+DG+ G+ G +G+ G++G++GI G++G+ GKDG+ G +G
Sbjct: 648 IDGQNGVDGKDGVNGKDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDG 695
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTKTDHYAMGAD 85
G+ G+DG+DG+ G G +GI G+NG++GI G++G+ GKD GI G NG + G D
Sbjct: 875 GQNGVDGKDGVNGIDGQNGIDGKNGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGID 934
Query: 86 TKSFSDG 92
++ DG
Sbjct: 935 GQNGVDG 941
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G+DG++G+ G+ G++GI G+NG+DG G +G+ G++G+ G NG G D K +
Sbjct: 827 GIDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNDKDGQNGVDGKDGVN 886
Query: 92 GV 93
G+
Sbjct: 887 GI 888
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 38/48 (79%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I+G+ G+DG+DG+ G G +G+ G++G++GI G++G+ GKDG+ G +G
Sbjct: 798 INGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDG 845
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 37/48 (77%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G+DG+DG+ G G +G+ G+NG++GI G++G+ GK+G+ G +G
Sbjct: 693 IDGQNGVDGKDGVNGIDGQNGVDGKNGVNGIDGQNGIDGKNGVNGIDG 740
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 43/66 (65%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G+DG++G+ G+ G++GI G+NG+DG G +G+ G++G+ G NG G D K
Sbjct: 733 NGVNGIDGQNGVDGKDGVNGINGQNGVDGKDGVNGIDGQNGVDGKNGVNGIDGQNGVDGK 792
Query: 88 SFSDGV 93
+ +G+
Sbjct: 793 NGVNGI 798
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 37/48 (77%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G+DG++G+ G G +G+ G+NG++GI G++G+ GKDG+ G +G
Sbjct: 768 IDGQNGVDGKNGVNGIDGQNGVDGKNGVNGINGQNGVDGKDGVNGIDG 815
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G+DG++G+ G+ G++GI G+NG+DG G +G+ G++G+ G NG G D K +
Sbjct: 887 GIDGQNGIDGKNGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGIDGQNGVDGKDGVN 946
Query: 92 GV 93
G+
Sbjct: 947 GI 948
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 41/62 (66%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G+DG++G+ G+ G++GI G+NG+DG G +G+ G++G+ G NG G D K+ +
Sbjct: 677 GIDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGIDGQNGIDGKNGVN 736
Query: 92 GV 93
G+
Sbjct: 737 GI 738
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G+DG++G+ G+ G++GI G+NG+DG G +G+ G++G+ G NG G D K +
Sbjct: 917 GIDGQNGVDGKNGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGIDGQNGVDGKDGVN 976
Query: 92 GV 93
G+
Sbjct: 977 GI 978
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 6/65 (9%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G+ G+DG+DG+ G G +G+ G++G++GI G++G+ GKDG+ G +G G D K+
Sbjct: 665 GQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQN------GVDGKN 718
Query: 89 FSDGV 93
+G+
Sbjct: 719 GVNGI 723
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTKTDHYAMG 83
I G+ G+DG++G+ G G +G+ G++G++GI G++G+ GKD GI G NG + G
Sbjct: 723 IDGQNGIDGKNGVNGIDGQNGVDGKDGVNGINGQNGVDGKDGVNGIDGQNGVDGKNGVNG 782
Query: 84 ADTKSFSDG 92
D ++ DG
Sbjct: 783 IDGQNGVDG 791
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 37/48 (77%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G+DG+DG+ G G +G+ G++G++GI G++G+ GK+G+ G +G
Sbjct: 678 IDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGIDG 725
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 43/66 (65%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G+DG++G+ G+ G++GI G+NG+DG G +G+ G++G+ G +G G D K
Sbjct: 718 NGVNGIDGQNGIDGKNGVNGIDGQNGVDGKDGVNGINGQNGVDGKDGVNGIDGQNGVDGK 777
Query: 88 SFSDGV 93
+ +G+
Sbjct: 778 NGVNGI 783
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 43/66 (65%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G+DG++G+ G+ G++GI G+NG+DG G +G+ G++G+ G +G G D K
Sbjct: 898 NGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGIDGQNGVDGKDGVNGIDGQNGVDGK 957
Query: 88 SFSDGV 93
+ +G+
Sbjct: 958 NGVNGI 963
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 37/48 (77%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G+DG++G+ G G +G+ G++G++GI G++G+ GKDG+ G +G
Sbjct: 783 IDGQNGVDGKNGVNGINGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDG 830
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 35/48 (72%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G+DG+DG+ G G +G+ G+NG++ G++G+ GKDG+ G +G
Sbjct: 843 IDGQNGVDGKDGVNGIDGQNGVDGKNGVNDKDGQNGVDGKDGVNGIDG 890
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 35/48 (72%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G+ G DG+DG+ G G +G+ G++G++G G++G+ GKDG+ G +G
Sbjct: 633 VDGKNGQDGKDGVNGIDGQNGVDGKDGVNGKDGQNGVDGKDGVNGIDG 680
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
DG++G+ G+ G++GI G+NG+DG G +G+ G++G+ G +G G D K+ +G+
Sbjct: 874 DGQNGVDGKDGVNGIDGQNGIDGKNGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGI 933
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 36/65 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G+ G DG +G+ G+ G+DG G NG DG G DG G +GI G NG G D +
Sbjct: 637 NGQDGKDGVNGIDGQNGVDGKDGVNGKDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQ 696
Query: 88 SFSDG 92
+ DG
Sbjct: 697 NGVDG 701
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 27 ISGRIGLDGRDG---LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
I G+ G+DG+DG + G+ G+DG G NG+DG G DG G +GI G NG + G
Sbjct: 738 IDGQNGVDGKDGVNGINGQNGVDGKDGVNGIDGQNGVDGKNGVNGIDGQNGVDGKNGVNG 797
Query: 84 ADTKSFSDG 92
+ ++ DG
Sbjct: 798 INGQNGVDG 806
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G+DG++G+ G+ G++ G+NG+DG G +G+ G++GI G NG G D K +
Sbjct: 857 GIDGQNGVDGKNGVNDKDGQNGVDGKDGVNGIDGQNGIDGKNGVNGIDGQNGVDGKDGVN 916
Query: 92 GV 93
G+
Sbjct: 917 GI 918
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 27 ISGRIGLDGRDGL---PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
I G+ G+DG++G+ G+ G+DG G NG+DG G DG G +GI G NG G
Sbjct: 858 IDGQNGVDGKNGVNDKDGQNGVDGKDGVNGIDGQNGIDGKNGVNGIDGQNGVDGKDGVNG 917
Query: 84 ADTKSFSDG 92
D ++ DG
Sbjct: 918 IDGQNGVDG 926
Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G+ G++G DG G G DG+ G++G +G+ GKDG+ G DG G +G + G +
Sbjct: 641 GKDGVNGIDGQNGVDGKDGVNGKDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQNGVD 700
Query: 89 FSDGV 93
DGV
Sbjct: 701 GKDGV 705
Score = 42.0 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G+DG++G+ G+ G++GI G+NG+DG G + G++G+ G +G G D K+ +
Sbjct: 842 GIDGQNGVDGKDGVNGIDGQNGVDGKNGVNDKDGQNGVDGKDGVNGIDGQNGIDGKNGVN 901
Query: 92 GV 93
G+
Sbjct: 902 GI 903
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 27 ISGRIGLDGRDG---LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
I G+ G+DG++G + G+ G+DG G NG+DG G DG G +GI G NG G
Sbjct: 918 IDGQNGVDGKNGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGIDGQNGVDGKDGVNG 977
Query: 84 ADTKS 88
D K+
Sbjct: 978 IDGKN 982
Score = 41.6 bits (96), Expect = 0.053, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSF 89
+DG++G G+ G++GI G+NG+DG + GKDG G DG G NG + G D +
Sbjct: 633 VDGKNGQDGKDGVNGIDGQNGVDGKDGVNGKDGQNGVDGKDGVNGIDGQNGVDGKDGVNG 692
Query: 90 SDG 92
DG
Sbjct: 693 IDG 695
Score = 41.2 bits (95), Expect = 0.086, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G+ G++G DG G G +G+ G NG +G+ GKDG+ G DG G +G + G +
Sbjct: 774 VDGKNGVNGIDGQNGVDGKNGVNGINGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQNG 833
Query: 87 KSFSDGV 93
DGV
Sbjct: 834 VDGKDGV 840
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 27 ISGRIGLDGRDG---LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
I G+ G+DG+DG + G+ G+DG G NG+DG G DG G + G NG G
Sbjct: 828 IDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNDKDGQNGVDGKDGVNG 887
Query: 84 ADTKSFSDG 92
D ++ DG
Sbjct: 888 IDGQNGIDG 896
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G+DG++G+ G+ G++GI G+NG+DG + G DG + +N + A DTK
Sbjct: 947 GIDGQNGVDGKNGVNGIDGQNGVDGKDGVNGIDGKNSLNNQEASNSIEDKDVADSIDTKK 1006
Query: 89 FSD 91
D
Sbjct: 1007 GRD 1009
>gi|270299621|gb|ACZ68442.1| Dappu_323635-like protein [Daphnia pulex]
gi|270299623|gb|ACZ68443.1| Dappu_323635-like protein [Daphnia pulex]
gi|270299625|gb|ACZ68444.1| Dappu_323635-like protein [Daphnia pulex]
Length = 97
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 39/54 (72%), Gaps = 9/54 (16%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGK------DGIPGT 72
+G GL+GRDG+PGEPGLDG+PGR+G DGI G DGLPG+ DG PGT
Sbjct: 43 TGLPGLNGRDGVPGEPGLDGVPGRSGTPGFDGISGMDGLPGQAGHNGIDGNPGT 96
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDG 68
E +R G A G IG G G G+ G G+PG NG DG+PG+ DG+PG+ G
Sbjct: 9 ERGERGQQGEAGLRGPVGPIGPQGPKGPKGDMGKTGLPGLNGRDGVPGEPGLDGVPGRSG 68
Query: 69 IPGTNG 74
PG +G
Sbjct: 69 TPGFDG 74
>gi|345326301|ref|XP_003431029.1| PREDICTED: collagen alpha-1(III) chain [Ornithorhynchus anatinus]
Length = 1416
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
R + G A + G G +G+ G PGEPG++G+PG G G PG GLPG +GIPG G
Sbjct: 424 RGERGEAGTPGAPGSNGEEGKKGAPGEPGVNGVPGTPGDRGAPGFRGLPGSNGIPGEKGP 483
Query: 76 KTDHYAMGA 84
+ + GA
Sbjct: 484 AGERGSPGA 492
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 21/82 (25%)
Query: 29 GRIGLDGRDGLPGEPGL---DGIPGRNGMD------------------GIPGKDGLPGKD 67
G GL GR G PG+PG DG PG NG G PG+DG PG D
Sbjct: 938 GLPGLQGRQGTPGQPGARGEDGKPGVNGSPGERGPVGPPGPVGLSGTAGEPGRDGNPGSD 997
Query: 68 GIPGTNGTKTDHYAMGADTKSF 89
G PG +G+ + ++F
Sbjct: 998 GQPGRDGSPGGKSSPTPPQQAF 1019
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 33/65 (50%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G+ G G GL GE G G PG G +G GK G PG+ G+ G GT D A G
Sbjct: 413 GKNGAKGEPGLRGERGEAGTPGAPGSNGEEGKKGAPGEPGVNGVPGTPGDRGAPGFRGLP 472
Query: 89 FSDGV 93
S+G+
Sbjct: 473 GSNGI 477
>gi|423285948|ref|ZP_17264829.1| hypothetical protein HMPREF1204_04367 [Bacteroides fragilis HMW
615]
gi|404578632|gb|EKA83353.1| hypothetical protein HMPREF1204_04367 [Bacteroides fragilis HMW
615]
Length = 766
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ G++G+DG G+ G++G G NG DGI GKDG GKDG G +G
Sbjct: 242 NGKDGINGKDGANGKDGINGKNGANGKDGINGKDGAAGKDGANGKDG 288
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 31/51 (60%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G+DG G+ G++G G NG DGI GK+G GKDGI G +G A G D
Sbjct: 237 GKDGANGKDGINGKDGANGKDGINGKNGANGKDGINGKDGAAGKDGANGKD 287
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G+ G +G+DG+ G+ G +G G NG +G GKDG+ GKDG G +G A G
Sbjct: 237 GKDGANGKDGINGKDGANGKDGINGKNGANGKDGINGKDGAAGKDGANGKDGANG 291
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I+G+ G +G+DG+ G+ G +G G NG DG GKDG GKDG G +
Sbjct: 247 INGKDGANGKDGINGKNGANGKDGINGKDGAAGKDGANGKDGANGKSA 294
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 24/46 (52%)
Query: 47 GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
G G NG DGI GKDG GKDGI G NG G D + DG
Sbjct: 237 GKDGANGKDGINGKDGANGKDGINGKNGANGKDGINGKDGAAGKDG 282
>gi|116618837|ref|YP_819208.1| hypothetical protein LEUM_1748 [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116097684|gb|ABJ62835.1| hypothetical protein LEUM_1748 [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 1408
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
I G+ G+DG+DG+ G G +G+ G+NG++GI G++G+ GKDGI G +G G +
Sbjct: 940 IDGQNGVDGKDGVNGIDGQNGVDGKNGVNGINGQNGVDGKDGINGIDGQNGVDGKSGVNG 999
Query: 87 KSFSDGV 93
K +GV
Sbjct: 1000 KDGQNGV 1006
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
I G+ G+DG+DG+ G G +G+ G+NG++GI G++G+ GKDGI G +G G +
Sbjct: 1045 IDGQNGVDGKDGVNGIDGQNGVDGKNGVNGINGQNGVDGKDGINGIDGQNGVDGKSGVNG 1104
Query: 87 KSFSDGV 93
K +GV
Sbjct: 1105 KDGQNGV 1111
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDHYAMG 83
I G+ G+DG+DG+ G+ G +G+ G++GM+GI GKD G+ G++G+ G NG G
Sbjct: 871 IDGQNGVDGKDGVNGKDGQNGVDGKDGMNGIDGKDGVNGIDGQNGVDGKNGVNGIDGQNG 930
Query: 84 ADTKSFSDGV 93
D K+ +G+
Sbjct: 931 VDGKNGVNGI 940
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G+ G DG+DG+ G G +G+ G+NG++GI G++G+ GKDG+ G +G G +
Sbjct: 661 VDGKNGQDGKDGVNGIDGQNGVDGKNGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNG 720
Query: 87 KSFSDGV 93
K +GV
Sbjct: 721 KDGQNGV 727
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G+DG+DG+ G G +G+ G+NG++GI G++G+ GK+G+ G NG
Sbjct: 811 IDGQNGVDGKDGVNGIDGQNGVDGKNGVNGIDGQNGVDGKNGVNGING 858
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 38/48 (79%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G+DG++G+ G+ G +G+ G+NG++GI G++G+ GKDG+ G +G
Sbjct: 751 IDGQNGVDGKNGVNGKDGQNGVDGKNGVNGIDGQNGVDGKDGVNGIDG 798
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 44/67 (65%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
I G+ G+DG++G+ G+ G +G+ G++G++GI G++G+ GKDG+ G +G G +
Sbjct: 706 IDGQNGVDGKNGVNGKDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNG 765
Query: 87 KSFSDGV 93
K +GV
Sbjct: 766 KDGQNGV 772
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 43/67 (64%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
I G+ G+DG++G+ G G +G+ G+NG++GI G++G+ GKDG+ G +G G +
Sbjct: 826 IDGQNGVDGKNGVNGIDGQNGVDGKNGVNGINGQNGVDGKDGVNGIDGQNGVDGKDGVNG 885
Query: 87 KSFSDGV 93
K +GV
Sbjct: 886 KDGQNGV 892
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 37/48 (77%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G+DG+ G+ G+ G +G+ G+NG++GI G++G+ GKDG+ G +G
Sbjct: 1090 IDGQNGVDGKSGVNGKDGQNGVDGKNGVNGIDGQNGVDGKDGVNGKDG 1137
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 37/48 (77%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G+DG+ G+ G+ G +G+ G+NG++GI G++G+ GKDG+ G +G
Sbjct: 1015 IDGQNGVDGKSGVNGKDGQNGVDGKNGVNGIDGQNGVDGKDGVNGIDG 1062
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G+DG++G+ G+ G++GI G+NG+DG G +G+ G++G+ G NG G D K +
Sbjct: 675 GIDGQNGVDGKNGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGKDGQNGVDGKDGVN 734
Query: 92 GV 93
G+
Sbjct: 735 GI 736
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTKTDHYAMG 83
I G+ G+DG+DG+ G G +G+ G++G++GI G++G+ GKD GI G NG + G
Sbjct: 781 IDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNG 840
Query: 84 ADTKSFSDG 92
D ++ DG
Sbjct: 841 IDGQNGVDG 849
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 37/48 (77%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G+DG++G+ G G +G+ G+NG++GI G++G+ GKDG+ G +G
Sbjct: 910 IDGQNGVDGKNGVNGIDGQNGVDGKNGVNGIDGQNGVDGKDGVNGIDG 957
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 43/66 (65%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G+DG++G+ G+ G++GI G+NG+DG G +G+ G++G+ G NG + G D K
Sbjct: 920 NGVNGIDGQNGVDGKNGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGINGQNGVDGK 979
Query: 88 SFSDGV 93
+G+
Sbjct: 980 DGINGI 985
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 41/62 (66%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G+DG++G+ G+ G++GI G+NG+DG G +G+ G++G+ G NG G D K+ +
Sbjct: 795 GIDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGIDGQNGVDGKNGVN 854
Query: 92 GV 93
G+
Sbjct: 855 GI 856
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
SG G DG++G+ G+ G++GI G+NG+DG G +G+ G++G+ G NG + G D K
Sbjct: 1025 SGVNGKDGQNGVDGKNGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGINGQNGVDGK 1084
Query: 88 SFSDGV 93
+G+
Sbjct: 1085 DGINGI 1090
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 44/67 (65%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
I G+ G+DG+DG+ G+ G +G+ G++G++GI G++G+ GK+G+ G +G + G +
Sbjct: 1120 IDGQNGVDGKDGVNGKDGQNGVDGKDGVNGINGQNGVDGKNGMNGIDGKNGVNGIDGQNG 1179
Query: 87 KSFSDGV 93
DGV
Sbjct: 1180 VDGKDGV 1186
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 42/66 (63%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G DG++G+ G+ G++GI G+NG+DG G +G+ G++G+ G NG G D K
Sbjct: 716 NGVNGKDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGKDGQNGVDGK 775
Query: 88 SFSDGV 93
+ +G+
Sbjct: 776 NGVNGI 781
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 36/48 (75%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G+DG+DG+ G G +G+ G+NG++G G++G+ GKDG+ G +G
Sbjct: 691 IDGQNGVDGKDGVNGIDGQNGVDGKNGVNGKDGQNGVDGKDGVNGIDG 738
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G+DG++G+ G+ G++GI G+NG+DG G +G+ G++G+ G +G G D K
Sbjct: 836 NGVNGIDGQNGVDGKNGVNGINGQNGVDGKDGVNGIDGQNGVDGKDGVNGKDGQNGVDGK 895
Query: 88 SFSDGV 93
+G+
Sbjct: 896 DGMNGI 901
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G+ G++G+DG G G DG+ G NG +G+ GK+G+ G DG G NG + G D
Sbjct: 1126 VDGKDGVNGKDGQNGVDGKDGVNGINGQNGVDGKNGMNGIDGKNGVNGIDGQNGVDGKDG 1185
Query: 87 KSFSDG 92
+ DG
Sbjct: 1186 VNGKDG 1191
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 36/48 (75%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G+DG+ G+ G+ G +G+ G+NG++GI G++G+ GK G+ G +G
Sbjct: 985 IDGQNGVDGKSGVNGKDGQNGVDGKNGVNGIDGQNGVDGKSGVNGKDG 1032
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 43/66 (65%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G+DG++G+ G+ G++GI G+NG+DG G +G+ G++G+ G +G G D K
Sbjct: 776 NGVNGIDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQNGVDGK 835
Query: 88 SFSDGV 93
+ +G+
Sbjct: 836 NGVNGI 841
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 41/62 (66%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G+DG++G+ G+ G++GI G+NG+DG G +G+ G++G+ G +G G D K+ +
Sbjct: 954 GIDGQNGVDGKNGVNGINGQNGVDGKDGINGIDGQNGVDGKSGVNGKDGQNGVDGKNGVN 1013
Query: 92 GV 93
G+
Sbjct: 1014 GI 1015
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 41/62 (66%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G+DG++G+ G+ G++GI G+NG+DG G +G+ G++G+ G +G G D K+ +
Sbjct: 1059 GIDGQNGVDGKNGVNGINGQNGVDGKDGINGIDGQNGVDGKSGVNGKDGQNGVDGKNGVN 1118
Query: 92 GV 93
G+
Sbjct: 1119 GI 1120
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 42/65 (64%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G+DG++G+ G+ G++GI G+NG+DG G +G+ G++G+ G +G G D K
Sbjct: 935 NGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGINGQNGVDGKDGINGIDGQNGVDGK 994
Query: 88 SFSDG 92
S +G
Sbjct: 995 SGVNG 999
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 42/65 (64%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G+DG++G+ G+ G++GI G+NG+DG G +G+ G++G+ G +G G D K
Sbjct: 1040 NGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGINGQNGVDGKDGINGIDGQNGVDGK 1099
Query: 88 SFSDG 92
S +G
Sbjct: 1100 SGVNG 1104
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
SG G DG++G+ G+ G++GI G+NG+DG G +G G++G+ G NG G D K
Sbjct: 995 SGVNGKDGQNGVDGKNGVNGIDGQNGVDGKSGVNGKDGQNGVDGKNGVNGIDGQNGVDGK 1054
Query: 88 SFSDGV 93
+G+
Sbjct: 1055 DGVNGI 1060
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 43/67 (64%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
I+G+ G+DG+DG+ G G +G+ G++G++G G++G+ GK+G+ G +G G +
Sbjct: 970 INGQNGVDGKDGINGIDGQNGVDGKSGVNGKDGQNGVDGKNGVNGIDGQNGVDGKSGVNG 1029
Query: 87 KSFSDGV 93
K +GV
Sbjct: 1030 KDGQNGV 1036
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G+DG++G+ G+ G++GI G+NG+DG G +G G++G+ G NG G D K +
Sbjct: 735 GIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGKDGQNGVDGKNGVNGIDGQNGVDGKDGVN 794
Query: 92 GV 93
G+
Sbjct: 795 GI 796
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G+ G+DG+DG+ G G +G+ G+NGM+GI GK+G+ +GI G NG G D ++
Sbjct: 1137 GQNGVDGKDGVNGINGQNGVDGKNGMNGIDGKNGV---NGIDGQNGVDGKDGVNGKDGQN 1193
Query: 89 FSDG 92
DG
Sbjct: 1194 GVDG 1197
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G++G++G+ G+ G++GI G+NG+DG G +G G++G+ G NG G D K
Sbjct: 965 NGVNGINGQNGVDGKDGINGIDGQNGVDGKSGVNGKDGQNGVDGKNGVNGIDGQNGVDGK 1024
Query: 88 SFSDG 92
S +G
Sbjct: 1025 SGVNG 1029
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G DG +G+ G+ G++GI G+NG+DG G +G+ G++G+ G NG G D K
Sbjct: 890 NGVDGKDGMNGIDGKDGVNGIDGQNGVDGKNGVNGIDGQNGVDGKNGVNGIDGQNGVDGK 949
Query: 88 SFSDGV 93
+G+
Sbjct: 950 DGVNGI 955
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 43/67 (64%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
I+G+ G+DG+DG+ G G +G+ G++G++G G++G+ GK+G+ G +G G +
Sbjct: 1075 INGQNGVDGKDGINGIDGQNGVDGKSGVNGKDGQNGVDGKNGVNGIDGQNGVDGKDGVNG 1134
Query: 87 KSFSDGV 93
K +GV
Sbjct: 1135 KDGQNGV 1141
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 42/66 (63%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
SG G DG++G+ G+ G++GI G+NG+DG G +G G++G+ G +G + G D K
Sbjct: 1100 SGVNGKDGQNGVDGKNGVNGIDGQNGVDGKDGVNGKDGQNGVDGKDGVNGINGQNGVDGK 1159
Query: 88 SFSDGV 93
+ +G+
Sbjct: 1160 NGMNGI 1165
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 36/51 (70%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
I+G+ G+DG++G+ G G +G+ G +G +G+ GKDG+ GKDG G +G +
Sbjct: 1150 INGQNGVDGKNGMNGIDGKNGVNGIDGQNGVDGKDGVNGKDGQNGVDGKNS 1200
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 38/65 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G+ G DG +G+ G+ G+DG G NG+DG G DG G +GI G NG + G D +
Sbjct: 665 NGQDGKDGVNGIDGQNGVDGKNGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGKDGQ 724
Query: 88 SFSDG 92
+ DG
Sbjct: 725 NGVDG 729
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G+ G++G DG G G DG+ G++G +G+ GKDG+ G DG G NG + G D
Sbjct: 862 VDGKDGVNGIDGQNGVDGKDGVNGKDGQNGVDGKDGMNGIDGKDGVNGIDGQN---GVDG 918
Query: 87 KSFSDGV 93
K+ +G+
Sbjct: 919 KNGVNGI 925
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G+DG++G+ G+ G++GI G+NG+DG G +G G++G+ G +G G D K
Sbjct: 686 NGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGKDGQNGVDGKDGVNGIDGQNGVDGK 745
Query: 88 SFSDGV 93
+G+
Sbjct: 746 DGVNGI 751
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G DG++G+ G+ G++GI G+NG+DG G +G+ G++G+ G +G G D K
Sbjct: 761 NGVNGKDGQNGVDGKNGVNGIDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQNGVDGK 820
Query: 88 SFSDGV 93
+G+
Sbjct: 821 DGVNGI 826
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 39/61 (63%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G+DG++G+ G+ G++GI G+NG+DG G +G+ G++G+ G +G G D K +
Sbjct: 825 GIDGQNGVDGKNGVNGIDGQNGVDGKNGVNGINGQNGVDGKDGVNGIDGQNGVDGKDGVN 884
Query: 92 G 92
G
Sbjct: 885 G 885
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G DG++G+ G+ G++GI G+NG+DG G +G+ GK+G+ G +G G + K +
Sbjct: 1134 GKDGQNGVDGKDGVNGINGQNGVDGKNGMNGIDGKNGVNGIDGQNGVDGKDGVNGKDGQN 1193
Query: 92 GV 93
GV
Sbjct: 1194 GV 1195
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G++G++G+ G+ G++GI G+NG+DG G +G G++G+ G NG G D K
Sbjct: 1070 NGVNGINGQNGVDGKDGINGIDGQNGVDGKSGVNGKDGQNGVDGKNGVNGIDGQNGVDGK 1129
Query: 88 SFSDG 92
+G
Sbjct: 1130 DGVNG 1134
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
++G+ G +G DG G G+DG G NG+DG G DG G +GI G NG + G D
Sbjct: 883 VNGKDGQNGVDGKDGMNGIDGKDGVNGIDGQNGVDGKNGVNGIDGQNGVDGKNGVNGIDG 942
Query: 87 KSFSDG 92
++ DG
Sbjct: 943 QNGVDG 948
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
+G G++G++G+ G+ G++GI G+NG+DG + GKDG G DG G NG G
Sbjct: 851 NGVNGINGQNGVDGKDGVNGIDGQNGVDGKDGVNGKDGQNGVDGKDGMNGIDGKDGVNGI 910
Query: 85 DTKSFSDG 92
D ++ DG
Sbjct: 911 DGQNGVDG 918
Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 27 ISGRIGLDGRDG---LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
I G+ G+DG+DG + G+ G+DG G NG+DG G DG G +GI G NG + G
Sbjct: 796 IDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGIDGQNGVDGKNGVNG 855
Query: 84 ADTKSFSDG 92
+ ++ DG
Sbjct: 856 INGQNGVDG 864
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
++G G DG +G+ G+ G+DG G NG+DG G DG G +GI G NG G D
Sbjct: 898 MNGIDGKDGVNGIDGQNGVDGKNGVNGIDGQNGVDGKNGVNGIDGQNGVDGKDGVNGIDG 957
Query: 87 KSFSDG 92
++ DG
Sbjct: 958 QNGVDG 963
Score = 41.6 bits (96), Expect = 0.055, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G+DG++G+ G+ G++G G+NG+DG G +G+ G++G+ G +G G D K+ +
Sbjct: 705 GIDGQNGVDGKNGVNGKDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVN 764
Query: 92 G 92
G
Sbjct: 765 G 765
Score = 41.2 bits (95), Expect = 0.085, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G+ G++G DG G G DG+ G++G +G+ GKDG+ +GI G NG + G D
Sbjct: 1111 VDGKNGVNGIDGQNGVDGKDGVNGKDGQNGVDGKDGV---NGINGQNGVDGKNGMNGIDG 1167
Query: 87 KSFSDGV 93
K+ +G+
Sbjct: 1168 KNGVNGI 1174
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G+ G++G DG G G DG+ G +G +G+ GK+G+ GKDG G +G + G +
Sbjct: 682 VDGKNGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGKDGQNGVDGKDGVNGIDGQNG 741
Query: 87 KSFSDGV 93
DGV
Sbjct: 742 VDGKDGV 748
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G +G +G+ G+ G+DG G NG+DG G DG G +GI G NG G D +
Sbjct: 770 NGVDGKNGVNGIDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQNGVDGKDGVNGIDGQ 829
Query: 88 SFSDG 92
+ DG
Sbjct: 830 NGVDG 834
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G DG +G+ G+ G+DG G NG+DG G DG G +G G NG + G D +
Sbjct: 725 NGVDGKDGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGKDGQNGVDGKNGVNGIDGQ 784
Query: 88 SFSDG 92
+ DG
Sbjct: 785 NGVDG 789
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 27 ISGRIGLDGRDG---LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
I G+ G+DG++G + G+ G+DG G NG+DG G DG G +G G NG + G
Sbjct: 955 IDGQNGVDGKNGVNGINGQNGVDGKDGINGIDGQNGVDGKSGVNGKDGQNGVDGKNGVNG 1014
Query: 84 ADTKSFSDG 92
D ++ DG
Sbjct: 1015 IDGQNGVDG 1023
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 27 ISGRIGLDGRDG---LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
I G+ G+DG++G + G+ G+DG G NG+DG G DG G +G G NG + G
Sbjct: 1060 IDGQNGVDGKNGVNGINGQNGVDGKDGINGIDGQNGVDGKSGVNGKDGQNGVDGKNGVNG 1119
Query: 84 ADTKSFSDG 92
D ++ DG
Sbjct: 1120 IDGQNGVDG 1128
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G +G +G+ G+ G+DG G NG+DG G DG G +GI G NG G D +
Sbjct: 1034 NGVDGKNGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGINGQNGVDGKDGINGIDGQ 1093
Query: 88 SFSDG 92
+ DG
Sbjct: 1094 NGVDG 1098
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 35/65 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G +G +G+ G+ G+DG G NG DG G DG G +GI G NG G D +
Sbjct: 1004 NGVDGKNGVNGIDGQNGVDGKSGVNGKDGQNGVDGKNGVNGIDGQNGVDGKDGVNGIDGQ 1063
Query: 88 SFSDG 92
+ DG
Sbjct: 1064 NGVDG 1068
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G+ G++G +G G G DGI G +G +G+ GK G+ GKDG G +G + G +
Sbjct: 1066 VDGKNGVNGINGQNGVDGKDGINGIDGQNGVDGKSGVNGKDGQNGVDGKNGVNGIDGQNG 1125
Query: 87 KSFSDGV 93
DGV
Sbjct: 1126 VDGKDGV 1132
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 27 ISGRIGLDGRDG---LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
I G+ G+DG++G + G+ G+DG G NG+DG G DG G +G G NG G
Sbjct: 676 IDGQNGVDGKNGVNGIDGQNGVDGKDGVNGIDGQNGVDGKNGVNGKDGQNGVDGKDGVNG 735
Query: 84 ADTKSFSDG 92
D ++ DG
Sbjct: 736 IDGQNGVDG 744
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 27 ISGRIGLDGRDG---LPGEPGLDGIPGRNGMD---GIPGKDGLPGKDGIPGTNGTKTDHY 80
I G+ G+DG++G + G+ G+DG G NG+D G+ GKDG+ GKDG G +G +
Sbjct: 841 IDGQNGVDGKNGVNGINGQNGVDGKDGVNGIDGQNGVDGKDGVNGKDGQNGVDGKDGMNG 900
Query: 81 AMGADTKSFSDG 92
G D + DG
Sbjct: 901 IDGKDGVNGIDG 912
>gi|13235588|emb|CAC33777.1| SclB protein [Streptococcus pyogenes]
Length = 399
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI---PGTNGTKTDHYAMGA 84
+G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG PG KT
Sbjct: 251 NGKDGLPGKDGKDGQDGQDGLPGKDGKDGQDGKDGLPGKDGKDGQPGKPAPKTPEVPQKP 310
Query: 85 DT 86
DT
Sbjct: 311 DT 312
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 38/56 (67%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G A +G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG G +G
Sbjct: 212 VGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDG 267
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
R D G +G+ G +G+DGLPG+ G DG G++G+ G GKDG GKDG+PG +G
Sbjct: 203 RGDKGEQGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDG 261
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 6/52 (11%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G +G+DGLPG+ G DG+PG++G DG G+DGLPGKDG G +G
Sbjct: 231 GKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDGQDGLPGKDGKDGQDG 282
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 26/48 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G G G G+ G G G G DG GKDGLPGKDG G NG
Sbjct: 190 AKGEVGPQGPQGPRGDKGEQGPVGPAGKDGQNGKDGLPGKDGKDGQNG 237
>gi|209559362|ref|YP_002285834.1| SclB protein [Streptococcus pyogenes NZ131]
gi|209540563|gb|ACI61139.1| SclB protein [Streptococcus pyogenes NZ131]
Length = 365
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 40/60 (66%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+R +G A +G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG G +G
Sbjct: 174 ERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGQDG 233
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 39/67 (58%), Gaps = 9/67 (13%)
Query: 29 GRIGLDGRDGLPG------EPGLDGIPGRNGMDGIPGKDGLPGKDGI---PGTNGTKTDH 79
G+ G DG+DGLPG + G DG+PG++G DG GKDGLPGKDG PG KT
Sbjct: 212 GKDGQDGKDGLPGKDGKDGQDGKDGLPGKDGKDGQDGKDGLPGKDGKDGQPGKPAPKTPE 271
Query: 80 YAMGADT 86
DT
Sbjct: 272 VPQKPDT 278
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 35/52 (67%), Gaps = 6/52 (11%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGM---DGI---PGKDGLPGKDGIPGTNG 74
G+ G +G+DGLPG+ G DG G++G+ DG GKDGLPGKDG G +G
Sbjct: 197 GKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGQDGKDGLPGKDGKDGQDG 248
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKDGIPGTNG 74
G G G+DG G G G G+NG DG+P GKDG GKDG+PG +G
Sbjct: 163 KGEQGPAGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDG 212
>gi|336409540|ref|ZP_08590022.1| hypothetical protein HMPREF1018_02038 [Bacteroides sp. 2_1_56FAA]
gi|383118151|ref|ZP_09938894.1| hypothetical protein BSHG_3849 [Bacteroides sp. 3_2_5]
gi|335945921|gb|EGN07727.1| hypothetical protein HMPREF1018_02038 [Bacteroides sp. 2_1_56FAA]
gi|382973537|gb|EES84929.2| hypothetical protein BSHG_3849 [Bacteroides sp. 3_2_5]
Length = 763
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G++G+DG G+ G++G G NG DGI GKDG GKDG G +G
Sbjct: 237 GKDGINGKDGANGKDGINGKDGANGKDGINGKDGAAGKDGANGKDG 282
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I+G+ G +G+DG+ G+ G +G G NG DG GKDG GKDG G +
Sbjct: 241 INGKDGANGKDGINGKDGANGKDGINGKDGAAGKDGANGKDGANGKSA 288
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G+DG+ G+ G +G G NG DG GKDG+ GKDG G +G A G
Sbjct: 237 GKDGINGKDGANGKDGINGKDGANGKDGINGKDGAAGKDGANGKDGANG 285
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 27/45 (60%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G+ G++G G NG DGI GKDG GKDGI G +G A G D
Sbjct: 237 GKDGINGKDGANGKDGINGKDGANGKDGINGKDGAAGKDGANGKD 281
>gi|354506837|ref|XP_003515466.1| PREDICTED: collagen alpha-1(III) chain-like isoform 1 [Cricetulus
griseus]
gi|354506839|ref|XP_003515467.1| PREDICTED: collagen alpha-1(III) chain-like isoform 2 [Cricetulus
griseus]
Length = 1466
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 39/72 (54%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A S I G G DG+DG PGEPG +G+PG G G PG G G +GIPG
Sbjct: 444 EPGARGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGTAGERGAPGFRGPAGPNGIPG 503
Query: 72 TNGTKTDHYAMG 83
G + A G
Sbjct: 504 EKGPAGERGAPG 515
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G G+PG G+ G G G NG K + A G
Sbjct: 229 AGKDGESGRPGRPGERGLPGPPGIKGPSGMPGFPGMKGHRGFDGRNGEKGETGAPG 284
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR + G G+ G G+PG PG+ G GRNG G G GL G++G+PG NG
Sbjct: 239 GRPGERGLPGPPGIKGPSGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGDNGA 297
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 28 SGRIGLDGRDGLPG------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
SG G +G G PG E G GIPG G DG G G PG +G+PGT G +
Sbjct: 433 SGEPGKNGAKGEPGARGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGTAGER 487
>gi|321473206|gb|EFX84174.1| hypothetical protein DAPPUDRAFT_223152 [Daphnia pulex]
Length = 708
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 36 RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+DG PG+PG G PG +G G PG+ G+PG G PGT+ T
Sbjct: 570 QDGEPGDPGTPGRPGNDGKRGSPGEPGIPGIPGSPGTSST 609
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 36 RDGLPG-------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
+DG PG EPG G PGR G DG G G PG GIPG+ GT +
Sbjct: 560 KDGAPGTCSCQDGEPGDPGTPGRPGNDGKRGSPGEPGIPGIPGSPGTSS 608
>gi|345493584|ref|XP_003427100.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(IV) chain [Nasonia
vitripennis]
Length = 1880
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 38/59 (64%), Gaps = 6/59 (10%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDH 79
I G GLDGRDGLPG PG G PG G+DG+PG GLP GKDGIPG+ G + +
Sbjct: 675 IKGDRGLDGRDGLPGARGPPGERGFPGEPGLDGLPGPIGLPGARGKDGIPGSPGPQGEQ 733
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 43/102 (42%), Gaps = 26/102 (25%)
Query: 3 RVQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGE------------PGLDGIPG 50
+ Q L+ + +R D GR T G IG GR G PG PGLDGIPG
Sbjct: 741 KDQFKLEKGQKGERGDEGRPGPTGPEGPIGEKGRAGSPGFPGTKGDTGERGLPGLDGIPG 800
Query: 51 RNGMDGIP--------------GKDGLPGKDGIPGTNGTKTD 78
R G G G+DG PG+ G PG G K +
Sbjct: 801 RPGFSGQKGEAGLSIKGEQGDRGRDGYPGQKGEPGYTGLKGE 842
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGR---NGMDGIPGKDGLPGKD---GIPGTNGTKTDHY 80
+ G G +G G+PG G G+PGR NG DG PG GLPG+ G+PGT G K D
Sbjct: 227 LPGHAGQNGVPGIPGAAGPPGMPGRDGCNGTDGAPGLHGLPGEPGPRGLPGTLGDKGDKG 286
Query: 81 AMG 83
G
Sbjct: 287 EAG 289
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G G DGL GEPGL G PGR G+ G+P G+ G G+PG +G K
Sbjct: 1025 MGTPGTDGLKGEPGLPGEPGRTGLPGLP---GVKGDMGVPGIDGAK 1067
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 15/73 (20%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPG------------EPGLDGIPGRNGMDGIPGKDGL 63
+ D+G T + GR G G DG+PG PGL G PG+ G G+ G+DGL
Sbjct: 1447 KGDMGLPGPTGLPGRDGPSGLDGIPGAIGDKGDKGDQGPPGLFGAPGQKGEPGLSGRDGL 1506
Query: 64 PGKDGIPGTNGTK 76
P GIPG G +
Sbjct: 1507 P---GIPGEKGDR 1516
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPG------LDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
GR T G GL GRDG+PG G L G+PG+ G G PG G PG G+ G
Sbjct: 1198 YGRDGPTGDKGEPGLPGRDGIPGPKGDRGDVGLSGLPGQKGDIGFPGPVGEPGIPGLDGI 1257
Query: 73 NGTKTD 78
+G K D
Sbjct: 1258 DGMKGD 1263
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 29 GRIGLDG---RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G++GL G ++G+PG PG G PG G DG G DG PG G+PG G +
Sbjct: 223 GKMGLPGHAGQNGVPGIPGAAGPPGMPGRDGCNGTDGAPGLHGLPGEPGPR 273
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 15/88 (17%)
Query: 21 RAISTV-ISGRIGLDGRDGLPGEPG--------------LDGIPGRNGMDGIPGKDGLPG 65
+ +S V +G G++GRDG G+ G L+GIPG G G+PG+ G+PG
Sbjct: 585 KGLSIVGPAGMDGINGRDGAKGQKGEKGYGGSRGRPGDSLEGIPGAPGAPGLPGEAGVPG 644
Query: 66 KDGIPGTNGTKTDHYAMGADTKSFSDGV 93
+DG PG G + +G G+
Sbjct: 645 RDGAPGFPGLPGEKGDIGGRCTQCLPGI 672
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 29/54 (53%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
DR D+G + G IG G G PG PGLDGI G G G PG G PG DG
Sbjct: 1224 DRGDVGLSGLPGQKGDIGFPGPVGEPGIPGLDGIDGMKGDVGPPGMAGFPGLDG 1277
>gi|198417199|ref|XP_002122571.1| PREDICTED: similar to MGC81791 protein, partial [Ciona
intestinalis]
Length = 847
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 32/50 (64%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G DG G PGEPG+ G G NG+DG+ G DG PG DG PG G+K
Sbjct: 736 LKGSTGSDGEPGRPGEPGVKGQKGDNGVDGLNGNDGTPGSDGEPGDVGSK 785
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 35/75 (46%), Gaps = 24/75 (32%)
Query: 29 GRIGLDGRDGLPGEPGLDG------------IPGRNGMDGIPGK------------DGLP 64
GR G GRDG PGE G DG IPG G+ GIPGK DG P
Sbjct: 687 GRAGNQGRDGAPGEDGKDGAKGAKGEVGGQGIPGERGVTGIPGKNGGQGLKGSTGSDGEP 746
Query: 65 GKDGIPGTNGTKTDH 79
G+ G PG G K D+
Sbjct: 747 GRPGEPGVKGQKGDN 761
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGI---PGKDGLPGKDGIPGTNGT 75
G G G+PG+ G G+PG +G++G+ PG G+PGKDG PG G
Sbjct: 572 GSKGEPGVPGDKGERGLPGNDGVEGVKGEPGAGGIPGKDGSPGVPGN 618
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G GLPG G++G+ G G GIPGKDG PG G G G+K
Sbjct: 581 GDKGERGLPGNDGVEGVKGEPGAGGIPGKDGSPGVPGNHGNQGSK 625
>gi|423254908|ref|ZP_17235838.1| hypothetical protein HMPREF1067_02482 [Bacteroides fragilis
CL03T12C07]
gi|392653474|gb|EIY47130.1| hypothetical protein HMPREF1067_02482 [Bacteroides fragilis
CL03T12C07]
Length = 673
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 20 GRAISTVISGRI----GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G IS SG I G G DG GE G DG G+NG DG G+DG GKDG GT+G
Sbjct: 78 GYTISFFKSGTIVIKNGEKGDDGKKGEDGQDGQNGQNGTDGKDGQDGTDGKDGQDGTDGK 137
Query: 76 KTDHYAMGADTKSFSDG 92
G D + +DG
Sbjct: 138 DGQDGTDGKDGQDGTDG 154
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 33/57 (57%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G+ G DG+DG G+ G DG G++G DG G+DG GKDG GT+G G D
Sbjct: 100 GKKGEDGQDGQNGQNGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTD 156
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 10 VLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
V++ ++ D G+ G+ G +G DG G+ G DG G++G DG G+DG GKDG
Sbjct: 90 VIKNGEKGDDGKKGEDGQDGQNGQNGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQ 149
Query: 70 PGTNGT 75
GT+GT
Sbjct: 150 DGTDGT 155
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 29/49 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G G DG+DG G+ G DG G++G DG GKDG G DG G G K
Sbjct: 114 NGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDK 162
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 31/51 (60%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G+ G DG+DG G G DG G +G DG G DG G+DG GT+G + D
Sbjct: 111 NGQNGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGD 161
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 27/47 (57%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G DG+DG G G DG G +G DG G DG G +G G NGT
Sbjct: 121 GQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDKGQNGT 167
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G DG DG G+ G DG G++G DG G+DG G DG G G
Sbjct: 118 GKDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDKG 163
>gi|321471756|gb|EFX82728.1| hypothetical protein DAPPUDRAFT_36553 [Daphnia pulex]
Length = 90
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGT 75
++G G+ G +G G PGLDG+PG NG DGIPG DGL G+ GIPGTNGT
Sbjct: 39 LAGEPGIPGINGADGTPGLDGVPGVNGADGIPGLDGLNGAAGEPGIPGTNGT 90
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNG 74
S+ I G G++G DG+PG G GIPG NG DG PG DG+P G DGIPG +G
Sbjct: 21 SSGIDGVPGVNGADGIPGLAGEPGIPGINGADGTPGLDGVPGVNGADGIPGLDG 74
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 28/52 (53%), Gaps = 12/52 (23%)
Query: 36 RDGLPGEPGLDGIPGRNGMDGIP------------GKDGLPGKDGIPGTNGT 75
DG G G+DG+PG NG DGIP G DG PG DG+PG NG
Sbjct: 15 ADGPTGSSGIDGVPGVNGADGIPGLAGEPGIPGINGADGTPGLDGVPGVNGA 66
>gi|20178621|gb|AAL50184.1| collagen-like protein 2 [Streptococcus pyogenes]
Length = 444
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 40/60 (66%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+R +G A +G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG G +G
Sbjct: 259 ERGPVGPAGKDGQNGQDGLPGKDGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDG 318
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G+ GL G+DG G+ G DG+PG++G DG+PGKD GKDG PG KT DT
Sbjct: 302 NGKDGLPGKDGKDGQDGKDGLPGKDGKDGLPGKD---GKDGQPGKPAPKTPEVPQKPDTA 358
Query: 88 SFS 90
+
Sbjct: 359 PHT 361
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%), Gaps = 3/50 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNG 74
+G+ GL G+DG G+ G DG+PG++G DG GKDGLP GKDG+PG +G
Sbjct: 287 NGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGLPGKDG 336
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+R + G A G +G G+DG G+ DG+PG++G DG GKDGLPGKDG G NG
Sbjct: 247 ERGEAGPAGKDGERGPVGPAGKDGQNGQ---DGLPGKDGKDGQNGKDGLPGKDGKDGQNG 303
>gi|71981657|ref|NP_496311.2| Protein BLI-1 [Caenorhabditis elegans]
gi|115502367|sp|Q09457.2|BLI1_CAEEL RecName: Full=Cuticle collagen bli-1; AltName: Full=Blistered
cuticle protein 1; Flags: Precursor
gi|37619788|emb|CAA86755.2| Protein BLI-1 [Caenorhabditis elegans]
Length = 948
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG-----IPGTNGTKTDHYA 81
I G G++G+DG PG PG G G NG G PGK GLPG++G IPG G
Sbjct: 445 IDGEQGVNGQDGQPGAPGAPGYHGMNGSPGTPGKPGLPGRNGQSCKSIPGPPGQPGVMGV 504
Query: 82 MGADTKSFSDG 92
G D +DG
Sbjct: 505 PGRDGDPGTDG 515
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 29/47 (61%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G G DG G+PGE G+DG G NG DG PG G PG G+ G+ GT
Sbjct: 429 GERGPDGTPGVPGEDGIDGEQGVNGQDGQPGAPGAPGYHGMNGSPGT 475
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 36/78 (46%), Gaps = 14/78 (17%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMD--------------GIPGKDGLPGKDGIPGTNG 74
G G G +G PG PG G+PGRNG G+PG+DG PG DG G +G
Sbjct: 462 GAPGYHGMNGSPGTPGKPGLPGRNGQSCKSIPGPPGQPGVMGVPGRDGDPGTDGEHGQDG 521
Query: 75 TKTDHYAMGADTKSFSDG 92
+ G D S DG
Sbjct: 522 SPGIQGPPGRDGTSGPDG 539
Score = 42.4 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G+ GRDG PG G G G G+ G PG+DG G DG PG +
Sbjct: 500 GVMGVPGRDGDPGTDGEHGQDGSPGIQGPPGRDGTSGPDGQPGVSA 545
Score = 41.6 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 27/47 (57%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G PGE G DG PG G DGI G+ G+ G+DG PG G H G+
Sbjct: 426 GPPGERGPDGTPGVPGEDGIDGEQGVNGQDGQPGAPGAPGYHGMNGS 472
Score = 38.1 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG--KDGIPGTNG 74
G G DG G G PG+ G PGR DG G DG PG G PGT+G
Sbjct: 509 GDPGTDGEHGQDGSPGIQGPPGR---DGTSGPDGQPGVSAPGAPGTDG 553
>gi|50914143|ref|YP_060115.1| collagen-like surface protein [Streptococcus pyogenes MGAS10394]
gi|50903217|gb|AAT86932.1| Collagen-like surface protein [Streptococcus pyogenes MGAS10394]
Length = 362
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G+ G DG+DG G PG DG G++G DG+PGKDG GKDG+PG +G
Sbjct: 207 LPGKDGKDGQDGKDGLPGKDGKDGQDGKDGLPGKDGQDGKDGLPGKDG 254
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 35/47 (74%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG G +G
Sbjct: 172 NGKDGLPGKDGKDGQDGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDG 218
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 35/47 (74%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG G +G
Sbjct: 202 NGKDGLPGKDGKDGQDGKDGLPGKDGKDGQDGKDGLPGKDGQDGKDG 248
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 36/52 (69%), Gaps = 6/52 (11%)
Query: 29 GRIGLDGRDGLP------GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G DG+DGLP G+ G DG+PG++G DG GKDGLPGKDG G +G
Sbjct: 182 GKDGQDGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGQDG 233
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 12/67 (17%)
Query: 29 GRIGLDGRDGLPG------EPGLDGIPGRNGMDGIPGKDGLPGKDGI---PGTNGTKTDH 79
G+ G DG+DGLPG + G DG+PG++G D GKDGLPGKDG PG KT
Sbjct: 212 GKDGQDGKDGLPGKDGKDGQDGKDGLPGKDGQD---GKDGLPGKDGKDGQPGKPAPKTPE 268
Query: 80 YAMGADT 86
DT
Sbjct: 269 VPQKPDT 275
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G +G+DGLPG+ G DG G++G+ G GKDG GKDG+PG +G
Sbjct: 164 CETGPAGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGQNGKDGLPGKDG 212
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK 66
+ G+ G DG+DG G PG DG G++G+ G GKDG PGK
Sbjct: 222 LPGKDGKDGQDGKDGLPGKDGQDGKDGLPGKDGKDGQPGK 261
>gi|261414968|ref|YP_003248651.1| hypothetical protein Fisuc_0557 [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|385789928|ref|YP_005821051.1| hypothetical protein FSU_0981 [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261371424|gb|ACX74169.1| hypothetical protein Fisuc_0557 [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302325445|gb|ADL24646.1| conserved domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 572
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/48 (52%), Positives = 30/48 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+SG G DG DG G+ G +G G+NG DG GKDG GKDG G +G
Sbjct: 75 VSGSNGSDGHDGANGKDGTNGKDGKNGTDGKNGKDGTDGKDGADGKDG 122
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 36/101 (35%), Positives = 44/101 (43%), Gaps = 37/101 (36%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD------------------ 61
G+ I +V + G +G+DG PG G DG PG NG DG GKD
Sbjct: 142 GKPIGSV---KNGTNGKDGAPGTNGKDGTPGTNGKDGTNGKDGTSCSVAKAADSDDVVVT 198
Query: 62 ----------GLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
G+ GK G PGT GTK GAD + S+G
Sbjct: 199 CGDKSVTIHNGVDGKQGEPGTPGTK------GADGTNGSNG 233
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 41/98 (41%), Gaps = 26/98 (26%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK-----------------DGLP------- 64
G G DG++G G+ G DG G++G DG GK DG P
Sbjct: 92 GTNGKDGKNGTDGKNGKDGTDGKDGADGKDGKSCTMTAFKDGSGFDVICDGKPIGSVKNG 151
Query: 65 --GKDGIPGTNGTKTDHYAMGADTKSFSDGVLPSVQRA 100
GKDG PGTNG G D + DG SV +A
Sbjct: 152 TNGKDGAPGTNGKDGTPGTNGKDGTNGKDGTSCSVAKA 189
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS-----FSDG 92
+ G G DG G NG DG GKDG G DG G +GT A G D KS F DG
Sbjct: 74 AVSGSNGSDGHDGANGKDGTNGKDGKNGTDGKNGKDGTDGKDGADGKDGKSCTMTAFKDG 133
Score = 37.7 bits (86), Expect = 0.81, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 33/73 (45%), Gaps = 26/73 (35%)
Query: 28 SGRIGLDGRDGLPGEPG-----------------LDGIP------GRNGMDGIPG---KD 61
+G+ G DG+DG G+ G DG P G NG DG PG KD
Sbjct: 106 NGKDGTDGKDGADGKDGKSCTMTAFKDGSGFDVICDGKPIGSVKNGTNGKDGAPGTNGKD 165
Query: 62 GLPGKDGIPGTNG 74
G PG +G GTNG
Sbjct: 166 GTPGTNGKDGTNG 178
>gi|953173|emb|CAA80537.1| a2(IV) collagen [Caenorhabditis elegans]
Length = 1759
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 33/52 (63%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I G+ G G G PG+ GL G PG G G PG+DGLPG+DG+PG G K D
Sbjct: 1085 IPGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPGQKGD 1136
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 29 GRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLP------GKDGIPGTNGTKTDH 79
G GL G+ G PGE GL G+PGR G G PG+DGLP G+DG+PG G
Sbjct: 866 GLPGLSGQPGYPGEKGDAGLPGVPGREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLK 925
Query: 80 YAMGADTKSFSDGV 93
+GA +S + G+
Sbjct: 926 GDLGAPGQSGAPGL 939
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
L G+DG PG PG G +G+ G+PG GL G+ G+PG G K D A G K DG
Sbjct: 1282 LQGKDGFPGLPGQKG---ESGLSGLPGAPGLKGESGMPGFPGAKGDLGANGIPGKRGEDG 1338
Query: 93 VLPSV 97
LP V
Sbjct: 1339 -LPGV 1342
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G G G+DGLPG GL G+PG+ G G PG G PG DG PG G + D
Sbjct: 1109 MKGESGYPGQDGLPGRDGLPGVPGQKGDLGQSGQPGLSGAPGLDGQPGVPGIRGDK 1164
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR I G G G GLPG+PG GIPG G G+PG G G+ G PGT G
Sbjct: 1344 GRDGQPGIPGLKGEVGGAGLPGQPGFPGIPGLKGEGGLPGFPGAKGEAGFPGTPG 1398
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 9/58 (15%)
Query: 27 ISGRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G GL G G+PG PG +GIPG+ G DG+P G+PG+DG PG G K +
Sbjct: 1303 LPGAPGLKGESGMPGFPGAKGDLGANGIPGKRGEDGLP---GVPGRDGQPGIPGLKGE 1357
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G G G G PG PG DG+PG G+ G G G PG++G+PG +G K
Sbjct: 1205 FAGTPGFPGLKGSPGYPGQDGLPGIPGLKGDSGFPGQPGQEGLPGLSGEK 1254
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G+ GL GRDGLPG PG G G++G G+ G GL G+ G+PG G K
Sbjct: 1112 ESGYPGQDGLPGRDGLPGVPGQKGDLGQSGQPGLSGAPGLDGQPGVPGIRGDK 1164
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK--DGIPGTNGTKTDHYAMGADTKSF 89
GL G+DG +PGLDG PGR G +G+PG G PG +G+PG G + G D +
Sbjct: 461 GLPGKDG---KPGLDGAPGRKGENGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDGRDG 517
Query: 90 SDGV 93
+G+
Sbjct: 518 VNGL 521
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 35/74 (47%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G+ S G G G GLPG PGL+G G G G+ G DGLPG G PG G K D
Sbjct: 824 GQPGSPGFPGLKGDAGLPGLPGTPGLEGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKGDA 883
Query: 80 YAMGADTKSFSDGV 93
G + S G
Sbjct: 884 GLPGVPGREGSPGF 897
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 30/52 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G G G DGLPG PG DG PG G+ G G GLPG+ G PG G K +
Sbjct: 1327 ANGIPGKRGEDGLPGVPGRDGQPGIPGLKGEVGGAGLPGQPGFPGIPGLKGE 1378
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
G GL G G PG+PG G+PG G G G G PG+DG+PG G K + G D
Sbjct: 1062 FKGETGLPGY-GQPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDG 1120
Query: 87 KSFSDGVLPSV 97
DG LP V
Sbjct: 1121 LPGRDG-LPGV 1130
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPG 71
++ D G G G G+DGLPG PG+ DG+PG G+ G+ G G PG+ G PG
Sbjct: 879 EKGDAGLPGVPGREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLKGDLGAPGQSGAPG 938
Query: 72 TNGT 75
G
Sbjct: 939 LPGA 942
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGKDGLP---GKDGIPGTNGTK 76
+ G G+ G DGLPG PG+ G+ PG++G G+PG G P G GIPG G K
Sbjct: 903 LPGVPGMKGEDGLPGLPGVTGLKGDLGAPGQSGAPGLPGAPGYPGMKGNAGIPGVPGFK 961
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMD---GIPGKDGLPGKDGIPGTNGTK 76
GR S G+ GL G G+ GE GL G+PG G+ G PG+ G PG G PG G K
Sbjct: 890 GREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLKGDLGAPGQSGAPGLPGAPGYPGMK 949
Query: 77 TD 78
+
Sbjct: 950 GN 951
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
PG+PGL G+PG G G PG+ G G+ G PG G K D
Sbjct: 728 PGQPGLPGLPGTKGEGGYPGRPGEVGQPGFPGLPGMKGDS 767
>gi|71903419|ref|YP_280222.1| collagen-like surface protein [Streptococcus pyogenes MGAS6180]
gi|71802514|gb|AAX71867.1| collagen-like surface protein [Streptococcus pyogenes MGAS6180]
Length = 422
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 40/60 (66%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+R +G A +G+ GL G+DG G+ G DG+PG++G DG GKDGLPGKDG G +G
Sbjct: 237 ERGPVGPAGKDGQNGQDGLPGKDGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDG 296
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G+ GL G+DG G+ G DG+PG++G DG+PGKD GKDG PG KT DT
Sbjct: 280 NGKDGLPGKDGKDGQDGKDGLPGKDGKDGLPGKD---GKDGQPGKPAPKTPEVPQKPDTA 336
Query: 88 SFS 90
+
Sbjct: 337 PHT 339
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%), Gaps = 3/50 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNG 74
+G+ GL G+DG G+ G DG+PG++G DG GKDGLP GKDG+PG +G
Sbjct: 265 NGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGLPGKDG 314
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+R + G A G +G G+DG G+ DG+PG++G DG GKDGLPGKDG G NG
Sbjct: 225 ERGEAGPAGKDGERGPVGPAGKDGQNGQ---DGLPGKDGKDGQNGKDGLPGKDGKDGQNG 281
>gi|17568913|ref|NP_510663.1| Protein LET-2, isoform b [Caenorhabditis elegans]
gi|351061153|emb|CCD68907.1| Protein LET-2, isoform b [Caenorhabditis elegans]
Length = 1759
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 33/52 (63%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I G+ G G G PG+ GL G PG G G PG+DGLPG+DG+PG G K D
Sbjct: 1085 IPGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPGQKGD 1136
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 29 GRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLP------GKDGIPGTNGTKTDH 79
G GL G+ G PGE GL G+PGR G G PG+DGLP G+DG+PG G
Sbjct: 866 GLPGLSGQPGYPGEKGDAGLPGVPGREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLK 925
Query: 80 YAMGADTKSFSDGV 93
+GA +S + G+
Sbjct: 926 GDLGAPGQSGAPGL 939
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
L G+DG PG PG G +G+ G+PG GL G+ G+PG G K D A G K DG
Sbjct: 1282 LQGKDGFPGLPGQKG---ESGLSGLPGAPGLKGESGMPGFPGAKGDLGANGIPGKRGEDG 1338
Query: 93 VLPSV 97
LP V
Sbjct: 1339 -LPGV 1342
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G G G+DGLPG GL G+PG+ G G PG G PG DG PG G + D
Sbjct: 1109 MKGESGYPGQDGLPGRDGLPGVPGQKGDLGQSGQPGLSGAPGLDGQPGVPGIRGDK 1164
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR I G G G GLPG+PG GIPG G G+PG G G+ G PGT G
Sbjct: 1344 GRDGQPGIPGLKGEVGGAGLPGQPGFPGIPGLKGEGGLPGFPGAKGEAGFPGTPG 1398
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 9/58 (15%)
Query: 27 ISGRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G GL G G+PG PG +GIPG+ G DG+P G+PG+DG PG G K +
Sbjct: 1303 LPGAPGLKGESGMPGFPGAKGDLGANGIPGKRGEDGLP---GVPGRDGQPGIPGLKGE 1357
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G G G G PG PG DG+PG G+ G G G PG++G+PG +G K
Sbjct: 1205 FAGTPGFPGLKGSPGYPGQDGLPGIPGLKGDSGFPGQPGQEGLPGLSGEK 1254
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G+ GL GRDGLPG PG G G++G G+ G GL G+ G+PG G K
Sbjct: 1112 ESGYPGQDGLPGRDGLPGVPGQKGDLGQSGQPGLSGAPGLDGQPGVPGIRGDK 1164
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK--DGIPGTNGTKTDHYAMGADTKSF 89
GL G+DG +PGLDG PGR G +G+PG G PG +G+PG G + G D +
Sbjct: 461 GLPGKDG---KPGLDGAPGRKGENGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDGRDG 517
Query: 90 SDGV 93
+G+
Sbjct: 518 VNGL 521
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 35/74 (47%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G+ S G G G GLPG PGL+G G G G+ G DGLPG G PG G K D
Sbjct: 824 GQPGSPGFPGLKGDAGLPGLPGTPGLEGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKGDA 883
Query: 80 YAMGADTKSFSDGV 93
G + S G
Sbjct: 884 GLPGVPGREGSPGF 897
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 30/52 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G G G DGLPG PG DG PG G+ G G GLPG+ G PG G K +
Sbjct: 1327 ANGIPGKRGEDGLPGVPGRDGQPGIPGLKGEVGGAGLPGQPGFPGIPGLKGE 1378
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
G GL G G PG+PG G+PG G G G G PG+DG+PG G K + G D
Sbjct: 1062 FKGETGLPGY-GQPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDG 1120
Query: 87 KSFSDGVLPSV 97
DG LP V
Sbjct: 1121 LPGRDG-LPGV 1130
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPG 71
++ D G G G G+DGLPG PG+ DG+PG G+ G+ G G PG+ G PG
Sbjct: 879 EKGDAGLPGVPGREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLKGDLGAPGQSGAPG 938
Query: 72 TNGT 75
G
Sbjct: 939 LPGA 942
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGKDGLP---GKDGIPGTNGTK 76
+ G G+ G DGLPG PG+ G+ PG++G G+PG G P G GIPG G K
Sbjct: 903 LPGVPGMKGEDGLPGLPGVTGLKGDLGAPGQSGAPGLPGAPGYPGMKGNAGIPGVPGFK 961
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMD---GIPGKDGLPGKDGIPGTNGTK 76
GR S G+ GL G G+ GE GL G+PG G+ G PG+ G PG G PG G K
Sbjct: 890 GREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLKGDLGAPGQSGAPGLPGAPGYPGMK 949
Query: 77 TD 78
+
Sbjct: 950 GN 951
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
PG+PGL G+PG G G PG+ G G+ G PG G K D
Sbjct: 728 PGQPGLPGLPGTKGEGGYPGRPGEVGQPGFPGLPGMKGDS 767
>gi|732526|gb|AAA64312.1| alpha2(IV) collagen [Caenorhabditis elegans]
Length = 1795
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 33/52 (63%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I G+ G G G PG+ GL G PG G G PG+DGLPG+DG+PG G K D
Sbjct: 1121 IPGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPGQKGD 1172
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 29 GRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLP------GKDGIPGTNGTKTDH 79
G GL G+ G PGE GL G+PGR G G PG+DGLP G+DG+PG G
Sbjct: 902 GLPGLSGQPGYPGEKGDAGLPGVPGREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLK 961
Query: 80 YAMGADTKSFSDGV 93
+GA +S + G+
Sbjct: 962 GDLGAPGQSGAPGL 975
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
L G+DG PG PG G +G+ G+PG GL G+ G+PG G K D A G K DG
Sbjct: 1318 LQGKDGFPGLPGQKG---ESGLSGLPGAPGLKGESGMPGFPGAKGDLGANGIPGKRGEDG 1374
Query: 93 VLPSV 97
LP V
Sbjct: 1375 -LPGV 1378
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G G G+DGLPG GL G+PG+ G G PG G PG DG PG G + D
Sbjct: 1145 MKGESGYPGQDGLPGRDGLPGVPGQKGDLGQSGQPGLSGAPGLDGQPGVPGIRGDK 1200
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR I G G G GLPG+PG GIPG G G+PG G G+ G PGT G
Sbjct: 1380 GRDGQPGIPGLKGEVGGAGLPGQPGFPGIPGLKGEGGLPGFPGAKGEAGFPGTPG 1434
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 9/58 (15%)
Query: 27 ISGRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G GL G G+PG PG +GIPG+ G DG+P G+PG+DG PG G K +
Sbjct: 1339 LPGAPGLKGESGMPGFPGAKGDLGANGIPGKRGEDGLP---GVPGRDGQPGIPGLKGE 1393
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G G G G PG PG DG+PG G+ G G G PG++G+PG +G K
Sbjct: 1241 FAGTPGFPGLKGSPGYPGQDGLPGIPGLKGDSGFPGQPGQEGLPGLSGEK 1290
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G+ GL GRDGLPG PG G G++G G+ G GL G+ G+PG G K
Sbjct: 1148 ESGYPGQDGLPGRDGLPGVPGQKGDLGQSGQPGLSGAPGLDGQPGVPGIRGDK 1200
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK--DGIPGTNGTKTDHYAMGADTKSF 89
GL G+DG +PGLDG PGR G +G+PG G PG +G+PG G + G D +
Sbjct: 497 GLPGKDG---KPGLDGAPGRKGENGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDGRDG 553
Query: 90 SDGV 93
+G+
Sbjct: 554 VNGL 557
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 35/74 (47%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G+ S G G G GLPG PGL+G G G G+ G DGLPG G PG G K D
Sbjct: 860 GQPGSPGFPGLKGDAGLPGLPGTPGLEGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKGDA 919
Query: 80 YAMGADTKSFSDGV 93
G + S G
Sbjct: 920 GLPGVPGREGSPGF 933
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 30/52 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G G G DGLPG PG DG PG G+ G G GLPG+ G PG G K +
Sbjct: 1363 ANGIPGKRGEDGLPGVPGRDGQPGIPGLKGEVGGAGLPGQPGFPGIPGLKGE 1414
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
G GL G G PG+PG G+PG G G G G PG+DG+PG G K + G D
Sbjct: 1098 FKGETGLPGY-GQPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDG 1156
Query: 87 KSFSDGVLPSV 97
DG LP V
Sbjct: 1157 LPGRDG-LPGV 1166
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPG 71
++ D G G G G+DGLPG PG+ DG+PG G+ G+ G G PG+ G PG
Sbjct: 915 EKGDAGLPGVPGREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLKGDLGAPGQSGAPG 974
Query: 72 TNGT 75
G
Sbjct: 975 LPGA 978
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGKDGLP---GKDGIPGTNGTK 76
+ G G+ G DGLPG PG+ G+ PG++G G+PG G P G GIPG G K
Sbjct: 939 LPGVPGMKGEDGLPGLPGVTGLKGDLGAPGQSGAPGLPGAPGYPGMKGNAGIPGVPGFK 997
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMD---GIPGKDGLPGKDGIPGTNGTK 76
GR S G+ GL G G+ GE GL G+PG G+ G PG+ G PG G PG G K
Sbjct: 926 GREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLKGDLGAPGQSGAPGLPGAPGYPGMK 985
Query: 77 TD 78
+
Sbjct: 986 GN 987
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
PG+PGL G+PG G G PG+ G G+ G PG G K D
Sbjct: 764 PGQPGLPGLPGTKGEGGYPGRPGEVGQPGFPGLPGMKGDS 803
>gi|584868|sp|P17140.2|CO4A2_CAEEL RecName: Full=Collagen alpha-2(IV) chain; AltName: Full=Lethal
protein 2; Flags: Precursor
gi|953172|emb|CAA80536.1| a2(IV) collagen [Caenorhabditis elegans]
Length = 1758
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 33/52 (63%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I G+ G G G PG+ GL G PG G G PG+DGLPG+DG+PG G K D
Sbjct: 1084 IPGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPGQKGD 1135
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 29 GRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLP------GKDGIPGTNGTKTDH 79
G GL G+ G PGE GL G+PGR G G PG+DGLP G+DG+PG G
Sbjct: 865 GLPGLSGQPGYPGEKGDAGLPGVPGREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLK 924
Query: 80 YAMGADTKSFSDGV 93
+GA +S + G+
Sbjct: 925 GDLGAPGQSGAPGL 938
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
L G+DG PG PG G +G+ G+PG GL G+ G+PG G K D A G K DG
Sbjct: 1281 LQGKDGFPGLPGQKG---ESGLSGLPGAPGLKGESGMPGFPGAKGDLGANGIPGKRGEDG 1337
Query: 93 VLPSV 97
LP V
Sbjct: 1338 -LPGV 1341
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G G G+DGLPG GL G+PG+ G G PG G PG DG PG G + D
Sbjct: 1108 MKGESGYPGQDGLPGRDGLPGVPGQKGDLGQSGQPGLSGAPGLDGQPGVPGIRGDK 1163
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 9/58 (15%)
Query: 27 ISGRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G GL G G+PG PG +GIPG+ G DG+P G+PG+DG PG G K +
Sbjct: 1302 LPGAPGLKGESGMPGFPGAKGDLGANGIPGKRGEDGLP---GVPGRDGQPGIPGLKGE 1356
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR I G G G GLPG+PG GIPG G G+PG G G+ G PGT G
Sbjct: 1343 GRDGQPGIPGLKGEVGGAGLPGQPGFPGIPGLKGEGGLPGFPGAKGEAGFPGTPG 1397
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G G G G PG PG DG+PG G+ G G G PG++G+PG +G K
Sbjct: 1204 FAGTPGFPGLKGSPGYPGQDGLPGIPGLKGDSGFPGQPGQEGLPGLSGEK 1253
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G+ GL GRDGLPG PG G G++G G+ G GL G+ G+PG G K
Sbjct: 1111 ESGYPGQDGLPGRDGLPGVPGQKGDLGQSGQPGLSGAPGLDGQPGVPGIRGDK 1163
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK--DGIPGTNGTKTDHYAMGADTKSF 89
GL G+DG +PGLDG PGR G +G+PG G PG +G+PG G + G D +
Sbjct: 460 GLPGKDG---KPGLDGAPGRKGENGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDGRDG 516
Query: 90 SDGV 93
+G+
Sbjct: 517 VNGL 520
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 35/74 (47%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G+ S G G G GLPG PGL+G G G G+ G DGLPG G PG G K D
Sbjct: 823 GQPGSPGFPGLKGDAGLPGLPGTPGLEGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKGDA 882
Query: 80 YAMGADTKSFSDGV 93
G + S G
Sbjct: 883 GLPGVPGREGSPGF 896
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 30/52 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G G G DGLPG PG DG PG G+ G G GLPG+ G PG G K +
Sbjct: 1326 ANGIPGKRGEDGLPGVPGRDGQPGIPGLKGEVGGAGLPGQPGFPGIPGLKGE 1377
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
G GL G G PG+PG G+PG G G G G PG+DG+PG G K + G D
Sbjct: 1061 FKGETGLPGY-GQPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDG 1119
Query: 87 KSFSDGVLPSV 97
DG LP V
Sbjct: 1120 LPGRDG-LPGV 1129
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPG 71
++ D G G G G+DGLPG PG+ DG+PG G+ G+ G G PG+ G PG
Sbjct: 878 EKGDAGLPGVPGREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLKGDLGAPGQSGAPG 937
Query: 72 TNGT 75
G
Sbjct: 938 LPGA 941
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGKDGLP---GKDGIPGTNGTK 76
+ G G+ G DGLPG PG+ G+ PG++G G+PG G P G GIPG G K
Sbjct: 902 LPGVPGMKGEDGLPGLPGVTGLKGDLGAPGQSGAPGLPGAPGYPGMKGNAGIPGVPGFK 960
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMD---GIPGKDGLPGKDGIPGTNGTK 76
GR S G+ GL G G+ GE GL G+PG G+ G PG+ G PG G PG G K
Sbjct: 889 GREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLKGDLGAPGQSGAPGLPGAPGYPGMK 948
Query: 77 TD 78
+
Sbjct: 949 GN 950
>gi|17568911|ref|NP_510664.1| Protein LET-2, isoform a [Caenorhabditis elegans]
gi|351061152|emb|CCD68906.1| Protein LET-2, isoform a [Caenorhabditis elegans]
Length = 1758
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 33/52 (63%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I G+ G G G PG+ GL G PG G G PG+DGLPG+DG+PG G K D
Sbjct: 1084 IPGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPGQKGD 1135
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 29 GRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLP------GKDGIPGTNGTKTDH 79
G GL G+ G PGE GL G+PGR G G PG+DGLP G+DG+PG G
Sbjct: 865 GLPGLSGQPGYPGEKGDAGLPGVPGREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLK 924
Query: 80 YAMGADTKSFSDGV 93
+GA +S + G+
Sbjct: 925 GDLGAPGQSGAPGL 938
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
L G+DG PG PG G +G+ G+PG GL G+ G+PG G K D A G K DG
Sbjct: 1281 LQGKDGFPGLPGQKG---ESGLSGLPGAPGLKGESGMPGFPGAKGDLGANGIPGKRGEDG 1337
Query: 93 VLPSV 97
LP V
Sbjct: 1338 -LPGV 1341
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G G G+DGLPG GL G+PG+ G G PG G PG DG PG G + D
Sbjct: 1108 MKGESGYPGQDGLPGRDGLPGVPGQKGDLGQSGQPGLSGAPGLDGQPGVPGIRGDK 1163
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 9/58 (15%)
Query: 27 ISGRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G GL G G+PG PG +GIPG+ G DG+P G+PG+DG PG G K +
Sbjct: 1302 LPGAPGLKGESGMPGFPGAKGDLGANGIPGKRGEDGLP---GVPGRDGQPGIPGLKGE 1356
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR I G G G GLPG+PG GIPG G G+PG G G+ G PGT G
Sbjct: 1343 GRDGQPGIPGLKGEVGGAGLPGQPGFPGIPGLKGEGGLPGFPGAKGEAGFPGTPG 1397
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G G G G PG PG DG+PG G+ G G G PG++G+PG +G K
Sbjct: 1204 FAGTPGFPGLKGSPGYPGQDGLPGIPGLKGDSGFPGQPGQEGLPGLSGEK 1253
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G+ GL GRDGLPG PG G G++G G+ G GL G+ G+PG G K
Sbjct: 1111 ESGYPGQDGLPGRDGLPGVPGQKGDLGQSGQPGLSGAPGLDGQPGVPGIRGDK 1163
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK--DGIPGTNGTKTDHYAMGADTKSF 89
GL G+DG +PGLDG PGR G +G+PG G PG +G+PG G + G D +
Sbjct: 460 GLPGKDG---KPGLDGAPGRKGENGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDGRDG 516
Query: 90 SDGV 93
+G+
Sbjct: 517 VNGL 520
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 35/74 (47%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G+ S G G G GLPG PGL+G G G G+ G DGLPG G PG G K D
Sbjct: 823 GQPGSPGFPGLKGDAGLPGLPGTPGLEGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKGDA 882
Query: 80 YAMGADTKSFSDGV 93
G + S G
Sbjct: 883 GLPGVPGREGSPGF 896
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 30/52 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G G G DGLPG PG DG PG G+ G G GLPG+ G PG G K +
Sbjct: 1326 ANGIPGKRGEDGLPGVPGRDGQPGIPGLKGEVGGAGLPGQPGFPGIPGLKGE 1377
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
G GL G G PG+PG G+PG G G G G PG+DG+PG G K + G D
Sbjct: 1061 FKGETGLPGY-GQPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDG 1119
Query: 87 KSFSDGVLPSV 97
DG LP V
Sbjct: 1120 LPGRDG-LPGV 1129
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPG 71
++ D G G G G+DGLPG PG+ DG+PG G+ G+ G G PG+ G PG
Sbjct: 878 EKGDAGLPGVPGREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLKGDLGAPGQSGAPG 937
Query: 72 TNGT 75
G
Sbjct: 938 LPGA 941
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGKDGLP---GKDGIPGTNGTK 76
+ G G+ G DGLPG PG+ G+ PG++G G+PG G P G GIPG G K
Sbjct: 902 LPGVPGMKGEDGLPGLPGVTGLKGDLGAPGQSGAPGLPGAPGYPGMKGNAGIPGVPGFK 960
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMD---GIPGKDGLPGKDGIPGTNGTK 76
GR S G+ GL G G+ GE GL G+PG G+ G PG+ G PG G PG G K
Sbjct: 889 GREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLKGDLGAPGQSGAPGLPGAPGYPGMK 948
Query: 77 TD 78
+
Sbjct: 949 GN 950
>gi|47229450|emb|CAF99438.1| unnamed protein product [Tetraodon nigroviridis]
Length = 925
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 9 QVLEVHDRR------DIGRAISTVIS-GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD 61
QV++V D R + R + S GR G G+DG PG PGL G PGR G G+
Sbjct: 760 QVIKVFDERMAYYMSRMQRPVEMAASPGRPGAPGKDGAPGSPGLPGTPGRPGHL---GRQ 816
Query: 62 GLPGKDGIPGTNGTKTD 78
GLPG G+PG G K D
Sbjct: 817 GLPGSQGMPGPQGPKGD 833
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G G+PG PGL G PGR+G G+ G+ G PG G G G K
Sbjct: 210 QGERGEQGMAGVPGTPGLPGEPGRDGSMGLMGEKGKPGLAGPQGPAGPK 258
>gi|386815927|ref|ZP_10103145.1| Collagen triple helix repeat-containing protein [Thiothrix nivea
DSM 5205]
gi|386420503|gb|EIJ34338.1| Collagen triple helix repeat-containing protein [Thiothrix nivea
DSM 5205]
Length = 1198
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ G+DG+DG G+ G+DG G NG DG+ GKDG GKDG+ G +G
Sbjct: 529 TNGKDGVDGKDGTNGKDGVDGKDGTNGKDGVDGKDGTNGKDGVDGKDG 576
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 37/67 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+G G DG+DG G+ G DG G++G+DG GKDG+ GKDG G NG A G D
Sbjct: 848 ATGANGADGKDGADGKDGADGKDGKDGVDGKDGKDGVDGKDGATGANGADGKDGADGKDG 907
Query: 87 KSFSDGV 93
DG
Sbjct: 908 ADGKDGA 914
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ G+DG+DG G+ G+DG G NG DG+ GKDG G G GTNG
Sbjct: 484 TNGKDGVDGKDGTNGKDGVDGKDGTNGKDGVDGKDGATGPAGKDGTNG 531
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ G+DG+DG G+ G+DG G NG DG+ GKDG G G GTNG
Sbjct: 541 TNGKDGVDGKDGTNGKDGVDGKDGTNGKDGVDGKDGATGPAGKDGTNG 588
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA---MG 83
G+ G DG+DG G+ G DG+ G++G DG+ GKDG G +G G +G A G
Sbjct: 854 ADGKDGADGKDGADGKDGKDGVDGKDGKDGVDGKDGATGANGADGKDGADGKDGADGKDG 913
Query: 84 ADTKSFSDGV 93
AD K DGV
Sbjct: 914 ADGKDGKDGV 923
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+G+ G+DG+DG G G DG NG DG+ GKDG GKDG+ G +GT G D
Sbjct: 508 TNGKDGVDGKDGATGPAGKDGT---NGKDGVDGKDGTNGKDGVDGKDGTNGKDGVDGKDG 564
Query: 87 KSFSDGV 93
+ DGV
Sbjct: 565 TNGKDGV 571
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 34/59 (57%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
G+ G+DG+DG G G DG G +G DG GKDG GKDG G +G A GAD K
Sbjct: 880 GKDGVDGKDGATGANGADGKDGADGKDGADGKDGADGKDGKDGVDGKDGATGANGADGK 938
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G+ G+DG+DG G G DG G++G DG GKDG+ GKDG G +G A GAD
Sbjct: 838 GKDGVDGKDGATGANGADGKDGADGKDGADGKDGKDGVDGKDGKDGVDGKDGATGANGAD 897
Query: 86 TKSFSDG 92
K +DG
Sbjct: 898 GKDGADG 904
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+G+ G+DG+DG G G DG NG DG+ GKDG GKDG+ G +GT
Sbjct: 463 TNGKDGVDGKDGATGPAGKDGT---NGKDGVDGKDGTNGKDGVDGKDGT 508
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+G+ G+DG+DG G G DG NG DG+ GKDG GKDG+ G +G A G++
Sbjct: 649 TNGKDGVDGKDGATGPAGKDGT---NGKDGVDGKDGTNGKDGVDGKDGKDGATGATGSNG 705
Query: 87 KSFSDGVLPSVQRAIAA 103
DG Q A A
Sbjct: 706 ADGKDGAT-GAQGATGA 721
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G G +G DG G G DG G++G DG GKDG+ GKDG G NG A GA
Sbjct: 889 GATGANGADGKDGADGKDGADGKDGADGKDGKDGVDGKDGATGANGADGKDGATGA 944
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+DG G+ G+DG G NG DG+ GKDG GKDG+ G +G
Sbjct: 480 GKDGTNGKDGVDGKDGTNGKDGVDGKDGTNGKDGVDGKDG 519
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+G+ G+DG+DG G+ G+DG G++G G G +G GKDG G G A GAD
Sbjct: 670 TNGKDGVDGKDGTNGKDGVDGKDGKDGATGATGSNGADGKDGATGAQGA---TGANGADG 726
Query: 87 KSFSDGVLPSVQRAIAAGLVIYRF 110
K + G + AG + +
Sbjct: 727 KDGATGATGANGATGTAGQGFFDW 750
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI------PGKDGLPGKDGIPGTNGTKTDHY 80
+G+ G+DG+DG G G DG G++G+DG GKDG GKDG+ G +GT +
Sbjct: 628 TNGKDGVDGKDGATGPAGKDGTNGKDGVDGKDGATGPAGKDGTNGKDGVDGKDGT---NG 684
Query: 81 AMGADTKSFSDGVLPSV 97
G D K DG +
Sbjct: 685 KDGVDGKDGKDGATGAT 701
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ +T +G+ G +G+DG G G DG G++G G GKDG GKDG+ G +GT
Sbjct: 408 GKDGATGPAGKDGANGKDGATGPAGKDGANGKDGATGPAGKDGTNGKDGVDGKDGT 463
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+ +T +G+ G +G+DG+ G+ G DG+ G++G G GKDG GKDG+ G +GT
Sbjct: 438 GKDGATGPAGKDGTNGKDGVDGKDGTNGKDGVDGKDGATGPAGKDGTNGKDGVDGKDGTN 497
Query: 77 TDHYAMGADTKSFSDGV 93
G D + DGV
Sbjct: 498 GKDGVDGKDGTNGKDGV 514
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ +T +G+ G +G+DG+ G+ G +G G +G DG GKDG+ GKDG G +G
Sbjct: 516 GKDGATGPAGKDGTNGKDGVDGKDGTNGKDGVDGKDGTNGKDGVDGKDGTNGKDG 570
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL------PGKDGIPGTN 73
G+ +T +G G DG DG G G DG G++G DG+ GKDG GKDG G N
Sbjct: 886 GKDGATGANGADGKDGADGKDGADGKDGADGKDGKDGVDGKDGATGANGADGKDGATGAN 945
Query: 74 G 74
G
Sbjct: 946 G 946
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ +T +G+ G +G+DG G G DG NG DG+ GKDG GKDG+ G +G
Sbjct: 423 GKDGATGPAGKDGANGKDGATGPAGKDGT---NGKDGVDGKDGTNGKDGVDGKDG 474
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G+ +T +G+ G +G+DG+ G+ G +G G +G DG GKDG+ GKDG G
Sbjct: 471 GKDGATGPAGKDGTNGKDGVDGKDGTNGKDGVDGKDGTNGKDGVDGKDGATG 522
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 6/54 (11%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI------PGKDGLPGKDGIPGTNG 74
+G+ G+DG+DG G G DG G++G+DG GKDG GKDG+ G +G
Sbjct: 565 TNGKDGVDGKDGATGPAGKDGTNGKDGVDGKDGATGPAGKDGTNGKDGVDGKDG 618
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 6/54 (11%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI------PGKDGLPGKDGIPGTNG 74
+G+ G+DG+DG G G DG G++G+DG GKDG GKDG+ G +G
Sbjct: 586 TNGKDGVDGKDGATGPAGKDGTNGKDGVDGKDGATGPAGKDGTNGKDGVDGKDG 639
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 6/54 (11%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI------PGKDGLPGKDGIPGTNG 74
+G+ G+DG+DG G G DG G++G+DG GKDG GKDG+ G +G
Sbjct: 607 TNGKDGVDGKDGATGPAGKDGTNGKDGVDGKDGATGPAGKDGTNGKDGVDGKDG 660
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGKDGIPGTNG 74
+G+ G+DG+DG G+ G+DG G G DG GKDG+ GKDG G +G
Sbjct: 496 TNGKDGVDGKDGTNGKDGVDGKDGATGPAGKDGTNGKDGVDGKDGTNGKDG 546
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGKDGIPG 71
+G+ G+DG+DG G+ G+DG G G DG GKDG+ GKDG G
Sbjct: 553 TNGKDGVDGKDGTNGKDGVDGKDGATGPAGKDGTNGKDGVDGKDGATG 600
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G+ G +G+DG+ G+ G DG+ G++G G GKDG GKDG+ G +G
Sbjct: 547 VDGKDGTNGKDGVDGKDGTNGKDGVDGKDGATGPAGKDGTNGKDGVDGKDG 597
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G+ +T +G+ G +G+DG G G DG G++G G GKDG GKDG G
Sbjct: 348 GKDGATGPAGKDGANGKDGATGPAGKDGANGKDGATGPAGKDGANGKDGATG 399
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G+ +T +G+ G +G+DG G G DG G++G G GKDG GKDG G
Sbjct: 363 GKDGATGPAGKDGANGKDGATGPAGKDGANGKDGATGPAGKDGANGKDGATG 414
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G+ +T +G+ G +G+DG G G DG G++G G GKDG GKDG G
Sbjct: 378 GKDGATGPAGKDGANGKDGATGPAGKDGANGKDGATGPAGKDGANGKDGATG 429
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G+ +T +G+ G +G+DG G G DG G++G G GKDG GKDG G
Sbjct: 393 GKDGATGPAGKDGANGKDGATGPAGKDGANGKDGATGPAGKDGANGKDGATG 444
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGR---NGMDGIPGKDGLPGKDGIPGTNG 74
G+ +T +G+ G +G+DG+ G+ G G G+ NG DG+ GKDG G G GTNG
Sbjct: 573 GKDGATGPAGKDGTNGKDGVDGKDGATGPAGKDGTNGKDGVDGKDGATGPAGKDGTNG 630
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGR---NGMDGIPGKDGLPGKDGIPGTNG 74
G+ +T +G+ G +G+DG+ G+ G G G+ NG DG+ GKDG G G GTNG
Sbjct: 594 GKDGATGPAGKDGTNGKDGVDGKDGATGPAGKDGTNGKDGVDGKDGATGPAGKDGTNG 651
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+G+ G +G+DG G G DG G++G G GKDG GKDG G
Sbjct: 341 AGKDGANGKDGATGPAGKDGANGKDGATGPAGKDGANGKDGATG 384
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DG+DG+ G+ G G G +G DG GKDG GKDG G +G
Sbjct: 837 DGKDGVDGKDGATGANGADGKDGADGKDGADGKDGKDGVDG 877
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGR---NGMDGIPGKDGLPGKDGIPGTNG 74
+ G+ G +G+DG+ G+ G G G+ NG DG+ GKDG G G GTNG
Sbjct: 559 VDGKDGTNGKDGVDGKDGATGPAGKDGTNGKDGVDGKDGATGPAGKDGTNG 609
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 67
G+ G DG+DG G G DG+ G++G G G DG GKD
Sbjct: 991 GKDGADGKDGANGADGKDGVDGKDGATGANGADGKDGKD 1029
>gi|326668779|ref|XP_002662551.2| PREDICTED: collagen alpha-1(VII) chain-like [Danio rerio]
Length = 2698
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGR---NGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
GL GR G PG PG+ G PGR NG G PG GLPG+DG PG+ GT ++ D S
Sbjct: 1154 GLPGRKGEPGIPGIPGTPGRQGVNGAKGEPGARGLPGQDGRPGSQGTP--GLSIKGDKGS 1211
Query: 89 FSDGVLPSVQRAIAA 103
+ LP V +AA
Sbjct: 1212 PGERGLPGVGSGVAA 1226
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G GLPG G G G G G+PG+DG PGKDG+PG NG +
Sbjct: 2029 VQGPPGPQGNRGLPGPAGTPGAIGEGGKPGVPGRDGAPGKDGLPGLNGKQ 2078
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D + G A S G +G G+DGL G+ G DGI G G+ G PG+ GL G G G G
Sbjct: 1404 DAGERGEAGSPGSQGPMGPRGKDGLKGDKGEDGIAGEPGLPGKPGERGLRGLPGQSGQPG 1463
Query: 75 TKTDHYAMGADTKSFSDGVL 94
TK D G D ++ + G +
Sbjct: 1464 TKGDTGDPGEDGRNGTPGTM 1483
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 31 IGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ G G G PGLDG IPGR+G G+PG GLPG G PG G
Sbjct: 1074 LGVKGEKGERGFPGLDGSSGIPGRSGAVGLPGSQGLPGIRGDPGEPG 1120
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 30 RIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G DG+ GLPG+ G DG+PG +G G G+ G G+DG G G +
Sbjct: 1657 KAGEDGKSGLPGKTGEDGVPGEDGRKGDKGEQGPAGRDGRDGIKGDR 1703
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 28/51 (54%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
GLDG G+PG G G+PG G+ GI G G PG G G+ G K + M
Sbjct: 1087 GLDGSSGIPGRSGAVGLPGSQGLPGIRGDPGEPGLIGPQGSKGEKGEREMM 1137
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G GL G G PG G G PG G DG PGKDGLPG +G G G
Sbjct: 2037 GNRGLPGPAGTPGAIGEGGKPGVPGRDGAPGKDGLPGLNGKQGIAG 2082
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD-GIPGTNGTK 76
G G DG DG GEPG DG+PGR G G G G PG G+ G G +
Sbjct: 1035 GERGRDGVDGRKGEPGRDGLPGREGPRGPEGTPGQPGSSLGVKGEKGER 1083
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG------KDGLPGKDGIPGTNGTK 76
G G G++G PGE GL G G G G G + G PGKDG+PG G K
Sbjct: 2299 GEKGAKGQEGPPGEQGLRGEQGERGSTGFQGARGPGGQKGTPGKDGLPGMRGEK 2352
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 13/61 (21%)
Query: 27 ISGRIGLDGRDGLPGEPGLD----------GIPGRNGMDGIPGKD---GLPGKDGIPGTN 73
+ GR G G +G PG+PG G PG +G GIPG+ GLPG G+PG
Sbjct: 1054 LPGREGPRGPEGTPGQPGSSLGVKGEKGERGFPGLDGSSGIPGRSGAVGLPGSQGLPGIR 1113
Query: 74 G 74
G
Sbjct: 1114 G 1114
Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G G G G PG PG DG PG++G+ G+ GK G+ G G G G + D
Sbjct: 2045 AGTPGAIGEGGKPGVPGRDGAPGKDGLPGLNGKQGIAGPVGPQGLKGEQGDS 2096
>gi|326922309|ref|XP_003207392.1| PREDICTED: collagen alpha-1(VI) chain-like [Meleagris gallopavo]
Length = 998
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 29 GRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+ G+DG DG+ GE PGL G G G DG PG+DG PG+ GIPG+ G K
Sbjct: 321 GKRGIDGIDGMKGEAGYPGLPGCKGSPGFDGEPGEDGKPGRQGIPGSPGEK 371
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G G GEPG DG PGR G+ G PG+ G PG G PG G D + GAD
Sbjct: 342 GCKGSPGFDGEPGEDGKPGRQGIPGSPGEKGAPGNRGEPGPLGEIGDEGSPGAD 395
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G GL GE G DG PG NG G PG G G G PG NGTK
Sbjct: 471 GAPGLPGDPGLMGERGEDGPPG-NGTIGFPGAPGQQGDRGDPGINGTK 517
>gi|307604193|gb|ADN68495.1| hypothetical protein [Sorangium cellulosum]
Length = 778
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G DG+DG GEPG DG PG++G DG PG+DG PG G PG + A AD
Sbjct: 32 GAPGKDGQDGADGEPGDDGAPGKDGADGQDGAPGQDGQPGPKGDPGQDAPPQTSAASLAD 91
Query: 86 -----TKSFSDGVLPS 96
+ F+ G LP+
Sbjct: 92 YVKERVEMFAAGALPA 107
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 27/43 (62%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G DG PG+ G DG G G DG PGKDG G+DG PG +G
Sbjct: 26 GAPGEDGAPGKDGQDGADGEPGDDGAPGKDGADGQDGAPGQDG 68
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 26/39 (66%)
Query: 36 RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+DG PGE G G G++G DG PG DG PGKDG G +G
Sbjct: 24 QDGAPGEDGAPGKDGQDGADGEPGDDGAPGKDGADGQDG 62
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGM---DGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G DG G G+ G DG PG +G DG G+DG PG+DG PG G
Sbjct: 26 GAPGEDGAPGKDGQDGADGEPGDDGAPGKDGADGQDGAPGQDGQPGPKGDPGQDAPPQTS 85
Query: 86 TKSFSDGVLPSVQRAIAAGL 105
S +D V V+ A L
Sbjct: 86 AASLADYVKERVEMFAAGAL 105
>gi|17539404|ref|NP_503048.1| Protein COL-138 [Caenorhabditis elegans]
gi|126468453|emb|CAM36330.1| Protein COL-138 [Caenorhabditis elegans]
Length = 281
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK--TDHY 80
G G DGR G PG G G PG+NG DG PGKDG+ G+ G PG +G K DH
Sbjct: 219 GEAGQDGRPGQPGRQGPQGEPGQNGKDGEPGKDGVDGEPGKPGEDGPKGSCDHC 272
>gi|60683013|ref|YP_213157.1| hypothetical protein BF3555 [Bacteroides fragilis NCTC 9343]
gi|60494447|emb|CAH09243.1| putative lipoprotein [Bacteroides fragilis NCTC 9343]
Length = 721
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 31/50 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G DG+DG G G DG G NG DG G DG GKDG+ GTNG+K
Sbjct: 132 VDGTDGTDGKDGENGTDGKDGADGTNGTDGKDGVDGTDGKDGVDGTNGSK 181
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G DG+DG+ G G DG+ G +G DG G++G GKDG GTNGT
Sbjct: 116 GTDGKDGVDGTDGKDGVDGTDGTDGKDGENGTDGKDGADGTNGT 159
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
T+ +G+ G G DG G+ G+DG G++G+DG GKDG+ G DG G +G GA
Sbjct: 94 TIRNGKKGDTGPDGDAGKDGIDGTDGKDGVDGTDGKDGVDGTDGTDGKDGENGTDGKDGA 153
Query: 85 DTKSFSDG 92
D + +DG
Sbjct: 154 DGTNGTDG 161
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I + S I+ R G G G G+ G DGI G +G DG+ DG GKDG+ GT+GT
Sbjct: 85 ISFSQSAPITIRNGKKGDTGPDGDAGKDGIDGTDGKDGV---DGTDGKDGVDGTDGTDGK 141
Query: 79 HYAMGADTKSFSDGV 93
G D K +DG
Sbjct: 142 DGENGTDGKDGADGT 156
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G +G DG G G +G G++G+DG GKDG+ G +G G G
Sbjct: 140 GKDGENGTDGKDGADGTNGTDGKDGVDGTDGKDGVDGTNGSKGEQG 185
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
+G G DG DG G G DG+ G +G DG+ G +G G+ G G N
Sbjct: 145 NGTDGKDGADGTNGTDGKDGVDGTDGKDGVDGTNGSKGEQGDSGQN 190
>gi|268557070|ref|XP_002636524.1| C. briggsae CBR-COL-156 protein [Caenorhabditis briggsae]
Length = 294
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 30/48 (62%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G+DG PG+PG G PG G G PG DG PG+DG PG NG +
Sbjct: 153 GPNGQPGKDGFPGQPGAPGAPGPQGDAGAPGNDGQPGQDGRPGQNGRR 200
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 32/55 (58%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
G PG G DG+PG G +G PGKDG PG+ G PG G + D A G D + DG
Sbjct: 138 GAPGPQGPDGVPGAPGPNGQPGKDGFPGQPGAPGAPGPQGDAGAPGNDGQPGQDG 192
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 29 GRIGLDGR-----DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
GR G +GR G PG PG G PG NG PG+DG PG+ G PG G+ G
Sbjct: 192 GRPGQNGRRGRGTPGAPGAPGATGAPGNNGQ---PGQDGAPGQAGAPGPAGSDGQPGQKG 248
Query: 84 ADTKSFSDGV 93
D + +G+
Sbjct: 249 GDGQPGENGL 258
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL 63
+G G G DG PG+ G DG PG NG+DG+PG DG
Sbjct: 232 AGAPGPAGSDGQPGQKGGDGQPGENGLDGVPGTDGA 267
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGK---DGLPGK--- 66
RR G + G G G +G PG+ PG G PG G DG PG+ DG PG+
Sbjct: 199 RRGRGTPGAPGAPGATGAPGNNGQPGQDGAPGQAGAPGPAGSDGQPGQKGGDGQPGENGL 258
Query: 67 DGIPGTNGT 75
DG+PGT+G
Sbjct: 259 DGVPGTDGA 267
>gi|423251588|ref|ZP_17232601.1| hypothetical protein HMPREF1066_03611 [Bacteroides fragilis
CL03T00C08]
gi|423254910|ref|ZP_17235840.1| hypothetical protein HMPREF1067_02484 [Bacteroides fragilis
CL03T12C07]
gi|392649773|gb|EIY43446.1| hypothetical protein HMPREF1066_03611 [Bacteroides fragilis
CL03T00C08]
gi|392653476|gb|EIY47132.1| hypothetical protein HMPREF1067_02484 [Bacteroides fragilis
CL03T12C07]
Length = 718
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G DG+DG G G DG G NG DG G DG GKDG+ GTNG K
Sbjct: 129 VDGTDGTDGKDGENGTDGKDGANGENGTDGKDGVDGTDGKDGVDGTNGNK 178
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G DG+DG+ G G DG+ G +G DG G++G GKDG G NGT
Sbjct: 113 GTDGKDGVDGTDGKDGVDGTDGTDGKDGENGTDGKDGANGENGT 156
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
T+ +G+ G G DG G+ G+DG G++G+DG GKDG+ G DG G +G GA
Sbjct: 91 TIRNGKKGDTGPDGDAGKDGIDGTDGKDGVDGTDGKDGVDGTDGTDGKDGENGTDGKDGA 150
Query: 85 DTKSFSDG 92
+ ++ +DG
Sbjct: 151 NGENGTDG 158
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
G+DG+ G G DG+ G +G DG+ G DG GKDG GT+G + G D K DG
Sbjct: 107 GKDGIDGTDGKDGVDGTDGKDGVDGTDGTDGKDGENGTDGKDGANGENGTDGKDGVDGT 165
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G DG+DG GE G DG ++G+DG GKDG+ G +G G G
Sbjct: 140 GENGTDGKDGANGENGTDG---KDGVDGTDGKDGVDGTNGNKGEQG 182
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
I + S I+ R G G G G+ G DGI G +G DG+ DG GKDG+ GT+GT
Sbjct: 82 ISFSKSAPITIRNGKKGDTGPDGDAGKDGIDGTDGKDGV---DGTDGKDGVDGTDGT 135
>gi|348511671|ref|XP_003443367.1| PREDICTED: collagen alpha-1(XVIII) chain-like [Oreochromis
niloticus]
Length = 1572
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 33/52 (63%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+GR G+ G DG+ G PGL G PG G +G G+DG PG DG PG G+K D
Sbjct: 851 FNGRPGIGGPDGIQGNPGLPGRPGEKGDEGPAGRDGQPGLDGFPGPPGSKGD 902
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 22 AISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTK 76
A + S G G+DG PG+PGL GIPG +G G PG +G G+ G+PG G K
Sbjct: 740 AETASSSAAFGPPGKDGAPGKPGLPGIPGTDGKPGAPGPNGEKGDAGELGLPGAIGEK 797
Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 12/58 (20%)
Query: 29 GRIGLDGRDGLPGEPGLD---GIPGRNGMDGIPGKDGLP---------GKDGIPGTNG 74
G+ G G+ GLPG PG D G PG NG G G+ GLP G+ G+PGT G
Sbjct: 753 GKDGAPGKPGLPGIPGTDGKPGAPGPNGEKGDAGELGLPGAIGEKGAQGERGLPGTQG 810
>gi|296205053|ref|XP_002749597.1| PREDICTED: collagen alpha-1(III) chain [Callithrix jacchus]
Length = 1465
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 39/72 (54%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A + I G G DG+DG PGEPG +G+PG G G PG G G +G+PG
Sbjct: 442 EPGPRGERGEAGTPGIPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGVPG 501
Query: 72 TNGTKTDHYAMG 83
G + A G
Sbjct: 502 EKGPAGERGAPG 513
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G GIPG G+ G G G NG K + A G
Sbjct: 227 AGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPG 282
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 28 SGRIGLDGRDGLPGEPGLDG---IPG------------RNGMDGIPGKDGLPGKDGIPGT 72
SGR G G GLPG PG+ G IPG RNG G G GL G++G+PG
Sbjct: 233 SGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGE 292
Query: 73 NGT 75
NG
Sbjct: 293 NGA 295
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
GR G G G PG G +G+PG NG G G G P G+ G+PG G + + A G
Sbjct: 268 FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
Query: 84 AD 85
+D
Sbjct: 328 SD 329
>gi|403300300|ref|XP_003940885.1| PREDICTED: collagen alpha-1(III) chain [Saimiri boliviensis
boliviensis]
Length = 1465
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 39/72 (54%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A + I G G DG+DG PGEPG +G+PG G G PG G G +G+PG
Sbjct: 442 EPGPRGERGEAGTPGIPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGVPG 501
Query: 72 TNGTKTDHYAMG 83
G + A G
Sbjct: 502 EKGPAGERGAPG 513
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G GIPG G+ G G G NG K + A G
Sbjct: 227 AGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPG 282
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 28 SGRIGLDGRDGLPGEPGLDG---IPG------------RNGMDGIPGKDGLPGKDGIPGT 72
SGR G G GLPG PG+ G IPG RNG G G GL G++G+PG
Sbjct: 233 SGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGE 292
Query: 73 NGT 75
NG
Sbjct: 293 NGA 295
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
GR G G G PG G +G+PG NG G G G P G+ G+PG G + + A G
Sbjct: 268 FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
Query: 84 AD 85
+D
Sbjct: 328 SD 329
>gi|268577295|ref|XP_002643629.1| C. briggsae CBR-LET-2 protein [Caenorhabditis briggsae]
Length = 1758
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNGTKTD 78
+ G G GR G PG PG DG+PG GM G PG+DGLPG+DG+PG G K D
Sbjct: 1081 LPGIPGKAGRQGAPGSPGQDGLPGFPGMKGEAGYPGQDGLPGRDGLPGVPGMKGD 1135
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLP------GEPGLDGIPGRNGMDGIPGK---DGLPGK 66
+ D+G + + G GLDG+ G+P G+ GL GIPG GMDG PG+ +G PG+
Sbjct: 1133 KGDLGDSGQPGLPGAPGLDGQPGVPGIRGDKGQSGLPGIPGDRGMDGFPGQKGENGYPGQ 1192
Query: 67 DGIPGTNGTK 76
G+PG G K
Sbjct: 1193 PGLPGLAGEK 1202
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 20 GRAISTVI--SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
G++I + SG GL G+DG PG PG G +G++G+PG GL G G+PG G K
Sbjct: 1266 GQSIPGPVGPSGAPGLQGKDGFPGLPGQKG---ESGLNGLPGAPGLKGDAGLPGFPGAKG 1322
Query: 78 DHYAMGADTKSFSDGVLPSV 97
D A G K DG LP V
Sbjct: 1323 DPGANGIPGKRGDDG-LPGV 1341
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 27 ISGRIGLDG--RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
I G GL G + GLPGE GL GIPG+ G G PG PG+DG+PG G K + G
Sbjct: 1061 IKGDAGLPGYGQPGLPGEKGLPGIPGKAGRQGAPGS---PGQDGLPGFPGMKGEAGYPGQ 1117
Query: 85 DTKSFSDGVLPSV 97
D DG LP V
Sbjct: 1118 DGLPGRDG-LPGV 1129
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 36/68 (52%), Gaps = 12/68 (17%)
Query: 28 SGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGK---------DGIPGTNGT 75
+G GL G+ G PGE GL G+PGR G G PG+DGLPG G+PG G
Sbjct: 864 NGLPGLSGQPGYPGEKGDAGLPGVPGREGSPGFPGQDGLPGVPGQKGEDGLPGLPGVTGL 923
Query: 76 KTDHYAMG 83
K D A G
Sbjct: 924 KGDAGAAG 931
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 32/50 (64%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+ GL GRDGLPG PG+ G G +G G+PG GL G+ G+PG G K
Sbjct: 1114 YPGQDGLPGRDGLPGVPGMKGDLGDSGQPGLPGAPGLDGQPGVPGIRGDK 1163
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G GL G G G+PG +GIPG+ G DG+P G+PG+DG PG G K +
Sbjct: 1308 LKGDAGLPGFPGAKGDPGANGIPGKRGDDGLP---GVPGRDGQPGAPGLKGE 1356
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Query: 16 RRDIGRAISTVISGRIGLDG------RDGLPGEPGLDGIPGRNGMDGIPGKDGL------ 63
R D G++ I G G+DG +G PG+PGL G+ G G G PG GL
Sbjct: 1160 RGDKGQSGLPGIPGDRGMDGFPGQKGENGYPGQPGLPGLAGEKGFAGTPGFPGLKGAPGY 1219
Query: 64 PGKDGIPGTNGTKTDH 79
PG+DG+PG G K +
Sbjct: 1220 PGQDGLPGIPGLKGES 1235
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G A +G G G G PG PG DG+PG G+ G G G PG++G+PG +G K
Sbjct: 1197 GLAGEKGFAGTPGFPGLKGAPGYPGQDGLPGIPGLKGESGYPGQPGQEGLPGLSGEK 1253
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G GL G GLPG PG G+ G G+ G+PG G G G+PG NG K +
Sbjct: 927 AGAAGLSGAPGLPGAPGYPGMKGNAGIPGVPGFKGDAGLSGLPGLNGPKGE 977
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK--DGIPGTNGTKTDHYAMGADTKSF 89
GL G+DG +PGLDG PGR G +G+PG G PG +G+PG G + G D +
Sbjct: 460 GLPGKDG---KPGLDGAPGRKGENGLPGVRGPPGDSLNGLPGAPGPRGAPGPKGYDGRDG 516
Query: 90 SDGV 93
+G+
Sbjct: 517 VNGL 520
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
I G G G G+PG+ G+DG PG+ G +G PG+ GLPG G G GT GA
Sbjct: 1159 IRGDKGQSGLPGIPGDRGMDGFPGQKGENGYPGQPGLPGLAGEKGFAGTPGFPGLKGAPG 1218
Query: 87 KSFSDGV 93
DG+
Sbjct: 1219 YPGQDGL 1225
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 28/50 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL G PG G DG+PG GL G+ G PG G +
Sbjct: 1195 LPGLAGEKGFAGTPGFPGLKGAPGYPGQDGLPGIPGLKGESGYPGQPGQE 1244
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 18/70 (25%)
Query: 27 ISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKD---------------GLPGKDG 68
+ G GL+G+ G PG PGL +G+PG +G G PG+ G PG+DG
Sbjct: 842 LPGAPGLEGQRGFPGAPGLKGENGLPGLSGQPGYPGEKGDAGLPGVPGREGSPGFPGQDG 901
Query: 69 IPGTNGTKTD 78
+PG G K +
Sbjct: 902 LPGVPGQKGE 911
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 34/74 (45%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G+ + + G IG G G PG PGL GI G G+ G PG G PG G PG G +
Sbjct: 1346 GQPGAPGLKGEIGGAGLPGQPGFPGLPGIKGEGGLPGFPGAKGEPGFPGSPGAPGYAGEK 1405
Query: 80 YAMGADTKSFSDGV 93
G DG+
Sbjct: 1406 GDGGLPGLPGRDGL 1419
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 30/52 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G G G DGLPG PG DG PG G+ G G GLPG+ G PG G K +
Sbjct: 1326 ANGIPGKRGDDGLPGVPGRDGQPGAPGLKGEIGGAGLPGQPGFPGLPGIKGE 1377
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
PG+PGL G+PG G G PG+ G G+ G PG G K D
Sbjct: 727 PGQPGLPGLPGTKGESGFPGRPGEVGQPGFPGLPGMKGDS 766
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 36/74 (48%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G+ + G G G GLPG PGL+G G G G+ G++GLPG G PG G K D
Sbjct: 823 GQPGAPGFPGLKGDAGLPGLPGAPGLEGQRGFPGAPGLKGENGLPGLSGQPGYPGEKGDA 882
Query: 80 YAMGADTKSFSDGV 93
G + S G
Sbjct: 883 GLPGVPGREGSPGF 896
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 30 RIGLDGRDGLPGEPGLDGIPGRNGMDGIP-----------GKDGLPGKDGIPGTNGTKTD 78
R G G GLPG+PGL G G +G+ G+P G+ GLPG+ G+PG G
Sbjct: 1031 RDGQKGEAGLPGQPGLRGPAGPSGLPGVPGIKGDAGLPGYGQPGLPGEKGLPGIPGKAGR 1090
Query: 79 HYAMGA 84
A G+
Sbjct: 1091 QGAPGS 1096
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 27 ISGRIGLDGRDGLPG--------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+SG+ G DG GLPG +PG G PG G G+PG G PG G+PG
Sbjct: 662 LSGKPGQDGLPGLPGNKGEAGYGQPGQPGFPGTKGEAGLPGLPGTPGLQGLPG 714
>gi|348530964|ref|XP_003452980.1| PREDICTED: collagen alpha-1(IV) chain-like [Oreochromis niloticus]
Length = 1702
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 23 ISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
++ + G GL GR+GLPG+PG DGIPGR+G G PG G P ++GI G
Sbjct: 568 VAPGLKGDKGLPGRNGLPGQPGQDGIPGRDGPPGFPGLKGEPAREGIKG 616
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 37/74 (50%), Gaps = 22/74 (29%)
Query: 27 ISGRIGLDGRDGLPGEPGL----------------------DGIPGRNGMDGIPGKDGLP 64
ISG+ G GR G G PGL G+PGRNG+ G PG+DG+P
Sbjct: 535 ISGQPGQPGRPGAQGNPGLRGAPGAVGEPGDIFVAPGLKGDKGLPGRNGLPGQPGQDGIP 594
Query: 65 GKDGIPGTNGTKTD 78
G+DG PG G K +
Sbjct: 595 GRDGPPGFPGLKGE 608
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G G G PG PG G PG G G PG+DG PG+ G+ G +G K D G D
Sbjct: 1133 GDQGSSGYQGQPGRPGDKGTPGLPGFVGEPGQDGRPGETGLQGPSGPKGDKGDSGRD 1189
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G IG G GLPG G G+PG+ G G+ G G G++G PG NG
Sbjct: 1387 FIKGDIGFPGNQGLPGPQGPSGLPGQKGDRGVTGFPGPKGEEGFPGYNG 1435
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGL--DGIPGRNGMDGIPG------------KD 61
+ D+G G G G GLPGEPG+ G PG+ G G PG ++
Sbjct: 1061 KGDLGTPGHPGFRGTDGEKGETGLPGEPGIGIPGFPGQKGQTGEPGFQGPAGDKGQKGQE 1120
Query: 62 GLPGKDGIPGTNG 74
G+PGK G+PG G
Sbjct: 1121 GMPGKPGLPGPKG 1133
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGI----PGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G+ G G G PG PG G PG G GI PG G PG G PG G K D+ G
Sbjct: 645 GQTGDKGSQGNPGVPGYPGRPGEKGEPGIGVSTPGPQGAPGPRGEPGREGPKGDNGLPGD 704
Query: 85 D 85
D
Sbjct: 705 D 705
>gi|225870947|ref|YP_002746894.1| collagen-binding collagen-like surface-anchored protein FneF
[Streptococcus equi subsp. equi 4047]
gi|225700351|emb|CAW94669.1| putative collagen-binding collagen-like surface-anchored protein
FneF [Streptococcus equi subsp. equi 4047]
Length = 516
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
G G DG+DG PGE G GIPG G DG KDG PG+DG PG G K D G D K
Sbjct: 327 GEPGKDGQDGKPGEKGEPGIPGPKGEDG---KDGAPGRDGQPGPKGEKGDPGKDGQDGK 382
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+ G GRDG PG G G PG++G DG PG+ G PG+DG G G +
Sbjct: 354 GKDGAPGRDGQPGPKGEKGDPGKDGQDGKPGEKGDPGRDGKDGEKGER 401
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 27/47 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G G G PG+ G DG PG G GIPG G GKDG PG +G
Sbjct: 317 TGERGPQGEKGEPGKDGQDGKPGEKGEPGIPGPKGEDGKDGAPGRDG 363
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 29 GRIGLDGRDGLPGEPGL---------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G+ G DG+ G GEPG+ DG PGR+G G G+ G PGKDG G G K D
Sbjct: 330 GKDGQDGKPGEKGEPGIPGPKGEDGKDGAPGRDGQPGPKGEKGDPGKDGQDGKPGEKGD 388
>gi|167534461|ref|XP_001748906.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772586|gb|EDQ86236.1| predicted protein [Monosiga brevicollis MX1]
Length = 2847
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 40/70 (57%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D DI + + T G G GRDG PG G+ G+ G G DG+ G DGLPG+DG PG G
Sbjct: 1409 DNIDILQLLCTGYDGVDGTPGRDGTPGRDGVKGVAGDAGEDGLRGTDGLPGRDGTPGPRG 1468
Query: 75 TKTDHYAMGA 84
K + A G+
Sbjct: 1469 DKGEEGAPGS 1478
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 37/67 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G+DGRDG G PG G GR G DG G G+PG+ G PG NG D+ A GA
Sbjct: 2006 VDGDAGVDGRDGTSGAPGEKGQKGRAGRDGRDGFKGMPGRKGEPGLNGDMGDNGADGAPG 2065
Query: 87 KSFSDGV 93
SDG
Sbjct: 2066 DDASDGA 2072
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 18 DIGRAISTVISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
D GR T I G G DGR+G +PG PG DG PG G DG PG+ G+PG DG G
Sbjct: 1814 DRGRPGETGIGGVSGTDGREGAKGDTGMPGRPGDDGTPGTPGADGRPGRPGVPGVDGRKG 1873
Query: 72 TNGTKTDHYAMGADTKSFSDG 92
+G A GA+ + S G
Sbjct: 1874 MDGVPGQPGAKGAEGDAGSPG 1894
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 29/48 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G DG DG PG PG G GR G DG+ G+DG+PG G PG G K
Sbjct: 177 GPAGFDGTDGAPGNPGAQGPKGRAGTDGLDGRDGIPGTPGTPGARGDK 224
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G DGRDG G+PG G PG NG G PG G PG DG G G K AMG D
Sbjct: 2290 GMPGRDGRDGNKGQPGAPGAPGANGNKGQPGDVGTPGLDGDDGEKGAKG---AMGPD 2343
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 39/79 (49%), Gaps = 18/79 (22%)
Query: 10 VLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL------ 63
E D D+GR G GL G DG PG G G GR+ +DG PG+DGL
Sbjct: 632 CSETPDDGDVGR------PGDRGLPGPDGRPGPQGRKGYKGRDAVDGTPGEDGLPGPAGD 685
Query: 64 ------PGKDGIPGTNGTK 76
PG+DG+ GT+G K
Sbjct: 686 SGFPGYPGRDGLDGTDGAK 704
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 28 SGRIGLDGRDGLPGEPGL------------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+G GLDGRDG+PG PG G+PG NG DG G DG G+DG G G
Sbjct: 200 AGTDGLDGRDGIPGTPGTPGARGDKGRTGETGLPGPNGDDGFHGTDGTNGRDGAAGPKGQ 259
Query: 76 KTDHYAMG 83
+ D G
Sbjct: 260 RGDDGNTG 267
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG---KDGIPGTNGTK 76
GR G DGRDG G PG G PG NG G G DG PG DG PG+ G K
Sbjct: 2029 GRAGRDGRDGFKGMPGRKGEPGLNGDMGDNGADGAPGDDASDGAPGSRGPK 2079
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 18/80 (22%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL------------------PGKDG 68
G GL GR G PG G G PGRNG G G+DGL G+DG
Sbjct: 2378 AKGDAGLTGRPGRPGPDGTPGTPGRNGFKGRAGEDGLDGDNGDVGFPGFTGAKGNAGRDG 2437
Query: 69 IPGTNGTKTDHYAMGADTKS 88
+PG +G D+ A GA ++
Sbjct: 2438 VPGADGADGDNGARGAKGRT 2457
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPG---KDGLPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G DG+ G PG DG PGR+G+ G+ G +DGL G DG+PG +GT G + S
Sbjct: 1420 GYDGVDGTPGRDGTPGRDGVKGVAGDAGEDGLRGTDGLPGRDGTPGPRGDKGEEGAPGSP 1479
Query: 92 GV 93
GV
Sbjct: 1480 GV 1481
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G G DG PG PG+ G+ GR GMDG+PG+ G G +G G+ G + G D
Sbjct: 1849 GTPGTPGADGRPGRPGVPGVDGRKGMDGVPGQPGAKGAEGDAGSPGPQGPKGVAGRD 1905
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGM------DGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
GR G DGRDG PG+ G+DG PGR G G G+DG G+DG G G K +
Sbjct: 2539 GRSGRDGRDGAPGDDGIDGRPGRKGQRGSTGPQGEAGEDGADGRDGAMGFTGDKGNSGVP 2598
Query: 83 GAD 85
G D
Sbjct: 2599 GRD 2601
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR ++G +G +G DG PG+ DG PG G G PG+DG G G+PG G + D
Sbjct: 2044 GRKGEPGLNGDMGDNGADGAPGDDASDGAPGSRGPKGAPGRDGGMGAKGMPGPAGERGD 2102
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDH 79
G G G G PG PGLDG GR G DG PG+ GLP G+ G PG G K D
Sbjct: 378 GDKGERGDTGGPGVPGLDGTVGRKGYDGRPGETGLPGVKGEPGFPGPQGPKGDQ 431
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPG---RNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
GR G GRD + G PG DG+PG +G G PG+DGL G DG G G A G
Sbjct: 660 GRKGYKGRDAVDGTPGEDGLPGPAGDSGFPGYPGRDGLDGTDGAKGNTGQPGRTGAPGPR 719
Query: 86 TKSFSDGV 93
+ DG
Sbjct: 720 GRDGQDGA 727
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
GR G G+ GLDG+PG +G DG PG +G G+ G PG G K +G D
Sbjct: 1105 GRQGPKGQSGLDGVPGTDGDDGAPGDNGSDGRPGRPGPQGEKGRRGPVGDD 1155
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G GL G DGLPG G G G G +G PG G+PG+DG G G K G D +
Sbjct: 1446 AGEDGLRGTDGLPGRDGTPGPRGDKGEEGAPGSPGVPGRDGTSGRPGPKGRTGPAGDDGR 1505
Query: 88 SFSDGV 93
++G
Sbjct: 1506 DGTNGA 1511
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
D+ I+ +I + +GRDG+PG G PG +G DG+ G G G G PGT+G +
Sbjct: 983 DLSSFINQIIGQILDCEGRDGVPGP---KGKPGDDGTDGLNGARGDAGAPGRPGTDGARG 1039
Query: 78 DHYAMGADTKSFSDGV 93
D A GA SDG
Sbjct: 1040 DAGAPGARGFDGSDGA 1055
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMD---GIPGKDGLPGKD 67
G +G DG DG+PG G DG+PG G D G PG+ GLPG D
Sbjct: 1150 GPVGDDGTDGVPGRDGTDGVPGPRGPDGDKGAPGRPGLPGAD 1191
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 30/49 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+GR GLDG DG+ G+ GL G G G+ G PG+ G G G PG NG K
Sbjct: 2358 TGRPGLDGTDGVDGDRGLPGAKGDAGLTGRPGRPGPDGTPGTPGRNGFK 2406
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 15 DRRDIGRAISTVI---SGRIGLDGRDGLP------GEPGLDGIPGRNGMDGIPGKDGLPG 65
D + GRA T + +G GLDG DG P G G DG GR G G+PG DG G
Sbjct: 262 DDGNTGRAGETGLPGPAGSDGLDGTDGAPGPRGDKGRTGPDGDKGRQGETGLPGPDGDSG 321
Query: 66 KDGIPGTNGTKTDHYAMG 83
+DG G G + D + G
Sbjct: 322 RDGTDGLPGARGDDGSRG 339
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G +G G G G PG DGIPGR+G+DG G G+ G G+PG G + + G D
Sbjct: 90 GSVGETGSPGPVGAPGEDGIPGRDGVDGTDGPKGIKGIQGMPGPMGPRGEDGYDGTD 146
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
Query: 9 QVLEVHDRRDI----GRAISTVISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIP 58
Q+L+ R + G+ G G G G PG PG DG PG G DG
Sbjct: 994 QILDCEGRDGVPGPKGKPGDDGTDGLNGARGDAGAPGRPGTDGARGDAGAPGARGFDGSD 1053
Query: 59 GKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGVLPSVQRAIAAG 104
G DG G G PG G K + MGA + DG S R +AG
Sbjct: 1054 GADGDNGDMGFPGFRGPKGNAGPMGAPGLNGRDGTDGSTGRKGSAG 1099
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 27/48 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G DG G G DG+PG G DG G+ G PG G PGT G K
Sbjct: 309 GETGLPGPDGDSGRDGTDGLPGARGDDGSRGRPGRPGPAGRPGTPGIK 356
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 27 ISGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGK---DGLPGKDGIPGTNGTKTDHY 80
+ GR G+DG G PG G +G PG G G+ G+ DG PG+DG PG G K
Sbjct: 1868 VDGRKGMDGVPGQPGAKGAEGDAGSPGPQGPKGVAGRDGEDGTPGRDGAPGPAGRKGAKG 1927
Query: 81 AMGA 84
A GA
Sbjct: 1928 ADGA 1931
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---------DGLPGK---DGIPGTNG 74
+ G G DG DG PG+ G DG PGR G G G+ DG+PG+ DG+PG G
Sbjct: 1115 LDGVPGTDGDDGAPGDNGSDGRPGRPGPQGEKGRRGPVGDDGTDGVPGRDGTDGVPGPRG 1174
Query: 75 TKTDHYAMG 83
D A G
Sbjct: 1175 PDGDKGAPG 1183
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 19 IGRAISTVISGRIGLDGRDGLP---------GEPGLDGIPGRNGMDGIP---GKDGLPGK 66
G A + G GL GRDG P G PG G+PGR+G G P G+ G G
Sbjct: 1443 AGDAGEDGLRGTDGLPGRDGTPGPRGDKGEEGAPGSPGVPGRDGTSGRPGPKGRTGPAGD 1502
Query: 67 DGIPGTNGTKTDHYAMG 83
DG GTNG D A G
Sbjct: 1503 DGRDGTNGADGDVGAKG 1519
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIP------GKDGLPGKDGIPGTN 73
G G GR G G+ G DG+PGR+G DG+P G G PG+ G+PG +
Sbjct: 1141 GPQGEKGRRGPVGDDGTDGVPGRDGTDGVPGPRGPDGDKGAPGRPGLPGAD 1191
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G IG DG DG G PG G+PG G+DG DG+ G+DG G G K
Sbjct: 2209 GAIGNDGEDGDSGAPGETGLPGPRGLDGT---DGMNGRDGTAGPRGDK 2253
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Query: 27 ISGRIGLDGRDGLPGEPG------LDGIPGRNGMDGIPGK---DGLPGKDGIPGTNGT 75
GR G DG G PG+ G DG PG G G G+ DGL G+DGIPGT GT
Sbjct: 160 AKGRSGQDGARGRPGDQGPAGFDGTDGAPGNPGAQGPKGRAGTDGLDGRDGIPGTPGT 217
>gi|443719577|gb|ELU09672.1| hypothetical protein CAPTEDRAFT_226148 [Capitella teleta]
Length = 314
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 31/45 (68%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GLDG G+PGE G+DG G G G G GLPGKDG+PG++G K
Sbjct: 93 GLDGMPGVPGERGMDGSTGEPGQRGAKGDRGLPGKDGLPGSDGLK 137
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 32/58 (55%), Gaps = 15/58 (25%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDG---------------IPGKDGLPGKDGIPGTNG 74
GL G DGLPG G+ G+PG GMDG +PGKDGLPG DG+ G G
Sbjct: 84 GLRGEDGLPGLDGMPGVPGERGMDGSTGEPGQRGAKGDRGLPGKDGLPGSDGLKGAKG 141
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 37 DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
+GL GE DG+PG +GM G+PG+ G+ G G PG G K D G D SDG+
Sbjct: 83 EGLRGE---DGLPGLDGMPGVPGERGMDGSTGEPGQRGAKGDRGLPGKDGLPGSDGL 136
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G+DG G PG+ G G G G DG+PG DGL G G T GT T
Sbjct: 100 VPGERGMDGSTGEPGQRGAKGDRGLPGKDGLPGSDGLKGAKGDAAT-GTCTQ 150
>gi|423285460|ref|ZP_17264342.1| hypothetical protein HMPREF1204_03880 [Bacteroides fragilis HMW
615]
gi|404578975|gb|EKA83693.1| hypothetical protein HMPREF1204_03880 [Bacteroides fragilis HMW
615]
Length = 718
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G DG+DG G G DG G NG DG G DG GKDG+ GTNG K
Sbjct: 129 VDGTDGTDGKDGENGTDGKDGADGTNGTDGKDGVDGTDGKDGVDGTNGNK 178
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G DG+DG+ G G DG+ G +G DG G++G GKDG GTNGT
Sbjct: 113 GTDGKDGVDGTDGKDGVDGTDGTDGKDGENGTDGKDGADGTNGT 156
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
T+ +G+ G G DG G+ G+DG G++G+DG GKDG+ G DG G +G GA
Sbjct: 91 TIRNGKKGDTGPDGDAGKDGIDGTDGKDGVDGTDGKDGVDGTDGTDGKDGENGTDGKDGA 150
Query: 85 DTKSFSDG 92
D + +DG
Sbjct: 151 DGTNGTDG 158
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I + S I+ R G G G G+ G DGI G +G DG+ DG GKDG+ GT+GT
Sbjct: 82 ISFSKSAPITIRNGKKGDTGPDGDAGKDGIDGTDGKDGV---DGTDGKDGVDGTDGTDGK 138
Query: 79 HYAMGADTKSFSDGV 93
G D K +DG
Sbjct: 139 DGENGTDGKDGADGT 153
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
+G G DG DG G G DG+ G +G DG+ G +G G+ G PG N
Sbjct: 142 NGTDGKDGADGTNGTDGKDGVDGTDGKDGVDGTNGNKGEQGDPGQN 187
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G +G DG G G +G G++G+DG GKDG+ G +G G G
Sbjct: 137 GKDGENGTDGKDGADGTNGTDGKDGVDGTDGKDGVDGTNGNKGEQG 182
>gi|355565034|gb|EHH21523.1| hypothetical protein EGK_04613 [Macaca mulatta]
Length = 1466
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 38/72 (52%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A + G G DG+DG PGEPG +G+PG G G PG G G +GIPG
Sbjct: 442 EPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 501
Query: 72 TNGTKTDHYAMG 83
G D A G
Sbjct: 502 EKGPAGDRGAPG 513
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 28 SGRIGLDGRDGLPGEPGLDG---IPG------------RNGMDGIPGKDGLPGKDGIPGT 72
SGR G G GLPG PG+ G IPG RNG G G GL G++G+PG
Sbjct: 233 SGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGE 292
Query: 73 NGT 75
NG
Sbjct: 293 NGA 295
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 28/52 (53%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G GR G PGE GL G PG G GIPG G+ G G G NG K + A G
Sbjct: 231 GESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPG 282
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
GR G G G PG G +G+PG NG G G G P G+ G+PG G + + A G
Sbjct: 268 FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
Query: 84 AD 85
+D
Sbjct: 328 SD 329
>gi|423270395|ref|ZP_17249366.1| hypothetical protein HMPREF1079_02448 [Bacteroides fragilis
CL05T00C42]
gi|423275373|ref|ZP_17254318.1| hypothetical protein HMPREF1080_02971 [Bacteroides fragilis
CL05T12C13]
gi|392698319|gb|EIY91501.1| hypothetical protein HMPREF1079_02448 [Bacteroides fragilis
CL05T00C42]
gi|392702854|gb|EIY95999.1| hypothetical protein HMPREF1080_02971 [Bacteroides fragilis
CL05T12C13]
Length = 718
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G DG+DG G G DG G NG DG G DG GKDG+ GTNG K
Sbjct: 129 VDGTDGTDGKDGENGTDGKDGADGTNGTDGKDGVDGTDGKDGVDGTNGNK 178
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G DG+DG+ G G DG+ G +G DG G++G GKDG GTNGT
Sbjct: 113 GTDGKDGVDGTDGKDGVDGTDGTDGKDGENGTDGKDGADGTNGT 156
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
T+ +G+ G G DG G+ G+DG G++G+DG GKDG+ G DG G +G GA
Sbjct: 91 TIRNGKKGDTGPDGDAGKDGIDGTDGKDGVDGTDGKDGVDGTDGTDGKDGENGTDGKDGA 150
Query: 85 DTKSFSDG 92
D + +DG
Sbjct: 151 DGTNGTDG 158
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I + S I+ R G G G G+ G DGI G +G DG+ DG GKDG+ GT+GT
Sbjct: 82 ISFSKSAPITIRNGKKGDTGPDGDAGKDGIDGTDGKDGV---DGTDGKDGVDGTDGTDGK 138
Query: 79 HYAMGADTKSFSDGV 93
G D K +DG
Sbjct: 139 DGENGTDGKDGADGT 153
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
+G G DG DG G G DG+ G +G DG+ G +G G+ G PG N
Sbjct: 142 NGTDGKDGADGTNGTDGKDGVDGTDGKDGVDGTNGNKGEQGDPGQN 187
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G +G DG G G +G G++G+DG GKDG+ G +G G G
Sbjct: 137 GKDGENGTDGKDGADGTNGTDGKDGVDGTDGKDGVDGTNGNKGEQG 182
>gi|383116078|ref|ZP_09936831.1| hypothetical protein BSHG_3123 [Bacteroides sp. 3_2_5]
gi|382973989|gb|EES85691.2| hypothetical protein BSHG_3123 [Bacteroides sp. 3_2_5]
Length = 718
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G DG+DG G G DG G NG DG G DG GKDG+ GTNG K
Sbjct: 129 VDGTDGTDGKDGENGTDGKDGADGTNGTDGKDGVDGTDGKDGVDGTNGNK 178
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G DG+DG+ G G DG+ G +G DG G++G GKDG GTNGT
Sbjct: 113 GTDGKDGVDGTDGKDGVDGTDGTDGKDGENGTDGKDGADGTNGT 156
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
T+ +G+ G G DG G+ G+DG G++G+DG GKDG+ G DG G +G GA
Sbjct: 91 TIRNGKKGDTGPDGDAGKDGIDGTDGKDGVDGTDGKDGVDGTDGTDGKDGENGTDGKDGA 150
Query: 85 DTKSFSDG 92
D + +DG
Sbjct: 151 DGTNGTDG 158
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I + S I+ R G G G G+ G DGI G +G DG+ DG GKDG+ GT+GT
Sbjct: 82 ISFSKSAPITIRNGKKGDTGPDGDAGKDGIDGTDGKDGV---DGTDGKDGVDGTDGTDGK 138
Query: 79 HYAMGADTKSFSDGV 93
G D K +DG
Sbjct: 139 DGENGTDGKDGADGT 153
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
+G G DG DG G G DG+ G +G DG+ G +G G+ G PG N
Sbjct: 142 NGTDGKDGADGTNGTDGKDGVDGTDGKDGVDGTNGNKGEQGDPGQN 187
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G +G DG G G +G G++G+DG GKDG+ G +G G G
Sbjct: 137 GKDGENGTDGKDGADGTNGTDGKDGVDGTDGKDGVDGTNGNKGEQG 182
>gi|336410620|ref|ZP_08591096.1| hypothetical protein HMPREF1018_03113 [Bacteroides sp. 2_1_56FAA]
gi|335944195|gb|EGN06019.1| hypothetical protein HMPREF1018_03113 [Bacteroides sp. 2_1_56FAA]
Length = 718
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G DG+DG G G DG G NG DG G DG GKDG+ GTNG K
Sbjct: 129 VDGTDGTDGKDGENGTDGKDGADGTNGTDGKDGVDGTDGKDGVDGTNGNK 178
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G DG+DG+ G G DG+ G +G DG G++G GKDG GTNGT
Sbjct: 113 GTDGKDGVDGTDGKDGVDGTDGTDGKDGENGTDGKDGADGTNGT 156
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
T+ +G+ G G DG G+ G+DG G++G+DG GKDG+ G DG G +G GA
Sbjct: 91 TIRNGKKGDTGPDGDAGKDGIDGTDGKDGVDGTDGKDGVDGTDGTDGKDGENGTDGKDGA 150
Query: 85 DTKSFSDG 92
D + +DG
Sbjct: 151 DGTNGTDG 158
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I + S I+ R G G G G+ G DGI G +G DG+ DG GKDG+ GT+GT
Sbjct: 82 ISFSKSAPITIRNGKKGDTGPDGDAGKDGIDGTDGKDGV---DGTDGKDGVDGTDGTDGK 138
Query: 79 HYAMGADTKSFSDGV 93
G D K +DG
Sbjct: 139 DGENGTDGKDGADGT 153
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
+G G DG DG G G DG+ G +G DG+ G +G G+ G PG N
Sbjct: 142 NGTDGKDGADGTNGTDGKDGVDGTDGKDGVDGTNGNKGEQGDPGQN 187
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G +G DG G G +G G++G+DG GKDG+ G +G G G
Sbjct: 137 GKDGENGTDGKDGADGTNGTDGKDGVDGTDGKDGVDGTNGNKGEQG 182
>gi|423260453|ref|ZP_17241375.1| hypothetical protein HMPREF1055_03652 [Bacteroides fragilis
CL07T00C01]
gi|423266587|ref|ZP_17245589.1| hypothetical protein HMPREF1056_03276 [Bacteroides fragilis
CL07T12C05]
gi|387775007|gb|EIK37116.1| hypothetical protein HMPREF1055_03652 [Bacteroides fragilis
CL07T00C01]
gi|392699819|gb|EIY92988.1| hypothetical protein HMPREF1056_03276 [Bacteroides fragilis
CL07T12C05]
Length = 718
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G DG+DG G G DG G NG DG G DG GKDG+ GTNG K
Sbjct: 129 VDGTDGTDGKDGENGTDGKDGANGTNGTDGKDGVDGTDGKDGVDGTNGNK 178
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G DG+DG+ G G DG+ G +G DG G++G GKDG GTNGT
Sbjct: 113 GTDGKDGVDGTDGKDGVDGTDGTDGKDGENGTDGKDGANGTNGT 156
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
G+DG+ G G DG+ G +G DG+ G DG GKDG GT+G + G D K DG
Sbjct: 107 GKDGIDGTDGKDGVDGTDGKDGVDGTDGTDGKDGENGTDGKDGANGTNGTDGKDGVDGT 165
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIP---GTNGTKTDHYA 81
T+ +G+ G G DG G+ G+DG G++G+DG GKDG+ G DG G NGT A
Sbjct: 91 TIRNGKKGDTGPDGDVGKDGIDGTDGKDGVDGTDGKDGVDGTDGTDGKDGENGTDGKDGA 150
Query: 82 MGADTKSFSDGV 93
G + DGV
Sbjct: 151 NGTNGTDGKDGV 162
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G +G DG G G +G G++G+DG GKDG+ G +G G G
Sbjct: 137 GKDGENGTDGKDGANGTNGTDGKDGVDGTDGKDGVDGTNGNKGEQG 182
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I + S I+ R G G G G+ G DGI G +G DG+ DG GKDG+ GT+GT
Sbjct: 82 ISFSKSAPITIRNGKKGDTGPDGDVGKDGIDGTDGKDGV---DGTDGKDGVDGTDGTDGK 138
Query: 79 HYAMGADTKSFSDGV 93
G D K ++G
Sbjct: 139 DGENGTDGKDGANGT 153
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
+G G DG +G G G DG+ G +G DG+ G +G G+ G PG N
Sbjct: 142 NGTDGKDGANGTNGTDGKDGVDGTDGKDGVDGTNGNKGEQGDPGQN 187
>gi|265766900|ref|ZP_06094729.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263253277|gb|EEZ24753.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 721
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G DG+DG G G DG G NG DG G DG GKDG+ GTNG K
Sbjct: 132 VDGTDGTDGKDGENGTDGKDGADGTNGTDGKDGVDGTDGKDGVDGTNGNK 181
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G DG+DG+ G G DG+ G +G DG G++G GKDG GTNGT
Sbjct: 116 GTDGKDGVDGTDGKDGVDGTDGTDGKDGENGTDGKDGADGTNGT 159
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
T+ +G+ G G DG G+ G+DG G++G+DG GKDG+ G DG G +G GA
Sbjct: 94 TIRNGKKGDTGPDGDAGKDGIDGTDGKDGVDGTDGKDGVDGTDGTDGKDGENGTDGKDGA 153
Query: 85 DTKSFSDG 92
D + +DG
Sbjct: 154 DGTNGTDG 161
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I + S I+ R G G G G+ G DGI G +G DG+ DG GKDG+ GT+GT
Sbjct: 85 ISFSKSAPITIRNGKKGDTGPDGDAGKDGIDGTDGKDGV---DGTDGKDGVDGTDGTDGK 141
Query: 79 HYAMGADTKSFSDGV 93
G D K +DG
Sbjct: 142 DGENGTDGKDGADGT 156
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
+G G DG DG G G DG+ G +G DG+ G +G G+ G PG N
Sbjct: 145 NGTDGKDGADGTNGTDGKDGVDGTDGKDGVDGTNGNKGEQGDPGQN 190
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G +G DG G G +G G++G+DG GKDG+ G +G G G
Sbjct: 140 GKDGENGTDGKDGADGTNGTDGKDGVDGTDGKDGVDGTNGNKGEQG 185
>gi|53715051|ref|YP_101043.1| hypothetical protein BF3767 [Bacteroides fragilis YCH46]
gi|52217916|dbj|BAD50509.1| hypothetical protein [Bacteroides fragilis YCH46]
Length = 721
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G DG+DG G G DG G NG DG G DG GKDG+ GTNG K
Sbjct: 132 VDGTDGTDGKDGENGTDGKDGANGTNGTDGKDGVDGTDGKDGVDGTNGNK 181
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G DG+DG+ G G DG+ G +G DG G++G GKDG GTNGT
Sbjct: 116 GTDGKDGVDGTDGKDGVDGTDGTDGKDGENGTDGKDGANGTNGT 159
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
T+ +G+ G G DG G+ G+DG G++G+DG GKDG+ G DG G +G
Sbjct: 94 TIRNGKKGDTGPDGDAGKDGIDGTDGKDGVDGTDGKDGVDGTDGTDGKDG 143
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
G+DG+ G G DG+ G +G DG+ G DG GKDG GT+G + G D K DG
Sbjct: 110 GKDGIDGTDGKDGVDGTDGKDGVDGTDGTDGKDGENGTDGKDGANGTNGTDGKDGVDGT 168
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
I + S I+ R G G G G+ G DGI G +G DG+ DG GKDG+ GT+GT
Sbjct: 85 ISFSKSAPITIRNGKKGDTGPDGDAGKDGIDGTDGKDGV---DGTDGKDGVDGTDGT 138
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G +G DG G G +G G++G+DG GKDG+ G +G G G
Sbjct: 140 GKDGENGTDGKDGANGTNGTDGKDGVDGTDGKDGVDGTNGNKGEQG 185
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
+G G DG +G G G DG+ G +G DG+ G +G G+ G PG N
Sbjct: 145 NGTDGKDGANGTNGTDGKDGVDGTDGKDGVDGTNGNKGEQGDPGQN 190
>gi|375359797|ref|YP_005112569.1| putative lipoprotein [Bacteroides fragilis 638R]
gi|301164478|emb|CBW24036.1| putative lipoprotein [Bacteroides fragilis 638R]
Length = 721
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G DG+DG G G DG G NG DG G DG GKDG+ GTNG K
Sbjct: 132 VDGTDGTDGKDGENGTDGKDGADGTNGTDGKDGVDGTDGKDGVDGTNGNK 181
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G DG+DG+ G G DG+ G +G DG G++G GKDG GTNGT
Sbjct: 116 GTDGKDGVDGTDGKDGVDGTDGTDGKDGENGTDGKDGADGTNGT 159
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
T+ +G+ G G DG G+ G+DG G++G+DG GKDG+ G DG G +G GA
Sbjct: 94 TIRNGKKGDTGPDGDAGKDGIDGTDGKDGVDGTDGKDGVDGTDGTDGKDGENGTDGKDGA 153
Query: 85 DTKSFSDG 92
D + +DG
Sbjct: 154 DGTNGTDG 161
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I + S I+ R G G G G+ G DGI G +G DG+ DG GKDG+ GT+GT
Sbjct: 85 ISFSKSAPITIRNGKKGDTGPDGDAGKDGIDGTDGKDGV---DGTDGKDGVDGTDGTDGK 141
Query: 79 HYAMGADTKSFSDGV 93
G D K +DG
Sbjct: 142 DGENGTDGKDGADGT 156
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
+G G DG DG G G DG+ G +G DG+ G +G G+ G PG N
Sbjct: 145 NGTDGKDGADGTNGTDGKDGVDGTDGKDGVDGTNGNKGEQGDPGQN 190
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G +G DG G G +G G++G+DG GKDG+ G +G G G
Sbjct: 140 GKDGENGTDGKDGADGTNGTDGKDGVDGTDGKDGVDGTNGNKGEQG 185
>gi|388453085|ref|NP_001252968.1| collagen alpha-1(III) chain precursor [Macaca mulatta]
gi|355750688|gb|EHH55015.1| hypothetical protein EGM_04140 [Macaca fascicularis]
gi|383408209|gb|AFH27318.1| collagen alpha-1(III) chain preproprotein [Macaca mulatta]
gi|384945312|gb|AFI36261.1| collagen alpha-1(III) chain preproprotein [Macaca mulatta]
Length = 1466
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 38/72 (52%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A + G G DG+DG PGEPG +G+PG G G PG G G +GIPG
Sbjct: 442 EPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 501
Query: 72 TNGTKTDHYAMG 83
G D A G
Sbjct: 502 EKGPAGDRGAPG 513
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G GIPG G+ G G G NG K + A G
Sbjct: 227 AGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPG 282
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 28 SGRIGLDGRDGLPGEPGLDG---IPG------------RNGMDGIPGKDGLPGKDGIPGT 72
SGR G G GLPG PG+ G IPG RNG G G GL G++G+PG
Sbjct: 233 SGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGE 292
Query: 73 NGT 75
NG
Sbjct: 293 NGA 295
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
GR G G G PG G +G+PG NG G G G P G+ G+PG G + + A G
Sbjct: 268 FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
Query: 84 AD 85
+D
Sbjct: 328 SD 329
>gi|341902084|gb|EGT58019.1| hypothetical protein CAEBREN_29944 [Caenorhabditis brenneri]
Length = 1110
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNGTKTD 78
+ G G GR G PG PG DG+PG GM G PG+DGLPG+DG+PG G K +
Sbjct: 433 LPGIPGKAGRQGAPGSPGQDGLPGFPGMKGEAGYPGQDGLPGRDGLPGVPGQKGE 487
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPG------EPGLDGIPGRNGMDGIPGK---DGLPG 65
+ ++G A + G GLDG+ G+PG + GL GIPG GMDG PG+ +G PG
Sbjct: 484 QKGELGTAGQPGLPGAPGLDGQPGVPGIRGDKGQAGLPGIPGDRGMDGFPGQKGENGYPG 543
Query: 66 KDGIPGTNGTK 76
+ G+PG G K
Sbjct: 544 QPGLPGLAGEK 554
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 30/48 (62%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G G G+DGLPG PG+ G G G DG+PG+DGLPG G G GT
Sbjct: 443 QGAPGSPGQDGLPGFPGMKGEAGYPGQDGLPGRDGLPGVPGQKGELGT 490
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Query: 16 RRDIGRAISTVISGRIGLDG------RDGLPGEPGLDGIPGRNGMDGIPGKDGL------ 63
R D G+A I G G+DG +G PG+PGL G+ G G G PG GL
Sbjct: 512 RGDKGQAGLPGIPGDRGMDGFPGQKGENGYPGQPGLPGLAGEKGFAGTPGFPGLKGAPGY 571
Query: 64 PGKDGIPGTNGTKTDH 79
PG+DG+PG G K +
Sbjct: 572 PGQDGLPGIPGLKGES 587
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTKTD 78
+ G GL G GLPG PG G PG NG+ G G+DGL PG+DG PG G K +
Sbjct: 654 LPGAPGLKGDSGLPGFPGAKGDPGANGIPGKRGEDGLPGVPGRDGQPGIPGLKGE 708
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+ GL GRDGLPG PG G G G G+PG GL G+ G+PG G K
Sbjct: 466 YPGQDGLPGRDGLPGVPGQKGELGTAGQPGLPGAPGLDGQPGVPGIRGDK 515
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 27 ISGRIGLDG--RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G GL G + G PGE GL GIPG+ G G PG PG+DG+PG G K + G
Sbjct: 413 FKGEAGLPGYGQPGAPGEKGLPGIPGKAGRQGAPGS---PGQDGLPGFPGMKGEAGYPGQ 469
Query: 85 DTKSFSDGVLPSV 97
D DG LP V
Sbjct: 470 DGLPGRDG-LPGV 481
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G A +G G G G PG PG DG+PG G+ G G G PG++G+PG +G K
Sbjct: 549 GLAGEKGFAGTPGFPGLKGAPGYPGQDGLPGIPGLKGESGYPGQPGQEGLPGLSGEK 605
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
L G+DG PG PG G G++G+PG GL G G+PG G K D A G K DG
Sbjct: 633 LQGKDGFPGLPGQKG---DAGLNGLPGAPGLKGDSGLPGFPGAKGDPGANGIPGKRGEDG 689
Query: 93 VLPSV 97
LP V
Sbjct: 690 -LPGV 693
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP------GKDGLPGKDGIPGTN 73
GR I G G G GLPG+PG G+PG G G+P G+ G PG G+PG
Sbjct: 695 GRDGQPGIPGLKGELGSAGLPGQPGFPGLPGIKGEGGLPGFPGAKGEPGFPGTPGVPGYA 754
Query: 74 GTKTDH 79
G K D
Sbjct: 755 GEKGDS 760
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 30/52 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G G G DGLPG PG DG PG G+ G G GLPG+ G PG G K +
Sbjct: 678 ANGIPGKRGEDGLPGVPGRDGQPGIPGLKGELGSAGLPGQPGFPGLPGIKGE 729
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK--DGIPGTNGTKTDHYAMGADTKSF 89
GL G+DG +PGLDG PGR G +G+PG G PG +G+PG G + G D +
Sbjct: 197 GLPGKDG---KPGLDGAPGRKGENGLPGVRGPPGDSLNGLPGAPGPRGAPGPKGYDGRDG 253
Query: 90 SDGV 93
+G+
Sbjct: 254 VNGL 257
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 28/50 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL G PG G DG+PG GL G+ G PG G +
Sbjct: 547 LPGLAGEKGFAGTPGFPGLKGAPGYPGQDGLPGIPGLKGESGYPGQPGQE 596
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
I G G G G+PG+ G+DG PG+ G +G PG+ GLPG G G GT GA
Sbjct: 511 IRGDKGQAGLPGIPGDRGMDGFPGQKGENGYPGQPGLPGLAGEKGFAGTPGFPGLKGAPG 570
Query: 87 KSFSDGV 93
DG+
Sbjct: 571 YPGQDGL 577
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 37/82 (45%), Gaps = 18/82 (21%)
Query: 20 GRAISTVISGRIGLDGRDGLP------GEPGLDGIPGRNGMDGIPGKD------------ 61
G+A G G DG G P G PG DG+PGR+G+ G+PG+
Sbjct: 438 GKAGRQGAPGSPGQDGLPGFPGMKGEAGYPGQDGLPGRDGLPGVPGQKGELGTAGQPGLP 497
Query: 62 GLPGKDGIPGTNGTKTDHYAMG 83
G PG DG PG G + D G
Sbjct: 498 GAPGLDGQPGVPGIRGDKGQAG 519
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 20/72 (27%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIP---GRNGMDGIPGKDGLP-----------------GK 66
+ G GL G G PG+PG +G+P G GM G+PG G P GK
Sbjct: 577 LPGIPGLKGESGYPGQPGQEGLPGLSGEKGMAGLPGLPGQPGQSIPGPVGPPGAPGLQGK 636
Query: 67 DGIPGTNGTKTD 78
DG PG G K D
Sbjct: 637 DGFPGLPGQKGD 648
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 6/54 (11%)
Query: 27 ISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGK---DGIPGTNG 74
+ G+ G G +GLPG PGL G+PG G G PG +G+PGK DG+PG G
Sbjct: 642 LPGQKGDAGLNGLPGAPGLKGDSGLPGFPGAKGDPGANGIPGKRGEDGLPGVPG 695
>gi|116003881|ref|NP_001070299.1| collagen alpha-1(III) chain precursor [Bos taurus]
gi|115305332|gb|AAI23470.1| Collagen, type III, alpha 1 [Bos taurus]
Length = 1466
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
R + G A S I+G G DG+DG PGEPG +G+PG G G+PG G G +G+PG
Sbjct: 446 RGERGEAGSPGIAGPKGEDGKDGSPGEPGANGLPGAAGERGVPGFRGPAGANGLPG 501
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE G G PG G G+PG G+ G G G NG K + A G
Sbjct: 227 AGKDGESGRPGRPGERGFPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPG 282
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR G G+ G G+PG PG+ G GRNG G G GL G++G+PG NG
Sbjct: 237 GRPGERGFPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGVPGENGA 295
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
GR G G G PG G +G+PG NG G G G P G+ G+PG G + + A G
Sbjct: 268 FDGRNGEKGETGAPGLKGENGVPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
Query: 84 AD 85
+D
Sbjct: 328 SD 329
>gi|301766572|ref|XP_002918708.1| PREDICTED: hypothetical protein LOC100472350 [Ailuropoda
melanoleuca]
Length = 1298
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 36/63 (57%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A S I G G DG+DG PGEPG +G+PG G G PG G G +G+PG
Sbjct: 358 EPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPG 417
Query: 72 TNG 74
G
Sbjct: 418 EKG 420
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 25/48 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G++G GEPG G G G GIPG G GKDG PG G
Sbjct: 345 GAAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGAN 392
>gi|83776772|gb|ABC46702.1| collagen-like protein [Streptococcus pyogenes]
Length = 334
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+G+ G +G+DGLPG+ G DG G++G+ G GKDG GKDG+PG +T DT
Sbjct: 189 AGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDGKDGLPGKPAPQTPEVPQKPDT 247
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 35/52 (67%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK 66
+R IG A +G+ GL G+DG G+ G DG+PG++G DG GKDGLPGK
Sbjct: 182 ERGPIGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDGKDGLPGK 233
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G IG G+DG + G DG+PG++G DG GKDGLPGKDG G +G
Sbjct: 184 GPIGPAGKDG---QNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDG 226
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG---LPGKDGIPGTNG 74
G G G+DG G G G G+NG DG+PGKDG GKDG+PG +G
Sbjct: 171 KGEQGPAGKDGERGPIGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDG 220
>gi|268532200|ref|XP_002631228.1| C. briggsae CBR-BLI-1 protein [Caenorhabditis briggsae]
Length = 962
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 32/60 (53%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G DG G PGE G+DG G NG DG PG G PG G+ G GT A G + +S
Sbjct: 453 GERGADGPPGAPGEDGIDGEQGTNGQDGQPGAPGAPGYHGMNGAPGTAGKPGAPGRNGQS 512
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG-----IPGTNG 74
I G G +G+DG PG PG G G NG G GK G PG++G +PG G
Sbjct: 469 IDGEQGTNGQDGQPGAPGAPGYHGMNGAPGTAGKPGAPGRNGQSCRAVPGPPG 521
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 26/47 (55%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G PGE G DG PG G DGI G+ G G+DG PG G H GA
Sbjct: 450 GPPGERGADGPPGAPGEDGIDGEQGTNGQDGQPGAPGAPGYHGMNGA 496
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 17/64 (26%)
Query: 28 SGRIGLDGRDG-----LPGEPGLDGI------------PGRNGMDGIPGKDGLPGKDGIP 70
+G+ G GR+G +PG PG G+ G +G DG PG G PGKDG P
Sbjct: 500 AGKPGAPGRNGQSCRAVPGPPGQPGVMGGPGRDGDPGTDGEHGQDGSPGIQGPPGKDGRP 559
Query: 71 GTNG 74
G +G
Sbjct: 560 GADG 563
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GE G DG PG + G PGKDG PG DG PG +
Sbjct: 539 GEHGQDGSPG---IQGPPGKDGRPGADGQPGVSA 569
>gi|94543910|gb|ABF33958.1| Collagen-like surface protein [Streptococcus pyogenes MGAS10270]
Length = 482
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DR + G A +G+ G DG+DGLPG+ G D G++G DG+PGKD GKDG PG
Sbjct: 330 DRGETGPAGPVGPAGKDGQDGKDGLPGKDGKD---GQDGKDGLPGKD---GKDGQPGKPA 383
Query: 75 TKTDHYAMGADTKSFS 90
KT DT +
Sbjct: 384 PKTPEVPQKPDTAPHT 399
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 31/59 (52%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
R D G G G DG+DG GE G G G G DG GKDGLPGKDG G +G
Sbjct: 307 RGDKGETGERGEQGPAGQDGKDGDRGETGPAGPVGPAGKDGQDGKDGLPGKDGKDGQDG 365
>gi|355558139|gb|EHH14919.1| hypothetical protein EGK_00927 [Macaca mulatta]
Length = 1661
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 36/61 (59%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
D+G I G G++G GL GEPG G PG G +G+ GKDGL G G+PG +G K
Sbjct: 974 DVGPPGEMGIEGPPGIEGESGLQGEPGAKGEPGAPGEEGLQGKDGLKGGRGLPGEDGEKG 1033
Query: 78 D 78
D
Sbjct: 1034 D 1034
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
SG+ G+ G GLPG G+ G G +G+ G PGK G PGK G+PG G+
Sbjct: 1226 SGKAGIPGLQGLPGPKGIQGYHGADGILGNPGKVGPPGKQGLPGIRGS 1273
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GR GL G G PG G G+PG G+ G G+ GLPG+ GI GT G +
Sbjct: 1275 GRTGLAGAPGPPGVKGSSGLPGSPGIQGPKGEQGLPGQPGIQGTRGHR 1322
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G++G G+ GL PG+ G PGR G+ G PG G+ G G+PG+ G +
Sbjct: 1257 GKVGPPGKQGL---PGIRGSPGRTGLAGAPGPPGVKGSSGLPGSPGIQ 1301
>gi|74004777|ref|XP_851009.1| PREDICTED: collagen alpha-1(III) chain isoform 2 [Canis lupus
familiaris]
Length = 1465
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 36/63 (57%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A S I G G DG+DG PGEPG +G+PG G G PG G G +G+PG
Sbjct: 442 EPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPG 501
Query: 72 TNG 74
G
Sbjct: 502 EKG 504
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G G+PG G+ G G G NG K D A G
Sbjct: 227 AGKDGESGRPGRPGERGLPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPG 282
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR + G G+ G G+PG PG+ G GRNG G G GL G++G+PG NG
Sbjct: 237 GRPGERGLPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGA 295
>gi|308482253|ref|XP_003103330.1| CRE-LET-2 protein [Caenorhabditis remanei]
gi|308260120|gb|EFP04073.1| CRE-LET-2 protein [Caenorhabditis remanei]
Length = 1293
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+RRD + G+ G G G PG+ GL G PG G G PG+DGLPG+DG+PG G
Sbjct: 637 ERRDFQES-----PGKSGRQGAPGSPGQDGLPGFPGLKGEAGYPGQDGLPGRDGLPGVPG 691
Query: 75 TKTD 78
K D
Sbjct: 692 MKGD 695
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 34/56 (60%), Gaps = 9/56 (16%)
Query: 28 SGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLP------GKDGIPGTNG 74
+G GL G+ G PGE GL G+PGR G G PG+DGLP G+DG+PG G
Sbjct: 423 NGLPGLSGQPGYPGEKGDAGLPGVPGREGSPGFPGQDGLPGVPGQKGEDGLPGLPG 478
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTKTD 78
+ G GL G GLPG PG G PG NG+ G G+DGL PG+DG PG G K +
Sbjct: 862 LPGAPGLKGDAGLPGFPGAKGDPGSNGIPGKRGEDGLPGVPGRDGQPGIPGLKGE 916
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G G G G PG PG DG+PG G+ G G G PG++G+PG +G K
Sbjct: 764 FAGTPGFPGLKGSPGYPGQDGLPGIPGLKGESGYPGQPGQEGLPGLSGEK 813
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 28 SGRIGLDGRDGLPGEPG------LDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G G G DGLPG PG G PG G G+PG G PG+DG+PG G K +
Sbjct: 183 NGYPGQPGNDGLPGAPGPVGPAGQPGYPGEKGDAGLPGLSGKPGQDGLPGLPGNKGE 239
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDG---LPGKDGIPGTNGTKTD 78
G GL G +GLPG +PG G G G+ G+PG++G PG+DG+PG G K +
Sbjct: 413 FPGAPGLKGENGLPGLSGQPGYPGEKGDAGLPGVPGREGSPGFPGQDGLPGVPGQKGE 470
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
L G+DG PG PG G +G++G+PG GL G G+PG G K D + G K DG
Sbjct: 841 LQGKDGFPGLPGQKG---DSGLNGLPGAPGLKGDAGLPGFPGAKGDPGSNGIPGKRGEDG 897
Query: 93 VLPSV 97
LP V
Sbjct: 898 -LPGV 901
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK--DGIPGTNGTKTDHYAMGADTKSF 89
GL G+DG +PGLDG PGR G +G+PG G PG +G+PG+ G + G D +
Sbjct: 19 GLPGKDG---KPGLDGAPGRKGENGLPGVRGPPGDSLNGLPGSPGPRGAPGPKGYDGRDG 75
Query: 90 SDGV 93
+G+
Sbjct: 76 INGL 79
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G G+DGLPG PGL G PG+ G +G+PG G G+ G+PG G
Sbjct: 773 LKGSPGYPGQDGLPGIPGLKGESGYPGQPGQEGLPGLSGEKGQSGLPGLPG 823
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 30/51 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G G G DGLPG PG DG PG G+ G G GLPG+ G PG G K +
Sbjct: 887 NGIPGKRGEDGLPGVPGRDGQPGIPGLKGELGGAGLPGQPGFPGLPGIKGE 937
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG------KDGLPGKDGIPGTN 73
GR I G G G GLPG+PG G+PG G G+PG + G PG G+PG
Sbjct: 903 GRDGQPGIPGLKGELGGAGLPGQPGFPGLPGIKGEGGLPGFPGAKGEPGFPGSPGVPGYA 962
Query: 74 GTK 76
G K
Sbjct: 963 GEK 965
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 11/57 (19%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKD-----GLPGKDGIPGTNG 74
G +G G+ G PGE PGL G PG++G+ G+PG G PG+ G+PGT G
Sbjct: 199 GPVGPAGQPGYPGEKGDAGLPGLSGKPGQDGLPGLPGNKGEAGYGQPGQPGLPGTKG 255
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 6/54 (11%)
Query: 27 ISGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGK---DGIPGTNG 74
+ G+ G G +GLPG PGL G +PG G G PG +G+PGK DG+PG G
Sbjct: 850 LPGQKGDSGLNGLPGAPGLKGDAGLPGFPGAKGDPGSNGIPGKRGEDGLPGVPG 903
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 36/74 (48%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G+ + G G G GLPG PGL+G G G G+ G++GLPG G PG G K D
Sbjct: 382 GQPGAPGFPGLKGDAGLPGLPGAPGLEGQRGFPGAPGLKGENGLPGLSGQPGYPGEKGDA 441
Query: 80 YAMGADTKSFSDGV 93
G + S G
Sbjct: 442 GLPGVPGREGSPGF 455
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 27 ISGRIGLDGRDGLPG--------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+SG+ G DG GLPG +PG G+PG G G+PG G PG G+PG
Sbjct: 221 LSGKPGQDGLPGLPGNKGEAGYGQPGQPGLPGTKGDSGLPGLPGTPGLQGMPG 273
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
PG+PGL G+PG G G PG+ G G+ G PG G K D
Sbjct: 286 PGQPGLPGLPGTKGESGYPGRPGEVGQPGFPGLPGMKGDS 325
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 20/73 (27%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIP------GRNGMDGIPGKDG--------------LPGK 66
+ G GL G G PG+PG +G+P G++G+ G+PG+ G L GK
Sbjct: 785 LPGIPGLKGESGYPGQPGQEGLPGLSGEKGQSGLPGLPGQPGQSIPGPVGPPGAPGLQGK 844
Query: 67 DGIPGTNGTKTDH 79
DG PG G K D
Sbjct: 845 DGFPGLPGQKGDS 857
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 16 RRDIGRAISTVISGRIGLDGR--DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
+ ++G A +SG+ G G G PG PG G+ G G+ G+PG GL G+ G PG
Sbjct: 358 KGEVGNAGLPGLSGQKGEPGVGVPGQPGAPGFPGLKGDAGLPGLPGAPGLEGQRGFPGAP 417
Query: 74 GTKTDH 79
G K ++
Sbjct: 418 GLKGEN 423
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 36 RDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
R G PG PGL +G PG+ G DG+PG G G G PG G K D G K DG
Sbjct: 170 RPGPPGYPGLKGENGYPGQPGNDGLPGAPGPVGPAGQPGYPGEKGDAGLPGLSGKPGQDG 229
Query: 93 V 93
+
Sbjct: 230 L 230
>gi|296490750|tpg|DAA32863.1| TPA: collagen alpha-1(III) chain [Bos taurus]
Length = 1454
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
R + G A S I+G G DG+DG PGEPG +G+PG G G+PG G G +G+PG
Sbjct: 446 RGERGEAGSPGIAGPKGEDGKDGSPGEPGANGLPGAAGERGVPGFRGPAGANGLPG 501
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR G G+ G G+PG PG+ G GRNG G G GL G++G+PG NG
Sbjct: 237 GRPGERGFPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGVPGENGA 295
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE G G PG G G+PG G+ G G G NG K + A G
Sbjct: 227 AGKDGESGRPGRPGERGFPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPG 282
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
GR G G G PG G +G+PG NG G G G P G+ G+PG G + + A G
Sbjct: 268 FDGRNGEKGETGAPGLKGENGVPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
Query: 84 AD 85
+D
Sbjct: 328 SD 329
>gi|426220723|ref|XP_004004563.1| PREDICTED: collagen alpha-1(III) chain [Ovis aries]
Length = 1467
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
R + G A S I+G G DG+DG PGEPG +G+PG G G+PG G G +G+PG
Sbjct: 447 RGERGEAGSPGIAGPKGEDGKDGSPGEPGANGLPGAAGERGVPGFRGPAGANGLPG 502
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G G+PG G+ G G G NG K + A G
Sbjct: 228 AGKDGESGRPGRPGERGLPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPG 283
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR + G G+ G G+PG PG+ G GRNG G G GL G++GIPG NG
Sbjct: 238 GRPGERGLPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGIPGENGA 296
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
GR G G G PG G +GIPG NG G G G P G+ G+PG G + + A G
Sbjct: 269 FDGRNGEKGETGAPGLKGENGIPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 328
Query: 84 AD 85
+D
Sbjct: 329 SD 330
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 47 GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G G G DG PG DGLPG+DG PGT G + ++
Sbjct: 1006 GAAGEPGRDGNPGSDGLPGRDGAPGTKGDRGEN 1038
>gi|410969050|ref|XP_003991010.1| PREDICTED: collagen alpha-1(III) chain [Felis catus]
Length = 1466
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 36/63 (57%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A S I G G DG+DG PGEPG +G+PG G G PG G G +G+PG
Sbjct: 442 EPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPG 501
Query: 72 TNG 74
G
Sbjct: 502 EKG 504
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
SG+ G G +G G PG G+PG G G PG+DG PG DG+PG +G
Sbjct: 980 SGKPGSPGHNGERGAPGPQGLPGLAGAAGEPGRDGNPGSDGLPGRDGA 1027
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G G+PG G+ G G G NG K + A G
Sbjct: 227 AGKDGESGRPGRPGERGLPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPG 282
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR + G G+ G G+PG PG+ G GRNG G G GL G++G+PG NG
Sbjct: 237 GRPGERGLPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGA 295
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
GR G G G PG G +G+PG NG G G G P G+ G+PG G + + A G
Sbjct: 268 FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
Query: 84 AD 85
+D
Sbjct: 328 SD 329
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G IG G GL G PG G PG NG G PG G+ G PGT G K D A G
Sbjct: 630 GDIGPPGPQGLQGLPGTSGPPGENGKPGEPGPK---GEAGSPGTPGGKGDSGAPG 681
>gi|449274207|gb|EMC83490.1| Collagen alpha-1(XX) chain [Columba livia]
Length = 1472
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG--KDGIPGTNG 74
G G +G+PG+PG DG PG G+ G G+ G+PG K+G PG G
Sbjct: 1371 GEKGENGVPGQPGKDGYPGERGVPGPKGEKGMPGDSKEGTPGPRG 1415
Score = 40.8 bits (94), Expect = 0.099, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 46 DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
+G G NG+ G PGKDG PG+ G+PG G K M D+K + G
Sbjct: 1370 NGEKGENGVPGQPGKDGYPGERGVPGPKGEK----GMPGDSKEGTPG 1412
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 29 GRIGLDGRDGLPGE-----PGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G G GR G PGE PG G PG G G PG G PG+ G PG
Sbjct: 1409 GTPGPRGRTGPPGEVVLGKPGPKGHPGNAGPQGFPGLRGQPGQPGYPG 1456
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG--KDGLPGKDGIPGTNG 74
+G G G+DG PGE G+PG G G+PG K+G PG G G G
Sbjct: 1376 NGVPGQPGKDGYPGE---RGVPGPKGEKGMPGDSKEGTPGPRGRTGPPG 1421
>gi|344245780|gb|EGW01884.1| Collagen alpha-5(IV) chain [Cricetulus griseus]
Length = 522
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 15 DRRDIGRAISTV-ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
+R+ G ++ + + G G+ G G PG PGL G PG++G+ G+PG G PG G PG N
Sbjct: 192 SKRNPGDVLTLLGMKGDKGVLGSPGAPGLPGLPGTPGKDGLPGLPGPKGEPGNPGRPGLN 251
Query: 74 GTKTD 78
G K D
Sbjct: 252 GMKGD 256
>gi|410966498|ref|XP_004001603.1| PREDICTED: LOW QUALITY PROTEIN: complement C1q subcomponent subunit
C [Felis catus]
Length = 275
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 28/42 (66%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G+PG PGL G PG++G DG+PG G PG IPGT G K
Sbjct: 61 GCYGIPGMPGLPGAPGKDGYDGLPGPKGEPGIPAIPGTQGPK 102
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G G DG DGLPG EPG+ IPG G G G+ G PG G G GT
Sbjct: 71 LPGAPGKDGYDGLPGPKGEPGIPAIPGTQGPKGQKGERGTPGHPGKNGPTGT 122
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 28 SGRIGLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+G G+ G GLPG PG DG+PG G GIP G G G G GT
Sbjct: 60 TGCYGIPGMPGLPGAPGKDGYDGLPGPKGEPGIPAIPGTQGPKGQKGERGT 110
>gi|281351911|gb|EFB27495.1| hypothetical protein PANDA_007210 [Ailuropoda melanoleuca]
Length = 1440
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 36/63 (57%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A S I G G DG+DG PGEPG +G+PG G G PG G G +G+PG
Sbjct: 416 EPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPG 475
Query: 72 TNG 74
G
Sbjct: 476 EKG 478
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G G+PG G+ G G G NG K D A G
Sbjct: 201 AGKDGESGRPGRPGERGLPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPG 256
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR + G G+ G G+PG PG+ G GRNG G G GL G++G+PG NG
Sbjct: 211 GRPGERGLPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGA 269
>gi|405978682|gb|EKC43052.1| Collagen alpha-1(IV) chain [Crassostrea gigas]
Length = 1598
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 32/49 (65%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G+ GL G+ GL G PGLDG PGR G G PG GLPG DG+PG G
Sbjct: 766 LPGQDGLKGQRGLDGAPGLDGTPGREGPAGEPGLSGLPGYDGLPGMKGA 814
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGM---DGIPGKDGLPGKDGIPGTNG 74
GR G DG G PG+PG DG+PG GM DG+PG +GL G DGIPG G
Sbjct: 1033 TPGRSGPDGLKGFPGDPGQDGLPGFPGMLGEDGLPGFEGLKGDDGIPGEEG 1083
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPGTNGT 75
G G GRDG+PGE GL G PG G+ G+PG+DGL G+ DG PG +GT
Sbjct: 736 FPGLKGFRGRDGIPGEVGLTGAPGDPGLPGLPGQDGLKGQRGLDGAPGLDGT 787
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 35/64 (54%), Gaps = 14/64 (21%)
Query: 27 ISGRIGLDGRDGLPGE------PGLDGIPGR--------NGMDGIPGKDGLPGKDGIPGT 72
+ G GL G +G+PGE PG DG PGR N + G PG++G PG DG PG
Sbjct: 877 LPGLQGLPGDNGIPGEVGVVGRPGQDGFPGRKGERGEVGNSIPGEPGRNGRPGGDGFPGL 936
Query: 73 NGTK 76
NG K
Sbjct: 937 NGLK 940
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G DG G G GL G PG G DG+PG G+ G+DG+PG G K D G + ++
Sbjct: 1026 GEQGFDGTPGRSGPDGLKGFPGDPGQDGLPGFPGMLGEDGLPGFEGLKGDDGIPGEEGRA 1085
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDG---LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G +GL G G LPG PG DG+ G+ G+DG PG DG PG++G G G
Sbjct: 748 IPGEVGLTGAPGDPGLPGLPGQDGLKGQRGLDGAPGLDGTPGREGPAGEPG 798
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKD---GIPGTNGTKTDHY 80
I G G GR+G GEPG+ G PG NG+ GIP G+ GLPG G+PG +G + Y
Sbjct: 1315 IRGFTGDPGRNGDIGEPGVKGPPGNNGLSGIPGERGRQGLPGAKGFAGLPGLSGAVGEGY 1374
Query: 81 AM 82
+
Sbjct: 1375 GI 1376
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 12/65 (18%)
Query: 27 ISGRIGLDG---RDGLPGEPGLDGIPGRNGMDGI---------PGKDGLPGKDGIPGTNG 74
+ G GLDG R+G GEPGL G+PG +G+ G+ G+ GLPG+ G+PG G
Sbjct: 778 LDGAPGLDGTPGREGPAGEPGLSGLPGYDGLPGMKGATGFQGRSGEPGLPGQSGVPGVKG 837
Query: 75 TKTDH 79
++ +
Sbjct: 838 SRGES 842
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 29 GRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G G GR+GL GE G DGI PGRNG G PG G PG +G+ G G +
Sbjct: 1296 GPEGEPGRNGLAGERGDDGIRGFTGDPGRNGDIGEPGVKGPPGNNGLSGIPGERGRQGLP 1355
Query: 83 GADTKSFSDGVLPSVQRAIAAGLVIY 108
GA K F+ LP + A+ G IY
Sbjct: 1356 GA--KGFAG--LPGLSGAVGEGYGIY 1377
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GR+ + G G G+DGLPG PG+ G G G +G+ G DG+PG++G G G K +
Sbjct: 1035 GRSGPDGLKGFPGDPGQDGLPGFPGMLGEDGLPGFEGLKGDDGIPGEEGRAGRPGRKGEQ 1094
Query: 80 YAMG 83
G
Sbjct: 1095 GDFG 1098
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G +G G PG PGL G+PG NG+ G G G PG+DG PG G + +
Sbjct: 864 GFPGPEGDIGQPGLPGLQGLPGDNGIPGEVGVVGRPGQDGFPGRKGERGE 913
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 26/49 (53%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G GL G G PGE G G G G G+PG GLPG +GIPG G
Sbjct: 847 FPGSFGLPGLKGEPGEVGFPGPEGDIGQPGLPGLQGLPGDNGIPGEVGV 895
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 26/45 (57%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G PGEPGL G+PG+ G G G+ G PG G PG G K
Sbjct: 573 GEPGFRGDPGEPGLFGLPGQPGQSGFQGQPGDPGVPGFPGIPGAK 617
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G GR G PG PG G+PG G G G G PG G+PG G +
Sbjct: 811 MKGATGFQGRSGEPGLPGQSGVPGVKGSRGESGLPGFPGSFGLPGLKGEPGE 862
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 34/73 (46%), Gaps = 30/73 (41%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNG---------------------------MDGIPGKD 61
GR+GL G PGEPGL+GIPG+ G +DGIPG+
Sbjct: 1174 GRVGLKG---FPGEPGLNGIPGQKGERGFSGFPGEEGPVGNQGFRGRKGERGLDGIPGEQ 1230
Query: 62 GLPGKDGIPGTNG 74
G G+ G PG NG
Sbjct: 1231 GRTGEMGFPGENG 1243
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP------GKDGIPGTN 73
GR G GL G DGLPG G G GR+G G+PG+ G+P G+ G+PG
Sbjct: 789 GREGPAGEPGLSGLPGYDGLPGMKGATGFQGRSGEPGLPGQSGVPGVKGSRGESGLPGFP 848
Query: 74 GT 75
G+
Sbjct: 849 GS 850
>gi|313149001|ref|ZP_07811194.1| lipoprotein [Bacteroides fragilis 3_1_12]
gi|313137768|gb|EFR55128.1| lipoprotein [Bacteroides fragilis 3_1_12]
Length = 718
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 32/50 (64%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G DG+DG G G DG+ G NG DG G DG GKDG+ GT+G+K
Sbjct: 129 VDGADGTDGKDGENGTDGKDGVDGTNGSDGKDGVDGTDGKDGVNGTDGSK 178
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G DG+DG+ G G DG+ G +G DG G++G GKDG+ GTNG+
Sbjct: 113 GTDGKDGVDGTDGKDGVDGADGTDGKDGENGTDGKDGVDGTNGS 156
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
T+ +G+ G G DG G+ G+DG G++G+DG GKDG+ G DG G +G G
Sbjct: 91 TIRNGKKGNTGPDGDAGKDGIDGTDGKDGVDGTDGKDGVDGADGTDGKDGENGTDGKDGV 150
Query: 85 DTKSFSDG 92
D + SDG
Sbjct: 151 DGTNGSDG 158
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 26/44 (59%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G DG+DG+ G G DG G NG DG G DG G DG G +GT
Sbjct: 122 GTDGKDGVDGADGTDGKDGENGTDGKDGVDGTNGSDGKDGVDGT 165
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
+G G DG DG G G DG+ G +G DG+ G DG G+ G PG N
Sbjct: 142 NGTDGKDGVDGTNGSDGKDGVDGTDGKDGVNGTDGSKGEQGDPGQN 187
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 31/56 (55%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I + S I+ R G G G G+ G DGI G +G DG+ G DG G DG GT+G
Sbjct: 82 ISFSRSVPITIRNGKKGNTGPDGDAGKDGIDGTDGKDGVDGTDGKDGVDGADGTDG 137
>gi|341890581|gb|EGT46516.1| hypothetical protein CAEBREN_15368 [Caenorhabditis brenneri]
Length = 294
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 30/48 (62%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G+DG PG+PG G PG G G PG +G PG+DG PG NG +
Sbjct: 153 GPNGQPGQDGFPGQPGAPGAPGPQGDAGTPGNNGQPGQDGRPGQNGRR 200
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
G PG G DG PG G +G PG+DG PG+ G PG G + D G + + DG
Sbjct: 138 GAPGPQGPDGAPGAPGPNGQPGQDGFPGQPGAPGAPGPQGDAGTPGNNGQPGQDG 192
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G G+ G PG G DG PG+ G DG PG++GL DG+PGT+G
Sbjct: 224 GQDGAPGQAGAPGASGPDGQPGQKGGDGQPGENGL---DGVPGTDGA 267
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG 62
+G G G DG PG+ G DG PG NG+DG+PG DG
Sbjct: 232 AGAPGASGPDGQPGQKGGDGQPGENGLDGVPGTDG 266
>gi|424664813|ref|ZP_18101849.1| hypothetical protein HMPREF1205_00688 [Bacteroides fragilis HMW
616]
gi|404575346|gb|EKA80089.1| hypothetical protein HMPREF1205_00688 [Bacteroides fragilis HMW
616]
Length = 718
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 32/50 (64%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G DG+DG G G DG+ G NG DG G DG GKDG+ GT+G+K
Sbjct: 129 VDGTDGTDGKDGENGTDGKDGVDGTNGSDGKDGVDGTDGKDGVNGTDGSK 178
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G DG+DG+ G G DG+ G +G DG G++G GKDG+ GTNG+
Sbjct: 113 GTDGKDGVDGADGKDGVDGTDGTDGKDGENGTDGKDGVDGTNGS 156
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
T+ +G+ G G DG G+ G+DG G++G+DG GKDG+ G DG G +G G
Sbjct: 91 TIRNGKKGNTGPDGDAGKDGIDGTDGKDGVDGADGKDGVDGTDGTDGKDGENGTDGKDGV 150
Query: 85 DTKSFSDG 92
D + SDG
Sbjct: 151 DGTNGSDG 158
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 26/44 (59%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G DG+DG+ G G DG G NG DG G DG G DG G +GT
Sbjct: 122 GADGKDGVDGTDGTDGKDGENGTDGKDGVDGTNGSDGKDGVDGT 165
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
+G G DG DG G G DG+ G +G DG+ G DG G+ G PG N
Sbjct: 142 NGTDGKDGVDGTNGSDGKDGVDGTDGKDGVNGTDGSKGEQGDPGQN 187
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I + S I+ R G G G G+ G DGI G +G DG+ G D GKDG+ GT+GT
Sbjct: 82 ISFSRSAPITIRNGKKGNTGPDGDAGKDGIDGTDGKDGVDGAD---GKDGVDGTDGTDGK 138
Query: 79 HYAMGADTKSFSDGV 93
G D K DG
Sbjct: 139 DGENGTDGKDGVDGT 153
>gi|308454750|ref|XP_003089972.1| hypothetical protein CRE_22206 [Caenorhabditis remanei]
gi|308468054|ref|XP_003096271.1| hypothetical protein CRE_25751 [Caenorhabditis remanei]
gi|308243314|gb|EFO87266.1| hypothetical protein CRE_25751 [Caenorhabditis remanei]
gi|308267521|gb|EFP11474.1| hypothetical protein CRE_22206 [Caenorhabditis remanei]
Length = 289
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 34/55 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
+G+ G DG G PGE G +G PG+ G DG PG+ G PG+DG PG G + A+
Sbjct: 223 AGQPGKDGAQGGPGEKGANGEPGQPGRDGQPGRPGQPGRDGHPGEKGVCPKYCAL 277
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 31/68 (45%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G GR G PG G G PG++G G PG+ G G+ G PG +G G D
Sbjct: 206 GAPGEPGRPGQPGPRGAAGQPGKDGAQGGPGEKGANGEPGQPGRDGQPGRPGQPGRDGHP 265
Query: 89 FSDGVLPS 96
GV P
Sbjct: 266 GEKGVCPK 273
>gi|56711254|ref|NP_114474.1| collagen alpha-1(III) chain precursor [Rattus norvegicus]
gi|83301602|sp|P13941.3|CO3A1_RAT RecName: Full=Collagen alpha-1(III) chain; Flags: Precursor
gi|56268836|gb|AAH87039.1| Collagen, type III, alpha 1 [Rattus norvegicus]
gi|149046235|gb|EDL99128.1| procollagen, type III, alpha 1 [Rattus norvegicus]
Length = 1463
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 35/63 (55%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A S I G G DG+DG PGEPG +G+PG G G PG G G +G PG
Sbjct: 441 EPGARGERGEAGSPGIPGPKGEDGKDGSPGEPGANGVPGNPGERGAPGFRGPAGPNGAPG 500
Query: 72 TNG 74
G
Sbjct: 501 EKG 503
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G GIPG G+ G G G NG K + A G
Sbjct: 226 AGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPG 281
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 27/49 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
I G G G +G PGEPG G G G+ G G G PG+ G PGT GT
Sbjct: 642 IPGTSGPPGENGKPGEPGPKGEAGAPGVPGGKGDSGAPGERGPPGTAGT 690
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 28 SGRIGLDGRDGLPGEPGLDG---IPG------------RNGMDGIPGKDGLPGKDGIPGT 72
SGR G G GLPG PG+ G IPG RNG G G GL G++G+PG
Sbjct: 232 SGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGD 291
Query: 73 NGT 75
NG
Sbjct: 292 NGA 294
>gi|326668597|ref|XP_002662448.2| PREDICTED: collagen alpha-1(XVIII) chain-like [Danio rerio]
Length = 1044
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 33/50 (66%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G GLPG+PGL GIPG+ G +G G++G+PG DG PG G K
Sbjct: 501 LPGPQGPQGIPGLPGKPGLPGIPGQKGDEGQRGREGMPGLDGFPGQIGLK 550
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GL G+ GLPG PG G G+ G +G+PG DG PG+ G+ G G K D
Sbjct: 512 GLPGKPGLPGIPGQKGDEGQRGREGMPGLDGFPGQIGLKGERGWKGD 558
>gi|17539418|ref|NP_501561.1| Protein COL-119 [Caenorhabditis elegans]
gi|3875169|emb|CAA92453.1| Protein COL-119 [Caenorhabditis elegans]
Length = 289
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G+ S +G+ G DG G PGE G +G PG+ G DG PG+ G PG+DG PG G +
Sbjct: 215 GQPGSRGPAGQPGKDGAQGGPGEKGANGEPGQPGRDGQPGRPGQPGRDGHPGEKGVCPKY 274
Query: 80 YAM 82
A+
Sbjct: 275 CAL 277
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 31/68 (45%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G GR G PG G G PG++G G PG+ G G+ G PG +G G D
Sbjct: 206 GSPGEPGRPGQPGSRGPAGQPGKDGAQGGPGEKGANGEPGQPGRDGQPGRPGQPGRDGHP 265
Query: 89 FSDGVLPS 96
GV P
Sbjct: 266 GEKGVCPK 273
>gi|268535680|ref|XP_002632975.1| C. briggsae CBR-COL-119 protein [Caenorhabditis briggsae]
Length = 289
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 34/55 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
+G+ G DG G PGE G +G PG+ G DG PG+ G PG+DG PG G + A+
Sbjct: 223 AGQPGKDGAQGGPGEKGANGEPGQPGRDGQPGRPGQPGRDGHPGEKGVCPKYCAL 277
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 31/68 (45%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G GR G PG G G PG++G G PG+ G G+ G PG +G G D
Sbjct: 206 GAPGEPGRPGQPGPRGPAGQPGKDGAQGGPGEKGANGEPGQPGRDGQPGRPGQPGRDGHP 265
Query: 89 FSDGVLPS 96
GV P
Sbjct: 266 GEKGVCPK 273
>gi|431891153|gb|ELK02030.1| Brain-specific angiogenesis inhibitor 2 [Pteropus alecto]
Length = 2748
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 30/50 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 2649 GRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGD 2698
>gi|268534798|ref|XP_002632532.1| C. briggsae CBR-DPY-4 protein [Caenorhabditis briggsae]
Length = 289
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 29/51 (56%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G+DG G PG G G PG G DG PGK G PG+DG PG G + A+
Sbjct: 227 GIDGAPGAPGAKGEPGTPGEPGKDGEPGKPGTPGQDGTPGEKGICPKYCAL 277
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+G DG PG PG G PG G PGKDG PGK G PG +GT
Sbjct: 226 NGIDGAPGAPGAKGEPG---TPGEPGKDGEPGKPGTPGQDGT 264
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
G G G G PGEPG DG PG+ G PG+DG PG+ GI
Sbjct: 233 GAPGAKGEPGTPGEPGKDGEPGK---PGTPGQDGTPGEKGI 270
>gi|268533176|ref|XP_002631716.1| C. briggsae CBR-ROL-1 protein [Caenorhabditis briggsae]
Length = 448
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
I G+ GL G G PGEPG+DG PG +G+ G PG+DG+ G G G
Sbjct: 384 IPGKDGLGGDQGAPGEPGVDGEPGLDGVPGNPGRDGVNGHGGEKG 428
Score = 40.8 bits (94), Expect = 0.099, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 22/35 (62%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
PG PG DG+ G G G PG DG PG DG+PG G
Sbjct: 382 PGIPGKDGLGGDQGAPGEPGVDGEPGLDGVPGNPG 416
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 35/93 (37%), Gaps = 26/93 (27%)
Query: 29 GRIGLDGRDGLPGEPGLD--------------------------GIPGRNGMDGIPGKDG 62
G G DG G PG PG D GIPG++G+ G G G
Sbjct: 339 GEKGKDGEPGAPGAPGEDVKEVPAIPGPQGPPGPRGRQGPRGAPGIPGKDGLGGDQGAPG 398
Query: 63 LPGKDGIPGTNGTKTDHYAMGADTKSFSDGVLP 95
PG DG PG +G + G + GV P
Sbjct: 399 EPGVDGEPGLDGVPGNPGRDGVNGHGGEKGVCP 431
>gi|294489336|ref|NP_001170943.1| collagen type IV alpha1 precursor [Oryzias latipes]
gi|283549302|dbj|BAI66290.1| collagen type IV alpha1 [Oryzias latipes]
Length = 1639
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 34/52 (65%)
Query: 23 ISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I+ + G G GR GL G+PGLDG+PGR+G+ G PG G P K+GI G G
Sbjct: 505 IAPGLKGEKGFPGRPGLQGQPGLDGLPGRDGLPGQPGLKGEPAKEGIKGERG 556
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGE----PGLDG---IPGRNGMDGIPGKDGLPGKDGIP 70
+ GR S G +G G G PG+ PGL G PGR G+ G PG DGLPG+DG+P
Sbjct: 478 ENGRPGSQGNPGLMGAPGAVGAPGDVVIAPGLKGEKGFPGRPGLQGQPGLDGLPGRDGLP 537
Query: 71 GTNGTKTDHYAMGADTKSFSDG 92
G G K + G + DG
Sbjct: 538 GQPGLKGEPAKEGIKGERGRDG 559
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 26/35 (74%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK 66
GL GRDGLPG+PGL G P + G+ G G+DG PG+
Sbjct: 529 GLPGRDGLPGQPGLKGEPAKEGIKGERGRDGEPGQ 563
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 28 SGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNGTKTD 78
+GR G G GLPG EPG DG PG G+ G G G PG+DGIPG+ G + D
Sbjct: 1081 AGRPGDKGDPGLPGSVGEPGRDGRPGEGGLQGPSGPRGDKGEPGEDGIPGSTGERGD 1137
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPG 71
GR GL G+ GL G PG DG+PG+ G+ G P K+G+ G+DG PG
Sbjct: 515 FPGRPGLQGQPGLDGLPGRDGLPGQPGLKGEPAKEGIKGERGRDGEPG 562
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPG---RNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G G GRDG GE G G+PG G G PG GLPG+ G+PG +G K +
Sbjct: 1222 VIGEAGFPGRDGEKGEKGSQGLPGFQGETGHKGDPGVPGLPGQTGLPGIDGQKGER 1277
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+ D+G + G G G GL G+ G+ G PG G +G+PG DGLPG G PG
Sbjct: 1326 KGDVGAPGIQGLPGPQGPAGFPGLKGQQGITGFPGPKGDNGVPGYDGLPGAKGEPG 1381
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 26/42 (61%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
+ G +G GRDG PGE GL G G G G PG+DG+PG G
Sbjct: 1092 LPGSVGEPGRDGRPGEGGLQGPSGPRGDKGEPGEDGIPGSTG 1133
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 24/37 (64%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G G PG PGL G PGR G DG+ G+ G PG+ G PG
Sbjct: 669 GYSGAPGAPGLPGEPGRPGKDGLTGQAGSPGQKGEPG 705
>gi|374110561|sp|D8VNS8.1|FCNV2_CERRY RecName: Full=Ryncolin-2; Flags: Precursor
gi|299791446|gb|ADJ51063.1| ryncolin-2 [Cerberus rynchops]
Length = 347
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 30 RIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPGTNG 74
+I L + G+PG PG+ GI G G+ G PG GLPG+ DGIPG G
Sbjct: 46 KIILQSQPGIPGIPGVPGINGSEGLKGDPGPQGLPGETGFDGIPGVAG 93
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG 62
I G G++G +GL G+PG G+PG G DGIPG G
Sbjct: 58 IPGVPGINGSEGLKGDPGPQGLPGETGFDGIPGVAG 93
>gi|324500440|gb|ADY40208.1| Collagen alpha-1(IV) chain, partial [Ascaris suum]
Length = 1759
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 35/55 (63%), Gaps = 6/55 (10%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGI---PGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I G+ G DG GLPG PGLDG PG GMDG+P G PGKDGIPG G + +
Sbjct: 1329 IDGKRGPDGARGLPGPPGLDGYPGAPGERGMDGLP---GFPGKDGIPGYPGERGE 1380
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G DG DGLPG PGLDG PG + G+PG DGLPG DG+ G G
Sbjct: 759 IPGQKGEDGSDGLPGAPGLDGAPG---LPGMPGDDGLPGADGLRGQPG 803
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 34/59 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
+ G G DG GLPG PG++GIPG+ G DG G G PG DG PG G D GAD
Sbjct: 738 LPGLRGDDGLPGLPGAPGIEGIPGQKGEDGSDGLPGAPGLDGAPGLPGMPGDDGLPGAD 796
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G++G G GE G DG+PG G+DG PG G+PG DG+PG +G +
Sbjct: 750 LPGAPGIEGIPGQKGEDGSDGLPGAPGLDGAPGLPGMPGDDGLPGADGLR 799
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G DGLPGEPG G +PG+ G+ G+PG G+PG G PG+ G + +
Sbjct: 976 GSRGEPGLDGLPGEPGRQGEPGLPGKMGLAGLPGLPGMPGDSGAPGSKGLRGE 1028
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 27/43 (62%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G DGR G GEPG G+PG+ G G+PG DGLPG G G G
Sbjct: 889 GKDGRVGKKGEPGYAGLPGQKGEAGVPGPDGLPGPKGETGKQG 931
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTKTDHYAMGA 84
+G G G DGLPG G +G PGR G G PG G PG+ G+PG G K + +G
Sbjct: 828 AGFPGPQGEDGLPGLAGAEGFPGRQGPRGAPGVKGQPGESGYPGLPGLPGLKGEKGLLGI 887
Query: 85 DTK 87
D K
Sbjct: 888 DGK 890
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G GL GR GLPG+PG G PG G++GIPG G G DG+PG G
Sbjct: 1216 LQGEPGLPGRMGLPGQPGELGAPGFPGAPGLEGIPGIRGERGDDGLPGLPG 1266
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 32 GLDGRDGLPGEPGLDGI---PGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+DG G GEPGLDG+ PGR G G+PGK GL G G+PG G
Sbjct: 970 GIDGYPGSRGEPGLDGLPGEPGRQGEPGLPGKMGLAGLPGLPGMPG 1015
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 20 GRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GR I G G DG GLPG PG DG+ G+ G GIPG G G+ G+PG G K
Sbjct: 1125 GRPGIPGIKGERGADGLPGLPGLQGPPGFDGLQGQKGHRGIPGDAGFNGRAGLPGLPGIK 1184
Query: 77 TDH 79
+
Sbjct: 1185 GER 1187
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G GL G GL GEPGL G +PG+ G G PG G PG +GIPG G + D
Sbjct: 1206 GESGLTGAPGLQGEPGLPGRMGLPGQPGELGAPGFPGAPGLEGIPGIRGERGD 1258
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKDGIPGTNGT 75
I G G DG+ G PGEPG G G +G+ G P G+ GLPG+ G+PG G
Sbjct: 1183 IKGERGQDGQHGYPGEPGPVGAHGESGLTGAPGLQGEPGLPGRMGLPGQPGE 1234
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIP 70
+ GR+GL G+ G PG PGL+GIPG G G G GLPG DGIP
Sbjct: 1222 LPGRMGLPGQPGELGAPGFPGAPGLEGIPGIRGERGDDGLPGLPGIDGIP 1271
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G GLPG + GL G+PG G++GIPG+ G G DG+PG G
Sbjct: 726 IPGPDGFPGAPGLPGLRGDDGLPGLPGAPGIEGIPGQKGEDGSDGLPGAPG 776
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 17/69 (24%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD-----------------GLPGK 66
S + G GLDG GLPG PG DG+PG +G+ G PG G+PG+
Sbjct: 768 SDGLPGAPGLDGAPGLPGMPGDDGLPGADGLRGQPGDAGLPGLPGLPGLPGEPGIGMPGQ 827
Query: 67 DGIPGTNGT 75
G PG G
Sbjct: 828 AGFPGPQGE 836
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G DG PG PGL PG G DG+PG G PG +GIPG G
Sbjct: 726 IPGPDGFPGAPGL---PGLRGDDGLPGLPGAPGIEGIPGQKGE 765
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G GL G +G G+PG+ G+ G G G PG GLPG DG+PG G
Sbjct: 71 GAPGLRGSEGDFGDPGVKGVRGERGFPGAPGNVGLPGLDGLPGMKGE 117
>gi|13560506|gb|AAK30079.1|AF336819_1 collagen-like protein B [Streptococcus pyogenes]
Length = 465
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 18/78 (23%)
Query: 27 ISGRIGLDGRDGLPGEPGLDG---------------IPGRNGMDG---IPGKDGLPGKDG 68
+ G+ G DG+DGLPG+ G DG +PG++G DG +PGKDG GKDG
Sbjct: 339 LPGKDGQDGKDGLPGKDGQDGKDGLPGKDGKDGKDGLPGKDGQDGKDGLPGKDGQDGKDG 398
Query: 69 IPGTNGTKTDHYAMGADT 86
+PG KT DT
Sbjct: 399 LPGKTAPKTPEVPQKPDT 416
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGIPG 71
+R +G A +G+ GL G+DG G+ G DG+PG++G DG +PGKDG GKDG+PG
Sbjct: 306 ERGPVGPAGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGQDGKDGLPGKDGQDGKDGLPG 365
Query: 72 TNGTKTDHYAMGADTKSFSDGV 93
+G G D + DG+
Sbjct: 366 KDGKDGKDGLPGKDGQDGKDGL 387
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG---LPGKDGIPGTNGTKTDHYAMGA 84
G G G+DG G G G G+NG DG+PGKDG GKDG+PG +G G
Sbjct: 295 KGEQGPAGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGQDGKDGLPGK 354
Query: 85 DTKSFSDGV 93
D + DG+
Sbjct: 355 DGQDGKDGL 363
>gi|395821044|ref|XP_003783859.1| PREDICTED: complement C1q subcomponent subunit C [Otolemur
garnettii]
Length = 243
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 28/42 (66%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G+PG PGL G PG++G DG+PG G PG IPGT G K
Sbjct: 29 GCYGIPGMPGLPGAPGKDGHDGLPGPKGEPGMPAIPGTRGPK 70
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 27 ISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
+ G G DG DGLP GEPG+ IPG G G G+ G+PG G
Sbjct: 39 LPGAPGKDGHDGLPGPKGEPGMPAIPGTRGPKGHKGEPGIPGHPG 83
>gi|17543328|ref|NP_502808.1| Protein DPY-4 [Caenorhabditis elegans]
gi|3880883|emb|CAB08999.1| Protein DPY-4 [Caenorhabditis elegans]
Length = 289
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 29/51 (56%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G+DG G PG G G PG G DG PGK G PG+DG PG G + A+
Sbjct: 227 GIDGAPGAPGAKGEPGTPGEPGKDGEPGKPGTPGQDGTPGEKGICPKYCAL 277
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+G DG PG PG G PG G PGKDG PGK G PG +GT
Sbjct: 226 NGIDGAPGAPGAKGEPG---TPGEPGKDGEPGKPGTPGQDGT 264
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
G G G G PGEPG DG PG+ G PG+DG PG+ GI
Sbjct: 233 GAPGAKGEPGTPGEPGKDGEPGK---PGTPGQDGTPGEKGI 270
>gi|311260227|ref|XP_003128387.1| PREDICTED: collagen alpha-1(XXI) chain [Sus scrofa]
Length = 957
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + I G+ GL GR G PG+PG G PG+ G DG PG G+ G G+PG+ G
Sbjct: 436 DVGSTEAPCICPPGKPGLQGRKGDPGQPGNPGYPGQPGQDGKPGYQGVAGSPGVPGSPGI 495
Query: 76 K 76
+
Sbjct: 496 Q 496
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 28/51 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G G G+DG PG G+ G PG G GI G GLPG G PG +G K D
Sbjct: 467 GYPGQPGQDGKPGYQGVAGSPGVPGSPGIQGARGLPGYRGEPGRDGEKGDR 517
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G G PG G+ G+PG++G G G+
Sbjct: 846 GLPGRDGVPGLMGAPGRPGAKGLKGLPGRNGAKGSQGL 883
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G A S + G G+ G GLPG EPG DG G G+ G PG G+PG G G G K
Sbjct: 482 GVAGSPGVPGSPGIQGARGLPGYRGEPGRDGEKGDRGLPGFPGLHGMPGSKGEMGPKGDK 541
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNG 74
+G G G+DGL GEPG+ G PG G+ G G+ G P GK G PG G
Sbjct: 589 AGPPGAPGQDGLRGEPGIPGFPGNQGLMGQKGEIGPPGPLGKKGAPGIPG 638
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GRA G+ GL G G GE G G PG++G+ G PG G PG G+ G G
Sbjct: 566 GRAGEPGRHGKDGLMGSPGYKGEAGPPGAPGQDGLRGEPGIPGFPGNQGLMGQKG 620
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G G G+DGL G PG G G G PG+DGL G+ GIPG G +
Sbjct: 568 AGEPGRHGKDGLMGSPGYKG---EAGPPGAPGQDGLRGEPGIPGFPGNQ 613
>gi|460246|gb|AAC46611.1| a2 (IV) basement membrane collagen [Brugia malayi]
Length = 1802
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 35/61 (57%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
R G A + G++GL G+ G PG GL GIPG G G PG G PGKDG+PG G
Sbjct: 656 RGQKGEAGFPGLPGQVGLPGKSGPPGLTGLPGIPGPKGEPGFPGLTGKPGKDGLPGFPGF 715
Query: 76 K 76
K
Sbjct: 716 K 716
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG---KDGLPGKDGIPGTNGTKTDHYAMGAD 85
G +GL G G PG PGL G+ G G+ G PG + G+PGK G PG+ G K D GA
Sbjct: 1393 GDVGLSGAPGAPGLPGLPGLKGEPGLPGFPGPKGEPGIPGKPGFPGSQGVKGDCGTPGAP 1452
Query: 86 TKSFSDGVL 94
+ + G +
Sbjct: 1453 GRDGAPGKI 1461
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 29/46 (63%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G GL G+DGLPG PG+ G PG G GIPG G PG GIPG G
Sbjct: 1315 GAPGLPGKDGLPGLPGMKGEPGIPGYPGIPGAKGEPGLPGIPGAKG 1360
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G GL G G+ GE G+ G+PG G++G+PG G PGKDGIPG G K +
Sbjct: 1001 AGLPGLPGAPGVKGERGIAGLPGLPGVEGVPGYPGAPGKDGIPGIPGEKGER 1052
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G+ G G+PG EPGL GIPG G G+PG GL GKDG+PG+ G
Sbjct: 1331 MKGEPGIPGYPGIPGAKGEPGLPGIPGAKGEPGLPGLPGLRGKDGLPGSPG 1381
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G GL G+DGLPG PG+ G+PG G G G G PG G+PG G K +
Sbjct: 1364 LPGLPGLRGKDGLPGSPGVAGLPGLPGAKGDVGLSGAPGAPGLPGLPGLKGE 1415
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 29/50 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G GLPG PG DG+PG G+ G G G PGKDG PG G K +
Sbjct: 1244 GAPGYPGVKGLPGFPGKDGLPGLPGIKGDAGIQGPPGKDGFPGLPGQKGE 1293
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G GL G GLPG+ G G+PG G G PG+ GLPG G+PG G
Sbjct: 1146 LKGEPGLAGLPGLPGQIGAPGLPGPKGDAGFPGQAGLPGAPGLPGKMG 1193
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G GL G G GEPGL G+PG G DG+PG G+ G G+PG G
Sbjct: 1348 GEPGLPGIPGAKGEPGLPGLPGLRGKDGLPGSPGVAGLPGLPGAKG 1393
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 29/50 (58%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I+G G G GLPG+ GL G+PG G GIPG G+PG G PG G
Sbjct: 1305 ASIAGLKGSPGAPGLPGKDGLPGLPGMKGEPGIPGYPGIPGAKGEPGLPG 1354
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 36/67 (53%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
++G GL G+ G PG PG G G G G+PG GLPGK G+PG G K GA
Sbjct: 1152 LAGLPGLPGQIGAPGLPGPKGDAGFPGQAGLPGAPGLPGKMGVPGIRGDKGSPGIPGAYG 1211
Query: 87 KSFSDGV 93
+ DG+
Sbjct: 1212 ERGLDGL 1218
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKDGIPGTNGTKTD 78
I G G GR G PG GLDG PG G+ G P G GLPG+ G PG G K D
Sbjct: 1119 IPGLPGKQGRPGAPGPKGLDGAPGFPGLKGEPGLAGLPGLPGQIGAPGLPGPKGD 1173
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPG 71
++G + G G G+DGLPG PG+ G PG++G G+PG+ G G G+PG
Sbjct: 1242 NVGAPGYPGVKGLPGFPGKDGLPGLPGIKGDAGIQGPPGKDGFPGLPGQKGEAGLPGLPG 1301
Query: 72 TNGT 75
+ G
Sbjct: 1302 SPGA 1305
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G+ G G PG+ G DG+PG G+ G+ G GLPG G+PG +G
Sbjct: 932 AGPPGVAGLPGFPGQKGEDGLPGLPGVAGLKGDAGLPGAPGLPGADG 978
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GL G PG G+PG++G+ G+PG G PG G PG G K +
Sbjct: 1309 GLKGSPGAPGLPGKDGLPGLPGMKGEPGIPGYPGIPGAKGE 1349
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G GLPGE G+ G+PG+ G G PG GL G G PG G
Sbjct: 1109 GAPGLPGEKGIPGLPGKQGRPGAPGPKGLDGAPGFPGLKG 1148
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 25/43 (58%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G GLPG PG+DG+PG+ G G PG G G G PG G
Sbjct: 897 GFKGDAGLPGPPGVDGLPGQKGDAGFPGLPGAEGPAGPPGVAG 939
>gi|345325217|ref|XP_001506552.2| PREDICTED: collagen alpha-1(XX) chain [Ornithorhynchus anatinus]
Length = 1592
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 25/48 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G G PG G G G GM G PG GLPG+DG+ G G +
Sbjct: 1103 GEQGTPGLKGPPGNKGEKGEEGHQGMQGYPGHPGLPGRDGLQGPKGMR 1150
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 15/63 (23%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---------------GIPGTN 73
G G +G G+ G PG G+PGR+G+ G G GL G G PGTN
Sbjct: 1118 GEKGEEGHQGMQGYPGHPGLPGRDGLQGPKGMRGLEGTAGLPGPPGPRGFQGMAGAPGTN 1177
Query: 74 GTK 76
G K
Sbjct: 1178 GQK 1180
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 30 RIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
R G G G PG G G G G +G G G PG G+PG +G +
Sbjct: 1098 RRGAQGEQGTPGLKGPPGNKGEKGEEGHQGMQGYPGHPGLPGRDGLQ 1144
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G G G G GE G G+ G G G+PG+DGL G G+ G
Sbjct: 1109 GLKGPPGNKGEKGEEGHQGMQGYPGHPGLPGRDGLQGPKGMRG 1151
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 27/70 (38%), Gaps = 24/70 (34%)
Query: 29 GRIGLDGRDGLPGEPGLDGI---------------------PGRNGMDGIPGK---DGLP 64
G GL GRDGL G G+ G+ PG NG G PG GLP
Sbjct: 1133 GHPGLPGRDGLQGPKGMRGLEGTAGLPGPPGPRGFQGMAGAPGTNGQKGPPGDVGPTGLP 1192
Query: 65 GKDGIPGTNG 74
G G G G
Sbjct: 1193 GPKGERGEKG 1202
>gi|301768323|ref|XP_002919574.1| PREDICTED: complement C1q subcomponent subunit C-like isoform 1
[Ailuropoda melanoleuca]
gi|301768325|ref|XP_002919575.1| PREDICTED: complement C1q subcomponent subunit C-like isoform 2
[Ailuropoda melanoleuca]
gi|281352013|gb|EFB27597.1| hypothetical protein PANDA_008220 [Ailuropoda melanoleuca]
Length = 245
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 28/42 (66%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G+PG PGL G PG++G DG+PG G PG IPGT G K
Sbjct: 31 GCYGIPGMPGLPGAPGKDGYDGLPGPKGEPGIPAIPGTRGPK 72
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 28 SGRIGLDGRDGLPGEPG---LDGIPGRNGMDGIP---------GKDGLPGKDGIPGTNG 74
+G G+ G GLPG PG DG+PG G GIP G+ G PG G PG NG
Sbjct: 30 TGCYGIPGMPGLPGAPGKDGYDGLPGPKGEPGIPAIPGTRGPKGQKGEPGTPGFPGKNG 88
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 20/34 (58%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG 65
G G G GEPG G PG+NG G PG GLPG
Sbjct: 67 GTRGPKGQKGEPGTPGFPGKNGPMGTPGIPGLPG 100
>gi|384110812|gb|AFH66973.1| ficolin, partial [Enhydris polylepis]
Length = 223
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 21 RAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPGTNG 74
R IS +I L G+ G+PG PG+ GI G G++G+PG GL G+ DGIPG G
Sbjct: 37 RTEHQCISDKIILQGQPGIPGIPGVPGINGSEGLNGVPGPQGLSGEIGFDGIPGVAG 93
>gi|282599427|ref|YP_003358317.1| hypothetical protein PP-LUZ7_gp035 [Pseudomonas phage LUZ7]
gi|259048526|emb|CAZ66176.1| hypothetical protein [Pseudomonas phage LUZ7]
Length = 229
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK---TDHYAMGADTKSF 89
G PG PG DG PG G DG PGKDG PGKDG PG+ + T+ Y + A +F
Sbjct: 95 GNPGAPGKDGNPGAPGKDGAPGKDGAPGKDGDPGSVSIRHLTTNPYTIQAGDDNF 149
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 22 AISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
A + G G G+DG PG PG DG PG+ DG PGKDG PG I
Sbjct: 88 AFIASLKGNPGAPGKDGNPGAPGKDGAPGK---DGAPGKDGDPGSVSI 132
>gi|395732594|ref|XP_002812713.2| PREDICTED: collagen alpha-1(III) chain isoform 1 [Pongo abelii]
Length = 1394
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 38/72 (52%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A + G G DG+DG PGEPG +G+PG G G PG G G +GIPG
Sbjct: 442 EPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 501
Query: 72 TNGTKTDHYAMG 83
G + A G
Sbjct: 502 EKGPAGERGAPG 513
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G GIPG G+ G G G NG K + A G
Sbjct: 227 AGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPG 282
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 28 SGRIGLDGRDGLPGEPGLDG---IPG------------RNGMDGIPGKDGLPGKDGIPGT 72
SGR G G GLPG PG+ G IPG RNG G G GL G++G+PG
Sbjct: 233 SGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGE 292
Query: 73 NGT 75
NG
Sbjct: 293 NGA 295
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
GR G G G PG G +G+PG NG G G G P G+ G+PG G + + A G
Sbjct: 268 FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
Query: 84 AD 85
+D
Sbjct: 328 SD 329
>gi|308510224|ref|XP_003117295.1| CRE-BLI-1 protein [Caenorhabditis remanei]
gi|308242209|gb|EFO86161.1| CRE-BLI-1 protein [Caenorhabditis remanei]
Length = 944
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G+ GRDG PG G G G G+ G PGKDG PG DG PG +
Sbjct: 511 GVMGVPGRDGDPGTDGEHGQDGSPGIQGPPGKDGRPGADGQPGVSA 556
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 17/64 (26%)
Query: 28 SGRIGLDGRDGL--------PGEPGLDGIPGRNG---------MDGIPGKDGLPGKDGIP 70
+G+ G+ GR+G PG+PG+ G+PGR+G DG PG G PGKDG P
Sbjct: 487 AGKPGVPGRNGQSCRSIPGPPGQPGVMGVPGRDGDPGTDGEHGQDGSPGIQGPPGKDGRP 546
Query: 71 GTNG 74
G +G
Sbjct: 547 GADG 550
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG-----IPGTNGTKTDHYA 81
+ G G +G+DG PG PG G G NG G GK G+PG++G IPG G
Sbjct: 456 VDGEQGSNGQDGQPGAPGAPGYHGMNGSPGTAGKPGVPGRNGQSCRSIPGPPGQPGVMGV 515
Query: 82 MGADTKSFSDG 92
G D +DG
Sbjct: 516 PGRDGDPGTDG 526
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 14/78 (17%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMD--------------GIPGKDGLPGKDGIPGTNG 74
G G G +G PG G G+PGRNG G+PG+DG PG DG G +G
Sbjct: 473 GAPGYHGMNGSPGTAGKPGVPGRNGQSCRSIPGPPGQPGVMGVPGRDGDPGTDGEHGQDG 532
Query: 75 TKTDHYAMGADTKSFSDG 92
+ G D + +DG
Sbjct: 533 SPGIQGPPGKDGRPGADG 550
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG--KDGIPGTNG 74
+ GR G G DG G+ G GI G G DG PG DG PG G PGT+G
Sbjct: 515 VPGRDGDPGTDGEHGQDGSPGIQGPPGKDGRPGADGQPGVSAPGAPGTDG 564
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 42 EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
E G+DG G NG DG PG G PG G+ G+ GT
Sbjct: 453 EDGVDGEQGSNGQDGQPGAPGAPGYHGMNGSPGT 486
>gi|402888874|ref|XP_003907767.1| PREDICTED: collagen alpha-1(III) chain [Papio anubis]
Length = 1466
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 38/72 (52%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A + G G DG+DG PGEPG +G+PG G G PG G G +GIPG
Sbjct: 442 EPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 501
Query: 72 TNGTKTDHYAMG 83
G + A G
Sbjct: 502 EKGPAGERGAPG 513
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G GIPG G+ G G G NG K + A G
Sbjct: 227 AGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPG 282
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 28 SGRIGLDGRDGLPGEPGLDG---IPG------------RNGMDGIPGKDGLPGKDGIPGT 72
SGR G G GLPG PG+ G IPG RNG G G GL G++G+PG
Sbjct: 233 SGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGE 292
Query: 73 NGT 75
NG
Sbjct: 293 NGA 295
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
GR G G G PG G +G+PG NG G G G P G+ G+PG G + + A G
Sbjct: 268 FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
Query: 84 AD 85
+D
Sbjct: 328 SD 329
>gi|20380052|gb|AAH28178.1| COL3A1 protein [Homo sapiens]
Length = 1163
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 38/72 (52%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A + G G DG+DG PGEPG +G+PG G G PG G G +GIPG
Sbjct: 442 EPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 501
Query: 72 TNGTKTDHYAMG 83
G + A G
Sbjct: 502 EKGPAGERGAPG 513
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G GIPG G+ G G G NG K + A G
Sbjct: 227 AGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPG 282
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 28 SGRIGLDGRDGLPGEPGLDG---IPG------------RNGMDGIPGKDGLPGKDGIPGT 72
SGR G G GLPG PG+ G IPG RNG G G GL G++G+PG
Sbjct: 233 SGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGE 292
Query: 73 NGT 75
NG
Sbjct: 293 NGA 295
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
GR G G G PG G +G+PG NG G G G P G+ G+PG G + + A G
Sbjct: 268 FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
Query: 84 AD 85
+D
Sbjct: 328 SD 329
>gi|4502951|ref|NP_000081.1| collagen alpha-1(III) chain preproprotein [Homo sapiens]
gi|114582176|ref|XP_001163809.1| PREDICTED: collagen alpha-1(III) chain isoform 10 [Pan troglodytes]
gi|30058|emb|CAA32583.1| prepro-alpha-1 type 3 collagen [Homo sapiens]
gi|16197601|gb|AAL13167.1| type III preprocollagen alpha 1 chain [Homo sapiens]
gi|119631315|gb|EAX10910.1| collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV,
autosomal dominant), isoform CRA_b [Homo sapiens]
gi|119631316|gb|EAX10911.1| collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV,
autosomal dominant), isoform CRA_b [Homo sapiens]
gi|168277510|dbj|BAG10733.1| collagen alpha-1(III) chain precursor [synthetic construct]
Length = 1466
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 38/72 (52%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A + G G DG+DG PGEPG +G+PG G G PG G G +GIPG
Sbjct: 442 EPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 501
Query: 72 TNGTKTDHYAMG 83
G + A G
Sbjct: 502 EKGPAGERGAPG 513
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G GIPG G+ G G G NG K + A G
Sbjct: 227 AGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPG 282
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 28 SGRIGLDGRDGLPGEPGLDG---IPG------------RNGMDGIPGKDGLPGKDGIPGT 72
SGR G G GLPG PG+ G IPG RNG G G GL G++G+PG
Sbjct: 233 SGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGE 292
Query: 73 NGT 75
NG
Sbjct: 293 NGA 295
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
GR G G G PG G +G+PG NG G G G P G+ G+PG G + + A G
Sbjct: 268 FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
Query: 84 AD 85
+D
Sbjct: 328 SD 329
>gi|332209567|ref|XP_003253886.1| PREDICTED: collagen alpha-1(III) chain [Nomascus leucogenys]
Length = 1466
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 38/72 (52%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A + G G DG+DG PGEPG +G+PG G G PG G G +GIPG
Sbjct: 442 EPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 501
Query: 72 TNGTKTDHYAMG 83
G + A G
Sbjct: 502 EKGPAGERGAPG 513
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GRA +G GL G +GLPGE +G PG G G PG+ G P G+PG G + +
Sbjct: 270 GRAGEKGETGAPGLKGENGLPGE---NGAPGPMGPRGTPGERGRP---GLPGAAGARGND 323
Query: 80 YAMGAD 85
A G+D
Sbjct: 324 GARGSD 329
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGK------DGIPGTNGTKTD 78
GLPG PG +G PG G G PGKDG PG G PG +G K D
Sbjct: 879 GLPGPPGSNGNPGPPGASGSPGKDGPPGPAGNTGAPGSPGVSGPKGD 925
>gi|124056490|sp|P02461.4|CO3A1_HUMAN RecName: Full=Collagen alpha-1(III) chain; Flags: Precursor
gi|62988777|gb|AAY24164.1| unknown [Homo sapiens]
gi|270048012|gb|ACZ58371.1| collagen, type III, alpha 1 [Homo sapiens]
Length = 1466
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 38/72 (52%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A + G G DG+DG PGEPG +G+PG G G PG G G +GIPG
Sbjct: 442 EPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 501
Query: 72 TNGTKTDHYAMG 83
G + A G
Sbjct: 502 EKGPAGERGAPG 513
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G GIPG G+ G G G NG K + A G
Sbjct: 227 AGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPG 282
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 28 SGRIGLDGRDGLPGEPGLDG---IPG------------RNGMDGIPGKDGLPGKDGIPGT 72
SGR G G GLPG PG+ G IPG RNG G G GL G++G+PG
Sbjct: 233 SGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGE 292
Query: 73 NGT 75
NG
Sbjct: 293 NGA 295
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
GR G G G PG G +G+PG NG G G G P G+ G+PG G + + A G
Sbjct: 268 FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
Query: 84 AD 85
+D
Sbjct: 328 SD 329
>gi|384535351|ref|YP_005719436.1| hypothetical protein SM11_chr0898 [Sinorhizobium meliloti SM11]
gi|336032243|gb|AEH78175.1| hypothetical protein SM11_chr0898 [Sinorhizobium meliloti SM11]
Length = 387
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
D+ ++ V G G G G GE G G PG++G DG PGKDG GK+G PG NG +
Sbjct: 45 DLSERVAAVRDGMPGAQGERGEQGEKGDPGPPGKDGNDGAPGKDGADGKEGPPGDNGKRG 104
Query: 78 DHYAMG 83
++ G
Sbjct: 105 ENGERG 110
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 27/44 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+G G G G GE G G PG++G DG PGKDG GK+G PG
Sbjct: 130 TGPTGPQGEKGEQGEKGDPGPPGKDGDDGAPGKDGTDGKEGPPG 173
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 37/81 (45%)
Query: 3 RVQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG 62
R + VL++ +R R G G G G PG PG DG G G DG GK+G
Sbjct: 36 RAEQKTIVLDLSERVAAVRDGMPGAQGERGEQGEKGDPGPPGKDGNDGAPGKDGADGKEG 95
Query: 63 LPGKDGIPGTNGTKTDHYAMG 83
PG +G G NG + + G
Sbjct: 96 PPGDNGKRGENGERGERGETG 116
>gi|397509824|ref|XP_003825312.1| PREDICTED: collagen alpha-1(III) chain [Pan paniscus]
Length = 1466
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 38/72 (52%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A + G G DG+DG PGEPG +G+PG G G PG G G +GIPG
Sbjct: 442 EPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 501
Query: 72 TNGTKTDHYAMG 83
G + A G
Sbjct: 502 EKGPAGERGAPG 513
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G GIPG G+ G G G NG K + A G
Sbjct: 227 AGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPG 282
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 28 SGRIGLDGRDGLPGEPGLDG---IPG------------RNGMDGIPGKDGLPGKDGIPGT 72
SGR G G GLPG PG+ G IPG RNG G G GL G++G+PG
Sbjct: 233 SGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGE 292
Query: 73 NGT 75
NG
Sbjct: 293 NGA 295
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
GR G G G PG G +G+PG NG G G G P G+ G+PG G + + A G
Sbjct: 268 FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
Query: 84 AD 85
+D
Sbjct: 328 SD 329
>gi|426338026|ref|XP_004032993.1| PREDICTED: collagen alpha-1(III) chain [Gorilla gorilla gorilla]
Length = 1466
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 38/72 (52%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A + G G DG+DG PGEPG +G+PG G G PG G G +GIPG
Sbjct: 442 EPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 501
Query: 72 TNGTKTDHYAMG 83
G + A G
Sbjct: 502 EKGPAGERGAPG 513
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G GIPG G+ G G G NG K + A G
Sbjct: 227 AGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPG 282
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 28 SGRIGLDGRDGLPGEPGLDG---IPG------------RNGMDGIPGKDGLPGKDGIPGT 72
SGR G G GLPG PG+ G IPG RNG G G GL G++G+PG
Sbjct: 233 SGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGE 292
Query: 73 NGT 75
NG
Sbjct: 293 NGA 295
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
GR G G G PG G +G+PG NG G G G P G+ G+PG G + + A G
Sbjct: 268 FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
Query: 84 AD 85
+D
Sbjct: 328 SD 329
>gi|410350899|gb|JAA42053.1| collagen, type III, alpha 1 [Pan troglodytes]
Length = 1466
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 38/72 (52%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A + G G DG+DG PGEPG +G+PG G G PG G G +GIPG
Sbjct: 442 EPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 501
Query: 72 TNGTKTDHYAMG 83
G + A G
Sbjct: 502 EKGPAGERGAPG 513
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G GIPG G+ G G G NG K + A G
Sbjct: 227 AGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPG 282
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 28 SGRIGLDGRDGLPGEPGLDG---IPG------------RNGMDGIPGKDGLPGKDGIPGT 72
SGR G G GLPG PG+ G IPG RNG G G GL G++G+PG
Sbjct: 233 SGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGE 292
Query: 73 NGT 75
NG
Sbjct: 293 NGA 295
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
GR G G G PG G +G+PG NG G G G P G+ G+PG G + + A G
Sbjct: 268 FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
Query: 84 AD 85
+D
Sbjct: 328 SD 329
>gi|291391890|ref|XP_002712379.1| PREDICTED: collagen type III alpha 1 [Oryctolagus cuniculus]
Length = 1462
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 34/63 (53%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A S I G G DG+DG PGEPG +G+PG G G PG G G G PG
Sbjct: 440 EPGPRGERGEAGSPGIPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPSGTPG 499
Query: 72 TNG 74
G
Sbjct: 500 EKG 502
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G G+PG G+ G G G NG K + A G
Sbjct: 225 AGKDGESGRPGRPGERGLPGPPGIKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPG 280
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR + G G+ G G+PG PG+ G GRNG G G GL G++G+PG NG
Sbjct: 235 GRPGERGLPGPPGIKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGA 293
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
GR G G G PG G +G+PG NG G G G P G+ G+PG G + + A G
Sbjct: 266 FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 325
Query: 84 AD 85
+D
Sbjct: 326 SD 327
>gi|441620910|ref|XP_003265447.2| PREDICTED: collagen alpha-6(VI) chain [Nomascus leucogenys]
Length = 2264
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 30/49 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G +G +G DGL GE G +G+PGR G G G G PGK G PG +G K
Sbjct: 1458 EGEVGENGIDGLNGEQGDNGLPGRKGEKGNEGSQGSPGKRGTPGDHGAK 1506
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTKTDHYAMG 83
G GL+G++G GE G+DG+ G G +G+PG+ G G + G PG GT DH A G
Sbjct: 1450 GNRGLNGQEGEVGENGIDGLNGEQGDNGLPGRKGEKGNEGSQGSPGKRGTPGDHGAKG 1507
>gi|359078486|ref|XP_003587710.1| PREDICTED: collagen alpha-1(XXI) chain [Bos taurus]
Length = 952
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + I G+ GL G G PG+PG G PGR G DG PG G+ G G+PG+ G
Sbjct: 431 DVGSTAAPCICPPGKPGLQGPKGDPGQPGNPGYPGRPGQDGKPGYQGIAGSPGVPGSPGI 490
Query: 76 K 76
+
Sbjct: 491 Q 491
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 19 IGRAISTVISGRIGLDGRDGLP---------GEPGLDGIPGRNGMDGIPGKDGLPGKD-- 67
+G+ + I G +G DG G P GEPGL G+PG +G+ G PG G PG+
Sbjct: 623 LGKKGAPGIPGLMGSDGSPGQPGAPGSKGTKGEPGLQGLPGASGLKGEPGAVGPPGEPGY 682
Query: 68 -GIPGTNGTKTDH 79
G+PG G K D
Sbjct: 683 LGLPGIQGKKGDK 695
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G+ T G +G G G+PG G DG PG+ G G G G PG G+PG +G K +
Sbjct: 611 MGQKGDTGPPGPLGKKGAPGIPGLMGSDGSPGQPGAPGSKGTKGEPGLQGLPGASGLKGE 670
Query: 79 HYAMG 83
A+G
Sbjct: 671 PGAVG 675
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G A S + G G+ G GLP GEPG DG G G+ G PG G+PG G G G K
Sbjct: 477 GIAGSPGVPGSPGIQGAQGLPGYKGEPGRDGEKGDRGLPGFPGLHGIPGSKGEMGPKGDK 536
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 18 DIGRAISTVISGRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D G+ + GR G DG+ G+ G PG+ G PG G G+PG G PG+DG G G
Sbjct: 454 DPGQPGNPGYPGRPGQDGKPGYQGIAGSPGVPGSPGIQGAQGLPGYKGEPGRDGEKGDRG 513
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G G PG G+ G+PG++G G G+
Sbjct: 841 GLPGRDGVPGLMGAPGRPGVKGLKGLPGRNGAKGSQGL 878
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 25/47 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G G PG PG G PGR+G DG+ G G G+ G PG G
Sbjct: 545 KGAKGEQGNAGFPGLPGRAGEPGRHGKDGLMGSPGFKGEAGPPGAPG 591
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G+ G G+PG PG+ G G G G PG+DG G G+PG G
Sbjct: 474 GYQGIAGSPGVPGSPGIQGAQGLPGYKGEPGRDGEKGDRGLPGFPG 519
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 21/70 (30%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGM------------------DGIPG---KDGLPGK 66
+G G G+DG GEPG+ G PG G+ GIPG DG PG+
Sbjct: 584 AGPPGAPGQDGSRGEPGIPGFPGNQGLMGQKGDTGPPGPLGKKGAPGIPGLMGSDGSPGQ 643
Query: 67 DGIPGTNGTK 76
G PG+ GTK
Sbjct: 644 PGAPGSKGTK 653
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 25/48 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GR G G GLPG PGL GIPG G G G G PG G G G +
Sbjct: 504 GRDGEKGDRGLPGFPGLHGIPGSKGEMGPKGDKGAPGFYGKKGAKGEQ 551
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 28/55 (50%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GRA G+ GL G G GE G G PG++G G PG G PG G+ G G
Sbjct: 561 GRAGEPGRHGKDGLMGSPGFKGEAGPPGAPGQDGSRGEPGIPGFPGNQGLMGQKG 615
>gi|270007027|gb|EFA03475.1| hypothetical protein TcasGA2_TC013472 [Tribolium castaneum]
Length = 1808
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Query: 15 DRRDIGRAISTV-----ISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGK 66
D+ IG++I + + G G+DGR G+P GEPG G+PG G G PG+ G PG
Sbjct: 1152 DKGTIGQSIPGLKGEPGVPGNPGIDGRPGIPGLKGEPGFPGLPGMKGDRGFPGERGAPGI 1211
Query: 67 DGIPGTNGTKTD 78
DGI G G K D
Sbjct: 1212 DGISGEKGDKGD 1223
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 18/69 (26%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPG---------------RNGMDGIPGKDGLPGKD---GIP 70
G G G+ G+PG PG++G+PG NG DG+PG DGLPG+ G P
Sbjct: 221 GPKGERGKMGVPGFPGINGVPGLQGPPGHPGLPGLDGCNGTDGLPGLDGLPGEQGPRGFP 280
Query: 71 GTNGTKTDH 79
GT G K D
Sbjct: 281 GTPGIKGDK 289
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G IG G GLPG PG+ G G DG G DG PG+ GIPG G K
Sbjct: 728 LPGSIGPKGEPGLPGFPGIKG---DRGFDGYRGSDGRPGEPGIPGVKGEK 774
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 37/82 (45%), Gaps = 14/82 (17%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGE-----------PGLDG---IPGRNGMDGI 57
+V ++ G + G GL GR G PG PGL G +PG G+DG
Sbjct: 1119 DVSEKGQKGEPGIPGLRGPPGLSGRQGFPGPKGDKGTIGQSIPGLKGEPGVPGNPGIDGR 1178
Query: 58 PGKDGLPGKDGIPGTNGTKTDH 79
PG GL G+ G PG G K D
Sbjct: 1179 PGIPGLKGEPGFPGLPGMKGDR 1200
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 23/73 (31%)
Query: 29 GRIGLDGRDGLPGEPGLDGI-----------------------PGRNGMDGIPGKDGLPG 65
G +G GRDG PG PGL G G G+ G+PGK G+PG
Sbjct: 882 GFVGEKGRDGAPGIPGLAGTRGQKGEPGIPAIGPPGPPGPFGFKGEKGLPGLPGKTGVPG 941
Query: 66 KDGIPGTNGTKTD 78
+ G+PG G K D
Sbjct: 942 QPGLPGLMGEKGD 954
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMD-----GIPGKDGLPGKDGIPGTNGTK 76
G G DG PGEPG+ G+ G G G PG+ G PG+ G GT G K
Sbjct: 754 GYRGSDGRPGEPGIPGVKGEKGTSVKGEPGFPGQPGRPGQKGDEGTPGEK 803
>gi|94994324|ref|YP_602422.1| Collagen-like surface protein [Streptococcus pyogenes MGAS10750]
gi|94547832|gb|ABF37878.1| Collagen-like surface protein [Streptococcus pyogenes MGAS10750]
Length = 428
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+G+ G +G+DGLPG+ G DG G++G+ G GKDG GKDG+PG +T DT
Sbjct: 283 AGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDGKDGLPGKPAPQTPEVPQKPDT 341
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 35/52 (67%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK 66
+R IG A +G+ GL G+DG G+ G DG+PG++G DG GKDGLPGK
Sbjct: 276 ERGPIGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDGKDGLPGK 327
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G IG G+DG + G DG+PG++G DG GKDGLPGKDG G +G
Sbjct: 278 GPIGPAGKDG---QNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQDG 320
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG---LPGKDGIPGTNG 74
G G G+DG G G G G+NG DG+PGKDG GKDG+PG +G
Sbjct: 265 KGEQGPAGKDGERGPIGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDG 314
>gi|358418270|ref|XP_003583883.1| PREDICTED: collagen alpha-1(XXI) chain [Bos taurus]
Length = 957
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + I G+ GL G G PG+PG G PGR G DG PG G+ G G+PG+ G
Sbjct: 436 DVGSTAAPCICPPGKPGLQGPKGDPGQPGNPGYPGRPGQDGKPGYQGIAGSPGVPGSPGI 495
Query: 76 K 76
+
Sbjct: 496 Q 496
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 19 IGRAISTVISGRIGLDGRDGLP---------GEPGLDGIPGRNGMDGIPGKDGLPGKD-- 67
+G+ + I G +G DG G P GEPGL G+PG +G+ G PG G PG+
Sbjct: 628 LGKKGAPGIPGLMGSDGSPGQPGAPGSKGTKGEPGLQGLPGASGLKGEPGAVGPPGEPGY 687
Query: 68 -GIPGTNGTKTDH 79
G+PG G K D
Sbjct: 688 LGLPGIQGKKGDK 700
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G+ T G +G G G+PG G DG PG+ G G G G PG G+PG +G K +
Sbjct: 616 MGQKGDTGPPGPLGKKGAPGIPGLMGSDGSPGQPGAPGSKGTKGEPGLQGLPGASGLKGE 675
Query: 79 HYAMG 83
A+G
Sbjct: 676 PGAVG 680
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G A S + G G+ G GLP GEPG DG G G+ G PG G+PG G G G K
Sbjct: 482 GIAGSPGVPGSPGIQGAQGLPGYKGEPGRDGEKGDRGLPGFPGLHGIPGSKGEMGPKGDK 541
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 18 DIGRAISTVISGRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D G+ + GR G DG+ G+ G PG+ G PG G G+PG G PG+DG G G
Sbjct: 459 DPGQPGNPGYPGRPGQDGKPGYQGIAGSPGVPGSPGIQGAQGLPGYKGEPGRDGEKGDRG 518
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G G PG G+ G+PG++G G G+
Sbjct: 846 GLPGRDGVPGLMGAPGRPGVKGLKGLPGRNGAKGSQGL 883
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 25/47 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G G PG PG G PGR+G DG+ G G G+ G PG G
Sbjct: 550 KGAKGEQGNAGFPGLPGRAGEPGRHGKDGLMGSPGFKGEAGPPGAPG 596
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 21/70 (30%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGM------------------DGIPG---KDGLPGK 66
+G G G+DG GEPG+ G PG G+ GIPG DG PG+
Sbjct: 589 AGPPGAPGQDGSRGEPGIPGFPGNQGLMGQKGDTGPPGPLGKKGAPGIPGLMGSDGSPGQ 648
Query: 67 DGIPGTNGTK 76
G PG+ GTK
Sbjct: 649 PGAPGSKGTK 658
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G+ G G+PG PG+ G G G G PG+DG G G+PG G
Sbjct: 479 GYQGIAGSPGVPGSPGIQGAQGLPGYKGEPGRDGEKGDRGLPGFPG 524
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 25/48 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GR G G GLPG PGL GIPG G G G G PG G G G +
Sbjct: 509 GRDGEKGDRGLPGFPGLHGIPGSKGEMGPKGDKGAPGFYGKKGAKGEQ 556
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 28/55 (50%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GRA G+ GL G G GE G G PG++G G PG G PG G+ G G
Sbjct: 566 GRAGEPGRHGKDGLMGSPGFKGEAGPPGAPGQDGSRGEPGIPGFPGNQGLMGQKG 620
>gi|308493719|ref|XP_003109049.1| CRE-BLI-2 protein [Caenorhabditis remanei]
gi|308247606|gb|EFO91558.1| CRE-BLI-2 protein [Caenorhabditis remanei]
Length = 311
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G +G+DGLPG PGL G PG G DG PG+DG PG+ PG NG
Sbjct: 181 KGQSGRNGKDGLPGVPGLPGQPGEPGEDGEPGEDGDPGQ---PGENG 224
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 28 SGRIGLDGRDGL------PGEPGLDGIPGRNGMDGIPGKDGLPGK 66
SGR G DG G+ PGEPG DG PG +G G PG++G PGK
Sbjct: 184 SGRNGKDGLPGVPGLPGQPGEPGEDGEPGEDGDPGQPGENGEPGK 228
>gi|291220790|ref|XP_002730406.1| PREDICTED: COL9A1 protein-like [Saccoglossus kowalevskii]
Length = 879
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 36/66 (54%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G S I G G G+ G G PG+ G+PG G G PG++G PGKDGI GT G K +
Sbjct: 453 GEPGSPGIPGMTGFKGQPGASGFPGMPGMPGFKGHKGHPGRNGEPGKDGIDGTKGQKGEA 512
Query: 80 YAMGAD 85
G D
Sbjct: 513 GPRGRD 518
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 26/44 (59%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
L G G+PGEPG GIPG G G PG G PG G+PG G K
Sbjct: 445 LRGDVGVPGEPGSPGIPGMTGFKGQPGASGFPGMPGMPGFKGHK 488
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
T SG + +G PG PG++G G G +G G GLPG +G+PG G + + GA
Sbjct: 255 TDESGDCPITCPEGPPGAPGINGPQGLPGSNGPQGPQGLPGANGLPGVRGPPGEKGSQGA 314
Query: 85 DTKSFSDGV 93
+ G+
Sbjct: 315 SGPTGRQGI 323
>gi|403310247|emb|CCJ09598.1| Nacrein-like 1 protein [Patella vulgata]
Length = 1452
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 33/60 (55%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+R G ST G G GR+GLPG PG G PG G G PG+ G PG DG PG+ G
Sbjct: 960 ERGPTGPPGSTGARGEAGRRGRNGLPGSPGPVGNPGNPGAVGEPGQSGPPGNDGTPGSTG 1019
>gi|341890293|gb|EGT46228.1| hypothetical protein CAEBREN_30715 [Caenorhabditis brenneri]
Length = 289
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
+G G DG G PGE G +G PG+ G DG PG+ G PG+DG PG G + A+
Sbjct: 223 AGEPGKDGAPGGPGEKGANGEPGQPGRDGQPGRPGQPGRDGHPGEKGVCPKYCAL 277
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 23/39 (58%)
Query: 36 RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G PGEPG G PG G G PGKDG PG G G NG
Sbjct: 204 QPGAPGEPGRPGQPGPRGAAGEPGKDGAPGGPGEKGANG 242
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 31/68 (45%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G GR G PG G G PG++G G PG+ G G+ G PG +G G D
Sbjct: 206 GAPGEPGRPGQPGPRGAAGEPGKDGAPGGPGEKGANGEPGQPGRDGQPGRPGQPGRDGHP 265
Query: 89 FSDGVLPS 96
GV P
Sbjct: 266 GEKGVCPK 273
>gi|308501333|ref|XP_003112851.1| CRE-EMB-9 protein [Caenorhabditis remanei]
gi|308265152|gb|EFP09105.1| CRE-EMB-9 protein [Caenorhabditis remanei]
Length = 1804
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 39/67 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G G+ G PGE GL GI G+ G DG+PG+ G PG DG+PGT G D GA
Sbjct: 1339 LPGVPGEPGQTGYPGERGLTGIDGKRGHDGLPGQPGAPGLDGVPGTEGDCGDDGYPGAPG 1398
Query: 87 KSFSDGV 93
+ S+G
Sbjct: 1399 QPGSNGY 1405
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK------DGLPGKDGIPGTNGTKTDHY 80
G G DG G PG+PG +G PG G+ G+PG+ +G PG+ GIPG G++ D
Sbjct: 1384 TEGDCGDDGYPGAPGQPGSNGYPGERGLPGVPGQQGRSGENGFPGQPGIPGLKGSRGDDG 1443
Query: 81 AMGAD 85
G D
Sbjct: 1444 FPGRD 1448
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIP---GRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+ GR G DG GLPG PG DG P G G+ GI GK G G G+PG G D Y
Sbjct: 661 LPGRQGNDGLPGLPGSPGQDGFPGLRGEPGLSGIDGKRGRQGSLGVPGFQGPPGDSYPGV 720
Query: 84 ADTKSF-----SDGV--LPSVQ--RAIAAGLVI 107
T F DG+ LP Q R I A L I
Sbjct: 721 PGTPGFKGERGQDGLPGLPGAQGPRGIPAPLRI 753
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 27 ISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPG---KDGLPGKDGIPGTNGTKTDHY 80
G++G G +G PG PG DG PGR+G+ G PG + G+ G+DG+PG GT+ +
Sbjct: 855 FPGQVGYPGPNGEPGAAGLPGSDGYPGRDGLPGTPGYPGEAGMNGQDGMPGLPGTRGESG 914
Query: 81 AMGADTKSFSDG 92
+G D K DG
Sbjct: 915 LVGIDGKKGRDG 926
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPGKDGIPGTNG 74
T I G+ G DG G PG PGLDG+PG G DG PG G PG +G PG G
Sbjct: 1358 TGIDGKRGHDGLPGQPGAPGLDGVPGTEGDCGDDGYPGAPGQPGSNGYPGERG 1410
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD--GLPGKDGIPGTNGTKTDHYAMGAD 85
G +G +G DG GEPGLDG PG G G PG+ G PG+ G PG NG G+D
Sbjct: 818 QGEVGYNGVDGDCGEPGLDGYPGVPGAPGAPGETGYGFPGQVGYPGPNGEPGAAGLPGSD 877
Query: 86 TKSFSDGV 93
DG+
Sbjct: 878 GYPGRDGL 885
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G+ G G +G PG+PG+ G+ G G DG PG+DGL DG+PG G
Sbjct: 1414 VPGQQGRSGENGFPGQPGIPGLKGSRGDDGFPGRDGL---DGVPGRPG 1458
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 28 SGRIGLDGRDGLPGEPGLDG-----------IPGRNGMDG---IPGKDGLPGKDGIPGTN 73
G GLDG G+PG PG G PG NG G +PG DG PG+DG+PGT
Sbjct: 830 CGEPGLDGYPGVPGAPGAPGETGYGFPGQVGYPGPNGEPGAAGLPGSDGYPGRDGLPGTP 889
Query: 74 GTKTDHYAMGAD 85
G + G D
Sbjct: 890 GYPGEAGMNGQD 901
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 32/57 (56%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G + + G G GRDGLPG PG G G NG DG+PG G G+ G+ G +G K
Sbjct: 866 GEPGAAGLPGSDGYPGRDGLPGTPGYPGEAGMNGQDGMPGLPGTRGESGLVGIDGKK 922
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 28/47 (59%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G DG G PGE G DG+PG G DG+PG +G PG G PG G +
Sbjct: 1013 GQDGLPGYPGEQGQDGLPGLPGADGLPGLNGEPGDSGSPGFRGQPGE 1059
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 23 ISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNG 74
++ ++ G G +G PGE G G+PG NG+ G PGK G P G+DG PG G
Sbjct: 1466 MAMLVRNPTGAPGDNGYPGEKGYPGLPGDNGLPGPPGKAGYPGASGQDGYPGPPG 1520
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNGTK 76
+ G GLDG+ G PG PG G PG G G PG+ +GLPG+DG PG G
Sbjct: 1214 LKGENGLDGQPGYPGSPGQLGSPGDVGYPGSPGENGDNGLPGRDGQPGLRGEN 1266
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 29/51 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G G G DG PG PG G PG G DG PG GL G+DG+ G G + +H
Sbjct: 944 GAPGQYGMDGYPGAPGDQGYPGAPGQDGYPGAPGLNGEDGLVGFPGLRGEH 994
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 20 GRAISTVISGRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR + I G GL+G +G PG PG G PG+ G +G G G+PG++G+PG G
Sbjct: 1150 GRQGNDGIPGAPGLEGECGDEGFPGAPGQPGYPGQQGREGEKGYPGMPGENGLPGLRG 1207
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E D G G+ G +G G PG PG +G+PG G DG+PG G G DG PG
Sbjct: 1166 ECGDEGFPGAPGQPGYPGQQGREGEKGYPGMPGENGLPGLRGQDGLPGLKGENGLDGQPG 1225
Query: 72 TNGT 75
G+
Sbjct: 1226 YPGS 1229
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GL G+ GL G+PGR G DG+PG G PG+DG PG G
Sbjct: 651 GLKGDRGLPGLPGRQGNDGLPGLPGSPGQDGFPGLRG 687
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G GL G +GLPG PG G PG +G DG PG GL G+ G G +G + +
Sbjct: 1487 GYPGLPGDNGLPGPPGKAGYPGASGQDGYPGPPGLNGQPGPSGDSGFQGE 1536
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
T + G G G+ GLPG G DGIPG G++G G +G PG G PG G +
Sbjct: 1134 TGMPGLKGESGQPGLPGRQGNDGIPGAPGLEGECGDEGFPGAPGQPGYPGQQ 1185
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 12/59 (20%)
Query: 28 SGRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---------GIPGTNG 74
SG+ GL GR DG+PG PGL+G G G G PG+ G PG+ G+PG NG
Sbjct: 1143 SGQPGLPGRQGNDGIPGAPGLEGECGDEGFPGAPGQPGYPGQQGREGEKGYPGMPGENG 1201
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
+ G G G+DGLPG PG DG+PG NG G G G G+ G PG
Sbjct: 1017 LPGYPGEQGQDGLPGLPGADGLPGLNGEPGDSGSPGFRGQPGEPGN 1062
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK------DGLPGKDGIPGTN 73
G T G GL G DG G GL G PG G+DG+PG DG PG G PG+N
Sbjct: 1344 GEPGQTGYPGERGLTGIDGKRGHDGLPGQPGAPGLDGVPGTEGDCGDDGYPGAPGQPGSN 1403
Query: 74 G 74
G
Sbjct: 1404 G 1404
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G+ GL G PG G DG+PG LPG DG+PG NG D + G
Sbjct: 1013 GQDGLPGYPGEQGQDGLPG---LPGADGLPGLNGEPGDSGSPG 1052
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G G+DG PG PGL+G PG +G G G+ G G G+PGT G
Sbjct: 1504 AGYPGASGQDGYPGPPGLNGQPGPSGDSGFQGERGRAGLPGLPGTPG 1550
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G GL G+DGLPG G +G+ G+ G G PG+ G PG G PG+ G D+ G D +
Sbjct: 1200 NGLPGLRGQDGLPGLKGENGLDGQPGYPGSPGQLGSPGDVGYPGSPGENGDNGLPGRDGQ 1259
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 23 ISTVISGRIGLDGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPGKDGIPGTNG 74
I ++G G+DG GLPG+ G DG+PG G DG PG G G DG+PG G
Sbjct: 753 IINQVAGEPGIDGLPGLPGDRGADGLPGLPGPVGPDGYPGTPGERGMDGLPGFPG 807
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR G G G+PGE GL G+ G++G+ G+ G++GL G+ G PG+ G
Sbjct: 1185 QGREGEKGYPGMPGENGLPGLRGQDGLPGLKGENGLDGQPGYPGSPG 1231
Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPG---RNGMDGIPGKDGLPGKDGIPG 71
G G+ G +GLPG G DG+PG NG+DG PG G PG+ G PG
Sbjct: 1192 GYPGMPGENGLPGLRGQDGLPGLKGENGLDGQPGYPGSPGQLGSPG 1237
>gi|119631314|gb|EAX10909.1| collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV,
autosomal dominant), isoform CRA_a [Homo sapiens]
Length = 1127
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 38/72 (52%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A + G G DG+DG PGEPG +G+PG G G PG G G +GIPG
Sbjct: 148 EPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 207
Query: 72 TNGTKTDHYAMG 83
G + A G
Sbjct: 208 EKGPAGERGAPG 219
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
GR G G G PG G +G+PG NG G G G P G+ G+PG G + + A G
Sbjct: 7 FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 66
Query: 84 AD 85
+D
Sbjct: 67 SD 68
>gi|11875612|gb|AAG40729.1| type IV collagen alpha 1 chain precursor [Hydra vulgaris]
Length = 1723
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 33/61 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G IG G G+PG+PG DG G G+ G G G PGK GIPG NG K + G +
Sbjct: 616 GSIGFKGEQGVPGDPGTDGPQGPQGLQGPQGDRGAPGKSGIPGNNGEKGEKGNKGDGLRG 675
Query: 89 F 89
F
Sbjct: 676 F 676
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G+DG+ G+ G G PG++G+DG PGKDGLPG G G G K
Sbjct: 927 GSPGEKGKDGISGKQGKPGPPGKDGVDGTPGKDGLPGNPGPEGPKGEK 974
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTK 76
G G PGE G DGI G+ G G PGKDG+ PGKDG+PG G +
Sbjct: 924 GEKGSPGEKGKDGISGKQGKPGPPGKDGVDGTPGKDGLPGNPGPE 968
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 22 AISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKDGIPGTNG 74
IS I G GL G PG+PGLDG PG++ G P GKDG PG G PGT G
Sbjct: 794 GISGPIKGEPGLKGD---PGKPGLDGAPGKSVPKGEPGRDGKDGDPGAKGEPGTPG 846
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDHYAMG 83
+ G IG+ G + GEPGL G PG+ G+DG PGK G PG+DG G G K + G
Sbjct: 789 LQGPIGISGP--IKGEPGLKGDPGKPGLDGAPGKSVPKGEPGRDGKDGDPGAKGEPGTPG 846
Query: 84 ADTKSFSDGVL 94
+ G +
Sbjct: 847 ESGRDGEKGEI 857
>gi|431838257|gb|ELK00189.1| Collagen alpha-1(XXI) chain [Pteropus alecto]
Length = 777
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + I G+ GL G G PG+PG G PG+ G DG PG G+ G G+PG+ GT
Sbjct: 432 DVGATPAPCICPPGKPGLQGPKGDPGQPGNPGYPGQPGQDGKPGYQGIAGSPGVPGSPGT 491
Query: 76 K 76
+
Sbjct: 492 E 492
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 26/49 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G G PG+PG DG PG G+ G PG G PG +G G G K
Sbjct: 453 KGDPGQPGNPGYPGQPGQDGKPGYQGIAGSPGVPGSPGTEGARGLPGYK 501
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 27/51 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G G G+DG PG G+ G PG G G G GLPG G PG +G K D
Sbjct: 463 GYPGQPGQDGKPGYQGIAGSPGVPGSPGTEGARGLPGYKGEPGRDGEKGDR 513
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G G PG G+ G+PG++G G G
Sbjct: 666 GLPGRDGVPGLMGAPGRPGARGLKGLPGRNGAKGSQGF 703
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G G G+ G PG+ G PG G G+PG G PG+DG G G
Sbjct: 469 GQDGKPGYQGIAGSPGVPGSPGTEGARGLPGYKGEPGRDGEKGDRG 514
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G A S + G G +G GLP GEPG DG G G+ G PG G+PG G G G K
Sbjct: 478 GIAGSPGVPGSPGTEGARGLPGYKGEPGRDGEKGDRGLPGFPGLHGMPGSKGEMGPRGDK 537
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G+ G G+PG PG +G G G G PG+DG G G+PG G
Sbjct: 475 GYQGIAGSPGVPGSPGTEGARGLPGYKGEPGRDGEKGDRGLPGFPG 520
>gi|339246491|ref|XP_003374879.1| collagen alpha-2(IV) chain [Trichinella spiralis]
gi|316971850|gb|EFV55577.1| collagen alpha-2(IV) chain [Trichinella spiralis]
Length = 1632
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 34/57 (59%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GR I G G G GLPG PGL G+ G G GIPGK+GLPG G+PGT G +
Sbjct: 748 GRMGVPGIRGEKGEPGAAGLPGVPGLPGLKGDQGFPGIPGKEGLPGAPGLPGTPGFQ 804
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
I G+ GL G GLPG PG G+ G +G+ GIPG GL G+ G+PG G+
Sbjct: 785 IPGKEGLPGAPGLPGTPGFQGLKGESGLPGIPGPAGLKGEPGMPGLPGS 833
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP------GKDGLPGKDGIPGTNGTKTD 78
+ G IG G G+ G+PGL GIPG GM GIP G GLPG G PG GTK D
Sbjct: 1247 LPGAIGEPGYPGIDGKPGLPGIPGAKGMAGIPGFPGLKGDPGLPGSPGAPGFPGTKGD 1304
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ + G A + G GL G G PG PG +G+PG G+ G PG GL G+ G+PG G
Sbjct: 758 EKGEPGAAGLPGVPGLPGLKGDQGFPGIPGKEGLPGAPGLPGTPGFQGLKGESGLPGIPG 817
Query: 75 T 75
Sbjct: 818 P 818
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 32 GLDGRDGLPG------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GL G DG PG EPGL G+PG+ G DG PG G G DG+PG G
Sbjct: 1116 GLPGLDGFPGQAGQKGEPGLPGLPGQQGQDGFPGPKGERGLDGLPGAPG 1164
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP------GKDGIPG 71
+ GR I G GLDG G PG+PG G PG G G+PG G P G G PG
Sbjct: 1048 EKGRMGVPGIRGEKGLDGLPGRPGQPGAAGFPGEKGDAGLPGMPGAPGFTGAKGDAGFPG 1107
Query: 72 TNGTKTDHYAMGAD 85
G K D G D
Sbjct: 1108 LPGAKGDRGLPGLD 1121
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIP---GRNGMDGIPGKDGLPGKDGIPGTNG 74
G GL G GLPGE G G+P G G+DG+PG+ G PG G PG G
Sbjct: 1035 GFPGLAGPPGLPGEKGRMGVPGIRGEKGLDGLPGRPGQPGAAGFPGEKG 1083
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 28/51 (54%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
SG G+ G GL GEPG+ G+PG G G PG G G G PG G K D
Sbjct: 810 SGLPGIPGPAGLKGEPGMPGLPGSPGTVGAPGFPGPKGNPGFPGLAGPKGD 860
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNG 74
G GLDG GLPG G G PG G G PG GLP G+DG PG G
Sbjct: 1190 TKGERGLDGLPGLPGPKGAPGYPGTPGQKGEPGLPGLPGERGRDGFPGPKG 1240
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTK 76
+G GL G G G PGLDG PG+ G G PG GLP G+DG PG G +
Sbjct: 1103 AGFPGLPGAKGDRGLPGLDGFPGQAGQKGEPGLPGLPGQQGQDGFPGPKGER 1154
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G+ G GL G+PGL G PG G G G G PG G+PG+ G K
Sbjct: 1273 GMAGIPGFPGLKGDPGLPGSPGAPGFPGTKGDAGFPGMPGVPGSKGDK 1320
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEP---GLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ GLDG+ G PGE GL G+PG+ G+DG+PG G G G+PG G
Sbjct: 874 GQRGLDGQPGYPGEKGDQGLPGLPGKPGLDGLPGIKGDRGFPGLPGDKG 922
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 21 RAISTVISGRIGLDGRDGLPGEPGLDGIPGR------NGMDGIPGKD--GLPGKDGIPGT 72
R + I G G G G+PGE G G PG+ GM G+PG+ G PGKDG+PG
Sbjct: 327 REGAPGIKGEKGDAGLPGIPGERGPTGYPGQMGPKGEPGMSGVPGQSIPGPPGKDGLPGL 386
Query: 73 NG 74
NG
Sbjct: 387 NG 388
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 23/42 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
I G GL G GLPG PG G PG G G PG G+PG G
Sbjct: 1277 IPGFPGLKGDPGLPGSPGAPGFPGTKGDAGFPGMPGVPGSKG 1318
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 25/49 (51%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G G G G PG PGL GIPG G G+PG G G G PG G
Sbjct: 970 LPGYPGPKGEPGFPGAPGLSGIPGPKGSMGLPGFPGEKGDAGYPGAPGA 1018
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
++ D G+ G G G++G PG PG G+ G G+DG PG DG+ G+DG
Sbjct: 209 EKGDPGQTGERGFPGEAGRHGKEGRPGLPGPHGMKGDRGLDGYPGLDGVQGRDG 262
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 33/61 (54%), Gaps = 14/61 (22%)
Query: 32 GLDGRDGLP---------GEPGLDGIPGRNGMD---GIPGKDGLPGK--DGIPGTNGTKT 77
GL G+ GLP GEPGL GIPGR G D G PG+ G PG G+PG G K
Sbjct: 535 GLPGQPGLPGAPGALGAKGEPGLPGIPGRPGKDGPTGFPGQKGEPGYGLPGLPGLAGAKG 594
Query: 78 D 78
+
Sbjct: 595 E 595
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 25/49 (51%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G GL G GLPG PG G+ G GM G+PG G G G PG G
Sbjct: 800 TPGFQGLKGESGLPGIPGPAGLKGEPGMPGLPGSPGTVGAPGFPGPKGN 848
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRN-----GMDGIPGKDGLPGKDG 68
G G G+ G GEPG+ G+PG++ G DG+PG +GLPGK G
Sbjct: 350 GPTGYPGQMGPKGEPGMSGVPGQSIPGPPGKDGLPGLNGLPGKKG 394
>gi|124490693|gb|ABN12763.1| collagen-like surface protein B [Streptococcus pyogenes]
Length = 456
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G DG+DGLPG+ G DG G++G+ G GKDG GKDG+PG KT DT
Sbjct: 367 GPAGKDGQDGLPGKDGKDGQDGKDGLPGKDGKDGQDGKDGLPGKPAPKTPEVPQKPDTAP 426
Query: 89 FS 90
+
Sbjct: 427 HT 428
>gi|159145794|gb|ABW90434.1| precollagen-P [Mytilus californianus]
Length = 944
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 29/47 (61%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G++G G G PG PG G PGRNG G PGK G PG G PG+ G+
Sbjct: 315 GQLGQPGSPGQPGHPGASGQPGRNGSPGNPGKPGTPGHSGTPGSRGS 361
>gi|321465374|gb|EFX76376.1| hypothetical protein DAPPUDRAFT_249123 [Daphnia pulex]
Length = 408
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 15/76 (19%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNG---------------MDGIPG 59
+R G+A ++G G +G+DG PG+PG G PG NG G PG
Sbjct: 83 ERGYPGKAGPPGLAGVPGYNGKDGFPGQPGSKGEPGYNGRPGKDGLPGPVGPPGYAGSPG 142
Query: 60 KDGLPGKDGIPGTNGT 75
KDG PG +G+PG G+
Sbjct: 143 KDGYPGANGVPGPKGS 158
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G G G++G PG G G+ G+ G DGIPGK G+PG+ G PG G
Sbjct: 46 GAPGYPGKNGGPGPQGERGLAGKPGYDGIPGKQGVPGERGYPGKAGP 92
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 34/63 (53%), Gaps = 12/63 (19%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPG---------KDGIPGTNGT 75
+G G G GL G+PG DGIPG+ G+ G PGK G PG KDG PG G+
Sbjct: 54 NGGPGPQGERGLAGKPGYDGIPGKQGVPGERGYPGKAGPPGLAGVPGYNGKDGFPGQPGS 113
Query: 76 KTD 78
K +
Sbjct: 114 KGE 116
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIP---GRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G G G PG PG +G P G G+ G PG DG+PGK G+PG G
Sbjct: 36 TGAPGYPGAIGAPGYPGKNGGPGPQGERGLAGKPGYDGIPGKQGVPGERG 85
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 12/53 (22%)
Query: 27 ISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGK---------DGLPGKD 67
I G+ G+ G G PG+ PGL G+PG NG DG PG+ +G PGKD
Sbjct: 74 IPGKQGVPGERGYPGKAGPPGLAGVPGYNGKDGFPGQPGSKGEPGYNGRPGKD 126
>gi|73950635|ref|XP_544508.2| PREDICTED: complement C1q subcomponent subunit C isoform 2 [Canis
lupus familiaris]
gi|345793701|ref|XP_003433793.1| PREDICTED: complement C1q subcomponent subunit C isoform 1 [Canis
lupus familiaris]
Length = 245
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 28/42 (66%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G+PG PGL G PG++G DG+PG G PG IPGT G K
Sbjct: 31 GCYGIPGMPGLPGAPGKDGHDGLPGPKGEPGIPAIPGTRGPK 72
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 26/48 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G DG DGLPG G GIP G G G+ G PG G PG NG
Sbjct: 41 LPGAPGKDGHDGLPGPKGEPGIPAIPGTRGPKGQKGEPGTPGYPGKNG 88
>gi|308470423|ref|XP_003097445.1| CRE-DPY-4 protein [Caenorhabditis remanei]
gi|308240153|gb|EFO84105.1| CRE-DPY-4 protein [Caenorhabditis remanei]
Length = 256
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 29/51 (56%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G+DG G PG G G PG G DG PGK G PG+DG PG G + A+
Sbjct: 194 GIDGAPGAPGPKGEPGTPGEPGKDGEPGKPGTPGQDGTPGEKGICPKYCAL 244
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+G DG PG PG G PG G PGKDG PGK G PG +GT
Sbjct: 193 NGIDGAPGAPGPKGEPG---TPGEPGKDGEPGKPGTPGQDGT 231
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
G G G G PGEPG DG PG+ G PG+DG PG+ GI
Sbjct: 200 GAPGPKGEPGTPGEPGKDGEPGK---PGTPGQDGTPGEKGI 237
>gi|444730160|gb|ELW70551.1| Collagen alpha-6(IV) chain [Tupaia chinensis]
Length = 671
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 27 ISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPG---KDGLPGKDGIPGTNGTKTD 78
I G+ GL G G PG PGL GIPG +G+ GIPG K G+PG+ GIPG G + D
Sbjct: 171 IKGKPGLPGTPGFPGSSGIPGLPGIPGPSGLKGIPGSPGKVGIPGQMGIPGKKGDRGD 228
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTKT 77
G G+ G G+PG GL GIPG G GIPG+ G+PGK G PG NG +
Sbjct: 183 FPGSSGIPGLPGIPGPSGLKGIPGSPGKVGIPGQMGIPGKKGDRGDPGPNGIPS 236
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 26/42 (61%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
LDG G PG PG G PG +G+ G+PG G G GIPG+ G
Sbjct: 168 LDGIKGKPGLPGTPGFPGSSGIPGLPGIPGPSGLKGIPGSPG 209
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 37 DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
DG+ G+PGL G PG G GIPG G+PG G+ G G+
Sbjct: 169 DGIKGKPGLPGTPGFPGSSGIPGLPGIPGPSGLKGIPGS 207
>gi|358334139|dbj|GAA52592.1| collagen type I/II/III/V/XI alpha [Clonorchis sinensis]
Length = 1294
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 36/57 (63%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
I GR+G+ G G+PG+PG DG PG G GI G +GLPG+DG PG G + A G
Sbjct: 597 IPGRMGVMGIPGVPGQPGPDGAPGPRGDRGISGINGLPGQDGQPGPQGLRGPRGAPG 653
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G GL G G PG PGLDG P G+DG G G GKDG PG G
Sbjct: 232 TGETGLPGSSGDPGRPGLDGPP---GLDGEQGPQGPEGKDGRPGPKG 275
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 25/40 (62%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
G+IG+ G G PG+PG DG PG NG DG G G PG G
Sbjct: 530 GQIGIRGAIGAPGDPGKDGQPGTNGTDGEAGVPGQPGPQG 569
>gi|116326001|ref|NP_082046.2| collagen alpha-1(XXIV) chain precursor [Mus musculus]
gi|341940379|sp|Q30D77.2|COOA1_MOUSE RecName: Full=Collagen alpha-1(XXIV) chain; Flags: Precursor
Length = 1733
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 31/48 (64%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
SG+ G+ G G PG GL G PG +GM G PGK GLPGK G+ G G+
Sbjct: 1294 SGKPGIPGVPGFPGPKGLQGYPGVDGMSGYPGKPGLPGKQGLLGVPGS 1341
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNG 74
G+ G+ G G PG PG+ G PG G+ G PG DG+ PGK G+PG G
Sbjct: 1285 QGKRGVPGPSGKPGIPGVPGFPGPKGLQGYPGVDGMSGYPGKPGLPGKQG 1334
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD------GIPGTNG 74
+G G G G PG PG +G+ G++G+ G PG GLPG+D G+PGT G
Sbjct: 1056 AGATGEPGPRGEPGAPGEEGLQGKDGLKGAPGGSGLPGEDGDKGEMGLPGTAG 1108
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G+DG G PG+PGL PG+ G+ G+PG G G G PG G K
Sbjct: 1311 LQGYPGVDGMSGYPGKPGL---PGKQGLLGVPGSPGRTGVAGSPGPQGGK 1357
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 27/48 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G GL G PG+DG+ G G G+PGK GL G G PG G
Sbjct: 1299 IPGVPGFPGPKGLQGYPGVDGMSGYPGKPGLPGKQGLLGVPGSPGRTG 1346
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 23/40 (57%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
G G G+ GLPG PG G PG G+ G PG GLPG G
Sbjct: 964 GEKGNQGKRGLPGLPGKAGSPGERGVQGKPGFQGLPGSSG 1003
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GL G GLPG E GL G+ G G G PG+ GL G +G PG+ G +
Sbjct: 584 LQGAKGLKGHPGLPGLRGEHGLPGLAGNIGSPGYPGRQGLAGPEGNPGSKGVR 636
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 12/60 (20%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGI------------PGKDGLPGKDGIPGTNGTK 76
G GL G+DGL G PG G+PG +G G PG+ GLPG +GI GT G +
Sbjct: 1072 GEEGLQGKDGLKGAPGGSGLPGEDGDKGEMGLPGTAGPVGRPGQMGLPGPEGIVGTPGQR 1131
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTKTD 78
G G G GEPG G PG G +G+ GKDGL PG G+PG +G K +
Sbjct: 1051 GPAGSAGATGEPGPRGEPGAPGEEGLQGKDGLKGAPGGSGLPGEDGDKGE 1100
Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNG---------MDGIPGKDGLPGKDGIPGTNGTKT 77
+ G+ G G G+ G+PG G+PG +G G+PG GLPG+ G+ G GT+
Sbjct: 977 LPGKAGSPGERGVQGKPGFQGLPGSSGDVGPAGEPGPRGLPGIAGLPGEMGVEGPPGTEG 1036
Query: 78 D 78
D
Sbjct: 1037 D 1037
>gi|109120201|ref|XP_001090663.1| PREDICTED: complement C1q tumor necrosis factor-related protein
9A isoform 1 [Macaca mulatta]
gi|297274113|ref|XP_002800730.1| PREDICTED: complement C1q tumor necrosis factor-related protein
9A isoform 2 [Macaca mulatta]
Length = 333
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGT 75
IG + S G G+PG PG +G+PGR+G DG+ G G PG+ G PG +GT
Sbjct: 10 IGICAGNISSQNTCRQGHPGIPGNPGHNGLPGRDGRDGVKGDKGDAGEPGRPGSPGKDGT 69
Query: 76 KTDHYAMGADTKSFSDGV 93
+ GAD K + G+
Sbjct: 70 SGEKGERGADGKVEAKGI 87
>gi|76160814|gb|ABA39881.1| alpha 1 type XXIV collagen [Mus musculus]
gi|187952151|gb|AAI39135.1| Collagen, type XXIV, alpha 1 [Mus musculus]
Length = 1733
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 31/48 (64%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
SG+ G+ G G PG GL G PG +GM G PGK GLPGK G+ G G+
Sbjct: 1294 SGKPGIPGVPGFPGPKGLQGYPGVDGMSGYPGKPGLPGKQGLLGVPGS 1341
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNG 74
G+ G+ G G PG PG+ G PG G+ G PG DG+ PGK G+PG G
Sbjct: 1285 QGKRGVPGPSGKPGIPGVPGFPGPKGLQGYPGVDGMSGYPGKPGLPGKQG 1334
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD------GIPGTNG 74
+G G G G PG PG +G+ G++G+ G PG GLPG+D G+PGT G
Sbjct: 1056 AGATGEPGPRGEPGAPGEEGLQGKDGLKGAPGGSGLPGEDGDKGEMGLPGTAG 1108
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G+DG G PG+PGL PG+ G+ G+PG G G G PG G K
Sbjct: 1311 LQGYPGVDGMSGYPGKPGL---PGKQGLLGVPGSPGRTGVAGSPGPQGGK 1357
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 27/48 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G GL G PG+DG+ G G G+PGK GL G G PG G
Sbjct: 1299 IPGVPGFPGPKGLQGYPGVDGMSGYPGKPGLPGKQGLLGVPGSPGRTG 1346
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 23/40 (57%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
G G G+ GLPG PG G PG G+ G PG GLPG G
Sbjct: 964 GEKGNQGKRGLPGLPGKAGSPGERGVQGKPGFQGLPGSSG 1003
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GL G GLPG E GL G+ G G G PG+ GL G +G PG+ G +
Sbjct: 584 LQGAKGLKGHPGLPGLRGEHGLPGLAGNIGSPGYPGRQGLAGPEGNPGSKGVR 636
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 12/60 (20%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGI------------PGKDGLPGKDGIPGTNGTK 76
G GL G+DGL G PG G+PG +G G PG+ GLPG +GI GT G +
Sbjct: 1072 GEEGLQGKDGLKGAPGGSGLPGEDGDKGEMGLPGTAGPVGRPGQMGLPGPEGIVGTPGQR 1131
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTKTD 78
G G G GEPG G PG G +G+ GKDGL PG G+PG +G K +
Sbjct: 1051 GPAGSAGATGEPGPRGEPGAPGEEGLQGKDGLKGAPGGSGLPGEDGDKGE 1100
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNG---------MDGIPGKDGLPGKDGIPGTNGTKT 77
+ G+ G G G+ G+PG G+PG +G G+PG GLPG+ G+ G GT+
Sbjct: 977 LPGKAGSPGERGVQGKPGFQGLPGSSGDVGPAGEPGPRGLPGIAGLPGEMGVEGPPGTEG 1036
Query: 78 D 78
D
Sbjct: 1037 D 1037
>gi|12848817|dbj|BAB28100.1| unnamed protein product [Mus musculus]
Length = 150
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 15 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGD 68
>gi|291399639|ref|XP_002716220.1| PREDICTED: collagen, type VI, alpha 6 [Oryctolagus cuniculus]
Length = 2273
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTKTDHYAMG 83
G GL+G++G GE G+DG+ G G +G+PG+ G G + GIPG GT DH A G
Sbjct: 1448 GNRGLNGQEGEVGESGIDGLSGEQGDNGLPGRKGEKGDEGIQGIPGRRGTSGDHGAKG 1505
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G +G G DGL GE G +G+PGR G G G G+PG+ G G +G K
Sbjct: 1456 EGEVGESGIDGLSGEQGDNGLPGRKGEKGDEGIQGIPGRRGTSGDHGAK 1504
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 21 RAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIP---GTNGTKT 77
R + IG DG G PG+ G G+ G G +G G++G+ G+ G P G GTK
Sbjct: 1380 RTCCCLFCKCIGGDGAMGEPGQAGKRGLAGFKGSEGYLGEEGVAGERGAPGPVGEQGTKG 1439
Query: 78 DHYAMG 83
H A G
Sbjct: 1440 CHGAKG 1445
>gi|390465441|ref|XP_003733409.1| PREDICTED: complement C1q subcomponent subunit C-like [Callithrix
jacchus]
Length = 244
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 28/42 (66%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G+PG PGL G PG++G DG+PG G PG IPGT G K
Sbjct: 30 GCYGIPGMPGLPGAPGKDGHDGLPGPKGEPGIPAIPGTRGPK 71
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 25/47 (53%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
+ G G DG DGLPG G GIP G G G+ G PG G PG N
Sbjct: 40 LPGAPGKDGHDGLPGPKGEPGIPAIPGTRGPKGQKGEPGTPGHPGKN 86
>gi|431916994|gb|ELK16750.1| Collagen alpha-4(VI) chain [Pteropus alecto]
Length = 2442
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 29/48 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GR G G DGLPG PG G G G DG+ G DG G GIPG++G K
Sbjct: 1579 GRKGEKGSDGLPGHPGEQGEHGSAGEDGVDGLDGEQGNHGIPGSSGEK 1626
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G DG DGL GE G GIPG +G G G GL G G PG +G
Sbjct: 1600 GSAGEDGVDGLDGEQGNHGIPGSSGEKGNRGNRGLTGSPGQPGEHG 1645
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 29 GRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+ G G DG P GE G GI G G G PG G PG G PG G K
Sbjct: 1767 GKKGTKGEDGDPGHQGEKGAKGIRGNRGNAGFPGFVGTPGDQGPPGPRGIK 1817
>gi|198416097|ref|XP_002120982.1| PREDICTED: similar to collagen, type IV, alpha 1 [Ciona
intestinalis]
Length = 1831
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 34/54 (62%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
T SGR G+ G G G G+ G PG G+ GIPG+ G PG +G+PG NGTK +
Sbjct: 93 TGKSGREGMQGPKGSRGSQGVHGYPGNPGIPGIPGQTGAPGPEGLPGCNGTKGE 146
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 11/84 (13%)
Query: 29 GRIGLDGRDG----LPGEPGLDGIPGRNGMD---GIPGKD---GLPGKDGIPGTNGTKTD 78
G GL G+ G LPG PG+DG+PG++G+D G+PGKD GLPG++G+PG G + +
Sbjct: 1159 GYPGLPGQKGAKSTLPGLPGVDGLPGKDGLDGEPGMPGKDGQVGLPGRNGLPGPKGGRGN 1218
Query: 79 HYAMGADTKSFSDGVL-PSVQRAI 101
MG +S G P+ +R
Sbjct: 1219 SGLMGFPGESGEKGNTGPAGERGF 1242
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+GR + G+ G G++G+PG PGL G G G G+ G GLPG+DG+PG NG
Sbjct: 1493 QVGRQGTPGTRGQKGEIGQEGIPGLPGLAGDRGEPGPQGLVGAQGLPGEDGLPGANG 1549
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
ST + G G G G PG PG+ G PG G G+PG +G PG+ G GT G + +
Sbjct: 1411 STGLPGLAGFAGEQGEPGFPGMKGRPGEPGAQGLPGLEGPPGEKGERGTTGLRGE 1465
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGM---DGIPGKDGLPGKDGIPGTNG 74
G IG +G GLPG G G PG G+ G+PG+DGLPG +G+PGT G
Sbjct: 1507 GEIGQEGIPGLPGLAGDRGEPGPQGLVGAQGLPGEDGLPGANGLPGTPG 1555
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
SG +G GR G PG PGL G DG+PG +G PG+DG PG G
Sbjct: 1010 SGPMGFPGRKGEPGNPGLPG------SDGLPGAEGSPGEDGAPGFRG 1050
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 30/63 (47%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
T + G GL G G GE G G PG G G PG GLPG +G PG G + G
Sbjct: 1406 TGLPGSTGLPGLAGFAGEQGEPGFPGMKGRPGEPGAQGLPGLEGPPGEKGERGTTGLRGE 1465
Query: 85 DTK 87
D +
Sbjct: 1466 DAQ 1468
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 13/66 (19%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLD------------GIPGRNGMDGIPGKDGLPG 65
+ G +T +G G G+ GLPG GL+ G+PGR G+DG+PG+ GLPG
Sbjct: 1227 ESGEKGNTGPAGERGFPGQQGLPGIGGLEGLPGVQGEKGRTGLPGRQGLDGLPGEAGLPG 1286
Query: 66 KDGIPG 71
D +PG
Sbjct: 1287 -DSVPG 1291
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G+ GLDG G+PG+ G G+PGRNG+ G G G G G PG +G K +
Sbjct: 1182 LPGKDGLDGEPGMPGKDGQVGLPGRNGLPGPKGGRGNSGLMGFPGESGEKGN 1233
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG-----KDGIPGTNGTKTDHYAMG 83
GL+G G+ GE G G+PGR G+DG+PG+ GLPG G+PG G + +G
Sbjct: 1253 GLEGLPGVQGEKGRTGLPGRQGLDGLPGEAGLPGDSVPGPVGLPGRQGLPGEEGMIG 1309
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDG------IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
T GR GL G DG G PG +G + GR+G G PG+ G PG G+PG++G
Sbjct: 977 TGSPGRTGLPGLDGSAGPPGKEGPTGPQGLQGRSGPMGFPGRKGEPGNPGLPGSDGLPGA 1036
Query: 79 HYAMGAD 85
+ G D
Sbjct: 1037 EGSPGED 1043
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD-----GIPGTNGTKTDHYA 81
+ G G G G G+PG G GR G DG+PG DGLPG+ G PG GT+ +
Sbjct: 808 VRGEPGAVGIPGETGQPGKKGSAGRPGFDGMPGLDGLPGEKGKDAFGYPGPRGTQGSRGS 867
Query: 82 MGA 84
GA
Sbjct: 868 PGA 870
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G +GL GR GLPGE G+ G+PG G G+PG G G G G +G + GA
Sbjct: 1289 VPGPVGLPGRQGLPGEEGMIGLPGLPGPRGLPGLKGEMGFLGPEGPSGRQGQPGPRGATV 1348
Query: 87 K 87
K
Sbjct: 1349 K 1349
>gi|384946820|gb|AFI37015.1| complement C1q tumor necrosis factor-related protein 9A precursor
[Macaca mulatta]
Length = 333
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGT 75
IG + S G G+PG PG +G+PGR+G DG+ G G PG+ G PG +GT
Sbjct: 10 IGICAGNISSQNTCRQGHPGIPGNPGHNGLPGRDGRDGVKGDKGDAGEPGRPGSPGKDGT 69
Query: 76 KTDHYAMGADTKSFSDGV 93
+ GAD K + G+
Sbjct: 70 SGEKGERGADGKVEAKGI 87
>gi|156055|gb|AAA27850.1| collagen-like antigen, partial [Brugia malayi]
Length = 452
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 38/70 (54%)
Query: 7 MLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK 66
+L+ R G A + G++GL G+ G PG GL GIPG G G PG G PGK
Sbjct: 323 LLRPGPPGYRGQKGEAGFPGLPGQVGLPGKSGPPGLTGLPGIPGPKGEPGFPGLTGKPGK 382
Query: 67 DGIPGTNGTK 76
DG+PG G K
Sbjct: 383 DGLPGFPGFK 392
>gi|384110822|gb|AFH66978.1| ficolin, partial [Enhydris polylepis]
Length = 165
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 21 RAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPGTNGTKT 77
R IS +I L G+ G+PG PG+ GI G G++G PG GL G+ DGIPG G K
Sbjct: 37 RTEHQCISDKIILQGQPGIPGIPGVPGINGSEGLNGDPGPQGLSGEIGFDGIPGVAGPKG 96
Query: 78 D 78
D
Sbjct: 97 D 97
>gi|321444911|gb|EFX60538.1| hypothetical protein DAPPUDRAFT_123781 [Daphnia pulex]
Length = 107
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G IG G DGLPG DGIPG DG+PG DG+PG DG+PGT+G A G D
Sbjct: 27 AGPIGAPGPDGLPG---TDGIPG---TDGVPGTDGVPGTDGVPGTDGLVGPDGAPGPDGM 80
Query: 88 SFSDG 92
DG
Sbjct: 81 PGPDG 85
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGE---PGLDGIPGRNGM---DGIPGKDGLPGKDGIPGT 72
IG + G G+ G DG+PG PG DG+PG +G+ DG PG DG+PG DG PG
Sbjct: 30 IGAPGPDGLPGTDGIPGTDGVPGTDGVPGTDGVPGTDGLVGPDGAPGPDGMPGPDGQPGP 89
Query: 73 NGTK 76
+GT
Sbjct: 90 DGTP 93
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
G PG DG+PG DGIPG DG+PG DG+PGT+G +G D DG+
Sbjct: 31 GAPGPDGLPG---TDGIPGTDGVPGTDGVPGTDGVPGTDGLVGPDGAPGPDGM 80
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%)
Query: 47 GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGVL 94
G PG G G PG DGLPG DGIPGT+G G D +DG++
Sbjct: 22 GTPGPAGPIGAPGPDGLPGTDGIPGTDGVPGTDGVPGTDGVPGTDGLV 69
>gi|208609645|dbj|BAG72200.1| collagen type I alpha 1 [Carassius auratus]
Length = 1448
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 32/60 (53%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
T G +G +G G PGE G G PG G G PG DGLPG G PG NG K D A G
Sbjct: 768 ETGAPGLVGPNGARGPPGERGETGAPGPAGFAGPPGADGLPGAKGEPGDNGAKGDAGAPG 827
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTD 78
G+ G DG G PG PG G PG G G PG GLP G G G +G+K D
Sbjct: 212 GKNGEDGESGKPGRPGERGPPGAQGARGFPGTPGLPGIKGHRGFSGLDGSKGD 264
>gi|423278782|ref|ZP_17257696.1| hypothetical protein HMPREF1203_01913 [Bacteroides fragilis HMW
610]
gi|404585774|gb|EKA90378.1| hypothetical protein HMPREF1203_01913 [Bacteroides fragilis HMW
610]
Length = 719
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 31/50 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G DG+DG G G DG+ G NG DG G DG GKDG GT+G+K
Sbjct: 129 VDGADGTDGKDGENGTDGKDGVDGTNGSDGKDGVDGTDGKDGANGTDGSK 178
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G DG+DG+ G G DG+ G +G DG G++G GKDG+ GTNG+
Sbjct: 113 GTDGKDGVDGTDGKDGVDGADGTDGKDGENGTDGKDGVDGTNGS 156
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
T+ +G+ G G DG G+ G+DG G++G+DG GKDG+ G DG G +G G
Sbjct: 91 TIRNGKKGNTGPDGDAGKDGIDGTDGKDGVDGTDGKDGVDGADGTDGKDGENGTDGKDGV 150
Query: 85 DTKSFSDG 92
D + SDG
Sbjct: 151 DGTNGSDG 158
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 29/54 (53%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G DG+DG+ G G DG G NG DG G DG G DG G +GT A G D
Sbjct: 122 GTDGKDGVDGADGTDGKDGENGTDGKDGVDGTNGSDGKDGVDGTDGKDGANGTD 175
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 6/52 (11%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL------PGKDGIPGTNG 74
G+ G+DG DG G G DG G++G +G GKDG+ GKDG+ GT+G
Sbjct: 116 GKDGVDGTDGKDGVDGADGTDGKDGENGTDGKDGVDGTNGSDGKDGVDGTDG 167
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 26/46 (56%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
+G G DG DG G G DG+ G +G DG G DG G+ G PG N
Sbjct: 142 NGTDGKDGVDGTNGSDGKDGVDGTDGKDGANGTDGSKGEQGDPGQN 187
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 31/56 (55%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I + S I+ R G G G G+ G DGI G +G DG+ G DG G DG GT+G
Sbjct: 82 ISFSRSAPITIRNGKKGNTGPDGDAGKDGIDGTDGKDGVDGTDGKDGVDGADGTDG 137
>gi|432857241|ref|XP_004068598.1| PREDICTED: collagen alpha-1(VII) chain-like [Oryzias latipes]
Length = 3179
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+SG++G G+ PG PG DG+PG++G+ G+PGK G+ G G+PG G + D
Sbjct: 2259 LSGQVGEAGK---PGVPGRDGVPGKDGLPGLPGKQGISGSVGLPGLKGEQGDS 2308
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GR S +G G G DG PG PG G+PG+ G G G +G PG+ G+PG +G +
Sbjct: 1630 GRPGSKGDAGEPGERGEDGRPGNPGKPGVPGKEGEKGDKGDEGTPGESGLPGKSGER 1686
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG---KDGIPGTNGT 75
GL GR G PG PG+ G PGR G DG G G+PG +DG PG GT
Sbjct: 1359 GLPGRKGEPGLPGIPGTPGRPGNDGAKGSSGIPGTPGQDGRPGIPGT 1405
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G PGL G G G G+PG+DG+PGKDG+PG G +
Sbjct: 2255 GPPGLSGQVGEAGKPGVPGRDGVPGKDGLPGLPGKQ 2290
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 26/43 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G GL G G PG PG DG G +G+ G PG+DG PG G PG
Sbjct: 1365 GEPGLPGIPGTPGRPGNDGAKGSSGIPGTPGQDGRPGIPGTPG 1407
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGM-DGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
I G GL GR G PG G+ G PG G+PG+ G PG GIPGT G + A G+
Sbjct: 1329 IDGNPGLPGRPGAPGNIGVPGEPGSPATGGGLPGRKGEPGLPGIPGTPGRPGNDGAKGSS 1388
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMD---GIPGKDGLPGKDGIPG 71
+G+ G+ GRDG+PG+ GL G+PG+ G+ G+PG G G G PG
Sbjct: 2266 AGKPGVPGRDGVPGKDGLPGLPGKQGISGSVGLPGLKGEQGDSGPPG 2312
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIP-----GTNGTKTDHYAMG 83
G G DG +G GEPG DG+PGR G G G+ G PG+ IP GT G K + G
Sbjct: 1270 GERGRDGAEGRKGEPGRDGLPGREGPRGPEGRPGSPGQS-IPFEPSLGTKGEKGERGFPG 1328
Query: 84 AD 85
D
Sbjct: 1329 ID 1330
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK------DGIPGTNGTKTDH 79
G G+ GR GLPG G G G G+ GIPGK+G+ G DG+PG GT+ +
Sbjct: 2707 GDSGIHGRPGLPGRKGEQGDIGPPGVTGIPGKEGIVGPKGDRGFDGVPGPKGTQGEK 2763
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG--IPGTNGT 75
+G A + GR G+ G+DGLPG PG GI G G+ G+ G+ G G G + G G
Sbjct: 2262 QVGEAGKPGVPGRDGVPGKDGLPGLPGKQGISGSVGLPGLKGEQGDSGPPGKAVAGPPGP 2321
Query: 76 KTDH 79
K D
Sbjct: 2322 KGDR 2325
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IG S G +G G+ G GEPG G R G G PG+ G PG+DG PGT G
Sbjct: 2144 IGSQGSKGDQGFVGPRGQKGDRGEPGEKG---REGSQGTPGEPGTPGQDGKPGTPG 2196
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G G G PG+DG PG G G PG G+PG+ G P T G
Sbjct: 1315 LGTKGEKGERGFPGIDGNPGLPGRPGAPGNIGVPGEPGSPATGG 1358
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 26/42 (61%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G GL G+ G G PG G DG+PGKDGLPG G G +G+
Sbjct: 2254 QGPPGLSGQVGEAGKPGVPGRDGVPGKDGLPGLPGKQGISGS 2295
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
ISGR G G G PGE G DG PG PGK G+PGK+G G G
Sbjct: 1628 ISGRPGSKGDAGEPGERGEDGRPGN------PGKPGVPGKEGEKGDKG 1669
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 26/51 (50%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GR G G G PG PG DG PG G GI G G G G+PG G K +
Sbjct: 2172 GREGSQGTPGEPGTPGQDGKPGTPGEPGIRGPTGPMGPTGLPGPIGVKGNQ 2222
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 25/43 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G G DG+ G PGEPG+ G G G G+PG G+ G G PG
Sbjct: 2184 GTPGQDGKPGTPGEPGIRGPTGPMGPTGLPGPIGVKGNQGEPG 2226
>gi|383858152|ref|XP_003704566.1| PREDICTED: collagen alpha-2(IV) chain-like [Megachile rotundata]
Length = 1835
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DR + G + G G+DGR GLPGEPGL +G DG+PG+ G PG DG G G
Sbjct: 1048 DRGEPGFMGTIGAPGFPGVDGRPGLPGEPGLS----TDGFDGLPGEKGEPGYDGFNGIPG 1103
Query: 75 TKTDHYAMGADTKSFSDGVLPSVQRAIAAGL 105
K + MG D + G RA A G+
Sbjct: 1104 PKGEIGDMGPDGLKGARGDWGFKGRAGAPGI 1134
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GRA + I GR G+ G G G PGLDG G+ G+DG PG+ G P G+PG +G +
Sbjct: 1127 GRAGAPGIHGRYGIKGAQGPMGPPGLDGPKGKRGLDGDPGQMGTP---GMPGDSGPRGAP 1183
Query: 80 YAMGADTKSFSDGV--LPSVQRA 100
MG G LPS A
Sbjct: 1184 GLMGTPGPKGEVGEPGLPSFAEA 1206
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
+SG G G+ G+ GEPG DG+PGR G G+ G GLPG DG
Sbjct: 1456 LSGLPGFPGQQGMMGEPGEDGLPGRVGEPGMMGPPGLPGLDG 1497
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 26/42 (61%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G PGE G G+PGR G GIPG DG PG DG+ G G
Sbjct: 898 VQGYRGFPGEAGQPGMPGRMGEIGIPGSDGPPGFDGMKGLKG 939
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G GLDGR G GE PG G+PG+ G G G+ GLPG G PG G K D
Sbjct: 1381 GFPGLDGRTGAKGERGDAGLPGFPGLPGQKGERGDLGEPGLPGMAGSPGPKGPKGDQ 1437
Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 36 RDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
R G+PG+ GL G PG+ GM G PG+DGLPG+ G PG G
Sbjct: 1447 RKGIPGDIGLSGLPGFPGQQGMMGEPGEDGLPGRVGEPGMMG 1488
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G +G +G PG PG G+PG G G GK G PG G+ G NG
Sbjct: 561 KGESGDNGLNGYPGAPGFPGLPGPRGFKGALGKPGAPGPRGLQGDNG 607
>gi|326926664|ref|XP_003209518.1| PREDICTED: gliomedin-like [Meleagris gallopavo]
Length = 442
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 29/58 (50%), Gaps = 15/58 (25%)
Query: 34 DGRDGLPGEPGLDGIPGRNGM---------------DGIPGKDGLPGKDGIPGTNGTK 76
+G DG PG PG G PG NG G PG+ GLPGKDG+PG G +
Sbjct: 57 NGSDGAPGVPGQKGEPGLNGKRGKMGVPGPKGDQGEKGEPGEIGLPGKDGMPGVKGAR 114
>gi|388453100|ref|NP_001253737.1| complement C1q subcomponent subunit C precursor [Macaca mulatta]
gi|402853309|ref|XP_003891339.1| PREDICTED: complement C1q subcomponent subunit C isoform 1 [Papio
anubis]
gi|402853311|ref|XP_003891340.1| PREDICTED: complement C1q subcomponent subunit C isoform 2 [Papio
anubis]
gi|355557650|gb|EHH14430.1| hypothetical protein EGK_00353 [Macaca mulatta]
gi|355745008|gb|EHH49633.1| hypothetical protein EGM_00326 [Macaca fascicularis]
gi|380790047|gb|AFE66899.1| complement C1q subcomponent subunit C precursor [Macaca mulatta]
gi|383411623|gb|AFH29025.1| complement C1q subcomponent subunit C precursor [Macaca mulatta]
Length = 245
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 28/42 (66%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G+PG PGL G PG++G DG+PG G PG IPGT G K
Sbjct: 31 GCYGIPGMPGLPGAPGKDGHDGLPGPKGEPGIPAIPGTRGPK 72
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 25/47 (53%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
+ G G DG DGLPG G GIP G G G+ G PG G PG N
Sbjct: 41 LPGAPGKDGHDGLPGPKGEPGIPAIPGTRGPKGQKGEPGTPGHPGKN 87
>gi|403287412|ref|XP_003934941.1| PREDICTED: complement C1q subcomponent subunit C isoform 1
[Saimiri boliviensis boliviensis]
gi|403287414|ref|XP_003934942.1| PREDICTED: complement C1q subcomponent subunit C isoform 2
[Saimiri boliviensis boliviensis]
Length = 243
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 28/42 (66%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G+PG PGL G PG++G DG+PG G PG IPGT G K
Sbjct: 29 GCYGIPGMPGLPGAPGKDGHDGLPGPKGEPGIPAIPGTRGPK 70
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 25/47 (53%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
+ G G DG DGLPG G GIP G G G+ G PG G PG N
Sbjct: 39 LPGAPGKDGHDGLPGPKGEPGIPAIPGTRGPKGQKGEPGTPGHPGKN 85
>gi|384945314|gb|AFI36262.1| collagen alpha-1(III) chain preproprotein [Macaca mulatta]
Length = 1457
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 37/72 (51%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A + G G DG+DG PGEPG +G+PG G G PG G G +GIPG
Sbjct: 442 EPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 501
Query: 72 TNGTKTDHYAMG 83
G A G
Sbjct: 502 EKGPAGPRGAAG 513
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G GIPG G+ G G G NG K + A G
Sbjct: 227 AGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPG 282
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 28 SGRIGLDGRDGLPGEPGLDG---IPG------------RNGMDGIPGKDGLPGKDGIPGT 72
SGR G G GLPG PG+ G IPG RNG G G GL G++G+PG
Sbjct: 233 SGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGE 292
Query: 73 NGT 75
NG
Sbjct: 293 NGA 295
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
GR G G G PG G +G+PG NG G G G P G+ G+PG G + + A G
Sbjct: 268 FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
Query: 84 AD 85
+D
Sbjct: 328 SD 329
>gi|224054051|ref|XP_002190865.1| PREDICTED: collagen alpha-1(VI) chain [Taeniopygia guttata]
Length = 1023
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 31/57 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G G G GEPG DG PGR G+ G PG+ G PG G PG G D A+G D
Sbjct: 364 GDAGAFGPKGAKGEPGNDGKPGRQGIPGNPGEKGAPGNQGEPGPAGETGDEGALGED 420
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 28 SGRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G GLPG+PGL DG PG NG G G G PG G PG NGTK
Sbjct: 489 EGPKGLPGAPGLPGDPGLMGERGEDGPPG-NGTTGFTGAPGQPGDRGNPGINGTK 542
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 25/50 (50%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G DG G PG G G G G G PG DG PG+ GIPG G K
Sbjct: 347 CKGSPGFDGAQGPPGPKGDAGAFGPKGAKGEPGNDGKPGRQGIPGNPGEK 396
>gi|308491797|ref|XP_003108089.1| CRE-COL-132 protein [Caenorhabditis remanei]
gi|308248937|gb|EFO92889.1| CRE-COL-132 protein [Caenorhabditis remanei]
Length = 315
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 30 RIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD---HYAMGADT 86
IG+ G G PG G++G+PG++G GIPG +G G G PG N D ++ D
Sbjct: 197 EIGMPGAPGAPGLAGIEGLPGKDGEPGIPGPEGEEGPTGAPGVNIVIQDGITKISLFQDQ 256
Query: 87 KSFSDGVLPSVQRAIAAGLVIYRFH 111
K D +L QR + A V F
Sbjct: 257 KDHQD-LLDQTQRTVVAPFVRLVFF 280
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 30 RIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G DG G+ GEPG G PG NG G+ DG PG NGT+
Sbjct: 159 EVGKDGAPGVVGEPGDAGEPGENGEQGV---------DGTPGANGTR 196
>gi|13235592|emb|CAC33779.1| SclB protein [Streptococcus pyogenes]
Length = 471
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI---PGTNGTKTDHYAMGADT 86
L G+DG G+ G DG+PG++G DG GKDGLPGKDG PG KT DT
Sbjct: 328 LPGKDGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKPAPKTPEVPQKPDT 384
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 37/71 (52%), Gaps = 24/71 (33%)
Query: 28 SGRIGLDGRDGLPGEPGLDG------------------------IPGRNGMDGIPGKDGL 63
+G+ G DG+DGLPG+ G DG +PG++G DG GKDGL
Sbjct: 284 AGKDGQDGKDGLPGKDGKDGQDGKDGLPGKDGKDGKDGQDGKDGLPGKDGKDGQNGKDGL 343
Query: 64 PGKDGIPGTNG 74
PGKDG G NG
Sbjct: 344 PGKDGKDGQNG 354
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 4 VQGMLQVLEVHDR-RDIGRA-ISTVISGRIGLDGRDGLPGEPGLDGIP---GRNGMDGIP 58
V+ +L+ LE DR D R + + ++ DG+DG GEPG G P G G G P
Sbjct: 94 VKKILKYLEERDRLEDQWREKLFEGMQNKL-FDGQDGAKGEPGAKGEPGPKGEPGAKGEP 152
Query: 59 GKDGLPGKDGIPGTNG 74
G G PG G PG G
Sbjct: 153 GAKGEPGAKGEPGAKG 168
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK 60
+G+ GL G+DG G+ G DG+PG++G DG PGK
Sbjct: 338 NGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGK 370
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP 64
E D+ + G A G +G G+DG + G DG+PG++G DG GKDGLP
Sbjct: 262 ETGDKGEQGPAGKDGDRGPVGPAGKDG---QDGKDGLPGKDGKDGQDGKDGLP 311
>gi|410959457|ref|XP_003986325.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(XXI) chain [Felis
catus]
Length = 969
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + + G+ GL G G PG+PG G PG++G DG PG G+ G G+PG+ G
Sbjct: 436 DVGSTPAPCVCPLGKPGLQGPKGEPGQPGNPGYPGQSGQDGKPGYQGIAGSPGVPGSPGI 495
Query: 76 K 76
+
Sbjct: 496 Q 496
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 5 QGML-QVLEVHDRRDIGRAISTVISGRIGLDGRDGLPG---------EPGLDGIPGRNGM 54
QG++ Q E+ + +G+ + I G +G DG G PG EPGL G+PG +G+
Sbjct: 613 QGLMGQKGEIGPQGPLGKKGAPGIPGMMGRDGSPGQPGTPGSKGNKGEPGLQGMPGASGL 672
Query: 55 DGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G PG G PG+ G G G + YA+
Sbjct: 673 KGEPGAVGPPGEPGYLGLPGVQGKRYAL 700
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
SG+ G G G+ G PG+ G PG G+ G+PG G PG+DG G G
Sbjct: 472 SGQDGKPGYQGIAGSPGVPGSPGIQGVQGLPGYKGEPGRDGEKGDRG 518
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G +G G G+PG G DG PG+ G G G G PG G+PG +G K + A+G
Sbjct: 625 QGPLGKKGAPGIPGMMGRDGSPGQPGTPGSKGNKGEPGLQGMPGASGLKGEPGAVG 680
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G+ G G+PG PG+ G+ G G G PG+DG G G+PG G
Sbjct: 479 GYQGIAGSPGVPGSPGIQGVQGLPGYKGEPGRDGEKGDRGLPGFPG 524
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G G PG G+ G+PG++G G G
Sbjct: 858 GLPGRDGVPGLVGAPGRPGARGLKGLPGRNGAKGNQGF 895
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 32/69 (46%), Gaps = 21/69 (30%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGM------------------DGIP---GKDGLPGKD 67
G G G+DG GEPGL G PG G+ GIP G+DG PG+
Sbjct: 590 GPPGAPGQDGSRGEPGLPGFPGNQGLMGQKGEIGPQGPLGKKGAPGIPGMMGRDGSPGQP 649
Query: 68 GIPGTNGTK 76
G PG+ G K
Sbjct: 650 GTPGSKGNK 658
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 25/48 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G G PG+ G DG PG G+ G PG G PG G+ G G K
Sbjct: 458 GEPGQPGNPGYPGQSGQDGKPGYQGIAGSPGVPGSPGIQGVQGLPGYK 505
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G A S + G G+ G GLP GEPG DG G G+ G PG G+PG G G G K
Sbjct: 482 GIAGSPGVPGSPGIQGVQGLPGYKGEPGRDGEKGDRGLPGFPGLHGMPGLKGEMGPKGDK 541
>gi|397518642|ref|XP_003829492.1| PREDICTED: collagen alpha-6(VI) chain [Pan paniscus]
Length = 2263
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G +G +G DGL GE G +G+PGR G G G G PGK G PG G K
Sbjct: 1457 EGEVGENGIDGLNGEQGDNGLPGRKGEKGDEGSQGSPGKRGTPGDRGAK 1505
>gi|345778919|ref|XP_532180.3| PREDICTED: collagen alpha-1(XXI) chain [Canis lupus familiaris]
Length = 957
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + + G+ GL G G PG+PG G PG++G DG PG G+ G G+PG+ G
Sbjct: 436 DVGSTPAPCVCPPGKPGLQGPKGEPGQPGNPGYPGQSGQDGKPGYQGIAGSPGVPGSPGI 495
Query: 76 K 76
+
Sbjct: 496 Q 496
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 5 QGML-QVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL 63
QG++ Q E+ +G+ + I G +G DG G PG PG G G G+ G+PG GL
Sbjct: 613 QGLMGQKGEIGPPGPLGKKGAPGIPGLMGRDGSPGQPGTPGSKGNKGEPGLQGMPGASGL 672
Query: 64 ------------PGKDGIPGTNGTKTDHYAMG 83
PG G+PG G K D + G
Sbjct: 673 KGEQGAVGPPGEPGYLGLPGIQGKKGDKGSQG 704
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
SG+ G G G+ G PG+ G PG G+ G+PG G PG+DG G G
Sbjct: 472 SGQDGKPGYQGIAGSPGVPGSPGIQGVQGLPGYKGEPGRDGEKGDRG 518
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G+ G G+PG PG+ G+ G G G PG+DG G G+PG G
Sbjct: 479 GYQGIAGSPGVPGSPGIQGVQGLPGYKGEPGRDGEKGDRGLPGFPG 524
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G G PG G+ G+PG++G G G
Sbjct: 846 GLPGRDGVPGLVGAPGRPGARGLKGLPGRNGAKGSQGF 883
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 25/49 (51%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G G PG+ G DG PG G+ G PG G PG G+ G G K
Sbjct: 457 KGEPGQPGNPGYPGQSGQDGKPGYQGIAGSPGVPGSPGIQGVQGLPGYK 505
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G A S + G G+ G GLP GEPG DG G G+ G PG G+PG G G G K
Sbjct: 482 GIAGSPGVPGSPGIQGVQGLPGYKGEPGRDGEKGDRGLPGFPGLHGIPGLKGEMGPKGDK 541
>gi|344268758|ref|XP_003406223.1| PREDICTED: collagen alpha-1(III) chain [Loxodonta africana]
Length = 1461
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 34/59 (57%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
R + G A S I G G DG+DG PGEPG +G PG G G PG G G +G+PG G
Sbjct: 442 RGERGEAGSPGIPGPKGEDGKDGSPGEPGANGSPGTAGERGAPGFRGPAGANGLPGEKG 500
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 35/57 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
SG+ G G G G PGL G G G DG PG DGLPG+DG PGT G + ++ + GA
Sbjct: 982 SGQNGERGPPGAQGLPGLAGAAGEPGRDGNPGSDGLPGRDGSPGTKGDRGENGSPGA 1038
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+G+ G G++G G PG G+PG G G PG+DG PG DG+PG +G+
Sbjct: 976 NGKPGPSGQNGERGPPGAQGLPGLAGAAGEPGRDGNPGSDGLPGRDGS 1023
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLD---GIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR ++G GL G G+PG PG+ G GRNG G G GL G++G+PG NG+
Sbjct: 233 GRTGERGLTGPPGLKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGS 291
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
GR G G G PG G +G+PG NG G G G P G+ G+PG G + + A G
Sbjct: 264 FDGRNGEKGETGAPGLKGENGLPGENGSPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 323
Query: 84 AD 85
+D
Sbjct: 324 SD 325
>gi|332817903|ref|XP_003310057.1| PREDICTED: collagen alpha-6(VI) chain [Pan troglodytes]
Length = 2263
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G +G +G DGL GE G +G+PGR G G G G PGK G PG G K
Sbjct: 1457 EGEVGENGIDGLNGEQGDNGLPGRKGEKGDEGSQGSPGKRGTPGDRGAK 1505
>gi|156616290|ref|NP_001096078.1| collagen alpha-6(VI) chain precursor [Homo sapiens]
gi|189082902|sp|A6NMZ7.2|CO6A6_HUMAN RecName: Full=Collagen alpha-6(VI) chain; Flags: Precursor
Length = 2263
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G +G +G DGL GE G +G+PGR G G G G PGK G PG G K
Sbjct: 1457 EGEVGENGIDGLNGEQGDNGLPGRKGEKGDEGSQGSPGKRGTPGDRGAK 1505
>gi|410301546|gb|JAA29373.1| collagen, type VI, alpha 6 [Pan troglodytes]
Length = 2263
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G +G +G DGL GE G +G+PGR G G G G PGK G PG G K
Sbjct: 1457 EGEVGENGIDGLNGEQGDNGLPGRKGEKGDEGSQGSPGKRGTPGDRGAK 1505
>gi|109000974|ref|XP_001100182.1| PREDICTED: collagen alpha-1(XVI) chain [Macaca mulatta]
Length = 1604
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1469 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGD 1522
>gi|402853716|ref|XP_003891536.1| PREDICTED: collagen alpha-1(XVI) chain [Papio anubis]
Length = 1604
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1469 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGD 1522
>gi|355557767|gb|EHH14547.1| hypothetical protein EGK_00491 [Macaca mulatta]
Length = 1604
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1469 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGD 1522
>gi|301767086|ref|XP_002918971.1| PREDICTED: collagen alpha-1(XXI) chain-like [Ailuropoda
melanoleuca]
Length = 957
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + + G+ GL G G PG+PG G PG++G DG PG G+ G G+PG+ G
Sbjct: 436 DVGSTPAPCVCPPGKPGLQGPKGEPGQPGNPGYPGQSGQDGKPGYQGITGSPGVPGSPGI 495
Query: 76 K 76
+
Sbjct: 496 Q 496
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G+ G G+PG PG+ G+PG G G PG+DG G G+PG G
Sbjct: 479 GYQGITGSPGVPGSPGIQGVPGLPGYKGEPGRDGEKGDRGLPGFPG 524
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 26/49 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G G PG+ G DG PG G+ G PG G PG G+PG G K
Sbjct: 457 KGEPGQPGNPGYPGQSGQDGKPGYQGITGSPGVPGSPGIQGVPGLPGYK 505
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 28/50 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G+DG PG G+ G PG G GI G GLPG G PG +G K D
Sbjct: 467 GYPGQSGQDGKPGYQGITGSPGVPGSPGIQGVPGLPGYKGEPGRDGEKGD 516
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 5 QGML-QVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL 63
QG++ Q E+ +G+ + I G +G DG G PG PG G G G+ G+PG GL
Sbjct: 613 QGLMGQKGEIGPPGPLGKKGAPGIPGLMGRDGSPGQPGTPGSKGNKGEPGLQGMPGASGL 672
Query: 64 ------------PGKDGIPGTNGTKTDHYAMG 83
PG G+PG G K D + G
Sbjct: 673 KGEQGAVGPPGEPGYLGLPGIQGKKGDKGSQG 704
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
SG+ G G G+ G PG+ G PG G+ G+PG G PG+DG G G
Sbjct: 472 SGQDGKPGYQGITGSPGVPGSPGIQGVPGLPGYKGEPGRDGEKGDRG 518
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G G PG G+ G+PG++G G G
Sbjct: 846 GLPGRDGVPGLVGAPGHPGARGLKGLPGRNGAKGSQGF 883
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPG---------RNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
SG G G G PGEPG G+PG G GI G+ G G+ GIPG G +
Sbjct: 670 SGLKGEQGAVGPPGEPGYLGLPGIQGKKGDKGSQGERGIQGQKGEDGRQGIPGQQGIQGH 729
Query: 79 HYAMGADTKSFSDGV 93
H A G + GV
Sbjct: 730 HGAKGERGEKGEPGV 744
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 21/70 (30%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGM------------------DGIP---GKDGLPGK 66
+G G G+DG GEPG+ G PG G+ GIP G+DG PG+
Sbjct: 589 AGPPGAPGQDGSRGEPGIPGFPGSQGLMGQKGEIGPPGPLGKKGAPGIPGLMGRDGSPGQ 648
Query: 67 DGIPGTNGTK 76
G PG+ G K
Sbjct: 649 PGTPGSKGNK 658
>gi|115347|sp|P27393.1|CO4A2_ASCSU RecName: Full=Collagen alpha-2(IV) chain; Flags: Precursor
gi|159649|gb|AAA18014.1| putative [Ascaris suum]
Length = 1763
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 33/55 (60%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G A + I G GL G G GEPGL GIPG+ G DGIPGK G G G+PG G
Sbjct: 1303 GYAGAAGIKGEPGLPGIPGAKGEPGLSGIPGKRGNDGIPGKPGPAGLPGLPGMKG 1357
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ + G + + G GL G G+ G PGL G PG G+ GIPG+ G+ GK G+PG G
Sbjct: 741 KGEAGFPGAPGLQGPAGLPGLPGMKGNPGLPGAPGLAGLPGIPGEKGIAGKPGLPGLTGA 800
Query: 76 KTD 78
K +
Sbjct: 801 KGE 803
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK------DGLPGKDGIPGTNGTKTD 78
+ G GL G GLPG+ GL G+PG+ G G PG+ GLPGK G PG G K D
Sbjct: 1110 LKGEAGLPGAPGLPGQDGLPGLPGQKGESGFPGQPGLVGPPGLPGKMGAPGIRGEKGD 1167
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNGTKTDH 79
+ G G GR G PG GLDG PG G+ G +PG GLPG+DG+PG G K +
Sbjct: 1083 LPGLPGKPGRPGAPGPKGLDGAPGFPGLKGEAGLPGAPGLPGQDGLPGLPGQKGES 1138
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 31/52 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G GL G G GE GL G+PG GM G PG G PG+DG+PG G K D
Sbjct: 965 AGLPGLPGAPGQKGEQGLAGLPGIPGMKGAPGIPGAPGQDGLPGLPGVKGDR 1016
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 34/65 (52%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
SG G G GLPG PGL G PG G G G+ G PG+ GIPG G K D GA +
Sbjct: 1359 SGLPGPQGPAGLPGLPGLKGEPGLPGFPGQKGETGFPGQPGIPGLPGMKGDSGYPGAPGR 1418
Query: 88 SFSDG 92
+ G
Sbjct: 1419 DGAPG 1423
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD-----------GLPGKDGIPGTNGTK 76
+G G GRDGLPG PG+ G G G+ G PGK GLPGKDG+PG G K
Sbjct: 1237 AGLPGAPGRDGLPGLPGMKGEAGLPGLPGQPGKSITGPKGNAGLPGLPGKDGLPGLPGLK 1296
Query: 77 TDH----YAMGADTK 87
+ YA A K
Sbjct: 1297 GEPGKPGYAGAAGIK 1311
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTD 78
L G+DG+PG PGL G+ G+ G+ G+PG+ GLPG G PG G K +
Sbjct: 835 LKGKDGIPGAPGLPGLEGQRGLPGVPGQKGEIGLPGLAGAPGFPGAKGE 883
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 29/47 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G GL G+DGLPG PGL G PG+ G G G G PG GIPG G
Sbjct: 1278 AGLPGLPGKDGLPGLPGLKGEPGKPGYAGAAGIKGEPGLPGIPGAKG 1324
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 30/51 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G G G G PG PGL+G PG GM G G G PG+DG+PG G K +
Sbjct: 1207 AGAPGFPGLKGEPGLPGLEGQPGPRGMKGEAGLPGAPGRDGLPGLPGMKGE 1257
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 32/56 (57%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ + I G G G GLPGE GLDG+PG+ G G PG GLPG G G+ G
Sbjct: 1154 GKMGAPGIRGEKGDAGLPGLPGERGLDGLPGQKGEAGFPGAPGLPGPVGPKGSAGA 1209
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD------GLPGKDGIPGTNGTKTDHYAMGA 84
G G GLPG PG DG+PG G+ G PGK G+ G+ G+PG G K + G
Sbjct: 1272 TGPKGNAGLPGLPGKDGLPGLPGLKGEPGKPGYAGAAGIKGEPGLPGIPGAKGEPGLSGI 1331
Query: 85 DTKSFSDGV 93
K +DG+
Sbjct: 1332 PGKRGNDGI 1340
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 35/61 (57%), Gaps = 9/61 (14%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIP---GRNGMDGIPGK---DGLPGKD---GIPGTNGTKTD 78
G+ G G G+ GEPGL GIP G G+ GIPGK DG+PGK G+PG G K +
Sbjct: 1299 PGKPGYAGAAGIKGEPGLPGIPGAKGEPGLSGIPGKRGNDGIPGKPGPAGLPGLPGMKGE 1358
Query: 79 H 79
Sbjct: 1359 S 1359
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDHYAMG 83
+ G++G G G G+ GL G+PG G+DG+PG+ G PG G+PG G K A G
Sbjct: 1152 LPGKMGAPGIRGEKGDAGLPGLPGERGLDGLPGQKGEAGFPGAPGLPGPVGPKGSAGAPG 1211
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I G+ G G GLPG G G+PG G G+PG GL G+ G+PG G K +
Sbjct: 1340 IPGKPGPAGLPGLPGMKGESGLPGPQGPAGLPGLPGLKGEPGLPGFPGQKGE 1391
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G GL G G+PGE G+ G PG G+ G G+ G PG+ G+PG G
Sbjct: 770 LPGAPGLAGLPGIPGEKGIAGKPGLPGLTGAKGEAGYPGQPGLPGPKG 817
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 19 IGRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G S G GL G GLPG +PG G+ G G+ G PG+DGLPG G+ G G
Sbjct: 1201 VGPKGSAGAPGFPGLKGEPGLPGLEGQPGPRGMKGEAGLPGAPGRDGLPGLPGMKGEAG 1259
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
+ G G+ G G+PG PG DG+PG G+ G G +GLPG+ G PG
Sbjct: 985 LPGIPGMKGAPGIPGAPGQDGLPGLPGVKGDRGFNGLPGEKGEPGP 1030
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLD---GIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL G+PG GM G PG G PG G+PG G K
Sbjct: 734 LPGLPGPKGEAGFPGAPGLQGPAGLPGLPGMKGNPGLPGAPGLAGLPGIPGEK 786
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPGEP---GLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+SG G G DG+PG+P GL G+PG G G+PG G G G+PG G
Sbjct: 1328 LSGIPGKRGNDGIPGKPGPAGLPGLPGMKGESGLPGPQGPAGLPGLPGLKG 1378
>gi|403293243|ref|XP_003937630.1| PREDICTED: collagen alpha-1(XVI) chain [Saimiri boliviensis
boliviensis]
Length = 1604
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1469 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGD 1522
>gi|363737948|ref|XP_425097.3| PREDICTED: gliomedin [Gallus gallus]
Length = 518
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 29/58 (50%), Gaps = 15/58 (25%)
Query: 34 DGRDGLPGEPGLDGIPGRNGM---------------DGIPGKDGLPGKDGIPGTNGTK 76
+G DG PG PG G PG NG G PG+ GLPGKDG+PG G +
Sbjct: 133 NGSDGAPGVPGQKGEPGLNGKRGKMGVPGPKGDQGEKGEPGEIGLPGKDGMPGVKGAR 190
>gi|296207313|ref|XP_002750613.1| PREDICTED: collagen alpha-1(XVI) chain [Callithrix jacchus]
Length = 1586
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 30/53 (56%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1452 AAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGD 1504
>gi|115290|sp|P04258.1|CO3A1_BOVIN RecName: Full=Collagen alpha-1(III) chain
Length = 1049
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
R + G A S I+G G DG+DG PGEPG +G+PG G G+PG G G +G+PG
Sbjct: 290 RGERGEAGSPGIAGPKGEDGKDGSPGEPGANGLPGAAGERGVPGFRGPAGANGLPG 345
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 15/71 (21%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP------------GKDGIPGTNG 74
+ G G DGR+G GEPG G+ G N G+PG+DG P G+ G+PG G
Sbjct: 106 MKGHRGFDGRNGEKGEPGAPGLKGEN---GVPGEDGAPGPMGPRGAPGERGRPGLPGAAG 162
Query: 75 TKTDHYAMGAD 85
+ + A G+D
Sbjct: 163 ARGNDGARGSD 173
>gi|344253578|gb|EGW09682.1| Collagen alpha-1(IV) chain [Cricetulus griseus]
Length = 1614
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 32/55 (58%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG GL G+ G PG PGL G+ G G+ G PG+ G PG G PG G K DH
Sbjct: 767 TGQSGLPGLPGQQGTPGFPGLPGVKGEMGVMGTPGQPGSPGPAGTPGLPGEKGDH 821
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G+ G G G PG+ G PG G+ G G GLPG DGIPG G D G+ +
Sbjct: 937 AGTPGMPGSPGPKGSPGIIGHPGSPGLPGEKGDKGLPGLDGIPGVKGEVGDRVLRGSMSD 996
Query: 88 S-FSDGVLPSVQRAI 101
FS LP I
Sbjct: 997 CVFSPQGLPGTPGPI 1011
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
T + G G G +GLPG PG G G G+ G+PG G PG GIPGT G K +
Sbjct: 620 TGLPGSPGRPGFNGLPGNPGPQGQKGEPGI-GLPGLKGQPGLPGIPGTPGEKGN 672
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G++G+PG G+PG G PG G + +
Sbjct: 402 GFPGQPGAKGDRGLPGRDGIEGLPGPQGVPGLMGQPGAKGEPGEIF 447
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 4 VQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL 63
V G QV E D G + G G G+ G G+PG DG G G G PG G
Sbjct: 164 VPGQAQVKEKGDFAPTGEKGAPGY-GEKGEPGKQGPRGKPGKDGEKGEKGSPGFPGDSGY 222
Query: 64 PGKDGIPGTNGTKTD 78
PG G PG G K +
Sbjct: 223 PGLPGRPGPQGEKGE 237
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 26/46 (56%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
L G G PG PG G+PGR G G G GLPG G PG+ G K +
Sbjct: 452 LKGDKGDPGFPGQPGMPGRAGTPGRDGHPGLPGPKGSPGSVGLKGE 497
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G G PG G K +
Sbjct: 737 VKGEKGFPGFPGLDMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGFPGLPGVKGEMGV 796
Query: 82 MGADTKSFSDG 92
MG + S G
Sbjct: 797 MGTPGQPGSPG 807
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNG-------MDGIPGKDGLPGKDGIPGTNGTK 76
G G+ G PG PG G+PG G + G PG GLPG G PG G +
Sbjct: 527 TGEKGQAGFPGSPGSPGLPGPKGEAGKVVPLPGPPGAAGLPGSPGFPGPQGDR 579
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
++ + G A + + G G G G+ G PG G+PG G G+PG DG+PG G
Sbjct: 930 EKGEKGSAGTPGMPGSPGPKGSPGIIGHPGSPGLPGEKGDKGLPGLDGIPGVKG 983
>gi|17531395|ref|NP_495104.1| Protein BLI-2 [Caenorhabditis elegans]
gi|351050435|emb|CCD64978.1| Protein BLI-2 [Caenorhabditis elegans]
Length = 311
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G +G+DGLPG PGL G PG G DG PG+DG PG+ PG NG
Sbjct: 182 GQPGRNGKDGLPGVPGLPGQPGEPGDDGEPGEDGDPGQ---PGDNG 224
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 44 GLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G PGRNG DG+PG GLPG+ G PG +G
Sbjct: 179 GSKGQPGRNGKDGLPGVPGLPGQPGEPGDDG 209
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 28 SGRIGLDGRDGL---PGEPGLDGIPGRNGMDGIPGKDGLPGK 66
+G+ GL G GL PGEPG DG PG +G G PG +G PGK
Sbjct: 187 NGKDGLPGVPGLPGQPGEPGDDGEPGEDGDPGQPGDNGEPGK 228
>gi|308462704|ref|XP_003093633.1| CRE-COL-122 protein [Caenorhabditis remanei]
gi|308249571|gb|EFO93523.1| CRE-COL-122 protein [Caenorhabditis remanei]
Length = 300
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
++G G DG G PG+PG G G G DG PG+ G+PG DG PG G + A+
Sbjct: 233 VAGLKGKDGAPGAPGQPGPRGGAGEPGQDGAPGQPGVPGADGTPGEKGICPKYCAI 288
>gi|291244784|ref|XP_002742276.1| PREDICTED: type IV collagen alpha 5-like [Saccoglossus kowalevskii]
Length = 1682
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 34/54 (62%), Gaps = 6/54 (11%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGM---DGIPGKDGLPGKDGIPGTNGTKTDH 79
G IGL G G PG+PGL+G PG GM DG+PG+ G PG+DG NG K D
Sbjct: 943 GPIGLPGASGPPGQPGLNGAPGEKGMDGVDGVPGRPGQPGRDGF---NGGKGDS 993
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I G GL G +G+PG PGL+G+ NG G G DG+ G++G PG GTK +
Sbjct: 166 IKGEPGLPGFNGIPGPPGLNGL---NGPKGDKGDDGMKGENGFPGQPGTKGE 214
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
T ++G +G G +G PG PG DGI GR G G+PG+DG G+ G
Sbjct: 560 TGVAGPVGGKGSEGFPGPPGQDGINGRPGQPGLPGRDGSKGEAG 603
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
GLPG+PGL PGR+G G PG G+ G+DG PG G K D +G + S G+
Sbjct: 805 GLPGQPGL---PGRDGERGPPGLPGMQGRDGFPGLVGEKGDMGPIGPAGQPGSPGL 857
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 27/84 (32%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI---------------------------PG 59
+ G+ GL GRDG G PGL G+ GR+G G+ PG
Sbjct: 806 LPGQPGLPGRDGERGPPGLPGMQGRDGFPGLVGEKGDMGPIGPAGQPGSPGLPGDRGFPG 865
Query: 60 KDGLPGKDGIPGTNGTKTDHYAMG 83
+DGLPG+ G PG+ G D G
Sbjct: 866 RDGLPGRQGPPGSPGVIGDKGNTG 889
>gi|441636135|ref|XP_004089980.1| PREDICTED: collagen alpha-1(XVI) chain [Nomascus leucogenys]
Length = 1526
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1391 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGD 1444
>gi|306827437|ref|ZP_07460723.1| collagen family protein 2 [Streptococcus pyogenes ATCC 10782]
gi|304430382|gb|EFM33405.1| collagen family protein 2 [Streptococcus pyogenes ATCC 10782]
Length = 382
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 41/81 (50%), Gaps = 18/81 (22%)
Query: 28 SGRIGLDGRDGLP---------------GEPGLDGIPGRNGMDGIPGKDGLPGKDGI--- 69
+G+ G DG+DGLP G+ G DG+PG++G DG GKDGLPGKDG
Sbjct: 219 AGKDGQDGKDGLPGKDGKDGKDGLPGKDGKDGQDGLPGKDGKDGQNGKDGLPGKDGKDGQ 278
Query: 70 PGTNGTKTDHYAMGADTKSFS 90
PG KT DT +
Sbjct: 279 PGKPAPKTPEVPQKPDTAPHT 299
>gi|222153235|ref|YP_002562412.1| collagen-like surface-anchored protein [Streptococcus uberis 0140J]
gi|222114048|emb|CAR42417.1| collagen-like surface-anchored protein [Streptococcus uberis 0140J]
Length = 484
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 38/65 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G+ G +GR+G G+ G DG GRNG DG GKDG G DG G GT + G D K
Sbjct: 221 NGQDGKNGRNGQDGQKGKDGQNGRNGQDGKAGKDGKSGTDGKNGKAGTDGKNGKSGKDGK 280
Query: 88 SFSDG 92
+ +DG
Sbjct: 281 AGTDG 285
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G++ + +G+ G DG++G G+ G G G+NG G GK+G G+DG G NGT
Sbjct: 255 GKSGTDGKNGKAGTDGKNGKSGKDGKAGTDGKNGRAGTDGKNGKAGQDGKDGKNGT 310
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 37 DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
+G G+PG DG GR+G DG+PG+DG+ GKDG
Sbjct: 375 NGKDGQPGRDGKDGRDGKDGMPGRDGMNGKDG 406
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G+ G +G+DG G+ G G G+NG G GK+G GKDG GT+G G + K+
Sbjct: 240 GQNGRNGQDGKAGKDGKSGTDGKNGKAGTDGKNGKSGKDGKAGTDGKNGRAGTDGKNGKA 299
Query: 89 FSDG 92
DG
Sbjct: 300 GQDG 303
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G+ G DG+ G G+ G G G+NG G GK G GK+G GT+G G D K+
Sbjct: 249 GKAGKDGKSGTDGKNGKAGTDGKNGKSGKDGKAGTDGKNGRAGTDGKNGKAGQDGKDGKN 308
Query: 89 FSDGV 93
+DG+
Sbjct: 309 GTDGL 313
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK 60
D R T+ +G+ G GRDG G G DG+PGR+GM+G G+
Sbjct: 365 DGSRKEVTISNGKDGQPGRDGKDGRDGKDGMPGRDGMNGKDGQ 407
>gi|327269891|ref|XP_003219726.1| PREDICTED: collectin-12-like [Anolis carolinensis]
Length = 769
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
L G+PG G+PG G+ GIPG GLPG G PG
Sbjct: 540 LQGQPGPQGLPGIPGLTGIPGSRGLPGLPGTPG 572
Score = 42.7 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG 62
G G GLPG PGL GIPG G+ G+PG G
Sbjct: 542 GQPGPQGLPGIPGLTGIPGSRGLPGLPGTPG 572
Score = 41.2 bits (95), Expect = 0.084, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 45 LDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
L G PG G+ GIPG G+PG G+PG GT
Sbjct: 540 LQGQPGPQGLPGIPGLTGIPGSRGLPGLPGT 570
>gi|225869058|ref|YP_002745006.1| collagen and fibronectin-binding collagen-like cell
surface-anchored protein FneE [Streptococcus equi subsp.
zooepidemicus]
gi|225702334|emb|CAX00145.1| putative collagen and fibronectin-binding collagen-like cell
surface-anchored protein FneE [Streptococcus equi subsp.
zooepidemicus]
Length = 731
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ G G+DG PG+PG DG PG G G PG+ G+PG G PG +G
Sbjct: 312 AGKDGEKGKDGEPGKPGRDGQPGPKGEKGDPGQQGIPGPKGDPGKDG 358
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGI------PGKDGLPGKDGIPGTNGTKTD 78
G G DG+DG G+PG G G G GI PGKDG GKDG PG G K D
Sbjct: 351 KGDPGKDGQDGKDGQPGPKGEKGDPGQQGIPGPKGDPGKDGQDGKDGQPGPKGEKGD 407
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G+ G G+DG G+ G G PGR+G G G+ G PG+ GIPG G
Sbjct: 305 LPGKQGPAGKDGEKGKDGEPGKPGRDGQPGPKGEKGDPGQQGIPGPKG 352
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G GLPG+ G G G G DG PGK PG+DG PG G K D
Sbjct: 295 GPAGPQGPQGLPGKQGPAGKDGEKGKDGEPGK---PGRDGQPGPKGEKGD 341
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 28/57 (49%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G G DG+DG G+PG G G G GIPG G PG DG G G + + G
Sbjct: 384 KGDPGKDGQDGKDGQPGPKGEKGDPGQQGIPGPKGDPGHDGKDGEKGERGEQGPQGE 440
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 18/64 (28%)
Query: 29 GRIGLDGRDGLPG------EPGLDGIPG---------RNGMDGIPG---KDGLPGKDGIP 70
G+ G DG+DG PG +PG GIPG ++G DG PG + G PG+ GIP
Sbjct: 355 GKDGQDGKDGQPGPKGEKGDPGQQGIPGPKGDPGKDGQDGKDGQPGPKGEKGDPGQQGIP 414
Query: 71 GTNG 74
G G
Sbjct: 415 GPKG 418
>gi|354724553|ref|ZP_09038768.1| YadA domain-containing protein [Enterobacter mori LMG 25706]
Length = 474
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
T + G +G G+DG G+ G+DG G++G++G GK+G G +G G NG T
Sbjct: 288 TGVQGLVGAAGKDGADGKNGIDGKAGKDGVNGSNGKEGKNGVNGKDGANGVTTIITKKEV 347
Query: 85 DTKSFS 90
DTK+ +
Sbjct: 348 DTKTIN 353
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G+ G GL G+ G+ G+ G G DG GK+G+ GK G G NG+ G + K
Sbjct: 273 TGATGVQGLQGLKGDTGVQGLVGAAGKDGADGKNGIDGKAGKDGVNGSNGKEGKNGVNGK 332
Query: 88 SFSDGV 93
++GV
Sbjct: 333 DGANGV 338
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 31/60 (51%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G G GL G G DG G+NG+DG GKDG+ G +G G NG A G T
Sbjct: 281 LQGLKGDTGVQGLVGAAGKDGADGKNGIDGKAGKDGVNGSNGKEGKNGVNGKDGANGVTT 340
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 2 GRVQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD 61
R QG Q LE +R + +G+ G G G+ G GL G G G+ G GKD
Sbjct: 243 ARQQG--QDLEQANRDRTANQHPAMTNGKDGATGATGVQGLQGLKGDTGVQGLVGAAGKD 300
Query: 62 GLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
G GK+GI G G + + G + K+ +G
Sbjct: 301 GADGKNGIDGKAGKDGVNGSNGKEGKNGVNG 331
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G +T + G GL G G+ G G G G +G +GI DG GKDG+ G+NG + +
Sbjct: 271 GATGATGVQGLQGLKGDTGVQGLVGAAGKDGADGKNGI---DGKAGKDGVNGSNGKEGKN 327
Query: 80 YAMGAD 85
G D
Sbjct: 328 GVNGKD 333
>gi|324500170|gb|ADY40089.1| Collagen alpha-2(IV) chain [Ascaris suum]
Length = 1763
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 33/55 (60%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G A + I G GL G G GEPGL GIPG+ G DGIPGK G G G+PG G
Sbjct: 1303 GYAGAAGIKGEPGLPGIPGAKGEPGLSGIPGKRGNDGIPGKPGPAGLPGLPGMKG 1357
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ + G + + G GL G G+ G PGL G PG G+ GIPG+ G+ GK G+PG G
Sbjct: 741 KGEAGFPGAPGLQGPAGLPGLPGMKGNPGLPGAPGLAGLPGIPGEKGIAGKPGLPGLTGA 800
Query: 76 KTD 78
K +
Sbjct: 801 KGE 803
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK------DGLPGKDGIPGTNGTKTD 78
+ G GL G GLPG+ GL G+PG+ G G PG+ GLPGK G PG G K D
Sbjct: 1110 LKGEAGLPGAPGLPGQDGLPGLPGQKGESGFPGQPGLVGPPGLPGKMGAPGIRGEKGD 1167
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNGTKTDH 79
+ G G GR G PG GLDG PG G+ G +PG GLPG+DG+PG G K +
Sbjct: 1083 LPGLPGKPGRPGAPGPKGLDGAPGFPGLKGEAGLPGAPGLPGQDGLPGLPGQKGES 1138
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 31/52 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G GL G G GE GL G+PG GM G PG G PG+DG+PG G K D
Sbjct: 965 AGLPGLPGAPGQKGEQGLAGLPGIPGMKGAPGIPGAPGQDGLPGLPGVKGDR 1016
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 34/65 (52%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
SG G G GLPG PGL G PG G G G+ G PG+ GIPG G K D GA +
Sbjct: 1359 SGLPGPQGPAGLPGLPGLKGEPGLPGFPGQKGETGFPGQPGIPGLPGMKGDSGYPGAPGR 1418
Query: 88 SFSDG 92
+ G
Sbjct: 1419 DGAPG 1423
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNGTKTD 78
L G+DG+PG PGL G+ G+ G+ G+PG+ GLPG G PG G K +
Sbjct: 835 LKGKDGIPGAPGLPGLEGQRGLPGVPGQKGESGLPGLAGAPGFPGAKGE 883
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD-----------GLPGKDGIPGTNGTK 76
+G G GRDGLPG PG+ G G G+ G PGK GLPGKDG+PG G K
Sbjct: 1237 AGLPGAPGRDGLPGLPGMKGEAGLPGLPGQPGKSITGPKGNAGLPGLPGKDGLPGLPGLK 1296
Query: 77 TDH----YAMGADTK 87
+ YA A K
Sbjct: 1297 GEPGKPGYAGAAGIK 1311
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 29/47 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G GL G+DGLPG PGL G PG+ G G G G PG GIPG G
Sbjct: 1278 AGLPGLPGKDGLPGLPGLKGEPGKPGYAGAAGIKGEPGLPGIPGAKG 1324
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 30/51 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G G G G PG PGL+G PG GM G G G PG+DG+PG G K +
Sbjct: 1207 AGAPGFPGLKGEPGLPGLEGQPGPRGMKGEAGLPGAPGRDGLPGLPGMKGE 1257
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 32/56 (57%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ + I G G G GLPGE GLDG+PG+ G G PG GLPG G G+ G
Sbjct: 1154 GKMGAPGIRGEKGDAGLPGLPGERGLDGLPGQKGEAGFPGAPGLPGPVGPKGSAGA 1209
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD------GLPGKDGIPGTNGTKTDHYAMGA 84
G G GLPG PG DG+PG G+ G PGK G+ G+ G+PG G K + G
Sbjct: 1272 TGPKGNAGLPGLPGKDGLPGLPGLKGEPGKPGYAGAAGIKGEPGLPGIPGAKGEPGLSGI 1331
Query: 85 DTKSFSDGV 93
K +DG+
Sbjct: 1332 PGKRGNDGI 1340
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 35/61 (57%), Gaps = 9/61 (14%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIP---GRNGMDGIPGK---DGLPGKD---GIPGTNGTKTD 78
G+ G G G+ GEPGL GIP G G+ GIPGK DG+PGK G+PG G K +
Sbjct: 1299 PGKPGYAGAAGIKGEPGLPGIPGAKGEPGLSGIPGKRGNDGIPGKPGPAGLPGLPGMKGE 1358
Query: 79 H 79
Sbjct: 1359 S 1359
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDHYAMG 83
+ G++G G G G+ GL G+PG G+DG+PG+ G PG G+PG G K A G
Sbjct: 1152 LPGKMGAPGIRGEKGDAGLPGLPGERGLDGLPGQKGEAGFPGAPGLPGPVGPKGSAGAPG 1211
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I G+ G G GLPG G G+PG G G+PG GL G+ G+PG G K +
Sbjct: 1340 IPGKPGPAGLPGLPGMKGESGLPGPQGPAGLPGLPGLKGEPGLPGFPGQKGE 1391
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G GL G G+PGE G+ G PG G+ G G+ G PG+ G+PG G
Sbjct: 770 LPGAPGLAGLPGIPGEKGIAGKPGLPGLTGAKGEAGYPGQPGLPGPKG 817
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 19 IGRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G S G GL G GLPG +PG G+ G G+ G PG+DGLPG G+ G G
Sbjct: 1201 VGPKGSAGAPGFPGLKGEPGLPGLEGQPGPRGMKGEAGLPGAPGRDGLPGLPGMKGEAG 1259
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
+ G G+ G G+PG PG DG+PG G+ G G +GLPG+ G PG
Sbjct: 985 LPGIPGMKGAPGIPGAPGQDGLPGLPGVKGDRGFNGLPGEKGEPGP 1030
Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLD---GIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL G+PG GM G PG G PG G+PG G K
Sbjct: 734 LPGLPGPKGEAGFPGAPGLQGPAGLPGLPGMKGNPGLPGAPGLAGLPGIPGEK 786
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPGEP---GLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+SG G G DG+PG+P GL G+PG G G+PG G G G+PG G
Sbjct: 1328 LSGIPGKRGNDGIPGKPGPAGLPGLPGMKGESGLPGPQGPAGLPGLPGLKG 1378
>gi|291399308|ref|XP_002716034.1| PREDICTED: complement component 1, q subcomponent, gamma
polypeptide-like [Oryctolagus cuniculus]
Length = 245
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+PG PGL G PG++G DG+PG G PG IPGT G K
Sbjct: 34 GIPGMPGLPGTPGKDGHDGLPGPKGEPGIPAIPGTRGPK 72
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 26/48 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G DG DGLPG G GIP G G G+ G PG G PG NG
Sbjct: 41 LPGTPGKDGHDGLPGPKGEPGIPAIPGTRGPKGQKGEPGTPGHPGKNG 88
>gi|395856769|ref|XP_003800791.1| PREDICTED: collagen alpha-1(XVI) chain isoform 1 [Otolemur garnettii]
Length = 1605
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1470 AAAPGRPGPPGKDGTPGRPGSPGAPGLPGQIGREGRQGLPGMRGLPGTKGEKGD 1523
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G GR G PG PGL G GR G G+PG GLPG G G G
Sbjct: 1480 GKDGTPGRPGSPGAPGLPGQIGREGRQGLPGMRGLPGTKGEKGDTG 1525
>gi|348570964|ref|XP_003471266.1| PREDICTED: collagen alpha-1(XVI) chain-like [Cavia porcellus]
Length = 1614
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1479 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGD 1532
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGM--DGIPGKDGLPGKDGIPGTNGT 75
D G A + S + + GLPG PG G+ G G+ G PGK GLPG G PG GT
Sbjct: 726 DKGDACTACPSLQGAVTDMTGLPGRPGPRGVRGPEGVGRPGKPGKPGLPGVQGPPGLKGT 785
Query: 76 KTD--HYAMGADTKSFSDGV--LPSVQ 98
+ + MGA G LP +Q
Sbjct: 786 QGEPGPPGMGAQGPQGEPGAPGLPGIQ 812
>gi|260790533|ref|XP_002590296.1| hypothetical protein BRAFLDRAFT_76549 [Branchiostoma floridae]
gi|229275488|gb|EEN46307.1| hypothetical protein BRAFLDRAFT_76549 [Branchiostoma floridae]
Length = 346
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 31/47 (65%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G DGRDGL G+PG DG PGR+G DG+ G G G G+ G+ G K D
Sbjct: 128 GRDGRDGLAGQPGTDGQPGRDGRDGVQGVAGPAGPVGLQGSPGDKGD 174
>gi|395856771|ref|XP_003800792.1| PREDICTED: collagen alpha-1(XVI) chain isoform 2 [Otolemur garnettii]
Length = 1584
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1449 AAAPGRPGPPGKDGTPGRPGSPGAPGLPGQIGREGRQGLPGMRGLPGTKGEKGD 1502
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G GR G PG PGL G GR G G+PG GLPG G G G
Sbjct: 1459 GKDGTPGRPGSPGAPGLPGQIGREGRQGLPGMRGLPGTKGEKGDTG 1504
>gi|162449206|ref|YP_001611573.1| hypothetical protein sce0936 [Sorangium cellulosum So ce56]
gi|161159788|emb|CAN91093.1| hypothetical protein sce0936 [Sorangium cellulosum So ce56]
Length = 824
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G DG G PG PG G+PG++G +G PG+ G PG+ G PG G +
Sbjct: 25 CGEDGAKGAPGAPGEQGVPGKDGANGEPGQPGEPGEQGEPGAPGEQ 70
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 32/65 (49%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G G G PGEPG G PG G G PG+ G PG+ G PG G + A G D
Sbjct: 71 GAPGAPGEPGAPGEPGAPGEPGAPGEPGAPGEPGAPGEPGAPGEPGAPGEPGAPGEDAPV 130
Query: 89 FSDGV 93
+S+
Sbjct: 131 WSNAA 135
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 26/52 (50%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G G G G PGEPG G PG G G PG+ G PG+D +N HY
Sbjct: 89 GEPGAPGEPGAPGEPGAPGEPGAPGEPGAPGEPGAPGEDAPVWSNAANLAHY 140
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G+ G+DG GEPG G PG G G PG+ G PG G PG G
Sbjct: 38 GEQGVPGKDGANGEPGQPGEPGEQGEPGAPGEQGAPGAPGEPGAPG 83
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 26/48 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G+ G +G G PGEPG G PG G G PG G PG G PG G
Sbjct: 42 VPGKDGANGEPGQPGEPGEQGEPGAPGEQGAPGAPGEPGAPGEPGAPG 89
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 25/46 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G G PGEPG G PG G G PG+ G PG+ G PG G
Sbjct: 65 GAPGEQGAPGAPGEPGAPGEPGAPGEPGAPGEPGAPGEPGAPGEPG 110
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 25/46 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G G G PG PG G PG G G PG+ G PG+ G PG G
Sbjct: 53 GQPGEPGEQGEPGAPGEQGAPGAPGEPGAPGEPGAPGEPGAPGEPG 98
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G G PGE PG G PG G G PG+ G PG+ G PG G
Sbjct: 56 GEPGEQGEPGAPGEQGAPGAPGEPGAPGEPGAPGEPGAPGEPGAPGEPG 104
>gi|431905142|gb|ELK10193.1| Collagen alpha-1(IV) chain [Pteropus alecto]
Length = 1464
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL GIPGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 477 PGKPGLPGIPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 515
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG GM G G GLPG G PG G
Sbjct: 888 IGLPGLPGPKGEPGLPGYPGNPGMKGSVGDIGLPGLPGTPGAKG 931
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G G G G PG PGL G+PG G DG+P GLPG G PG
Sbjct: 367 TFPGMKGDKGEFGFPGAPGLPGLPGTPGQDGLP---GLPGPKGEPG 409
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G GEPG G PG++G +G PG GLPG G PG G
Sbjct: 136 GEKGEQGEPGKRGKPGKDGENGQPGTPGLPGDPGYPGEPG 175
>gi|395534384|ref|XP_003769222.1| PREDICTED: collagen alpha-1(XXI) chain isoform 2 [Sarcophilus
harrisii]
Length = 954
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + + G+ GL G G PG+PG G PG+ G DG PG G+ G GIPG+ G
Sbjct: 433 DVGSTPAPCVCPPGKPGLQGPKGEPGQPGNHGYPGQPGQDGKPGYQGISGNPGIPGSPGI 492
Query: 76 K 76
+
Sbjct: 493 Q 493
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---------GKDGLPGKDGIPGTNGTKTD 78
G G G G PG+PG DG PG G+ G P G GLPG G PG G K D
Sbjct: 455 GEPGQPGNHGYPGQPGQDGKPGYQGISGNPGIPGSPGIQGARGLPGYKGEPGRGGNKGD 513
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G G GL G+ G G PG G G PG +GL G+DG PG GT
Sbjct: 605 GFPGSQGLMGQKGETGPPGPQGKKGAPGLNGLMGQDGSPGQPGT 648
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNG 74
+G+ G G +G GEPG+ G PG G+ G G+ G P GK G PG NG
Sbjct: 586 TGQQGAPGPEGQRGEPGIPGFPGSQGLMGQKGETGPPGPQGKKGAPGLNG 635
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
SG G DG+DGL G G G G+ G G G+ G PG G PG+ G
Sbjct: 565 SGEPGRDGKDGLMGSQGFKGETGQQGAPGPEGQRGEPGIPGFPGSQG 611
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G+ G G PG G G G++G+ G+DG PG+ G PG G +
Sbjct: 606 FPGSQGLMGQKGETGPPGPQGKKGAPGLNGLMGQDGSPGQPGTPGLKGNR 655
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I G G+ G GLP GEPG G G G+ G PG+ G+PG G G G K
Sbjct: 486 IPGSPGIQGARGLPGYKGEPGRGGNKGDRGLPGFPGQHGMPGSKGDMGPKGEK 538
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ GR G GRDG G G G G G G PG +G G+ GIPG G++
Sbjct: 561 LPGRSGEPGRDGKDGLMGSQGFKGETGQQGAPGPEGQRGEPGIPGFPGSQ 610
>gi|301604858|ref|XP_002932077.1| PREDICTED: collagen alpha-1(VI) chain-like [Xenopus (Silurana)
tropicalis]
Length = 1025
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G G+ GE G DG PG NG DG PG G PG G PG+NGTK
Sbjct: 497 GAKGLPGEQGIAGERGDDGRPG-NGTDGFPGFQGYPGSRGDPGSNGTK 543
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
I G+ G DG +GLPG PG DG PG G G PG G G+ G+PGT GT
Sbjct: 354 IDGQKGEDGYNGLPGCKGSPGFDGAPGSPGPKGDPGSYGPKGEKGVPGTPGT 405
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+ G+DG DG GE G +G+PG G G G G PG G PG+ G K
Sbjct: 347 GKRGIDGIDGQKGEDGYNGLPGCKGSPGFDGAPGSPGPKGDPGSYGPK 394
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 32/57 (56%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GR+ ST +G G G +G GE G G G G DG PGK G PG+ G PG +G +
Sbjct: 407 GRSGSTGNTGDKGDPGPNGSAGEKGESGDEGDAGADGPPGKRGEPGEQGPPGVSGAR 463
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G G G G+DG G +G +G+PG G PG DG PG+ G K D
Sbjct: 338 GAKGSKGEKGKRGIDGIDGQKGEDGYNGLPGCKGSPGFDGAPGSPGPKGD 387
>gi|384110826|gb|AFH66980.1| ficolin, partial [Enhydris polylepis]
Length = 160
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 21 RAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPGTNGTKT 77
R IS +I L G+ G+PG PG+ GI G G++G PG GL G+ DGIPG G K
Sbjct: 37 RTEHQCISDKIILQGQPGIPGIPGVPGINGSEGLNGDPGPQGLSGEIGFDGIPGVAGPKG 96
Query: 78 D 78
D
Sbjct: 97 D 97
>gi|395730853|ref|XP_002811187.2| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(XVI) chain [Pongo
abelii]
Length = 1593
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1458 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGD 1511
>gi|308468552|ref|XP_003096518.1| hypothetical protein CRE_09727 [Caenorhabditis remanei]
gi|308242968|gb|EFO86920.1| hypothetical protein CRE_09727 [Caenorhabditis remanei]
Length = 375
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 25/45 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
SG +G G+ G PG+PG G PG G G PG G PG G PG
Sbjct: 74 FSGHLGFPGQPGFPGQPGFPGQPGFPGPSGYPGTPGFPGHPGFPG 118
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 24/46 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR G G G PG+PG G PG G G PG G PG G PG G
Sbjct: 70 GRSGFSGHLGFPGQPGFPGQPGFPGQPGFPGPSGYPGTPGFPGHPG 115
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 24/42 (57%)
Query: 30 RIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
R G G+ G PG+PG G PG G G PG+ G PG G PG
Sbjct: 137 RSGFPGQPGFPGQPGFPGQPGFPGPSGYPGRSGFPGHPGFPG 178
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 22/39 (56%)
Query: 36 RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
R G PG+PG G PG G G PG G PG+ G PG G
Sbjct: 137 RSGFPGQPGFPGQPGFPGQPGFPGPSGYPGRSGFPGHPG 175
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 29 GRIGLDGRDGLPGEPGL---DGIPGRNGMDG---IPGKDGLPGKDGIPGTNG 74
GR G G G PG+PG G PGR+G G PG+ G PG+ G PG G
Sbjct: 46 GRSGFSGHLGFPGQPGFPGPSGYPGRSGFSGHLGFPGQPGFPGQPGFPGQPG 97
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNG 74
I G+ G PG PG G PGR+G G PG+ G PG G PG +G
Sbjct: 27 IRTPGQPGQPGFPGRSGYPGRSGFSGHLGFPGQPGFPGPSGYPGRSG 73
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK 66
G+ G G+ G PG+PG G G G G PG G PG+
Sbjct: 80 FPGQPGFPGQPGFPGQPGFPGPSGYPGTPGFPGHPGFPGQ 119
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 25/58 (43%)
Query: 17 RDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
R G+ GR G GR G G G G PG G G PG+ G G G PG G
Sbjct: 28 RTPGQPGQPGFPGRSGYPGRSGFSGHLGFPGQPGFPGPSGYPGRSGFSGHLGFPGQPG 85
>gi|395534382|ref|XP_003769221.1| PREDICTED: collagen alpha-1(XXI) chain isoform 1 [Sarcophilus
harrisii]
Length = 957
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + + G+ GL G G PG+PG G PG+ G DG PG G+ G GIPG+ G
Sbjct: 436 DVGSTPAPCVCPPGKPGLQGPKGEPGQPGNHGYPGQPGQDGKPGYQGISGNPGIPGSPGI 495
Query: 76 K 76
+
Sbjct: 496 Q 496
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---------GKDGLPGKDGIPGTNGTKTD 78
G G G G PG+PG DG PG G+ G P G GLPG G PG G K D
Sbjct: 458 GEPGQPGNHGYPGQPGQDGKPGYQGISGNPGIPGSPGIQGARGLPGYKGEPGRGGNKGD 516
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G G GL G+ G G PG G G PG +GL G+DG PG GT
Sbjct: 608 GFPGSQGLMGQKGETGPPGPQGKKGAPGLNGLMGQDGSPGQPGT 651
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNG 74
+G+ G G +G GEPG+ G PG G+ G G+ G P GK G PG NG
Sbjct: 589 TGQQGAPGPEGQRGEPGIPGFPGSQGLMGQKGETGPPGPQGKKGAPGLNG 638
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
SG G DG+DGL G G G G+ G G G+ G PG G PG+ G
Sbjct: 568 SGEPGRDGKDGLMGSQGFKGETGQQGAPGPEGQRGEPGIPGFPGSQG 614
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G+ G G PG G G G++G+ G+DG PG+ G PG G +
Sbjct: 609 FPGSQGLMGQKGETGPPGPQGKKGAPGLNGLMGQDGSPGQPGTPGLKGNR 658
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I G G+ G GLP GEPG G G G+ G PG+ G+PG G G G K
Sbjct: 489 IPGSPGIQGARGLPGYKGEPGRGGNKGDRGLPGFPGQHGMPGSKGDMGPKGEK 541
>gi|354472387|ref|XP_003498421.1| PREDICTED: collagen alpha-1(XVI) chain [Cricetulus griseus]
Length = 1589
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1454 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGD 1507
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 38 GLPGEPGLDGIPGRNGM--DGIPGKDGLPGKDGIPGTNGTKTD 78
GLPG+PG G PG G+ G PG+ GLPG G PG GT+ +
Sbjct: 757 GLPGKPGPKGEPGPEGVGRPGKPGQPGLPGVQGPPGLKGTQGE 799
>gi|33341666|gb|AAQ15204.1|AF370368_1 FP1572 [Homo sapiens]
Length = 218
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 83 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGD 136
>gi|268531284|ref|XP_002630768.1| C. briggsae CBR-BLI-2 protein [Caenorhabditis briggsae]
Length = 311
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 30/43 (69%), Gaps = 3/43 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G+DGLPG PGL G PG G DG PG+DG PG+ PG NG
Sbjct: 185 GRNGKDGLPGVPGLPGQPGEPGEDGQPGEDGDPGQ---PGDNG 224
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 26/44 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
SGR G DG G+PG PG G PG +G G G G PG +G PG
Sbjct: 184 SGRNGKDGLPGVPGLPGQPGEPGEDGQPGEDGDPGQPGDNGEPG 227
>gi|26334095|dbj|BAC30765.1| unnamed protein product [Mus musculus]
Length = 1580
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1445 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGD 1498
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGM--DGIPGKDGLPGKDGIPGTN 73
R + G + S + L GLPG+PG G PG G+ G PG+ GLPG G PG
Sbjct: 726 RGEKGDGCTACPSLQGALTDVSGLPGKPGPKGEPGPEGVGHPGKPGQPGLPGVQGPPGPK 785
Query: 74 GTKTD 78
GT+ +
Sbjct: 786 GTQGE 790
>gi|227500531|ref|NP_082542.3| collagen alpha-1(XVI) chain precursor [Mus musculus]
gi|143955304|sp|Q8BLX7.2|COGA1_MOUSE RecName: Full=Collagen alpha-1(XVI) chain; Flags: Precursor
Length = 1580
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1445 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGD 1498
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 37 DGLPGEPGLDGIPGRNGM--DGIPGKDGLPGKDGIPGTNGTKTD 78
GLPG+PG G PG G+ G PG+ GLPG G PG GT+ +
Sbjct: 747 SGLPGKPGPKGEPGPEGVGHPGKPGQPGLPGVQGPPGPKGTQGE 790
>gi|180758|gb|AAA58427.1| alpha-1 type XVI collagen [Homo sapiens]
Length = 1603
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1468 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGD 1521
>gi|426250102|ref|XP_004018777.1| PREDICTED: collagen alpha-1(XXI) chain isoform 1 [Ovis aries]
Length = 957
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + I G+ GL G G PG+PG G PG+ G DG PG G+ G G+PG+ G
Sbjct: 436 DVGSTAAPCICPPGKPGLQGPKGDPGQPGNPGYPGQPGQDGKPGYQGIAGSPGVPGSPGI 495
Query: 76 K 76
+
Sbjct: 496 Q 496
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 12/72 (16%)
Query: 19 IGRAISTVISGRIGLDGRDGLP---------GEPGLDGIPGRNGMDGIPGKDGLPGKD-- 67
+G+ + I G +G DG G P GEPGL G+PG +G+ G PG G PG+
Sbjct: 628 LGKKGAPGIPGLMGTDGSPGQPGAPGSKGNKGEPGLQGLPGASGLKGEPGAVGPPGEPGY 687
Query: 68 -GIPGTNGTKTD 78
G+PG G K D
Sbjct: 688 LGLPGIQGKKGD 699
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G +G G G+PG G DG PG+ G G G G PG G+PG +G K + A+G
Sbjct: 626 GPLGKKGAPGIPGLMGTDGSPGQPGAPGSKGNKGEPGLQGLPGASGLKGEPGAVG 680
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G A S + G G+ G GLP GEPG DG G G+ G PG G+PG G G G K
Sbjct: 482 GIAGSPGVPGSPGIQGAQGLPGYKGEPGRDGEKGDRGLPGFPGLHGIPGSKGEMGPKGEK 541
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G G PG G+ G+PG++G G G+
Sbjct: 846 GLPGRDGVPGLMGAPGRPGAKGLKGLPGRNGAKGSQGL 883
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 31/67 (46%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G G G GE G+ G G NG GIPG G+PG G G G K + A GA
Sbjct: 690 LPGIQGKKGDKGNQGERGIQGQKGENGRPGIPGSQGIPGHHGAKGERGEKGEPGARGATG 749
Query: 87 KSFSDGV 93
GV
Sbjct: 750 AKGESGV 756
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G G G+ G PG+ G PG G G+PG G PG+DG G G
Sbjct: 473 GQDGKPGYQGIAGSPGVPGSPGIQGAQGLPGYKGEPGRDGEKGDRG 518
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G+ G G+PG PG+ G G G G PG+DG G G+PG G
Sbjct: 479 GYQGIAGSPGVPGSPGIQGAQGLPGYKGEPGRDGEKGDRGLPGFPG 524
>gi|410262774|gb|JAA19353.1| collagen, type XVI, alpha 1 [Pan troglodytes]
gi|410332327|gb|JAA35110.1| collagen, type XVI, alpha 1 [Pan troglodytes]
Length = 1604
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1469 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGD 1522
>gi|426250104|ref|XP_004018778.1| PREDICTED: collagen alpha-1(XXI) chain isoform 2 [Ovis aries]
Length = 954
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + I G+ GL G G PG+PG G PG+ G DG PG G+ G G+PG+ G
Sbjct: 433 DVGSTAAPCICPPGKPGLQGPKGDPGQPGNPGYPGQPGQDGKPGYQGIAGSPGVPGSPGI 492
Query: 76 K 76
+
Sbjct: 493 Q 493
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 12/72 (16%)
Query: 19 IGRAISTVISGRIGLDGRDGLP---------GEPGLDGIPGRNGMDGIPGKDGLPGKD-- 67
+G+ + I G +G DG G P GEPGL G+PG +G+ G PG G PG+
Sbjct: 625 LGKKGAPGIPGLMGTDGSPGQPGAPGSKGNKGEPGLQGLPGASGLKGEPGAVGPPGEPGY 684
Query: 68 -GIPGTNGTKTD 78
G+PG G K D
Sbjct: 685 LGLPGIQGKKGD 696
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G +G G G+PG G DG PG+ G G G G PG G+PG +G K + A+G
Sbjct: 623 GPLGKKGAPGIPGLMGTDGSPGQPGAPGSKGNKGEPGLQGLPGASGLKGEPGAVG 677
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G A S + G G+ G GLP GEPG DG G G+ G PG G+PG G G G K
Sbjct: 479 GIAGSPGVPGSPGIQGAQGLPGYKGEPGRDGEKGDRGLPGFPGLHGIPGSKGEMGPKGEK 538
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G G PG G+ G+PG++G G G+
Sbjct: 843 GLPGRDGVPGLMGAPGRPGAKGLKGLPGRNGAKGSQGL 880
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 31/67 (46%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G G G GE G+ G G NG GIPG G+PG G G G K + A GA
Sbjct: 687 LPGIQGKKGDKGNQGERGIQGQKGENGRPGIPGSQGIPGHHGAKGERGEKGEPGARGATG 746
Query: 87 KSFSDGV 93
GV
Sbjct: 747 AKGESGV 753
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G G G+ G PG+ G PG G G+PG G PG+DG G G
Sbjct: 470 GQDGKPGYQGIAGSPGVPGSPGIQGAQGLPGYKGEPGRDGEKGDRG 515
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G+ G G+PG PG+ G G G G PG+DG G G+PG G
Sbjct: 476 GYQGIAGSPGVPGSPGIQGAQGLPGYKGEPGRDGEKGDRGLPGFPG 521
>gi|301604358|ref|XP_002931863.1| PREDICTED: hypothetical protein LOC100492984 [Xenopus (Silurana)
tropicalis]
Length = 1650
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 34/59 (57%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G S + G G G GLPG PGL G GR G G PG+ G PG+DGIPG +G K +
Sbjct: 1087 GSPGSPGLKGVDGPTGNSGLPGSPGLRGESGRPGPQGTPGEKGQPGQDGIPGPSGLKGE 1145
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G GL G G PG PGL G+ G G G+PG GL G+ G PG GT + G D
Sbjct: 1078 GDPGLPGFPGSPGSPGLKGVDGPTGNSGLPGSPGLRGESGRPGPQGTPGEKGQPGQD 1134
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
G+ G G++G PG PG G PG G+ G+PG G G G+PG G+ G D
Sbjct: 1040 FPGQKGEPGQNGFPGSPGSKGNPGNPGLPGLPGISGPKGDPGLPGFPGSPGSPGLKGVDG 1099
Query: 87 KSFSDGV 93
+ + G+
Sbjct: 1100 PTGNSGL 1106
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 24/39 (61%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG 65
I G G G G G PGLDG+PGR+G GIPG G PG
Sbjct: 553 IKGEKGDPGFPGPAGSPGLDGVPGRDGTPGIPGPKGEPG 591
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 20 GRAISTVISGRIGLDGRDGL-----PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G A S SG G G G+ PG PG G PG+NG G PG G PG G+PG G
Sbjct: 1013 GSAGSPGFSGLKGEKGEPGISGAGIPGFPGQKGEPGQNGFPGSPGSKGNPGNPGLPGLPG 1072
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 13 VHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD----------- 61
V ++ D G I G G G GLPG+PG+ G+PG G GIPG
Sbjct: 656 VMEKGDFGPPGLPGIPGDAGTPGEPGLPGQPGIPGVPGSKGEPGIPGIGLPGSAGGDPGF 715
Query: 62 GLPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
GLPG G PG G K G S G+
Sbjct: 716 GLPGLPGSPGPAGLKGSQGPKGESGFPGSPGL 747
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 27 ISGRIGLDGRDGLPG--EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G GL G GLPG PGL G+PG G G G G PG G+PG G
Sbjct: 1136 IPGPSGLKGEPGLPGFGSPGLPGLPGSQGQKGDAGLSGSPGNPGLPGFKG 1185
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 40/89 (44%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ + G S+ +SG G G G G PG GIPG G+ G+ G GLPG+ G G G
Sbjct: 928 KGEPGLPGSSGLSGAKGAAGLPGNSGSPGQIGIPGSPGLPGLKGDSGLPGQPGTSGPPGL 987
Query: 76 KTDHYAMGADTKSFSDGVLPSVQRAIAAG 104
K MG S G R +AG
Sbjct: 988 KGSMGEMGLPGPPGSKGSPGQPGRPGSAG 1016
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G GLPG G DG PG+ G+ G+PG +G G+ G+PG G
Sbjct: 870 GPAGNPGNPGLPGSKGNDGNPGQPGLSGLPGAEGEKGERGLPGPPG 915
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 32/67 (47%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G G GLPG PG G PG G+DG G GLPG G+ G +G G
Sbjct: 1070 LPGISGPKGDPGLPGFPGSPGSPGLKGVDGPTGNSGLPGSPGLRGESGRPGPQGTPGEKG 1129
Query: 87 KSFSDGV 93
+ DG+
Sbjct: 1130 QPGQDGI 1136
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPG------RNGMDGIPGKDGLPGKDGIPGTNGT 75
G GL G GLPG+PG G PG G+ G PG G PG+ G PG+ G+
Sbjct: 965 GLPGLKGDSGLPGQPGTSGPPGLKGSMGEMGLPGPPGSKGSPGQPGRPGSAGS 1017
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
ISG G+ G G GEPG +G PG G G PG GLP G+PG +G K D
Sbjct: 1032 ISG-AGIPGFPGQKGEPGQNGFPGSPGSKGNPGNPGLP---GLPGISGPKGD 1079
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
++ + G GL G G PG G G G+ G DGIPG GL G+ G+PG
Sbjct: 1103 NSGLPGSPGLRGESGRPGPQGTPGEKGQPGQDGIPGPSGLKGEPGLPG 1150
>gi|431913213|gb|ELK14895.1| Collagen alpha-1(IV) chain [Pteropus alecto]
Length = 1521
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 32/55 (58%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG GL G+ G PG PG G G G+ G PG+ G PG G+PG+ G K DH
Sbjct: 692 TGQSGLPGLPGQQGTPGLPGFPGPKGEMGVMGTPGQPGSPGPAGVPGSPGEKGDH 746
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G PGR+G++G+PG G+PG G PG G + Y
Sbjct: 383 GFPGQPGAKGDRGSPGRDGLEGLPGPKGIPGLIGQPGAKGEPGEIY 428
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 27/49 (55%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
I L G G PG PG G+PGR G G G GLPG G PG+ G K D
Sbjct: 431 IRLKGDKGDPGFPGQPGMPGRAGSPGRDGHPGLPGPKGSPGSIGLKGDR 479
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
IG+ GR G G+PG+ G PG G G G GLPG G PG G+
Sbjct: 916 IGIPGRPGDKGDPGIAGFPGSPGEKGEKGSTGLPGMPGSPGPKGS 960
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 26/50 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I+G G G G G GL G+PG G G PG G PG G+PG G K
Sbjct: 930 IAGFPGSPGEKGEKGSTGLPGMPGSPGPKGSPGSAGYPGSPGLPGEKGDK 979
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G G+PG G K +
Sbjct: 662 VKGEKGFPGFPGLDMPGPKGDKGTQGLPGLTGQSGLPGLPGQQGTPGLPGFPGPKGEMGV 721
Query: 82 MGADTKSFSDG 92
MG + S G
Sbjct: 722 MGTPGQPGSPG 732
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+ G+ G G G GEPG DGIPG G G P GLPG+ G PG G+K + + G
Sbjct: 989 LPGQPGPTGPAGQKGEPGSDGIPGSAGEKGEP---GLPGR-GFPGFPGSKGEKGSKG 1041
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 27 ISGRIGLDGRDGLPGEPGLD-------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
I G IG G G PGE D G PG G G+PG+ G PG+DG PG G K
Sbjct: 411 IPGLIGQPGAKGEPGEIYFDIRLKGDKGDPGFPGQPGMPGRAGSPGRDGHPGLPGPKGSP 470
Query: 80 YAMG 83
++G
Sbjct: 471 GSIG 474
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPG 71
D+ D G A G G G GLPG PG G G G G PG GLPG+ G+PG
Sbjct: 924 DKGDPGIAGFPGSPGEKGEKGSTGLPGMPGSPGPKGSPGSAGYPGSPGLPGEKGDKGLPG 983
Query: 72 TNGTK 76
+G +
Sbjct: 984 LDGIR 988
>gi|380796485|gb|AFE70118.1| gliomedin, partial [Macaca mulatta]
Length = 518
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 27/47 (57%)
Query: 37 DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+GL G+PG G G G +G GK G+PG G PG G K DH +G
Sbjct: 123 NGLDGQPGPQGPKGEKGANGKRGKMGIPGAAGNPGERGEKGDHGELG 169
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 26/50 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G +G+ G G PG G PG G G G+ GL G +G PG G K D
Sbjct: 136 GEKGANGKRGKMGIPGAAGNPGERGEKGDHGELGLQGNEGPPGQKGEKGD 185
Score = 37.7 bits (86), Expect = 0.89, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 24/43 (55%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GLDG+ G G G G G+ G GIPG G PG+ G G +G
Sbjct: 124 GLDGQPGPQGPKGEKGANGKRGKMGIPGAAGNPGERGEKGDHG 166
>gi|397515898|ref|XP_003828178.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(XVI) chain [Pan
paniscus]
Length = 1604
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1469 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGD 1522
>gi|344245027|gb|EGW01131.1| Collagen alpha-1(XVI) chain [Cricetulus griseus]
Length = 1611
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1476 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGD 1529
>gi|119628001|gb|EAX07596.1| collagen, type XVI, alpha 1, isoform CRA_b [Homo sapiens]
Length = 1604
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1469 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGD 1522
>gi|100913220|ref|NP_001847.3| collagen alpha-1(XVI) chain precursor [Homo sapiens]
gi|143811380|sp|Q07092.2|COGA1_HUMAN RecName: Full=Collagen alpha-1(XVI) chain; Flags: Precursor
gi|189442859|gb|AAI67814.1| Collagen, type XVI, alpha 1 [synthetic construct]
Length = 1604
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1469 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGD 1522
>gi|426328717|ref|XP_004025396.1| PREDICTED: collagen alpha-1(XVI) chain [Gorilla gorilla gorilla]
Length = 1604
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1469 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGD 1522
>gi|380797747|gb|AFE70749.1| collagen alpha-1(XVI) chain precursor, partial [Macaca mulatta]
Length = 700
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 565 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGD 618
>gi|350585825|ref|XP_003482058.1| PREDICTED: collagen alpha-1(XVI) chain-like [Sus scrofa]
Length = 470
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 335 VAAPGRPGPPGKDGAPGRPGSPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGD 388
>gi|119628000|gb|EAX07595.1| collagen, type XVI, alpha 1, isoform CRA_a [Homo sapiens]
Length = 1602
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1467 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGD 1520
>gi|341900322|gb|EGT56257.1| hypothetical protein CAEBREN_24216 [Caenorhabditis brenneri]
Length = 311
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 30/43 (69%), Gaps = 3/43 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G+DGLPG PGL G PG G DG PG+DG PG+ PG NG
Sbjct: 185 GRNGKDGLPGVPGLPGQPGEPGEDGEPGEDGDPGQ---PGDNG 224
>gi|341888544|gb|EGT44479.1| hypothetical protein CAEBREN_32335 [Caenorhabditis brenneri]
Length = 460
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 30/42 (71%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
I G+ GL G G PGEPGLDG PG++G+ G PG+DG+ G G
Sbjct: 396 IPGKDGLGGDQGAPGEPGLDGEPGQDGIPGNPGRDGINGHGG 437
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 25/40 (62%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G PG PG DG+ G G G PG DG PG+DGIPG G
Sbjct: 389 GPRGAPGIPGKDGLGGDQGAPGEPGLDGEPGQDGIPGNPG 428
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 30 RIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
R G G G+PG+ GL G PG G+DG PG+DG+PG G G NG
Sbjct: 387 RQGPRGAPGIPGKDGLGGDQGAPGEPGLDGEPGQDGIPGNPGRDGING 434
>gi|149694269|ref|XP_001504308.1| PREDICTED: complement C1q subcomponent subunit C-like [Equus
caballus]
Length = 245
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+PG PG+ G PG++G DG+PG G PG +PGT G K
Sbjct: 34 GIPGMPGMPGTPGKDGHDGLPGPKGEPGIPAVPGTQGPK 72
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 26/48 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G DG DGLPG G GIP G G G+ G PG G PG NG
Sbjct: 41 MPGTPGKDGHDGLPGPKGEPGIPAVPGTQGPKGQKGEPGTPGHPGKNG 88
>gi|147898761|ref|NP_001080437.1| collagen alpha-1(VI) chain precursor [Xenopus laevis]
gi|82210072|sp|Q801S8.1|CO6A1_XENLA RecName: Full=Collagen alpha-1(VI) chain; Flags: Precursor
gi|28703819|gb|AAH47255.1| Col6a1 protein [Xenopus laevis]
Length = 1045
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G G+ GE G DG PG NG DG PG G PG G PG+NGTK
Sbjct: 517 GAKGLPGEQGIAGERGDDGRPG-NGTDGFPGFQGYPGSRGDPGSNGTK 563
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G G G G+DG G +G +G+PG G PG DG PG++G K D
Sbjct: 337 GAKGSKGDKGKRGIDGVDGQKGEDGYNGLPGCKGSPGFDGAPGSSGPKGD 386
>gi|403265884|ref|XP_003925141.1| PREDICTED: collagen alpha-6(VI) chain [Saimiri boliviensis
boliviensis]
Length = 2269
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 27/49 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G DGL GE G DG+PGR G G G G PGK G PG G K
Sbjct: 1458 EGEAGESGIDGLNGEQGDDGLPGRKGEKGDEGSQGSPGKRGTPGDRGAK 1506
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 21 RAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIP---GTNGTKT 77
R + IG DG G G PG G PG G +G G++G+ G G P G GTK
Sbjct: 1382 RTCCCLFCKCIGEDGTMGDSGSPGKKGPPGFKGSEGYLGEEGIAGDRGAPGPVGEQGTKG 1441
Query: 78 DH 79
H
Sbjct: 1442 CH 1443
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 28/56 (50%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G G G G G GL+G G G GI G +G G DG+PG G K D + G+
Sbjct: 1438 GTKGCHGTKGPKGNRGLNGQEGEAGESGIDGLNGEQGDDGLPGRKGEKGDEGSQGS 1493
>gi|341904612|gb|EGT60445.1| hypothetical protein CAEBREN_21313 [Caenorhabditis brenneri]
Length = 311
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 30/43 (69%), Gaps = 3/43 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G+DGLPG PGL G PG G DG PG+DG PG+ PG NG
Sbjct: 185 GRNGKDGLPGVPGLPGQPGEPGEDGEPGEDGDPGQ---PGDNG 224
>gi|340722548|ref|XP_003399666.1| PREDICTED: collagen alpha-2(IV) chain-like [Bombus terrestris]
Length = 1839
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 17/100 (17%)
Query: 4 VQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG---- 59
++G + +H R+ + G IG G DG PG PG G+PG G G PG
Sbjct: 1226 IRGEQGFIGLHGRKGM--------KGDIGFPGPDGFPGVPGFPGLPGDRGPQGFPGLPGE 1277
Query: 60 -----KDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGVL 94
+DGLPG DG+PGT G A G + G++
Sbjct: 1278 LAEPSEDGLPGLDGLPGTPGIPGQKGAPGEYGYNGPKGIM 1317
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G +GL G LPG PGL G+ G G DGIPG+ G PG +G+PG G +
Sbjct: 1451 LPGDVGLPG---LPGFPGLQGMIGEQGEDGIPGRKGEPGMEGLPGLPGPE 1497
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 28/51 (54%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G +G G GL G PGLDG+ G G G PG++GLPG G G G T
Sbjct: 850 KGDVGDPGPRGLQGRPGLDGVKGTKGSKGAPGQEGLPGLQGAKGQRGYSTQ 900
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 36 RDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
R GLPG+ PGL G PG GM G G+DG+PG+ G PG G
Sbjct: 1448 RKGLPGDVGLPGLPGFPGLQGMIGEQGEDGIPGRKGEPGMEG 1489
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---------GLPGKDGIPGTNGTKT 77
I G G G G PG PG DG G +G+ G+PG + G PG GIPGT G
Sbjct: 664 IQGPKGEKGDFGPPGFPGRDGFAGLDGIPGVPGDNASIPKEFLRGEPGFPGIPGTKGPMG 723
Query: 78 DHYAMGADTKSFSDGVL 94
D G +S+ V+
Sbjct: 724 DKGGKGEPGESYPPPVI 740
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G+PG PG +G+ G +G+DG G DG G G+PG +G +
Sbjct: 112 GFPGAPGVPGNPGPEGVMGPDGLDGCNGTDGRAGAPGLPGMHGER 156
Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G+DGR G PGEPG+ GRNG G+ G +G G DG G G K + MG D
Sbjct: 1063 GFPGMDGRHGPPGEPGI----GRNGSPGLKGIEGDTGFDGFNGLPGPKGEVGDMGPD 1115
>gi|402588679|gb|EJW82612.1| collagen alpha-6(IV) chain [Wuchereria bancrofti]
Length = 471
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG---KDGLPGKDGIPGTNGTKTDHYAMGAD 85
G +GL G G PG PGL G+ G G+ G PG + G+PGK G PG G K + A GA
Sbjct: 63 GDVGLSGAPGAPGLPGLPGLKGEPGLPGFPGPKGEPGIPGKPGFPGLQGIKGECGAPGAP 122
Query: 86 TKSFSDGVL 94
+ + G +
Sbjct: 123 GREGAPGKI 131
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 27/46 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G GL G G GEPGL G+PG G DG PG G+ G G+PG G
Sbjct: 18 GDAGLPGIPGAKGEPGLPGLPGLRGKDGFPGPPGIVGLAGLPGAKG 63
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G GL G G+PG + GL GIPG G G+PG GL GKDG PG G
Sbjct: 1 MKGEPGLPGYPGVPGAKGDAGLPGIPGAKGEPGLPGLPGLRGKDGFPGPPG 51
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G GL G+DG PG PG+ G+ G G G G G PG G+PG G K +
Sbjct: 34 LPGLPGLRGKDGFPGPPGIVGLAGLPGAKGDVGLSGAPGAPGLPGLPGLKGE 85
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G GLPG PG G PG G+ G+ GKDG PG GI G G
Sbjct: 12 GVPGAKGDAGLPGIPGAKGEPGLPGLPGLRGKDGFPGPPGIVGLAG 57
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ D+G + + G GL G G PG PG PG G GIPGK G PG GI G G
Sbjct: 62 KGDVGLSGAPGAPGLPGLPGLKGEPGLPGF---PGPKGEPGIPGKPGFPGLQGIKGECGA 118
>gi|410032595|ref|XP_513270.4| PREDICTED: collagen alpha-1(XVI) chain [Pan troglodytes]
Length = 1590
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1455 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGD 1508
>gi|17505428|ref|NP_492035.1| Protein COL-61 [Caenorhabditis elegans]
gi|3873910|emb|CAA95780.1| Protein COL-61 [Caenorhabditis elegans]
Length = 307
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGM---DGIPGKDGLPGKDGIPGTNGT 75
G G GRDGLPGEPG +G PG G DG PG+ G PG G+PG G+
Sbjct: 152 GLPGYPGRDGLPGEPGPNGKPGNPGYRGEDGKPGRPGEPGSSGLPGRPGS 201
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
G G DG+ G PGEPG G+PGR G D GK GLPG+DG
Sbjct: 176 GYRGEDGKPGRPGEPGSSGLPGRPGSD---GKPGLPGRDG 212
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGI--PGRNGMDGIPGKDGLPGKDGIPGTNG 74
G S+ + GR G DG+ GLPG G GI PGR G G GK+G PG +G PG G
Sbjct: 188 GEPGSSGLPGRPGSDGKPGLPGRDGKKGIGLPGRMGRPGFAGKEGQPGINGKPGRMG 244
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDG-----IPGKDGLP---GKDGIPGTNG 74
GR G G GLPG PG DG PG G DG +PG+ G P GK+G PG NG
Sbjct: 185 GRPGEPGSSGLPGRPGSDGKPGLPGRDGKKGIGLPGRMGRPGFAGKEGQPGING 238
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR G G++G PG +PG G+PG G +G PG G+ G+DGIPG G
Sbjct: 223 GRPGFAGKEGQPGINGKPGRMGLPGPAGPEGKPGYPGMLGRDGIPGEPG 271
>gi|344287165|ref|XP_003415325.1| PREDICTED: collagen alpha-1(XVI) chain [Loxodonta africana]
Length = 1593
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1458 AAAPGRPGPPGKDGSPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGD 1511
>gi|313227207|emb|CBY22354.1| unnamed protein product [Oikopleura dioica]
Length = 518
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 15/63 (23%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---------------DGIPG 71
+ G+ GLDG+ GLPGE GL G G G+DG+ G+DGLPG+ +G+PG
Sbjct: 238 LHGQAGLDGKPGLPGEQGLKGAIGAEGLDGLDGQDGLPGERGPRGDIGPPGKPGANGMPG 297
Query: 72 TNG 74
NG
Sbjct: 298 ANG 300
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 32 GLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GLDG+DGLPGE G G PG+ G +G+PG +G+ GK G G G D
Sbjct: 267 GLDGQDGLPGERGPRGDIGPPGKPGANGMPGANGINGKPGERGGQGPMGDS 317
>gi|201023273|ref|NP_001015033.2| collagen, type XVI, alpha 1 precursor [Rattus norvegicus]
Length = 1618
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1483 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGD 1536
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 37 DGLPGEPGLDGIPGRNGM--DGIPGKDGLPGKDGIPGTNGTKTD 78
GLPG+PG G PG G+ G PG+ GLPG G PG GT+ +
Sbjct: 744 SGLPGKPGPKGEPGPEGVGRPGKPGQPGLPGVQGPPGLKGTQGE 787
>gi|444707357|gb|ELW48639.1| Collagen alpha-1(XVI) chain [Tupaia chinensis]
Length = 1773
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 30/53 (56%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G++G PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1642 AAPGRPGPPGKEGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGD 1694
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G GL G G G PG G+ G G DG PG+ GLPG GIPG G++ +
Sbjct: 870 VQGPPGLKGATGPVGPPGA-GLSGPPGHDGQPGEAGLPGSRGIPGEKGSRGEK 921
>gi|426328834|ref|XP_004025453.1| PREDICTED: collagen alpha-1(XVI) chain-like [Gorilla gorilla gorilla]
Length = 1203
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1068 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGD 1121
>gi|293345739|ref|XP_002726101.1| PREDICTED: collagen alpha-1(XXIV) chain-like [Rattus norvegicus]
Length = 1752
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
SG+ G+ G GLPG GL G G +G+ G PGK GL GK G+PGT G+
Sbjct: 1313 SGKPGIPGLPGLPGPKGLQGYHGVDGLSGYPGKPGLLGKQGLPGTTGS 1360
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTKTD 78
G +G G +G GEPG G PG G +G+ GKDGL PG G+PG +G K +
Sbjct: 1067 GDVGPTGSEGATGEPGPRGEPGAPGEEGLQGKDGLKGAPGGSGLPGEDGEKGE 1119
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+G S +G G G G PGE GL DG+ G G G+PG+DG G+ G+PGT G
Sbjct: 1068 DVGPTGSEGATGEPGPRGEPGAPGEEGLQGKDGLKGAPGGSGLPGEDGEKGEMGLPGTAG 1127
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GL G GLPG E G+ G+ G G G PG+ GL G +G PG+ G +
Sbjct: 603 LQGEKGLKGHTGLPGLRGEQGIPGLAGNVGSPGYPGRQGLAGPEGNPGSKGVR 655
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 9/60 (15%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNG---------MDGIPGKDGLPGKDGIPGTNGTKTD 78
+G+ G G G+ G+PGL G+PG +G G+PG GLPG+ G+ G GT+ D
Sbjct: 997 AGKTGSPGERGVQGKPGLQGLPGSSGDMGPAGEPGPRGLPGDAGLPGEMGVEGPPGTEGD 1056
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 12/60 (20%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGI------------PGKDGLPGKDGIPGTNGTK 76
G GL G+DGL G PG G+PG +G G PG+ G PG +GI GT G +
Sbjct: 1091 GEEGLQGKDGLKGAPGGSGLPGEDGEKGEMGLPGTAGPVGRPGQMGPPGSEGIVGTPGER 1150
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G G G GL GE G +G G+ G+ G GK G+PG G+PG G + H
Sbjct: 1284 GEPGDQGEQGLKGERGSEGPQGKKGVPGPSGKPGIPGLPGLPGPKGLQGYH 1334
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 22/40 (55%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
G G G+ GLPG G G PG G+ G PG GLPG G
Sbjct: 983 GEKGNQGKRGLPGRAGKTGSPGERGVQGKPGLQGLPGSSG 1022
>gi|402578748|gb|EJW72701.1| hypothetical protein WUBG_16390, partial [Wuchereria bancrofti]
Length = 322
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 29/46 (63%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G DG GLPG G DG PG G G+ G G+PGKDGIPG G +
Sbjct: 30 VGRDGAPGLPGPAGKDGYPGAKGERGLSGFPGIPGKDGIPGYLGER 75
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+SG G+ G+DG+PG G GI G G+ G PG GLPG G+PG G + D
Sbjct: 56 LSGFPGIPGKDGIPGYLGERGISGVPGVPGYPGNVGLPGLPGMPGQKGIRGD 107
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 7 MLQVLEVH-DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG 65
L +L + R +GR + + G G DG G GE GL G PG G DGIPG G G
Sbjct: 17 FLSLLHSYFTRHVVGRDGAPGLPGPAGKDGYPGAKGERGLSGFPGIPGKDGIPGYLGERG 76
Query: 66 KDGIPGTNG 74
G+PG G
Sbjct: 77 ISGVPGVPG 85
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPG---RNGMDGIPGKDGLPGKDGIPGTNG 74
G G G G PG PG DGIPG G+ G+PG G PG G+PG G
Sbjct: 49 GAKGERGLSGFPGIPGKDGIPGYLGERGISGVPGVPGYPGNVGLPGLPG 97
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I G +G G G+PG PG G G G+ G+PG+ G+ G DG+PG G +
Sbjct: 68 IPGYLGERGISGVPGVPGYPGNVGLPGLPGMPGQKGIRGDDGLPGVPGLQ 117
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
G+ G G PG GL G+PG G GI G DGLPG G+ G+
Sbjct: 79 GVPGVPGYPGNVGLPGLPGMPGQKGIRGDDGLPGVPGLQGS 119
>gi|194207774|ref|XP_001917441.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(XVI) chain [Equus
caballus]
Length = 1618
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 30/53 (56%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1484 AAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGD 1536
>gi|296481578|tpg|DAA23693.1| TPA: collagen alpha-1(IV) chain [Bos taurus]
Length = 1669
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 36/65 (55%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ G T SG GL G+ G PG+PG+ G G G+ G PG+ G PG G+PG G
Sbjct: 844 DKGSQGLPGLTGQSGLPGLPGQQGTPGQPGIPGPKGEMGVMGTPGQPGSPGPAGVPGLPG 903
Query: 75 TKTDH 79
K DH
Sbjct: 904 AKGDH 908
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G +G G GLPGE G G+PG +G+ GI G+ GLPGK G G G K +
Sbjct: 1103 GSVGYPGSPGLPGEKGDKGLPGLDGIPGIKGEAGLPGKPGPTGPAGQKGE---------P 1153
Query: 89 FSDGVLPSVQRAIAAGLVIYRF 110
SDG+ SV +GL F
Sbjct: 1154 GSDGIPGSVGEKGESGLPGRGF 1175
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 39 LPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
PG+PG G +PGR+G++G+PG G PG G PG G + Y
Sbjct: 490 FPGQPGAKGDRGLPGRDGLEGLPGPQGAPGLMGQPGAKGEPGEIY 534
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E D+ + G+ T G G G G+PG+ G G PG+ G G PG G+PG G+PG
Sbjct: 949 EKGDQGEKGQTGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGVSGIPGAPGLPG 1008
Query: 72 TNGT 75
G+
Sbjct: 1009 PKGS 1012
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDG----LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIP 70
D+ IG + G+ G G G LPG PG +G+PG G G G G PG G P
Sbjct: 616 DKGQIGFPGTPGAPGQPGPKGEAGKVVPLPGPPGAEGLPGSPGFQGPQGDRGFPGSPGRP 675
Query: 71 GTNGTK 76
G G K
Sbjct: 676 GLPGEK 681
>gi|262073079|ref|NP_001159983.1| collagen alpha-1(IV) chain precursor [Bos taurus]
Length = 1669
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 36/65 (55%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ G T SG GL G+ G PG+PG+ G G G+ G PG+ G PG G+PG G
Sbjct: 844 DKGSQGLPGLTGQSGLPGLPGQQGTPGQPGIPGPKGEMGVMGTPGQPGSPGPAGVPGLPG 903
Query: 75 TKTDH 79
K DH
Sbjct: 904 AKGDH 908
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G +G G GLPGE G G+PG +G+ GI G+ GLPGK G G G K +
Sbjct: 1103 GSVGYPGSPGLPGEKGDKGLPGLDGIPGIKGEAGLPGKPGPTGPAGQKGE---------P 1153
Query: 89 FSDGVLPSVQRAIAAGLVIYRF 110
SDG+ SV +GL F
Sbjct: 1154 GSDGIPGSVGEKGESGLPGRGF 1175
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 39 LPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
PG+PG G +PGR+G++G+PG G PG G PG G + Y
Sbjct: 490 FPGQPGAKGDRGLPGRDGLEGLPGPQGAPGLMGQPGAKGEPGEIY 534
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E D+ + G+ T G G G G+PG+ G G PG+ G G PG G+PG G+PG
Sbjct: 949 EKGDQGEKGQTGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGVSGIPGAPGLPG 1008
Query: 72 TNGT 75
G+
Sbjct: 1009 PKGS 1012
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDG----LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIP 70
D+ IG + G+ G G G LPG PG +G+PG G G G G PG G P
Sbjct: 616 DKGQIGFPGTPGAPGQPGPKGEAGKVVPLPGPPGAEGLPGSPGFQGPQGDRGFPGSPGRP 675
Query: 71 GTNGTK 76
G G K
Sbjct: 676 GLPGEK 681
>gi|440898342|gb|ELR49862.1| Collagen alpha-1(IV) chain, partial [Bos grunniens mutus]
Length = 1642
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 36/65 (55%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ G T SG GL G+ G PG+PG+ G G G+ G PG+ G PG G+PG G
Sbjct: 817 DKGSQGLPGLTGQSGLPGLPGQQGTPGQPGIPGPKGEMGVMGTPGQPGSPGPAGVPGLPG 876
Query: 75 TKTDH 79
K DH
Sbjct: 877 AKGDH 881
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G +G G GLPGE G G+PG +G+ GI G+ GLPGK G G G K +
Sbjct: 1076 GSVGYPGSPGLPGEKGDKGLPGLDGIPGIKGEAGLPGKPGPTGPAGQKGE---------P 1126
Query: 89 FSDGVLPSVQRAIAAGLVIYRF 110
SDG+ SV +GL F
Sbjct: 1127 GSDGIPGSVGEKGESGLPGRGF 1148
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 39 LPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
PG+PG G +PGR+G++G+PG G PG G PG G + Y
Sbjct: 463 FPGQPGAKGDRGLPGRDGLEGLPGPQGAPGLMGQPGAKGEPGEIY 507
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDG----LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIP 70
D+ IG + G+ G G G LPG PG +G+PG G G G G PG G P
Sbjct: 589 DKGQIGFPGTPGAPGQPGPKGEAGKVVPLPGPPGAEGLPGSPGFQGPQGDRGFPGSPGRP 648
Query: 71 GTNGTK 76
G G K
Sbjct: 649 GLPGEK 654
>gi|313235811|emb|CBY19795.1| unnamed protein product [Oikopleura dioica]
Length = 1120
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGKDGIPGTNG 74
G DG DGLPG+ G DG PGR+G + G+PGK G PGK IPG G
Sbjct: 632 GRDGADGLPGQAGRDGKPGRDGPAGLKGLPGKQGEPGK-CIPGQKG 676
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G DG G G G DG+PG+ G DG PG+DG G G+PG G
Sbjct: 620 GQRGNDGAPGPDGRDGADGLPGQAGRDGKPGRDGPAGLKGLPGKQG 665
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 28/57 (49%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G G G PGE G DG PG G G+PG G G+ G G GTK + G D
Sbjct: 676 GPCGKKGEAGTPGEDGFDGHPGNPGKPGLPGPVGSVGRPGNEGPKGTKGEQGIQGPD 732
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 25/48 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G G G PG+ G PG G G G+ GLPG DG G NG K
Sbjct: 742 GEPGSPGNKGQKGSPGIQGRPGLQGPQGPIGEPGLPGADGKKGANGQK 789
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G DG+ G G PG DG G +G+ G G+DG PG+DG G G
Sbjct: 614 GPVGPDGQRGNDGAPGPDGRDGADGLPGQAGRDGKPGRDGPAGLKG 659
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDG--IPGKDGLPGKDGIPGTNG 74
+ G+ G DG+ G G GL G+PG+ G G IPG+ G GK G GT G
Sbjct: 639 LPGQAGRDGKPGRDGPAGLKGLPGKQGEPGKCIPGQKGPCGKKGEAGTPG 688
>gi|62088722|dbj|BAD92808.1| alpha 1 type XVI collagen precursor variant [Homo sapiens]
Length = 1463
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1328 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGD 1381
>gi|355680403|gb|AER96532.1| collagen, type XVI, alpha 1 [Mustela putorius furo]
Length = 503
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 31/54 (57%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ GR G G+DG PG PG G PG G G G+ G+PG G+PGT G K D
Sbjct: 368 AAVPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGVPGMRGLPGTKGEKGD 421
>gi|393910693|gb|EJD75998.1| collagen alpha-1(IV) chain [Loa loa]
Length = 1743
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 34/53 (64%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G G DG GLPG PG+DG+PGR G GI G G PG+ GIPG +G D+
Sbjct: 721 LKGTRGADGLPGLPGAPGIDGLPGRVGEPGIIGYPGKPGESGIPGLSGLLGDN 773
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+IG + G+ G G++GLPG E G G+PG G G PGK G PG+DG+PG G
Sbjct: 882 EIGTPGIPGVKGKSGAPGKNGLPGIKGEAGFPGLPGLPGKVGTPGKPGSPGEDGVPGYPG 941
Query: 75 TKTDH 79
K +
Sbjct: 942 MKGER 946
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
+ + G T I+G G+ G DGLP GE G+ GIPG+ G DG G G GKDG PG
Sbjct: 1277 KGEFGEGGRTGIAGAPGMRGTDGLPGYHGEKGIPGIPGKRGRDGAHGSPGPAGKDGSPGA 1336
Query: 73 NGTK 76
G +
Sbjct: 1337 KGER 1340
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 6 GMLQVLEVHDRRDI-GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP 64
G++ + + R + G T GR G G G+PG G G PG+NG+ GI G+ G P
Sbjct: 854 GLVGIPGIKGERGLSGIPGKTGRPGRAGEIGTPGIPGVKGKSGAPGKNGLPGIKGEAGFP 913
Query: 65 GKDGIPGTNGTKTDHYAMGAD 85
G G+PG GT + G D
Sbjct: 914 GLPGLPGKVGTPGKPGSPGED 934
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+SG G+ G+DG+PG G G+PG +G+ G PG GL G GIPG G D
Sbjct: 1342 LSGLPGIPGKDGIPGYLGEQGVPGISGVPGYPGNVGLSGLPGIPGQKGAHGD 1393
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I G+ G DG G PG G DG PG G G+ G G+PGKDGIPG G +
Sbjct: 1312 IPGKRGRDGAHGSPGPAGKDGSPGAKGERGLSGLPGIPGKDGIPGYLGEQ 1361
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 30/51 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GR G+DG DG PG PG+ G PGR G G G+ G G DG PG G K +
Sbjct: 1069 GRDGIDGTDGFPGLPGMIGYPGRKGEQGDVGRSGGRGFDGQPGVPGVKGER 1119
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 18/66 (27%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD------------------GLPGKDG 68
+ G GL+G GL G PGL G+PG GM G PG+ GLPG+DG
Sbjct: 981 LPGASGLEGLPGLSGAPGLTGLPGIKGMPGEPGRFAHPGSPGDVGLPGPQGPVGLPGQDG 1040
Query: 69 IPGTNG 74
IPGT G
Sbjct: 1041 IPGTKG 1046
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+SG++GL G +PG+ GLDG+PG G+DG PG G G +G+PG +G
Sbjct: 951 VSGQLGLSG---IPGDRGLDGLPGLQGVDGEPGLPGASGLEGLPGLSGA 996
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ D G G +G +G GLPG G+ G PGR G DG G +GLPG G PG G
Sbjct: 547 QKGDAGLPGQEGYPGPVGPNGNQGLPGIKGVAGKPGRVGSDGQQGSEGLPGLPGYPGMKG 606
Query: 75 TKTD 78
+
Sbjct: 607 EAGE 610
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
T ++G G+ G +G PG G+ GI G G+ GIPGK G PG+ G GT G GA
Sbjct: 838 TGVAGARGVKGENGYPGLVGIPGIKGERGLSGIPGKTGRPGRAGEIGTPGIPGVKGKSGA 897
Query: 85 DTKSFSDGV 93
K+ G+
Sbjct: 898 PGKNGLPGI 906
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G+DG GLPG GL+G+PG + G PG GLPG G+PG G
Sbjct: 969 LPGLQGVDGEPGLPGASGLEGLPG---LSGAPGLTGLPGIKGMPGEPG 1013
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 12/79 (15%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKD---G 68
++ D+GR SG G DG+ G+P GE GL G+PG G+ G PG DG G+ G
Sbjct: 1094 EQGDVGR------SGGRGFDGQPGVPGVKGERGLPGLPGVPGLQGPPGPDGTLGQKGHAG 1147
Query: 69 IPGTNGTKTDHYAMGADTK 87
+PG G K GAD +
Sbjct: 1148 LPGEPGLKGQRGQSGADGR 1166
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 19 IGRAISTVISGRIGLDGRDGLPG-----EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
+G A + G G+ G GLPG PGL+G PGR+G G+PG G PG G+ G
Sbjct: 434 VGDAGAPGTPGDCGITGEPGLPGFDIQGPPGLEGRPGRDGFTGVPGDVGDPGLAGLKGFP 493
Query: 74 GT 75
GT
Sbjct: 494 GT 495
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
ISG G G DGLPG GLDG PG G G+ G +G G+DG PG +G
Sbjct: 614 ISGGRGNPGLDGLPGPSGLDGAPGLLGEKGLAGINGKHGRDGAPGLSGA 662
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK------DGIPGTNGTKTDH 79
G G G GLPG PG DGIPG G G+PG G+PG G+PG G K H
Sbjct: 1335 GAKGERGLSGLPGIPGKDGIPGYLGEQGVPGISGVPGYPGNVGLSGLPGIPGQKGAH 1391
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G+DG G GEPG+ G PG+ G GIPG GL G +G PG G
Sbjct: 733 LPGAPGIDGLPGRVGEPGIIGYPGKPGESGIPGLSGLLGDNGYPGVPG 780
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 29/48 (60%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
S +I G +G DG DG PG G G G G+ G PG DGLPG+ G PG
Sbjct: 703 SGLIRGLVGRDGYDGAPGLKGTRGADGLPGLPGAPGIDGLPGRVGEPG 750
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 15/63 (23%)
Query: 29 GRIGLDGRDGLPGEPG---------------LDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
G+ G G DG+PG PG L GIPG G+DG+PG G+ G+ G+PG +
Sbjct: 926 GKPGSPGEDGVPGYPGMKGERGVDGVSGQLGLSGIPGDRGLDGLPGLQGVDGEPGLPGAS 985
Query: 74 GTK 76
G +
Sbjct: 986 GLE 988
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 15/81 (18%)
Query: 28 SGRIGLDG---RDGLPGEPGLD------GIPGRNGMDGIPGKDGLPG------KDGIPGT 72
+GRIGLDG G PGE G D G PG+ G G+PG++G PG G+PG
Sbjct: 515 NGRIGLDGIPGGTGYPGEKGDDCGYCAPGTPGQKGDAGLPGQEGYPGPVGPNGNQGLPGI 574
Query: 73 NGTKTDHYAMGADTKSFSDGV 93
G +G+D + S+G+
Sbjct: 575 KGVAGKPGRVGSDGQQGSEGL 595
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
+SG G GR G GE G GIPG G G PGK+GLP G+ G PG G G
Sbjct: 867 LSGIPGKTGRPGRAGEIGTPGIPGVKGKSGAPGKNGLPGIKGEAGFPGLPGLPGKVGTPG 926
Query: 84 ADTKSFSDGV 93
DGV
Sbjct: 927 KPGSPGEDGV 936
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIP------GRNGMDGIPGKDGLPGKDGIPGTNG 74
+ GR+G G G PG+PG GIP G NG G+PG+ GL G G PG +G
Sbjct: 742 LPGRVGEPGIIGYPGKPGESGIPGLSGLLGDNGYPGVPGEIGLSGVGGFPGLSG 795
Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKDGIPGTNGT 75
G G DG G GE GL G+PG G DGIP G+ G+PG G+PG G
Sbjct: 1326 GPAGKDGSPGAKGERGLSGLPGIPGKDGIPGYLGEQGVPGISGVPGYPGN 1375
>gi|350585813|ref|XP_003127801.2| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(XVI) chain-like [Sus
scrofa]
Length = 1618
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 30/53 (56%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1484 AAPGRPGPPGKDGAPGRPGSPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGD 1536
>gi|297671963|ref|XP_002814093.1| PREDICTED: collagen alpha-6(VI) chain [Pongo abelii]
Length = 2291
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 28/49 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G +G G DGL GE G +G+PGR G G G G PGK G PG G K
Sbjct: 1485 EGEVGETGIDGLNGEQGDNGLPGRKGEKGDEGSQGSPGKRGTPGDRGAK 1533
>gi|336119087|ref|YP_004573861.1| hypothetical protein MLP_34440 [Microlunatus phosphovorus NM-1]
gi|334686873|dbj|BAK36458.1| hypothetical protein MLP_34440 [Microlunatus phosphovorus NM-1]
Length = 522
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G G +G DG G+ G +GI G NG DG PGKDG+ GK G PG +GT
Sbjct: 365 NGTDGTNGTDGTNGKDGTNGIDGTNGKDGQPGKDGVDGKLGQPGKDGTN 413
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGI---PGKDGLPGKDG 68
G G DG +G+ G G DG PG++G+DG PGKDG GKDG
Sbjct: 375 GTNGKDGTNGIDGTNGKDGQPGKDGVDGKLGQPGKDGTNGKDG 417
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+GR G G G G+PG +G G +G +G G +G G +GI GTNG
Sbjct: 344 TGRTGEKGEKGDQGDPGTNGTNGTDGTNGTDGTNGKDGTNGIDGTNG 390
>gi|312086901|ref|XP_003145259.1| hypothetical protein LOAG_09684 [Loa loa]
Length = 1614
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 34/53 (64%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G G DG GLPG PG+DG+PGR G GI G G PG+ GIPG +G D+
Sbjct: 592 LKGTRGADGLPGLPGAPGIDGLPGRVGEPGIIGYPGKPGESGIPGLSGLLGDN 644
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+IG + G+ G G++GLPG E G G+PG G G PGK G PG+DG+PG G
Sbjct: 753 EIGTPGIPGVKGKSGAPGKNGLPGIKGEAGFPGLPGLPGKVGTPGKPGSPGEDGVPGYPG 812
Query: 75 TKTDH 79
K +
Sbjct: 813 MKGER 817
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
+ + G T I+G G+ G DGLP GE G+ GIPG+ G DG G G GKDG PG
Sbjct: 1148 KGEFGEGGRTGIAGAPGMRGTDGLPGYHGEKGIPGIPGKRGRDGAHGSPGPAGKDGSPGA 1207
Query: 73 NGTK 76
G +
Sbjct: 1208 KGER 1211
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 6 GMLQVLEVHDRRDI-GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP 64
G++ + + R + G T GR G G G+PG G G PG+NG+ GI G+ G P
Sbjct: 725 GLVGIPGIKGERGLSGIPGKTGRPGRAGEIGTPGIPGVKGKSGAPGKNGLPGIKGEAGFP 784
Query: 65 GKDGIPGTNGTKTDHYAMGAD 85
G G+PG GT + G D
Sbjct: 785 GLPGLPGKVGTPGKPGSPGED 805
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+SG G+ G+DG+PG G G+PG +G+ G PG GL G GIPG G D
Sbjct: 1213 LSGLPGIPGKDGIPGYLGEQGVPGISGVPGYPGNVGLSGLPGIPGQKGAHGD 1264
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I G+ G DG G PG G DG PG G G+ G G+PGKDGIPG G +
Sbjct: 1183 IPGKRGRDGAHGSPGPAGKDGSPGAKGERGLSGLPGIPGKDGIPGYLGEQ 1232
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 30/51 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GR G+DG DG PG PG+ G PGR G G G+ G G DG PG G K +
Sbjct: 940 GRDGIDGTDGFPGLPGMIGYPGRKGEQGDVGRSGGRGFDGQPGVPGVKGER 990
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 18/66 (27%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD------------------GLPGKDG 68
+ G GL+G GL G PGL G+PG GM G PG+ GLPG+DG
Sbjct: 852 LPGASGLEGLPGLSGAPGLTGLPGIKGMPGEPGRFAHPGSPGDVGLPGPQGPVGLPGQDG 911
Query: 69 IPGTNG 74
IPGT G
Sbjct: 912 IPGTKG 917
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+SG++GL G +PG+ GLDG+PG G+DG PG G G +G+PG +G
Sbjct: 822 VSGQLGLSG---IPGDRGLDGLPGLQGVDGEPGLPGASGLEGLPGLSGA 867
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ D G G +G +G GLPG G+ G PGR G DG G +GLPG G PG G
Sbjct: 418 QKGDAGLPGQEGYPGPVGPNGNQGLPGIKGVAGKPGRVGSDGQQGSEGLPGLPGYPGMKG 477
Query: 75 TKTD 78
+
Sbjct: 478 EAGE 481
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
T ++G G+ G +G PG G+ GI G G+ GIPGK G PG+ G GT G GA
Sbjct: 709 TGVAGARGVKGENGYPGLVGIPGIKGERGLSGIPGKTGRPGRAGEIGTPGIPGVKGKSGA 768
Query: 85 DTKSFSDGV 93
K+ G+
Sbjct: 769 PGKNGLPGI 777
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G+DG GLPG GL+G+PG + G PG GLPG G+PG G
Sbjct: 840 LPGLQGVDGEPGLPGASGLEGLPG---LSGAPGLTGLPGIKGMPGEPG 884
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 12/79 (15%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKD---G 68
++ D+GR SG G DG+ G+P GE GL G+PG G+ G PG DG G+ G
Sbjct: 965 EQGDVGR------SGGRGFDGQPGVPGVKGERGLPGLPGVPGLQGPPGPDGTLGQKGHAG 1018
Query: 69 IPGTNGTKTDHYAMGADTK 87
+PG G K GAD +
Sbjct: 1019 LPGEPGLKGQRGQSGADGR 1037
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 19 IGRAISTVISGRIGLDGRDGLPG-----EPGLDGIPGRNGMDGIP---GKDGLPGKDGIP 70
+G A + G G+ G GLPG PGL+G PGR+G G+P G GL G G P
Sbjct: 305 VGDAGAPGTPGDCGITGEPGLPGFDIQGPPGLEGRPGRDGFTGVPGDVGDPGLAGLKGFP 364
Query: 71 GTNGTKTDHYAM 82
GT +K M
Sbjct: 365 GTGVSKVGPPGM 376
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
ISG G G DGLPG GLDG PG G G+ G +G G+DG PG +G
Sbjct: 485 ISGGRGNPGLDGLPGPSGLDGAPGLLGEKGLAGINGKHGRDGAPGLSGA 533
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK------DGIPGTNGTKTDH 79
G G G GLPG PG DGIPG G G+PG G+PG G+PG G K H
Sbjct: 1206 GAKGERGLSGLPGIPGKDGIPGYLGEQGVPGISGVPGYPGNVGLSGLPGIPGQKGAH 1262
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G+DG G GEPG+ G PG+ G GIPG GL G +G PG G
Sbjct: 604 LPGAPGIDGLPGRVGEPGIIGYPGKPGESGIPGLSGLLGDNGYPGVPG 651
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 29/48 (60%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
S +I G +G DG DG PG G G G G+ G PG DGLPG+ G PG
Sbjct: 574 SGLIRGLVGRDGYDGAPGLKGTRGADGLPGLPGAPGIDGLPGRVGEPG 621
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 15/63 (23%)
Query: 29 GRIGLDGRDGLPGEPG---------------LDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
G+ G G DG+PG PG L GIPG G+DG+PG G+ G+ G+PG +
Sbjct: 797 GKPGSPGEDGVPGYPGMKGERGVDGVSGQLGLSGIPGDRGLDGLPGLQGVDGEPGLPGAS 856
Query: 74 GTK 76
G +
Sbjct: 857 GLE 859
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 15/81 (18%)
Query: 28 SGRIGLDG---RDGLPGEPGLD------GIPGRNGMDGIPGKDGLPG------KDGIPGT 72
+GRIGLDG G PGE G D G PG+ G G+PG++G PG G+PG
Sbjct: 386 NGRIGLDGIPGGTGYPGEKGDDCGYCAPGTPGQKGDAGLPGQEGYPGPVGPNGNQGLPGI 445
Query: 73 NGTKTDHYAMGADTKSFSDGV 93
G +G+D + S+G+
Sbjct: 446 KGVAGKPGRVGSDGQQGSEGL 466
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
+SG G GR G GE G GIPG G G PGK+GLP G+ G PG G G
Sbjct: 738 LSGIPGKTGRPGRAGEIGTPGIPGVKGKSGAPGKNGLPGIKGEAGFPGLPGLPGKVGTPG 797
Query: 84 ADTKSFSDGV 93
DGV
Sbjct: 798 KPGSPGEDGV 807
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIP------GRNGMDGIPGKDGLPGKDGIPGTNG 74
+ GR+G G G PG+PG GIP G NG G+PG+ GL G G PG +G
Sbjct: 613 LPGRVGEPGIIGYPGKPGESGIPGLSGLLGDNGYPGVPGEIGLSGVGGFPGLSG 666
>gi|395851182|ref|XP_003798145.1| PREDICTED: collagen alpha-1(XVIII) chain isoform 2 [Otolemur
garnettii]
Length = 1745
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 34/67 (50%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G G PG PGL G G G DG PG GLPG++G G G K D + G
Sbjct: 1040 LQGLPGLPGLKGDPGTPGLPGAKGEVGADGAPGFPGLPGREGSTGPQGPKGDRGSQGEKG 1099
Query: 87 KSFSDGV 93
DGV
Sbjct: 1100 DRGQDGV 1106
>gi|308486402|ref|XP_003105398.1| CRE-COL-138 protein [Caenorhabditis remanei]
gi|308256503|gb|EFP00456.1| CRE-COL-138 protein [Caenorhabditis remanei]
Length = 281
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK--TDHY 80
G G DGR G PG G G G+NG DG PGKDG G+ G PG +G K DH
Sbjct: 219 GEAGQDGRPGQPGRQGPQGEAGQNGKDGEPGKDGEDGEPGKPGEDGPKGSCDHC 272
>gi|395545673|ref|XP_003774723.1| PREDICTED: collagen alpha-5(IV) chain [Sarcophilus harrisii]
Length = 1672
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 28/43 (65%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G G PGEPG G PGR+G G+PG GLPG G+PG G
Sbjct: 273 GVKGEKGWPGEPGQKGKPGRDGASGLPGMQGLPGDPGVPGKPG 315
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G S G G G+ GLPG PG+ G+PG GMDG G G+PG+ G G+ G
Sbjct: 1087 LGDTGSPGAPGSPGAKGQPGLPGRPGITGLPGPRGMDGPSGSPGIPGQSGPVGSQGHPGP 1146
Query: 79 HYAMGADTKSFSDGV 93
+ G K DG+
Sbjct: 1147 PGSPGEKGKPGQDGI 1161
>gi|296198462|ref|XP_002746713.1| PREDICTED: collagen alpha-1(XXI) chain isoform 1 [Callithrix
jacchus]
Length = 957
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + I G+ GL G G PG PG G PG+ G DG PG G+ G G+PGT G
Sbjct: 436 DVGSTPAPCICPPGKPGLQGPKGDPGLPGNPGYPGQPGQDGKPGHQGIAGTPGVPGTQGI 495
Query: 76 K 76
+
Sbjct: 496 Q 496
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 28/51 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G G G+DG PG G+ G PG G GI G GLPG G PG +G K D
Sbjct: 467 GYPGQPGQDGKPGHQGIAGTPGVPGTQGIQGARGLPGYKGEPGRDGNKGDR 517
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 29 GRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G G G+ G PG PGL +G PG+ GM G G G PG G+PG +G K + AMG
Sbjct: 623 GPPGQQGKKGAPGIPGLMGTNGSPGQPGMPGSKGSKGEPGIQGMPGASGLKGEPGAMGT 681
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPG---------RNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
SG G G G PGEPG G+PG G GI G+ G G+ GIPGT G +
Sbjct: 670 SGLKGEPGAMGTPGEPGYMGLPGIQGKQGDKGNQGEKGIQGQKGENGRQGIPGTQGIQGH 729
Query: 79 HYAMG 83
H A G
Sbjct: 730 HGAKG 734
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G+ G GLPG EPG DG G G+ G PG G+PG G GT G K
Sbjct: 489 VPGTQGIQGARGLPGYKGEPGRDGNKGDRGLPGFPGLHGMPGSKGDMGTKGDK 541
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G+ G PG G+ GIPG++G G G
Sbjct: 846 GLPGRDGVPGLMGVPGRPGVRGLKGIPGRNGEKGSQGF 883
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G A S G+ G G G+PG PG G+ G+ G G PG+ G G GIPG GT
Sbjct: 587 GEAGSPGAPGQDGPRGEPGIPGFPGSQGLMGQKGEIGPPGQQGKKGAPGIPGLMGT 642
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 27 ISGRIGLDGRDGLP------GEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTKT 77
+ G G G+ G+P GEPG+ G+PG +G+ G PG G PG+ G+PG G +
Sbjct: 639 LMGTNGSPGQPGMPGSKGSKGEPGIQGMPGASGLKGEPGAMGTPGEPGYMGLPGIQGKQG 698
Query: 78 DH 79
D
Sbjct: 699 DK 700
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
PG PG DG+P G+ G+PG+ G+ G GIPG NG K
Sbjct: 844 FPGLPGRDGVP---GLMGVPGRPGVRGLKGIPGRNGEK 878
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G +G +G G PG PG G G G+ G+PG GL G+ G GT G
Sbjct: 636 IPGLMGTNGSPGQPGMPGSKGSKGEPGIQGMPGASGLKGEPGAMGTPG 683
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G+ G G PG G G G+ G+ G +G PG+ G+PG+ G+K
Sbjct: 609 FPGSQGLMGQKGEIGPPGQQGKKGAPGIPGLMGTNGSPGQPGMPGSKGSK 658
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGM---------DGIPGKDGLPGKDGIPGTNGT 75
+G G G+DG GEPG+ G PG G+ G GK G PG G+ GTNG+
Sbjct: 589 AGSPGAPGQDGPRGEPGIPGFPGSQGLMGQKGEIGPPGQQGKKGAPGIPGLMGTNGS 645
>gi|148698202|gb|EDL30149.1| procollagen, type XVI, alpha 1, isoform CRA_b [Mus musculus]
Length = 777
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 642 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGD 695
>gi|307213363|gb|EFN88815.1| Structural maintenance of chromosomes protein 1A [Harpegnathos
saltator]
Length = 2587
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 29/48 (60%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G G +G GLPG PGL G G G+ G+PGKDG PG G PG G+
Sbjct: 2235 KGHRGFNGLQGLPGSPGLPGEKGMPGLPGLPGKDGEPGIRGSPGREGS 2282
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+G GL G GLPGE G+ G+PG G DG PG G PG++G PG
Sbjct: 2240 FNGLQGLPGSPGLPGEKGMPGLPGLPGKDGEPGIRGSPGREGSPG 2284
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ GR G G+ G PGE G+ G G++G G PG GLPG G PG G
Sbjct: 1666 LMGRPGAPGKPGNPGERGIQGADGKSGEQGSPGLQGLPGPLGAPGERG 1713
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIP------GRNGMDGIPGKDGLPGKDGIPGTNG 74
SG GL G G PGE GL G+P G G+ G PG+ G PGK G G +G
Sbjct: 2070 SGPAGLQGPQGTPGERGLPGLPGSPGPIGNRGLRGAPGETGQPGKPGSEGPSG 2122
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GL G G+PG PGL G G G+ G PG++G PG G+ G G +
Sbjct: 2246 LPGSPGLPGEKGMPGLPGLPGKDGEPGIRGSPGREGSPGPIGLIGNPGLR 2295
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 24/43 (55%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GL G G PG GL G+PG G G PG G G G+PG+ G
Sbjct: 1933 GLQGSQGFPGPQGLIGLPGLKGDRGYPGLKGEQGSSGLPGSPG 1975
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 28 SGRIGLDGRDGLPGEPGL---------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G G G+DG+PGE G+ G PG G GI G G+PG GIPG G +
Sbjct: 1508 TGSQGPQGKDGVPGEKGMAGAAGPAGVPGFPGTRGQPGIAGNPGVPGAKGIPGLPGER 1565
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGR---NGMDGIPGKDGLPGKDGIPGTNG 74
+G GL+G G GE G G G NG+ G+PG GLPG+ G+PG G
Sbjct: 2214 AGPPGLEGAKGDHGEEGQKGAKGHRGFNGLQGLPGSPGLPGEKGMPGLPG 2263
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
T ++G G+ G G GEPGL G PG G G G G G G+PGT+G K
Sbjct: 1983 TGLTGTKGIRGEPGARGEPGLMGPPGVTGQVGPAGPPGNVGSPGVPGTSGIK 2034
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGM---DGIPGKDGLPGKDGIPGTNGT 75
G G G G G GL G+PG G+ G+PG GLPGKDG PG G+
Sbjct: 2227 GEEGQKGAKGHRGFNGLQGLPGSPGLPGEKGMPGLPGLPGKDGEPGIRGS 2276
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 21/78 (26%)
Query: 28 SGRIGLDGRDGLPGEPGLDGI---------------------PGRNGMDGIPGKDGLPGK 66
SG G+ G GLPG PG DG+ PG G+ G+ G G PG
Sbjct: 1340 SGPPGVSGPRGLPGLPGKDGVSGEDGETGPPGSPGPVGPRGLPGMPGLTGMKGHRGFPGL 1399
Query: 67 DGIPGTNGTKTDHYAMGA 84
DG G GT + +MGA
Sbjct: 1400 DGAKGEQGTTGEKGSMGA 1417
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G PGE G G PG +G G+PG LPGKDG+ G +G
Sbjct: 1327 FQGTRGEPGESGTSGPPGVSGPRGLPG---LPGKDGVSGEDG 1365
>gi|13235584|emb|CAC33775.1| SclB protein [Streptococcus pyogenes]
Length = 381
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 3/47 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ G DG+DGLPG+ DG G++G DG GKDGLPGKDG G +G
Sbjct: 230 AGKDGQDGKDGLPGK---DGKDGQDGKDGQNGKDGLPGKDGKDGQDG 273
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 37/72 (51%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DR +G A G+ GL G+DG G+ G DG G++G+ G GKDG GK G PG
Sbjct: 223 DRGPVGPAGKDGQDGKDGLPGKDGKDGQDGKDGQNGKDGLPGKDGKDGQDGKAGQPGKPA 282
Query: 75 TKTDHYAMGADT 86
KT DT
Sbjct: 283 PKTPEVPQKPDT 294
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E + D G A G +G G+DG + G DG+PG++G DG GKDG GKDG+PG
Sbjct: 208 ETGAKGDQGPAGKDGDRGPVGPAGKDG---QDGKDGLPGKDGKDGQDGKDGQNGKDGLPG 264
Query: 72 TNG 74
+G
Sbjct: 265 KDG 267
>gi|256016533|emb|CAR63562.1| putative COLlagen [Angiostrongylus cantonensis]
Length = 296
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
G+IG G+DG PG PG G PG G G G DG PG G+PG G K HY
Sbjct: 229 GKIGSRGKDGQPGPPGRTGAPGHPGSPGNKGIDGQPGSKGLPGRPG-KDSHYC 280
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 27 ISGRIGLDGRDGLPG------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G+ GLDGR GLPG +PGL G+PG G G G G PG+ GI G G+
Sbjct: 159 MPGQRGLDGRPGLPGNRGSNGKPGLPGLPGEPGPAGNRGMGGRPGQPGISGRKGS 213
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 25/40 (62%)
Query: 37 DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G+PG+ GLDG PG G G GK GLPG G PG G +
Sbjct: 157 NGMPGQRGLDGRPGLPGNRGSNGKPGLPGLPGEPGPAGNR 196
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
SG G+ G G GEPG G G++G G PG+ G PG G PG G
Sbjct: 213 SGAPGMPGHLGARGEPGKIGSRGKDGQPGPPGRTGAPGHPGSPGNKG 259
>gi|268534426|ref|XP_002632344.1| C. briggsae CBR-COL-138 protein [Caenorhabditis briggsae]
Length = 282
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK--TDHY 80
G G DGR G PG G G G+NG DG PGKDG G+ G PG +G K DH
Sbjct: 220 GEAGQDGRPGQPGRQGPQGEAGQNGKDGEPGKDGEDGEPGKPGEDGPKGSCDHC 273
>gi|296198464|ref|XP_002746714.1| PREDICTED: collagen alpha-1(XXI) chain isoform 2 [Callithrix
jacchus]
Length = 954
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + I G+ GL G G PG PG G PG+ G DG PG G+ G G+PGT G
Sbjct: 433 DVGSTPAPCICPPGKPGLQGPKGDPGLPGNPGYPGQPGQDGKPGHQGIAGTPGVPGTQGI 492
Query: 76 K 76
+
Sbjct: 493 Q 493
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 28/51 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G G G+DG PG G+ G PG G GI G GLPG G PG +G K D
Sbjct: 464 GYPGQPGQDGKPGHQGIAGTPGVPGTQGIQGARGLPGYKGEPGRDGNKGDR 514
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 29 GRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G G G+ G PG PGL +G PG+ GM G G G PG G+PG +G K + AMG
Sbjct: 620 GPPGQQGKKGAPGIPGLMGTNGSPGQPGMPGSKGSKGEPGIQGMPGASGLKGEPGAMGT 678
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPG---------RNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
SG G G G PGEPG G+PG G GI G+ G G+ GIPGT G +
Sbjct: 667 SGLKGEPGAMGTPGEPGYMGLPGIQGKQGDKGNQGEKGIQGQKGENGRQGIPGTQGIQGH 726
Query: 79 HYAMG 83
H A G
Sbjct: 727 HGAKG 731
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G+ G GLPG EPG DG G G+ G PG G+PG G GT G K
Sbjct: 486 VPGTQGIQGARGLPGYKGEPGRDGNKGDRGLPGFPGLHGMPGSKGDMGTKGDK 538
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G+ G PG G+ GIPG++G G G
Sbjct: 843 GLPGRDGVPGLMGVPGRPGVRGLKGIPGRNGEKGSQGF 880
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G A S G+ G G G+PG PG G+ G+ G G PG+ G G GIPG GT
Sbjct: 584 GEAGSPGAPGQDGPRGEPGIPGFPGSQGLMGQKGEIGPPGQQGKKGAPGIPGLMGT 639
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 27 ISGRIGLDGRDGLP------GEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTKT 77
+ G G G+ G+P GEPG+ G+PG +G+ G PG G PG+ G+PG G +
Sbjct: 636 LMGTNGSPGQPGMPGSKGSKGEPGIQGMPGASGLKGEPGAMGTPGEPGYMGLPGIQGKQG 695
Query: 78 DH 79
D
Sbjct: 696 DK 697
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
PG PG DG+P G+ G+PG+ G+ G GIPG NG K
Sbjct: 841 FPGLPGRDGVP---GLMGVPGRPGVRGLKGIPGRNGEK 875
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G +G +G G PG PG G G G+ G+PG GL G+ G GT G
Sbjct: 633 IPGLMGTNGSPGQPGMPGSKGSKGEPGIQGMPGASGLKGEPGAMGTPG 680
Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G+ G G PG G G G+ G+ G +G PG+ G+PG+ G+K
Sbjct: 606 FPGSQGLMGQKGEIGPPGQQGKKGAPGIPGLMGTNGSPGQPGMPGSKGSK 655
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGM---------DGIPGKDGLPGKDGIPGTNGT 75
+G G G+DG GEPG+ G PG G+ G GK G PG G+ GTNG+
Sbjct: 586 AGSPGAPGQDGPRGEPGIPGFPGSQGLMGQKGEIGPPGQQGKKGAPGIPGLMGTNGS 642
>gi|400286886|ref|ZP_10788918.1| hypothetical protein PPAM21_02342 [Psychrobacter sp. PAMC 21119]
Length = 1225
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 31/55 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G+ G G+DG G G DGI G NG+DG G DG G DGI G NG A+G
Sbjct: 763 GKQGPAGQDGAQGSAGSDGINGTNGIDGQNGVDGTNGVDGINGQNGADGAQGAIG 817
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 12/69 (17%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP------------GKDGLPGKD 67
G A S I+G G+DG++G+ G G+DGI G+NG DG G DGL G D
Sbjct: 775 GSAGSDGINGTNGIDGQNGVDGTNGVDGINGQNGADGAQGAIGPQGPAGQNGTDGLNGAD 834
Query: 68 GIPGTNGTK 76
G G +GT
Sbjct: 835 GTNGADGTN 843
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 12/62 (19%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP------------GKDGLPGKDGIPGTNG 74
I+G G+DG++G+ G G+DGI G+NG DG G DGL G DG G +G
Sbjct: 689 INGTNGIDGQNGVDGTNGVDGINGQNGADGAQGAIGPQGQAGQNGTDGLNGADGTNGADG 748
Query: 75 TK 76
T
Sbjct: 749 TN 750
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+ G +G DGL G G +G G NG+DG G+DG GK G G +G +
Sbjct: 727 GQAGQNGTDGLNGADGTNGADGTNGVDGTNGQDGAQGKQGPAGQDGAQ 774
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+G GL+G DG G G +G+ G NG DG GK G G+DG G+ G+
Sbjct: 732 NGTDGLNGADGTNGADGTNGVDGTNGQDGAQGKQGPAGQDGAQGSAGS 779
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G DG G G G DG G G DGI G +G+ G++G+ GTNG
Sbjct: 752 VDGTNGQDGAQGKQGPAGQDGAQGSAGSDGINGTNGIDGQNGVDGTNG 799
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 42/102 (41%), Gaps = 19/102 (18%)
Query: 1 MGRVQGMLQVLEVHDRRDIGRAISTV------ISGRI-------------GLDGRDGLPG 41
MG Q + D D+G A + V + G+I G G G G
Sbjct: 623 MGVFQAPKYRINNTDYSDVGSAFTAVDGKLTDLQGQITNIALTPGPKGDKGDQGETGAQG 682
Query: 42 EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G DGI G NG+DG G DG G DGI G NG A+G
Sbjct: 683 PAGSDGINGTNGIDGQNGVDGTNGVDGINGQNGADGAQGAIG 724
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGI---------PGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G +G DG+ G+ G DG G+NG DG+ G DG GKDG+ G G
Sbjct: 836 TNGADGTNGVDGINGQNGADGAQGAIGPQGPAGQNGTDGLNGADGTNGKDGVDGAQG 892
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 25/46 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G IG G+ G G GL+G G NG DG G DG G+DG G G
Sbjct: 721 GAIGPQGQAGQNGTDGLNGADGTNGADGTNGVDGTNGQDGAQGKQG 766
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGK------DGLPGKDGIPGTNGTK 76
G DG +G G G+DGI G+NG DG G G G DG+ G +GT
Sbjct: 832 GADGTNGADGTNGVDGINGQNGADGAQGAIGPQGPAGQNGTDGLNGADGTN 882
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 25/46 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G IG G G G GL+G G NG DG+ G G G+DGI G G
Sbjct: 859 GAIGPQGPAGQNGTDGLNGADGTNGKDGVDGAQGPEGQDGIDGAKG 904
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGL---PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I+G+ G DG G G+ G +G G NG DG G DG G DG G +G +
Sbjct: 710 INGQNGADGAQGAIGPQGQAGQNGTDGLNGADGTNGADGTNGVDGTNGQDGAQ 762
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+G GL+G DG G G +G+ G NG +G G G G G G NGT
Sbjct: 825 NGTDGLNGADGTNGADGTNGVDGINGQNGADGAQGAIGPQGPAGQNGT 872
>gi|327260434|ref|XP_003215039.1| PREDICTED: collagen alpha-1(XVIII) chain-like [Anolis carolinensis]
Length = 1850
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 32/64 (50%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D G + + G G +G G PG GL GIPG G G+PG DG PG G PG G
Sbjct: 1115 DMEGSGLPFVSAVPGARGPEGPQGDPGTIGLPGIPGPKGPSGLPGLDGHPGSAGFPGPQG 1174
Query: 75 TKTD 78
K D
Sbjct: 1175 EKGD 1178
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 24/37 (64%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
GL G+DG PG+PG DG PG G G PG G PG+ G
Sbjct: 898 GLPGKDGEPGDPGEDGKPGDVGPQGFPGTPGEPGQKG 934
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 24/43 (55%)
Query: 36 RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+DGLPG+ G G PG +G G G G PG G PG G K D
Sbjct: 896 KDGLPGKDGEPGDPGEDGKPGDVGPQGFPGTPGEPGQKGEKGD 938
>gi|395851180|ref|XP_003798144.1| PREDICTED: collagen alpha-1(XVIII) chain isoform 1 [Otolemur
garnettii]
Length = 1520
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 34/67 (50%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G G PG PGL G G G DG PG GLPG++G G G K D + G
Sbjct: 815 LQGLPGLPGLKGDPGTPGLPGAKGEVGADGAPGFPGLPGREGSTGPQGPKGDRGSQGEKG 874
Query: 87 KSFSDGV 93
DGV
Sbjct: 875 DRGQDGV 881
>gi|154089856|emb|CAO81740.1| collagen type VI alpha 6 [Homo sapiens]
Length = 939
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G +G +G DGL GE G +G+PGR G G G G PGK G PG G K
Sbjct: 133 EGEVGENGIDGLNGEQGDNGLPGRKGEKGDEGSQGSPGKRGTPGDRGAK 181
>gi|47226958|emb|CAG05850.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1438
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 32/56 (57%)
Query: 23 ISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
++ + G GL G G PG PG DG PGR G+ GIPG G P K+GI G G D
Sbjct: 295 LAPGLKGERGLPGVPGSPGRPGQDGEPGRAGIPGIPGPKGEPAKEGIKGERGPSGD 350
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPG 71
D+ IGR G G+ G G G+ G DG PG GM G PG G G+ DGIPG
Sbjct: 888 DKGSIGRTGQPGRPGEKGVSGLPGPEGKRGFDGRPGEGGMQGPPGTPGQKGEAGVDGIPG 947
Query: 72 TNGTKTD 78
++G + D
Sbjct: 948 SSGDRGD 954
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGI---------------PGRNGMDGIPG 59
+R + G+ + G G+ G +G+PG+PGL+GI PG G+ G+PG
Sbjct: 852 ERGEKGQPGFQGLPGEKGVRGFEGMPGKPGLEGIKGDKGSIGRTGQPGRPGEKGVSGLPG 911
Query: 60 KDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
+G G DG PG G + G ++ DG+
Sbjct: 912 PEGKRGFDGRPGEGGMQGPPGTPGQKGEAGVDGI 945
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 20 GRAISTVISGRIGLDGRDGLPGE----PGLDG---IPGRNGMDGIPGKDGLPGKDGIPGT 72
GR S I G +G G G PG+ PGL G +PG G G PG+DG PG+ GIPG
Sbjct: 270 GRPGSPGIPGLMGAPGAVGEPGDIYLAPGLKGERGLPGVPGSPGRPGQDGEPGRAGIPGI 329
Query: 73 NGTKTDHYAMG 83
G K + G
Sbjct: 330 PGPKGEPAKEG 340
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 32/65 (49%), Gaps = 14/65 (21%)
Query: 24 STVISGRIGLDGRDGLPGEPGL--------DGIPGRNGMDGIPGKDGLPGKD------GI 69
S G G G+DGLPG PGL G+PG G GIPG G PG+ GI
Sbjct: 466 SAGSPGEPGKQGKDGLPGPPGLHGQKGEPGQGLPGPKGSQGIPGITGYPGEKGNIGLPGI 525
Query: 70 PGTNG 74
PG +G
Sbjct: 526 PGQDG 530
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G+ GR GLPG+PG++G G G G P G PG G+PGT G K
Sbjct: 953 GDPGVPGR-GLPGQPGVNGTKGEKGSPGFP---GTPGHPGVPGTKGDK 996
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 41 GEPGLDGIPGRNGMDGIPG---KDGLPGKDGIPGTNGTKTD 78
G PG G+PGR G GIPG + GLPG +G PG G K +
Sbjct: 403 GSPGPQGVPGRQGERGIPGLQGERGLPGDEGFPGFPGQKGE 443
>gi|126310280|ref|XP_001371684.1| PREDICTED: collagen alpha-1(XXI) chain [Monodelphis domestica]
Length = 957
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + + G+ GL G G PG+PG G PG+ G DG PG G+ G GIPG+ G
Sbjct: 436 DVGSTPAPCVCPPGKPGLQGPKGDPGQPGNHGYPGQPGQDGKPGYQGISGSPGIPGSPGI 495
Query: 76 K 76
+
Sbjct: 496 Q 496
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 27/50 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G GL G G PG G+ G PG G GI G G PG G+PGT G K D
Sbjct: 650 GTPGLKGNKGEPGNQGITGPPGIKGEQGISGSPGDPGYPGLPGTPGKKGD 699
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 18/76 (23%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGR------------------NGMDGIPGKDGLPGKDG 68
I G G+ G G PG PGL G PG+ NG G PG+ G+PG+ G
Sbjct: 672 IKGEQGISGSPGDPGYPGLPGTPGKKGDSGNQGEKGLQGPKGENGRSGDPGQQGIPGQHG 731
Query: 69 IPGTNGTKTDHYAMGA 84
G G K D + GA
Sbjct: 732 AKGEKGEKGDPGSRGA 747
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 27/50 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G+DG PG G+ G PG G GI G GLPG G PG G K D
Sbjct: 467 GYPGQPGQDGKPGYQGISGSPGIPGSPGIQGARGLPGYKGEPGRAGIKGD 516
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 24 STVISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
S I G G+ G GLP GEPG GI G G+ G PG+ G+PG G G G K
Sbjct: 486 SPGIPGSPGIQGARGLPGYKGEPGRAGIKGDRGVPGFPGQHGMPGSKGEMGPRGEK 541
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 27/47 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
SG G DG+DGL G PG G G+ G G G+ G PG G PG+ G
Sbjct: 568 SGEPGRDGKDGLIGIPGFKGDTGQQGAPGPEGQRGEPGIPGFPGSRG 614
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMD---GIPGKDGLPGKDGIPGTNG 74
G G G G PG+PG DG PG G+ GIPG G+ G G+PG G
Sbjct: 458 GDPGQPGNHGYPGQPGQDGKPGYQGISGSPGIPGSPGIQGARGLPGYKG 506
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G G PG G+ G PG++G G DG
Sbjct: 846 GLPGRDGVPGLMGTPGHPGARGIKGQPGRNGAKGNDGF 883
>gi|332807914|ref|XP_513188.3| PREDICTED: complement C1q subcomponent subunit C isoform 3 [Pan
troglodytes]
gi|332807916|ref|XP_003307908.1| PREDICTED: complement C1q subcomponent subunit C isoform 1 [Pan
troglodytes]
gi|332807918|ref|XP_003307909.1| PREDICTED: complement C1q subcomponent subunit C isoform 2 [Pan
troglodytes]
gi|397485772|ref|XP_003814014.1| PREDICTED: complement C1q subcomponent subunit C isoform 1 [Pan
paniscus]
gi|397485774|ref|XP_003814015.1| PREDICTED: complement C1q subcomponent subunit C isoform 2 [Pan
paniscus]
Length = 245
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 27/42 (64%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G+PG PGL G PG++G DG+PG G PG IPG G K
Sbjct: 31 GCYGIPGMPGLPGAPGKDGYDGLPGPKGEPGIPAIPGIRGPK 72
>gi|396475221|ref|XP_003839734.1| hypothetical protein LEMA_P111740.1 [Leptosphaeria maculans JN3]
gi|312216304|emb|CBX96255.1| hypothetical protein LEMA_P111740.1 [Leptosphaeria maculans JN3]
Length = 1270
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E+H R + + SGR G +GRDG G G +G G NG DG G+DG G+DG G
Sbjct: 961 ELHGRGGYNQNMPGEFSGRDGYNGRDGYNGRDGYNGRDGYNGRDGYNGRDGYNGRDGYNG 1020
Query: 72 TNG 74
+G
Sbjct: 1021 RDG 1023
>gi|395822058|ref|XP_003784341.1| PREDICTED: collagen alpha-1(XXIV) chain [Otolemur garnettii]
Length = 1864
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
SG+ G+ G GLPG G+ G PG +G+ G GK GLPGK G+PG G+
Sbjct: 1426 SGKPGIPGLPGLPGPQGMQGQPGADGISGNAGKVGLPGKQGLPGIRGS 1473
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 29/48 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G GL G G+ G+PG DGI G G G+PGK GLPG G PG G
Sbjct: 1431 IPGLPGLPGPQGMQGQPGADGISGNAGKVGLPGKQGLPGIRGSPGRTG 1478
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G++GL G+ GL PG+ G PGR G+ G PG G+ G G+PG+ G
Sbjct: 1456 AGKVGLPGKQGL---PGIRGSPGRTGLAGSPGPRGVKGSSGLPGSPG 1499
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 32/62 (51%), Gaps = 12/62 (19%)
Query: 27 ISGRIGLDGRDGLPGEPGLDG------------IPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G GL+G GL GEPG G PG G G PG+DGL GKDG+ GT G
Sbjct: 1160 IEGPPGLEGESGLQGEPGPKGDVGPLGSVGGTGEPGLRGEPGAPGEDGLQGKDGLKGTPG 1219
Query: 75 TK 76
+
Sbjct: 1220 AR 1221
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTKTD 78
G +G G G GEPGL G PG G DG+ GKDGL PG G+PG +G K +
Sbjct: 1180 GDVGPLGSVGGTGEPGLRGEPGAPGEDGLQGKDGLKGTPGARGLPGEDGEKGE 1232
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E + D+G S +G GL G G PGE DG+ G++G+ G PG GLPG+DG G
Sbjct: 1175 EPGPKGDVGPLGSVGGTGEPGLRGEPGAPGE---DGLQGKDGLKGTPGARGLPGEDGEKG 1231
Query: 72 TNG 74
G
Sbjct: 1232 EMG 1234
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI---PGTNGTKTDHYAMGA 84
G GL G G G+ G G PG +G GIPG GLPG G+ PG +G + +G
Sbjct: 1402 QGEQGLKGEKGSEGQKGKKGAPGPSGKPGIPGLPGLPGPQGMQGQPGADGISGNAGKVGL 1461
Query: 85 DTKSFSDGVLPSVQRAIAAG 104
K G+ S R AG
Sbjct: 1462 PGKQGLPGIRGSPGRTGLAG 1481
>gi|344278762|ref|XP_003411161.1| PREDICTED: collagen alpha-1(XXIV) chain [Loxodonta africana]
Length = 1823
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
SG+ G G GL G G+ G PG +G+ G PGK GLPGK G+PG G+
Sbjct: 1379 SGKAGSPGLPGLSGPKGMQGYPGADGISGTPGKVGLPGKRGLPGIRGS 1426
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 31/60 (51%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G GL G G+ G PG DGI G G G+PGK GLPG G PGT G GA S
Sbjct: 1386 GLPGLSGPKGMQGYPGADGISGTPGKVGLPGKRGLPGIRGSPGTTGLAGSPGPQGAKGSS 1445
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNG 74
G+ G G G G PGL G+ G GM G PG DG+ PGK G+PG G
Sbjct: 1371 GKKGTPGPSGKAGSPGLPGLSGPKGMQGYPGADGISGTPGKVGLPGKRG 1419
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G++GL G+ GLPG + G PG G+ G PG G G G+PG+ G
Sbjct: 1410 GKVGLPGKRGLPG---IRGSPGTTGLAGSPGPQGAKGSSGLPGSPG 1452
>gi|33150626|gb|AAP97191.1|AF087892_1 C1q-C [Homo sapiens]
Length = 245
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 27/42 (64%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G+PG PGL G PG++G DG+PG G PG IPG G K
Sbjct: 31 GCYGIPGMPGLPGAPGKDGYDGLPGPKGEPGIPAIPGIRGPK 72
>gi|403268730|ref|XP_003926420.1| PREDICTED: collagen alpha-1(XXI) chain [Saimiri boliviensis
boliviensis]
Length = 957
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + I G+ GL G G PG PG G PG+ G DG PG G+ G G+PGT G
Sbjct: 436 DVGSTPAPCICPPGKPGLQGPKGDPGLPGNPGYPGQPGQDGKPGHQGIAGTPGVPGTQGI 495
Query: 76 K 76
+
Sbjct: 496 Q 496
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 29 GRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G G G+ G PG PGL +G PG+ GM G G G PG G+PG +G K + AMG
Sbjct: 623 GPPGQQGKKGAPGIPGLMGSNGSPGQPGMPGSKGSKGEPGIQGMPGASGLKGEPGAMGT 681
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 28/51 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G G G+DG PG G+ G PG G GI G GLPG G PG +G K D
Sbjct: 467 GYPGQPGQDGKPGHQGIAGTPGVPGTQGIQGARGLPGYKGEPGRDGDKGDR 517
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 27 ISGRIGLDGRDGLP------GEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTKT 77
+ G G G+ G+P GEPG+ G+PG +G+ G PG G PG+ G+PG G K
Sbjct: 639 LMGSNGSPGQPGMPGSKGSKGEPGIQGMPGASGLKGEPGAMGTPGEPGYMGLPGIQGKKG 698
Query: 78 DH 79
D
Sbjct: 699 DK 700
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G+ G PG G+ GIPG++G G G
Sbjct: 846 GLPGRDGVPGLMGVPGRPGVRGLKGIPGRNGEKGSQGF 883
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
PG PG DG+P G+ G+PG+ G+ G GIPG NG K
Sbjct: 844 FPGLPGRDGVP---GLMGVPGRPGVRGLKGIPGRNGEK 878
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 23/37 (62%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G PG PG G PGR+G DG+ G G G+ G PGT G
Sbjct: 560 GFPGLPGPAGEPGRHGKDGLMGSPGFKGEAGSPGTPG 596
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPG---------RNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
SG G G G PGEPG G+PG G G+ G+ G G+ GIPG G +
Sbjct: 670 SGLKGEPGAMGTPGEPGYMGLPGIQGKKGDKGNQGEKGVQGQKGENGRQGIPGPQGIQGH 729
Query: 79 HYAMG 83
H A G
Sbjct: 730 HGAKG 734
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G+ G GLP GEPG DG G G+ G PG G+PG G G G K
Sbjct: 489 VPGTQGIQGARGLPGYKGEPGRDGDKGDRGLPGFPGLHGMPGSKGEMGAKGDK 541
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G +G +G G PG PG G G G+ G+PG GL G+ G GT G
Sbjct: 636 IPGLMGSNGSPGQPGMPGSKGSKGEPGIQGMPGASGLKGEPGAMGTPG 683
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G A S G+ G G G+PG PG G+ G+ G G PG+ G G GIPG G+
Sbjct: 587 GEAGSPGTPGQDGPRGEPGIPGFPGSQGLMGQKGEIGPPGQQGKKGAPGIPGLMGS 642
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G+ G G PG G G G+ G+ G +G PG+ G+PG+ G+K
Sbjct: 609 FPGSQGLMGQKGEIGPPGQQGKKGAPGIPGLMGSNGSPGQPGMPGSKGSK 658
>gi|194211149|ref|XP_001495021.2| PREDICTED: collagen alpha-1(XXIV) chain [Equus caballus]
Length = 1709
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
SG+ G+ G GLPG G+ G G +G+ G PGK GLPGK G+PG G+
Sbjct: 1270 SGKPGIPGLPGLPGPKGVQGYHGADGISGNPGKAGLPGKQGLPGIRGS 1317
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTKTDHYAMGA 84
G +G G G+ GEPGL G PG G +G+ GKDGL PG+ G PG +G K + GA
Sbjct: 1024 GDVGPAGSVGVAGEPGLRGEPGAAGEEGLQGKDGLKGDPGERGFPGEDGEKGETGLPGA 1082
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+G A S ++G GL G G GE GL DG+ G G G PG+DG G+ G+PG G
Sbjct: 1025 DVGPAGSVGVAGEPGLRGEPGAAGEEGLQGKDGLKGDPGERGFPGEDGEKGETGLPGATG 1084
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ GL G+ GLPG + G PGR G+ G PG G G G+PG+ G
Sbjct: 1301 GKAGLPGKQGLPG---IRGSPGRAGLVGSPGPRGAKGSSGLPGSPG 1343
>gi|444728043|gb|ELW68507.1| Complement C1q subcomponent subunit C [Tupaia chinensis]
Length = 242
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+PG PGL G PG++G +G+PG G PG IPGT G K
Sbjct: 31 GIPGMPGLPGAPGKDGQEGLPGPRGEPGIPAIPGTRGPK 69
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 27 ISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G DG++GLP GEPG+ IPG G G G+ GLPG PG NG
Sbjct: 38 LPGAPGKDGQEGLPGPRGEPGIPAIPGTRGPKGRKGEPGLPGH---PGKNG 85
>gi|426328249|ref|XP_004024910.1| PREDICTED: complement C1q subcomponent subunit C isoform 1
[Gorilla gorilla gorilla]
gi|426328251|ref|XP_004024911.1| PREDICTED: complement C1q subcomponent subunit C isoform 2
[Gorilla gorilla gorilla]
gi|426328253|ref|XP_004024912.1| PREDICTED: complement C1q subcomponent subunit C isoform 3
[Gorilla gorilla gorilla]
Length = 245
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 27/42 (64%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G+PG PGL G PG++G DG+PG G PG IPG G K
Sbjct: 31 GCYGIPGMPGLPGAPGKDGYDGLPGPKGEPGIPAIPGIRGPK 72
>gi|268573586|ref|XP_002641770.1| C. briggsae CBR-EMB-9 protein [Caenorhabditis briggsae]
Length = 1759
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G G +G DG PG PG +G PG G DG PG +G+PG+DG+ G G + +H
Sbjct: 915 AGAPGQNGMDGYPGAPGDNGYPGAPGQDGYPGPNGIPGEDGLVGFPGLRGEH 966
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPG---RNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+ GR G DG GLPG PG DG PG G+ GI GK G G GIPG G + D Y
Sbjct: 633 LPGRQGNDGLPGLPGSPGQDGFPGLRGEPGLSGIDGKRGRQGSLGIPGLQGPQGDSYPGQ 692
Query: 84 ADTKSF-----SDGV--LPSVQ--RAIAAGLVI 107
T F ++G+ LP Q R I A L I
Sbjct: 693 PGTPGFKGEAGANGLPGLPGAQGPRGIPAPLRI 725
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 36/49 (73%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G+DG+ DGLPG PGLDG+ G G++G G+DGLPG G PG+NG
Sbjct: 1328 GLVGIDGKRGHDGLPGAPGLDGVIGVPGVEGDCGEDGLPGLPGAPGSNG 1376
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD--GLPGKDGIPGTNGTKTDHYAMGAD 85
G +G +G DG GEPGLDG PG+ G G PG+ G PG+ G PG NG G D
Sbjct: 790 QGEVGFNGVDGDCGEPGLDGYPGQPGAPGAPGETGYGFPGQVGYPGPNGEPGAAGLPGPD 849
Query: 86 TKSFSDGV 93
DG+
Sbjct: 850 GYPGRDGL 857
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G+ G G DGLPG PGL+G PG G G+P GLPG G PG G + +G D K
Sbjct: 1279 AGQDGYPGLDGLPGSPGLNGEPGTPGQYGMP---GLPGMPGEPGQTGYPGERGLVGIDGK 1335
Query: 88 SFSDGV 93
DG+
Sbjct: 1336 RGHDGL 1341
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK------DGLPGKDGIPGTNGTKTDHY 80
+ G G DG GLPG PG +G PG G+ G+PG+ +G PG+ G PG G + D
Sbjct: 1356 VEGDCGEDGLPGLPGAPGSNGYPGERGLPGVPGQQGRSGDNGYPGQPGQPGLKGPRGDDG 1415
Query: 81 AMGAD 85
G D
Sbjct: 1416 YPGRD 1420
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 36/65 (55%), Gaps = 18/65 (27%)
Query: 28 SGRIGLDG---RDGLPGEPGLDGI---------PGRNGMDGIPGK------DGLPGKDGI 69
SG +G+DG RDG PG G DG+ PG+NGMDG PG G PG+DG
Sbjct: 885 SGLVGIDGKKGRDGQPGPRGQDGVPGYRGEAGAPGQNGMDGYPGAPGDNGYPGAPGQDGY 944
Query: 70 PGTNG 74
PG NG
Sbjct: 945 PGPNG 949
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 27 ISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDG---LPGKDGIPGTNGTKTDHY 80
G++G G +G PG PG DG PGR+G+ G PG G + G+DG PG G + +
Sbjct: 827 FPGQVGYPGPNGEPGAAGLPGPDGYPGRDGLPGTPGYPGEVGMNGQDGAPGMPGARGESG 886
Query: 81 AMGADTKSFSDG 92
+G D K DG
Sbjct: 887 LVGIDGKKGRDG 898
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 18 DIGRAISTVISGRIGLDGRDG---LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+G + +G GL GRDG L GEPG G+PG G DG G G PG DG PG G
Sbjct: 1210 DVGYPGAPGENGDNGLQGRDGQPGLRGEPGQPGMPGLQGRDGQTGPIGPPGDDGYPGAPG 1269
Query: 75 TKT 77
T
Sbjct: 1270 QDT 1272
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 17/65 (26%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMD-----------------GIPGKDGLPGKDGI 69
+ G G G DG PG+PG G PG G G+PG DG PG+DG+
Sbjct: 798 VDGDCGEPGLDGYPGQPGAPGAPGETGYGFPGQVGYPGPNGEPGAAGLPGPDGYPGRDGL 857
Query: 70 PGTNG 74
PGT G
Sbjct: 858 PGTPG 862
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 23 ISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
++ I GL G +G PGE G G+PG NG+ G PGK G PG G
Sbjct: 1438 LAMEIRNPPGLSGDNGYPGEKGYPGLPGDNGLPGPPGKAGYPGASG 1483
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 27/47 (57%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G DG G PGE G DG PG G DG+PG G PG G+PG G +
Sbjct: 985 GTDGLPGYPGEQGQDGHPGLPGADGLPGLSGEPGDSGMPGYRGQPGE 1031
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---------GIPGTNG 74
+ + G G G+DGLPG PGL+G G G G PG+ G PG+ G+PG NG
Sbjct: 1114 ESGLPGLPGRQGQDGLPGAPGLEGECGEQGFPGAPGQPGYPGQQGREGEKGYPGMPGENG 1173
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GL G+ GL G+PGR G DG+PG G PG+DG PG G
Sbjct: 623 GLKGDRGLPGLPGRQGNDGLPGLPGSPGQDGFPGLRG 659
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 31/57 (54%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G + + G G GRDGLPG PG G G NG DG PG G G+ G+ G +G K
Sbjct: 838 GEPGAAGLPGPDGYPGRDGLPGTPGYPGEVGMNGQDGAPGMPGARGESGLVGIDGKK 894
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 40/93 (43%), Gaps = 14/93 (15%)
Query: 4 VQGMLQVLEVHDRRD------IGRAISTVISGRIGLDGRDGLPG-----EPGLDGIPGRN 52
+ GM E DR + G SG G G DGLPG PGLDG GR+
Sbjct: 413 IDGMPGYTEKGDRGEDGYPGFAGEPGLPGESGDCGYPGEDGLPGYDIQGPPGLDGQSGRD 472
Query: 53 GMDGIPGKDGLP---GKDGIPGTNGTKTDHYAM 82
G GIPG G P G+ G PGT K M
Sbjct: 473 GFPGIPGDIGDPGYSGEKGFPGTGVNKVGPAGM 505
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G+ G G +G PG+PG G+ G G DG PG+DGL DG+PG G +
Sbjct: 1386 VPGQQGRSGDNGYPGQPGQPGLKGPRGDDGYPGRDGL---DGMPGRGGPQ 1432
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I+G GL G GLPG PG DG+PG G++G G+ G PG G PG G +
Sbjct: 1105 ITGMPGLKGESGLPGLPGRQGQDGLPGAPGLEGECGEQGFPGAPGQPGYPGQQ 1157
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 23/35 (65%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL 63
G GL G DGLPG G +GIPG NG DG PG GL
Sbjct: 103 GHPGLQGLDGLPGMKGEEGIPGCNGTDGFPGIPGL 137
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G GL G+DGLPG G +G+ G+ G G PG+ G PG G PG G D+ G D +
Sbjct: 1172 NGLSGLRGQDGLPGLKGENGLDGQPGYPGAPGQLGTPGDVGYPGAPGENGDNGLQGRDGQ 1231
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 23 ISTVISGRIGLDGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPGKDGIPGTNG 74
I ++G+ G+DG GLPG+ G DG+PG G DG PG G G DG+PG G
Sbjct: 725 IVNQVAGQPGVDGMPGLPGDRGADGLPGLPGPVGPDGYPGTPGERGMDGLPGFPG 779
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTKTDHYAMGA 84
GR G G G+PGE GL G+ G++G+ G+ G++GL PG G PG GT D GA
Sbjct: 1157 QGREGEKGYPGMPGENGLSGLRGQDGLPGLKGENGLDGQPGYPGAPGQLGTPGDVGYPGA 1216
Query: 85 DTKSFSDGV 93
++ +G+
Sbjct: 1217 PGENGDNGL 1225
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 30/54 (55%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
D G + G GL G G PG GLDG+PG G +GIPG +G G GIPG
Sbjct: 83 DFGDVGAKGARGDRGLPGSPGHPGLQGLDGLPGMKGEEGIPGCNGTDGFPGIPG 136
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNG 74
G +G++G+DG PG PG G G G+DG G+DG P G+DG+PG G
Sbjct: 863 YPGEVGMNGQDGAPGMPGARGESGLVGIDGKKGRDGQPGPRGQDGVPGYRG 913
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGI 69
G+ G+ G G+PGEPG G PG G+ GI GK DGLPG G+
Sbjct: 1302 TPGQYGMPGLPGMPGEPGQTGYPGERGLVGIDGKRGHDGLPGAPGL 1347
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
R + G + G G G +G PG PG DG PG N GIPG+DGL G PG G
Sbjct: 912 RGEAGAPGQNGMDGYPGAPGDNGYPGAPGQDGYPGPN---GIPGEDGL---VGFPGLRGE 965
Query: 76 KTDH 79
D+
Sbjct: 966 HGDN 969
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 9/47 (19%)
Query: 28 SGRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGK---DGLPG 65
GR G +G G PG+PGL DG PGR+G+DG+PG+ GLPG
Sbjct: 1390 QGRSGDNGYPGQPGQPGLKGPRGDDGYPGRDGLDGMPGRGGPQGLPG 1436
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNG 74
+ G GLDG+ G PG PG G PG G G PG+ +GL G+DG PG G
Sbjct: 1186 LKGENGLDGQPGYPGAPGQLGTPGDVGYPGAPGENGDNGLQGRDGQPGLRG 1236
>gi|332244954|ref|XP_003271628.1| PREDICTED: complement C1q subcomponent subunit C isoform 1
[Nomascus leucogenys]
gi|332244956|ref|XP_003271629.1| PREDICTED: complement C1q subcomponent subunit C isoform 2
[Nomascus leucogenys]
gi|332244958|ref|XP_003271630.1| PREDICTED: complement C1q subcomponent subunit C isoform 3
[Nomascus leucogenys]
Length = 246
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 27/42 (64%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G+PG PGL G PG++G DG+PG G PG IPG G K
Sbjct: 32 GCYGIPGMPGLPGAPGKDGYDGLPGPKGEPGIPAIPGIRGPK 73
>gi|311253435|ref|XP_001924360.2| PREDICTED: collagen alpha-1(XIV) chain [Sus scrofa]
Length = 1795
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ + G G+PGE G G G G GIPG G PG+DG PG G
Sbjct: 1510 LSIQGMPGMPGEKGEKGETGLPGPQGIPGSVGSPGRDGSPGQRG 1553
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
I G G+ G G GE GL G G G G PG+DG PG+ G PG +
Sbjct: 1512 IQGMPGMPGEKGEKGETGLPGPQGIPGSVGSPGRDGSPGQRGFPGKD 1558
Score = 38.1 bits (87), Expect = 0.59, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G PG+ G G G G+PG G+PG G PG +G+
Sbjct: 1512 IQGMPGMPGEKGEKGETGLPGPQGIPGSVGSPGRDGS 1548
>gi|384110808|gb|AFH66971.1| ficolin, partial [Enhydris polylepis]
Length = 242
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 21 RAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPGTNG 74
R IS +I L G+ G+PG PG+ GI G G++G PG GL G+ DGIPG G
Sbjct: 37 RTEHQCISDKIILQGQPGIPGIPGVPGINGSEGLNGDPGPQGLSGEIGFDGIPGVAG 93
>gi|313236370|emb|CBY11688.1| unnamed protein product [Oikopleura dioica]
Length = 1179
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%)
Query: 13 VHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
V D D G +G++G G+DG PG+PG++G PGR G PG+ GL G G G
Sbjct: 275 VGDLGDKGPKGEDGKAGKLGWPGKDGEPGKPGMNGKPGRKARPGYPGRIGLKGFPGSAGG 334
Query: 73 NGTKTDHYAMGA 84
G + D A G+
Sbjct: 335 QGKEGDEGAAGS 346
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDHYAMGA 84
G G DG+ G G PG DG PG+ GM+G PG+ G PG+ G+ G G+ G
Sbjct: 281 KGPKGEDGKAGKLGWPGKDGEPGKPGMNGKPGRKARPGYPGRIGLKGFPGSAGGQGKEGD 340
Query: 85 DTKSFSDGV 93
+ + S GV
Sbjct: 341 EGAAGSKGV 349
>gi|181331962|ref|NP_001116702.1| collagen alpha-5(IV) chain precursor [Danio rerio]
Length = 1659
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G IG G G PG PG G PG + G+PG+DG PG GIPG NGTK + G +S
Sbjct: 83 GSIGPKGIRGPPGLPGFSGTPG---IPGLPGQDGAPGPRGIPGCNGTKGERGFPGNPGRS 139
Query: 89 FSDG 92
DG
Sbjct: 140 GLDG 143
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 30/47 (63%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G GL G PG G PGR+G+ GIPG GL G+DGIPG G K +
Sbjct: 1131 GAPGPAGLNGAPGRPGDPGRSGLPGIPGDKGLAGRDGIPGPAGQKGE 1177
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 24 STVISGRIGLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
S G GL G G PG PG LDG PG G++G PG+ G PG+ G+PG G K
Sbjct: 1105 SPGPKGDPGLPGFQGAPGNPGPKGLDGAPGPAGLNGAPGRPGDPGRSGLPGIPGDK 1160
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPG------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
D GR+ I G GL GRDG+PG EPGL G PG G G PG G G G PG
Sbjct: 1147 DPGRSGLPGIPGDKGLAGRDGIPGPAGQKGEPGLPGQPGLKGAKGDPGFPGPAGSAGFPG 1206
Query: 72 TNG 74
G
Sbjct: 1207 PKG 1209
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 30/50 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G GR GLPG PG G+ GR+G+ G G+ G PG G PG G K D
Sbjct: 1143 GRPGDPGRSGLPGIPGDKGLAGRDGIPGPAGQKGEPGLPGQPGLKGAKGD 1192
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G +G G G PG PG G PG G DG+PG+ G P G PG G K + G +
Sbjct: 894 GSMGPPGSKGNPGNPGAPGFPGPKGDDGVPGQSGNP---GFPGLKGDKGETGIQGPPGIT 950
Query: 89 FSDGVL 94
S VL
Sbjct: 951 TSTSVL 956
>gi|56786155|ref|NP_758957.2| complement C1q subcomponent subunit C precursor [Homo sapiens]
gi|166235903|ref|NP_001107573.1| complement C1q subcomponent subunit C precursor [Homo sapiens]
gi|20178281|sp|P02747.3|C1QC_HUMAN RecName: Full=Complement C1q subcomponent subunit C; Flags:
Precursor
gi|14290496|gb|AAH09016.1| C1QC protein [Homo sapiens]
gi|117644528|emb|CAL37759.1| hypothetical protein [synthetic construct]
gi|117645288|emb|CAL38110.1| hypothetical protein [synthetic construct]
gi|117645858|emb|CAL38396.1| hypothetical protein [synthetic construct]
gi|119615422|gb|EAW95016.1| complement component 1, q subcomponent, C chain, isoform CRA_a
[Homo sapiens]
gi|119615423|gb|EAW95017.1| complement component 1, q subcomponent, C chain, isoform CRA_a
[Homo sapiens]
gi|119615424|gb|EAW95018.1| complement component 1, q subcomponent, C chain, isoform CRA_a
[Homo sapiens]
gi|261859452|dbj|BAI46248.1| complement component 1, q subcomponent, C chain [synthetic
construct]
Length = 245
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 27/42 (64%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G+PG PGL G PG++G DG+PG G PG IPG G K
Sbjct: 31 GCYGIPGMPGLPGAPGKDGYDGLPGPKGEPGIPAIPGIRGPK 72
>gi|341886104|gb|EGT42039.1| CBN-COL-138 protein [Caenorhabditis brenneri]
Length = 281
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK--TDHY 80
G G DGR G PG G G G+NG DG PGKDG G+ G PG +G K DH
Sbjct: 219 GEAGQDGRPGQPGRQGPQGEAGQNGKDGEPGKDGEDGEPGKPGEDGPKGSCDHC 272
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I R +++ + G G G G GE G DG PG+ G G G+ G GKDG PG +G +
Sbjct: 198 IQRTVASPV-GEPGEPGEQGPKGEAGQDGRPGQPGRQGPQGEAGQNGKDGEPGKDGEDGE 256
Query: 79 HYAMGAD 85
G D
Sbjct: 257 PGKPGED 263
>gi|346716114|ref|NP_001231215.1| complement C1q subcomponent subunit C precursor [Sus scrofa]
Length = 245
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+PG PGL G PG++G DG+PG G PG IPGT G K
Sbjct: 34 GIPGIPGLPGAPGKDGHDGLPGPKGEPGIPAIPGTRGPK 72
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 34/60 (56%), Gaps = 12/60 (20%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGR---NGMDGIPGKDGLPGKD------GIPGTNG 74
+ G G DG DGLPG EPG+ IPG G G PGK GLPGK+ GIPGT G
Sbjct: 41 LPGAPGKDGHDGLPGPKGEPGIPAIPGTRGPKGEKGDPGKPGLPGKNGPMGTPGIPGTPG 100
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 30/55 (54%), Gaps = 12/55 (21%)
Query: 32 GLDGRDGLPGEPGL---DGIPGRNGMDGIP---------GKDGLPGKDGIPGTNG 74
G+ G GLPG PG DG+PG G GIP G+ G PGK G+PG NG
Sbjct: 34 GIPGIPGLPGAPGKDGHDGLPGPKGEPGIPAIPGTRGPKGEKGDPGKPGLPGKNG 88
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG-TKTDHYAMGA 84
I G G G G PG+PGL G G G GIPG G+ G G PG G K H ++ +
Sbjct: 64 AIPGTRGPKGEKGDPGKPGLPGKNGPMGTPGIPGTPGVMGPRGEPGEEGRYKQKHQSVFS 123
Query: 85 DTKSFSDGVLPSVQRAIAAGLVIYR 109
T+ + Q A LV +
Sbjct: 124 VTRQ-------TAQYPAANSLVKFN 141
>gi|334329838|ref|XP_001368478.2| PREDICTED: macrophage receptor MARCO-like [Monodelphis domestica]
Length = 522
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
T + G GL+G G PG+PG +G PG G G PG +G+PG G+PG +G K
Sbjct: 252 TGLQGIPGLNGIAGEPGQPGKNGSPGTKGEPGQPGVNGIPGIPGLPGASGAK 303
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
I+G G G++G PG G G PG NG+ GIPG G G G PG NG+
Sbjct: 263 IAGEPGQPGKNGSPGTKGEPGQPGVNGIPGIPGLPGASGAKGEPGKNGS 311
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 28/47 (59%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G+ G GLPG G G PG+NG G+PG GL G+ G PG G K D
Sbjct: 289 GIPGIPGLPGASGAKGEPGKNGSVGLPGIPGLSGQIGAPGKKGDKGD 335
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGKDGLPGKDG 68
D+ D+G S G+ G G GL G PGL+GI PG+NG G G+ G PG +G
Sbjct: 230 DKGDLGAIGSKGEVGQKGDKGMTGLQGIPGLNGIAGEPGQPGKNGSPGTKGEPGQPGVNG 289
Query: 69 IPGTNGTKTDHYAMGADTKSFSDGV--LPSVQRAIAA 103
IPG G A G K+ S G+ +P + I A
Sbjct: 290 IPGIPGLPGASGAKGEPGKNGSVGLPGIPGLSGQIGA 326
>gi|307202580|gb|EFN81915.1| hypothetical protein EAI_14096 [Harpegnathos saltator]
Length = 1637
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG---LPGKDGIPGTNGTK 76
S G G G G PG PG GIPG +G G PG+ G +PG+ GIPG+ GT
Sbjct: 652 SPSFPGFPGTPGSPGFPGIPGTQGIPGTSGTPGTPGRPGTPGIPGRPGIPGSPGTS 707
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 25/49 (51%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G G G P PG G PG G GIPG G+PG G PGT G
Sbjct: 639 ITPGSSGTPGTPGSPSFPGFPGTPGSPGFPGIPGTQGIPGTSGTPGTPG 687
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
I G G+ G +PG PG G PGR G+ IPG+ G+PG I
Sbjct: 585 AIPGSPGIPGTPAIPGSPGAPGTPGRPGVPSIPGRPGIPGSPTI 628
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 24/43 (55%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G PG PG PG G G PG G+PG GIPGT+GT
Sbjct: 641 PGSSGTPGTPGSPSFPGFPGTPGSPGFPGIPGTQGIPGTSGTP 683
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 20 GRAISTVISGRIGLDGRD---GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G I+ SG G G G PG PG G PG G GIPG G PG G PGT G
Sbjct: 636 GHPITPGSSGTPGTPGSPSFPGFPGTPGSPGFPGIPGTQGIPGTSGTPGTPGRPGTPG 693
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%)
Query: 30 RIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
+ G G G PG PG GIPGR G I G G+PG+ G PG GT +
Sbjct: 526 KPGSPGIPGTPGIPGTPGIPGRPGTPAIIGTPGIPGRPGTPGIPGTPS 573
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
G G+ G G+PG PG+ G PG + G PG G PG GIPGT
Sbjct: 528 GSPGIPGTPGIPGTPGIPGRPGTPAIIGTPGIPGRPGTPGIPGT 571
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 22 AISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
+I + G + G G+PG P + G PG G G PG +PG+ GIPG+
Sbjct: 575 SIISSYPGYPAIPGSPGIPGTPAIPGSPGAPGTPGRPGVPSIPGRPGIPGS 625
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 25/46 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G G+PG PG+ G+PG G G PG P GIPGT G
Sbjct: 1050 GYPGTPGTPGIPGTPGIPGVPGTPGTLGAPGIPFHPTYSGIPGTPG 1095
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
++IS G G PG PG IPG G G PG+ G+P G PG G+ T
Sbjct: 575 SIISSYPGYPAIPGSPGIPGTPAIPGSPGAPGTPGRPGVPSIPGRPGIPGSPT 627
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPG---------LDGIPGRNGMDGIPGKDGLPGKDGIP 70
GR + I G G+ GR G PG PG G P G GIPG +PG G P
Sbjct: 546 GRPGTPAIIGTPGIPGRPGTPGIPGTPSISIISSYPGYPAIPGSPGIPGTPAIPGSPGAP 605
Query: 71 GTNG 74
GT G
Sbjct: 606 GTPG 609
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 39 LPGEPGLDGIPGRNGM----DGIPGKDGLPGKDGIPGTNGTK 76
LP PG+ GIPG +G+ G PG G+PG GIPG GT
Sbjct: 1032 LPTRPGIHGIPGTSGIHLGYPGTPGTPGIPGTPGIPGVPGTP 1073
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 27/58 (46%), Gaps = 12/58 (20%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD------------GLPGKDGIPGT 72
I G G+ GR G P G GIPGR G GIPG +PG GIPGT
Sbjct: 538 IPGTPGIPGRPGTPAIIGTPGIPGRPGTPGIPGTPSISIISSYPGYPAIPGSPGIPGT 595
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 12/60 (20%)
Query: 27 ISGRIGLD---GRDGLPGEPGLDGIPGR---------NGMDGIPGKDGLPGKDGIPGTNG 74
I GR G G G+PG PG GIPG G IPG G+PG IPG+ G
Sbjct: 544 IPGRPGTPAIIGTPGIPGRPGTPGIPGTPSISIISSYPGYPAIPGSPGIPGTPAIPGSPG 603
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 24/48 (50%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G+ G G PG+PG G PG + IP G P G PGT GT
Sbjct: 741 GTPGIFGSPGTPGKPGTSGSPGIASIPAIPSYPGHPAISGSPGTPGTS 788
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPG---RNGMDGIPGKDGLPGKDGIPGTNGTK 76
SG G+ R G P P + IPG + G+ PG G+PG G PG GT
Sbjct: 303 SGTPGISERPGTPSRPVISAIPGISTKPGISAYPGTPGIPGTAGTPGIPGTP 354
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 27/64 (42%), Gaps = 15/64 (23%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGI---------------PGKDGLPGKDGIPGT 72
SG G GR G PG PG GIPG G I PG G PG G PG+
Sbjct: 680 SGTPGTPGRPGTPGIPGRPGIPGSPGTSIISIVPSYPGYPAIPESPGSPGAPGISGFPGS 739
Query: 73 NGTK 76
GT
Sbjct: 740 PGTP 743
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 24/48 (50%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G + G PG PG GIPG G+ G PG + G GIPG GT
Sbjct: 519 GHFETPSKPGSPGIPGTPGIPGTPGIPGRPGTPAIIGTPGIPGRPGTP 566
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G +I +++ G PG PG GI G G G PG G PG G PGT+G+
Sbjct: 705 GTSIISIVPSYPGYPAIPESPGSPGAPGISGFPGSPGTPGIFGSPGTPGKPGTSGSP 761
>gi|38455784|gb|AAR20893.1| complement C1qC [Sus scrofa]
Length = 223
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+PG PGL G PG++G DG+PG G PG IPGT G K
Sbjct: 34 GIPGIPGLPGAPGKDGHDGLPGPKGEPGIPAIPGTRGPK 72
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 34/60 (56%), Gaps = 12/60 (20%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGR---NGMDGIPGKDGLPGKD------GIPGTNG 74
+ G G DG DGLPG EPG+ IPG G G PGK GLPGK+ GIPGT G
Sbjct: 41 LPGAPGKDGHDGLPGPKGEPGIPAIPGTRGPKGEKGDPGKPGLPGKNGPMGTPGIPGTPG 100
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 30/55 (54%), Gaps = 12/55 (21%)
Query: 32 GLDGRDGLPGEPGL---DGIPGRNGMDGIP---------GKDGLPGKDGIPGTNG 74
G+ G GLPG PG DG+PG G GIP G+ G PGK G+PG NG
Sbjct: 34 GIPGIPGLPGAPGKDGHDGLPGPKGEPGIPAIPGTRGPKGEKGDPGKPGLPGKNG 88
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG-TKTDHYAMGA 84
I G G G G PG+PGL G G G GIPG G+ G G PG G K H ++ +
Sbjct: 64 AIPGTRGPKGEKGDPGKPGLPGKNGPMGTPGIPGTPGVMGPRGEPGEEGRYKQKHQSVFS 123
Query: 85 DTKSFSDGVLPSVQRAIAAGLVIYR 109
T+ + Q A LV +
Sbjct: 124 VTRQ-------TAQYPAANSLVKFN 141
>gi|23272263|gb|AAH23940.1| Col16a1 protein [Mus musculus]
Length = 575
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 440 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGD 493
>gi|443734391|gb|ELU18393.1| hypothetical protein CAPTEDRAFT_227631 [Capitella teleta]
Length = 827
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 32/50 (64%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G+PG PGL+GI GRNG+ G G+ G PG +G G NGTK
Sbjct: 217 LPGAAGDKGERGVPGLPGLNGIDGRNGLRGPQGESGPPGLNGCNGMNGTK 266
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNG 74
I GR GL G G G PGL+G G NG G PG GL PG+ G PG+NG
Sbjct: 238 IDGRNGLRGPQGESGPPGLNGCNGMNGTKGEPGIAGLPGYPGQKGEPGSNG 288
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G+DGR+GL G G G PG NG +G+ G G PG G+PG G K
Sbjct: 232 LPGLNGIDGRNGLRGPQGESGPPGLNGCNGMNGTKGEPGIAGLPGYPGQK 281
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
G +G +G GEPG+ G+PG G G PG +GLPG G
Sbjct: 258 GCNGMNGTKGEPGIAGLPGYPGQKGEPGSNGLPGLQG 294
>gi|62202026|gb|AAH92654.1| Col16a1 protein [Rattus norvegicus]
Length = 415
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 280 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGD 333
>gi|16553735|dbj|BAB71575.1| unnamed protein product [Homo sapiens]
Length = 245
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 27/42 (64%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G+PG PGL G PG++G DG+PG G PG IPG G K
Sbjct: 31 GCYGIPGMPGLPGAPGKDGYDGLPGPKGEPGIPAIPGIRGPK 72
>gi|334328244|ref|XP_001376425.2| PREDICTED: complement C1q subcomponent subunit C-like
[Monodelphis domestica]
Length = 245
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+PG PGL GIPG++G DG+ G G PG IPGT G K
Sbjct: 34 GIPGIPGLPGIPGKDGRDGVKGPKGEPGIPAIPGTRGPK 72
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 23/42 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
I G+ G DG G GEPG+ IPG G G G GLPG G
Sbjct: 44 IPGKDGRDGVKGPKGEPGIPAIPGTRGPKGQKGDPGLPGHPG 85
>gi|395521641|ref|XP_003764925.1| PREDICTED: complement C1q subcomponent subunit C [Sarcophilus
harrisii]
Length = 244
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+PG PGL G+PG++G DG+ G G PG IPGT+G K
Sbjct: 33 GIPGMPGLPGVPGKDGRDGLRGPKGEPGIPAIPGTSGPK 71
>gi|345794359|ref|XP_544444.3| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(XVI) chain [Canis
lupus familiaris]
Length = 1613
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ G+PG G+PGT G K D
Sbjct: 1478 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGVPGMRGLPGTKGEKGD 1531
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 22 AISTVISGRIGLDGRDGLPGEPGLDGI--PGRNGMDGIPGKDGLPGKDGIPGTNGT 75
++ ++ GL G+ G GEPG +G+ PG+ G G+PG G PG GI G G+
Sbjct: 735 SLQGAVTNAAGLPGKPGPKGEPGPEGVGRPGKPGQPGLPGVQGPPGLKGIQGEPGS 790
>gi|313890077|ref|ZP_07823712.1| LPXTG-motif cell wall anchor domain protein [Streptococcus
pseudoporcinus SPIN 20026]
gi|416851377|ref|ZP_11908522.1| gram positive anchor [Streptococcus pseudoporcinus LQ 940-04]
gi|313121438|gb|EFR44542.1| LPXTG-motif cell wall anchor domain protein [Streptococcus
pseudoporcinus SPIN 20026]
gi|356738866|gb|EHI64098.1| gram positive anchor [Streptococcus pseudoporcinus LQ 940-04]
Length = 511
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G+ G +GR+G G+ G DG+ GR+G DG G DG G+DG G NGT + G D
Sbjct: 210 VDGKDGKNGRNGQKGQDGKDGVDGRHGRDGKNGTDGAKGRDGKNGKNGTAGRNGRDGKDG 269
Query: 87 KSFSDGVLPSVQRAIAAG 104
+ +DG R A G
Sbjct: 270 QHGTDGAAGRNGRDGAKG 287
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 32/57 (56%)
Query: 36 RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
RDG GEPG DG G++G DG PG G GKDG G NG A GA ++ DG
Sbjct: 367 RDGKDGEPGKDGRDGKDGKDGQPGAPGRDGKDGAAGRNGRDGKDGAAGAPGRNGRDG 423
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 29/48 (60%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+G G GRDG G+PG +G PG G DG G+ G PGK G PG NG
Sbjct: 133 TGPSGPQGRDGAAGQPGKNGAPGVAGRDGADGRQGDPGKPGRPGNNGA 180
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 37/73 (50%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GR +G G +GRDG G+ G DG GRNG DG G+DG G+ G G +GT
Sbjct: 248 GRDGKNGKNGTAGRNGRDGKDGQHGTDGAAGRNGRDGAKGRDGKDGRKGQDGQHGTDGAD 307
Query: 80 YAMGADTKSFSDG 92
G D + DG
Sbjct: 308 GRAGLDGRHGRDG 320
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 36/71 (50%), Gaps = 25/71 (35%)
Query: 29 GRIGLDGRDGLPGEPGLDG------------------IPGRNGMDGIPGKDGLPGKDGIP 70
GR G DG+DG PG PG DG PGRNG D G+DG PG+DG+
Sbjct: 378 GRDGKDGKDGQPGAPGRDGKDGAAGRNGRDGKDGAAGAPGRNGRD---GQDGQPGRDGMN 434
Query: 71 GTNGTKTDHYA 81
G NG H+A
Sbjct: 435 GQNG----HHA 441
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNG 74
G G DGRDG G+ G G PGR+G DG G++G GKD G PG NG
Sbjct: 372 GEPGKDGRDGKDGKDGQPGAPGRDGKDGAAGRNGRDGKDGAAGAPGRNG 420
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG--IPGTNGT 75
GR +GR G DG+DG G PG + GR+G DG PG+DG+ G++G P NG
Sbjct: 393 GRDGKDGAAGRNGRDGKDGAAGAPGRN---GRDGQDGQPGRDGMNGQNGHHAPANNGQ 447
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR GR G DGR G G+ G DG GR G+DG G+DG G++G+ G +G D
Sbjct: 277 AGRNGRDGAKGRDGKDGRKGQDGQHGTDGADGRAGLDGRHGRDGRDGRNGLDGVDG--RD 334
Query: 79 HYAMGADTKSFSDGV 93
+ TK SDG
Sbjct: 335 GQSPLIKTKDHSDGS 349
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMD---GIPGKDGLPGKDGIPGTNG 74
T SG G DG G PG+ G G+ GR+G D G PGK G PG +G PG +G
Sbjct: 132 QTGPSGPQGRDGAAGQPGKNGAPGVAGRDGADGRQGDPGKPGRPGNNGAPGADG 185
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGR---NGMDGIPGKDGLPGKDGIPGTNGTK 76
GR G+ G+DGR G G+ G DG GR NG +G G++G GKDG GT+G
Sbjct: 218 GRNGQKGQDGKDGVDGRHGRDGKNGTDGAKGRDGKNGKNGTAGRNGRDGKDGQHGTDGAA 277
Query: 77 TDHYAMGADTKSFSDG 92
+ GA + DG
Sbjct: 278 GRNGRDGAKGRDGKDG 293
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 20 GRAISTVISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
G+ +GR G DG+DG G G DG GR+G DG G+DG G DG G
Sbjct: 251 GKNGKNGTAGRNGRDGKDGQHGTDGAAGRNGRDGAKGRDGKDGRKGQDGQHGTDGADGRA 310
Query: 74 GTKTDHYAMGADTKSFSDGV 93
G H G D ++ DGV
Sbjct: 311 GLDGRHGRDGRDGRNGLDGV 330
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 18/91 (19%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGL---DGIPGRNGMDG---------------IPGKD 61
G+ + ++GR G DGR G PG+PG +G PG +G DG G+D
Sbjct: 149 GKNGAPGVAGRDGADGRQGDPGKPGRPGNNGAPGADGRDGAPGKPGKPGKPGQKGADGQD 208
Query: 62 GLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
G+ GKDG G NG K G D + DG
Sbjct: 209 GVDGKDGKNGRNGQKGQDGKDGVDGRHGRDG 239
>gi|395526639|ref|XP_003765467.1| PREDICTED: collagen alpha-1(XVI) chain [Sarcophilus harrisii]
Length = 1605
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1470 AAAPGRPGPPGKDGAPGRPGSPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGD 1523
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G GR G PG PGL G GR G G+PG GLPG G G G
Sbjct: 1480 GKDGAPGRPGSPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDTG 1525
>gi|355747065|gb|EHH51679.1| hypothetical protein EGM_11103 [Macaca fascicularis]
Length = 2260
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 28/49 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G DGL GE G G+PGR G G G G PGK GIPG +G K
Sbjct: 1456 EGEAGESGIDGLNGEQGDYGLPGRKGEKGDEGSQGSPGKRGIPGDHGAK 1504
>gi|301608756|ref|XP_002933942.1| PREDICTED: pulmonary surfactant-associated protein D-like
[Xenopus (Silurana) tropicalis]
Length = 281
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 22 AISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
A+ +V+ G GL+GRDG G G G PG G+ G+PG GL G G PG G K +
Sbjct: 32 AMCSVVQGLPGLNGRDGRDGASGAKGDPGSQGLPGVPGTPGLRGNTGPPGKVGPKGNQ 89
>gi|297462925|ref|XP_608567.5| PREDICTED: collagen alpha-6(VI) chain [Bos taurus]
Length = 2343
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG---KDGLPGKDGIPGTNGTKTDHYAMG 83
G GL+G++G GE G+DG+ G G G+PG + G+ G GIPG G DH A G
Sbjct: 1445 GNRGLNGQEGEAGESGIDGLNGEQGDSGLPGAKGEKGIEGAQGIPGERGISGDHGAKG 1502
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 28/49 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G DGL GE G G+PG G GI G G+PG+ GI G +G K
Sbjct: 1453 EGEAGESGIDGLNGEQGDSGLPGAKGEKGIEGAQGIPGERGISGDHGAK 1501
>gi|297286914|ref|XP_001113364.2| PREDICTED: collagen alpha-6(VI) chain-like [Macaca mulatta]
Length = 2262
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 28/49 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G DGL GE G G+PGR G G G G PGK GIPG +G K
Sbjct: 1458 EGEAGESGIDGLNGEQGDYGLPGRKGEKGDEGSQGSPGKRGIPGDHGAK 1506
>gi|402861601|ref|XP_003895175.1| PREDICTED: collagen alpha-6(VI) chain [Papio anubis]
Length = 2262
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 28/49 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G DGL GE G G+PGR G G G G PGK GIPG +G K
Sbjct: 1458 EGEAGESGIDGLNGEQGDYGLPGRKGEKGDEGSQGSPGKRGIPGDHGAK 1506
>gi|365850331|ref|ZP_09390796.1| collagen triple helix repeat protein [Yokenella regensburgei ATCC
43003]
gi|364567507|gb|EHM45169.1| collagen triple helix repeat protein [Yokenella regensburgei ATCC
43003]
Length = 313
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ D G +T + G G++G DG G G DG G G GI G +G GKDGI G +G
Sbjct: 113 DKGDTGATGATGVQGIAGVNGNDGKDGIDGKDGTTGAQGAQGIAGANGSDGKDGINGKDG 172
Query: 75 TKTDHYAMGADTKS 88
T + A T++
Sbjct: 173 VTTTVTQLDAVTQA 186
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 10 VLEVHDRRDIGRAISTVI--------SGRI-GLDGRDGLPGEPGLDGIPGRNGMDGIPGK 60
V E DR D A+ T I +G G G G G G+ GI G NG DG K
Sbjct: 81 VKESQDRVDGDNALQTEIDNINQQAANGTFKGDKGDTGATGATGVQGIAGVNGNDG---K 137
Query: 61 DGLPGKDGIPGTNGTKTDHYAMGADTK---SFSDGVLPSVQR 99
DG+ GKDG G G + A G+D K + DGV +V +
Sbjct: 138 DGIDGKDGTTGAQGAQGIAGANGSDGKDGINGKDGVTTTVTQ 179
>gi|224048603|ref|XP_002193071.1| PREDICTED: collagen alpha-1(XXI) chain [Taeniopygia guttata]
Length = 945
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
SG G +G+DGLPG PG G G+ G G+ G G PG GIPG GTK
Sbjct: 568 SGDPGRNGKDGLPGSPGFKGEVGQPGSPGLEGHRGEPGIPGIPGNQGTK 616
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G PG PG G PGRNG DG+PG G G+ G PG+ G +
Sbjct: 560 GFPGLPGRSGDPGRNGKDGLPGSPGFKGEVGQPGSPGLE 598
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 33/61 (54%), Gaps = 12/61 (19%)
Query: 28 SGRIGLDGRDGLPG---------EPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNGT 75
+G +G +G GLPG EPGL G PG +G G IPG G PG GIPGT G
Sbjct: 637 TGLMGPEGSLGLPGAPGPKGDKGEPGLQGKPGSSGAKGDLGIPGAPGEPGYPGIPGTQGL 696
Query: 76 K 76
K
Sbjct: 697 K 697
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 27/50 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G GL G DG PG G G PG G GI G GLPG G PG +G K D
Sbjct: 467 GYPGLPGPDGKPGYQGSAGTPGIPGTPGIQGPRGLPGIKGEPGKDGAKGD 516
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD------GIPG 71
D GR + G G G G PG PGL+G G G+ GIPG G G+ G PG
Sbjct: 570 DPGRNGKDGLPGSPGFKGEVGQPGSPGLEGHRGEPGIPGIPGNQGTKGQKGEIGPPGQPG 629
Query: 72 TNGTKTDHYAMGAD 85
G+ D MG +
Sbjct: 630 AKGSPGDTGLMGPE 643
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL G DG+PG GL G PG G G+PGK+G G G+
Sbjct: 834 GLPGNDGIPGLMGLPGRPGARGTRGLPGKNGAKGNQGV 871
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGI---PGKDGLPGKDGIPGTNG 74
G+ G G G PG PG GI G G+ GI PGKDG G G+PG G
Sbjct: 476 GKPGYQGSAGTPGIPGTPGIQGPRGLPGIKGEPGKDGAKGDSGLPGFPG 524
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
PG PG DGIP G+ G+PG+ G G G+PG NG K +
Sbjct: 832 FPGLPGNDGIP---GLMGLPGRPGARGTRGLPGKNGAKGNQ 869
>gi|255522879|ref|NP_001157342.1| collagen alpha-1(XIV) chain [Equus caballus]
Length = 1796
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ + G G+PGE G G G G GIPG G PG+DG PG G
Sbjct: 1511 LSIQGMPGMPGEKGEKGETGLPGPQGIPGAVGSPGRDGSPGQRG 1554
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
I G G+ G G GE GL G G G G PG+DG PG+ G PG +
Sbjct: 1513 IQGMPGMPGEKGEKGETGLPGPQGIPGAVGSPGRDGSPGQRGFPGKD 1559
Score = 38.1 bits (87), Expect = 0.71, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G PG+ G G G G+PG G+PG G PG +G+
Sbjct: 1513 IQGMPGMPGEKGEKGETGLPGPQGIPGAVGSPGRDGS 1549
>gi|297471452|ref|XP_002685218.1| PREDICTED: collagen alpha-6(VI) chain [Bos taurus]
gi|296490817|tpg|DAA32930.1| TPA: collagen, type VI, alpha 1-like [Bos taurus]
Length = 2268
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG---KDGLPGKDGIPGTNGTKTDHYAMG 83
G GL+G++G GE G+DG+ G G G+PG + G+ G GIPG G DH A G
Sbjct: 1445 GNRGLNGQEGEAGESGIDGLNGEQGDSGLPGAKGEKGIEGAQGIPGERGISGDHGAKG 1502
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 28/49 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G DGL GE G G+PG G GI G G+PG+ GI G +G K
Sbjct: 1453 EGEAGESGIDGLNGEQGDSGLPGAKGEKGIEGAQGIPGERGISGDHGAK 1501
>gi|351699390|gb|EHB02309.1| Collagen alpha-1(IV) chain, partial [Heterocephalus glaber]
Length = 1636
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 32/55 (58%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG GL G+ G PG PG G+ G G+ G PG+ GLPG G PG G K DH
Sbjct: 872 TGQSGLPGLPGQQGTPGIPGFPGLKGEMGIMGAPGQPGLPGPLGTPGLPGEKGDH 926
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 39/77 (50%), Gaps = 20/77 (25%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKDGL---------PGKDGIPGTN 73
G +G G GLPGE PGL GIPG G G+PG GL PG DGIPG+
Sbjct: 1121 GSVGYPGSPGLPGEKGDKGLPGLSGIPGVKGEAGLPGTPGLSGPAGQKGEPGSDGIPGSA 1180
Query: 74 GTKTDHYAMGADTKSFS 90
G K + +T ++S
Sbjct: 1181 GEKGE-----PETPAYS 1192
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 28 SGRIGLDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
SG GL G G PG PGLD G+PG G G+PG G G GIPG G K
Sbjct: 837 SGPPGLKGEKGFPGFPGLDMPGPKGDKGTQGLPGLTGQSGLPGLPGQQGTPGIPGFPGLK 896
Query: 77 TDHYAMGADTKSFSDGVL 94
+ MGA + G L
Sbjct: 897 GEMGIMGAPGQPGLPGPL 914
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 1 MGRVQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK 60
MG V+G E D+ + G+ T G G G G+PG+ G G PG+ G G PG
Sbjct: 961 MGSVKG-----EKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGYPGQPGPKGDPGI 1015
Query: 61 DGLPGKDGIPGTNGT 75
G PG G+PG G+
Sbjct: 1016 SGTPGAPGLPGPKGS 1030
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G PG+PG G +PGR+G++G+PG G PG G PG G +
Sbjct: 463 GFPGQPGAKGDRGLPGRDGLEGVPGPQGTPGLMGQPGAKGEPGE 506
>gi|293339632|gb|ADE44108.1| collagen type XXI alpha 1 [Sus scrofa]
Length = 895
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + I G+ GL G G PG+PG G PG+ G DG PG G+ G G+PG+ G
Sbjct: 436 DVGSTEAPCICPPGKPGLQGPKGDPGQPGNPGYPGQPGQDGKPGYQGVAGSPGVPGSPGI 495
Query: 76 K 76
+
Sbjct: 496 Q 496
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 28/51 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G G G+DG PG G+ G PG G GI G GLPG G PG +G K D
Sbjct: 467 GYPGQPGQDGKPGYQGVAGSPGVPGSPGIQGARGLPGYRGEPGRDGEKGDR 517
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G G PG G+ G+PG++G G G+
Sbjct: 846 GLPGRDGVPGLMGAPGRPGAKGLKGLPGRNGAKGSQGL 883
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G A S + G G+ G GLPG EPG DG G G+ G PG G+PG G G G K
Sbjct: 482 GVAGSPGVPGSPGIQGARGLPGYRGEPGRDGEKGDRGLPGFPGLHGMPGSKGEMGPKGDK 541
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNG 74
+G G G+DGL GEPG+ G PG G+ G G+ G P GK G PG G
Sbjct: 589 AGPPGAPGQDGLRGEPGIPGFPGNQGLMGQKGEIGPPGPLGKKGAPGIPG 638
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GRA G+ GL G G GE G G PG++G+ G PG G PG G+ G G
Sbjct: 566 GRAGEPGRHGKDGLMGSPGYKGEAGPPGAPGQDGLRGEPGIPGFPGNQGLMGQKG 620
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G G G+DGL G PG G G G PG+DGL G+ GIPG G +
Sbjct: 568 AGEPGRHGKDGLMGSPGYKG---EAGPPGAPGQDGLRGEPGIPGFPGNQ 613
>gi|38649122|gb|AAH63249.1| Collagen, type I, alpha 1 [Danio rerio]
Length = 1447
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 30/57 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G +G G G PGE G G PG G G PG DGLPG G PG NG K D A G
Sbjct: 770 AQGLVGPTGARGPPGERGETGAPGPAGFAGPPGADGLPGAKGEPGDNGAKGDAGAPG 826
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
G+ G DG G PG PG G PG G G PG GLP G G G +G K D G
Sbjct: 211 GKNGEDGESGKPGRPGERGPPGPQGARGFPGTPGLPGIKGHRGFSGLDGAKGDAGPAG 268
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDH 79
G G G PG G+PG G G PGK G PG+ G PG +G++ D
Sbjct: 616 GEQGAAGPPGFQGLPGPQGATGEPGKSGEQGAPGEAGAPGPSGSRGDR 663
>gi|410966664|ref|XP_003989850.1| PREDICTED: collagen alpha-1(XVI) chain [Felis catus]
Length = 1610
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ G+PG G+PGT G K D
Sbjct: 1475 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGVPGMRGLPGTKGEKGD 1528
>gi|56790315|ref|NP_954684.1| collagen alpha-1(I) chain precursor [Danio rerio]
gi|38570069|gb|AAR24536.1| chihuahua [Danio rerio]
Length = 1447
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 30/57 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G +G G G PGE G G PG G G PG DGLPG G PG NG K D A G
Sbjct: 770 AQGLVGPTGARGPPGERGETGAPGPAGFAGPPGADGLPGAKGEPGDNGAKGDAGAPG 826
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
G+ G DG G PG PG G PG G G PG GLP G G G +G K D G
Sbjct: 211 GKNGEDGESGKPGRPGERGPPGPQGARGFPGTPGLPGIKGHRGFSGLDGAKGDAGPAG 268
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDH 79
G G G PG G+PG G G PGK G PG+ G PG +G++ D
Sbjct: 616 GEQGAAGPPGFQGLPGPQGATGEPGKSGEQGAPGEAGAPGPSGSRGDR 663
>gi|326670519|ref|XP_694040.5| PREDICTED: collagen alpha-1(IV) chain [Danio rerio]
Length = 1640
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 31/50 (62%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G IG G G G PG G PGR G+ G+PG +G PG GIPG NGTK +
Sbjct: 77 GEIGAPGIKGSRGLPGQAGFPGRPGIPGLPGLEGAPGPQGIPGCNGTKGE 126
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGL----------DGIPGRNGMDGIPGKDGLPGKDGI 69
G A + +G GL G+ G GEPG G+PG G G PG DGLPGKDG
Sbjct: 478 GPAGNAGFNGAPGLMGKPGAQGEPGDIFVAPGLKGDKGLPGTTGDRGFPGVDGLPGKDGR 537
Query: 70 PGTNGTKTDHYAMG 83
PG GTK + G
Sbjct: 538 PGYPGTKGEPAKFG 551
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 15 DRRDIGRAI---STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
DR +IG S + G+ G GR G+PG PGL+G PG G+ G G G G DGIPG
Sbjct: 75 DRGEIGAPGIKGSRGLPGQAGFPGRPGIPGLPGLEGAPGPQGIPGCNGTKGERGFDGIPG 134
Query: 72 TNG 74
G
Sbjct: 135 ITG 137
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 29 GRIGLDGRD--GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G GL G D G PG+ G G+PG G G+PG+ G+PGKDG PG G K + MG
Sbjct: 800 GYQGLPGLDMPGPPGDRGSPGVPGLPGSKGLPGQPGVPGKDGFPGERGPKGEIGIMG 856
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G IG G G PGE G+ G+PG G G PG+ G PG G PG +G K
Sbjct: 1074 GSIGYPGSPGKPGEKGVGGLPGSPGEPGTPGRPGEPGLQGPPGPHGEK 1121
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG---KDGLPGKDGIPG 71
D+ IG S G G+ G G PGEPG G PG G+ G PG + G G+DGIPG
Sbjct: 1072 DQGSIGYPGSPGKPGEKGVGGLPGSPGEPGTPGRPGEPGLQGPPGPHGEKGQSGQDGIPG 1131
Query: 72 TNGTKTD 78
G + +
Sbjct: 1132 FTGERGE 1138
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 32/71 (45%), Gaps = 23/71 (32%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRN-----------------------GMDGIPGKDGLP 64
SGR GL G G PGE G+ G PG G GIPG+ G P
Sbjct: 628 SGRPGLQGDRGFPGERGVPGFPGDKGDPGLPGIGLPGPPGPKGYSGIPGPSGIPGESGEP 687
Query: 65 GKDGIPGTNGT 75
G+DG+PG GT
Sbjct: 688 GQDGLPGRAGT 698
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%)
Query: 23 ISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
++ + G GL G G G PG+DG+PG++G G PG G P K GI G G D
Sbjct: 506 VAPGLKGDKGLPGTTGDRGFPGVDGLPGKDGRPGYPGTKGEPAKFGIKGDRGPDGD 561
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGE--PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G++ I G G G G+PG PG G PG G G PG G+PG GIPGT G
Sbjct: 1120 EKGQSGQDGIPGFTGERGEPGVPGRGLPGSRGEPGGKGDKGNPGLPGIPGSPGIPGTKGD 1179
Query: 76 K 76
K
Sbjct: 1180 K 1180
>gi|224073359|ref|XP_002193897.1| PREDICTED: collagen alpha-1(XXVII) chain B-like [Taeniopygia guttata]
Length = 1743
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 35/61 (57%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
D+G+ G G G G+ G PG G+ GR G +G PG DG+PGKDG+PG G +
Sbjct: 1284 DVGQKGKQGAQGSAGSRGSPGILGLPGPRGVVGRQGQEGAPGVDGVPGKDGVPGMLGEQG 1343
Query: 78 D 78
D
Sbjct: 1344 D 1344
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN---GTKTDHYAMGADTKS 88
G G G PG+ GLDG G+ G G+PG G PGK G G+ G K A G+
Sbjct: 1241 GEPGDTGYPGQEGLDGERGKPGQQGLPGDPGSPGKPGAKGSKGDVGQKGKQGAQGSAGSR 1300
Query: 89 FSDGVL 94
S G+L
Sbjct: 1301 GSPGIL 1306
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++G G G G+PG PG G PG G G+PG+ G GK G PG G
Sbjct: 1350 VTGMPGKRGNPGVPGLPGAQGPPGFKGERGLPGQTGQTGKRGSPGGTG 1397
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 31/65 (47%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
G G +G G G PG GIPG G +G PGK G GK G G+ G + MG+ K
Sbjct: 1098 KGEKGNEGLKGKEGSPGYPGIPGVRGPEGKPGKQGEKGKPGQKGSKGYQGQLGEMGSPGK 1157
Query: 88 SFSDG 92
G
Sbjct: 1158 QGPKG 1162
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G++G DG G GE G +G G G +G+ GK+G PG GIPG G + G K
Sbjct: 1077 TGQLGPDGIKGDKGEQGPEGEKGEKGNEGLKGKEGSPGYPGIPGVRGPEGKPGKQGEKGK 1136
Query: 88 SFSDG 92
G
Sbjct: 1137 PGQKG 1141
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+GR G G+ G+DG+PG G G G G+ G+PGK G PG G+PG G
Sbjct: 1315 VGRQGQEGAPGVDGVPGKDGVPGMLGEQGDDGDEGVTGMPGKRGNPGVPGLPGAQG 1370
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 24/46 (52%)
Query: 30 RIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
R G G GLPG G G PGR G G PG G PG G PG G+
Sbjct: 569 RNGQKGDVGLPGLTGFPGPPGRKGYKGYPGPLGHPGDQGEPGPAGS 614
>gi|171846460|gb|AAI61663.1| Col1a1 protein [Danio rerio]
Length = 1366
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 30/57 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G +G G G PGE G G PG G G PG DGLPG G PG NG K D A G
Sbjct: 770 AQGLVGPTGARGPPGERGETGAPGPAGFAGPPGADGLPGAKGEPGDNGAKGDAGAPG 826
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
G+ G DG G PG PG G PG G G PG GLP G G G +G K D G
Sbjct: 211 GKNGEDGESGKPGRPGERGPPGPQGARGFPGTPGLPGIKGHRGFSGLDGAKGDAGPAG 268
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDH 79
G G G PG G+PG G G PGK G PG+ G PG +G++ D
Sbjct: 616 GEQGAAGPPGFQGLPGPQGATGEPGKSGEQGAPGEAGAPGPSGSRGDR 663
>gi|426342144|ref|XP_004036372.1| PREDICTED: collagen alpha-6(VI) chain [Gorilla gorilla gorilla]
Length = 2231
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 28/49 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G +G DGL GE G +G+PGR G G G G PGK G PG G K
Sbjct: 1458 EGEAGENGIDGLNGEQGDNGLPGRKGEKGDEGSQGSPGKRGTPGDRGAK 1506
>gi|340724570|ref|XP_003400654.1| PREDICTED: collagen alpha-1(IV) chain-like [Bombus terrestris]
Length = 517
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 28/56 (50%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ S+ G G++G G P PG G PG G G PG G PG G GT GT
Sbjct: 278 GQPASSGTPGTSGIEGTPGTPDTPGTPGTPGNPGTPGTPGTSGTPGTPGTSGTPGT 333
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 30/66 (45%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
SG G G +G PG P G PG G G PG G G G PGT+GT G
Sbjct: 283 SGTPGTSGIEGTPGTPDTPGTPGTPGNPGTPGTPGTSGTPGTPGTSGTPGTPGTSGTPDT 342
Query: 88 SFSDGV 93
S + G+
Sbjct: 343 SGTAGI 348
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 24/49 (48%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
I G G G PG PG G PG G G PG G G G PGT+GT
Sbjct: 291 IEGTPGTPDTPGTPGTPGNPGTPGTPGTSGTPGTPGTSGTPGTPGTSGT 339
>gi|339251974|ref|XP_003371210.1| cuticle collagen dpy-13 [Trichinella spiralis]
gi|316968583|gb|EFV52845.1| cuticle collagen dpy-13 [Trichinella spiralis]
Length = 394
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 29/42 (69%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIP 70
GRIG GRDG+ G PG GI G+ GM G+PG DG PG+ G P
Sbjct: 222 GRIGDPGRDGVDGIPGRAGIDGKEGMPGVPGLDGQPGEPGRP 263
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 6 GMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG 65
GM + + + +G G G GLPG+ G G PGR+G+DGIPG+ G+ G
Sbjct: 184 GMPGISQKSCEAKVELPCPQCPAGPPGAPGSVGLPGDVGRIGDPGRDGVDGIPGRAGIDG 243
Query: 66 KDGIPGTNG 74
K+G+PG G
Sbjct: 244 KEGMPGVPG 252
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 29 GRIGLDG---RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +GL G R G PG G+DGIPGR G+DG G G+PG DG PG G
Sbjct: 213 GSVGLPGDVGRIGDPGRDGVDGIPGRAGIDGKEGMPGVPGLDGQPGEPG 261
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNG 53
I GR G+DG++G+PG PGLDG PG G
Sbjct: 235 IPGRAGIDGKEGMPGVPGLDGQPGEPG 261
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 36 RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
R G PG PG IPGRNG +G PG G PG GI
Sbjct: 158 RRGFPGRPG---IPGRNGENGRPGMPGAPGMPGI 188
>gi|329755329|ref|NP_001193325.1| complement C1q subcomponent subunit C precursor [Bos taurus]
gi|296490077|tpg|DAA32190.1| TPA: complement component 1, q subcomponent, C chain isoform 1
[Bos taurus]
Length = 243
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 26/39 (66%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+PG PGL G PG++G DG+PG G PG PGT G K
Sbjct: 32 GIPGMPGLPGAPGKDGYDGLPGPKGEPGIPAAPGTRGPK 70
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 26/48 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G DG DGLPG G GIP G G G+ G PG G PG NG
Sbjct: 39 LPGAPGKDGYDGLPGPKGEPGIPAAPGTRGPKGQKGDPGTPGYPGKNG 86
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT----KTDHYAM 82
I G G G G+PG G PG+NG G PG G PG G PG G K H ++
Sbjct: 60 IPAAPGTRGPKGQKGDPGTPGYPGKNGPMGTPGIPGAPGTMGPPGEPGVEGRYKQKHQSV 119
Query: 83 GADTKSFSDGVLPSVQRAIAAGLVIYR 109
+ T+ +VQ A LV +
Sbjct: 120 FSVTRQ-------TVQFPEANSLVKFN 139
>gi|383493868|ref|YP_005411544.1| streptococcal collagen-like protein (B) SclB [Streptococcus
pyogenes MGAS1882]
gi|378929596|gb|AFC68013.1| streptococcal collagen-like protein (B) SclB [Streptococcus
pyogenes MGAS1882]
Length = 424
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+G+ G DG+DGLPG+ G DG +NG G+PGKD GKDG PG KT DT
Sbjct: 285 AGKDGQDGKDGLPGKDGKDG---QNGKAGLPGKD---GKDGQPGKPAPKTPEVPQKPDT 337
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G G+DG G+ G G G G DG GKDGLPGKDG G NG
Sbjct: 262 GPVGPAGKDGQNGKDGERGPVGPAGKDGQDGKDGLPGKDGKDGQNG 307
>gi|298642|gb|AAB25797.1| type XVI collagen alpha 1 chain [Homo sapiens]
Length = 1186
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1051 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGD 1104
>gi|443697253|gb|ELT97788.1| hypothetical protein CAPTEDRAFT_226709 [Capitella teleta]
Length = 1531
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 32/47 (68%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
+ G +G G DG G+PGL+G PGRNG G PG DGL G DG+PG +
Sbjct: 949 MPGDVGPSGFDGATGDPGLEGTPGRNGSPGRPGLDGLKGDDGLPGLD 995
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 29 GRIGLDGRDGLPGEPG------LDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G GL G DG+PG PG ++G+ GRNG G+PG G+PG+ G G G D
Sbjct: 1091 GDPGLRGMDGMPGLPGDKGDYGVEGLRGRNGNKGLPGDSGIPGRPGAKGQGGQFGDPGEA 1150
Query: 83 GADTKS 88
G + K
Sbjct: 1151 GFNGKE 1156
>gi|423278780|ref|ZP_17257694.1| hypothetical protein HMPREF1203_01911 [Bacteroides fragilis HMW
610]
gi|404585772|gb|EKA90376.1| hypothetical protein HMPREF1203_01911 [Bacteroides fragilis HMW
610]
Length = 691
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G DG+DG G+ G+DG G++G DG GKDG+ G DG G G K
Sbjct: 131 VDGTDGKDGQDGTDGKDGVDGTDGKDGQDGTDGKDGVDGTDGKDGVEGDK 180
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G G DG+DG G+ G+DG G++G DG GKDG+ G DG G +GT
Sbjct: 115 GTDGKDGQDGTDGKDGVDGTDGKDGQDGTDGKDGVDGTDGKDGQDGT 161
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G DG DG G+ G DG G +G DG G+DG GKDG+ GT+G
Sbjct: 109 GQNGQDGTDGKDGQDGTDGKDGVDGTDGKDGQDGTDGKDGVDGTDG 154
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G DG+DG+ G G DG G +G DG+ G DG G+DG G +G
Sbjct: 121 GQDGTDGKDGVDGTDGKDGQDGTDGKDGVDGTDGKDGQDGTDGKDG 166
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNG 74
G+ G DG+DG G+ G DG G++G DG + G DG G+DG G +G
Sbjct: 100 GKKGEDGKDGQNGQDGTDGKDGQDGTDGKDGVDGTDGKDGQDGTDGKDG 148
>gi|354497989|ref|XP_003511099.1| PREDICTED: collagen alpha-1(IV) chain [Cricetulus griseus]
Length = 1623
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 35/65 (53%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ G T SG GL G+ G PG PGL G+ G G+ G PG+ G PG G PG G
Sbjct: 798 DKGSQGLPGLTGQSGLPGLPGQQGTPGFPGLPGVKGEMGVMGTPGQPGSPGPAGTPGLPG 857
Query: 75 TKTDH 79
K DH
Sbjct: 858 EKGDH 862
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 34/63 (53%), Gaps = 15/63 (23%)
Query: 31 IGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTNGT 75
IG G GLPGE PGLDGIPG G G+PG + G PG DGIPG+ G
Sbjct: 1059 IGHPGSPGLPGEKGDKGLPGLDGIPGVKGEVGLPGTPGPIGPAGQKGEPGSDGIPGSAGE 1118
Query: 76 KTD 78
K +
Sbjct: 1119 KGE 1121
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 43/96 (44%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ + G A + + G G G G+ G PG G+PG G G+PG DG+PG G G G
Sbjct: 1034 EKGEKGSAGTPGMPGSPGPKGSPGIIGHPGSPGLPGEKGDKGLPGLDGIPGVKGEVGLPG 1093
Query: 75 TKTDHYAMGADTKSFSDGVLPSVQRAIAAGLVIYRF 110
T G + SDG+ S GL F
Sbjct: 1094 TPGPIGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGF 1129
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
T + G G G +GLPG PG G G G+ G+PG G PG GIPGT G K +
Sbjct: 661 TGLPGSPGRPGFNGLPGNPGPQGQKGEPGI-GLPGLKGQPGLPGIPGTPGEKGN 713
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G++G+PG G+PG G PG G + +
Sbjct: 443 GFPGQPGAKGDRGLPGRDGIEGLPGPQGVPGLMGQPGAKGEPGEIF 488
>gi|291407760|ref|XP_002720222.1| PREDICTED: type IV collagen alpha 5 isoform 2 [Oryctolagus
cuniculus]
Length = 1685
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G+PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGVPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G GLPG PG+ G G G+ G PGK GL G+ G+PG+ G K +
Sbjct: 961 GAKGEKGEPGLPGIPGISGPKGYQGLPGDPGKPGLSGQPGLPGSPGPKGN 1010
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 26/42 (61%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G PGEPG G PG++G +G PG GLPG G PG G
Sbjct: 284 VKGEKGEPGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPG 325
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 31/57 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
ISG G G G PG+PGL G PG G G G GLPG+ G+ G G K + MG
Sbjct: 977 ISGPKGYQGLPGDPGKPGLSGQPGLPGSPGPKGNPGLPGQPGLIGPPGLKGNLGDMG 1033
>gi|301777204|ref|XP_002924023.1| PREDICTED: collagen alpha-1(XVI) chain-like [Ailuropoda melanoleuca]
Length = 1613
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ G+PG G+PGT G K D
Sbjct: 1478 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGVPGMRGLPGTKGEKGD 1531
>gi|291407762|ref|XP_002720223.1| PREDICTED: type IV collagen alpha 5 isoform 3 [Oryctolagus
cuniculus]
Length = 1688
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G+PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGVPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G GLPG PG+ G G G+ G PGK GL G+ G+PG+ G K +
Sbjct: 961 GAKGEKGEPGLPGIPGISGPKGYQGLPGDPGKPGLSGQPGLPGSPGPKGN 1010
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 26/42 (61%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G PGEPG G PG++G +G PG GLPG G PG G
Sbjct: 284 VKGEKGEPGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPG 325
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 31/57 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
ISG G G G PG+PGL G PG G G G GLPG+ G+ G G K + MG
Sbjct: 977 ISGPKGYQGLPGDPGKPGLSGQPGLPGSPGPKGNPGLPGQPGLIGPPGLKGNLGDMG 1033
>gi|291407758|ref|XP_002720221.1| PREDICTED: type IV collagen alpha 5 isoform 1 [Oryctolagus
cuniculus]
Length = 1691
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G+PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGVPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G GLPG PG+ G G G+ G PGK GL G+ G+PG+ G K +
Sbjct: 961 GAKGEKGEPGLPGIPGISGPKGYQGLPGDPGKPGLSGQPGLPGSPGPKGN 1010
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 26/42 (61%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G PGEPG G PG++G +G PG GLPG G PG G
Sbjct: 284 VKGEKGEPGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPG 325
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 31/57 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
ISG G G G PG+PGL G PG G G G GLPG+ G+ G G K + MG
Sbjct: 977 ISGPKGYQGLPGDPGKPGLSGQPGLPGSPGPKGNPGLPGQPGLIGPPGLKGNLGDMG 1033
>gi|332522700|ref|ZP_08398952.1| LPXTG-motif cell wall anchor domain protein [Streptococcus porcinus
str. Jelinkova 176]
gi|332313964|gb|EGJ26949.1| LPXTG-motif cell wall anchor domain protein [Streptococcus porcinus
str. Jelinkova 176]
Length = 477
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGI---PGRNGMDGIPGKDGLPGKDGIPGTN 73
GR G DG+DG PG PG DG PG G DG+ GK+G PG+DG+ G N
Sbjct: 355 GRDGKDGKDGKPGVPGRDGKDGQPGAPGRDGMNGKNGQPGRDGMNGQN 402
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNG 74
G G DGRDG G+ G G+PGR+G DG PG+DG+ GK+G PG +G
Sbjct: 349 GEPGKDGRDGKDGKDGKPGVPGRDGKDGQPGAPGRDGMNGKNGQPGRDG 397
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG---- 74
GR GR G DGR G G+ G DG GR G+DG G+DG G++G+ G +G
Sbjct: 254 AGRNGRDGAKGRDGKDGRKGQDGQHGTDGADGRAGLDGRHGRDGRDGRNGLDGVDGRDGL 313
Query: 75 ---TKTDHYAMGADTKSF--SDGVLPSVQ 98
KT ++ G+ T +F DG S+
Sbjct: 314 SPVVKTQTHSDGSHTITFLNPDGTRSSIN 342
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GR + G+ G +G DG G G DG GR+G G G+DG G+DG G G H
Sbjct: 219 GRDGKDGMKGQDGKNGTDGTAGRDGKDGAKGRDGQAGRNGRDGAKGRDGKDGRKGQDGQH 278
Query: 80 YAMGADTKSFSDG 92
GAD ++ DG
Sbjct: 279 GTDGADGRAGLDG 291
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 34/65 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G+ G GRDG G G DG GR+G DG G+DG G DG G G H G D ++
Sbjct: 243 GKDGAKGRDGQAGRNGRDGAKGRDGKDGRKGQDGQHGTDGADGRAGLDGRHGRDGRDGRN 302
Query: 89 FSDGV 93
DGV
Sbjct: 303 GLDGV 307
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+GR G DG G G+ G DG GR+G DG G+DG G++G G G G D +
Sbjct: 218 NGRDGKDGMKGQDGKNGTDGTAGRDGKDGAKGRDGQAGRNGRDGAKGRDGKDGRKGQDGQ 277
Query: 88 SFSDGV 93
+DG
Sbjct: 278 HGTDGA 283
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 6/47 (12%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKD------GLPGKDGIPGTNG 74
+G+DG PG+ G DG G++G G+PG+D G PG+DG+ G NG
Sbjct: 345 NGKDGEPGKDGRDGKDGKDGKPGVPGRDGKDGQPGAPGRDGMNGKNG 391
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 33/65 (50%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G GRDG G G DG GRNG DG G+DG G+ G G +GT G D +
Sbjct: 233 NGTDGTAGRDGKDGAKGRDGQAGRNGRDGAKGRDGKDGRKGQDGQHGTDGADGRAGLDGR 292
Query: 88 SFSDG 92
DG
Sbjct: 293 HGRDG 297
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 32/66 (48%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
GR G +GRDG G G DG G +G G GKDG G+DG G NG G D
Sbjct: 211 AEGRDGQNGRDGKDGMKGQDGKNGTDGTAGRDGKDGAKGRDGQAGRNGRDGAKGRDGKDG 270
Query: 87 KSFSDG 92
+ DG
Sbjct: 271 RKGQDG 276
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 25/39 (64%)
Query: 36 RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
R+G GEPG DG G++G DG PG G GKDG PG G
Sbjct: 344 RNGKDGEPGKDGRDGKDGKDGKPGVPGRDGKDGQPGAPG 382
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLD------------GIPGRNGMDGIPGKDGLPG 65
D GR G G DGRDGL G+ G G GR+G +G GKDG+ G
Sbjct: 169 DAGRDGRRGEKGDTGRDGRDGLDGKEGKAGKNGKNGKNGARGAEGRDGQNGRDGKDGMKG 228
Query: 66 KDGIPGTNGT 75
+DG GT+GT
Sbjct: 229 QDGKNGTDGT 238
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 36/80 (45%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR GR G GR+G G G DG GR G DG G DG G+ G+ G +G
Sbjct: 239 AGRDGKDGAKGRDGQAGRNGRDGAKGRDGKDGRKGQDGQHGTDGADGRAGLDGRHGRDGR 298
Query: 79 HYAMGADTKSFSDGVLPSVQ 98
G D DG+ P V+
Sbjct: 299 DGRNGLDGVDGRDGLSPVVK 318
>gi|449485551|ref|XP_002190767.2| PREDICTED: collagen alpha-1(VIII) chain-like [Taeniopygia guttata]
Length = 558
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP--GKDGIPGTNGTK 76
IG G+DG+PG+PG G G G+ G+PG GLP GK G PG G +
Sbjct: 310 IGKPGQDGIPGQPGFPGGKGEQGLPGLPGSPGLPGIGKPGFPGPKGER 357
>gi|402901580|ref|XP_003913724.1| PREDICTED: complement C1q and tumor necrosis factor-related
protein 9A isoform 1 [Papio anubis]
gi|402901582|ref|XP_003913725.1| PREDICTED: complement C1q and tumor necrosis factor-related
protein 9A isoform 2 [Papio anubis]
Length = 333
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 3 RVQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG 62
R+ L +E+ + S G G+PG PG +G+PGR+G DG G G
Sbjct: 2 RIWWFLLAIEI--------CTGNISSQNTCRQGHPGIPGNPGHNGLPGRDGRDGAKGDKG 53
Query: 63 ---LPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
PG+ G PG +GT + GAD K + G+
Sbjct: 54 DAGEPGRPGSPGKDGTSGEKGERGADGKVEAKGI 87
>gi|225868100|ref|YP_002744048.1| collagen-binding collagen-like surface-anchored protein FneF
[Streptococcus equi subsp. zooepidemicus]
gi|225701376|emb|CAW98441.1| putative collagen-binding collagen-like surface-anchored protein
FneF [Streptococcus equi subsp. zooepidemicus]
Length = 750
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 35/73 (47%), Gaps = 18/73 (24%)
Query: 29 GRIGLDGRDGLPG------------------EPGLDGIPGRNGMDGIPGKDGLPGKDGIP 70
GR G +G+DG PG EPG+ G G NG DG PG+DG GKDG P
Sbjct: 417 GRDGQNGKDGQPGPKGEKGDPGKPGERGPKGEPGIPGPRGENGKDGAPGRDGQNGKDGQP 476
Query: 71 GTNGTKTDHYAMG 83
G G K D G
Sbjct: 477 GPKGEKGDPGQQG 489
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 34/68 (50%), Gaps = 18/68 (26%)
Query: 29 GRIGLDGRDGLPG------------------EPGLDGIPGRNGMDGIPGKDGLPGKDGIP 70
GR G +G+DG PG EPG+ G G NG DG PG+DG GKDG P
Sbjct: 369 GRDGQNGKDGQPGPKGEKGDPGKPGERGPKGEPGIPGPRGENGKDGAPGRDGQNGKDGQP 428
Query: 71 GTNGTKTD 78
G G K D
Sbjct: 429 GPKGEKGD 436
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 29/51 (56%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G G GEPG+ G G NG DG PG+DG GKDG PG G K D
Sbjct: 338 KGDPGKPGERGPKGEPGIPGPRGENGKDGAPGRDGQNGKDGQPGPKGEKGD 388
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G GLPG G GIPG G DG KDG PG DG PG G K D
Sbjct: 294 GERGERGPQGLPGPKGEPGIPGPKGEDG---KDGAPGHDGQPGPKGEKGD 340
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 27 ISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
I G G +G+DG P G+ G DG PG G G PG+ G+PG G PG +G
Sbjct: 451 IPGPRGENGKDGAPGRDGQNGKDGQPGPKGEKGDPGQQGIPGPKGDPGRDGK 502
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTKTDHYAMG 83
I G G DG+DG PG DG PG G G PGK G G+ GIPG G A G
Sbjct: 313 IPGPKGEDGKDGA---PGHDGQPGPKGEKGDPGKPGERGPKGEPGIPGPRGENGKDGAPG 369
Query: 84 ADTKSFSDG 92
D ++ DG
Sbjct: 370 RDGQNGKDG 378
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
GR G +G+DG PG G G PG+ G IPG G PG+DG G G + + G
Sbjct: 465 GRDGQNGKDGQPGPKGEKGDPGQQG---IPGPKGDPGRDGKDGEKGERGEQGPQGE 517
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTKTDHY 80
I G G +G+DG PG + G DG PG G G PGK G G+ GIPG G
Sbjct: 403 IPGPRGENGKDGAPGRDGQNGKDGQPGPKGEKGDPGKPGERGPKGEPGIPGPRGENGKDG 462
Query: 81 AMGADTKSFSDG 92
A G D ++ DG
Sbjct: 463 APGRDGQNGKDG 474
>gi|198418418|ref|XP_002119477.1| PREDICTED: similar to Collagen alpha-2(IV) chain precursor
(Canstatin) [Ciona intestinalis]
Length = 1754
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GLDGRDGL GEPG DG PG +G+DG PG+ G GK G+
Sbjct: 1216 GLDGRDGLNGEPGEDGAPGFDGLDGRPGRRGEKGKPGV 1253
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 29/48 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
SGR G G GLPG PG G PG G GIPG+ GLPGKDG G G
Sbjct: 1298 FSGRPGPVGEQGLPGFPGPKGEPGLPGGVGIPGRQGLPGKDGQEGFTG 1345
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 10 VLEVHDRRDIGRAIST--VISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLP 64
V E + + GR+I +++G G G+ GLPG PGL G+PG G G G+ GL
Sbjct: 1422 VGEPGFKGEPGRSIEPTDLVAGPKGNTGKPGLPGSPGLIGRTGLPGLQGFKGDQGERGLD 1481
Query: 65 GKDGIPGTNGTKTD 78
G+DGIPG++G + +
Sbjct: 1482 GRDGIPGSHGQRGN 1495
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN-----GTKTDHYAMG 83
G G G G PG G G PG NG DG PG+DGLPG+ G+PG G K + G
Sbjct: 376 GSPGSPGNVGKPGTAGPHGQPGINGFDGPPGEDGLPGQIGLPGNPGVPGVGEKGEPGQKG 435
Query: 84 ADTKSFSDGV 93
+ K DGV
Sbjct: 436 RNGKHGQDGV 445
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK--TDHYAM 82
G G GR G GE GL G PG G G+PG G+PG+ G+PG +G + T H +
Sbjct: 1294 GPAGFSGRPGPVGEQGLPGFPGPKGEPGLPGGVGIPGRQGLPGKDGQEGFTGHQGL 1349
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I GR GL G+DG G G G+PG GM G+PG++GL DG+PG G
Sbjct: 1328 IPGRQGLPGKDGQEGFTGHQGLPGIKGMPGLPGQNGL---DGVPGIQG 1372
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G +G+ GR GLPG+ G +G G G+ GI G GLPG++G+ G G + D
Sbjct: 1322 LPGGVGIPGRQGLPGKDGQEGFTGHQGLPGIKGMPGLPGQNGLDGVPGIQGD 1373
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 35/74 (47%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G T + G G DG G GEPGL G+PG G+ G G+ GLPG G+ G G
Sbjct: 749 GEQGKTGVEGVTGDDGERGDTGEPGLPGVPGEQGLRGPQGESGLPGVPGLSGERGVTGIR 808
Query: 80 YAMGADTKSFSDGV 93
G + DGV
Sbjct: 809 GGNGMKGEKGKDGV 822
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
+GR G G G+DG+PG +GM G+ GK G PGK G G G K + ++
Sbjct: 984 NGRTGPKGSDGIDGLPGLDGMSGLYGKKGAPGKQGATGPQGFKGEKGSL 1032
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+R IG++ G +G+ G GLPG G DG+ G G DG PG DGL DG PG G
Sbjct: 1190 ERGAIGQSGPKGYPGLVGMKGGRGLPGLDGRDGLNGEPGEDGAPGFDGL---DGRPGRRG 1246
Query: 75 TK 76
K
Sbjct: 1247 EK 1248
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGR---------NGMDGIPGKDGLPGKDGI 69
IG T + G G G+ G+ GE G G+PGR NG G+ G+ GLPG G+
Sbjct: 1122 IGETGRTGLPGPSGFKGQKGMLGEAGQPGLPGREGSPGLHGENGPKGMQGRRGLPGLSGL 1181
Query: 70 PGTNGTKTDHYAMG 83
G +G K + A+G
Sbjct: 1182 DGPSGQKGERGAIG 1195
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 27 ISGRIGLDGRDGLPG-----EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G+IGL G G+PG EPG G G++G DG+PG G G G PG +G
Sbjct: 410 LPGQIGLPGNPGVPGVGEKGEPGQKGRNGKHGQDGVPGLPGEEGPRGFPGISG 462
>gi|403268583|ref|XP_003926351.1| PREDICTED: collagen alpha-1(VII) chain [Saimiri boliviensis
boliviensis]
Length = 2939
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G G GL G PGL G+PG G G IPG G PGKDG+PG G K D MG
Sbjct: 2558 GSKGEPGDKGLAGSPGLRGLPGPQGQPGAVGIPGDPGSPGKDGVPGIRGEKGDIGFMG 2615
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GLDGR GL G+PG G PG NG G K G PG+DG+PG G +
Sbjct: 1771 GSPGLDGRSGLDGKPGAPGSPGLNGATG---KAGDPGRDGLPGLRGEQ 1815
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 18/87 (20%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGKDGL------------PG 65
S + GR GLDG+ G PG PGL+G PGR+G+ G+ G+ G PG
Sbjct: 1772 SPGLDGRSGLDGKPGAPGSPGLNGATGKAGDPGRDGLPGLRGEQGPPGPSGPPGLLGKPG 1831
Query: 66 KDGIPGTNGTKTDHYAMGADTKSFSDG 92
+DG PG NG + G D + G
Sbjct: 1832 EDGKPGLNGKNGEPGDPGEDGRKGEKG 1858
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 25/50 (50%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
ST+ G G G DG PG PG G G G G+ G GLPG G PG
Sbjct: 1289 STIAKGERGFPGADGRPGSPGRPGTHGTPGAPGLKGSPGLPGPRGQPGEQ 1338
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GLDG G PG PGL G G G G+PG+ G PGK+G+ G G +
Sbjct: 2625 VKGACGLDGEKGNKGEAGPPGRPGLAGHKGETGEPGVPGQLGSPGKEGLIGPKGDR 2680
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ GL+G++G PG+PG DG G G G PG++G G G G G
Sbjct: 1834 GKPGLNGKNGEPGDPGEDGRKGEKGESGAPGREGRDGPKGERGPPG 1879
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 33/68 (48%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
D+G + G G G +G PG+ G G PG G+ G PG GLPG G PG G
Sbjct: 2532 DMGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGLAGSPGLRGLPGPQGQPGAVGIPG 2591
Query: 78 DHYAMGAD 85
D + G D
Sbjct: 2592 DPGSPGKD 2599
>gi|281353349|gb|EFB28933.1| hypothetical protein PANDA_013264 [Ailuropoda melanoleuca]
Length = 1608
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G+DG PG PG G PG G G G+ G+PG G+PGT G K D
Sbjct: 1473 AAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGVPGMRGLPGTKGEKGD 1526
>gi|351709944|gb|EHB12863.1| Collagen alpha-1(XVI) chain [Heterocephalus glaber]
Length = 1606
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 30/54 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G++G PG PG G PG G G G+ GLPG G+PGT G K D
Sbjct: 1471 AAAPGRPGPPGKEGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGD 1524
>gi|313221851|emb|CBY38921.1| unnamed protein product [Oikopleura dioica]
Length = 888
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGKDGIPGTNG 74
G DG DGLPG+ G DG PGR+G + G+PGK G PGK IPG G
Sbjct: 632 GRDGADGLPGQAGRDGKPGRDGPAGLKGLPGKQGEPGK-CIPGQKG 676
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G DG G G G DG+PG+ G DG PG+DG G G+PG G
Sbjct: 620 GQRGNDGAPGPDGRDGADGLPGQAGRDGKPGRDGPAGLKGLPGKQG 665
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 26/48 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G+ G G PG+ G PG G G G+ GLPG DG G NG K
Sbjct: 742 GEPGSPGKKGQKGSPGIQGRPGLQGPQGPIGEPGLPGADGKKGANGQK 789
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 27/57 (47%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G G G PGE G DG PG G G+PG G G+ G G G K + G D
Sbjct: 676 GPCGKKGEAGTPGEDGFDGHPGNPGKPGLPGPVGSVGRPGNEGPKGAKGEQGIQGPD 732
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 25/45 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
I GR GL G G GEPGL G G+ G +G G G PGK G G
Sbjct: 758 IQGRPGLQGPQGPIGEPGLPGADGKKGANGQKGPRGKPGKPGASG 802
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G DG+ G G PG DG G +G+ G G+DG PG+DG G G
Sbjct: 616 VGPDGQRGNDGAPGPDGRDGADGLPGQAGRDGKPGRDGPAGLKG 659
>gi|426221992|ref|XP_004005189.1| PREDICTED: complement C1q subcomponent subunit C [Ovis aries]
Length = 242
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 26/39 (66%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+PG PGL G PG++G DG+PG G PG PGT G K
Sbjct: 31 GIPGMPGLPGAPGKDGYDGLPGPKGEPGIPATPGTRGPK 69
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 17 RDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---------GKDGLPGKD 67
R +G T G G+ G G PG+ G DG+PG G GIP G+ G PG
Sbjct: 19 RTLGGQTGTHCYGIPGMPGLPGAPGKDGYDGLPGPKGEPGIPATPGTRGPKGQKGDPGTP 78
Query: 68 GIPGTNG 74
G PG NG
Sbjct: 79 GYPGKNG 85
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT----KTDHYAM 82
I G G G G+PG G PG+NG G PG G PG G PG G K H ++
Sbjct: 59 IPATPGTRGPKGQKGDPGTPGYPGKNGPMGTPGIPGAPGTVGPPGEPGVEGRYKQKHQSV 118
Query: 83 GADTKSFSDGVLPSVQRAIAAGLVI 107
+ T+ G P + VI
Sbjct: 119 FSVTR--QTGQFPEANSLVKFNEVI 141
>gi|92097580|gb|AAI14894.1| C1QC protein [Bos taurus]
Length = 274
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 26/39 (66%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+PG PGL G PG++G DG+PG G PG PGT G K
Sbjct: 63 GIPGMPGLPGAPGKDGYDGLPGPKGEPGIPAAPGTRGPK 101
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 26/48 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G DG DGLPG G GIP G G G+ G PG G PG NG
Sbjct: 70 LPGAPGKDGYDGLPGPKGEPGIPAAPGTRGPKGQKGDPGTPGYPGKNG 117
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT----KTDHYAM 82
I G G G G+PG G PG+NG G PG G PG G PG G K H ++
Sbjct: 91 IPAAPGTRGPKGQKGDPGTPGYPGKNGPMGTPGIPGAPGTMGPPGEPGVEGRYKQKHQSV 150
Query: 83 GADTKSFSDGVLPSVQRAIAAGLVIYR 109
+ T+ +VQ A LV +
Sbjct: 151 FSVTRQ-------TVQFPEANSLVKFN 170
>gi|17551374|ref|NP_510617.1| Protein COL-186 [Caenorhabditis elegans]
gi|3875457|emb|CAA92150.1| Protein COL-186 [Caenorhabditis elegans]
Length = 333
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 13/64 (20%)
Query: 29 GRIGLDGRDGLPGEPG-------------LDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G +G +GR G+PG PG L+G PG++G+ G+PG G PG DG PG +G+
Sbjct: 228 GPVGPEGRPGIPGLPGGKGIPGKLIEVAGLEGPPGQSGLPGMPGLQGKPGNDGYPGRDGS 287
Query: 76 KTDH 79
D
Sbjct: 288 PGDQ 291
>gi|268322308|emb|CBH32885.1| alpha 1 type IV collagen [Haliotis tuberculata]
Length = 1777
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 37/56 (66%), Gaps = 9/56 (16%)
Query: 32 GLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKD------GIPGTNGTKTD 78
GLDG DGLPG+PG LDG+PGR G+ G+ G +GLPG G+PG +G K +
Sbjct: 946 GLDGEDGLPGQPGEAGLDGLPGRPGLAGMKGVNGLPGSPGTDGLTGLPGASGAKGE 1001
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G +G+ G DGLPG+PGL G G +G+ G+PG G G DG+PG NG +
Sbjct: 1110 GEMGIPGLDGLPGDPGLQGRDGNDGLPGLPGLKGQRGLDGLPGLNGEQ 1157
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 32 GLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G DG DGLPG PGL DG+PG NG G G DGLPG G+PG G + G D
Sbjct: 1128 GRDGNDGLPGLPGLKGQRGLDGLPGLNGEQGGLGVDGLPGTPGLPGLTGDRGQEGLPGID 1187
Query: 86 TK 87
+
Sbjct: 1188 GE 1189
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 17/72 (23%)
Query: 24 STVISGRIGLDGRDGLPGEPGL-----------------DGIPGRNGMDGIPGKDGLPGK 66
+ + G GL G DG PG PGL G+PG +G+ G+PG G PG+
Sbjct: 1294 TPALPGLPGLPGEDGFPGRPGLQGPKGESAFSLPGLKGLPGVPGLDGLPGLPGDRGRPGQ 1353
Query: 67 DGIPGTNGTKTD 78
G+PG G K D
Sbjct: 1354 PGLPGLMGMKGD 1365
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 27/43 (62%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G PG +G GR G DG+PG +GL G DG PGT G+ D A G
Sbjct: 1467 GRPGFEGPRGREGDDGLPGLNGLRGTDGFPGTPGSAGDQGAPG 1509
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 30/60 (50%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D D GR G G G G PGE GL G GR+G G+PG+DG PG G G G
Sbjct: 547 DNGDTGRQGQDGFPGLPGFSGEKGQPGEFGLSGPNGRSGEPGVPGRDGAPGFPGAKGEPG 606
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 33/62 (53%), Gaps = 15/62 (24%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP------------GKDGLPGKDGIPGTNG 74
G +GLDG LPG PGL GIPGR G DG+ G GLPG +G+PG G
Sbjct: 749 FEGELGLDG---LPGMPGLSGIPGRKGDDGVAGLPGGQGARGSKGYPGLPGDEGLPGQPG 805
Query: 75 TK 76
K
Sbjct: 806 LK 807
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMD---GIPGKDGLPGKDGIPGT 72
G GL R G+PGE G+ GIPG G+ G+PG+ G PG DG PGT
Sbjct: 826 GEPGLTPRQGIPGERGIAGIPGEPGVGGAVGLPGQPGTPGPDGYPGT 872
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 31/50 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GLDG G GE GLDG+PG G+ GIPG+ G G G+PG G +
Sbjct: 737 LPGIPGLDGAPGFEGELGLDGLPGMPGLSGIPGRKGDDGVAGLPGGQGAR 786
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMD---GIPGKDGLPGKDGIPGTN 73
GRIG G G PG PG +G GR G+ G+PG GLPG GIPG +
Sbjct: 370 GRIGTPGPKGSPGSPGFNGEEGRRGLPGLTGLPGSQGLPGLPGIPGMS 417
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 26/43 (60%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
+GR G G DG+PG P L G+PG G DG PG+ GL G G
Sbjct: 1278 APAGRPGPPGVDGIPGTPALPGLPGLPGEDGFPGRPGLQGPKG 1320
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 34 DGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPGKDGIPGTNGTKT 77
D G PG PG+DGIPG G+ G+PG+DG PG+ G+ G G
Sbjct: 1277 DAPAGRPGPPGVDGIPGTPALPGLPGLPGEDGFPGRPGLQGPKGESA 1323
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 31/58 (53%), Gaps = 12/58 (20%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMD------------GIPGKDGLPGKDGIPGT 72
+SG GL G +GL G PGLDG PG+ G D G+ G PG DGIPGT
Sbjct: 1237 LSGPTGLRGENGLQGRPGLDGEPGQPGFDGGPGLPGLNGEDAPAGRPGPPGVDGIPGT 1294
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
T + G G+DGRDG PG G DG G+ G+ G+ G+ G G +G PG G + D
Sbjct: 1366 TALPGLPGVDGRDGEPGRVGEDGESGQPGIPGVRGRRGDDGSNGFPGRTGERGD 1419
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 29/47 (61%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR GL G GLPG G+ G GR G GIPG DGLPG G+ G +G
Sbjct: 1086 GREGLPGLSGLPGPDGVPGPKGRIGEMGIPGLDGLPGDPGLQGRDGN 1132
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPG------EPGL---DGIPGRNGMDGIPGKDGLPGKDG 68
D G + G +G DG GLPG EPGL GIPG G+ GIPG+ G+ G G
Sbjct: 797 DEGLPGQPGLKGLVGDDGLPGLPGLQGPRGEPGLTPRQGIPGERGIAGIPGEPGVGGAVG 856
Query: 69 IPGTNGTK-TDHY 80
+PG GT D Y
Sbjct: 857 LPGQPGTPGPDGY 869
>gi|384110824|gb|AFH66979.1| ficolin, partial [Enhydris polylepis]
Length = 165
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 21 RAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPGTNG 74
R IS +I L G+ G+PG PG+ GI G G++G PG GL G+ DGIPG G
Sbjct: 37 RTEHQCISDKIILQGQPGIPGIPGVPGINGSEGLNGDPGPQGLSGEIGFDGIPGVAG 93
>gi|126338318|ref|XP_001373793.1| PREDICTED: collagen alpha-4(IV) chain-like [Monodelphis domestica]
Length = 1686
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG--IPGTN 73
+ + G + I GR G G DG PG PG +GIPG+NG+ G G GLPG G IPG
Sbjct: 548 KGEKGDMVIARIKGRKGEKGYDGPPGYPGQEGIPGQNGLPGERGSPGLPGNRGGAIPGAQ 607
Query: 74 GT 75
G+
Sbjct: 608 GS 609
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG-KDGIPGTN 73
D+ DI G G GR G PGE G G PG G+ G PG DGLPG + G PG
Sbjct: 955 DQGDISIIPRKGEKGEPGPPGRLGFPGEKGDKGTPGTQGIKGFPGGDGLPGFQKGEPGNR 1014
Query: 74 G 74
G
Sbjct: 1015 G 1015
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GE G DG PG G +GIPG++GLPG+ G PG G +
Sbjct: 564 GEKGYDGPPGYPGQEGIPGQNGLPGERGSPGLPGNR 599
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+ G GL G G PG PGL G+ G G+ G PG G+PG GI G+ G + D +G
Sbjct: 758 VYGLPGLPGHIGPPGLPGLKGLRGDPGLPGRPGTTGVPGFPGIKGSQGREGDAGPLG 814
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G G PG PG+ G PG G G+ G GLPG +G+PG G K + G +
Sbjct: 1136 GHPGEAGDPGPPGVRGDPGTPGPKGMKGSSGLPGLNGLPGLKGQKGSKGSSGLN 1189
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---------GLPGKDGIPGTNGTK 76
G G G GLPG PG G GR G G+PG+ GLPG+ G PG+ G K
Sbjct: 894 GSQGPKGVQGLPGIPGFPGERGRKGQSGLPGRKGDPGEEGPCGLPGEPGEPGSKGEK 950
>gi|71988210|ref|NP_001022663.1| Protein EMB-9, isoform b [Caenorhabditis elegans]
gi|42733226|emb|CAE52901.2| Protein EMB-9, isoform b [Caenorhabditis elegans]
Length = 1502
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G G +G DG PG PG G PG G DG PG G+PG+DG+ G G + +H
Sbjct: 658 AGAPGQNGMDGYPGAPGDQGYPGSPGQDGYPGPSGIPGEDGLVGFPGLRGEH 709
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 28/47 (59%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G GL G DGLPG G +GIPG NG DG PG GL G G G NG
Sbjct: 103 GHPGLQGLDGLPGLKGEEGIPGCNGTDGFPGMPGLAGPPGQSGQNGN 149
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I+G GL G GLPG PG DGIPG+ G++G G+DG PG G PG G +
Sbjct: 848 ITGMPGLKGESGLPGLPGRQGNDGIPGQPGLEGECGEDGFPGSPGQPGYPGQQ 900
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 20 GRAISTVISGRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR + I G+ GL+G DG PG PG G PG+ G +G G G+PG++G+PG G
Sbjct: 865 GRQGNDGIPGQPGLEGECGEDGFPGSPGQPGYPGQQGREGEKGYPGIPGENGLPGLRG 922
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK------------DGLPGKD 67
G A + + G G GRDGLPG PG G G NG DG PG+ DG G+D
Sbjct: 581 GDAGAAGLPGPDGYPGRDGLPGTPGYPGEAGMNGQDGAPGQPGSRGESGLVGIDGKKGRD 640
Query: 68 GIPGTNG 74
G PGT G
Sbjct: 641 GTPGTRG 647
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 9/50 (18%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGT 72
GR G +G G PG+PG+ DG PGR+G+DG+PG+ PG++G+PG
Sbjct: 1134 GRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGR---PGREGLPGP 1180
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G DG G PG PG +G PG G+ G+PG+ G G +G PG G
Sbjct: 1099 LEGDCGEDGYPGAPGAPGSNGYPGERGLPGVPGQQGRSGDNGYPGAPG 1146
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G G GLPG+ GL G PG+ G G PG DG PG G+ G G D GA +
Sbjct: 1195 NGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLSGMPGHGGDQGFQGAAGR 1254
Query: 88 SFSDGV 93
+ + G+
Sbjct: 1255 TGNPGL 1260
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGT 72
R + ++ + G G +G PGE G G+PG NG+ G PGK G PG DG PG
Sbjct: 1174 REGLPGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGP 1233
Query: 73 NG 74
G
Sbjct: 1234 PG 1235
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---------GIPGTNG 74
+ + G G G DG+PG+PGL+G G +G G PG+ G PG+ GIPG NG
Sbjct: 857 ESGLPGLPGRQGNDGIPGQPGLEGECGEDGFPGSPGQPGYPGQQGREGEKGYPGIPGENG 916
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG---KDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G +G G G PG DG PGR+G+ G PG + G+ G+DG PG G++ + +G D
Sbjct: 575 GYPGPNGDAGAAGLPGPDGYPGRDGLPGTPGYPGEAGMNGQDGAPGQPGSRGESGLVGID 634
Query: 86 TKSFSDGV 93
K DG
Sbjct: 635 GKKGRDGT 642
Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 31/58 (53%), Gaps = 12/58 (20%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGI------------PGKDGLPGKDGIPGTNG 74
G G G+DG PG G G PG+NGMDG PG+DG PG GIPG +G
Sbjct: 641 GTPGTRGQDGGPGYSGEAGAPGQNGMDGYPGAPGDQGYPGSPGQDGYPGPSGIPGEDG 698
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G+ G DG G PG PG++G+P G++G G+DG PG G PG+NG
Sbjct: 1075 LDGKRGHDGLPGAPGVPGVEGVP---GLEGDCGEDGYPGAPGAPGSNG 1119
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
G +G DG PG PGL G PG++G +G PG+ GL G G G N
Sbjct: 124 GCNGTDGFPGMPGLAGPPGQSGQNGNPGRPGLSGPPGEGGVN 165
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
G PGE GL G+ G+ G DG+PG G+PG +G+PG G + GA S+G
Sbjct: 1065 GYPGERGLPGLDGKRGHDGLPGAPGVPGVEGVPGLEGDCGEDGYPGAPGAPGSNGY 1120
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 35/69 (50%), Gaps = 20/69 (28%)
Query: 27 ISGRIGLDG------RDGL-----------PGEPGLDGIPGRNGMDGIPGKDGL---PGK 66
GR GLDG R+GL PG+PG +G PG G G+PG +GL PGK
Sbjct: 1159 FPGRDGLDGLPGRPGREGLPGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGK 1218
Query: 67 DGIPGTNGT 75
G PG GT
Sbjct: 1219 AGYPGAPGT 1227
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 4 VQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI-----P 58
+ GM E DR + G G G GLPGEPG G PG +G+ G P
Sbjct: 413 IDGMPGYTEKGDRGE---------DGYPGFAGEPGLPGEPGDCGYPGEDGLPGYDIQGPP 463
Query: 59 GKDGLPGKDGIPGTNG 74
G DG G+DG PG G
Sbjct: 464 GLDGQSGRDGFPGIPG 479
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 37/83 (44%), Gaps = 26/83 (31%)
Query: 29 GRIGLDGRDGLPGEPGLD-----------------------GIPGRN---GMDGIPGKDG 62
G +G +G DG GEPGLD G PG N G G+PG DG
Sbjct: 534 GEVGFNGIDGDCGEPGLDGYPGAPGAPGAPGETGFGFPGQVGYPGPNGDAGAAGLPGPDG 593
Query: 63 LPGKDGIPGTNGTKTDHYAMGAD 85
PG+DG+PGT G + G D
Sbjct: 594 YPGRDGLPGTPGYPGEAGMNGQD 616
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 29/57 (50%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D G + +G G G DG PG PGL G+PG G G G G G G+PGT G
Sbjct: 1209 DNGLSGPPGKAGYPGAPGTDGYPGPPGLSGMPGHGGDQGFQGAAGRTGNPGLPGTPG 1265
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 31/58 (53%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D G S G GL G G PG GLDG+PG G +GIPG +G G G+PG G
Sbjct: 83 DFGDMGSKGARGDRGLPGSPGHPGLQGLDGLPGLKGEEGIPGCNGTDGFPGMPGLAGP 140
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 27/47 (57%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GLDG G PGE G DG+PG G DG PG G G+ G PG G +
Sbjct: 728 GLDGVPGYPGEHGTDGLPGLPGADGQPGFVGEAGEPGTPGYRGQPGE 774
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNG 74
G G++G+DG PG+PG G G G+DG G+DG P G+DG PG +G
Sbjct: 606 YPGEAGMNGQDGAPGQPGSRGESGLVGIDGKKGRDGTPGTRGQDGGPGYSG 656
>gi|345305978|ref|XP_003428408.1| PREDICTED: collagen alpha-1(XXII) chain-like [Ornithorhynchus
anatinus]
Length = 1453
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 29/49 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G DG PG PGL G PG G DGIPGK G G+ G+PG G +
Sbjct: 693 QGSPGKTGEDGQPGLPGLKGEPGERGEDGIPGKPGHRGEAGLPGPPGLR 741
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 37 DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
D PG PGL G+PG G G+PG PGK+G G G+K + A G
Sbjct: 1054 DCPPGAPGLPGLPGFKGDKGVPGS---PGKEGTEGKKGSKGEQGADG 1097
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLP------GKDGIPGTNGTKTD 78
G G PG+PG G PG+ G DG PG GL G+DGIPG G + +
Sbjct: 682 GFSGKPGQPGQQGSPGKTGEDGQPGLPGLKGEPGERGEDGIPGKPGHRGE 731
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGR---NGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G+ GL G G PGE G DGIPG+ G G+PG GL G G G G K D
Sbjct: 703 GQPGLPGLKGEPGERGEDGIPGKPGHRGEAGLPGPPGLRGPTGEKGDQGQKGD 755
>gi|313219711|emb|CBY30631.1| unnamed protein product [Oikopleura dioica]
Length = 518
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 15/63 (23%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---------------DGIPG 71
+ G GLDG+ GLPGE GL G G G+DG+ G+DGLPG+ +G+PG
Sbjct: 238 LRGPAGLDGKPGLPGEQGLKGAIGAEGLDGLDGQDGLPGERGPRGDIGPPGKPGANGMPG 297
Query: 72 TNG 74
NG
Sbjct: 298 ANG 300
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 32 GLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GLDG+DGLPGE G G PG+ G +G+PG +G+ GK G G G D
Sbjct: 267 GLDGQDGLPGERGPRGDIGPPGKPGANGMPGANGINGKPGERGGQGPMGDS 317
>gi|405974545|gb|EKC39180.1| Collagen alpha-1(IX) chain [Crassostrea gigas]
Length = 960
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRN---------GMDGIPGKDGLPGK 66
R D G + G G DGR G+ G PG GIPGR+ G DGIPGKDG+PGK
Sbjct: 469 RGDRGESGERGEQGPSGNDGRPGVDGMPGAAGIPGRDGKMGPKGDSGADGIPGKDGVPGK 528
Query: 67 DGIPGTNGTK 76
G G G K
Sbjct: 529 HGKHGERGEK 538
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+ G G G+PG+DG+ G G+ G PG G PGKDG PG GT+
Sbjct: 631 GVPGLKGSHGDPGMDGMQGDQGVAGAPGPRGEPGKDGRPGQPGTQ 675
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%)
Query: 9 QVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
++ ++ D G+ + + G+ G G+DGLPGE G G G +G G PGK GL G G
Sbjct: 247 ELEDIDDSDSQGKQGVSGLPGKPGTPGQDGLPGERGPAGKDGNDGRPGEPGKPGLLGFQG 306
Query: 69 IPGTNGTK 76
PG G +
Sbjct: 307 QPGERGER 314
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
SG G G G PG PG+ G PG+ G G G+ G+PGK G+PG
Sbjct: 743 SGERGTPGSTGAPGVPGISGAPGQQGPPGHRGQPGMPGKPGLPG 786
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 8 LQVLEVH-----DRRDIGRAISTV----ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP 58
LQ L +H RD + + G+ G+ G G PG PG DG+PG G G
Sbjct: 228 LQWLAMHCDPTKPSRDSCEELEDIDDSDSQGKQGVSGLPGKPGTPGQDGLPGERGPAGKD 287
Query: 59 GKDGLPGKDGIPG 71
G DG PG+ G PG
Sbjct: 288 GNDGRPGEPGKPG 300
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 29 GRIGLDGRDGLPGEP------GLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G G DG DG PGEP G G PG G G+ GKDG G+ G PG +G+
Sbjct: 282 GPAGKDGNDGRPGEPGKPGLLGFQGQPGERGERGLNGKDGSAGEPGKPGKDGS 334
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 28/50 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G+ G G+PGEPG G PG G G PG G G G+PG G+ D
Sbjct: 592 GRSGVPGSPGIPGEPGQPGRPGEMGDQGDPGDVGPRGLPGVPGLKGSHGD 641
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGR---------NGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G+ G DGR G PG+PGL G G+ NG DG G+ G PGKDG G G + +
Sbjct: 284 AGKDGNDGRPGEPGKPGLLGFQGQPGERGERGLNGKDGSAGEPGKPGKDGSVGPRGLQGE 343
Query: 79 H 79
Sbjct: 344 E 344
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 33/67 (49%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G G G GE G G G +G DG PG DG+PG GIPG +G GAD
Sbjct: 459 LPGEKGSQGLRGDRGESGERGEQGPSGNDGRPGVDGMPGAAGIPGRDGKMGPKGDSGADG 518
Query: 87 KSFSDGV 93
DGV
Sbjct: 519 IPGKDGV 525
>gi|426215890|ref|XP_004002202.1| PREDICTED: collagen alpha-1(XXIV) chain [Ovis aries]
Length = 1708
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
SG+ G+ G GLPG G+ G G G+ G PGK GLPGK G+PG G+
Sbjct: 1269 SGKPGIPGLPGLPGPKGMQGYHGAEGISGNPGKIGLPGKHGLPGIRGS 1316
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTKTD 78
G +G G G GEPGL G PG G +G+ GKDGL PG G+PG +G K +
Sbjct: 1021 TKGDVGPVGSVGAAGEPGLRGEPGAPGEEGLQGKDGLKGNPGGKGLPGEDGEKGE 1075
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
E + D+G S +G GL G G PGE GL G++G+ G PG GLPG+DG
Sbjct: 1018 EPGTKGDVGPVGSVGAAGEPGLRGEPGAPGEEGLQ---GKDGLKGNPGGKGLPGEDG 1071
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G G GL GE G +G G+ G G GK G+PG G+PG G + H A G
Sbjct: 1240 GEPGDQGEQGLKGERGSEGPKGKKGAPGPSGKPGIPGLPGLPGPKGMQGYHGAEG 1294
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGKDGIPGTNGTK 76
+ G GL G GLPG G GIPG G G PG+ GL G DG PG G +
Sbjct: 559 MQGVKGLKGHPGLPGLQGEQGIPGFTGNIGSRGYPGRQGLAGPDGNPGPKGVR 611
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D G + +SG G G GL G PG+ G+ G+ G PG GL G+ GIPG G
Sbjct: 532 DPGFSPDQALSGEKGDPGLSGLTGPPGMQGV---KGLKGHPGLPGLQGEQGIPGFTGN 586
>gi|341877801|gb|EGT33736.1| CBN-EMB-9 protein [Caenorhabditis brenneri]
Length = 1759
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 32/52 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G G G GLPG+ GL G PG+ G G PG+DG PG+ G+PGT G D
Sbjct: 1452 NGYPGEKGYPGLPGDNGLPGPPGKAGYPGSPGQDGYPGQPGLPGTPGNGGDQ 1503
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGM---------DGIPGKDGLPGKDGIPGTNGTKT 77
G+ G+ G G+PGEPG+ G PG G+ DGIPG G PG DG+PG G
Sbjct: 1302 TPGQYGMPGLPGVPGEPGVTGYPGERGLPGIDGKRGHDGIPGAPGNPGLDGVPGLEGDCG 1361
Query: 78 DHYAMGADTKSFSDGV 93
D GA S+G
Sbjct: 1362 DDGYPGAPGAPGSNGY 1377
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G G +G DG PG PG G PG G DG PG +G PG+DG+ G G + +H
Sbjct: 915 AGAPGQNGMDGYPGAPGDQGYPGAPGQDGYPGPNGTPGEDGLVGFPGLRGEH 966
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG---KDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G G G G PG DG PGR+G+ G PG + GLPG+DG+PG GT+ + +G D
Sbjct: 832 GYPGPKGDAGAAGLPGPDGYPGRDGLPGTPGYPGEAGLPGQDGLPGLPGTRGESGLVGID 891
Query: 86 TKSFSDGVL 94
K DG +
Sbjct: 892 GKRGRDGPV 900
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK------DGLPGKDGIPGTNGTKTD 78
G +G G DG PG G G PG+NGMDG PG G PG+DG PG NGT +
Sbjct: 898 GPVGPRGNDGAPGYRGEAGAPGQNGMDGYPGAPGDQGYPGAPGQDGYPGPNGTPGE 953
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK------DGLPGKDGIPGTNGTKTDHY 80
+ G G DG G PG PG +G PG G+ G+PG+ +G PG+ G PG G + D
Sbjct: 1356 LEGDCGDDGYPGAPGAPGSNGYPGERGLPGVPGQQGRSGDNGFPGQPGQPGIKGPRGDDG 1415
Query: 81 AMGAD 85
G D
Sbjct: 1416 FPGRD 1420
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 35 GRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G+DGLPG EPG DG+PG G DG+PG G PG+ G PG G +
Sbjct: 985 GQDGLPGYNGEPGADGLPGLPGADGLPGLAGEPGEPGQPGFRGQPGE 1031
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP------GKDGLPGKDGIPGTNGTKTDHY 80
G++G +G G PG PG +G+PG G DG+P G DG PG G PG GT D
Sbjct: 1153 YPGQMGREGEKGYPGVPGENGLPGLRGQDGLPGLKGENGVDGQPGYPGSPGQLGTPGDVG 1212
Query: 81 AMGADTKSFSDGV 93
GA ++ +G+
Sbjct: 1213 YPGAPGENGDNGL 1225
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 4 VQGMLQVLEVHDRRDIGRAISTVISGR---IGLDGRDGLPGEPGLDGIPGRNGMDGIPGK 60
QG+ L + R G G GL G +GLPG PG G PG G DG PG+
Sbjct: 1431 FQGLPGPLAMEIRNPPGLPGDNGYPGEKGYPGLPGDNGLPGPPGKAGYPGSPGQDGYPGQ 1490
Query: 61 DGLPGKDGIPGTNGTK 76
GLPG PG G +
Sbjct: 1491 PGLPG---TPGNGGDQ 1503
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNGTK 76
+ G G+DG+ G PG PG G PG G G PG+ +GLPG+DG PG G
Sbjct: 1186 LKGENGVDGQPGYPGSPGQLGTPGDVGYPGAPGENGDNGLPGRDGQPGLRGEN 1238
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G+ G G +G PG+PG GI G G DG PG+DGL DG+PG G +
Sbjct: 1386 VPGQQGRSGDNGFPGQPGQPGIKGPRGDDGFPGRDGL---DGLPGRPGFQ 1432
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G+ G G DGL G PGL+G PG G G+P GLPG G PG G + G D K
Sbjct: 1279 AGQNGYPGLDGLSGGPGLNGEPGTPGQYGMP---GLPGVPGEPGVTGYPGERGLPGIDGK 1335
Query: 88 SFSDGV 93
DG+
Sbjct: 1336 RGHDGI 1341
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Query: 29 GRIGLDGRDGLPG-----EPGLDGIPGRNGMDGIP---GKDGLPGKDGIPGT 72
G G G DGLPG PGLDG GR+G GIP G G PG+ G PGT
Sbjct: 444 GDCGYPGEDGLPGYDIQGPPGLDGQSGRDGYPGIPGDIGDPGYPGEKGFPGT 495
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G G+DG PG+PGL G PG G G G+ G G G+PGT G
Sbjct: 1476 AGYPGSPGQDGYPGQPGLPGTPGNGGDQGFQGERGRTGHPGLPGTPG 1522
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
+ G G G DGLPG PG DG+PG G G PG+ G G+ G PG
Sbjct: 989 LPGYNGEPGADGLPGLPGADGLPGLAGEPGEPGQPGFRGQPGEPGN 1034
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 21/69 (30%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIP------------------GRNGMD---GIPGKDGLPG 65
+ G +G DG G PGE G+DG+P G NG+D G PG+DG PG
Sbjct: 753 LPGPVGPDGYPGTPGERGMDGVPGFPGLHGEPGMRGQQGEVGFNGIDGDCGEPGQDGYPG 812
Query: 66 KDGIPGTNG 74
+ G+PG G
Sbjct: 813 QPGLPGAQG 821
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 23 ISTVISGRIGLDGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPGKDGIPGTNG 74
I ++G+ G+DG GLPG+ G DG+PG G DG PG G G DG+PG G
Sbjct: 725 IINQVAGQPGVDGLPGLPGDRGADGLPGLPGPVGPDGYPGTPGERGMDGVPGFPG 779
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G GL G+DGLPG G +G+ G+ G G PG+ G PG G PG G D+ G D +
Sbjct: 1172 NGLPGLRGQDGLPGLKGENGVDGQPGYPGSPGQLGTPGDVGYPGAPGENGDNGLPGRDGQ 1231
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+SG GL+G PG PG G+PG G+ G PG G PG+ G+PG +G + GA
Sbjct: 1290 LSGGPGLNGE---PGTPGQYGMPGLPGVPGEPGVTGYPGERGLPGIDGKRGHDGIPGAPG 1346
Query: 87 KSFSDGV 93
DGV
Sbjct: 1347 NPGLDGV 1353
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG--LPGKDGIPGTNGTKTDHYAMGAD 85
G +G +G DG GEPG DG PG+ G+ G G+ G PG+ G PG G G D
Sbjct: 790 QGEVGFNGIDGDCGEPGQDGYPGQPGLPGAQGETGYGFPGQVGYPGPKGDAGAAGLPGPD 849
Query: 86 TKSFSDGVLPSVQRAIAAGL 105
DG+ + AGL
Sbjct: 850 GYPGRDGLPGTPGYPGEAGL 869
>gi|195978560|ref|YP_002123804.1| hypothetical protein Sez_1457 [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195975265|gb|ACG62791.1| collagen-like protein with amino-end fibronectin-binding domain
SclZ.10 [Streptococcus equi subsp. zooepidemicus
MGCS10565]
Length = 666
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 30/56 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G G G GEPG+ G G NG DG PG+DG GKDG PG G K D G
Sbjct: 380 KGDPGKPGERGPKGEPGIPGPRGENGKDGAPGRDGQNGKDGQPGPKGEKGDPGQQG 435
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG------KDGLPGKDGIPGTNGTKTD 78
+G G DG+ G GE G G+PG G GIPG KDG PG DG PG G K D
Sbjct: 326 TGPAGKDGKPGDKGERGPQGLPGPKGEPGIPGPKGEDGKDGAPGHDGQPGPKGEKGD 382
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G +G+DG P G+ G DG PG G G PG+ G+PG G PG +G
Sbjct: 397 IPGPRGENGKDGAPGRDGQNGKDGQPGPKGEKGDPGQQGIPGPKGDPGHDG 447
>gi|449272108|gb|EMC82196.1| Gliomedin, partial [Columba livia]
Length = 409
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 15/52 (28%)
Query: 34 DGRDGLPGEPGLDGIPGRNG---------------MDGIPGKDGLPGKDGIP 70
+G DG+PG PG G PG NG G PG+ GLPGKDG+P
Sbjct: 22 NGSDGVPGAPGQKGEPGINGKRGRIGVPGPKGDRGQKGEPGEMGLPGKDGVP 73
Score = 34.3 bits (77), Expect = 9.8, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 43 PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G DG+PG G G PG +G G+ G+PG G +
Sbjct: 22 NGSDGVPGAPGQKGEPGINGKRGRIGVPGPKGDR 55
>gi|218847780|ref|NP_001136379.1| collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV,
autosomal dominant) precursor [Xenopus (Silurana)
tropicalis]
gi|197245782|gb|AAI68784.1| Unknown (protein for MGC:188941) [Xenopus (Silurana) tropicalis]
Length = 1468
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 33/60 (55%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A SG G +G+ G GEPG +G+PG G G PG G PG +GIPG
Sbjct: 445 EPGQRGERGEAGPPGASGPAGEEGKKGANGEPGTNGVPGTPGERGTPGFRGPPGSNGIPG 504
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPG------------LDGIPGRNGMDGIPGKDGLPGKD 67
GR + I G G DG+ G G PG L+G PG G DG G DGLPG+D
Sbjct: 969 GRPGAPGIPGYKGEDGKPGTNGSPGERGPAGAPGPAGLNGAPGEGGRDGNAGADGLPGRD 1028
Query: 68 GIPGTNGTKTDHYAMGA 84
G G G + ++ + GA
Sbjct: 1029 GSHGPKGDRGENGSPGA 1045
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGI------PGRNGMD---GIPGKDGLPGKDGIPGTNGTKT 77
I G GL G GLPG PG +G PG NG D G PG+ G G+ G PG +G
Sbjct: 406 IPGAPGLAGARGLPGPPGTNGAPGLRGGPGENGKDGGKGEPGQRGERGEAGPPGASGPAG 465
Query: 78 DHYAMGADTKSFSDGV 93
+ GA+ + ++GV
Sbjct: 466 EEGKKGANGEPGTNGV 481
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGK 66
R ++G + ISG G G GLPG PG GIPG G DG PG +G PG+
Sbjct: 941 RGEVGAPGPSGISGPAGTRGIVGLPGMQGRPGAPGIPGYKGEDGKPGTNGSPGE 994
>gi|440912109|gb|ELR61708.1| Collagen alpha-1(XXIV) chain, partial [Bos grunniens mutus]
Length = 1667
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
SG+ G+ G GLPG G+ G G G+ G PGK GLPGK G+PG G+
Sbjct: 1228 SGKPGIPGLPGLPGPKGMQGYHGAEGISGNPGKIGLPGKHGLPGIRGS 1275
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTKTD 78
G +G G G GEPGL G PG G +G+ GKDGL PG G+PG +G K +
Sbjct: 980 TKGDVGPVGSVGAAGEPGLRGEPGAPGEEGLQGKDGLKGNPGGRGLPGEDGEKGE 1034
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
E + D+G S +G GL G G PGE GL G++G+ G PG GLPG+DG
Sbjct: 977 EPGTKGDVGPVGSVGAAGEPGLRGEPGAPGEEGLQ---GKDGLKGNPGGRGLPGEDG 1030
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G G GL GE G +G G+ G G GK G+PG G+PG G + H A G
Sbjct: 1199 GEPGDQGEQGLKGERGSEGPKGKKGAPGPSGKPGIPGLPGLPGPKGMQGYHGAEG 1253
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGKDGIPGTNGTK 76
+ G GL G GLPG G GIPG G G PG+ GL G DG PG G +
Sbjct: 520 MQGVKGLKGHPGLPGLQGEQGIPGFTGNIGSRGYPGRQGLAGPDGNPGPKGVR 572
>gi|426235903|ref|XP_004011917.1| PREDICTED: collagen alpha-1(XIV) chain [Ovis aries]
Length = 1805
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ + G G+PGE G G G G G+PG G PG+DG PG G
Sbjct: 1519 LSIQGMPGMPGEKGEKGDTGLPGPQGVPGSVGSPGRDGSPGQRG 1562
Score = 41.6 bits (96), Expect = 0.059, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
I G G+ G G G+ GL G G G G PG+DG PG+ G PG +
Sbjct: 1521 IQGMPGMPGEKGEKGDTGLPGPQGVPGSVGSPGRDGSPGQRGFPGKD 1567
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G PG+ G G G G+PG G+PG G PG +G+
Sbjct: 1521 IQGMPGMPGEKGEKGDTGLPGPQGVPGSVGSPGRDGS 1557
>gi|348583740|ref|XP_003477630.1| PREDICTED: collagen alpha-1(IV) chain [Cavia porcellus]
Length = 1670
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 35/65 (53%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKDGL---------PGKDGIPGTN 73
G IG G GLPGE PGLDGIPG G G+PG GL PG DGIPG+
Sbjct: 1104 GSIGYQGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGLIGPTGQKGEPGSDGIPGSA 1163
Query: 74 GTKTD 78
G K +
Sbjct: 1164 GEKGE 1168
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 29/55 (52%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG G G+ G PG PG G G G+ G PG+ G PG G PG G K +H
Sbjct: 855 TGQSGMPGPPGQQGTPGLPGFQGPKGEMGIMGTPGQPGAPGPVGAPGFPGEKGEH 909
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 22/38 (57%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
G G DGLPG PG G G G G PG+ GLPG+ G
Sbjct: 647 GPPGADGLPGSPGFPGPQGDRGFPGTPGRPGLPGEKGA 684
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 26/47 (55%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
L G G PG PG G+PGR G G G GLPG G PG+ G K +
Sbjct: 540 LKGDKGAPGFPGQPGLPGRAGTPGRDGHPGLPGPKGSPGSIGLKGER 586
>gi|148231059|ref|NP_001090661.1| collagen, type IX, alpha 2 precursor [Xenopus (Silurana)
tropicalis]
gi|117558733|gb|AAI27301.1| LOC100036633 protein [Xenopus (Silurana) tropicalis]
Length = 686
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 31/49 (63%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+G G+DG+DG PG GL G PG+NGM G PG GL G G PGT G
Sbjct: 297 TNGLPGIDGKDGTPGLAGLKGSPGQNGMPGGPGHQGLAGLPGQPGTKGA 345
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD------GIPGTNGTK 76
G +G G +GLPG G DG PG G+ G PG++G+PG G+PG GTK
Sbjct: 290 GGMGPKGTNGLPGIDGKDGTPGLAGLKGSPGQNGMPGGPGHQGLAGLPGQPGTK 343
>gi|440900498|gb|ELR51625.1| Collagen alpha-1(VI) chain [Bos grunniens mutus]
Length = 1021
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 31/57 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G+ G+DG DG+ GE G G+PG G G G GLPG G PG G K GAD
Sbjct: 323 GKRGMDGVDGMKGETGFPGLPGCKGSPGFDGIQGLPGPKGDPGAFGLKGQKGEPGAD 379
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
L GE G DG PG NG +G PG G PG G PG NGTK
Sbjct: 504 LMGERGEDGPPG-NGTEGFPGFPGYPGSRGPPGINGTK 540
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 25/48 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G G G G PG DGI G G G PG GL G+ G PG +G
Sbjct: 333 MKGETGFPGLPGCKGSPGFDGIQGLPGPKGDPGAFGLKGQKGEPGADG 380
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 27/52 (51%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G G G G+DG+ G G G+PG G PG DGI G G K D A G
Sbjct: 317 GYKGEKGKRGMDGVDGMKGETGFPGLPGCKGSPGFDGIQGLPGPKGDPGAFG 368
>gi|410911218|ref|XP_003969087.1| PREDICTED: collagen alpha-1(XVI) chain-like [Takifugu rubripes]
Length = 1546
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 9 QVLEVHDRR------DIGRAISTVIS-GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD 61
QV++V D R + + V S GR G G+DG G PGL G PGR G G+
Sbjct: 1392 QVIKVFDERMAYYMSRVQTPVEMVASPGRPGPPGKDGSSGSPGLPGTPGRPGHI---GRQ 1448
Query: 62 GLPGKDGIPGTNGTKTDH 79
GLPG G+PG G K D
Sbjct: 1449 GLPGNQGMPGAKGDKGDK 1466
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GEPG DG G++G+ G+PG G PG+ G PG +G K
Sbjct: 1286 GEPGSDGAVGKDGVAGLPGDRGSPGQKGEPGESGQK 1321
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 31/60 (51%), Gaps = 12/60 (20%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGI------------PGRNGMDGIPGKDGLPGKDGIPGTNG 74
+SG+ G DG GL GE G DG PG G+ G PG +GL GKDG PG G
Sbjct: 1063 VSGKTGRDGPPGLKGEKGNDGAQGSQGPTGARGSPGSPGLMGPPGIEGLDGKDGKPGLRG 1122
>gi|348518277|ref|XP_003446658.1| PREDICTED: collagen alpha-1(VIII) chain-like [Oreochromis
niloticus]
Length = 735
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL--PGKDGI---PGTN 73
IG+ + G+ G+ G+ G PGEPGL G PG G G+PG G+ PGKDG PG +
Sbjct: 268 IGKPGMNGLPGQPGIPGKPGSPGEPGLAGAPGDRGQPGVPGVPGIGKPGKDGFRGQPGVS 327
Query: 74 GTKTD 78
G K +
Sbjct: 328 GGKGE 332
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP--GKDGIPGTNGTK 76
IG G+DG G+PG+ G G G+ G+PG GLP G G PG G K
Sbjct: 312 IGKPGKDGFRGQPGVSGGKGEPGLPGLPGNPGLPGYGTPGFPGPKGHK 359
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G+ G++G G PG PG G PG G+ G PG G PG G+PG D +
Sbjct: 269 GKPGMNGLPGQPGIPGKPGSPGEPGLAGAPGDRGQPGVPGVPGIGKPGKDGF 320
>gi|432905697|ref|XP_004077472.1| PREDICTED: collagen alpha-1(XXI) chain-like [Oryzias latipes]
Length = 878
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G G G G PG PG G+PGR+G DGIPG+DG G+ G+ G G+
Sbjct: 518 GEKGSAGSPGSPGFPGKPGVPGRDGKDGIPGRDGQKGETGVSGIPGS 564
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 31/59 (52%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
DIG G G G GLPG PGL G G G+ G PG+ G PG G+PG G+K
Sbjct: 588 DIGEPGPKGFKGSSGPPGETGLPGTPGLRGPTGPKGIAGDPGRPGQPGHPGMPGLKGSK 646
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTK 76
G GL G G PGE G G G G G PGK G+P GKDGIPG +G K
Sbjct: 503 GSSGLPGLPGQPGEKGEKGSAGSPGSPGFPGKPGVPGRDGKDGIPGRDGQK 553
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 25/46 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G GLPG PG G G G G PG G PGK G+PG +G
Sbjct: 497 GVTGERGSSGLPGLPGQPGEKGEKGSAGSPGSPGFPGKPGVPGRDG 542
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G+ G G G G PG G PG+ G+ G GKDG+PG+DG G G
Sbjct: 510 LPGQPGEKGEKGSAGSPGSPGFPGKPGVPGRDGKDGIPGRDGQKGETG 557
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
SG GLDG+ G GEPG G G G PG+ GLPG G+ G G K
Sbjct: 577 SGVAGLDGQKGDIGEPGPKGF---KGSSGPPGETGLPGTPGLRGPTGPK 622
>gi|339254694|ref|XP_003372570.1| cuticle collagen 7 [Trichinella spiralis]
gi|316966970|gb|EFV51477.1| cuticle collagen 7 [Trichinella spiralis]
Length = 278
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 29/46 (63%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G+ G+ G+ G PG GIPGR G+DG PG GLPG G PG G
Sbjct: 137 GEKGVPGQRGMRGRPGPKGIPGRPGLDGRPGTMGLPGAQGPPGQPG 182
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 32/57 (56%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GR I GR GLDGR G G PG G PG+ G G+PG+ G G DG+ G G K
Sbjct: 149 GRPGPKGIPGRPGLDGRPGTMGLPGAQGPPGQPGQIGLPGEAGNYGHDGVEGKKGPK 205
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 27 ISGRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G+ G+ GR G+PG PGLDG PG G+ G G G PG+ G+PG G
Sbjct: 141 VPGQRGMRGRPGPKGIPGRPGLDGRPGTMGLPGAQGPPGQPGQIGLPGEAGN 192
>gi|170695974|ref|ZP_02887113.1| Collagen triple helix repeat [Burkholderia graminis C4D1M]
gi|170139158|gb|EDT07347.1| Collagen triple helix repeat [Burkholderia graminis C4D1M]
Length = 278
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G+DGRDG G+ G DG+ GR+G +GI G+ G G+DG G +G
Sbjct: 53 GKDGIDGRDGKDGDAGRDGVDGRDGTNGIDGRHGSDGEDGRDGVDGV 99
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 9/67 (13%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
++GR G+DG+D G DGI GR+G DG G+DG+ G+D GTNG H + G D
Sbjct: 42 VAGREGIDGKD------GKDGIDGRDGKDGDAGRDGVDGRD---GTNGIDGRHGSDGEDG 92
Query: 87 KSFSDGV 93
+ DGV
Sbjct: 93 RDGVDGV 99
>gi|360043237|emb|CCD78650.1| hypothetical protein Smp_197370 [Schistosoma mansoni]
Length = 1308
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 9 QVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDG---------IPG 59
+V EV R +G G+ GLDG+ G PGE G+ G PG++G+ G PG
Sbjct: 228 EVGEVGIRGGVGEP------GKPGLDGKPGRPGEQGIQGPPGKDGIQGQKGDIGFRGAPG 281
Query: 60 KDGLPGKDGIPGTNGTKTDHYAMGA 84
+G+PG G PGT+G+ + G+
Sbjct: 282 PEGMPGPRGAPGTSGSPGEQGTKGS 306
>gi|431905143|gb|ELK10194.1| Collagen alpha-6(IV) chain [Pteropus alecto]
Length = 658
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G +G+DG G PG+PG G PGR+G +G G G PG DG PG G+ G
Sbjct: 164 VPGFLGIDGIPGHPGQPGSRGPPGRDGCNGTQGAVGFPGPDGFPGLLGSPVRCQIFGPPG 223
Query: 87 KSFSDG 92
+ S G
Sbjct: 224 QKGSKG 229
>gi|119889929|ref|XP_609742.3| PREDICTED: collagen alpha-1(XXIV) chain [Bos taurus]
Length = 1691
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
SG+ G+ G GLPG G+ G G G+ G PGK GLPGK G+PG G+
Sbjct: 1252 SGKPGIPGLPGLPGPKGMQGYHGAEGISGNPGKIGLPGKHGLPGIRGS 1299
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTKTD 78
G +G G G GEPGL G PG G +G+ GKDGL PG G+PG +G K +
Sbjct: 1004 TKGDVGPVGSVGAAGEPGLRGEPGAPGEEGLQGKDGLKGNPGGRGLPGEDGEKGE 1058
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
E + D+G S +G GL G G PGE GL G++G+ G PG GLPG+DG
Sbjct: 1001 EPGTKGDVGPVGSVGAAGEPGLRGEPGAPGEEGLQ---GKDGLKGNPGGRGLPGEDG 1054
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G G GL GE G +G G+ G G GK G+PG G+PG G + H A G
Sbjct: 1223 GEPGDQGEQGLKGERGSEGPKGKKGAPGPSGKPGIPGLPGLPGPKGMQGYHGAEG 1277
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGKDGIPGTNGTK 76
+ G GL G GLPG G GIPG G G PG+ GL G DG PG G +
Sbjct: 542 MQGVKGLKGHPGLPGLQGEQGIPGFTGNIGSRGYPGRQGLAGPDGNPGPKGVR 594
>gi|301611051|ref|XP_002935065.1| PREDICTED: complement C1q tumor necrosis factor-related protein
5-like [Xenopus (Silurana) tropicalis]
Length = 239
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G PG+ GIPG +G G+PG+DG GKDG PGT+G K D
Sbjct: 31 GMPGIPGIPGTHGNAGLPGRDGRDGKDGSPGTSGPKGD 68
>gi|170579429|ref|XP_001894827.1| collagen alpha 2(IV) chain precursor [Brugia malayi]
gi|158598437|gb|EDP36327.1| collagen alpha 2(IV) chain precursor, putative [Brugia malayi]
Length = 1761
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG---KDGLPGKDGIPGTNGTKTDHYAMGAD 85
G +GL G G PG PGL G+ G G+ G PG + G+PGK G PG+ G K D GA
Sbjct: 1353 GDVGLSGAPGAPGLPGLPGLKGEPGLPGFPGPKGEPGIPGKPGFPGSQGVKGDCGTPGAP 1412
Query: 86 TKSFSDGVL 94
+ + G +
Sbjct: 1413 GRDGAPGKI 1421
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 29/47 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G GL G+DGLPG PG+ G PG G GIPG G PG GIPG G
Sbjct: 1274 PGAPGLPGKDGLPGLPGMKGEPGIPGYPGIPGAKGEPGLPGIPGAKG 1320
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 28/49 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G GL G GL GEPGL G PG G GIPGK G PG G+ G GT
Sbjct: 1360 APGAPGLPGLPGLKGEPGLPGFPGPKGEPGIPGKPGFPGSQGVKGDCGT 1408
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G+ G G+PG EPGL GIPG G G+PG GL GKDG+PG+ G
Sbjct: 1291 MKGEPGIPGYPGIPGAKGEPGLPGIPGAKGEPGLPGLPGLRGKDGLPGSPG 1341
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 33/52 (63%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G GL G G+ GE G+ G+PG G+ G+PG G PGKDGIPG G K +
Sbjct: 952 AGLPGLPGAPGVKGERGIAGLPGLPGVKGVPGYPGAPGKDGIPGIPGEKGER 1003
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 30/52 (57%)
Query: 23 ISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
S I+G G G GLPG+ GL G+PG G GIPG G+PG G PG G
Sbjct: 1263 ASASIAGLKGSPGAPGLPGKDGLPGLPGMKGEPGIPGYPGIPGAKGEPGLPG 1314
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G GL G+DGLPG PG+ G+PG G G G G PG G+PG G K +
Sbjct: 1324 LPGLPGLRGKDGLPGSPGVAGLPGLPGAKGDVGLSGAPGAPGLPGLPGLKGE 1375
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 29/50 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G GLPG PG DG+PG G+ G G G PGKDG PG G K +
Sbjct: 1195 GAPGYPGVKGLPGFPGKDGLPGLPGIKGDAGIQGPPGKDGFPGLPGQKGE 1244
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G GL G G GEPGL G+PG G DG+PG G+ G G+PG G
Sbjct: 1308 GEPGLPGIPGAKGEPGLPGLPGLRGKDGLPGSPGVAGLPGLPGAKG 1353
Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNG------MDGIPGKDGLPGKDGIPGTNGTKTDHY 80
+ G GL G GLPG+ G G+PG+ G G+PG GLPGK G+PG G K
Sbjct: 1097 LKGEPGLAGLPGLPGQIGAPGLPGQKGDAGFPGQAGLPGAPGLPGKMGVPGIRGDKGSPG 1156
Query: 81 AMGADTKSFSDGV 93
GA + DG+
Sbjct: 1157 IPGAYGERGLDGL 1169
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKDGIPGTNGTKTD 78
I G G GR G PG GLDG PG G+ G P G GLPG+ G PG G K D
Sbjct: 1070 IPGLPGKQGRPGAPGPKGLDGAPGFPGLKGEPGLAGLPGLPGQIGAPGLPGQKGD 1124
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPG 71
++G + G G G+DGLPG PG+ G PG++G G+PG+ G G G+PG
Sbjct: 1193 NVGAPGYPGVKGLPGFPGKDGLPGLPGIKGDAGIQGPPGKDGFPGLPGQKGEAGLPGLPG 1252
Query: 72 TNG 74
+ G
Sbjct: 1253 SPG 1255
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G+ G G PG+ G DG+PG G+ G+ G GLPG G+PG +G
Sbjct: 883 AGPPGVAGLPGFPGQKGEDGLPGLPGVAGLKGDAGLPGAPGLPGADG 929
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GL G PG G+PG++G+ G+PG G PG G PG G K +
Sbjct: 1269 GLKGSPGAPGLPGKDGLPGLPGMKGEPGIPGYPGIPGAKGE 1309
Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G GLPGE G+ G+PG+ G G PG GL G G PG G
Sbjct: 1060 GAPGLPGEKGIPGLPGKQGRPGAPGPKGLDGAPGFPGLKG 1099
>gi|296208397|ref|XP_002751075.1| PREDICTED: collagen alpha-1(XXIV) chain [Callithrix jacchus]
Length = 1713
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTKTD 78
G +GL G G GEPGL G PG G +G+ GKDGL PG GIPG NG K +
Sbjct: 1028 GEVGLAGSVGGTGEPGLRGEPGAPGEEGLQGKDGLKGVPGGRGIPGENGEKGE 1080
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ ++ SG+ G+ G G PG G G G +G+ G PGK G PGK G+PG G+
Sbjct: 1266 GKKGASGPSGKPGIPGLQGPPGPKGTQGYYGADGISGNPGKVGSPGKQGLPGIRGS 1321
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
ISG G G G G PG+ G PGR G+ G PG G+ G G+PG+ G +
Sbjct: 1300 ISGNPGKVGSPGKQGLPGIRGSPGRTGLAGAPGPPGVKGSSGLPGSPGVQ 1349
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E + ++G A S +G GL G G PGE GL G ++G+ G+PG G+PG++G G
Sbjct: 1023 EPGAKGEVGLAGSVGGTGEPGLRGEPGAPGEEGLQG---KDGLKGVPGGRGIPGENGEKG 1079
Query: 72 TNG 74
G
Sbjct: 1080 EMG 1082
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 29 GRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G++G G+ GLPG PG G+ G G G+ G GLPG G+ G G + H G
Sbjct: 1305 GKVGSPGKQGLPGIRGSPGRTGLAGAPGPPGVKGSSGLPGSPGVQGPKGEQGLHGQPGIQ 1364
Query: 86 TK 87
K
Sbjct: 1365 GK 1366
>gi|423260451|ref|ZP_17241373.1| hypothetical protein HMPREF1055_03650 [Bacteroides fragilis
CL07T00C01]
gi|423266585|ref|ZP_17245587.1| hypothetical protein HMPREF1056_03274 [Bacteroides fragilis
CL07T12C05]
gi|387775005|gb|EIK37114.1| hypothetical protein HMPREF1055_03650 [Bacteroides fragilis
CL07T00C01]
gi|392699817|gb|EIY92986.1| hypothetical protein HMPREF1056_03274 [Bacteroides fragilis
CL07T12C05]
Length = 691
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+G G DG+DG G+ G DGI G++G DG GKDG G DG G +GT
Sbjct: 114 NGTDGKDGQDGTDGKNGQDGIDGQDGQDGTDGKDGQDGTDGKDGQDGT 161
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G DG+DG G+ G DG G++G DG G+DG+ G+DG GT+G
Sbjct: 100 GKKGEDGQDGQNGQNGTDGKDGQDGTDGKNGQDGIDGQDGQDGTDG 145
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G DG DG G+ G+DG G++G DG G+DG GKDG GT+G
Sbjct: 118 GKDGQDGTDGKNGQDGIDGQDGQDGTDGKDGQDGTDGKDGQDGTDG 163
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G +G++G G+ G DG G+NG DGI G+DG G DG G +GT
Sbjct: 106 GQDGQNGQNGTDGKDGQDGTDGKNGQDGIDGQDGQDGTDGKDGQDGT 152
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G DG+DG G+ G DG G++G DG GKDG G DG G G K
Sbjct: 136 GQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDK 180
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 20 GRAISTVISGRI----GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G IS SG I G G DG GE G DG G+NG DG G+DG GK+G G +G
Sbjct: 78 GYTISFFKSGTIVIKNGEKGEDGKKGEDGQDGQNGQNGTDGKDGQDGTDGKNGQDGIDG 136
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+G+ G+DG+D G+ G DG G++G DG G+DG GKDG GT+GT
Sbjct: 129 NGQDGIDGQD---GQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGT 173
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G DG DG G+ G DG G++G DG G+DG G DG G G
Sbjct: 134 IDGQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDKG 181
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 27/47 (57%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G DG+DG G G DG G +G DG G DG G +G G NGT
Sbjct: 139 GQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDKGQNGT 185
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G G G DG G+ G +G G++G DG GK+G G DG G +GT
Sbjct: 97 GEDGKKGEDGQDGQNGQNGTDGKDGQDGTDGKNGQDGIDGQDGQDGT 143
>gi|110629868|gb|ABG80450.1| fibrillar collagen [Hydra vulgaris]
Length = 1883
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+GR G G +G PG PG+ GIPG G G+PG++G PG G PG G+
Sbjct: 1022 NGRRGDKGAEGQPGNPGVQGIPGERGAIGLPGENGAPGIKGQPGQPGS 1069
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G+ G++G DG G PG+ G PG G G G DGL G DG+PG +G
Sbjct: 1147 LKGQPGVNGNDGPTGYPGMTGEPGVRGSRGERGADGLTGADGLPGNDG 1194
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GL G G PGEPG G G G+ G PG+DGL G+ G G G+K
Sbjct: 885 GLQGLPGSPGEPGQTGEKGSEGLVGDPGRDGLKGEKGFTGFKGSK 929
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 28 SGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIP---GKDGLPGKDGIPGTNGTKTDH 79
+G++G +GRDG PG GL GIPG NG++G+ G+ G PG++G+ G G + D
Sbjct: 950 NGQMGTNGRDGNPGPNGLQGIQGIPGANGVNGVSGDLGEVGSPGENGLKGEKGIRGDS 1007
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+IG G GLPG+ G G G NG+ G+PG G PG+ G G+ G
Sbjct: 861 GQIGKQGLSGLPGQRGQPGAEGLNGLQGLPGSPGEPGQTGEKGSEG 906
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 9/57 (15%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTNG 74
+ G IG +G G PG+ GL G G++GM G+ G +DG PGKDG+ GTNG
Sbjct: 1366 MPGPIGANGTKGFPGKNGLHGQHGKSGMTGMTGPIGPPGLPGEDGRPGKDGVNGTNG 1422
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGI---PGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G+ G G G+PGE G G+PG NG GI PG+ G PG+ G PG G H G
Sbjct: 1031 EGQPGNPGVQGIPGERGAIGLPGENGAPGIKGQPGQPGSPGQVGEPGAPGLAGIHGPQGT 1090
Query: 85 DTKSFSDGV 93
K+ +G
Sbjct: 1091 RGKNGENGA 1099
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I G G G++G G G+DG+PG G+ G+PG+ GL G+ G G G+K
Sbjct: 1084 IHGPQGTRGKNGENGAAGVDGLPGDRGLQGLPGRPGLQGQSGAHGKLGSK 1133
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 29/51 (56%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
S SG G G+ G G+ G +G G NG DG PG +GL G GIPG NG
Sbjct: 928 SKGFSGEQGEAGQPGTVGKDGKNGQMGTNGRDGNPGPNGLQGIQGIPGANG 978
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 29/57 (50%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G IGL G +G PG G G PG G G PG GL G G GT G ++ A G D
Sbjct: 1047 GAIGLPGENGAPGIKGQPGQPGSPGQVGEPGAPGLAGIHGPQGTRGKNGENGAAGVD 1103
>gi|354467156|ref|XP_003496037.1| PREDICTED: collagen alpha-1(IX) chain-like [Cricetulus griseus]
Length = 1041
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 33/60 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G+DGRDG+PG PG G G+ G G G GLPG GIPG G + GA K
Sbjct: 657 TGLPGVDGRDGIPGMPGTKGEAGKPGPPGDVGSQGLPGVPGIPGAKGVAGEKGNTGAPGK 716
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 24/46 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G G G+PG PG G+ G G G PGK G G G PG G
Sbjct: 685 GDVGSQGLPGVPGIPGAKGVAGEKGNTGAPGKPGQLGSSGKPGQQG 730
>gi|297683547|ref|XP_002819437.1| PREDICTED: collagen alpha-1(XIV) chain [Pongo abelii]
Length = 1761
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 24/42 (57%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G+PGE G G G G GIPG G PG+DG PG G
Sbjct: 1478 IQGMPGMPGEKGEKGDTGLPGPQGIPGGVGSPGRDGSPGQRG 1519
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 67
+ G G G GLPG G+ G G G DG PG+ GLPGKD
Sbjct: 1484 MPGEKGEKGDTGLPGPQGIPGGVGSPGRDGSPGQRGLPGKD 1524
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
I G G+ G G G+ GL G G G G PG+DG PG+ G+PG +
Sbjct: 1478 IQGMPGMPGEKGEKGDTGLPGPQGIPGGVGSPGRDGSPGQRGLPGKD 1524
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
+ G PG+ G G G G+PG G+PG G PG +G+ G D
Sbjct: 1478 IQGMPGMPGEKGEKGDTGLPGPQGIPGGVGSPGRDGSPGQRGLPGKD 1524
>gi|225868146|ref|YP_002744094.1| collagen-binding collagen-like cell surface-anchored protein FneC
[Streptococcus equi subsp. zooepidemicus]
gi|225701422|emb|CAW98522.1| putative collagen-binding collagen-like cell surface-anchored
protein FneC [Streptococcus equi subsp. zooepidemicus]
Length = 677
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G G GLPG+ G G PGRNG DG PGKD G+DG PG G + G ++
Sbjct: 322 GPAGPQGPQGLPGKQGPQGTPGRNGQDGKPGKD---GQDGKPGDKGERGPAGPQGPKGEN 378
Query: 89 FSDG 92
DG
Sbjct: 379 GKDG 382
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 25/47 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G GRDGLPG G G PG G G G GLPGK G GT G
Sbjct: 297 QGEPGKSGRDGLPGPTGPKGEPGARGPAGPQGPQGLPGKQGPQGTPG 343
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 29/56 (51%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G G G G GE G DG PGR+G DG GKDG PG G G G K + G
Sbjct: 462 TGDRGPAGPQGPRGENGKDGAPGRDGHDGQDGKDGQPGPKGERGEQGPKGERGEQG 517
>gi|26251946|gb|AAH40438.1| C1q and tumor necrosis factor related protein 9 [Homo sapiens]
gi|37181396|gb|AAQ88512.1| RIWW6503 [Homo sapiens]
gi|312153004|gb|ADQ33014.1| C1q and tumor necrosis factor related protein 9 [synthetic
construct]
Length = 333
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 3 RVQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG 62
R+ +L +E+ + S G G+PG PG +G+PGR+G DG G G
Sbjct: 2 RIWWLLLAIEI--------CTGNINSQDTCRQGHPGIPGNPGHNGLPGRDGRDGAKGDKG 53
Query: 63 ---LPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
PG+ G PG +GT + GAD K + G+
Sbjct: 54 DAGEPGRPGSPGKDGTSGEKGERGADGKVEAKGI 87
>gi|65301115|ref|NP_848635.2| complement C1q and tumor necrosis factor-related protein 9A
precursor [Homo sapiens]
gi|205686199|sp|P0C862.1|C1T9A_HUMAN RecName: Full=Complement C1q and tumor necrosis factor-related
protein 9A; AltName: Full=Complement C1q and tumor
necrosis factor-related protein 9; Flags: Precursor
Length = 333
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 3 RVQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG 62
R+ +L +E+ + S G G+PG PG +G+PGR+G DG G G
Sbjct: 2 RIWWLLLAIEI--------CTGNINSQDTCRQGHPGIPGNPGHNGLPGRDGRDGAKGDKG 53
Query: 63 ---LPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
PG+ G PG +GT + GAD K + G+
Sbjct: 54 DAGEPGRPGSPGKDGTSGEKGERGADGKVEAKGI 87
>gi|453232015|ref|NP_001022662.2| Protein EMB-9, isoform a [Caenorhabditis elegans]
gi|413002798|emb|CAA81584.5| Protein EMB-9, isoform a [Caenorhabditis elegans]
Length = 1759
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G G +G DG PG PG G PG G DG PG G+PG+DG+ G G + +H
Sbjct: 915 AGAPGQNGMDGYPGAPGDQGYPGSPGQDGYPGPSGIPGEDGLVGFPGLRGEH 966
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 28/47 (59%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G GL G DGLPG G +GIPG NG DG PG GL G G G NG
Sbjct: 103 GHPGLQGLDGLPGLKGEEGIPGCNGTDGFPGMPGLAGPPGQSGQNGN 149
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I+G GL G GLPG PG DGIPG+ G++G G+DG PG G PG G +
Sbjct: 1105 ITGMPGLKGESGLPGLPGRQGNDGIPGQPGLEGECGEDGFPGSPGQPGYPGQQ 1157
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 20 GRAISTVISGRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR + I G+ GL+G DG PG PG G PG+ G +G G G+PG++G+PG G
Sbjct: 1122 GRQGNDGIPGQPGLEGECGEDGFPGSPGQPGYPGQQGREGEKGYPGIPGENGLPGLRG 1179
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK------------DGLPGKD 67
G A + + G G GRDGLPG PG G G NG DG PG+ DG G+D
Sbjct: 838 GDAGAAGLPGPDGYPGRDGLPGTPGYPGEAGMNGQDGAPGQPGSRGESGLVGIDGKKGRD 897
Query: 68 GIPGTNG 74
G PGT G
Sbjct: 898 GTPGTRG 904
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 9/50 (18%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGT 72
GR G +G G PG+PG+ DG PGR+G+DG+PG+ PG++G+PG
Sbjct: 1391 GRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGR---PGREGLPGP 1437
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G DG G PG PG +G PG G+ G+PG+ G G +G PG G
Sbjct: 1356 LEGDCGEDGYPGAPGAPGSNGYPGERGLPGVPGQQGRSGDNGYPGAPG 1403
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G G GLPG+ GL G PG+ G G PG DG PG G+ G G D GA +
Sbjct: 1452 NGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLSGMPGHGGDQGFQGAAGR 1511
Query: 88 SFSDGV 93
+ + G+
Sbjct: 1512 TGNPGL 1517
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGT 72
R + ++ + G G +G PGE G G+PG NG+ G PGK G PG DG PG
Sbjct: 1431 REGLPGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGP 1490
Query: 73 NG 74
G
Sbjct: 1491 PG 1492
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---------GIPGTNG 74
+ + G G G DG+PG+PGL+G G +G G PG+ G PG+ GIPG NG
Sbjct: 1114 ESGLPGLPGRQGNDGIPGQPGLEGECGEDGFPGSPGQPGYPGQQGREGEKGYPGIPGENG 1173
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG---KDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G +G G G PG DG PGR+G+ G PG + G+ G+DG PG G++ + +G D
Sbjct: 832 GYPGPNGDAGAAGLPGPDGYPGRDGLPGTPGYPGEAGMNGQDGAPGQPGSRGESGLVGID 891
Query: 86 TKSFSDGV 93
K DG
Sbjct: 892 GKKGRDGT 899
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 31/58 (53%), Gaps = 12/58 (20%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGI------------PGKDGLPGKDGIPGTNG 74
G G G+DG PG G G PG+NGMDG PG+DG PG GIPG +G
Sbjct: 898 GTPGTRGQDGGPGYSGEAGAPGQNGMDGYPGAPGDQGYPGSPGQDGYPGPSGIPGEDG 955
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G+ G DG G PG PG++G+P G++G G+DG PG G PG+NG
Sbjct: 1332 LDGKRGHDGLPGAPGVPGVEGVP---GLEGDCGEDGYPGAPGAPGSNG 1376
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
G PGE GL G+ G+ G DG+PG G+PG +G+PG G + GA S+G
Sbjct: 1322 GYPGERGLPGLDGKRGHDGLPGAPGVPGVEGVPGLEGDCGEDGYPGAPGAPGSNGY 1377
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
G +G DG PG PGL G PG++G +G PG+ GL G G G N
Sbjct: 124 GCNGTDGFPGMPGLAGPPGQSGQNGNPGRPGLSGPPGEGGVN 165
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 35/69 (50%), Gaps = 20/69 (28%)
Query: 27 ISGRIGLDG------RDGLPG-----------EPGLDGIPGRNGMDGIPGKDGL---PGK 66
GR GLDG R+GLPG +PG +G PG G G+PG +GL PGK
Sbjct: 1416 FPGRDGLDGLPGRPGREGLPGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGK 1475
Query: 67 DGIPGTNGT 75
G PG GT
Sbjct: 1476 AGYPGAPGT 1484
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 37/83 (44%), Gaps = 26/83 (31%)
Query: 29 GRIGLDGRDGLPGEPGLD-----------------------GIPGRN---GMDGIPGKDG 62
G +G +G DG GEPGLD G PG N G G+PG DG
Sbjct: 791 GEVGFNGIDGDCGEPGLDGYPGAPGAPGAPGETGFGFPGQVGYPGPNGDAGAAGLPGPDG 850
Query: 63 LPGKDGIPGTNGTKTDHYAMGAD 85
PG+DG+PGT G + G D
Sbjct: 851 YPGRDGLPGTPGYPGEAGMNGQD 873
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 4 VQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI-----P 58
+ GM E DR + G G G GLPGEPG G PG +G+ G P
Sbjct: 413 IDGMPGYTEKGDRGE---------DGYPGFAGEPGLPGEPGDCGYPGEDGLPGYDIQGPP 463
Query: 59 GKDGLPGKDGIPGTNG 74
G DG G+DG PG G
Sbjct: 464 GLDGQSGRDGFPGIPG 479
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 23 ISTVISGRIGLDGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPGKDGIPGTNG 74
I ++G+ G+DG GLPG+ G DG+PG G DG PG G G DG+PG G
Sbjct: 725 IVNQVAGQPGVDGMPGLPGDRGADGLPGLPGPVGPDGYPGTPGERGMDGLPGFPG 779
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 29/57 (50%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D G + +G G G DG PG PGL G+PG G G G G G G+PGT G
Sbjct: 1466 DNGLSGPPGKAGYPGAPGTDGYPGPPGLSGMPGHGGDQGFQGAAGRTGNPGLPGTPG 1522
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 31/58 (53%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D G S G GL G G PG GLDG+PG G +GIPG +G G G+PG G
Sbjct: 83 DFGDMGSKGARGDRGLPGSPGHPGLQGLDGLPGLKGEEGIPGCNGTDGFPGMPGLAGP 140
Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 27/47 (57%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GLDG G PGE G DG+PG G DG PG G G+ G PG G +
Sbjct: 985 GLDGVPGYPGEHGTDGLPGLPGADGQPGFVGEAGEPGTPGYRGQPGE 1031
>gi|205831680|sp|P17139.4|CO4A1_CAEEL RecName: Full=Collagen alpha-1(IV) chain; Flags: Precursor
Length = 1759
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G G +G DG PG PG G PG G DG PG G+PG+DG+ G G + +H
Sbjct: 915 AGAPGQNGMDGYPGAPGDQGYPGSPGQDGYPGPSGIPGEDGLVGFPGLRGEH 966
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 28/47 (59%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G GL G DGLPG G +GIPG NG DG PG GL G G G NG
Sbjct: 103 GHPGLQGLDGLPGLKGEEGIPGCNGTDGFPGMPGLAGPPGQSGQNGN 149
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I+G GL G GLPG PG DGIPG+ G++G G+DG PG G PG G +
Sbjct: 1105 ITGMPGLKGESGLPGLPGRQGNDGIPGQPGLEGECGEDGFPGSPGQPGYPGQQ 1157
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 20 GRAISTVISGRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR + I G+ GL+G DG PG PG G PG+ G +G G G+PG++G+PG G
Sbjct: 1122 GRQGNDGIPGQPGLEGECGEDGFPGSPGQPGYPGQQGREGEKGYPGIPGENGLPGLRG 1179
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK------------DGLPGKD 67
G A + + G G GRDGLPG PG G G NG DG PG+ DG G+D
Sbjct: 838 GDAGAAGLPGPDGYPGRDGLPGTPGYPGEAGMNGQDGAPGQPGSRGESGLVGIDGKKGRD 897
Query: 68 GIPGTNG 74
G PGT G
Sbjct: 898 GTPGTRG 904
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 9/50 (18%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGT 72
GR G +G G PG+PG+ DG PGR+G+DG+PG+ PG++G+PG
Sbjct: 1391 GRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGR---PGREGLPGP 1437
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G DG G PG PG +G PG G+ G+PG+ G G +G PG G
Sbjct: 1356 LEGDCGEDGYPGAPGAPGSNGYPGERGLPGVPGQQGRSGDNGYPGAPG 1403
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G G GLPG+ GL G PG+ G G PG DG PG G+ G G D GA +
Sbjct: 1452 NGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLSGMPGHGGDQGFQGAAGR 1511
Query: 88 SFSDGV 93
+ + G+
Sbjct: 1512 TGNPGL 1517
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGT 72
R + ++ + G G +G PGE G G+PG NG+ G PGK G PG DG PG
Sbjct: 1431 REGLPGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGP 1490
Query: 73 NG 74
G
Sbjct: 1491 PG 1492
Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---------GIPGTNG 74
+ + G G G DG+PG+PGL+G G +G G PG+ G PG+ GIPG NG
Sbjct: 1114 ESGLPGLPGRQGNDGIPGQPGLEGECGEDGFPGSPGQPGYPGQQGREGEKGYPGIPGENG 1173
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG---KDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G +G G G PG DG PGR+G+ G PG + G+ G+DG PG G++ + +G D
Sbjct: 832 GYPGPNGDAGAAGLPGPDGYPGRDGLPGTPGYPGEAGMNGQDGAPGQPGSRGESGLVGID 891
Query: 86 TKSFSDGV 93
K DG
Sbjct: 892 GKKGRDGT 899
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 31/58 (53%), Gaps = 12/58 (20%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGI------------PGKDGLPGKDGIPGTNG 74
G G G+DG PG G G PG+NGMDG PG+DG PG GIPG +G
Sbjct: 898 GTPGTRGQDGGPGYSGEAGAPGQNGMDGYPGAPGDQGYPGSPGQDGYPGPSGIPGEDG 955
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G+ G DG G PG PG++G+P G++G G+DG PG G PG+NG
Sbjct: 1332 LDGKRGHDGLPGAPGVPGVEGVP---GLEGDCGEDGYPGAPGAPGSNG 1376
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
G PGE GL G+ G+ G DG+PG G+PG +G+PG G + GA S+G
Sbjct: 1322 GYPGERGLPGLDGKRGHDGLPGAPGVPGVEGVPGLEGDCGEDGYPGAPGAPGSNGY 1377
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
G +G DG PG PGL G PG++G +G PG+ GL G G G N
Sbjct: 124 GCNGTDGFPGMPGLAGPPGQSGQNGNPGRPGLSGPPGEGGVN 165
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 35/69 (50%), Gaps = 20/69 (28%)
Query: 27 ISGRIGLDG------RDGL-----------PGEPGLDGIPGRNGMDGIPGKDGL---PGK 66
GR GLDG R+GL PG+PG +G PG G G+PG +GL PGK
Sbjct: 1416 FPGRDGLDGLPGRPGREGLPGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGK 1475
Query: 67 DGIPGTNGT 75
G PG GT
Sbjct: 1476 AGYPGAPGT 1484
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 37/83 (44%), Gaps = 26/83 (31%)
Query: 29 GRIGLDGRDGLPGEPGLD-----------------------GIPGRN---GMDGIPGKDG 62
G +G +G DG GEPGLD G PG N G G+PG DG
Sbjct: 791 GEVGFNGIDGDCGEPGLDGYPGAPGAPGAPGETGFGFPGQVGYPGPNGDAGAAGLPGPDG 850
Query: 63 LPGKDGIPGTNGTKTDHYAMGAD 85
PG+DG+PGT G + G D
Sbjct: 851 YPGRDGLPGTPGYPGEAGMNGQD 873
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 4 VQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI-----P 58
+ GM E DR + G G G GLPGEPG G PG +G+ G P
Sbjct: 413 IDGMPGYTEKGDRGE---------DGYPGFAGEPGLPGEPGDCGYPGEDGLPGYDIQGPP 463
Query: 59 GKDGLPGKDGIPGTNG 74
G DG G+DG PG G
Sbjct: 464 GLDGQSGRDGFPGIPG 479
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 23 ISTVISGRIGLDGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPGKDGIPGTNG 74
I ++G+ G+DG GLPG+ G DG+PG G DG PG G G DG+PG G
Sbjct: 725 IVNQVAGQPGVDGMPGLPGDRGADGLPGLPGPVGPDGYPGTPGERGMDGLPGFPG 779
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 29/57 (50%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D G + +G G G DG PG PGL G+PG G G G G G G+PGT G
Sbjct: 1466 DNGLSGPPGKAGYPGAPGTDGYPGPPGLSGMPGHGGDQGFQGAAGRTGNPGLPGTPG 1522
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 31/58 (53%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D G S G GL G G PG GLDG+PG G +GIPG +G G G+PG G
Sbjct: 83 DFGDMGSKGARGDRGLPGSPGHPGLQGLDGLPGLKGEEGIPGCNGTDGFPGMPGLAGP 140
>gi|410901501|ref|XP_003964234.1| PREDICTED: collagen alpha-1(IX) chain-like [Takifugu rubripes]
Length = 928
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL------PGKDGIPGTNG 74
I G G DG DG PG G G PG +G+ GIPG DGL PG DG+PG G
Sbjct: 294 IDGERGADGEDGFPGPDGDAGKPGSSGLPGIPGNDGLTGPIGEPGLDGLPGQKG 347
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+G G+DGR+G+PG PG G G+ G G G G PG G PG GT
Sbjct: 540 AGLPGVDGREGIPGMPGAKGSIGKAGAPGEIGPQGFPGLPGSPGPKGT 587
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG 62
D G+ S+ + G G DG G GEPGLDG+PG+ G G PG G
Sbjct: 312 DAGKPGSSGLPGIPGNDGLTGPIGEPGLDGLPGQKGEPGKPGPRG 356
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
+G+ G G G+PG GL G G G+DG+PG+ G PGK G
Sbjct: 313 AGKPGSSGLPGIPGNDGLTGPIGEPGLDGLPGQKGEPGKPG 353
>gi|410490823|ref|YP_006906045.1| hypothetical protein P91_19 [Propionibacterium phage P9.1]
gi|407301917|gb|AFT97475.1| hypothetical protein P91_19 [Propionibacterium phage P9.1]
Length = 268
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGM---DGIPGKDGLPGKDGIPGTNGTKTDH 79
G G+DGRDG+ G GL G PG NG+ DG+PG +G G+DG+PG G +
Sbjct: 111 GPAGVDGRDGVNGSAGLVGPVGPQGSPGLNGVKGPDGLPGVNGSDGRDGVPGRTGADGVN 170
Query: 80 YAMGADTKSFSDGV 93
GAD K ++G
Sbjct: 171 GVAGADGKDGANGA 184
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 32 GLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+ G DGLPG G DG+PGR G DG+ G G GKDG G +G +
Sbjct: 141 GVKGPDGLPGVNGSDGRDGVPGRTGADGVNGVAGADGKDGANGADGER 188
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G DGRDG+PG G DG+ NG+ G GKDG G DG G G
Sbjct: 153 GSDGRDGVPGRTGADGV---NGVAGADGKDGANGADGERGAVG 192
>gi|383858176|ref|XP_003704578.1| PREDICTED: collagen alpha-1(IV) chain-like [Megachile rotundata]
Length = 1862
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 32/52 (61%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
S ++G G G G PGEPG DG+PG+ G G+PGKDG+PG G G G
Sbjct: 670 SPGLTGPRGPPGERGFPGEPGSDGLPGQIGPPGLPGKDGIPGSAGPQGEPGA 721
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDG---------IPGRNGMDGIPGK---DG 62
++ D G G GL G GL G PGL G PG G DG+PG+ G
Sbjct: 643 EKGDAGGRCQDCFPGLPGLKGDRGLDGSPGLTGPRGPPGERGFPGEPGSDGLPGQIGPPG 702
Query: 63 LPGKDGIPGTNGTKTDHYA 81
LPGKDGIPG+ G + + A
Sbjct: 703 LPGKDGIPGSAGPQGEPGA 721
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIP--GRNGMDGIPGKDGLPGKDGI 69
+V ++ G I G G GRDG+ G G GIP GR+G+ G G+ G+PG+DG+
Sbjct: 1143 QVSEKGQKGEPGIPGIRGPPGPAGRDGIDGVKGEAGIPGIGRDGLPGPKGEPGIPGRDGL 1202
Query: 70 PGTNGTKTD 78
PG G K D
Sbjct: 1203 PGLQGQKGD 1211
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 21/76 (27%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNG---------------------MDGIPGKDGLPGKD 67
GR G+ GR G GE GL G+PG G + G PG+DGLPG +
Sbjct: 1393 GREGIPGRPGEKGEQGLPGLPGHKGDQGPYGPIGPEGEKGDMGPAGLPGTPGRDGLPGLE 1452
Query: 68 GIPGTNGTKTDHYAMG 83
G+PG G K D MG
Sbjct: 1453 GMPGLPGEKGDKGDMG 1468
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 32 GLDGRDGLPG-----EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G GLPG E GL G+PG++G +GIPG+ G G+ G+PG G K D G
Sbjct: 1367 GPRGPSGLPGLTIKGEKGLPGMPGKHGREGIPGRPGEKGEQGLPGLPGHKGDQGPYG 1423
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 28 SGRIGLDGRDGLPGEPGL--DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+GR G+DG G G PG+ DG+PG G GIPG+DGLPG G G G +
Sbjct: 1165 AGRDGIDGVKGEAGIPGIGRDGLPGPKGEPGIPGRDGLPGLQGQKGDTGVR 1215
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTD 78
G GLPG PG DG+PG GM G+PG+ G G G+PG G K D
Sbjct: 1435 GPAGLPGTPGRDGLPGLEGMPGLPGEKGDKGDMGPQGLPGAPGQKGD 1481
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ D+G A GR GL G +G+PG PG G G G G+PG G G G PG NG
Sbjct: 1430 EKGDMGPAGLPGTPGRDGLPGLEGMPGLPGEKGDKGDMGPQGLPGAPGQKGDTGFPGLNG 1489
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 34/73 (46%), Gaps = 15/73 (20%)
Query: 28 SGRIGLDGRDGLPGEPG---------------LDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
G +G G GLPG PG + GIPG +GM G PG G PGK G+PG
Sbjct: 976 KGDVGNPGISGLPGAPGEKGDTGPIGPRGPPGVAGIPGVDGMKGEPGLPGEPGKAGLPGF 1035
Query: 73 NGTKTDHYAMGAD 85
G K D G D
Sbjct: 1036 PGAKGDRGEPGID 1048
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG---------IPGTNGTKTDH 79
LDG G PGEPGL G PG G DGIPG G G+ G PG G K D
Sbjct: 610 LDGIPGSPGEPGLPGEPGNPGKDGIPGYPGPAGEKGDAGGRCQDCFPGLPGLKGDR 665
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GRDGLPG G GIPGR+G+ G+ G+ G G G PG G
Sbjct: 1183 GRDGLPGPKGEPGIPGRDGLPGLQGQKGDTGVRGFPGPKG 1222
>gi|344273077|ref|XP_003408353.1| PREDICTED: hypothetical protein LOC100665022 [Loxodonta africana]
Length = 1606
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDHYAMG 83
G +G G DGLPG+PGL G G G+ G PG+ GLPG G PG G K D G
Sbjct: 767 KGELGERGEDGLPGKPGLRGEVGEQGLAGRPGEKGEAGLPGAPGFPGMRGEKGDQGEKG 825
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++GR G G GLPG PG G+ G G G G+ GLPG G G G
Sbjct: 793 LAGRPGEKGEAGLPGAPGFPGMRGEKGDQGEKGELGLPGPKGSQGEKG 840
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G GL GR G GE GL G PG GM G G G G+ G+PG G++ +
Sbjct: 789 GEQGLAGRPGEKGEAGLPGAPGFPGMRGEKGDQGEKGELGLPGPKGSQGE 838
>gi|265766898|ref|ZP_06094727.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263253275|gb|EEZ24751.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 703
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+G G DG+DG G+ G DGI G++G DG GKDG G DG G +GT
Sbjct: 138 NGTDGKDGQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDGKDGQDGT 185
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G+ G DG DG G+ G+DG G++G DG G+DG GKDG GT+G + D
Sbjct: 142 GKDGQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDGKDGQDGTDGPEGD 191
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G DG+DG G+ G DG G++G DG G+DG+ G+DG GT+G
Sbjct: 124 GKKGEDGQDGQNGQNGTDGKDGQDGTDGKDGQDGIDGQDGQDGTDG 169
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G +G DG G+ G DG G++G+DG G+DG GKDG GT+G
Sbjct: 133 GQNGQNGTDGKDGQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDG 178
>gi|221114349|ref|XP_002162772.1| PREDICTED: collagen alpha-1(I) chain-like [Hydra magnipapillata]
Length = 295
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI---PGTNGTKTDHYAMG 83
I G G+ G+DG GE GL+G PG+ G+ G PG G GKDG G +G + H A G
Sbjct: 116 IQGEPGVPGKDGKRGETGLNGEPGKTGLPGTPGAPGRDGKDGAQGPAGKDGAQGPHGAPG 175
Query: 84 ADTKSFSDGVL 94
D K S G +
Sbjct: 176 KDGKDGSQGPV 186
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G DG G PG G DG PG NG DG G GKDG PG G K + G
Sbjct: 202 GKDGSQGPPGRDGKDGNPGSNGKDGA---QGPQGKDGAPGIQGVKGETGPQG 250
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G IG G G PG G G+PG++G G G +G PGK G+PGT G GA
Sbjct: 102 TGPIGEVGPRGFPGIQGEPGVPGKDGKRGETGLNGEPGKTGLPGTPGAPGRDGKDGAQGP 161
Query: 88 SFSDGV 93
+ DG
Sbjct: 162 AGKDGA 167
Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
+G G G+ GLPG PG G G++G G GKDG G G PG +G +G D
Sbjct: 132 TGLNGEPGKTGLPGTPGAPGRDGKDGAQGPAGKDGAQGPHGAPGKDGKDGSQGPVGKD 189
>gi|11096153|gb|AAG30216.1|AF296336_1 collagen-like surface protein [Streptococcus pyogenes]
Length = 404
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGI------PGKDGLPGKDGIPGTNGTKTDHYA 81
+GR G G+DG PGE G G G G G GKDG PGKDG PG G K D
Sbjct: 160 AGRDGAPGKDGAPGEKGEKGDRGETGAQGPVGPQGEAGKDGAPGKDGAPGEKGEKGDRGE 219
Query: 82 MGA 84
GA
Sbjct: 220 TGA 222
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGI------PGKDGLPGKDGIPGTNGTKTDHYA 81
+G+ G G+DG PGE G G G G G GKDG PGKDG PG G K D
Sbjct: 196 AGKDGAPGKDGAPGEKGEKGDRGETGAQGPVGPQGEAGKDGAPGKDGAPGEKGEKGDRGE 255
Query: 82 MGA 84
GA
Sbjct: 256 TGA 258
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 30/71 (42%), Gaps = 18/71 (25%)
Query: 32 GLDGRDGLPGEPGLDGIPGR------------------NGMDGIPGKDGLPGKDGIPGTN 73
G G G PG+PG GIPG G G G+DG PGKDG PG
Sbjct: 116 GDKGEPGEPGKPGAQGIPGPKGDKGETGERGEKGEAGIQGPQGEAGRDGAPGKDGAPGEK 175
Query: 74 GTKTDHYAMGA 84
G K D GA
Sbjct: 176 GEKGDRGETGA 186
>gi|422384566|ref|ZP_16464706.1| hypothetical protein HMPREF9337_00798 [Propionibacterium acnes
HL096PA3]
gi|422387407|ref|ZP_16467523.1| hypothetical protein HMPREF9338_01020 [Propionibacterium acnes
HL096PA2]
gi|327330983|gb|EGE72726.1| hypothetical protein HMPREF9338_01020 [Propionibacterium acnes
HL096PA2]
gi|327333210|gb|EGE74934.1| hypothetical protein HMPREF9337_00798 [Propionibacterium acnes
HL096PA3]
Length = 232
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGM---DGIPGKDGLPGKDGIPGTNGTKTDH 79
G G+DGRDG+ G GL G PG NG+ DG+PG +G G+DG+PG G +
Sbjct: 75 GPAGVDGRDGVNGSAGLVGPVGPQGSPGLNGVKGPDGLPGVNGSDGRDGVPGRTGADGVN 134
Query: 80 YAMGADTKSFSDGV 93
GAD K ++G
Sbjct: 135 GVAGADGKDGANGA 148
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 32 GLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+ G DGLPG G DG+PGR G DG+ G G GKDG G +G +
Sbjct: 105 GVKGPDGLPGVNGSDGRDGVPGRTGADGVNGVAGADGKDGANGADGER 152
>gi|296227292|ref|XP_002759309.1| PREDICTED: collagen alpha-1(XIV) chain [Callithrix jacchus]
Length = 1796
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 24/42 (57%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G+PGE G G G G GIPG G PG+DG PG G
Sbjct: 1513 IQGMPGMPGEKGEKGDTGLPGPQGIPGGVGSPGRDGSPGQRG 1554
Score = 41.6 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 67
+ G G G GLPG G+ G G G DG PG+ GLPGKD
Sbjct: 1519 MPGEKGEKGDTGLPGPQGIPGGVGSPGRDGSPGQRGLPGKD 1559
Score = 41.6 bits (96), Expect = 0.058, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
I G G+ G G G+ GL G G G G PG+DG PG+ G+PG +
Sbjct: 1513 IQGMPGMPGEKGEKGDTGLPGPQGIPGGVGSPGRDGSPGQRGLPGKD 1559
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
+ G PG+ G G G G+PG G+PG G PG +G+ G D
Sbjct: 1513 IQGMPGMPGEKGEKGDTGLPGPQGIPGGVGSPGRDGSPGQRGLPGKD 1559
>gi|194222045|ref|XP_001496580.2| PREDICTED: collagen alpha-1(IV) chain [Equus caballus]
Length = 1712
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 36/67 (53%), Gaps = 15/67 (22%)
Query: 27 ISGRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKDGL---------PGKDGIPG 71
+ G +G G GLPGE PGLDGIPG G G+PGK G PG DGIPG
Sbjct: 1144 LPGSVGYPGSPGLPGEKGDKGLPGLDGIPGIKGEAGLPGKPGPSGPAGQKGEPGSDGIPG 1203
Query: 72 TNGTKTD 78
+ G K +
Sbjct: 1204 SAGEKGE 1210
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 31/55 (56%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG GL G+ G PG PG G G G+ G PG+ G PG G+PG G K DH
Sbjct: 897 TGQSGLPGLPGQQGTPGLPGFPGPKGEMGVMGTPGQPGSPGPAGVPGLPGEKGDH 951
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G S I G G G GLPG PG G+PG G G+PG DG+PG G G G
Sbjct: 1123 EKGEKGSAGIPGMPGSPGPKGLPGSVGYPGSPGLPGEKGDKGLPGLDGIPGIKGEAGLPG 1182
Query: 75 TKTDHYAMGADTKSFSDGVLPSVQRAIAAGLVIYRF 110
G + SDG+ S GL F
Sbjct: 1183 KPGPSGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGF 1218
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G++G+PG G PG G PG G + Y
Sbjct: 532 GFPGQPGAKGDRGLPGRDGLEGLPGPQGAPGLMGQPGAKGEPGEIY 577
>gi|6676|emb|CAA40299.1| alpha1(IV) collagen [Caenorhabditis elegans]
Length = 1758
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G G +G DG PG PG G PG G DG PG G+PG+DG+ G G + +H
Sbjct: 914 AGAPGQNGMDGYPGAPGDQGYPGSPGQDGYPGPSGIPGEDGLVGFPGLRGEH 965
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 28/48 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G DGLPG G +GIPG NG DG PG GL G G G NG
Sbjct: 103 GHPGLQGLDGLPGLKGEEGIPGCNGTDGFPGMPGLAGPPGQSGQNGNP 150
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I+G GL G GLPG PG DGIPG+ G++G G+DG PG G PG G +
Sbjct: 1104 ITGMPGLKGESGLPGLPGRQGNDGIPGQPGLEGECGEDGFPGSPGQPGYPGQQ 1156
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 20 GRAISTVISGRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR + I G+ GL+G DG PG PG G PG+ G +G G G+PG++G+PG G
Sbjct: 1121 GRQGNDGIPGQPGLEGECGEDGFPGSPGQPGYPGQQGREGEKGYPGIPGENGLPGLRG 1178
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 23 ISTVISGRIGLDGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPGKDGIPGTNG 74
I ++G+ G+DG GLPG+ G DG+PG G DG PG G PG DG+PG G
Sbjct: 724 IVNQVAGQPGVDGMPGLPGDRGADGLPGLPGPVGPDGYPGTPGEPGMDGLPGFPG 778
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK------------DGLPGKD 67
G A + + G G GRDGLPG PG G G NG DG PG+ DG G+D
Sbjct: 837 GDAGAAGLPGPDGYPGRDGLPGTPGYPGEAGMNGQDGAPGQPGSRGESGLVGIDGKKGRD 896
Query: 68 GIPGTNG 74
G PGT G
Sbjct: 897 GTPGTRG 903
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Query: 31 IGLDGRDGLPGE---------PGLDGIPGRNGMDGI---PGKDGLPGKDGIPGTNGTKTD 78
G G+DG PG PG DG PGR+G+ G PG+ G+ G+DG PG G++ +
Sbjct: 824 FGFPGQDGYPGPNGDAGAAGLPGPDGYPGRDGLPGTPGYPGEAGMNGQDGAPGQPGSRGE 883
Query: 79 HYAMGADTKSFSDGV 93
+G D K DG
Sbjct: 884 SGLVGIDGKKGRDGT 898
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 9/50 (18%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGT 72
GR G +G G PG+PG+ DG PGR+G+DG+PG+ PG++G+PG
Sbjct: 1390 GRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGR---PGREGLPGP 1436
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G DG G PG PG +G PG G+ G+PG+ G G +G PG G
Sbjct: 1355 LEGDCGEDGYPGAPGAPGSNGYPGERGLPGVPGQQGRSGDNGYPGAPG 1402
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G G GLPG+ GL G PG+ G G PG DG PG G+ G G D GA +
Sbjct: 1451 NGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLSGMPGHGGDQGFQGAAGR 1510
Query: 88 SFSDGV 93
+ + G+
Sbjct: 1511 TGNPGL 1516
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGT 72
R + ++ + G G +G PGE G G+PG NG+ G PGK G PG DG PG
Sbjct: 1430 REGLPGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGP 1489
Query: 73 NG 74
G
Sbjct: 1490 PG 1491
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---------GIPGTNG 74
+ + G G G DG+PG+PGL+G G +G G PG+ G PG+ GIPG NG
Sbjct: 1113 ESGLPGLPGRQGNDGIPGQPGLEGECGEDGFPGSPGQPGYPGQQGREGEKGYPGIPGENG 1172
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 31/58 (53%), Gaps = 12/58 (20%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGI------------PGKDGLPGKDGIPGTNG 74
G G G+DG PG G G PG+NGMDG PG+DG PG GIPG +G
Sbjct: 897 GTPGTRGQDGGPGYSGEAGAPGQNGMDGYPGAPGDQGYPGSPGQDGYPGPSGIPGEDG 954
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
G PGE GL G+ G+ G DG+PG G+PG +G+PG G + GA S+G
Sbjct: 1321 GYPGERGLPGLDGKRGHDGLPGAPGVPGVEGVPGLEGDCGEDGYPGAPGAPGSNGY 1376
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGKDGIPGTNG 74
+ G+ G DG G PG PG++G+PG G DG PG G PG +G PG G
Sbjct: 1331 LDGKRGHDGLPGAPGVPGVEGVPGLEGDCGEDGYPGAPGAPGSNGYPGERG 1381
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
G +G DG PG PGL G PG++G +G PG+ GL G G G N
Sbjct: 124 GCNGTDGFPGMPGLAGPPGQSGQNGNPGRPGLSGPPGEGGVN 165
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 35/69 (50%), Gaps = 20/69 (28%)
Query: 27 ISGRIGLDG------RDGLPG-----------EPGLDGIPGRNGMDGIPGKDGL---PGK 66
GR GLDG R+GLPG +PG +G PG G G+PG +GL PGK
Sbjct: 1415 FPGRDGLDGLPGRPGREGLPGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGK 1474
Query: 67 DGIPGTNGT 75
G PG GT
Sbjct: 1475 AGYPGAPGT 1483
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G +G DG G PGEPG+DG+PG G+ G PG G G+ G G +G
Sbjct: 752 LPGPVGPDGYPGTPGEPGMDGLPGFPGLHGEPGMRGQQGEVGFNGIDG 799
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 37/83 (44%), Gaps = 26/83 (31%)
Query: 29 GRIGLDGRDGLPGEPGLD-----------------------GIPGRN---GMDGIPGKDG 62
G +G +G DG GEPGLD G PG N G G+PG DG
Sbjct: 790 GEVGFNGIDGDCGEPGLDGYPGAPGAPGAPGETGFGFPGQDGYPGPNGDAGAAGLPGPDG 849
Query: 63 LPGKDGIPGTNGTKTDHYAMGAD 85
PG+DG+PGT G + G D
Sbjct: 850 YPGRDGLPGTPGYPGEAGMNGQD 872
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 4 VQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI-----P 58
+ GM E DR + G G G GLPGEPG G PG +G+ G P
Sbjct: 412 IDGMPGYTEKGDRGE---------DGYPGFAGEPGLPGEPGDCGYPGEDGLPGYDIQGPP 462
Query: 59 GKDGLPGKDGIPGTNG 74
G DG G+DG PG G
Sbjct: 463 GLDGQSGRDGFPGIPG 478
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 29/57 (50%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D G + +G G G DG PG PGL G+PG G G G G G G+PGT G
Sbjct: 1465 DNGLSGPPGKAGYPGAPGTDGYPGPPGLSGMPGHGGDQGFQGAAGRTGNPGLPGTPG 1521
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 31/59 (52%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
D G S G GL G G PG GLDG+PG G +GIPG +G G G+PG G
Sbjct: 83 DFGDMGSKGARGDRGLPGSPGHPGLQGLDGLPGLKGEEGIPGCNGTDGFPGMPGLAGPP 141
>gi|358415480|ref|XP_003583119.1| PREDICTED: collagen alpha-1(XIV) chain-like [Bos taurus]
Length = 1797
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ + G G+PGE G G G G G+PG G PG+DG PG G
Sbjct: 1512 LSIQGMPGMPGEKGEKGEIGLPGPQGVPGSVGSPGRDGSPGQRG 1555
Score = 42.4 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
I G G+ G G GE GL G G G G PG+DG PG+ G PG +
Sbjct: 1514 IQGMPGMPGEKGEKGEIGLPGPQGVPGSVGSPGRDGSPGQRGFPGKD 1560
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G PG+ G G G G+PG G+PG G PG +G+
Sbjct: 1514 IQGMPGMPGEKGEKGEIGLPGPQGVPGSVGSPGRDGS 1550
>gi|313222316|emb|CBY39267.1| unnamed protein product [Oikopleura dioica]
Length = 617
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
+G++G G+DG PG+PG++G PGR G PG+ GL G G G G + D A G+
Sbjct: 394 AGKLGWPGKDGEPGKPGMNGKPGRKARPGYPGRIGLNGFPGSAGGQGKEGDEGAAGS 450
>gi|410967728|ref|XP_003990368.1| PREDICTED: collagen alpha-1(XXIV) chain [Felis catus]
Length = 1660
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNG 74
D G T G G++G GL GEPG G PG G +G+ GKDGL PG G+PG +G
Sbjct: 959 DAGPPGETGAEGPSGIEGEAGLQGEPGAKGEPGAPGEEGLQGKDGLKGNPGGRGLPGEDG 1018
Query: 75 TKTDHYAMGAD 85
K + GA
Sbjct: 1019 EKGETGLPGAS 1029
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+G+ G+ G GLPG G+ G G +G+ G GK GLPGK G+PGT G+
Sbjct: 1221 AGKPGIPGLPGLPGPKGMQGYHGADGISGNSGKVGLPGKQGLPGTRGS 1268
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGKDGIPG 71
++ D G+ ++G+ G G G+ G+PGL G PG G ++G PG GLPG G PG
Sbjct: 905 EKGDQGKRGPYGLTGKTGNPGERGIQGKPGLQGPPGSTGDRGLEGEPGPRGLPGDAGPPG 964
Query: 72 TNGTK 76
G +
Sbjct: 965 ETGAE 969
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G GL G G+ G G DGI G +G G+PGK GLPG G PG G
Sbjct: 1226 IPGLPGLPGPKGMQGYHGADGISGNSGKVGLPGKQGLPGTRGSPGRAG 1273
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 28 SGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
SG++GL G+ GLP G PG G G G G G GLPG G+PG G +
Sbjct: 1251 SGKVGLPGKQGLPGTRGSPGRAGPAGSPGPRGAKGPSGLPGSPGVPGPKGEQ 1302
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 30/60 (50%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G G GL GE G +G G+ G G GK G+PG G+PG G + H A G S
Sbjct: 1192 GEPGDQGEQGLKGERGSEGPKGKKGTPGPAGKPGIPGLPGLPGPKGMQGYHGADGISGNS 1251
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GL G GLPG EPG+ G G G G PG+ G+ G +G PG G +
Sbjct: 524 MQGDKGLKGHPGLPGLRGEPGIPGFTGNIGSRGYPGRQGVAGPEGNPGPKGIR 576
>gi|359072557|ref|XP_003586965.1| PREDICTED: collagen alpha-1(XIV) chain-like [Bos taurus]
Length = 1797
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ + G G+PGE G G G G G+PG G PG+DG PG G
Sbjct: 1512 LSIQGMPGMPGEKGEKGEIGLPGPQGVPGSVGSPGRDGSPGQRG 1555
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
I G G+ G G GE GL G G G G PG+DG PG+ G PG +
Sbjct: 1514 IQGMPGMPGEKGEKGEIGLPGPQGVPGSVGSPGRDGSPGQRGFPGKD 1560
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G PG+ G G G G+PG G+PG G PG +G+
Sbjct: 1514 IQGMPGMPGEKGEKGEIGLPGPQGVPGSVGSPGRDGS 1550
>gi|354471419|ref|XP_003497940.1| PREDICTED: gliomedin [Cricetulus griseus]
Length = 548
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 37 DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
+G G+PGL G G G +G GK GLPG G PG G K D +G+
Sbjct: 156 NGSDGQPGLQGPKGEKGANGKRGKMGLPGATGNPGERGEKGDAGELGS 203
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 26/50 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G +G+ G G PG G PG G G G+ G PG +G PG G K D
Sbjct: 169 GEKGANGKRGKMGLPGATGNPGERGEKGDAGELGSPGNEGPPGQKGEKGD 218
>gi|423270397|ref|ZP_17249368.1| hypothetical protein HMPREF1079_02450 [Bacteroides fragilis
CL05T00C42]
gi|423275371|ref|ZP_17254316.1| hypothetical protein HMPREF1080_02969 [Bacteroides fragilis
CL05T12C13]
gi|392698321|gb|EIY91503.1| hypothetical protein HMPREF1079_02450 [Bacteroides fragilis
CL05T00C42]
gi|392702852|gb|EIY95997.1| hypothetical protein HMPREF1080_02969 [Bacteroides fragilis
CL05T12C13]
Length = 691
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G DG DG G+ G+DG G++G DG G+DG GKDG GT+G
Sbjct: 118 GKDGQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDGKDGQDGTDG 163
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G DG+DG G+ G DG G++G DG GKDG G DG G G K
Sbjct: 136 GQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDK 180
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G +G DG G+ G DG G++G+DG G+DG GKDG GT+G
Sbjct: 109 GQNGQNGTDGKDGQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDG 154
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G+DG+D G+ G DG G++G DG G+DG GKDG GT+GT
Sbjct: 130 GQDGIDGQD---GQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGT 173
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 29 GRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G DG+ DG+ G+ G DG G++G DG GKDG G DG G +GT
Sbjct: 121 GQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGT 170
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G DG DG G+ G DG G++G DG G+DG G DG G G
Sbjct: 134 IDGQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDKG 181
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 27/47 (57%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G DG+DG G G DG G +G DG G DG G +G G NGT
Sbjct: 139 GQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDKGQNGT 185
>gi|326916335|ref|XP_003204463.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(IX) chain-like
[Meleagris gallopavo]
Length = 960
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 28 SGRIGLDGRDGLP------GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
SG G+DGR+G+P GEPG G PG G G+PG G PG GIPG G +
Sbjct: 535 SGLPGVDGREGIPGMPGAKGEPGKPGAPGDTGPQGLPGLPGSPGMKGIPGPKGNR 589
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G++G G GE GL G+ GR G+ G+PG G PGK G PG G +
Sbjct: 520 QGTRGINGLPGPKGESGLPGVDGREGIPGMPGAKGEPGKPGAPGDTGPQ 568
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 27/50 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G GLPG PG+ GIPG G G PG G+ G G PG G + +
Sbjct: 563 GDTGPQGLPGLPGSPGMKGIPGPKGNRGPPGVPGVMGNSGKPGEQGPEGE 612
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK------DGIPGTNGTK 76
I+G G G GLPG G +GIPG G G PGK G PG G+PG+ G K
Sbjct: 525 INGLPGPKGESGLPGVDGREGIPGMPGAKGEPGKPGAPGDTGPQGLPGLPGSPGMK 580
>gi|426340699|ref|XP_004034265.1| PREDICTED: collagen alpha-1(VII) chain [Gorilla gorilla gorilla]
Length = 3156
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 30/61 (49%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
S + G G G DG PG PG G PG G G+ G GLPG G PG GT+ G
Sbjct: 1503 SAIAKGERGFPGADGRPGSPGRPGNPGTPGAPGLKGSPGLPGPHGDPGEQGTRGPKGEPG 1562
Query: 84 A 84
A
Sbjct: 1563 A 1563
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 31/55 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G G GLPG GL G G+ G GIPG G PGKDG+PG G K D MG
Sbjct: 2778 GEPGDKGSAGLPGLRGLPGPQGQPGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMG 2832
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GLDGR GL G+PG PG +G +G GK G PG+DG+PG G +
Sbjct: 1985 GPPGLDGRSGLDGKPG---APGPSGPNGAAGKAGDPGRDGLPGLRGEQ 2029
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GLDG G PG PGL G G G G+PG+ G PGK+G+ G G +
Sbjct: 2842 VKGACGLDGEKGDKGEAGPPGRPGLAGQKGEMGEPGVPGQSGAPGKEGLIGPKGDR 2897
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 33/68 (48%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
D+G + G G G +G PG+ G G PG G G+PG GLPG G PG G
Sbjct: 2749 DMGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLPGPQGQPGAAGIPG 2808
Query: 78 DHYAMGAD 85
D + G D
Sbjct: 2809 DPGSPGKD 2816
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKDGIPG 71
G+ GL+G++G PG+PG DG G G G P G+DG G+ G PG
Sbjct: 2048 GKPGLNGKNGEPGDPGEDGRKGEKGDSGAPGREGRDGPKGERGAPG 2093
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD--GIPGTNGTK 76
G G DG G PG PG G+PG G G PG G PG+ G+PG G K
Sbjct: 2475 GASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEK 2524
>gi|170596886|ref|XP_001902932.1| Collagen alpha [Brugia malayi]
gi|158589075|gb|EDP28216.1| Collagen alpha, putative [Brugia malayi]
Length = 1772
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G + ++G G+ G DGLPG E G+ GIPG+ G DG PG G GKDG PG G +
Sbjct: 1311 GEEARSGMAGASGMPGTDGLPGYRGEKGISGIPGKRGRDGAPGLPGPAGKDGYPGAKGER 1370
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 6/55 (10%)
Query: 27 ISGRIGLDGRDGLPGEPG------LDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G G+DG G PG PG LDG+PG G+DG PG G+PG +G+PG +G
Sbjct: 972 LKGEPGIDGMPGQPGFPGMSGDRGLDGLPGLQGVDGEPGLPGVPGLEGLPGLSGA 1026
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I G+ G DG GLPG G DG PG G G+ G G+PGKDGI G G +
Sbjct: 1342 IPGKRGRDGAPGLPGPAGKDGYPGAKGERGLSGFPGIPGKDGISGYLGER 1391
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 15 DRRDIGRAISTVISGRIGLDG------RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
++ DIGR+ G+ G+ G GLPG PG+ G PG +GM G G GLPG+ G
Sbjct: 1124 EQGDIGRSGGRGFDGQPGIPGVKGEFGLPGLPGIPGIQGPPGLDGMLGQKGHAGLPGEPG 1183
Query: 69 IPGTNGTKTDHYAMGADTKSFSDGVL 94
G G +H G +S S G +
Sbjct: 1184 FDGQRGKSGEHGRKGEIGQSGSPGSI 1209
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+SG G+ G+DG+ G G G+ G GM G PG GLPG G+PG GT+ D
Sbjct: 1372 LSGFPGIPGKDGISGYLGERGVSGVPGMPGYPGNVGLPGLSGMPGQKGTRGD 1423
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 29/50 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GLDG G GEPG+ G PG+ G GIPG GL G DG PG G
Sbjct: 763 LPGSRGLDGLPGRVGEPGIIGYPGKLGQSGIPGHPGLLGDDGYPGIPGES 812
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPGKDGIPGTNG 74
GRA G GL GR+G+PG GL GI G G+ G+PGK G G+ G PG NG
Sbjct: 908 GRAGEAGTPGIPGLKGRNGIPGRDGLPGIKGERGFAGLPGLPGKVGAIGEAGTPGENG 965
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG 65
I G+IG GR G G PG+ G+ GRN GIPG+DGLPG
Sbjct: 900 IPGKIGRPGRAGEAGTPGIPGLKGRN---GIPGRDGLPG 935
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 30/48 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++G G G GLPG PG G PGR G G PG GL G++GIPG +G
Sbjct: 885 LAGIPGKKGERGLPGIPGKIGRPGRAGEAGTPGIPGLKGRNGIPGRDG 932
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
R +GR G G+ G DGLPG PG LDG+PGR G GI G G G+ GIPG
Sbjct: 737 RSLVGRDGYNGAPGLKGMRGSDGLPGLPGSRGLDGLPGRVGEPGIIGYPGKLGQSGIPGH 796
Query: 73 NGTKTD 78
G D
Sbjct: 797 PGLLGD 802
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G++G G G PGE GL G P G+ G PG DG+PG+ G PG +G +
Sbjct: 948 LPGKVGAIGEAGTPGENGLFGYP---GLKGEPGIDGMPGQPGFPGMSGDR 994
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 19 IGRAISTVISGRIGLDGRDGLPG-----EPGLDGIPGRNGMDGIP---GKDGLPGKDGIP 70
+G A + G G+ G GLPG PGL+G PGR+G G+P G GL G G P
Sbjct: 434 VGDAGAPGTPGDCGVPGEQGLPGFDIQGPPGLEGRPGRDGFTGVPGDVGDHGLAGLKGFP 493
Query: 71 GTNGTKTDHYAM 82
GT +K M
Sbjct: 494 GTGVSKVGPPGM 505
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+SG GLDG GL G G G+PG G++G+PG G PG G+PG G + +
Sbjct: 990 MSGDRGLDGLPGLQGVDGEPGLPGVPGLEGLPGLSGAPGFAGLPGIKGIRGE 1041
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 9/57 (15%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGR---------NGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G GL GEPG+DG+PG+ G+DG+PG G+ G+ G+PG G +
Sbjct: 962 GENGLFGYPGLKGEPGIDGMPGQPGFPGMSGDRGLDGLPGLQGVDGEPGLPGVPGLE 1018
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G+DG GLPG PGL+G+P G+ G PG GLPG GI G G
Sbjct: 999 LPGLQGVDGEPGLPGVPGLEGLP---GLSGAPGFAGLPGIKGIRGEPG 1043
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 33/66 (50%), Gaps = 18/66 (27%)
Query: 27 ISGRIGLDGRDGLPG---------EPGLDG---------IPGRNGMDGIPGKDGLPGKDG 68
+ GR G+ GRDGLPG PGL G PG NG+ G PG G PG DG
Sbjct: 921 LKGRNGIPGRDGLPGIKGERGFAGLPGLPGKVGAIGEAGTPGENGLFGYPGLKGEPGIDG 980
Query: 69 IPGTNG 74
+PG G
Sbjct: 981 MPGQPG 986
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPGKDGIPGT 72
R +G+A + G G G +G G PGL GIPG+ G+ GIPGK G PG+ G GT
Sbjct: 856 RGHVGKAGAQGKIGVAGAKGAEGENGYPGLAGIPGKKGERGLPGIPGKIGRPGRAGEAGT 915
Query: 73 NG 74
G
Sbjct: 916 PG 917
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I G G GR PG PG G+PG G G+PG+DG+PG G PG+ G
Sbjct: 1035 IKGIRGEPGRFAHPGPPGDVGLPGPQGPIGLPGQDGIPGTKGEPGSLGNS 1084
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR G G G+PG G +GIPGR+G+ GI G+ G G G+PG G
Sbjct: 908 GRAGEAGTPGIPGLKGRNGIPGRDGLPGIKGERGFAGLPGLPGKVGA 954
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 10/72 (13%)
Query: 14 HDRR-DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
H R+ +IG++ S G IG G G+PGE GL G+PG +PG +G G GIPG
Sbjct: 1194 HGRKGEIGQSGSP---GSIGPVGAPGIPGEVGLSGLPG------MPGDEGSAGLPGIPGI 1244
Query: 73 NGTKTDHYAMGA 84
G + D A+G+
Sbjct: 1245 KGLRGDAGAVGS 1256
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 17/68 (25%)
Query: 28 SGRIGLDGRDGLPG---EPG--------------LDGIPGRNGMDGIPGKDGLPGKDGIP 70
G IGL G+DG+PG EPG +G PGR+G+DG G GLPG G P
Sbjct: 1060 QGPIGLPGQDGIPGTKGEPGSLGNSYSGLPGLQGTEGEPGRDGIDGPVGFPGLPGMIGYP 1119
Query: 71 GTNGTKTD 78
G G + D
Sbjct: 1120 GAKGEQGD 1127
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
ISG +G G G+PG PG G G G+ G+PG+ G G DG+PG G +
Sbjct: 1384 ISGYLGERGVSGVPGMPGYPGNVGLPGLSGMPGQKGTRGDDGLPGVPGLQ 1433
>gi|55639565|ref|XP_509578.1| PREDICTED: complement C1q and tumor necrosis factor-related
protein 9A isoform 2 [Pan troglodytes]
gi|410047626|ref|XP_003952422.1| PREDICTED: complement C1q and tumor necrosis factor-related
protein 9A isoform 1 [Pan troglodytes]
Length = 333
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 3 RVQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG 62
R+ +L +E+ + S + G G+PG P +G+PGR+G DG G G
Sbjct: 2 RIWWLLLAIEI--------CTGNINSQDMCRQGHPGIPGNPSHNGLPGRDGRDGAKGDKG 53
Query: 63 ---LPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
PG+ G PG +GT + GAD K ++G+
Sbjct: 54 DAGEPGRPGSPGKDGTSGEKGERGADGKVEAEGI 87
>gi|363740415|ref|XP_415514.3| PREDICTED: collagen alpha-1(XXVII) chain [Gallus gallus]
Length = 1745
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
D+G+ G G G G G PG G+ GR G +G PG DG+PGKDG+PG G +
Sbjct: 1286 DVGQKGKQGARGSAGSRGSPGTLGLPGPRGVVGRQGQEGAPGVDGVPGKDGVPGVLGEQG 1345
Query: 78 D 78
D
Sbjct: 1346 D 1346
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G+ GR G G PG+DG+PG++G+ G+ G+ G G++G+ G G +
Sbjct: 1310 LPGPRGVVGRQGQEGAPGVDGVPGKDGVPGVLGEQGDDGEEGVTGMTGKR 1359
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
+IG G+ GL G G+ G+PG G+PG G+ G G+ GL G G PG +G K
Sbjct: 1030 EIGHKGPPGPMGQPGLAGEPGMKGDPGQLGVPGEQGLIGQRGEMGLEGDSGPPGPDGAKG 1089
Query: 78 DHYAMGADTKSFSDGV 93
D G D + G
Sbjct: 1090 DKGEQGLDGEKGEKGT 1105
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 28/49 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
SG G DG G GE GLDG G G +G+ GK+G PG GI G G +
Sbjct: 1079 SGPPGPDGAKGDKGEQGLDGEKGEKGTEGLKGKEGPPGYPGITGVRGPE 1127
>gi|114648995|ref|XP_001152983.1| PREDICTED: complement C1q and tumor necrosis factor-related
protein 9A isoform 1 [Pan troglodytes]
gi|114648997|ref|XP_522628.2| PREDICTED: complement C1q and tumor necrosis factor-related
protein 9A isoform 2 [Pan troglodytes]
Length = 333
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDG---LPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G G+PG PG +G+PGR+G DG G G PG+ G PG +GT + GAD K +
Sbjct: 26 GHPGIPGNPGHNGLPGRDGRDGAKGDKGDAGEPGRPGSPGKDGTSGEKGERGADGKVEAK 85
Query: 92 GV 93
G+
Sbjct: 86 GI 87
>gi|308481426|ref|XP_003102918.1| hypothetical protein CRE_31186 [Caenorhabditis remanei]
gi|308260621|gb|EFP04574.1| hypothetical protein CRE_31186 [Caenorhabditis remanei]
Length = 443
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGKDGIPGTN-----GTKTDHY 80
G+ G G DGLPGEPGL+G PG G M G PG G PG+ G PG G K +HY
Sbjct: 237 GQGGYPGLDGLPGEPGLNGEPGTPGQYEMPGHPGVPGEPGQVGYPGKREFTGIGEKREHY 296
Query: 81 AM 82
+
Sbjct: 297 GL 298
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 28 SGRIGLDGRDGLPGEPGLD--GIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+G +G G DG PG PG + G+PG G G PG DGLPG+ G+ G GT
Sbjct: 210 AGHLGSPGDDGYPGAPGQNTYGLPGHLGQGGYPGLDGLPGEPGLNGEPGT 259
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 33 LDGRDGLPGEPGLDGIPG---RNGMDGIP------GKDGLPGKDGIPGTNGTKT 77
G +GLPG G DGIPG NG+DG P G G PG DG PG G T
Sbjct: 176 FSGENGLPGFCGQDGIPGLKLENGLDGQPSYLRSAGHLGSPGDDGYPGAPGQNT 229
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG---LPGKDGIPGTNG 74
GL G G G PGLDG+PG G++G PG G +PG G+PG G
Sbjct: 230 YGLPGHLGQGGYPGLDGLPGEPGLNGEPGTPGQYEMPGHPGVPGEPG 276
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDH 79
G+ + G G+PGEPG G PG+ GI K GLPG+ G PG +G D+
Sbjct: 261 GQYEMPGHPGVPGEPGQVGYPGKREFTGIGEKREHYGLPGQPGTPGLDGEFQDN 314
>gi|60360624|dbj|BAD90325.1| mKIAA4231 protein [Mus musculus]
Length = 1467
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 34/60 (56%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A S I G G DG+DG PGEPG +G+PG G G G G G +GIPG
Sbjct: 444 EPGARGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERGPSGFRGPAGPNGIPG 503
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR + G G+ G G+PG PG+ G GRNG G G GL G++G+PG NG
Sbjct: 239 GRPGERGLPGPPGIKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGDNGA 297
>gi|26334217|dbj|BAC30826.1| unnamed protein product [Mus musculus]
Length = 1464
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 34/60 (56%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A S I G G DG+DG PGEPG +G+PG G G G G G +GIPG
Sbjct: 441 EPGARGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERGPSGFRGPAGPNGIPG 500
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLD---GIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GR + G G+ G G+PG PG+ G GRNG G G GL G++G+PG NG
Sbjct: 236 GRPGERGLPGPPGIKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGDNGAP 295
Query: 77 TDHYAMGA 84
GA
Sbjct: 296 XPMGPRGA 303
>gi|74184771|dbj|BAE27985.1| unnamed protein product [Mus musculus]
Length = 1464
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 34/60 (56%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A S I G G DG+DG PGEPG +G+PG G G G G G +GIPG
Sbjct: 441 EPGARGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERGPSGFRGPAGPNGIPG 500
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR + G G+ G G+PG PG+ G GRNG G G GL G++G+PG NG
Sbjct: 236 GRPGERGLPGPPGIKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGDNGA 294
>gi|291393225|ref|XP_002712996.1| PREDICTED: procollagen, type IV, alpha 1-like [Oryctolagus
cuniculus]
Length = 1308
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
+ G ST I G G G G PG G G+PG+ G G G+ G PG+DGIPG+ G K
Sbjct: 750 EKGEKGSTGIPGMPGSPGPKGSPGSAGYPGLPGQPGPTGPAGQKGEPGRDGIPGSAGEKG 809
Query: 78 DHYAMG 83
+ + G
Sbjct: 810 EPGSKG 815
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G K DH
Sbjct: 557 TGQSGLPGLPGQQGTPGIPGFPGPKGEMGVMGTPGQPGSPGPAGAPGLPGEKGDH 611
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G GIPG G K +
Sbjct: 527 VKGEKGFPGFPGLDMPGPKGDKGAQGLPGLTGQSGLPGLPGQQGTPGIPGFPGPKGEMGV 586
Query: 82 MGADTKSFSDG 92
MG + S G
Sbjct: 587 MGTPGQPGSPG 597
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 22/38 (57%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
G G +GLPG PG G G G G PG+ GLPG+ G
Sbjct: 432 GPPGAEGLPGSPGFQGPQGDRGFPGTPGRPGLPGEKGA 469
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 26/46 (56%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
L G G PG PG G+PGR G G G GLPG G PG+ G K +
Sbjct: 325 LKGDKGDPGFPGQPGMPGRAGSPGRDGHPGLPGPKGSPGSVGLKGE 370
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
IG+ GR G G+PG+ G PG G G G G+PG G PG G+
Sbjct: 727 IGIPGRPGDKGDPGVAGFPGSPGEKGEKGSTGIPGMPGSPGPKGS 771
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG---LPGKDGIPGTNGTKTD 78
+ G+ G G G GEPG DGIPG G G PG G PG G PG G K +
Sbjct: 780 LPGQPGPTGPAGQKGEPGRDGIPGSAGEKGEPGSKGDVGFPGLAGSPGIPGPKGE 834
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 18 DIGRAISTVISGRIGLDGRDG-------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIP 70
D G+A G GL G G LPG PG +G+PG G G G G PG G P
Sbjct: 402 DKGQAGFPGSPGSPGLPGPKGEAGRVVPLPGPPGAEGLPGSPGFQGPQGDRGFPGTPGRP 461
Query: 71 GTNGTK 76
G G K
Sbjct: 462 GLPGEK 467
>gi|281346765|gb|EFB22349.1| hypothetical protein PANDA_014033 [Ailuropoda melanoleuca]
Length = 1513
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 34/65 (52%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ G T SG GL G+ G PG PG G G G+ G PG+ G PG G+PG G
Sbjct: 688 DKGSQGLPGLTGQSGHPGLPGQQGTPGVPGFPGPKGEMGVMGTPGQPGSPGPAGLPGLPG 747
Query: 75 TKTDH 79
K DH
Sbjct: 748 EKGDH 752
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 34/65 (52%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKDGL---------PGKDGIPGTN 73
G +G G GLPGE PG DGIPG G G+PGK G PG DGIPG+
Sbjct: 947 GTVGYPGSPGLPGEKGDKGLPGSDGIPGIKGEAGLPGKPGPTGPAGQKGEPGSDGIPGSA 1006
Query: 74 GTKTD 78
G K +
Sbjct: 1007 GEKGE 1011
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 40/96 (41%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ + G A + G G G G G PG G+PG G G+PG DG+PG G G G
Sbjct: 924 EKGEKGSAGIPGVPGSPGPKGSPGTVGYPGSPGLPGEKGDKGLPGSDGIPGIKGEAGLPG 983
Query: 75 TKTDHYAMGADTKSFSDGVLPSVQRAIAAGLVIYRF 110
G + SDG+ S GL F
Sbjct: 984 KPGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGF 1019
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G++G+PG G PG G PG G + Y
Sbjct: 333 GFPGQPGAKGDRGLPGRDGLEGLPGPQGSPGLMGQPGAKGEPGEIY 378
>gi|149018699|gb|EDL77340.1| rCG25821 [Rattus norvegicus]
Length = 1513
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 22/40 (55%)
Query: 37 DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
DGL GE G GIPGR G G G G PGK G G G K
Sbjct: 1431 DGLNGEQGDSGIPGRRGERGDAGSQGSPGKRGASGDRGPK 1470
>gi|395816882|ref|XP_003781913.1| PREDICTED: collagen alpha-5(VI) chain [Otolemur garnettii]
Length = 2817
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 26/48 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G+DG DGL GE G G PG G G PG G PG G PG G K
Sbjct: 1460 GEQGVDGIDGLDGEEGFHGFPGTKGEKGDPGSQGSPGSRGPPGGYGEK 1507
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 23/47 (48%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G G G G G G+DGI G DG G G PGT G K D
Sbjct: 1442 GCVGERGQKGAKGFSGHKGEQGVDGIDGLDGEEGFHGFPGTKGEKGD 1488
>gi|30851550|gb|AAH52398.1| Collagen, type III, alpha 1 [Mus musculus]
Length = 1464
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 34/60 (56%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A S I G G DG+DG PGEPG +G+PG G G G G G +GIPG
Sbjct: 441 EPGARGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERGPSGFRGPAGPNGIPG 500
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR + G G+ G G+PG PG+ G GRNG G G GL G++G+PG NG
Sbjct: 236 GRPGERGLPGPPGIKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGDNGA 294
>gi|57997107|emb|CAH10639.2| hypothetical protein [Homo sapiens]
Length = 157
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G +G +G DGL GE G +G+PGR G G G G PGK G PG G K
Sbjct: 94 EGEVGENGIDGLNGEQGDNGLPGRKGEKGDEGSQGSPGKRGTPGDRGAK 142
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTKTDHYAMG 83
G GL+G++G GE G+DG+ G G +G+PG+ G G + G PG GT D A G
Sbjct: 86 GNRGLNGQEGEVGENGIDGLNGEQGDNGLPGRKGEKGDEGSQGSPGKRGTPGDRGAKG 143
>gi|26339398|dbj|BAC33370.1| unnamed protein product [Mus musculus]
Length = 1464
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 34/60 (56%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A S I G G DG+DG PGEPG +G+PG G G G G G +GIPG
Sbjct: 441 EPGARGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERGPSGFRGPAGPNGIPG 500
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR + G G+ G G+PG PG+ G GRNG G G GL G++G+PG NG
Sbjct: 236 GRPGERGLPGPPGIKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGDNGA 294
>gi|53715049|ref|YP_101041.1| hypothetical protein BF3765 [Bacteroides fragilis YCH46]
gi|52217914|dbj|BAD50507.1| hypothetical protein [Bacteroides fragilis YCH46]
Length = 715
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G DG DG G+ G+DG G++G DG G+DG GKDG GT+G
Sbjct: 142 GKDGQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDGKDGQDGTDG 187
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G DG+DG G+ G DG G++G DG GKDG G DG G G K
Sbjct: 160 GQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDK 204
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G +G DG G+ G DG G++G+DG G+DG GKDG GT+G
Sbjct: 133 GQNGQNGTDGKDGQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDG 178
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G+DG+D G+ G DG G++G DG G+DG GKDG GT+GT
Sbjct: 154 GQDGIDGQD---GQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGT 197
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 29 GRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G DG+ DG+ G+ G DG G++G DG GKDG G DG G +GT
Sbjct: 145 GQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGT 194
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G DG DG G+ G DG G++G DG G+DG G DG G G
Sbjct: 158 IDGQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDKG 205
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 27/47 (57%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G DG+DG G G DG G +G DG G DG G +G G NGT
Sbjct: 163 GQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDKGQNGT 209
>gi|167535573|ref|XP_001749460.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772088|gb|EDQ85745.1| predicted protein [Monosiga brevicollis MX1]
Length = 940
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD------GIPGT 72
IG G+ G +GRDG G PG G+ G +G DG PG+DGLPG D G+ GT
Sbjct: 91 IGEQGDAGDQGQPGDNGRDGPKGYPGSPGVAGADGTDGRPGEDGLPGPDGDDGLPGLDGT 150
Query: 73 NGTKTDHYAMG 83
NG AMG
Sbjct: 151 NGVDGSDGAMG 161
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 18/93 (19%)
Query: 19 IGRAISTVISGRIGLDG---------------RDGLPGEPGLDG---IPGRNGMDGIPGK 60
+G A + I+GR G DG GLPG+ G DG +PG +G GI G+
Sbjct: 555 VGPAGNKGITGRPGRDGDIMPDGDKGLPGPSGERGLPGDKGDDGARGLPGFDGPKGIKGR 614
Query: 61 DGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
G+PG+DG PG +G K AMG + DG
Sbjct: 615 VGIPGRDGTPGRDGAKGQPGAMGQPGRDAEDGA 647
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 32/59 (54%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
D GR G G+ G DG G PG DG+PG +G DG+PG DG G DG G G K
Sbjct: 105 DNGRDGPKGYPGSPGVAGADGTDGRPGEDGLPGPDGDDGLPGLDGTNGVDGSDGAMGDK 163
Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 27 ISGRIGLDGRDGLP------GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I GR+G+ GRDG P G+PG G PGR+ DG G+ G +DG+PG G
Sbjct: 611 IKGRVGIPGRDGTPGRDGAKGQPGAMGQPGRDAEDGAKGQPGSNAEDGLPGPAG 664
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 25/42 (59%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GR G PG PG GI GR+G+DG PG G G G PG G K
Sbjct: 170 GRAGRPGRPGEAGIKGRDGLDGAPGSAGPDGDRGFPGYTGDK 211
>gi|336410622|ref|ZP_08591098.1| hypothetical protein HMPREF1018_03115 [Bacteroides sp. 2_1_56FAA]
gi|335944197|gb|EGN06021.1| hypothetical protein HMPREF1018_03115 [Bacteroides sp. 2_1_56FAA]
Length = 691
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G DG DG G+ G+DG G++G DG G+DG GKDG GT+G
Sbjct: 118 GKDGQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDGKDGQDGTDG 163
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G DG+DG G+ G DG G++G DG GKDG G DG G G K
Sbjct: 136 GQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDK 180
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G +G DG G+ G DG G++G+DG G+DG GKDG GT+G
Sbjct: 109 GQNGQNGTDGKDGQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDG 154
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G+DG+D G+ G DG G++G DG G+DG GKDG GT+GT
Sbjct: 130 GQDGIDGQD---GQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGT 173
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 29 GRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G DG+ DG+ G+ G DG G++G DG GKDG G DG G +GT
Sbjct: 121 GQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGT 170
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G DG DG G+ G DG G++G DG G+DG G DG G G
Sbjct: 134 IDGQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDKG 181
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 27/47 (57%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G DG+DG G G DG G +G DG G DG G +G G NGT
Sbjct: 139 GQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDKGQNGT 185
>gi|301778479|ref|XP_002924660.1| PREDICTED: collagen alpha-1(IV) chain-like [Ailuropoda melanoleuca]
Length = 1644
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 34/65 (52%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ G T SG GL G+ G PG PG G G G+ G PG+ G PG G+PG G
Sbjct: 819 DKGSQGLPGLTGQSGHPGLPGQQGTPGVPGFPGPKGEMGVMGTPGQPGSPGPAGLPGLPG 878
Query: 75 TKTDH 79
K DH
Sbjct: 879 EKGDH 883
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 34/65 (52%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKDGL---------PGKDGIPGTN 73
G +G G GLPGE PG DGIPG G G+PGK G PG DGIPG+
Sbjct: 1078 GTVGYPGSPGLPGEKGDKGLPGSDGIPGIKGEAGLPGKPGPTGPAGQKGEPGSDGIPGSA 1137
Query: 74 GTKTD 78
G K +
Sbjct: 1138 GEKGE 1142
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 40/96 (41%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ + G A + G G G G G PG G+PG G G+PG DG+PG G G G
Sbjct: 1055 EKGEKGSAGIPGVPGSPGPKGSPGTVGYPGSPGLPGEKGDKGLPGSDGIPGIKGEAGLPG 1114
Query: 75 TKTDHYAMGADTKSFSDGVLPSVQRAIAAGLVIYRF 110
G + SDG+ S GL F
Sbjct: 1115 KPGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGF 1150
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G++G+PG G PG G PG G + Y
Sbjct: 464 GFPGQPGAKGDRGLPGRDGLEGLPGPQGSPGLMGQPGAKGEPGEIY 509
>gi|414564528|ref|YP_006043489.1| collagen-like protein with amino-end fibronectin-binding domain
SclZ.9 [Streptococcus equi subsp. zooepidemicus ATCC
35246]
gi|338847593|gb|AEJ25805.1| collagen-like protein with amino-end fibronectin-binding domain
SclZ.9 [Streptococcus equi subsp. zooepidemicus ATCC
35246]
Length = 623
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIP------------GRNGMDGIPGKDGL 63
R D G G G DG G PG PG G+P G NG DG PG+DG
Sbjct: 335 RGDKGETGEKGPKGDTGKDGEPGKPGIPGPQGLPGPKGDPGKPGPRGENGKDGAPGRDGQ 394
Query: 64 PGKDGIPGTNGTKTDHYAMGA 84
GKDG PG G + + G
Sbjct: 395 NGKDGQPGPQGERGEQGPQGE 415
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ D + G G G G GEPG DG+PG G G PG G G+ G PG G
Sbjct: 265 DKEDTEIQKKLIKHGLNGPRGEKGPQGEPGRDGLPGPAGPKGEPGARGPAGEKGEPGKPG 324
Query: 75 TK 76
+
Sbjct: 325 AR 326
>gi|119628739|gb|EAX08334.1| hypothetical protein MGC48915, isoform CRA_a [Homo sapiens]
gi|119628740|gb|EAX08335.1| hypothetical protein MGC48915, isoform CRA_a [Homo sapiens]
Length = 333
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDG---LPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G G+PG PG +G+PGR+G DG G G PG+ G PG +GT + GAD K +
Sbjct: 26 GHPGIPGNPGHNGLPGRDGRDGAKGDKGDAGEPGRPGSPGKDGTSGEKGERGADGKVEAK 85
Query: 92 GV 93
G+
Sbjct: 86 GI 87
>gi|60683011|ref|YP_213155.1| hypothetical protein BF3553 [Bacteroides fragilis NCTC 9343]
gi|60494445|emb|CAH09241.1| hypothetical protein BF9343_3460 [Bacteroides fragilis NCTC 9343]
Length = 704
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G DG DG G+ G+DG G++G DG G+DG GKDG GT+G
Sbjct: 131 GKDGQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDGKDGQDGTDG 176
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G DG+DG G+ G DG G++G DG GKDG G DG G G K
Sbjct: 149 GQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDK 193
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G +G DG G+ G DG G++G+DG G+DG GKDG GT+G
Sbjct: 122 GQNGQNGTDGKDGQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDG 167
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G+DG+D G+ G DG G++G DG G+DG GKDG GT+GT
Sbjct: 143 GQDGIDGQD---GQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGT 186
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 29 GRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G DG+ DG+ G+ G DG G++G DG GKDG G DG G +GT
Sbjct: 134 GQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGT 183
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G DG DG G+ G DG G++G DG G+DG G DG G G
Sbjct: 147 IDGQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDKG 194
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 27/47 (57%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G DG+DG G G DG G +G DG G DG G +G G NGT
Sbjct: 152 GQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDKGQNGT 198
>gi|226423933|ref|NP_034060.2| collagen alpha-1(III) chain precursor [Mus musculus]
gi|5921190|sp|P08121.4|CO3A1_MOUSE RecName: Full=Collagen alpha-1(III) chain; Flags: Precursor
gi|575322|emb|CAA36279.1| type III collagen [Mus musculus]
gi|29144943|gb|AAH43089.1| Collagen, type III, alpha 1 [Mus musculus]
gi|37194882|gb|AAH58724.1| Collagen, type III, alpha 1 [Mus musculus]
gi|74180495|dbj|BAE34185.1| unnamed protein product [Mus musculus]
gi|74213663|dbj|BAE35633.1| unnamed protein product [Mus musculus]
gi|148664464|gb|EDK96880.1| procollagen, type III, alpha 1 [Mus musculus]
Length = 1464
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 34/60 (56%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A S I G G DG+DG PGEPG +G+PG G G G G G +GIPG
Sbjct: 441 EPGARGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERGPSGFRGPAGPNGIPG 500
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR + G G+ G G+PG PG+ G GRNG G G GL G++G+PG NG
Sbjct: 236 GRPGERGLPGPPGIKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGDNGA 294
>gi|423285458|ref|ZP_17264340.1| hypothetical protein HMPREF1204_03878 [Bacteroides fragilis HMW
615]
gi|404578973|gb|EKA83691.1| hypothetical protein HMPREF1204_03878 [Bacteroides fragilis HMW
615]
Length = 691
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G DG DG G+ G+DG G++G DG G+DG GKDG GT+G
Sbjct: 118 GKDGQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDGKDGQDGTDG 163
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G DG+DG G+ G DG G++G DG GKDG G DG G G K
Sbjct: 136 GQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDK 180
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G +G DG G+ G DG G++G+DG G+DG GKDG GT+G
Sbjct: 109 GQNGQNGTDGKDGQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDG 154
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G+DG+D G+ G DG G++G DG G+DG GKDG GT+GT
Sbjct: 130 GQDGIDGQD---GQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGT 173
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 29 GRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G DG+ DG+ G+ G DG G++G DG GKDG G DG G +GT
Sbjct: 121 GQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGT 170
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G DG DG G+ G DG G++G DG G+DG G DG G G
Sbjct: 134 IDGQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDKG 181
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 27/47 (57%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G DG+DG G G DG G +G DG G DG G +G G NGT
Sbjct: 139 GQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDKGQNGT 185
>gi|410947738|ref|XP_003980599.1| PREDICTED: collagen alpha-1(IV) chain [Felis catus]
Length = 1693
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 35/65 (53%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ G T SG GL G+ G PG PG+ G G G+ G PG+ G PG G+PG G
Sbjct: 868 DKGSPGLPGLTGQSGLPGLPGQQGTPGLPGIPGPKGEMGVMGTPGQPGSPGPAGVPGLPG 927
Query: 75 TKTDH 79
K DH
Sbjct: 928 EKGDH 932
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G++G+PG G+PG G PG G + Y
Sbjct: 513 GFPGQPGAKGDRGLPGRDGLEGLPGPQGVPGLMGQPGAKGEPGEIY 558
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GL G G+PG G G+PG+ G G G+ G PG DGIPG+ G K +
Sbjct: 1145 GLPGSAGIPGVKGEAGLPGKPGPAGPAGQKGEPGSDGIPGSAGEKGE 1191
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G +G G GLPG+ G G+PG G+ G+ G+ GLPGK G G G K +
Sbjct: 1127 GSVGYPGSPGLPGDKGDRGLPGSAGIPGVKGEAGLPGKPGPAGPAGQKGE 1176
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 27 ISGRIGLD--GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G GLD G G G PGL G+ G++G+ G+PG+ G PG GIPG G
Sbjct: 854 FPGFPGLDMPGPKGDKGSPGLPGLTGQSGLPGLPGQQGTPGLPGIPGPKG 903
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
L G G PG PGLD G+PG G G+PG G G G+PG G K +
Sbjct: 848 LKGEKGFPGFPGLDMPGPKGDKGSPGLPGLTGQSGLPGLPGQQGTPGLPGIPGPKGEMGV 907
Query: 82 MGADTKSFSDG 92
MG + S G
Sbjct: 908 MGTPGQPGSPG 918
>gi|383116076|ref|ZP_09936829.1| hypothetical protein BSHG_3121 [Bacteroides sp. 3_2_5]
gi|382973988|gb|EES85689.2| hypothetical protein BSHG_3121 [Bacteroides sp. 3_2_5]
Length = 691
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G DG DG G+ G+DG G++G DG G+DG GKDG GT+G
Sbjct: 118 GKDGQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDGKDGQDGTDG 163
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G DG+DG G+ G DG G++G DG GKDG G DG G G K
Sbjct: 136 GQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDK 180
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G +G DG G+ G DG G++G+DG G+DG GKDG GT+G
Sbjct: 109 GQNGQNGTDGKDGQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDG 154
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G+DG+D G+ G DG G++G DG G+DG GKDG GT+GT
Sbjct: 130 GQDGIDGQD---GQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGT 173
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 29 GRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G DG+ DG+ G+ G DG G++G DG GKDG G DG G +GT
Sbjct: 121 GQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGT 170
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G DG DG G+ G DG G++G DG G+DG G DG G G
Sbjct: 134 IDGQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDKG 181
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 27/47 (57%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G DG+DG G G DG G +G DG G DG G +G G NGT
Sbjct: 139 GQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDKGQNGT 185
>gi|332248033|ref|XP_003273165.1| PREDICTED: complement C1q and tumor necrosis factor-related
protein 9A isoform 1 [Nomascus leucogenys]
gi|441613477|ref|XP_004088143.1| PREDICTED: complement C1q and tumor necrosis factor-related
protein 9A [Nomascus leucogenys]
Length = 333
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDG---LPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G G+PG PG +G+PGR+G DG G G PG+ G PG +GT + GAD K +
Sbjct: 26 GHPGIPGNPGHNGLPGRDGRDGAKGDKGDAGEPGRPGSPGKDGTSGEKGERGADGKVEAK 85
Query: 92 GV 93
G+
Sbjct: 86 GI 87
>gi|111493926|gb|AAI10414.1| RP11-45B20.2 protein [Homo sapiens]
Length = 99
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 3 RVQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG 62
R+ +L +E+ + S G G+PG PG +G+PGR+G DG G G
Sbjct: 2 RIWWLLLAIEI--------CTGNINSQDTCRQGHPGIPGNPGHNGLPGRDGRDGAKGDKG 53
Query: 63 ---LPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
PG G PG +GT + GAD K + G+
Sbjct: 54 DAGEPGCPGSPGKDGTSGEKGERGADGKVEAKGI 87
>gi|375359795|ref|YP_005112567.1| hypothetical protein BF638R_3580 [Bacteroides fragilis 638R]
gi|301164476|emb|CBW24034.1| hypothetical protein BF638R_3580 [Bacteroides fragilis 638R]
Length = 704
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G DG DG G+ G+DG G++G DG G+DG GKDG GT+G
Sbjct: 131 GKDGQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDGKDGQDGTDG 176
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G DG+DG G+ G DG G++G DG GKDG G DG G G K
Sbjct: 149 GQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDK 193
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G +G DG G+ G DG G++G+DG G+DG GKDG GT+G
Sbjct: 122 GQNGQNGTDGKDGQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDG 167
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G+DG+D G+ G DG G++G DG G+DG GKDG GT+GT
Sbjct: 143 GQDGIDGQD---GQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGT 186
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 29 GRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G DG+ DG+ G+ G DG G++G DG GKDG G DG G +GT
Sbjct: 134 GQDGTDGKDGQDGIDGQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGT 183
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G+ G DG DG G+ G DG G++G DG G+DG G DG G G
Sbjct: 147 IDGQDGQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDKG 194
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 27/47 (57%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G DG+DG G G DG G +G DG G DG G +G G NGT
Sbjct: 152 GQDGTDGKDGQDGTDGKDGQDGTDGKDGQDGTDGTDGPEGDKGQNGT 198
>gi|341899603|gb|EGT55538.1| CBN-COL-149 protein [Caenorhabditis brenneri]
Length = 297
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 30/51 (58%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
+GR G+ G G DG PG+PG G PG+ G DG PG+ G PGKDG
Sbjct: 163 QVGRPGPDGRPGQPGRRGNDGRPGQPGPQGNPGQPGNDGRPGQPGHPGKDG 213
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 29 GRIGLDGRDGLPGEPGLD---------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GR G GR G PG PG G GR G G G DG PG G PG G+ +
Sbjct: 224 GRAGQPGRSGAPGHPGKPGEQGPHGPCGPAGRPGQQGNRGSDGHPGAPGNPGVQGSDAAY 283
Query: 80 YAMGADTKSF 89
A + + F
Sbjct: 284 CACPSRSVMF 293
>gi|410952288|ref|XP_003982813.1| PREDICTED: collagen alpha-2(I) chain isoform 1 [Felis catus]
Length = 1367
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 32/59 (54%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G ISG G G G G PG++G PG G DG PG DG PG+DG PG G +
Sbjct: 891 SVGEPGPLGISGPPGARGPSGAVGAPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGER 949
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTK 76
GR + G G G G PG PG GI G NG+DG+ G+ G P G+ G PG NGT
Sbjct: 152 GRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTP 211
Query: 77 TDHYAMG 83
A G
Sbjct: 212 GQTGARG 218
>gi|348585991|ref|XP_003478754.1| PREDICTED: collagen alpha-1(III) chain-like [Cavia porcellus]
Length = 1463
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 33/59 (55%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
R + G A S I G G DG+DG PGEPG +G+PG G G PG G G G+ G G
Sbjct: 446 RGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPPGLAGEKG 504
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G G+PG G+ G G G NG K + A G
Sbjct: 227 AGKDGESGRPGRPGERGLPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPG 282
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR + G G+ G G+PG PG+ G GRNG G G GL G++G+PG NG+
Sbjct: 237 GRPGERGLPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGS 295
Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMG 83
GR G G G PG G +G+PG NG G G G P G+ G+PG G + + A G
Sbjct: 268 FDGRNGEKGETGAPGLKGENGLPGENGSPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
Query: 84 AD 85
+D
Sbjct: 328 SD 329
>gi|326681146|ref|XP_002665520.2| PREDICTED: collagen alpha-1(XXII) chain [Danio rerio]
Length = 1623
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI----- 69
+R D G A + G +G G G GE G G G G DG PGK GLPGK+G+
Sbjct: 567 ERGDQGVAGEAGLPGPLGPKGGAGNKGEKGSTGDQGERGADGFPGKPGLPGKEGVRGLIG 626
Query: 70 -PGTNGTKTDHYAMG 83
PG NG K + A G
Sbjct: 627 APGPNGVKGEKGAQG 641
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
SG G G G PG GL G+PG G G+PG++G PGKDG G G +
Sbjct: 1264 SGEPGKQGEPGQPGRDGLRGMPGEEGKQGVPGREGQPGKDGNSGPPGPE 1312
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 6/55 (10%)
Query: 27 ISGRIGLDGRDGLPGEPGLD---GIPGRNGMDGIP---GKDGLPGKDGIPGTNGT 75
+ G+ G DGR G GEPG G PGR+G+ G+P GK G+PG++G PG +G
Sbjct: 1251 MMGKPGKDGRPGESGEPGKQGEPGQPGRDGLRGMPGEEGKQGVPGREGQPGKDGN 1305
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 31/64 (48%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G+ G DG G+PGE G G+PGR G G G G PG +G+ G G G K
Sbjct: 1274 GQPGRDGLRGMPGEEGKQGVPGREGQPGKDGNSGPPGPEGMRGPRGESGQPGEQGPTGKP 1333
Query: 89 FSDG 92
S G
Sbjct: 1334 GSQG 1337
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
+ G+ T I G GL G G+ G+PG DG PG +G G G+ G PG+DG+ G G +
Sbjct: 1230 EKGKEGMTGIQGPPGLPGLMGMMGKPGKDGRPGESGEPGKQGEPGQPGRDGLRGMPGEEG 1289
Query: 78 DHYAMGADTKSFSDG 92
G + + DG
Sbjct: 1290 KQGVPGREGQPGKDG 1304
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+ G+ GR+G PG+ G G PG GM G G+ G PG+ G G G++
Sbjct: 1288 EGKQGVPGREGQPGKDGNSGPPGPEGMRGPRGESGQPGEQGPTGKPGSQ 1336
>gi|20380522|gb|AAH28248.1| Col3a1 protein [Mus musculus]
Length = 1222
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 34/60 (56%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A S I G G DG+DG PGEPG +G+PG G G G G G +GIPG
Sbjct: 199 EPGARGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERGPSGFRGPAGPNGIPG 258
>gi|380016704|ref|XP_003692315.1| PREDICTED: collagen alpha-2(IV) chain-like [Apis florea]
Length = 918
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 29/52 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GR G G G+PG+PGL G+PG G G+PG G G G PG G K D
Sbjct: 788 QGRPGRAGTQGIPGDPGLPGLPGERGFVGLPGPQGHIGPQGPPGERGEKGDR 839
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
SG G +G+ GLPG PG DG PG G GI G+ G+PG G PG + T ++
Sbjct: 672 SGERGPEGKIGLPGMPGKDGSPGLQGPPGIRGQTGIPGVQGPPGRSITDSE 722
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 27 ISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+SG GL G GLPGE G G G+ G+ G+PGKDG PG G PG G G
Sbjct: 653 VSGPRGLPGAPGLPGERGPSGERGPEGKIGLPGMPGKDGSPGLQGPPGIRGQTGIPGVQG 712
Query: 84 ADTKSFSDGVLPSVQRAIAAGLV 106
+S +D S R I A ++
Sbjct: 713 PPGRSITD----SEIRDICASVL 731
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 28 SGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G G GRDGLPG + G+PG G GIPG+DGLPG G PG
Sbjct: 473 KGEAGEPGRDGLPGSIVGSIVPGLPGPQGSPGIPGEDGLPGIKGEPG 519
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 37 DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
GL GEPG PG G+DG GK GLPG+DG PG G K G+
Sbjct: 545 QGLSGEPG---SPGPQGIDGPIGKPGLPGRDGQPGNKGDKGQQGEQGS 589
>gi|403272954|ref|XP_003928297.1| PREDICTED: collagen alpha-2(IV) chain [Saimiri boliviensis
boliviensis]
Length = 1711
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 32/60 (53%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DR D G A G G G DG+PG PGL G G GMDG G GL G+ G PG+ G
Sbjct: 887 DRGDAGLAGERGHPGSPGFKGIDGMPGAPGLKGERGSPGMDGFQGMPGLKGRPGFPGSKG 946
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G G +G PG G G PG++G+ G PG G+PG G PG G K D + A
Sbjct: 497 LPGPKGFPGINGEPGRKGDKGDPGQHGLPGFPGLKGVPGNVGAPGPKGAKGDSRTITAKG 556
Query: 87 KSFSDGV 93
+ GV
Sbjct: 557 ERGQPGV 563
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 30 RIGL---DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
RIGL G DG PG PGL G PG G+ G+ GLPG G PG+ G
Sbjct: 1167 RIGLPGGKGDDGWPGAPGLPGFPGPRGISGL---HGLPGTKGFPGSPGA 1212
>gi|332226112|ref|XP_003262233.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-5(IV) chain
[Nomascus leucogenys]
Length = 1691
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG+ GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGEVGLPGEPGLPGQPGLPGIPGSKGE 700
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 27 ISGRIGLDGRDGLPG---------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G+ GLPG PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1286 IKGEKGNPGQPGLPGLPGLKGDHGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1342
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG G+ G G GLPG G PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKG 1116
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GLPG PG G+PG G DG PG GIPG NGTK +
Sbjct: 96 GLPGFPGTPGLPGMPGHDGAPGP------QGIPGCNGTKGER 131
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G G+PG+ G +
Sbjct: 1304 LKGDHGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPE 1353
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G PG+PGL G+PG G G PG G PG+ PG NG K D
Sbjct: 1286 IKGEKGNPGQPGLPGLPGLKGDHGPPGLQGNPGR---PGLNGMKGD 1328
>gi|326669583|ref|XP_001921630.2| PREDICTED: collagen alpha-6(IV) chain [Danio rerio]
Length = 706
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 28/60 (46%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G G G PG G G G G +G+PG G PG G PG G K D YA T
Sbjct: 38 VPGSSGFPGPKGFPGVMGFPGFSGVKGDNGVPGVPGFPGAQGPPGAKGEKGDSYASSGPT 97
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
D GLPG+PG+ G+PG +G PG G PG G PG +G K D+
Sbjct: 24 DQAKGLPGQPGIPGVPGSSG---FPGPKGFPGVMGFPGFSGVKGDN 66
>gi|156256|gb|AAB59179.1| alpha-1 type IV collagen, partial [Caenorhabditis elegans]
Length = 313
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG---KDGIPGTNG 74
G G +G PGE G G+PG NG+ G PGK G PG DG PG G
Sbjct: 1 GQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPG 46
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G G GLPG+ GL G PG+ G G PG DG PG G+ G G D GA +
Sbjct: 6 NGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLSGMPGHGGDQGFQGAAGR 65
Query: 88 SFSDGV 93
+ + G+
Sbjct: 66 TGNQGL 71
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 26/47 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G G DG PG PGL G+PG G G G G G G+PGT G
Sbjct: 30 AGYPGAPGTDGYPGPPGLSGMPGHGGDQGFQGAAGRTGNQGLPGTPG 76
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGT 75
G+PG +G PG G G+PG +GL PGK G PG GT
Sbjct: 1 GQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGT 38
>gi|17538760|ref|NP_501867.1| Protein COL-124 [Caenorhabditis elegans]
gi|9367025|emb|CAB97232.1| Protein COL-124 [Caenorhabditis elegans]
Length = 291
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 30/55 (54%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
+G G DG G GE G G PG+ G DG PG G PGKDG PG G + A+
Sbjct: 225 AGEPGKDGSPGGQGEKGASGEPGQPGRDGQPGHPGQPGKDGRPGEKGVCPKYCAL 279
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G+ G G+ G GEPG DG PG G G G+ G PG+DG PG G G D +
Sbjct: 214 GQPGQPGQRGPAGEPGKDGSPGGQGEKGASGEPGQPGRDGQPGHPGQP------GKDGRP 267
Query: 89 FSDGVLPSV 97
GV P
Sbjct: 268 GEKGVCPKY 276
>gi|428178302|gb|EKX47178.1| hypothetical protein GUITHDRAFT_152180 [Guillardia theta
CCMP2712]
Length = 97
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G G PG+ G+PGR G+ G+PG++G+ G G+PG+NG A GA
Sbjct: 25 GATGSPGVAGVPGRQGVPGVPGRNGVMGVPGVPGSNGINGSPGAAGA 71
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
Query: 17 RDIGRAISTVISGRIGLDGRDGLPGEP------GLDGIPGRNGMDGIPGKDGLPGKDGIP 70
+ +G +T G G+ GR G+PG P G+ G+PG NG++G PG G P G+P
Sbjct: 19 QGLGLVGATGSPGVAGVPGRQGVPGVPGRNGVMGVPGVPGSNGINGSPGAAGAP---GVP 75
Query: 71 GTNG-TKTDHYAM 82
G NG + +YA
Sbjct: 76 GRNGHSAGCNYAC 88
>gi|410911216|ref|XP_003969086.1| PREDICTED: collagen alpha-2(IX) chain-like [Takifugu rubripes]
Length = 691
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 30/51 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G G+DG+DG PG PGL G PG+ GM G PG G G G PG G D
Sbjct: 300 NGLPGIDGKDGTPGFPGLKGAPGQAGMPGPPGSQGAAGLPGSPGAKGGPGD 350
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---- 67
E DR D G G +G G +GLPG G DG PG G+ G PG+ G+PG
Sbjct: 275 ESGDRGDRGSRGIQGPQGAVGKKGENGLPGIDGKDGTPGFPGLKGAPGQAGMPGPPGSQG 334
Query: 68 --GIPGTNGTK 76
G+PG+ G K
Sbjct: 335 AAGLPGSPGAK 345
>gi|449279974|gb|EMC87396.1| Macrophage receptor MARCO [Columba livia]
Length = 481
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 31/53 (58%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
GL G +G GEPG G G G G+PG G+PG++G PG G K DH G+
Sbjct: 243 GLPGFNGSMGEPGHPGQKGEAGATGLPGLAGIPGQEGRPGQKGEKGDHGTSGS 295
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 26/51 (50%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
SG G G+ G G+ GL GIPG G G G G PG G PG G K D
Sbjct: 311 SGVTGPPGQKGAKGDQGLAGIPGLTGQKGSKGDYGSPGPKGNPGVKGDKGD 361
>gi|268536358|ref|XP_002633314.1| C. briggsae CBR-COL-127 protein [Caenorhabditis briggsae]
Length = 312
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 29/50 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
SG+ G G+ G G PG G PG NG G PG+DG PG+ G G GT T
Sbjct: 185 SGQPGFPGQRGNDGFPGAPGAPGDNGQPGAPGQDGFPGQPGADGQRGTGT 234
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G A T +G G G+ G PG+ G DG PG G G G+ G PG+DG PG G
Sbjct: 171 GPAGPTGPAGPAGPSGQPGFPGQRGNDGFPGAPGAPGDNGQPGAPGQDGFPGQPG 225
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 23/71 (32%)
Query: 28 SGRIGLDGRDGLPGEPGLDGI-----------------------PGRNGMDGIPGKDGLP 64
+G+ G G+DG PG+PG DG PG G DG PG+ G
Sbjct: 209 NGQPGAPGQDGFPGQPGADGQRGTGTPGAQGAPGNAGPAGPAGQPGFPGQDGAPGQAGPA 268
Query: 65 GKDGIPGTNGT 75
G+DG PG NG+
Sbjct: 269 GQDGYPGNNGS 279
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 24/47 (51%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G G G G G G PG+ G DG PG G PG +G PG G
Sbjct: 170 AGPAGPTGPAGPAGPSGQPGFPGQRGNDGFPGAPGAPGDNGQPGAPG 216
>gi|410952290|ref|XP_003982814.1| PREDICTED: collagen alpha-2(I) chain isoform 2 [Felis catus]
Length = 1372
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 32/59 (54%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G ISG G G G G PG++G PG G DG PG DG PG+DG PG G +
Sbjct: 896 SVGEPGPLGISGPPGARGPSGAVGAPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGER 954
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTK 76
GR + G G G G PG PG GI G NG+DG+ G+ G P G+ G PG NGT
Sbjct: 157 GRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTP 216
Query: 77 TDHYAMG 83
A G
Sbjct: 217 GQTGARG 223
>gi|321470032|gb|EFX81010.1| hypothetical protein DAPPUDRAFT_242949 [Daphnia pulex]
Length = 499
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 13/62 (20%)
Query: 27 ISGRIGLDGRDGLPGEP----------GLDGIPGRNGM---DGIPGKDGLPGKDGIPGTN 73
+ G G G+DG+PG P GL G PG NG DG+PG G PGKDG PG
Sbjct: 288 LPGYDGAPGKDGIPGTPSKVPGPPGPLGLSGPPGYNGAPGKDGLPGAPGYPGKDGKPGYT 347
Query: 74 GT 75
G+
Sbjct: 348 GS 349
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 24/43 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
+G G DG G PG PG DG PG G G PG G PGKDG
Sbjct: 322 YNGAPGKDGLPGAPGYPGKDGKPGYTGSTGAPGLPGKPGKDGY 364
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 22/36 (61%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
PG PG G PG NG G PGK G G+ G PG NG+
Sbjct: 157 PGYPGPKGAPGYNGAPGSPGKPGYNGEKGAPGYNGS 192
>gi|384110814|gb|AFH66974.1| ficolin, partial [Enhydris polylepis]
Length = 239
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 21 RAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPGTNG 74
R IS +I L G+ G+PG PG+ G G G++G PG GL G+ DGIPG G
Sbjct: 37 RTEHQCISDKIILQGQPGIPGIPGVPGTNGSEGLNGDPGPQGLSGEIGFDGIPGVAG 93
>gi|340730044|ref|XP_003403299.1| PREDICTED: collagen alpha-2(IV) chain-like isoform 1 [Bombus
terrestris]
Length = 894
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 29/52 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GR G G G+PG+PGL G+PG G G+PG G G G PG G K D
Sbjct: 764 QGRPGRIGTQGIPGDPGLPGLPGERGFVGLPGPQGAIGPQGSPGERGEKGDK 815
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 24 STVISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
S +SG G G GLPGE PG G G+ G+ GIPGKDG PG G PG G
Sbjct: 660 SPGVSGPRGASGAPGLPGERGPPGERGPEGQMGLPGIPGKDGAPGLQGPPGIRG 713
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 27/43 (62%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G G +G+ GLPG PG DG PG G GI G+ G+PG G PG
Sbjct: 683 GERGPEGQMGLPGIPGKDGAPGLQGPPGIRGQTGMPGVQGPPG 725
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 25/40 (62%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
G +G G G PG PG G+PG G++G GK GLPG DG
Sbjct: 544 GSLGPPGSQGSPGLPGEPGVPGPRGIEGAIGKPGLPGLDG 583
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 13 VHDRRDIGRAISTVIS-GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+ D + + T+ S G G G G PG PG G PG G +G G G+PGKDG PG
Sbjct: 645 ISDMLNTNNILETIGSPGVSGPRGASGAPGLPGERGPPGERGPEGQMGLPGIPGKDGAPG 704
Query: 72 TNG 74
G
Sbjct: 705 LQG 707
>gi|334311872|ref|XP_003339678.1| PREDICTED: collagen alpha-1(XXVII) chain-like [Monodelphis domestica]
Length = 1857
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 31/50 (62%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G GL G PG G+ GR G +G+PG+DG+PGKDG G G + D
Sbjct: 1448 GEAGSRGMQGLVGMPGPRGVVGRQGQEGLPGQDGVPGKDGRAGEQGEQGD 1497
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G+ G G G G GL G+PG G+ G G++GLPG+DG+PG +G + G D
Sbjct: 1442 GKQGKRGEAGSRGMQGLVGMPGPRGVVGRQGQEGLPGQDGVPGKDGRAGEQGEQGDD 1498
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
SG G DG G GEPG DG G G +G+ GK+G PG G+ G G +
Sbjct: 1230 SGPAGPDGLKGDKGEPGPDGERGEKGKEGLKGKEGPPGYPGVTGVRGPE 1278
>gi|224048569|ref|XP_002192944.1| PREDICTED: collagen alpha-1(IX) chain [Taeniopygia guttata]
Length = 918
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 32 GLDGRDGLPG------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+DGR+G+PG EPG G PG G+ G+PG G PG GIPG G +
Sbjct: 539 GVDGREGIPGMPGAKGEPGKPGAPGDTGLQGLPGFPGSPGMKGIPGPKGNR 589
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G++G G GEPGL G+ GR G+ G+PG G PGK G PG G +
Sbjct: 520 QGTRGINGLPGTKGEPGLPGVDGREGIPGMPGAKGEPGKPGAPGDTGLQ 568
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 27/48 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I+G G G GLPG G +GIPG G G PGK G PG G+ G G
Sbjct: 525 INGLPGTKGEPGLPGVDGREGIPGMPGAKGEPGKPGAPGDTGLQGLPG 572
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 23/40 (57%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G GLPGEPG DG G +G G PG G G+ G PG G
Sbjct: 312 GSPGLPGEPGADGFTGPDGSRGAPGPKGQKGEPGQPGARG 351
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPG---RNGMDGIPGKDGLPGKDGIPGTNG 74
G GL G G PG PG+ GIPG G G+PG G PGK G G G
Sbjct: 563 GDTGLQGLPGFPGSPGMKGIPGPKGNRGPPGVPGLMGNPGKQGQQGPEG 611
>gi|397495199|ref|XP_003818447.1| PREDICTED: collagen alpha-1(VII) chain [Pan paniscus]
Length = 2944
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 31/55 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G G GLPG GL G G+ G GIPG G PGKDG+PG G K D MG
Sbjct: 2566 GEPGDKGSAGLPGLRGLPGPQGQPGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMG 2620
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 28/61 (45%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
S G G G DG PG PG G PG G G+ G GLPG G PG G + G
Sbjct: 1291 SATAKGERGFPGADGRPGSPGRPGNPGTPGAPGLKGSPGLPGPRGDPGEQGPRGPKGEPG 1350
Query: 84 A 84
A
Sbjct: 1351 A 1351
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GLDGR GL G+P G PG +G +G GK G PG+DG+PG G +
Sbjct: 1773 GPPGLDGRSGLDGKP---GAPGPSGPNGAAGKAGDPGRDGLPGLRGEQ 1817
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GLDG G PG PGL G G G G+PG+ G PGK+G+ G G +
Sbjct: 2630 VKGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDR 2685
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 33/68 (48%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
D+G + G G G +G PG+ G G PG G G+PG GLPG G PG G
Sbjct: 2537 DMGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLPGPQGQPGAAGIPG 2596
Query: 78 DHYAMGAD 85
D + G D
Sbjct: 2597 DPGSPGKD 2604
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD--GIPGTNGTK 76
G G DG G PG PG G+PG G G PG G PG+ G+PG G K
Sbjct: 2263 GASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEK 2312
>gi|301613534|ref|XP_002936271.1| PREDICTED: hypothetical protein LOC100486732 [Xenopus (Silurana)
tropicalis]
Length = 869
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 9/59 (15%)
Query: 27 ISGRIGLDGRDGLPG---------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G +GL G++GLPG G G+PG G +G+PGK G+PG+ G+PG+ G +
Sbjct: 530 LPGSMGLPGKNGLPGLKGDIGPKGPSGAAGVPGNQGPNGLPGKPGIPGERGLPGSLGLQ 588
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ GLDG GLPG G G PG G+ G+PG G GK G+PG G
Sbjct: 449 GKPGLDGLPGLPGHIGPKGEPGIRGLPGLPGPAGY-GKPGLPGLKG 493
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 22/34 (64%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GEPGL G PG G GI G GLPG G+PG NG
Sbjct: 508 GEPGLFGEPGAQGPQGIVGPPGLPGSMGLPGKNG 541
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 25/40 (62%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G GL GEPG G G G G+PG GLPGK+G+PG G
Sbjct: 508 GEPGLFGEPGAQGPQGIVGPPGLPGSMGLPGKNGLPGLKG 547
>gi|410263264|gb|JAA19598.1| collagen, type VII, alpha 1 [Pan troglodytes]
Length = 2944
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 31/55 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G G GLPG GL G G+ G GIPG G PGKDG+PG G K D MG
Sbjct: 2566 GEPGDKGSAGLPGLRGLPGPQGQPGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMG 2620
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 28/61 (45%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
S G G G DG PG PG G PG G G+ G GLPG G PG G + G
Sbjct: 1291 SATAKGERGFPGADGRPGSPGRPGNPGTPGAPGLKGSPGLPGPRGDPGEQGPRGPKGEPG 1350
Query: 84 A 84
A
Sbjct: 1351 A 1351
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GLDGR GL G+P G PG +G +G GK G PG+DG+PG G +
Sbjct: 1773 GPPGLDGRSGLDGKP---GAPGPSGPNGAAGKAGDPGRDGLPGLRGEQ 1817
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GLDG G PG PGL G G G G+PG+ G PGK+G+ G G +
Sbjct: 2630 VKGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDR 2685
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 33/68 (48%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
D+G + G G G +G PG+ G G PG G G+PG GLPG G PG G
Sbjct: 2537 DMGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLPGPQGQPGAAGIPG 2596
Query: 78 DHYAMGAD 85
D + G D
Sbjct: 2597 DPGSPGKD 2604
>gi|363732666|ref|XP_420322.3| PREDICTED: collagen alpha-6(IV) chain [Gallus gallus]
Length = 1693
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 25 TVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
T +G GL G DG+PG +PG G G+ G G+PG+ GL G+DG+PG+ G D
Sbjct: 1378 TAPAGLPGLPGIDGVPGFDGDPGFQGPVGKPGAKGLPGRSGLKGRDGLPGSPGIAGDPGP 1437
Query: 82 MGA 84
+GA
Sbjct: 1438 VGA 1440
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIP---GRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ + + GR GL GRDGLPG PG+ G P G G G G G PG G+PG G
Sbjct: 1405 VGKPGAKGLPGRSGLKGRDGLPGSPGIAGDPGPVGAPGPQGFEGAAGKPGALGLPGMPG 1463
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 21/73 (28%)
Query: 33 LDGRDGLPGEPGLDGIPG---------------------RNGMDGIPGKDGLPGKDGIPG 71
LDGR G PGEPG G+PG R G+ GI G G PG G+PG
Sbjct: 453 LDGRTGAPGEPGQRGLPGALGPKGYKGDAGDCACDGGVTRAGIKGISGPQGPPGSRGVPG 512
Query: 72 TNGTKTDHYAMGA 84
G D +GA
Sbjct: 513 IKGVSGDPGTVGA 525
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG--------------- 62
D+G + G GLDG G PGE G G PG G DG PG G
Sbjct: 852 DVGPQGPAGMKGFPGLDGAPGPPGERGFLGPPGPFGQDGRPGFSGPKGEKGSSGLLGFPG 911
Query: 63 LPGKDGIPGTNGTKTDHYAMG 83
+PG G+PG NG K A+G
Sbjct: 912 MPGLPGVPGVNGFKGTPGAVG 932
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 29/60 (48%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GR + G G G G PG PGL G+PG NG G PG G G G+ G G K D
Sbjct: 890 GRPGFSGPKGEKGSSGLLGFPGMPGLPGVPGVNGFKGTPGAVGERGSPGVLGLQGQKGDR 949
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 21/32 (65%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
G PG GL G PG GMDG PG+ GLPG GI
Sbjct: 624 GYPGPAGLRGPPGDPGMDGFPGQAGLPGPPGI 655
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+SG +G G G+ G PGLDG PG G G G G G+DG PG +G K + + G
Sbjct: 849 LSGDVGPQGPAGMKGFPGLDGAPGPPGERGFLGPPGPFGQDGRPGFSGPKGEKGSSG 905
>gi|308500574|ref|XP_003112472.1| CRE-COL-149 protein [Caenorhabditis remanei]
gi|308267040|gb|EFP10993.1| CRE-COL-149 protein [Caenorhabditis remanei]
Length = 297
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 27 ISGRIGLDGRDGLPGEP------GLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
+ G++G G DG PG+P G G PG G G PG+DG PG+ G PG +G K H
Sbjct: 160 VCGQVGRPGPDGRPGQPGRRGNDGRPGQPGPQGNAGQPGRDGRPGQPGHPGKDGRK-GHG 218
Query: 81 AMGADTKSFSDG 92
A GA ++ G
Sbjct: 219 APGAPGRAGQPG 230
>gi|119624854|gb|EAX04449.1| collagen, type XXI, alpha 1, isoform CRA_b [Homo sapiens]
Length = 567
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 20 GRAIST---VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ +ST VISG G+ G G+ G PG+ G PG G G+PG G PG+DG G G
Sbjct: 473 GKPVSTESLVISGISGITGYQGIAGTPGVPGSPGIQGARGLPGYKGEPGRDGDKGDRG 530
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I+G G+ G G+PG PG+ G G G G PG+DG G G+PG G
Sbjct: 489 ITGYQGIAGTPGVPGSPGIQGARGLPGYKGEPGRDGDKGDRGLPGFPG 536
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G+ G GLPG EPG DG G G+ G PG G+PG G G G K
Sbjct: 501 VPGSPGIQGARGLPGYKGEPGRDGDKGDRGLPGFPGLHGMPGSKGEMGAKGDK 553
>gi|410036905|ref|XP_003950149.1| PREDICTED: collagen alpha-1(VII) chain [Pan troglodytes]
Length = 2944
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 31/55 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G G GLPG GL G G+ G GIPG G PGKDG+PG G K D MG
Sbjct: 2566 GEPGDKGSAGLPGLRGLPGPQGQPGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMG 2620
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 28/61 (45%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
S G G G DG PG PG G PG G G+ G GLPG G PG G + G
Sbjct: 1291 SATAKGERGFPGADGRPGSPGRPGNPGTPGAPGLKGSPGLPGPRGDPGEQGPRGPKGEPG 1350
Query: 84 A 84
A
Sbjct: 1351 A 1351
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
G GLDGR GL G+P G PG +G +G GK G PG+DG+PG G +
Sbjct: 1773 GPPGLDGRSGLDGKP---GAPGPSGPNGAAGKAGDPGRDGLPGLRGEQA 1818
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GLDG G PG PGL G G G G+PG+ G PGK+G+ G G +
Sbjct: 2630 VKGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDR 2685
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 33/68 (48%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
D+G + G G G +G PG+ G G PG G G+PG GLPG G PG G
Sbjct: 2537 DMGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLPGPQGQPGAAGIPG 2596
Query: 78 DHYAMGAD 85
D + G D
Sbjct: 2597 DPGSPGKD 2604
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD--GIPGTNGTK 76
G G DG G PG PG G+PG G G PG G PG+ G+PG G K
Sbjct: 2263 GASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEK 2312
>gi|301780322|ref|XP_002925578.1| PREDICTED: collagen alpha-1(XIV) chain-like [Ailuropoda melanoleuca]
Length = 1796
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
I G G+ G G GE GL G G G G PG+DG PG+ G PG +
Sbjct: 1513 IQGMPGMTGAKGEKGETGLPGPQGVPGGIGSPGRDGAPGQRGFPGKD 1559
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G G GE G G+PG G +PG G PG+DG PG G
Sbjct: 1515 GMPGMTGAKGEKGETGLPGPQG---VPGGIGSPGRDGAPGQRG 1554
Score = 37.7 bits (86), Expect = 0.91, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G PG+ G G G G+PG G+PG G PG +G
Sbjct: 1513 IQGMPGMTGAKGEKGETGLPGPQGVPGGIGSPGRDG 1548
>gi|432921052|ref|XP_004080029.1| PREDICTED: uncharacterized protein LOC101168818 [Oryzias latipes]
Length = 1760
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G PG PGL G PG+ G+ G+PG GLPG DG PGT G +
Sbjct: 1051 IKGIKGDPGPPGLAGFPGQKGIAGLPGDPGLPGTDGRPGTPGPQ 1094
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 9 QVLEVHDRRDIGRA--ISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP-- 64
Q EV + + A I GR+G G G+PG PGL G G G G PG+ G P
Sbjct: 427 QSTEVAQTQPLPSAWVIPDTEPGRVGPKGEPGIPGSPGLKGERGPQGFTGPPGEPGRPAT 486
Query: 65 GKDGIPGTNG 74
G G+PGT G
Sbjct: 487 GGRGVPGTPG 496
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMD--------GIPGKDGLPGKDGI 69
D+G + + G G+ GR GLPG+PG G PG G G+ G+ G PG+ G
Sbjct: 1120 DMGIPGPSGLKGLPGISGRPGLPGQPGAPGFPGSKGEPGSAGVGPAGMKGQKGDPGQPGF 1179
Query: 70 PGTNGTK 76
PG G+K
Sbjct: 1180 PGNPGSK 1186
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G G+ G PG PG G PG +G+ G+ G G+PG G PG G
Sbjct: 1368 GQPGFPGQKGDPGTPGFPGSPGSSGLPGLKGDSGVPGVPGFPGPKG 1413
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 28 SGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPG 65
SG GL G G P G+PG PGR G+DG PG+ GLPG
Sbjct: 796 SGLPGLPGPKGFPGIAGQPGAPAEPGRPGVDGFPGQPGLPG 836
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG---KDGLPGKDGIPGTNGTK 76
S +G GLDG G+PG G G PG G+ G PG + G G+DGIPG G K
Sbjct: 1215 SPGPTGPKGLDGEPGIPGPLGSPGRPGEPGLTGPPGLRGEKGQAGRDGIPGPPGIK 1270
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 28/57 (49%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G+ G+ G G PG PG DG PG G G G G PG G PG G K + MG
Sbjct: 1066 FPGQKGIAGLPGDPGLPGTDGRPGTPGPQGPKGDSGFPGSPGSPGFPGPKGNMGDMG 1122
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD------GIPGTNGTK 76
+ G GL G DG PG PG G G +G G PG G PG GIPG +G K
Sbjct: 1075 LPGDPGLPGTDGRPGTPGPQGPKGDSGFPGSPGSPGFPGPKGNMGDMGIPGPSGLK 1130
>gi|402855130|ref|XP_003892193.1| PREDICTED: collagen alpha-1(XXIV) chain [Papio anubis]
Length = 1733
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
SG+ G+ G GLPG G+ G G +G+ G PGK G PGK G+PG G+
Sbjct: 1294 SGKAGIPGLQGLPGPKGIQGYHGADGISGNPGKVGPPGKQGLPGIRGS 1341
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GR GL G G PG G G+PG G+ G G+ GLPG+ GI GT G +
Sbjct: 1343 GRTGLAGAPGPPGVKGSSGLPGSPGIQGPKGEQGLPGQPGIQGTRGHR 1390
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G++G G+ GLPG + G PGR G+ G PG G+ G G+PG+ G +
Sbjct: 1325 GKVGPPGKQGLPG---IRGSPGRTGLAGAPGPPGVKGSSGLPGSPGIQ 1369
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPG 71
D+G A S +G GL G G PGE GL DG+ G +G G+PG+DG G G+PG
Sbjct: 1049 DVGPAGSVGETGEPGLRGEPGAPGEEGLQGKDGLKGVSGGRGLPGEDGEKGDMGLPG 1105
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLD------------GIPGRNGMDGIPGKDGLPG 65
D+G I G G++G GL GEPG G PG G G PG++GL G
Sbjct: 1019 DVGPPGEMGIEGPPGIEGESGLQGEPGAKGDVGPAGSVGETGEPGLRGEPGAPGEEGLQG 1078
Query: 66 KDGIPGTNG 74
KDG+ G +G
Sbjct: 1079 KDGLKGVSG 1087
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G G GL GE G +G G+ G G GK G+PG G+PG G + H A G
Sbjct: 1265 GEPGDQGEQGLKGERGCEGYKGKKGAPGPSGKAGIPGLQGLPGPKGIQGYHGADG 1319
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTKTD 78
G +G G G GEPGL G PG G +G+ GKDGL G G+PG +G K D
Sbjct: 1048 GDVGPAGSVGETGEPGLRGEPGAPGEEGLQGKDGLKGVSGGRGLPGEDGEKGD 1100
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGI---PGKDGLPGKDGIPGTNGT 75
G G DG+ G PG G PG+ G+ GI PG+ GL G G PG G+
Sbjct: 1313 GYHGADGISGNPGKVGPPGKQGLPGIRGSPGRTGLAGAPGPPGVKGS 1359
>gi|449662840|ref|XP_002153851.2| PREDICTED: collagen-like protein 5-like [Hydra magnipapillata]
Length = 202
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G+DGR+G GE GL G PG G G PG GLPG G PG G
Sbjct: 83 GKPGMDGREGETGEKGLKGEPGLVGKQGKPGDHGLPGSPGKPGVKG 128
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ DIG G +G G G G+PG+DG G G G+ G+ GL GK G PG +G
Sbjct: 57 EKGDIGANGVQGDPGAMGEQGEKGNQGKPGMDGREGETGEKGLKGEPGLVGKQGKPGDHG 116
>gi|410906639|ref|XP_003966799.1| PREDICTED: collagen alpha-2(V) chain-like [Takifugu rubripes]
Length = 1445
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 9/75 (12%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGM------DGIPGKDGLPGKDGIPGTNGTKTDHYA 81
SG GL G G PG PG DG+ G+ G+ G+PG G+PG+ G PGT+G K + +
Sbjct: 663 SGPSGLLGPKGSPGAPGPDGLKGKAGLAGSVGEPGVPGLQGMPGERGTPGTSGPKGNTGS 722
Query: 82 M---GADTKSFSDGV 93
+ G + K+ +DGV
Sbjct: 723 VGEKGPEGKAGADGV 737
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G G DG PG+PG DG G G+PG GL G+ G G G++ + A GA S
Sbjct: 223 GEPGQRGPDGFPGKPGPDG---SRGFPGLPGHPGLKGQKGFAGLAGSRGESGATGAKGAS 279
Query: 89 FSDGVLPSVQRAIAAGLVIYR 109
+ GVL + AGL R
Sbjct: 280 GTSGVLGAPGPEGPAGLQGER 300
>gi|403254057|ref|XP_003919797.1| PREDICTED: complement C1q and tumor necrosis factor-related
protein 9A isoform 1 [Saimiri boliviensis boliviensis]
gi|403254059|ref|XP_003919798.1| PREDICTED: complement C1q and tumor necrosis factor-related
protein 9A isoform 2 [Saimiri boliviensis boliviensis]
gi|403254061|ref|XP_003919799.1| PREDICTED: complement C1q and tumor necrosis factor-related
protein 9A isoform 3 [Saimiri boliviensis boliviensis]
gi|403254063|ref|XP_003919800.1| PREDICTED: complement C1q and tumor necrosis factor-related
protein 9A isoform 4 [Saimiri boliviensis boliviensis]
Length = 333
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG---LPGKDGIPGTNGT 75
IG V S G G+PG PG +G+PGR+G DG G G PG G PG +GT
Sbjct: 10 IGICTGGVNSQDTCRQGHPGIPGNPGHNGLPGRDGRDGAKGDKGDAGEPGHPGSPGKDGT 69
Query: 76 KTDHYAMGADTKSFSDGV 93
+ GAD K + G+
Sbjct: 70 SGEKGERGADGKVEAKGI 87
>gi|357606659|gb|EHJ65157.1| hypothetical protein KGM_03021 [Danaus plexippus]
Length = 1912
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---------GLPG 65
D+ D G + G G G+DGLPG PG DG PG G DG+PG D GLPG
Sbjct: 1260 DKGDRGFPGLAGLKGERGPAGKDGLPGMPGRDGSPGAPGQDGLPGMDGEKGERGDRGLPG 1319
Query: 66 KDGIPGTNGTK 76
+DG+ G G +
Sbjct: 1320 RDGLDGLKGDQ 1330
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 16 RRDIGRAISTVISGRIGL------DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
R DIG S G GL G G PG PG+DG PG++G G G G PG+ GI
Sbjct: 1178 RGDIGFKGSRGPKGEPGLASEKGEKGDQGFPGLPGVDGRPGQDGEKGDKGFPGYPGQ-GI 1236
Query: 70 PGTNGTKTD 78
PG+ G K D
Sbjct: 1237 PGSQGEKGD 1245
>gi|351711761|gb|EHB14680.1| Collagen alpha-1(III) chain [Heterocephalus glaber]
Length = 1292
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 33/60 (55%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A S I G G DG+DG PGEPG +G+PG G G PG G G G+ G
Sbjct: 416 EPGARGERGEAGSPGIPGTKGEDGKDGSPGEPGANGVPGAAGERGAPGFRGPAGPPGLAG 475
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 9/68 (13%)
Query: 27 ISGRIGLDGRDGLPGE---PGL---DGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKT 77
+ G G DGR+G GE PGL +G+PG NG G G G P G+ G+PG GT+
Sbjct: 236 VKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGTRG 295
Query: 78 DHYAMGAD 85
+ A G+D
Sbjct: 296 NDGARGSD 303
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLP------GKDGIPGTNGTKTD 78
GLPG PG +G PG G G PGKDG P G G PG +G K D
Sbjct: 700 GLPGPPGSNGNPGPPGASGAPGKDGPPGPAGNSGSPGSPGVSGPKGD 746
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G G +G PG+ G G PG+NG G PG G G+ G PG GTK + G+ +
Sbjct: 388 GPAGPPGTNGAPGQRGSPGEPGKNGAKGEPGARGERGEAGSPGIPGTKGEDGKDGSPGEP 447
Query: 89 FSDGV 93
++GV
Sbjct: 448 GANGV 452
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR + G G+ G G+PG PG+ G GRNG G G GL G++G+PG NG
Sbjct: 211 GRTGERGLPGPPGIKGPAGMPGFPGVKGHRGFDGRNGEKGETGAPGLKGENGLPGENGA 269
>gi|345801731|ref|XP_537089.3| PREDICTED: collagen alpha-1(XXIV) chain [Canis lupus familiaris]
Length = 1709
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
SG+ G+ G GLPG G+ G G +G+ G GK GLPG G+PGT G+
Sbjct: 1270 SGKPGIPGLPGLPGPKGIQGYHGADGLSGNSGKAGLPGNQGVPGTRGS 1317
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTKTDHYAMGA 84
G +G G G+ GEPGL G PG G +G+ GKDGL PG G+ G +G K + GA
Sbjct: 1024 GNVGPAGNVGVAGEPGLRGEPGAPGEEGLQGKDGLKGNPGGRGLSGEDGEKGETGLPGA 1082
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 12/59 (20%)
Query: 28 SGRIGLDGRDGLPGEP------------GLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G++G GLPGEP G+ G PG G G PG++GL GKDG+ G G
Sbjct: 1005 EGPSGIEGESGLPGEPGAKGNVGPAGNVGVAGEPGLRGEPGAPGEEGLQGKDGLKGNPG 1063
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GL G GLPG EPG+ G G G G PG+ GL G +G PG G +
Sbjct: 560 MQGDKGLKGYPGLPGPRGEPGIPGFTGNIGSRGYPGRQGLAGPEGNPGPKGVR 612
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 28 SGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
SG+ GL G G+PG PG G+ G G G G GLPG G+PG G +
Sbjct: 1300 SGKAGLPGNQGVPGTRGSPGRTGLTGSPGPRGAKGSSGLPGSPGVPGPKGEQ 1351
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 32/65 (49%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G G GL GE G +G G+ G G GK G+PG G+PG G + H A G S
Sbjct: 1241 GEPGDQGEQGLKGERGSEGPKGKKGAPGPSGKPGIPGLPGLPGPKGIQGYHGADGLSGNS 1300
Query: 89 FSDGV 93
G+
Sbjct: 1301 GKAGL 1305
>gi|321469866|gb|EFX80844.1| hypothetical protein DAPPUDRAFT_317966 [Daphnia pulex]
Length = 514
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 17/76 (22%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPG----------------RNGMDGIPGKDGLPGKDG 68
T +G G G +G PG PG DG PG G +G PGKDGLPG G
Sbjct: 264 TGPAGPKGEPGNNGAPGAPGKDGYPGAPSTIAGPPGPVGPAGSAGYNGAPGKDGLPGAPG 323
Query: 69 IPGTNGTK-TDHYAMG 83
+PG +G YA+G
Sbjct: 324 VPGKDGKPGAPSYAVG 339
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 28 SGRIGLDGRDGLPGEPGL---DGIPGRNGMD-GIPGKDGLPGKDGI 69
+G G G+DGLPG PG+ DG PG G PG+ G PGKDG+
Sbjct: 307 AGYNGAPGKDGLPGAPGVPGKDGKPGAPSYAVGPPGEQGRPGKDGL 352
>gi|297274819|ref|XP_002800878.1| PREDICTED: collagen alpha-2(IV) chain-like [Macaca mulatta]
Length = 1499
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 32/60 (53%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DR D G A G G G DG+PG PGL G G GMDG G GL G+ G PG+ G
Sbjct: 675 DRGDAGLAGERGHPGSPGFKGIDGMPGTPGLKGERGSPGMDGFQGMPGLKGRPGFPGSKG 734
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 29/47 (61%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GRIGL G G G PG+ G+PG G+ GI G GLPG G PG+ G
Sbjct: 954 GRIGLPGGKGDDGWPGIPGLPGFPGLRGIRGLHGLPGTKGFPGSPGA 1000
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G G +G PG G G PG++G+ G PG G+PG G PG G K D
Sbjct: 292 LPGPKGFAGINGEPGRKGDKGDPGQHGLPGFPGLKGVPGNVGAPGPKGAKGD 343
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 25 TVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
T + G GL G+ G PG PG G PGR G+ G G DG PG G+PG G +
Sbjct: 926 TGVQGPPGLKGQTGFPGLTGPPGSQGEPGRIGLPGGKGDDGWPGIPGLPGFPGLR 980
>gi|426257733|ref|XP_004022477.1| PREDICTED: collagen alpha-5(IV) chain isoform 1 [Ovis aries]
Length = 1691
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG+ GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGHPGRDGEVGLPGEPGLPGQPGLPGIPGSKGE 700
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ GL G G G PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1297 GQPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1342
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
ISG IGL G G GEPGL G PG G G G+ GLPG G PG G
Sbjct: 1070 ISG-IGLPGLPGPKGEPGLPGYPGNPGTKGSMGETGLPGLPGTPGAKG 1116
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G G+PG+ G +
Sbjct: 1304 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSTGPE 1353
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPG----------------RNGMDGIP 58
+ + G A +T G G+ G G PG PG G PG G+ G+P
Sbjct: 513 QKGEKGHAGATGPKGLTGIPGAPGAPGFPGPKGEPGDILTFPGMKGDKGDLGSPGVPGLP 572
Query: 59 GKDGLPGKDGIPGTNGTKTDHYAM 82
G G PG+DG+PG G K + M
Sbjct: 573 GLPGTPGQDGLPGLPGPKGEPGGM 596
>gi|75677420|ref|NP_031762.2| collagen, type IV, alpha 5 precursor [Mus musculus]
gi|253683445|ref|NP_001156627.1| collagen, type IV, alpha 5 precursor [Mus musculus]
gi|52350622|gb|AAH82788.1| Col4a5 protein [Mus musculus]
gi|74221714|dbj|BAE21544.1| unnamed protein product [Mus musculus]
Length = 1691
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGSPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 26/44 (59%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG G+ G G+ GLPG G PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGETGLPGLPGNPGAKG 1116
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+ G G G G PG PGL G+PG G DG+P GLPG G PG
Sbjct: 552 TLPGMKGDKGELGFPGAPGLPGLPGSPGKDGLP---GLPGPKGEPG 594
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G G G G PG PG+ G G G+ G+PG G G+ G+PG GT
Sbjct: 1078 LPGPKGEPGLPGYPGNPGIKGSVGETGLPGLPGNPGAKGQPGLPGFPGT 1126
>gi|395745549|ref|XP_003780511.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(IV) chain [Pongo
abelii]
Length = 1363
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G +G G GLPGE PGLDGIPG G G+PG + G PG DGIPG+
Sbjct: 825 GSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 884
Query: 74 GTKTD 78
G K +
Sbjct: 885 GEKGE 889
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G K DH
Sbjct: 576 TGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDH 630
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 36/84 (42%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G G G PG G+PG G G+PG DG+PG G G GT G
Sbjct: 814 MPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKG 873
Query: 87 KSFSDGVLPSVQRAIAAGLVIYRF 110
+ SDG+ S G F
Sbjct: 874 EPGSDGIPGSAGEKGEPGCSAAAF 897
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG------KDGLPG 65
E D+ +G S G G G G+PG PGL G PG G G PG GLPG
Sbjct: 787 EKGDQGLVGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPG 846
Query: 66 KDGIPGTNG 74
DGIPG G
Sbjct: 847 LDGIPGVKG 855
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G GIPG G+K +
Sbjct: 546 IKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGV 605
Query: 82 MGADTKSFSDGVL 94
MG + S G +
Sbjct: 606 MGTPGQPGSPGPV 618
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G+ G+PG G PG G PG G + Y
Sbjct: 211 GFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEIY 256
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG------IPGT 72
IG S G G+ G+DG G+PG G G G+ G PG GLPG G +PGT
Sbjct: 684 IGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGT 743
Query: 73 NGTK 76
G K
Sbjct: 744 PGEK 747
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 26/46 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+GL G GLPG PG+ G PG G G+PG G G G PG G +
Sbjct: 458 VGLPGLKGLPGLPGIPGTPGEKGSIGVPGVPGEHGAIGPPGLQGIR 503
>gi|355701099|gb|EHH29120.1| hypothetical protein EGK_09458 [Macaca mulatta]
Length = 1712
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 32/60 (53%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DR D G A G G G DG+PG PGL G G GMDG G GL G+ G PG+ G
Sbjct: 888 DRGDAGLAGERGHPGSPGFKGIDGMPGTPGLKGERGSPGMDGFQGMPGLKGRPGFPGSKG 947
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDG------LPG 65
DR G S + G GL G+ GLPG +PGL G PG++G G PG++G +PG
Sbjct: 801 DRGPPGFRGSQGMPGMPGLKGQPGLPGASGQPGLSGPPGQHGFPGAPGQEGPLGLPGIPG 860
Query: 66 KDGIPGTNGTKTDHYAMG 83
+G+PG G D A G
Sbjct: 861 LEGLPGDRGDPGDIGAPG 878
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 29/47 (61%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GRIGL G G G PG+ G+PG G+ GI G GLPG G PG+ G
Sbjct: 1167 GRIGLPGGKGDDGWPGIAGLPGFPGLRGIRGLHGLPGTKGFPGSPGA 1213
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G G G +G PG G G PG++G+ G PG G+PG G PG G K D
Sbjct: 498 LPGPKGFAGINGEPGRKGDKGDPGQHGLPGFPGLKGVPGNVGAPGPKGAKGDS 550
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPG---------RNGMDGIPG---KDGLPGKDGIPGTN 73
V+ + G G G+PG+PG G+PG GM G+PG + GLPG G PG +
Sbjct: 776 VLGAQPGPRGDAGVPGQPGFKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGASGQPGLS 835
Query: 74 GTKTDHYAMGA 84
G H GA
Sbjct: 836 GPPGQHGFPGA 846
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 25 TVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
T + G GL G+ G PG PG G PGR G+ G G DG PG G+PG G +
Sbjct: 1139 TGVQGPPGLKGQTGFPGLTGPPGSQGEPGRIGLPGGKGDDGWPGIAGLPGFPGLR 1193
>gi|189237743|ref|XP_971465.2| PREDICTED: similar to AGAP011620-PA [Tribolium castaneum]
Length = 1547
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKDGIPGTNGTKTDHYAMG 83
SGR G G GLPG PG DG PG G G P G G PG G+PG NG+ A G
Sbjct: 456 SGRPGQPGETGLPGIPGKDGSPGEKGNPGAPGISGPPGFPGVRGLPGVNGSPGQPGAKG 514
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 34/61 (55%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
R + GR +G G+ G+DG PGE G G PG +G G PG GLPG +G PG G
Sbjct: 453 RGESGRPGQPGETGLPGIPGKDGSPGEKGNPGAPGISGPPGFPGVRGLPGVNGSPGQPGA 512
Query: 76 K 76
K
Sbjct: 513 K 513
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G G GE G G PG G+ GIPGKDG PG+ G PG G
Sbjct: 442 GPKGSQGLQGPRGESGRPGQPGETGLPGIPGKDGSPGEKGNPGAPG 487
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 25/43 (58%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G PG+PG G+PG G DG PG+ G PG GI G G
Sbjct: 451 GPRGESGRPGQPGETGLPGIPGKDGSPGEKGNPGAPGISGPPG 493
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+R +G+ + G +G G DG+ G PGL PG G G PG GLPG G PG G
Sbjct: 767 ERGPVGQPGIPGLKGNVGSPGPDGVQGPPGL---PGAKGHSGAPGLVGLPGLRGQPGPQG 823
Query: 75 TKTDHYAM 82
K + ++
Sbjct: 824 EKGERGSI 831
>gi|387542762|gb|AFJ72008.1| collagen alpha-2(IV) chain preproprotein [Macaca mulatta]
Length = 1712
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 32/60 (53%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DR D G A G G G DG+PG PGL G G GMDG G GL G+ G PG+ G
Sbjct: 888 DRGDAGLAGERGHPGSPGFKGIDGMPGTPGLKGERGSPGMDGFQGMPGLKGRPGFPGSKG 947
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDG------LPG 65
DR G S + G GL G+ GLPG +PGL G PG++G G PG++G +PG
Sbjct: 801 DRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLSGPPGQHGFPGAPGQEGPLGLPGIPG 860
Query: 66 KDGIPGTNGTKTDHYAMG 83
+G+PG G D A G
Sbjct: 861 LEGLPGDRGDPGDIGAPG 878
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 29/47 (61%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GRIGL G G G PG+ G+PG G+ GI G GLPG G PG+ G
Sbjct: 1167 GRIGLPGGKGDDGWPGIAGLPGFPGLRGIRGLHGLPGTKGFPGSPGA 1213
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G G G +G PG G G PG++G+ G PG G+PG G PG G K D
Sbjct: 498 LPGPKGFAGINGEPGRKGDKGDPGQHGLPGFPGLKGVPGNVGAPGPKGAKGDS 550
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPG---------RNGMDGIPG---KDGLPGKDGIPGTN 73
V+ + G G G+PG+PG G+PG GM G+PG + GLPG G PG +
Sbjct: 776 VLGAQPGPRGDAGVPGQPGFKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLS 835
Query: 74 GTKTDHYAMGA 84
G H GA
Sbjct: 836 GPPGQHGFPGA 846
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 25 TVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
T + G GL G+ G PG PG G PGR G+ G G DG PG G+PG G +
Sbjct: 1139 TGVQGPPGLKGQTGFPGLTGPPGSQGEPGRIGLPGGKGDDGWPGIAGLPGFPGLR 1193
>gi|148689164|gb|EDL21111.1| RIKEN cDNA E330026B02 [Mus musculus]
Length = 1482
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 22/40 (55%)
Query: 37 DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
DGL GE G GIPGR G G G G PG+ G G G K
Sbjct: 1431 DGLDGEQGDHGIPGRRGEKGDEGSQGSPGRRGAAGDRGAK 1470
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 23/51 (45%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
GLDG G G PG G G G G PG+ G G G G G +A+
Sbjct: 1432 GLDGEQGDHGIPGRRGEKGDEGSQGSPGRRGAAGDRGAKGLRGDPVSAWAL 1482
>gi|358333154|dbj|GAA34952.2| collagen type I/II/III/V/XI alpha [Clonorchis sinensis]
Length = 1323
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 35/65 (53%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E + D G + + G GLDG G PG+ G DG PGR G+ G G G PGKDG PG
Sbjct: 384 ERGPKGDTGMVGAPGMPGNPGLDGLPGKPGDQGKDGEPGRPGLRGPTGLPGAPGKDGEPG 443
Query: 72 TNGTK 76
G +
Sbjct: 444 PQGYQ 448
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGR---NGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G+ G G+PG PGLDG+PG+ G DG PG+ GL G G+PG G + G
Sbjct: 389 GDTGMVGAPGMPGNPGLDGLPGKPGDQGKDGEPGRPGLRGPTGLPGAPGKDGEPGPQGYQ 448
Query: 86 TKSFSDGV 93
+ DG
Sbjct: 449 GQKGMDGA 456
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G+ G G+DG PG PGL G+PG G DG PG G G+ G+ G +G
Sbjct: 408 LPGKPGDQGKDGEPGRPGLRGPTGLPGAPGKDGEPGPQGYQGQKGMDGASG 458
>gi|355759734|gb|EHH61676.1| hypothetical protein EGM_19712, partial [Macaca fascicularis]
Length = 2912
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 29/61 (47%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
S + G G G DG PG PG G PG G G+ G GLPG G PG G + G
Sbjct: 1263 SAIAKGEKGFPGADGRPGSPGRPGTPGTPGAPGLKGSPGLPGPRGEPGEQGPRGPKGEPG 1322
Query: 84 A 84
A
Sbjct: 1323 A 1323
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GLDGR GL G+PG G PG NG GK G PG+DG+PG G +
Sbjct: 1745 GPPGLDGRSGLDGKPGASGPPGLNGAA---GKAGDPGRDGLPGLRGEQ 1789
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G G G G PGL G+PG G G IPG G PGKDG+PG G K D MG
Sbjct: 2535 GSKGEPGDKGSAGSPGLRGLPGPQGQPGAAGIPGDPGSPGKDGVPGIRGGKGDVGFMG 2592
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GLDG G PG PGL G G G G+PG+ G PGK+G+ G G +
Sbjct: 2602 VKGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDR 2657
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKDGIPG 71
G+ GL+G++G PG+PG DG G G G P G+DG G+ G+PG
Sbjct: 1808 GKPGLNGKNGEPGDPGEDGRKGEKGDSGAPGREGRDGPKGERGVPG 1853
>gi|355754806|gb|EHH58707.1| hypothetical protein EGM_08620 [Macaca fascicularis]
Length = 1712
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 32/60 (53%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DR D G A G G G DG+PG PGL G G GMDG G GL G+ G PG+ G
Sbjct: 888 DRGDAGLAGERGHPGSPGFKGIDGMPGTPGLKGERGSPGMDGFQGMPGLKGRPGFPGSKG 947
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDG------LPG 65
DR G S + G GL G+ GLPG +PGL G PG++G G PG++G +PG
Sbjct: 801 DRGPPGFRGSQGMPGMPGLKGQPGLPGASGQPGLSGPPGQHGFPGAPGQEGPLGLPGIPG 860
Query: 66 KDGIPGTNGTKTDHYAMG 83
+G+PG G D A G
Sbjct: 861 LEGLPGDRGDPGDIGAPG 878
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 29/47 (61%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GRIGL G G G PG+ G+PG G+ GI G GLPG G PG+ G
Sbjct: 1167 GRIGLPGGKGDDGWPGIAGLPGFPGLRGIRGLHGLPGTKGFPGSPGA 1213
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G G G +G PG G G PG++G+ G PG G+PG G PG G K D
Sbjct: 498 LPGPKGFAGINGEPGRKGDKGDPGQHGLPGFPGLKGVPGNVGAPGPKGAKGDS 550
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPG---------RNGMDGIPG---KDGLPGKDGIPGTN 73
V+ + G G G+PG+PG G+PG GM G+PG + GLPG G PG +
Sbjct: 776 VLGAQPGPRGDAGVPGQPGFKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGASGQPGLS 835
Query: 74 GTKTDHYAMGA 84
G H GA
Sbjct: 836 GPPGQHGFPGA 846
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 25 TVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
T + G GL G+ G PG PG G PGR G+ G G DG PG G+PG G +
Sbjct: 1139 TGVQGPPGLKGQTGFPGLTGPPGSQGEPGRIGLPGGKGDDGWPGIAGLPGFPGLR 1193
>gi|345788851|ref|XP_003433143.1| PREDICTED: collagen alpha-1(IV) chain [Canis lupus familiaris]
Length = 1617
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 34/65 (52%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ G T SG GL G+ G PG PG G G G+ G PG+ G PG G+PG G
Sbjct: 792 DKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGPKGEMGVMGTPGQPGSPGPAGLPGLPG 851
Query: 75 TKTDH 79
K DH
Sbjct: 852 EKGDH 856
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G +G G GLPGE G G+PG +G+ GI G+ GLPG+ G G G K +
Sbjct: 1049 LPGTVGYPGSPGLPGEKGDKGLPGSDGIPGIKGEAGLPGQPGPTGPAGQKGE 1100
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G S + G G G GLPG PG G+PG G G+PG DG+PG G G G
Sbjct: 1028 EKGEKGSAGVPGIPGSPGPKGLPGTVGYPGSPGLPGEKGDKGLPGSDGIPGIKGEAGLPG 1087
Query: 75 TKTDHYAMGADTKSFSDGVLPSVQRAIAAGLVIYRF 110
G + SDG+ SV GL F
Sbjct: 1088 QPGPTGPAGQKGEPGSDGIPGSVGEKGEPGLPGRGF 1123
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G++G+PG G+PG G PG G + Y
Sbjct: 437 GFPGQPGAKGDRGLPGRDGLEGLPGPQGVPGLMGQPGAKGEPGEIY 482
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 27/50 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
ISG G G G G G+ GIPG G G+PG G PG G+PG G K
Sbjct: 1019 ISGFPGSPGEKGEKGSAGVPGIPGSPGPKGLPGTVGYPGSPGLPGEKGDK 1068
>gi|384939862|gb|AFI33536.1| collagen alpha-2(IV) chain preproprotein [Macaca mulatta]
Length = 1712
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 32/60 (53%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DR D G A G G G DG+PG PGL G G GMDG G GL G+ G PG+ G
Sbjct: 888 DRGDAGLAGERGHPGSPGFKGIDGMPGTPGLKGERGSPGMDGFQGMPGLKGRPGFPGSKG 947
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDG------LPG 65
DR G S + G GL G+ GLPG +PGL G PG++G G PG++G +PG
Sbjct: 801 DRGPPGFRGSQGMPGMPGLKGQPGLPGASGQPGLSGPPGQHGFPGAPGQEGPLGLPGIPG 860
Query: 66 KDGIPGTNGTKTDHYAMG 83
+G+PG G D A G
Sbjct: 861 LEGLPGDRGDPGDIGAPG 878
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 29/47 (61%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GRIGL G G G PG+ G+PG G+ GI G GLPG G PG+ G
Sbjct: 1167 GRIGLPGGKGDDGWPGIPGLPGFPGLRGIRGLHGLPGTKGFPGSPGA 1213
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G G G +G PG G G PG++G+ G PG G+PG G PG G K D
Sbjct: 498 LPGPKGFAGINGEPGRKGDKGDPGQHGLPGFPGLKGVPGNVGAPGPKGAKGDS 550
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPG---------RNGMDGIPG---KDGLPGKDGIPGTN 73
V+ + G G G+PG+PG G+PG GM G+PG + GLPG G PG +
Sbjct: 776 VLGAQPGPRGDAGVPGQPGFKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGASGQPGLS 835
Query: 74 GTKTDHYAMGA 84
G H GA
Sbjct: 836 GPPGQHGFPGA 846
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 25 TVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
T + G GL G+ G PG PG G PGR G+ G G DG PG G+PG G +
Sbjct: 1139 TGVQGPPGLKGQTGFPGLTGPPGSQGEPGRIGLPGGKGDDGWPGIPGLPGFPGLR 1193
>gi|326921773|ref|XP_003207130.1| PREDICTED: collagen alpha-2(I) chain-like [Meleagris gallopavo]
Length = 1330
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 29/50 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+SG G G G G PG +G PG G DG PG DG PG+DG PG G +
Sbjct: 865 VSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDGPPGRDGAPGFKGER 914
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTK 76
GR ++G G G G PG PG GI G NG+DG G+ G P G+ G PG NGT
Sbjct: 208 GRPGERGVAGPQGARGFPGTPGLPGFKGIRGHNGLDGQKGQPGTPGTKGEPGAPGENGTP 267
Query: 77 TDHYAMG 83
A G
Sbjct: 268 GQPGARG 274
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G GLDG+ G PG PG G PG G +G PG+ PG G+PG G
Sbjct: 236 IRGHNGLDGQKGQPGTPGTKGEPGAPGENGTPGQ---PGARGLPGERG 280
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
SG +G G +G PGE G DG PG DG PG+DG PG G G G A+GA
Sbjct: 875 SGPVGSPGPNGAPGEAGRDGNPGN---DGPPGRDGAPGFKGERGAPGNPGPSGAVGA 928
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI------------PGTNGTKTDHYA 81
DG G PG PG G+ G G G PG GLPG GI PGT GTK + A
Sbjct: 201 DGHPGKPGRPGERGVAGPQGARGFPGTPGLPGFKGIRGHNGLDGQKGQPGTPGTKGEPGA 260
Query: 82 MGAD 85
G +
Sbjct: 261 PGEN 264
>gi|268537148|ref|XP_002633710.1| C. briggsae CBR-COL-124 protein [Caenorhabditis briggsae]
Length = 291
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 29/55 (52%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
SG G DG G PGE G G PG G DG PG G PGKDG G G + A+
Sbjct: 225 SGEPGKDGTPGGPGEKGASGEPGAPGRDGQPGHPGQPGKDGRQGEKGVCPKYCAL 279
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G+ G G G GEPG DG PG G G G+ G PG+DG PG G G D +
Sbjct: 214 GQPGQPGPRGPSGEPGKDGTPGGPGEKGASGEPGAPGRDGQPGHPGQP------GKDGRQ 267
Query: 89 FSDGVLP 95
GV P
Sbjct: 268 GEKGVCP 274
>gi|334330305|ref|XP_003341334.1| PREDICTED: collagen alpha-1(III) chain isoform 2 [Monodelphis
domestica]
Length = 1459
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 33/63 (52%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A G G DG++G PGEPG +GIPG G G PG G G GIPG
Sbjct: 439 EPGPRGERGEAGIPGQPGAKGEDGKNGNPGEPGANGIPGSPGERGAPGFRGAAGSPGIPG 498
Query: 72 TNG 74
G
Sbjct: 499 EKG 501
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 27/44 (61%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIP 70
SG+ G G G G PGL G+PG G DG PG DG PG+DG P
Sbjct: 982 TSGQNGERGPQGPQGLPGLSGMPGEPGRDGNPGSDGQPGRDGAP 1025
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G G++G G G G+PG +GM G PG+DG PG DG PG +G
Sbjct: 978 GKPGTSGQNGERGPQGPQGLPGLSGMPGEPGRDGNPGSDGQPGRDGA 1024
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLD---GIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR + G G+ G G+PG PG+ G GRNG G G GL G++G+PG NG+
Sbjct: 234 GRPGERGLPGAQGIKGPSGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGDNGS 292
>gi|313230188|emb|CBY07892.1| unnamed protein product [Oikopleura dioica]
Length = 630
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G +GRDGLPG+ G PGR G G PGK G PG+ GI GT G
Sbjct: 282 GQTGHEGRDGLPGQVGF---PGRQGDRGKPGKHGAPGQPGIQGTPG 324
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 31/59 (52%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
D G IS +GL G DG PG G G GR G G G+DGLPG+ G PG G +
Sbjct: 247 DTGFPISFHEESILGLPGFDGSPGINGKPGRQGRPGQTGHEGRDGLPGQVGFPGRQGDR 305
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I+G+ G GR G G G DG+PG+ G G G G PGK G PG G +
Sbjct: 271 INGKPGRQGRPGQTGHEGRDGLPGQVGFPGRQGDRGKPGKHGAPGQPGIQ 320
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNGTKTDHYAMG 83
+G G +GR GL G PG G G +G G+PGK GLPG G PG NG + A G
Sbjct: 507 AGYPGKEGRAGLTGSPGAPGHCGDDGEKGLPGKCGPQGLPGIKGRPGRNGDNGEIGAQG 565
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 26/47 (55%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK 66
GR T GR GL G+ G PG G G PG++G G PG G PGK
Sbjct: 279 GRPGQTGHEGRDGLPGQVGFPGRQGDRGKPGKHGAPGQPGIQGTPGK 325
>gi|270007894|gb|EFA04342.1| hypothetical protein TcasGA2_TC014637 [Tribolium castaneum]
Length = 1545
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKDGIPGTNGTKTDHYAMG 83
SGR G G GLPG PG DG PG G G P G G PG G+PG NG+ A G
Sbjct: 456 SGRPGQPGETGLPGIPGKDGSPGEKGNPGAPGISGPPGFPGVRGLPGVNGSPGQPGAKG 514
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 34/61 (55%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
R + GR +G G+ G+DG PGE G G PG +G G PG GLPG +G PG G
Sbjct: 453 RGESGRPGQPGETGLPGIPGKDGSPGEKGNPGAPGISGPPGFPGVRGLPGVNGSPGQPGA 512
Query: 76 K 76
K
Sbjct: 513 K 513
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G G GE G G PG G+ GIPGKDG PG+ G PG G
Sbjct: 442 GPKGSQGLQGPRGESGRPGQPGETGLPGIPGKDGSPGEKGNPGAPG 487
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 25/43 (58%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G PG+PG G+PG G DG PG+ G PG GI G G
Sbjct: 451 GPRGESGRPGQPGETGLPGIPGKDGSPGEKGNPGAPGISGPPG 493
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+R +G+ + G +G G DG+ G PGL PG G G PG GLPG G PG G
Sbjct: 767 ERGPVGQPGIPGLKGNVGSPGPDGVQGPPGL---PGAKGHSGAPGLVGLPGLRGQPGPQG 823
Query: 75 TKTDHYAM 82
K + ++
Sbjct: 824 EKGERGSI 831
>gi|62088872|dbj|BAD92883.1| COL4A1 protein variant [Homo sapiens]
Length = 847
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G +G G GLPGE PGLDGIPG G G+PG + G PG DGIPG+
Sbjct: 281 GSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 340
Query: 74 GTKTD 78
G K +
Sbjct: 341 GEKGE 345
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 3 RVQGMLQVLEVHDRRDIGRAIS-------TVISGRIGLDGRDGLPGEPGLDGIPGRNGMD 55
R+ G + R RA T SG GL G+ G PG PG G G G+
Sbjct: 3 RISGASRATGTPGRNRFPRAARGQGLPGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGVM 62
Query: 56 GIPGKDGLPGKDGIPGTNGTKTDH 79
G PG+ G PG G PG G K DH
Sbjct: 63 GTPGQPGSPGPVGAPGLPGEKGDH 86
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 36/79 (45%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G G G PG G+PG G G+PG DG+PG G G GT G
Sbjct: 270 MPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKG 329
Query: 87 KSFSDGVLPSVQRAIAAGL 105
+ SDG+ S GL
Sbjct: 330 EPGSDGIPGSAGEKGEPGL 348
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 25/43 (58%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G GL G PG G PG G+ G G GLPG DGIPG G
Sbjct: 269 GMPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKG 311
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG------IPGT 72
IG S G G+ G+DG G+PG G G G+ G PG GLPG G +PGT
Sbjct: 140 IGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGT 199
Query: 73 NGTK 76
G K
Sbjct: 200 PGEK 203
>gi|426353601|ref|XP_004044278.1| PREDICTED: collagen alpha-1(XXI) chain-like [Gorilla gorilla
gorilla]
Length = 957
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + I G+ GL G G PG PG G PG+ G DG PG G+ G G+PG+ G
Sbjct: 436 DVGSTPAPCICPPGKPGLQGPKGDPGLPGNPGYPGQPGQDGKPGYQGIAGTPGVPGSPGI 495
Query: 76 K 76
+
Sbjct: 496 Q 496
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIP---------GKDGLPGKDGIPGTNGTKTDH 79
GL G G PG+PG DG PG G+ G P G GLPG G PG +G K D
Sbjct: 461 GLPGNPGYPGQPGQDGKPGYQGIAGTPGVPGSPGIQGARGLPGYKGEPGRDGDKGDR 517
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP------GKDGLPGKDGIPGTNGTKTDHYA 81
G IG G+ G G PG+ G+ G NG G P G G PG G+PG +G K + A
Sbjct: 619 KGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSKGEPGIQGMPGASGLKGETGA 678
Query: 82 MGA 84
MG+
Sbjct: 679 MGS 681
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPG---------RNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
SG G G G PGEPG G+PG G GI G+ G G+ GIPG G +
Sbjct: 670 SGLKGETGAMGSPGEPGYMGLPGIQGKKGDKGNQGEKGIQGQKGENGRQGIPGQQGIQGH 729
Query: 79 HYAMGADTKSFSDGV 93
H A G + GV
Sbjct: 730 HGAKGERGEKGEPGV 744
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
LPG PG DG+PG + G+PG+ G+ G G+PG NG K
Sbjct: 844 LPGLPGRDGVPG---LVGVPGRPGVRGLKGLPGRNGEK 878
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G+ G PG G+ G+PG++G G G
Sbjct: 846 GLPGRDGVPGLVGVPGRPGVRGLKGLPGRNGEKGSQGF 883
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G+ G G PG G G GM G+ G +G PG+ G PG+ G+K
Sbjct: 609 FPGNRGLMGQKGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSK 658
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG---IPGTNGTKTDH 79
G+ G G G GEPG+ G+PG +G+ G G G PG+ G +PG G K D
Sbjct: 647 GQPGTPGSKGSKGEPGIQGMPGASGLKGETGAMGSPGEPGYMGLPGIQGKKGDK 700
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G+ G GLPG EPG DG G G+ G PG G+PG G G G K
Sbjct: 489 VPGSPGIQGARGLPGYKGEPGRDGDKGDRGLPGFPGLHGMPGSKGEMGAKGDK 541
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---------GIPGTNGTKTDH 79
G+ G G G+ G PG+ G PG G G+PG G PG+D G PG +G
Sbjct: 473 GQDGKPGYQGIAGTPGVPGSPGIQGARGLPGYKGEPGRDGDKGDRGLPGFPGLHGMPGSK 532
Query: 80 YAMGA 84
MGA
Sbjct: 533 GEMGA 537
Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G G+DG GEPG+ G PG G+ G G+ G PG+ G G G
Sbjct: 589 AGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKGEIGPPGQQGKKGAPG 635
>gi|28422746|gb|AAH46970.1| Col9a1 protein [Mus musculus]
Length = 629
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 33/60 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G+DGRDG+PG PG G G+ G G G GLPG GIPG G + GA K
Sbjct: 537 TGLPGVDGRDGIPGMPGTKGEAGKPGPPGDVGLQGLPGVPGIPGAKGVAGEKGNTGAPGK 596
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 30/62 (48%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G +GL G G+PG PG G+ G G G PGK G G G PG G + +D
Sbjct: 565 GDVGLQGLPGVPGIPGAKGVAGEKGNTGAPGKPGQLGSSGKPGQQGPPWREWFPWSDGNP 624
Query: 89 FS 90
+S
Sbjct: 625 WS 626
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G+ G G GL G PG+ GIPG G+ G G G PGK G G++G +
Sbjct: 558 AGKPGPPGDVGLQGLPGVPGIPGAKGVAGEKGNTGAPGKPGQLGSSGKPGQQGPPWREWF 617
Query: 88 SFSDG 92
+SDG
Sbjct: 618 PWSDG 622
>gi|443691693|gb|ELT93475.1| hypothetical protein CAPTEDRAFT_198019 [Capitella teleta]
Length = 340
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
T +G GLDGRDG G G G GR+G+DG G G G++G G+ G + A G
Sbjct: 73 TGATGERGLDGRDGATGRAGQTGATGRDGVDGRTGATGSSGRNGETGSTGATGEVGATGQ 132
Query: 85 DTKSFSDG 92
D +S + G
Sbjct: 133 DGRSGATG 140
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 27/43 (62%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG 62
GR +T +GR G+DGR G GE GLDG GR G G G+DG
Sbjct: 275 GRTGATGATGRNGIDGRTGATGERGLDGSTGRTGATGNDGRDG 317
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR T +GR G+DGR G G GLDG G G G G+ G G+DG G G +
Sbjct: 4 TGRDGRTGATGRDGVDGRTGATGSSGLDGRTGATGSSGRDGQTGASGRDGQTGATGMNGN 63
Query: 79 HYAMGADTKSFSDG 92
A G + ++ + G
Sbjct: 64 TGATGQNGQTGATG 77
>gi|426257735|ref|XP_004022478.1| PREDICTED: collagen alpha-5(IV) chain isoform 2 [Ovis aries]
Length = 1685
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG+ GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGHPGRDGEVGLPGEPGLPGQPGLPGIPGSKGE 700
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ GL G G G PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1291 GQPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1336
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
ISG IGL G G GEPGL G PG G G G+ GLPG G PG G
Sbjct: 1070 ISG-IGLPGLPGPKGEPGLPGYPGNPGTKGSMGETGLPGLPGTPGAKG 1116
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G G+PG+ G +
Sbjct: 1298 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSTGPE 1347
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPG----------------RNGMDGIP 58
+ + G A +T G G+ G G PG PG G PG G+ G+P
Sbjct: 513 QKGEKGHAGATGPKGLTGIPGAPGAPGFPGPKGEPGDILTFPGMKGDKGDLGSPGVPGLP 572
Query: 59 GKDGLPGKDGIPGTNGTKTDHYAM 82
G G PG+DG+PG G K + M
Sbjct: 573 GLPGTPGQDGLPGLPGPKGEPGGM 596
>gi|332210152|ref|XP_003254169.1| PREDICTED: collagen alpha-1(XXI) chain [Nomascus leucogenys]
Length = 957
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + I G+ GL G G PG PG G PG+ G DG PG G+ G G+PG+ G
Sbjct: 436 DVGSTPAPCICPPGKPGLQGPKGDPGLPGNPGYPGQPGQDGKPGYQGIAGTPGVPGSPGI 495
Query: 76 K 76
+
Sbjct: 496 Q 496
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIP---------GKDGLPGKDGIPGTNGTKTDH 79
GL G G PG+PG DG PG G+ G P G GLPG G PG +G K D
Sbjct: 461 GLPGNPGYPGQPGQDGKPGYQGIAGTPGVPGSPGIQGARGLPGYKGEPGRDGNKGDR 517
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG---IPGTNGTKTDH 79
G+ G G G GEPG+ G+PG +G+ G PG G PG+ G +PG G K D
Sbjct: 647 GQPGTPGSKGSKGEPGIQGMPGASGLKGEPGAMGSPGEPGYMGLPGIQGKKGDK 700
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 29 GRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G G G+ G PG PGL +G PG+ G G G G PG G+PG +G K + AMG+
Sbjct: 623 GPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSKGEPGIQGMPGASGLKGEPGAMGS 681
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
LPG PG DG+PG + G+PG+ G+ G G+PG NG K
Sbjct: 844 LPGLPGRDGVPG---LVGVPGRPGVRGLKGLPGRNGEK 878
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPG---------RNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
SG G G G PGEPG G+PG G GI G+ G G+ GIPG G +
Sbjct: 670 SGLKGEPGAMGSPGEPGYMGLPGIQGKKGDKGNQGEKGIQGQKGENGRQGIPGQQGIQGH 729
Query: 79 HYAMGADTKSFSDGV 93
H A G + GV
Sbjct: 730 HGAKGERGEKGEPGV 744
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G+ G PG G+ G+PG++G G G
Sbjct: 846 GLPGRDGVPGLVGVPGRPGVRGLKGLPGRNGEKGSQGF 883
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G+ G GLPG EPG DG G G+ G PG G+PG G G G K
Sbjct: 489 VPGSPGIQGARGLPGYKGEPGRDGNKGDRGLPGFPGLHGMPGSKGEMGAKGDK 541
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G+ G G PG G G GM G+ G +G PG+ G PG+ G+K
Sbjct: 609 FPGNRGLMGQKGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSK 658
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---------GIPGTNGTKTDH 79
G+ G G G+ G PG+ G PG G G+PG G PG+D G PG +G
Sbjct: 473 GQDGKPGYQGIAGTPGVPGSPGIQGARGLPGYKGEPGRDGNKGDRGLPGFPGLHGMPGSK 532
Query: 80 YAMGA 84
MGA
Sbjct: 533 GEMGA 537
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G G+DG GEPG+ G PG G+ G G+ G PG+ G G G
Sbjct: 589 AGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKGEIGPPGQQGKKGAPG 635
>gi|189066649|dbj|BAG36196.1| unnamed protein product [Homo sapiens]
Length = 957
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + I G+ GL G G PG PG G PG+ G DG PG G+ G G+PG+ G
Sbjct: 436 DVGSTPAPCICPPGKPGLQGPKGDPGLPGNPGYPGQPGQDGKPGYQGIAGTPGVPGSPGI 495
Query: 76 K 76
+
Sbjct: 496 Q 496
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTKTDH 79
G+ G G G GEPG+ G+PG +G+ G PG G PG+ G+PG G K D
Sbjct: 647 GQPGTPGSKGSKGEPGIQGMPGASGLKGEPGATGSPGEPGYMGLPGIQGKKGDK 700
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIP---------GKDGLPGKDGIPGTNGTKTDH 79
GL G G PG+PG DG PG G+ G P G GLPG G PG +G K D
Sbjct: 461 GLPGNPGYPGQPGQDGKPGYQGIAGTPGVPGSPGIQGARGLPGYKGEPGRDGDKGDR 517
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPG---------RNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
SG G G G PGEPG G+PG G GI G+ G G+ GIPG G +
Sbjct: 670 SGLKGEPGATGSPGEPGYMGLPGIQGKKGDKGNQGEKGIQGQKGENGRQGIPGQQGIQGH 729
Query: 79 HYAMGADTKSFSDGV 93
H A G + GV
Sbjct: 730 HGAKGERGEKGEPGV 744
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
LPG PG DG+PG + G+PG+ G+ G G+PG NG K
Sbjct: 844 LPGLPGRDGVPG---LVGVPGRPGVRGLKGLPGRNGEK 878
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G+ G PG G+ G+PG++G G G
Sbjct: 846 GLPGRDGVPGLVGVPGRPGVRGLKGLPGRNGEKGSQGF 883
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G+ G G PG G G GM G+ G +G PG+ G PG+ G+K
Sbjct: 609 FPGNRGLMGQKGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSK 658
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G+ G GLPG EPG DG G G+ G PG G+PG G G G K
Sbjct: 489 VPGSPGIQGARGLPGYKGEPGRDGDKGDRGLPGFPGLHGMPGSKGEMGAKGDK 541
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP------GKDGLPGKDGIPGTNGTKTDHYA 81
G IG G+ G G PG+ G+ G NG G P G G PG G+PG +G K + A
Sbjct: 619 KGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSKGEPGIQGMPGASGLKGEPGA 678
Query: 82 MGA 84
G+
Sbjct: 679 TGS 681
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---------GIPGTNGTKTDH 79
G+ G G G+ G PG+ G PG G G+PG G PG+D G PG +G
Sbjct: 473 GQDGKPGYQGIAGTPGVPGSPGIQGARGLPGYKGEPGRDGDKGDRGLPGFPGLHGMPGSK 532
Query: 80 YAMGA 84
MGA
Sbjct: 533 GEMGA 537
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G G+DG GEPG+ G PG G+ G G+ G PG+ G G G
Sbjct: 589 AGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKGEIGPPGQQGKKGAPG 635
>gi|17974510|gb|AAL50033.1|AF330693_1 alpha 1 chain-like collagen COLA1L precursor [Homo sapiens]
Length = 954
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + I G+ GL G G PG PG G PG+ G DG PG G+ G G+PG+ G
Sbjct: 433 DVGSTPAPCICPPGKPGLQGPKGDPGLPGNPGYPGQPGQDGKPGYQGIAGTPGVPGSPGI 492
Query: 76 K 76
+
Sbjct: 493 Q 493
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTKTDH 79
G+ G G G GEPG+ G+PG +G+ G PG G PG+ G+PG G K D
Sbjct: 644 GQPGTPGSKGSKGEPGIQGMPGASGLKGEPGATGSPGEPGYMGLPGIQGKKGDK 697
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIP---------GKDGLPGKDGIPGTNGTKTDH 79
GL G G PG+PG DG PG G+ G P G GLPG G PG +G K D
Sbjct: 458 GLPGNPGYPGQPGQDGKPGYQGIAGTPGVPGSPGIQGARGLPGYKGEPGRDGDKGDR 514
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPG---------RNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
SG G G G PGEPG G+PG G GI G+ G G+ GIPG G +
Sbjct: 667 SGLKGEPGATGSPGEPGYMGLPGIQGKKGDKGNQGEKGIQGQKGENGRQGIPGQQGIQGH 726
Query: 79 HYAMGADTKSFSDGV 93
H A G + GV
Sbjct: 727 HGAKGERGEKGEPGV 741
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
LPG PG DG+PG + G+PG+ G+ G G+PG NG K
Sbjct: 841 LPGLPGRDGVPG---LVGVPGRPGVRGLKGLPGRNGEK 875
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G+ G PG G+ G+PG++G G G
Sbjct: 843 GLPGRDGVPGLVGVPGRPGVRGLKGLPGRNGEKGSQGF 880
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G+ G G PG G G GM G+ G +G PG+ G PG+ G+K
Sbjct: 606 FPGNRGLMGQKGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSK 655
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G+ G GLPG EPG DG G G+ G PG G+PG G G G K
Sbjct: 486 VPGSPGIQGARGLPGYKGEPGRDGDKGDRGLPGFPGLHGMPGSKGEMGAKGDK 538
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP------GKDGLPGKDGIPGTNGTKTDHYA 81
G IG G+ G G PG+ G+ G NG G P G G PG G+PG +G K + A
Sbjct: 616 KGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSKGEPGIQGMPGASGLKGEPGA 675
Query: 82 MGA 84
G+
Sbjct: 676 TGS 678
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---------GIPGTNGTKTDH 79
G+ G G G+ G PG+ G PG G G+PG G PG+D G PG +G
Sbjct: 470 GQDGKPGYQGIAGTPGVPGSPGIQGARGLPGYKGEPGRDGDKGDRGLPGFPGLHGMPGSK 529
Query: 80 YAMGA 84
MGA
Sbjct: 530 GEMGA 534
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G G+DG GEPG+ G PG G+ G G+ G PG+ G G G
Sbjct: 586 AGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKGEIGPPGQQGKKGAPG 632
>gi|395506153|ref|XP_003757400.1| PREDICTED: collagen alpha-1(XXVII) chain [Sarcophilus harrisii]
Length = 1916
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 31/50 (62%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G GL G+PG G+ GR G +G PG+DG+PGKDG G G + D
Sbjct: 1468 GEAGSRGMQGLVGQPGPRGVVGRQGQEGPPGQDGIPGKDGRAGHQGEQGD 1517
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 28/49 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
SG G DG G GEPG DG G G +G+ GK+G PG GI G G +
Sbjct: 1250 SGPAGPDGLKGDKGEPGPDGERGEKGKEGLKGKEGPPGYPGITGVRGPE 1298
>gi|114607957|ref|XP_001157649.1| PREDICTED: collagen alpha-1(XXI) chain isoform 3 [Pan troglodytes]
gi|397517558|ref|XP_003828976.1| PREDICTED: collagen alpha-1(XXI) chain-like [Pan paniscus]
Length = 957
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + I G+ GL G G PG PG G PG+ G DG PG G+ G G+PG+ G
Sbjct: 436 DVGSTPAPCICPPGKPGLQGPKGDPGLPGNPGYPGQPGQDGKPGYQGIAGTPGVPGSPGI 495
Query: 76 K 76
+
Sbjct: 496 Q 496
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG---IPGTNGTKTDH 79
G+ G G G GEPG+ G+PG +G+ G PG G PG+ G +PG G K D
Sbjct: 647 GQPGTPGSKGSKGEPGIQGMPGASGLKGEPGAMGSPGEPGYMGLPGIQGKKGDK 700
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 29 GRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G G G+ G PG PGL +G PG+ G G G G PG G+PG +G K + AMG+
Sbjct: 623 GPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSKGEPGIQGMPGASGLKGEPGAMGS 681
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 28/51 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G G G+DG PG G+ G PG G GI G GLPG G PG +G K D
Sbjct: 467 GYPGQPGQDGKPGYQGIAGTPGVPGSPGIQGARGLPGYKGEPGRDGDKGDR 517
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
LPG PG DG+PG + G+PG+ G+ G G+PG NG K
Sbjct: 844 LPGLPGRDGVPG---LVGVPGRPGVRGLKGLPGRNGEK 878
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G+ G PG G+ G+PG++G G G
Sbjct: 846 GLPGRDGVPGLVGVPGRPGVRGLKGLPGRNGEKGSQGF 883
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G+ G G PG G G GM G+ G +G PG+ G PG+ G+K
Sbjct: 609 FPGNRGLMGQKGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSK 658
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G+ G GLPG EPG DG G G+ G PG G+PG G G G K
Sbjct: 489 VPGSPGIQGARGLPGYKGEPGRDGDKGDRGLPGFPGLHGMPGSKGEMGAKGDK 541
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---------GIPGTNGTKTDH 79
G+ G G G+ G PG+ G PG G G+PG G PG+D G PG +G
Sbjct: 473 GQDGKPGYQGIAGTPGVPGSPGIQGARGLPGYKGEPGRDGDKGDRGLPGFPGLHGMPGSK 532
Query: 80 YAMGA 84
MGA
Sbjct: 533 GEMGA 537
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G G+DG GEPG+ G PG G+ G G+ G PG+ G G G
Sbjct: 589 AGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKGEIGPPGQQGKKGAPG 635
>gi|402585405|gb|EJW79345.1| hypothetical protein WUBG_09746 [Wuchereria bancrofti]
Length = 221
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+GR GL GR+GLPG PGL G+ GR GIPG G PG G G+ G ++
Sbjct: 84 AGRPGLPGREGLPGAPGLPGVQGR----GIPGPKGAPGPIGPAGSAGAPGEN 131
>gi|334330303|ref|XP_001378458.2| PREDICTED: collagen alpha-1(III) chain isoform 1 [Monodelphis
domestica]
Length = 1461
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 33/63 (52%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A G G DG++G PGEPG +GIPG G G PG G G GIPG
Sbjct: 441 EPGPRGERGEAGIPGQPGAKGEDGKNGNPGEPGANGIPGSPGERGAPGFRGAAGSPGIPG 500
Query: 72 TNG 74
G
Sbjct: 501 EKG 503
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 27/44 (61%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIP 70
SG+ G G G G PGL G+PG G DG PG DG PG+DG P
Sbjct: 984 TSGQNGERGPQGPQGLPGLSGMPGEPGRDGNPGSDGQPGRDGAP 1027
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G G++G G G G+PG +GM G PG+DG PG DG PG +G
Sbjct: 980 GKPGTSGQNGERGPQGPQGLPGLSGMPGEPGRDGNPGSDGQPGRDGA 1026
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLD---GIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR + G G+ G G+PG PG+ G GRNG G G GL G++G+PG NG+
Sbjct: 236 GRPGERGLPGAQGIKGPSGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGDNGS 294
>gi|297686569|ref|XP_002820820.1| PREDICTED: pulmonary surfactant-associated protein A1-like
isoform 3 [Pongo abelii]
gi|395741594|ref|XP_002820821.2| PREDICTED: pulmonary surfactant-associated protein A1-like
isoform 4 [Pongo abelii]
Length = 248
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 19/61 (31%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGI-------------------PGKDGLPGKDGIPGTNGT 75
G G+PG PG G+PGR+G DG+ PG DGLPG G+PG +G
Sbjct: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGEMPCPPGNDGLPGAPGVPGKHGE 87
Query: 76 K 76
K
Sbjct: 88 K 88
>gi|219520386|gb|AAI43866.1| COL21A1 protein [Homo sapiens]
Length = 957
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + I G+ GL G G PG PG G PG+ G DG PG G+ G G+PG+ G
Sbjct: 436 DVGSTPAPCICPPGKPGLQGPKGDPGLPGNPGYPGQPGQDGKPGYQGIAGTPGVPGSPGI 495
Query: 76 K 76
+
Sbjct: 496 Q 496
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTKTDH 79
G+ G G G GEPG+ G+PG +G+ G PG G PG+ G+PG G K D
Sbjct: 647 GQPGTPGSKGSKGEPGIQGMPGASGLKGEPGATGSPGEPGYMGLPGIQGKKGDK 700
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIP---------GKDGLPGKDGIPGTNGTKTDH 79
GL G G PG+PG DG PG G+ G P G GLPG G PG +G K D
Sbjct: 461 GLPGNPGYPGQPGQDGKPGYQGIAGTPGVPGSPGIQGARGLPGYKGEPGRDGDKGDR 517
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPG---------RNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
SG G G G PGEPG G+PG G GI G+ G G+ GIPG G +
Sbjct: 670 SGLKGEPGATGSPGEPGYMGLPGIQGKKGDKGNQGEKGIQGQKGENGRQGIPGQQGIQGH 729
Query: 79 HYAMGADTKSFSDGV 93
H A G + GV
Sbjct: 730 HGAKGERGEKGEPGV 744
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
LPG PG DG+PG + G+PG+ G+ G G+PG NG K
Sbjct: 844 LPGLPGRDGVPG---LVGVPGRPGVRGLKGLPGRNGEK 878
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G+ G PG G+ G+PG++G G G
Sbjct: 846 GLPGRDGVPGLVGVPGRPGVRGLKGLPGRNGEKGSQGF 883
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G+ G G PG G G GM G+ G +G PG+ G PG+ G+K
Sbjct: 609 FPGNRGLMGQKGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSK 658
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G+ G GLPG EPG DG G G+ G PG G+PG G G G K
Sbjct: 489 VPGSPGIQGARGLPGYKGEPGRDGDKGDRGLPGFPGLHGMPGSKGEMGAKGDK 541
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP------GKDGLPGKDGIPGTNGTKTDHYA 81
G IG G+ G G PG+ G+ G NG G P G G PG G+PG +G K + A
Sbjct: 619 KGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSKGEPGIQGMPGASGLKGEPGA 678
Query: 82 MGA 84
G+
Sbjct: 679 TGS 681
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---------GIPGTNGTKTDH 79
G+ G G G+ G PG+ G PG G G+PG G PG+D G PG +G
Sbjct: 473 GQDGKPGYQGIAGTPGVPGSPGIQGARGLPGYKGEPGRDGDKGDRGLPGFPGLHGMPGSK 532
Query: 80 YAMGA 84
MGA
Sbjct: 533 GEMGA 537
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G G+DG GEPG+ G PG G+ G G+ G PG+ G G G
Sbjct: 589 AGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKGEIGPPGQQGKKGAPG 635
>gi|18780273|ref|NP_110447.2| collagen alpha-1(XXI) chain precursor [Homo sapiens]
gi|74752071|sp|Q96P44.1|COLA1_HUMAN RecName: Full=Collagen alpha-1(XXI) chain; Flags: Precursor
gi|15593270|gb|AAL02227.1|AF414088_1 collagen XXI [Homo sapiens]
gi|19310967|gb|AAL86699.1|AF438327_1 alpha 1 type XXI collagen precursor [Homo sapiens]
gi|116496597|gb|AAI26109.1| Collagen, type XXI, alpha 1 [Homo sapiens]
gi|215434893|gb|ACJ66843.1| alpha 1 type XXI collagen precursor [Homo sapiens]
Length = 957
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + I G+ GL G G PG PG G PG+ G DG PG G+ G G+PG+ G
Sbjct: 436 DVGSTPAPCICPPGKPGLQGPKGDPGLPGNPGYPGQPGQDGKPGYQGIAGTPGVPGSPGI 495
Query: 76 K 76
+
Sbjct: 496 Q 496
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTKTDH 79
G+ G G G GEPG+ G+PG +G+ G PG G PG+ G+PG G K D
Sbjct: 647 GQPGTPGSKGSKGEPGIQGMPGASGLKGEPGATGSPGEPGYMGLPGIQGKKGDK 700
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIP---------GKDGLPGKDGIPGTNGTKTDH 79
GL G G PG+PG DG PG G+ G P G GLPG G PG +G K D
Sbjct: 461 GLPGNPGYPGQPGQDGKPGYQGIAGTPGVPGSPGIQGARGLPGYKGEPGRDGDKGDR 517
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPG---------RNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
SG G G G PGEPG G+PG G GI G+ G G+ GIPG G +
Sbjct: 670 SGLKGEPGATGSPGEPGYMGLPGIQGKKGDKGNQGEKGIQGQKGENGRQGIPGQQGIQGH 729
Query: 79 HYAMGADTKSFSDGV 93
H A G + GV
Sbjct: 730 HGAKGERGEKGEPGV 744
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
LPG PG DG+PG + G+PG+ G+ G G+PG NG K
Sbjct: 844 LPGLPGRDGVPG---LVGVPGRPGVRGLKGLPGRNGEK 878
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G+ G PG G+ G+PG++G G G
Sbjct: 846 GLPGRDGVPGLVGVPGRPGVRGLKGLPGRNGEKGSQGF 883
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G+ G G PG G G GM G+ G +G PG+ G PG+ G+K
Sbjct: 609 FPGNRGLMGQKGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSK 658
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G+ G GLPG EPG DG G G+ G PG G+PG G G G K
Sbjct: 489 VPGSPGIQGARGLPGYKGEPGRDGDKGDRGLPGFPGLHGMPGSKGEMGAKGDK 541
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP------GKDGLPGKDGIPGTNGTKTDHYA 81
G IG G+ G G PG+ G+ G NG G P G G PG G+PG +G K + A
Sbjct: 619 KGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSKGEPGIQGMPGASGLKGEPGA 678
Query: 82 MGA 84
G+
Sbjct: 679 TGS 681
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---------GIPGTNGTKTDH 79
G+ G G G+ G PG+ G PG G G+PG G PG+D G PG +G
Sbjct: 473 GQDGKPGYQGIAGTPGVPGSPGIQGARGLPGYKGEPGRDGDKGDRGLPGFPGLHGMPGSK 532
Query: 80 YAMGA 84
MGA
Sbjct: 533 GEMGA 537
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G G+DG GEPG+ G PG G+ G G+ G PG+ G G G
Sbjct: 589 AGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKGEIGPPGQQGKKGAPG 635
>gi|12052774|emb|CAB66559.1| hypothetical protein [Homo sapiens]
Length = 957
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + I G+ GL G G PG PG G PG+ G DG PG G+ G G+PG+ G
Sbjct: 436 DVGSTPAPCICPPGKPGLQGPKGDPGLPGNPGYPGQPGQDGKPGYQGIAGTPGVPGSPGI 495
Query: 76 K 76
+
Sbjct: 496 Q 496
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTKTDH 79
G+ G G G GEPG+ G+PG +G+ G PG G PG+ G+PG G K D
Sbjct: 647 GQPGTPGSKGSKGEPGIQGMPGASGLKGEPGATGSPGEPGYMGLPGIQGKKGDK 700
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIP---------GKDGLPGKDGIPGTNGTKTDH 79
GL G G PG+PG DG PG G+ G P G GLPG G PG +G K D
Sbjct: 461 GLPGNPGYPGQPGQDGKPGYQGIAGTPGVPGSPGIQGARGLPGYKGEPGRDGDKGDR 517
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPG---------RNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
SG G G G PGEPG G+PG G GI G+ G G+ GIPG G +
Sbjct: 670 SGLKGEPGATGSPGEPGYMGLPGIQGKKGDKGNQGEKGIQGQKGENGRQGIPGQQGIQGH 729
Query: 79 HYAMGADTKSFSDGV 93
H A G + GV
Sbjct: 730 HGAKGERGEKGEPGV 744
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
LPG PG DG+PG + G+PG+ G+ G G+PG NG K
Sbjct: 844 LPGLPGRDGVPG---LVGVPGRPGVRGLKGLPGRNGEK 878
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G+ G PG G+ G+PG++G G G
Sbjct: 846 GLPGRDGVPGLVGVPGRPGVRGLKGLPGRNGEKGSQGF 883
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G+ G G PG G G GM G+ G +G PG+ G PG+ G+K
Sbjct: 609 FPGNRGLMGQKGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSK 658
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G+ G GLPG EPG DG G G+ G PG G+PG G G G K
Sbjct: 489 VPGSPGIQGARGLPGYKGEPGRDGDKGDRGLPGFPGLHGMPGSKGEMGAKGDK 541
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP------GKDGLPGKDGIPGTNGTKTDHYA 81
G IG G+ G G PG+ G+ G NG G P G G PG G+PG +G K + A
Sbjct: 619 KGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSKGEPGIQGMPGASGLKGEPGA 678
Query: 82 MGA 84
G+
Sbjct: 679 TGS 681
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---------GIPGTNGTKTDH 79
G+ G G G+ G PG+ G PG G G+PG G PG+D G PG +G
Sbjct: 473 GQDGKPGYQGIAGTPGVPGSPGIQGARGLPGYKGEPGRDGDKGDRGLPGFPGLHGMPGSK 532
Query: 80 YAMGA 84
MGA
Sbjct: 533 GEMGA 537
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G G+DG GEPG+ G PG G+ G G+ G PG+ G G G
Sbjct: 589 AGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKGEIGPPGQQGKKGAPG 635
>gi|51338769|sp|P30754.2|CAFF_RIFPA RecName: Full=Fibril-forming collagen alpha chain
Length = 1027
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGI---PGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+SG+ G+ G +G PG PG+DG PG +G G+PG G PG G+PGT G+ A G
Sbjct: 203 LSGQPGVAGENGHPGMPGMDGANGEPGASGESGLPGPSGFPGPRGMPGTAGSPGQAGAKG 262
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 32/66 (48%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G+ G DG GEPG G G G G PG G+PG G PG G K D G +
Sbjct: 213 NGHPGMPGMDGANGEPGASGESGLPGPSGFPGPRGMPGTAGSPGQAGAKGDGGPTGEQGR 272
Query: 88 SFSDGV 93
+ GV
Sbjct: 273 PGAPGV 278
>gi|297492844|ref|XP_002699906.1| PREDICTED: collagen alpha-5(IV) chain isoform 1 [Bos taurus]
gi|296470939|tpg|DAA13054.1| TPA: type IV collagen alpha 5-like isoform 1 [Bos taurus]
Length = 1691
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG+ GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGHPGRDGEVGLPGEPGLPGQPGLPGIPGSKGE 700
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ GL G G G PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1297 GQPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1342
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
ISG IGL G G GEPGL G PG G G G+ GLPG G PG G
Sbjct: 1070 ISG-IGLPGLPGAKGEPGLPGYPGNPGTKGSMGETGLPGLPGTPGAKG 1116
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ D G ++G G G G PG+PGL G PG G+ G G GLPG G+ G G
Sbjct: 965 EKGDPGLPGIPGVAGPKGYQGLPGDPGQPGLSGQPGLPGLAGPKGNPGLPGMPGLTGPPG 1024
Query: 75 TKTDHYAMG 83
K + MG
Sbjct: 1025 LKGNMGDMG 1033
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G G+PG+ G +
Sbjct: 1304 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSTGPE 1353
>gi|344284671|ref|XP_003414088.1| PREDICTED: collagen alpha-1(IV) chain-like [Loxodonta africana]
Length = 1632
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 15/68 (22%)
Query: 27 ISGRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKDGL---------PGKDGIPG 71
+ G +G G GLPGE PGLDGIPG G G+PG+ G PG DGIPG
Sbjct: 1064 LPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGRPGPTGPAGQKGEPGSDGIPG 1123
Query: 72 TNGTKTDH 79
+ G K +
Sbjct: 1124 SAGEKGES 1131
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G ST I G G G GLPG PG G+PG G G+PG DG+PG G G G
Sbjct: 1043 EKGEKGSTGIPGMPGTPGPKGLPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPG 1102
Query: 75 TKTDHYAMGADTKSFSDGVLPSVQRAIAAGLVIYRF 110
G + SDG+ S +GL F
Sbjct: 1103 RPGPTGPAGQKGEPGSDGIPGSAGEKGESGLPGRGF 1138
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 4 VQGMLQVLEVHDRRDIGRAISTVISGRIGLDG--RDGLPGEPGLDGIPGRNGMDGIPGKD 61
V G QV E D + G G G+ G G PG+PG G PG++G G G
Sbjct: 245 VPGQAQVKEKGDFANKGEKGQKGEPGFQGMPGAGEKGEPGKPGPRGKPGKDGEKGEKGSA 304
Query: 62 GLPGKDGIPGTNGTK 76
G PG G PG G +
Sbjct: 305 GFPGDSGFPGLPGQE 319
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G PGR+G++G+PG G PG G PG G + Y
Sbjct: 452 GFPGQPGAKGDRGSPGRDGLEGLPGPQGSPGLMGQPGAKGEPGEIY 497
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 22/37 (59%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
G G DG PG PGL G G G G PG+ GLPG+ G
Sbjct: 609 GPPGADGFPGSPGLQGPQGDRGFPGAPGRPGLPGEKG 645
>gi|297492848|ref|XP_002699908.1| PREDICTED: collagen alpha-5(IV) chain isoform 3 [Bos taurus]
gi|296470941|tpg|DAA13056.1| TPA: type IV collagen alpha 5-like isoform 3 [Bos taurus]
Length = 1685
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG+ GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGHPGRDGEVGLPGEPGLPGQPGLPGIPGSKGE 700
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ GL G G G PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1291 GQPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1336
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
ISG IGL G G GEPGL G PG G G G+ GLPG G PG G
Sbjct: 1070 ISG-IGLPGLPGAKGEPGLPGYPGNPGTKGSMGETGLPGLPGTPGAKG 1116
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ D G ++G G G G PG+PGL G PG G+ G G GLPG G+ G G
Sbjct: 965 EKGDPGLPGIPGVAGPKGYQGLPGDPGQPGLSGQPGLPGLAGPKGNPGLPGMPGLTGPPG 1024
Query: 75 TKTDHYAMG 83
K + MG
Sbjct: 1025 LKGNMGDMG 1033
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G G+PG+ G +
Sbjct: 1298 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSTGPE 1347
>gi|296470940|tpg|DAA13055.1| TPA: type IV collagen alpha 5-like isoform 2 [Bos taurus]
Length = 1688
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG+ GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGHPGRDGEVGLPGEPGLPGQPGLPGIPGSKGE 700
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ GL G G G PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1294 GQPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1339
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
ISG IGL G G GEPGL G PG G G G+ GLPG G PG G
Sbjct: 1070 ISG-IGLPGLPGAKGEPGLPGYPGNPGTKGSMGETGLPGLPGTPGAKG 1116
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ D G ++G G G G PG+PGL G PG G+ G G GLPG G+ G G
Sbjct: 965 EKGDPGLPGIPGVAGPKGYQGLPGDPGQPGLSGQPGLPGLAGPKGNPGLPGMPGLTGPPG 1024
Query: 75 TKTDHYAMG 83
K + MG
Sbjct: 1025 LKGNMGDMG 1033
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G G+PG+ G +
Sbjct: 1301 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSTGPE 1350
>gi|291244786|ref|XP_002742266.1| PREDICTED: LEThal family member (let-2)-like [Saccoglossus
kowalevskii]
Length = 434
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 11 LEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPG------LDGIPGRNGMDGIPGKDGLP 64
+E + ++GR + ++G +G G G PG PG + G+PG +G G+PG DG
Sbjct: 1 MEKGAKGEVGRPGNFGLAGPVGPTGSPGFPGFPGVKGEAGMQGLPGSDGGVGLPGIDGRD 60
Query: 65 GKDGIPGTNGTKTD 78
G G PG GTK D
Sbjct: 61 GFPGFPGPKGTKGD 74
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPG---RNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G+DGRDG PG PG G G NGM G+PG +G+ G+ G PG +G +
Sbjct: 52 GLPGIDGRDGFPGFPGPKGTKGDIGPNGMLGLPGINGIKGETGKPGIDGPQ 102
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G GL GR GLPG PGL G PG G G G GLPG G+ G++G
Sbjct: 132 GLPGLTGRPGLPGLPGLSGPPGNLGNKGESGDPGLPGIPGLDGSSG 177
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 29 GRIGLDGRDGLPGEPG-----LDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G +G G PGEPG + G PG G+ G PG GLPG G PG G K +
Sbjct: 106 GFPGFNGLKGEPGEPGEAHRGIKGEPGLPGLTGRPGLPGLPGLSGPPGNLGNKGE 160
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 28/50 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I G GL G G PG PGL G+ G G G G+ G PG GIPG +G+
Sbjct: 127 IKGEPGLPGLTGRPGLPGLPGLSGPPGNLGNKGESGDPGLPGIPGLDGSS 176
>gi|194680453|ref|XP_001790186.1| PREDICTED: collagen alpha-5(IV) chain isoform 2 [Bos taurus]
Length = 1685
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG+ GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGHPGRDGEVGLPGEPGLPGQPGLPGIPGSKGE 700
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ GL G G G PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1291 GQPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1336
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
ISG IGL G G GEPGL G PG G G G+ GLPG G PG G
Sbjct: 1070 ISG-IGLPGLPGAKGEPGLPGYPGNPGTKGSMGETGLPGLPGTPGAKG 1116
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ D G ++G G G G PG+PGL G PG G+ G G GLPG G+ G G
Sbjct: 965 EKGDPGLPGIPGVAGPKGYQGLPGDPGQPGLSGQPGLPGLAGPKGNPGLPGMPGLTGPPG 1024
Query: 75 TKTDHYAMG 83
K + MG
Sbjct: 1025 LKGNMGDMG 1033
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G G+PG+ G +
Sbjct: 1298 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSTGPE 1347
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
E ++ + G+ G G G GLPG+PG G PGR+G G G GLPG G+
Sbjct: 287 EKGEQGEPGKRGKPFQDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGLPGPPGL 344
>gi|194680449|ref|XP_001790185.1| PREDICTED: collagen alpha-5(IV) chain isoform 1 [Bos taurus]
Length = 1691
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG+ GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGHPGRDGEVGLPGEPGLPGQPGLPGIPGSKGE 700
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ GL G G G PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1297 GQPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1342
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
ISG IGL G G GEPGL G PG G G G+ GLPG G PG G
Sbjct: 1070 ISG-IGLPGLPGAKGEPGLPGYPGNPGTKGSMGETGLPGLPGTPGAKG 1116
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ D G ++G G G G PG+PGL G PG G+ G G GLPG G+ G G
Sbjct: 965 EKGDPGLPGIPGVAGPKGYQGLPGDPGQPGLSGQPGLPGLAGPKGNPGLPGMPGLTGPPG 1024
Query: 75 TKTDHYAMG 83
K + MG
Sbjct: 1025 LKGNMGDMG 1033
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G G+PG+ G +
Sbjct: 1304 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSTGPE 1353
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
E ++ + G+ G G G GLPG+PG G PGR+G G G GLPG G+
Sbjct: 287 EKGEQGEPGKRGKPFQDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGLPGPPGL 344
>gi|344286326|ref|XP_003414910.1| PREDICTED: collagen alpha-6(IV) chain [Loxodonta africana]
Length = 1740
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 31/50 (62%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
+GR S + G G DGR GLPG PG+ G PG G+ G PG +G PGK G
Sbjct: 1452 VGRQGSKGLPGISGKDGRSGLPGPPGVLGDPGVPGLQGPPGFEGAPGKQG 1501
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GLPG PG G+PG G+DG+PG+ GLPG GI
Sbjct: 671 GLPGSPGPRGLPGDKGIDGLPGQQGLPGPPGI 702
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 17/84 (20%)
Query: 27 ISGRIGLDGRDGLPG---EPGL--------------DGIPGRNGMDGIPGKDGLPGKDGI 69
+ G GL G+DGLPG PGL +G PG G+ G+PG G PG G
Sbjct: 771 LPGFPGLPGKDGLPGNVGSPGLPGPKGAPGDIFGAENGAPGEQGLQGLPGDRGFPGDSGF 830
Query: 70 PGTNGTKTDHYAMGADTKSFSDGV 93
PG G +GA + S G
Sbjct: 831 PGPKGLLGKSGMLGAKGERGSPGA 854
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 30/51 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
SG +GL G GL G PG+ G PG G GI G +G PG G+ G G+K D
Sbjct: 1069 SGSLGLRGLPGLKGAPGITGFPGMPGETGIRGLNGAPGLPGVAGLPGSKGD 1119
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G+ G G PG P L G PG G G+PG GLPGKDG+PG G+
Sbjct: 737 GQPGVRGAKGEPGSAGLVRLPELPGFPGPRGEKGLPGFPGLPGKDGLPGNVGS 789
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGKDGLPGKDGIPG 71
DIG S G GL G GLPG PG G+ PG G G PG GL G +G+PG
Sbjct: 1171 DIGLPGSPGFPGIAGLRGDPGLPGSPGHAGVTGPLGHPGLVGPKGFPGLSGLHGLNGLPG 1230
Query: 72 TNGT 75
T G
Sbjct: 1231 TKGA 1234
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G+ S +G G G+ GLPG L G+PG G+ G G GLPG G+PG G K +
Sbjct: 892 GKKGSRGEAGHPGSTGKRGLPG---LKGLPGSAGLIGFLGSSGLPGATGLPGLPGPKGEK 948
Query: 80 YAMG 83
++G
Sbjct: 949 GSVG 952
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 25/42 (59%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G PG PGL GIPG +G+ GIPG G G G G+ G K D
Sbjct: 955 GFPGIPGLPGIPGASGLKGIPGSPGRIGTSGPAGSPGEKGDR 996
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 12/60 (20%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG------------KDGLPGKDGIPGTNGTK 76
G G G GLPG+ G+DG+PG+ G+ G PG GLPG G+PG G +
Sbjct: 671 GLPGSPGPRGLPGDKGIDGLPGQQGLPGPPGITLPCIITGLYGPSGLPGAPGVPGPKGIR 730
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 23/38 (60%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
LPG PG G G G G+PGKDGLPG G PG G K
Sbjct: 759 LPGFPGPRGEKGLPGFPGLPGKDGLPGNVGSPGLPGPK 796
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ GR G G GLPG GL G PG G+ G G DGLPG+ G+PG G
Sbjct: 655 LPGRKGQHGLTGLPGI-GLPGSPGPRGLPGDKGIDGLPGQQGLPGPPG 701
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G+ G+DG G+ G G G +G DG+PG GLPG G PG G + D
Sbjct: 1143 GIKGKDGPIGDVGFPGNKGEDGKDGVPGDIGLPGSPGFPGIAGLRGD 1189
>gi|332242150|ref|XP_003270247.1| PREDICTED: collagen alpha-2(IV) chain, partial [Nomascus leucogenys]
Length = 1822
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 32/60 (53%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DR D G A G G G DG+PG PGL G G GMDG G GL G+ G PG+ G
Sbjct: 991 DRGDAGLAGERGHPGSPGFKGIDGMPGTPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKG 1050
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 29 GRIGL---DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GRIGL G DG PG PGL G PG G+ G+ GLPG G PG+ G+
Sbjct: 1270 GRIGLPGGKGDDGWPGAPGLPGFPGLRGIRGL---HGLPGTKGFPGSPGS 1316
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
+ G G G +G PG G G PG++G+ G PG G+PG G PG G K D +
Sbjct: 601 LPGPKGFAGINGEPGRKGDKGDPGQHGLPGFPGLKGVPGNVGAPGPKGAKGDSRTI 656
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 25 TVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
T + G GL G+ G PG PG G PGR G+ G G DG PG G+PG G +
Sbjct: 1242 TGVQGPPGLKGQTGFPGLTGPPGSQGEPGRIGLPGGKGDDGWPGAPGLPGFPGLR 1296
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 28/50 (56%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
T G G GR GLPG G DG PG G+ G PG G+ G G+PGT G
Sbjct: 1260 TGPPGSQGEPGRIGLPGGKGDDGWPGAPGLPGFPGLRGIRGLHGLPGTKG 1309
>gi|211607|gb|AAA69962.1| alpha-2 type I collagen [Gallus gallus]
Length = 896
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 29/50 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+SG G G G G PG +G PG G DG PG DG PG+DG PG G +
Sbjct: 431 VSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDGPPGRDGAPGFKGER 480
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
SG +G G +G PGE G DG PG DG PG+DG PG G G G A+GA
Sbjct: 441 SGPVGSPGPNGAPGEAGRDGNPGN---DGPPGRDGAPGFKGERGAPGNPGPSGALGA 494
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 36/80 (45%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+R G A +T G +G+ G G G G G PG NG G G+DG PG DG PG +G
Sbjct: 413 ERGLPGIAGATGEPGPLGVSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDGPPGRDG 472
Query: 75 TKTDHYAMGADTKSFSDGVL 94
GA G L
Sbjct: 473 APGFKGERGAPGNPGPSGAL 492
>gi|410047940|ref|XP_003314261.2| PREDICTED: collagen alpha-1(IV) chain [Pan troglodytes]
Length = 1770
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G +G G GLPGE PGLDGIPG G G+PG + G PG DGIPG+
Sbjct: 1204 GSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 1263
Query: 74 GTKTD 78
G K +
Sbjct: 1264 GEKGE 1268
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G K DH
Sbjct: 955 TGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDH 1009
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 36/79 (45%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G G G PG G+PG G G+PG DG+PG G G GT G
Sbjct: 1193 MPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKG 1252
Query: 87 KSFSDGVLPSVQRAIAAGL 105
+ SDG+ S GL
Sbjct: 1253 EPGSDGIPGSAGEKGEPGL 1271
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 25/43 (58%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G GL G PG G PG G+ G G GLPG DGIPG G
Sbjct: 1192 GMPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKG 1234
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G GIPG G+K +
Sbjct: 925 IKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGV 984
Query: 82 MGADTKSFSDGVL 94
MG + S G +
Sbjct: 985 MGTPGQPGSPGPV 997
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G+ G+PG G PG G PG G + Y
Sbjct: 590 GFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEIY 635
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG------IPGT 72
IG S G G+ G+DG G+PG G G G+ G PG GLPG G +PGT
Sbjct: 1063 IGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGT 1122
Query: 73 NGTK 76
G K
Sbjct: 1123 PGEK 1126
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 26/46 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+GL G GLPG PG+ G PG G G+PG G G G PG G +
Sbjct: 837 VGLPGLKGLPGLPGIPGTPGEKGSIGVPGVPGEHGAIGPPGLQGIR 882
>gi|380795065|gb|AFE69408.1| collagen alpha-2(IV) chain preproprotein, partial [Macaca mulatta]
Length = 1688
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 32/60 (53%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DR D G A G G G DG+PG PGL G G GMDG G GL G+ G PG+ G
Sbjct: 864 DRGDAGLAGERGHPGSPGFKGIDGMPGTPGLKGERGSPGMDGFQGMPGLKGRPGFPGSKG 923
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDG------LPG 65
DR G S + G GL G+ GLPG +PGL G PG++G G PG++G +PG
Sbjct: 777 DRGPPGFRGSQGMPGMPGLKGQPGLPGASGQPGLSGPPGQHGFPGAPGQEGPLGLPGIPG 836
Query: 66 KDGIPGTNGTKTDHYAMG 83
+G+PG G D A G
Sbjct: 837 LEGLPGDRGDPGDIGAPG 854
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 29/47 (61%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GRIGL G G G PG+ G+PG G+ GI G GLPG G PG+ G
Sbjct: 1143 GRIGLPGGKGDDGWPGIAGLPGFPGLRGIRGLHGLPGTKGFPGSPGA 1189
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G G +G PG G G PG++G+ G PG G+PG G PG G K D
Sbjct: 474 LPGPKGFAGINGEPGRKGDKGDPGQHGLPGFPGLKGVPGNVGAPGPKGAKGD 525
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPG---------RNGMDGIPG---KDGLPGKDGIPGTN 73
V+ + G G G+PG+PG G+PG GM G+PG + GLPG G PG +
Sbjct: 752 VLGAQPGPRGDAGVPGQPGFKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGASGQPGLS 811
Query: 74 GTKTDHYAMGA 84
G H GA
Sbjct: 812 GPPGQHGFPGA 822
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 25 TVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
T + G GL G+ G PG PG G PGR G+ G G DG PG G+PG G +
Sbjct: 1115 TGVQGPPGLKGQTGFPGLTGPPGSQGEPGRIGLPGGKGDDGWPGIAGLPGFPGLR 1169
>gi|344264775|ref|XP_003404465.1| PREDICTED: collagen alpha-1(XXI) chain [Loxodonta africana]
Length = 957
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G ++ I G GL G G PG PG G PG+ G DG PG G+ G G+PG+ G
Sbjct: 436 DVGSTLAPCICPPGNPGLQGPKGDPGLPGNPGYPGQPGQDGKPGYQGIMGSPGVPGSPGM 495
Query: 76 K 76
+
Sbjct: 496 Q 496
Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 27/49 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G G PG+PG DG PG G+ G PG G PG G+ G G K
Sbjct: 457 KGDPGLPGNPGYPGQPGQDGKPGYQGIMGSPGVPGSPGMQGVQGLPGYK 505
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 21/70 (30%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNG---------------------MDGIPGKDGLPGK 66
+G G G+DGL GEPG+ G PG G M G+ G DG PG+
Sbjct: 589 AGPPGAPGQDGLRGEPGIPGFPGNQGLMGQKGEIGPPGPQGKKGVPGMHGLMGSDGSPGQ 648
Query: 67 DGIPGTNGTK 76
G PG+ G+K
Sbjct: 649 PGTPGSKGSK 658
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G+ G G+PG PG+ G+ G G G PG+DG G G+PG +G
Sbjct: 479 GYQGIMGSPGVPGSPGMQGVQGLPGYKGEPGRDGEKGDRGLPGFSG 524
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 15/56 (26%)
Query: 36 RDGLPGEPGLDGIPGRNGMDGI---------------PGKDGLPGKDGIPGTNGTK 76
DG PG PG G PGR+G DG+ PG+DGL G+ GIPG G +
Sbjct: 558 NDGFPGLPGRSGEPGRHGKDGLMGSPGFKGEAGPPGAPGQDGLRGEPGIPGFPGNQ 613
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G G G+ G PG+ G PG G+ G+PG G PG+DG G G
Sbjct: 473 GQDGKPGYQGIMGSPGVPGSPGMQGVQGLPGYKGEPGRDGEKGDRG 518
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G G PG G+ G+PG++G G G
Sbjct: 846 GLPGRDGVPGLMGAPGRPGARGLKGLPGRNGAKGNQGF 883
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPG---------RNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
SG G G G PGEPG G+PG +G GI G+ G GK GIPG G +
Sbjct: 670 SGLKGEAGAMGPPGEPGYMGLPGIQGKKGDKGDHGEKGIQGQKGENGKQGIPGQQGIQGH 729
Query: 79 HYAMG 83
H A G
Sbjct: 730 HGAKG 734
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTK---TDHY 80
+ G G G G PG PG DG+ G G+ G PG GL G+ G PG G K H
Sbjct: 579 LMGSPGFKGEAGPPGAPGQDGLRGEPGIPGFPGNQGLMGQKGEIGPPGPQGKKGVPGMHG 638
Query: 81 AMGAD 85
MG+D
Sbjct: 639 LMGSD 643
Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 28 SGRIGLDGRDGLPGEPGLDG------IPGRNGMDGIPGKDGLPGKDGIPGTNG 74
SG G G+DGL G PG G PG++G+ G PG G PG G+ G G
Sbjct: 568 SGEPGRHGKDGLMGSPGFKGEAGPPGAPGQDGLRGEPGIPGFPGNQGLMGQKG 620
>gi|109071570|ref|XP_001110086.1| PREDICTED: collagen alpha-1(XXI) chain-like isoform 2 [Macaca
mulatta]
Length = 959
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+G + I G+ GL G G PG PG G PG+ G DG PG G+ G G+PG+ G
Sbjct: 436 DVGSTPAPCICPPGKPGLQGPKGDPGLPGNPGYPGQPGQDGKPGYQGIAGTPGVPGSPGI 495
Query: 76 K 76
+
Sbjct: 496 Q 496
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIP---------GKDGLPGKDGIPGTNGTKTDH 79
GL G G PG+PG DG PG G+ G P G GLPG G PG +G K D
Sbjct: 461 GLPGNPGYPGQPGQDGKPGYQGIAGTPGVPGSPGIQGARGLPGYKGEPGRDGDKGDR 517
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG---IPGTNGTKTDH 79
G+ G G G GEPG+ G+PG +G+ G PG G PG+ G +PG G K D
Sbjct: 649 GQPGTPGSKGSKGEPGIQGMPGASGLKGEPGAVGSPGEPGYMGLPGIQGKKGDK 702
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGI---PGKDGLPGKDGIPGTNGTK 76
SG G G G PG PG G PGR+G DG+ PG G G G PG +GT+
Sbjct: 552 SGAKGEKGNAGFPGLPGPAGEPGRHGKDGLMGSPGFKGEAGSPGAPGQDGTR 603
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
LPG PG DG+PG + G+PG+ G+ G G+PG NG K
Sbjct: 846 LPGLPGRDGVPG---LMGVPGRPGIRGLKGLPGRNGEK 880
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP------GKDGLPGKDGIPGTNGTKTDHYA 81
G IG G+ G G PG+ G+ G NG G P G G PG G+PG +G K + A
Sbjct: 621 KGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSKGEPGIQGMPGASGLKGEPGA 680
Query: 82 MGA 84
+G+
Sbjct: 681 VGS 683
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G+ G G PG G G GM G+ G +G PG+ G PG+ G+K
Sbjct: 611 FPGNRGLMGQKGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSK 660
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL GRDG+PG G+ G PG G+ G+PG++G G G
Sbjct: 848 GLPGRDGVPGLMGVPGRPGIRGLKGLPGRNGEKGSQGF 885
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G+ G GLPG EPG DG G G+ G PG G+PG G G G K
Sbjct: 489 VPGSPGIQGARGLPGYKGEPGRDGDKGDRGLPGFPGLHGMPGSKGEMGAKGDK 541
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPG---------RNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
SG G G G PGEPG G+PG G GI G+ G G+ GIPG G +
Sbjct: 672 SGLKGEPGAVGSPGEPGYMGLPGIQGKKGDKGNQGEKGIQGQKGDNGRQGIPGQQGIQGH 731
Query: 79 HYAMG 83
H A G
Sbjct: 732 HGAKG 736
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---------GIPGTNGTKTDH 79
G+ G G G+ G PG+ G PG G G+PG G PG+D G PG +G
Sbjct: 473 GQDGKPGYQGIAGTPGVPGSPGIQGARGLPGYKGEPGRDGDKGDRGLPGFPGLHGMPGSK 532
Query: 80 YAMGA 84
MGA
Sbjct: 533 GEMGA 537
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G G+DG GEPG+ G PG G+ G G+ G PG+ G G G
Sbjct: 591 AGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKGEIGPPGQQGKKGAPG 637
>gi|56847616|ref|NP_001007538.1| complement C1q and tumor necrosis factor-related protein 9B
precursor [Homo sapiens]
gi|205687475|sp|B2RNN3.1|C1T9B_HUMAN RecName: Full=Complement C1q and tumor necrosis factor-related
protein 9B; AltName: Full=C1q/TNF-related protein 9B;
Short=CTRP9B; AltName: Full=Complement C1q and tumor
necrosis factor-related protein 9-like; Flags:
Precursor
gi|187953409|gb|AAI37005.1| Collagen triple helix repeat-containing [Homo sapiens]
gi|223460190|gb|AAI37007.1| Collagen triple helix repeat-containing [Homo sapiens]
Length = 333
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 3 RVQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD- 61
R+ +L +E+ + S G G+PG PG +G+PGR+G DG G
Sbjct: 2 RIWWLLLAIEI--------CTGNINSQDTCRQGHPGIPGNPGHNGLPGRDGRDGAKGDKG 53
Query: 62 --GLPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
G PG G PG +GT + GAD K + G+
Sbjct: 54 DAGEPGCPGSPGKDGTSGEKGERGADGKVEAKGI 87
>gi|313230516|emb|CBY18732.1| unnamed protein product [Oikopleura dioica]
Length = 1132
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 28 SGRIGLDGRDGLP-GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+G G G GLP G PGL G PG+NG G+PG G PG DG+PG G
Sbjct: 887 TGMSGPPGPQGLPAGNPGLPGTPGKNGTPGLPGNLGEPGADGLPGAPGA 935
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G IG G GLPG+PG G+PG G+DG G GLPG+ PG NGTK + G
Sbjct: 78 FPGPIGPKGNAGLPGKPGKMGVPGIPGLDGQIGASGLPGR---PGCNGTKGETGPAG 131
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 20 GRAISTVISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G A+ +G+ G DG +G GE G G PG G G PGKDG+PG+DG PGT
Sbjct: 671 GEAVVGPQAGQDGRDGENGPKGERGHQGKSGKPGAAGTPGRPGKDGIPGEDGPPGTK--- 727
Query: 77 TDHYAMGADTKSFSDGVL 94
+ A G+ + DG L
Sbjct: 728 -ECGAKGSSGEPGLDGEL 744
>gi|148670188|gb|EDL02135.1| procollagen, type IV, alpha 4 [Mus musculus]
Length = 1653
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 25/39 (64%)
Query: 36 RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DGLPG PGL G+PG G G PG+ G PG DG PG G
Sbjct: 887 EDGLPGLPGLKGLPGLPGFPGFPGERGKPGPDGEPGRKG 925
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 28/57 (49%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+ G G +G G PG PG G G GIPG+ GLPG G PG G K MG
Sbjct: 797 LKGPKGREGSRGFPGIPGSPGHSCERGAPGIPGQPGLPGTPGDPGAPGWKGQPGDMG 853
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 30/57 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+ G GL G GLPG PG G G+ G DG PG+ G G+ G PG G + A G
Sbjct: 890 LPGLPGLKGLPGLPGFPGFPGERGKPGPDGEPGRKGEVGEKGWPGLKGDLGERGAKG 946
>gi|355559663|gb|EHH16391.1| hypothetical protein EGK_11665, partial [Macaca mulatta]
Length = 2940
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 29/61 (47%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
S + G G G DG PG PG G PG G G+ G GLPG G PG G + G
Sbjct: 1291 SAIAKGERGFPGADGRPGSPGRPGTPGTPGAPGLKGSPGLPGPRGEPGEQGPRGPKGEPG 1350
Query: 84 A 84
A
Sbjct: 1351 A 1351
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GLDGR GL G+PG G PG NG G K G PG+DG+PG G +
Sbjct: 1773 GPPGLDGRSGLDGKPGASGPPGLNGAAG---KAGDPGRDGLPGLRGEQ 1817
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G G G G PGL G+PG G G IPG G PGKDG+PG G K D MG
Sbjct: 2563 GSKGEPGDKGSAGSPGLRGLPGPQGQPGAAGIPGDPGSPGKDGVPGIRGGKGDVGFMG 2620
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GLDG G PG PGL G G G G+PG+ G PGK+G+ G G +
Sbjct: 2630 VKGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDR 2685
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKDGIPG 71
G+ GL+G+ G PG+PG DG G G G P G+DG G+ G+PG
Sbjct: 1836 GKPGLNGKKGEPGDPGEDGRKGEKGDSGAPGREGRDGPKGEHGVPG 1881
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 31/68 (45%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
D+G + G G G G PG+ G G PG G G PG GLPG G PG G
Sbjct: 2537 DMGERGPRGLDGEKGPRGDSGDPGDKGSKGEPGDKGSAGSPGLRGLPGPQGQPGAAGIPG 2596
Query: 78 DHYAMGAD 85
D + G D
Sbjct: 2597 DPGSPGKD 2604
>gi|440891573|gb|ELR45178.1| Collagen alpha-5(IV) chain, partial [Bos grunniens mutus]
Length = 1658
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG+ GLPG+ G+PG G+K +
Sbjct: 635 PGKPGLPGHPGRDGEVGLPGEPGLPGQPGLPGIPGSKGE 673
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ GL G G G PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1264 GQPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1309
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
ISG IGL G G GEPGL G PG G G G+ GLPG G PG G
Sbjct: 1043 ISG-IGLPGLPGPKGEPGLPGYPGNPGTKGSMGETGLPGLPGTPGAKG 1089
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ D G ++G G G G PG+PGL G PG G+ G G GLPG G+ G G
Sbjct: 938 EKGDPGLPGIPGVAGPKGYQGLPGDPGQPGLSGQPGLPGLAGPKGNPGLPGMPGLTGPPG 997
Query: 75 TKTDHYAMG 83
K + MG
Sbjct: 998 LKGNMGDMG 1006
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G G+PG+ G +
Sbjct: 1271 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSTGPE 1320
>gi|297693666|ref|XP_002824129.1| PREDICTED: complement C1q and tumor necrosis factor-related
protein 9A-like isoform 1 [Pongo abelii]
Length = 333
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDG---LPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G G+PG PG +G+PGR+G DG G G PG G PG +GT + GAD K +
Sbjct: 26 GHPGIPGNPGHNGLPGRDGRDGAKGDKGDAGEPGHPGSPGKDGTSGEKGERGADGKVEAK 85
Query: 92 GV 93
G+
Sbjct: 86 GI 87
>gi|268559010|ref|XP_002637496.1| C. briggsae CBR-COL-145 protein [Caenorhabditis briggsae]
gi|206557771|sp|A8XV37.1|CO145_CAEBR RecName: Full=Putative cuticle collagen 145; Flags: Precursor
Length = 294
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++G G DG+ G PG+ G DG PG G G G+ G PG+DG PG G
Sbjct: 160 LAGPAGPDGQPGFPGQRGNDGFPGAPGAPGDNGQPGAPGQDGFPGQPG 207
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G GL G G G+PG PG+ G DG PG G PG +G PG G
Sbjct: 155 TGPAGLAGPAGPDGQPGF---PGQRGNDGFPGAPGAPGDNGQPGAPG 198
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 23/71 (32%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNG-----------------MDGIPGKDGLP------ 64
+G+ G G+DG PG+PG DG G DG PG+DG P
Sbjct: 191 NGQPGAPGQDGFPGQPGADGQRGSGAPGAPGAPGNAGPAGPAGQDGFPGQDGQPGPAGPA 250
Query: 65 GKDGIPGTNGT 75
G+DG PG G+
Sbjct: 251 GQDGFPGNAGS 261
>gi|402860195|ref|XP_003894520.1| PREDICTED: collagen alpha-1(VII) chain [Papio anubis]
Length = 2943
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 29/61 (47%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
S G G G DG PG PG G PG G G+ G GLPG G PG G++ G
Sbjct: 1290 SATAKGERGFPGADGRPGSPGRPGTPGTPGAPGLKGSPGLPGPRGEPGEQGSRGPKGEPG 1349
Query: 84 A 84
A
Sbjct: 1350 A 1350
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GLDGR GL G+PG G PG NG GK G PG+DG+PG G +
Sbjct: 1772 GPPGLDGRSGLDGKPGASGPPGLNGAA---GKAGDPGRDGLPGLRGEQ 1816
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G G G G PGL G+PG G G IPG G PGKDG+PG G K D MG
Sbjct: 2562 GSKGEPGDKGSAGSPGLRGLPGPQGQPGAAGIPGDPGSPGKDGVPGIRGGKGDVGFMG 2619
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GLDG G PG PGL G G G G+PG+ G PGK+G+ G G +
Sbjct: 2629 VKGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDR 2684
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKDGIPG 71
G+ GL+G++G PG+PG DG G G G P G+DG G+ G+PG
Sbjct: 1835 GKPGLNGKNGEPGDPGEDGRKGEKGDSGAPGREGRDGPKGERGVPG 1880
>gi|402902464|ref|XP_003914122.1| PREDICTED: collagen alpha-2(IV) chain [Papio anubis]
Length = 1712
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 32/60 (53%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DR D G A G G G DG+PG PGL G G GMDG G GL G+ G PG+ G
Sbjct: 888 DRGDAGLAGERGHPGSPGFKGIDGMPGTPGLKGERGSPGMDGFQGMPGLKGRAGFPGSKG 947
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDG------LPG 65
DR G S + G GL G+ GLPG +PGL G PG++G G PG++G +PG
Sbjct: 801 DRGTPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLSGPPGQHGFPGAPGQEGPLGLPGIPG 860
Query: 66 KDGIPGTNGTKTDHYAMG 83
+G+PG G D A G
Sbjct: 861 LEGLPGDRGDPGDIGAPG 878
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 29/47 (61%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GRIGL G G G PG+ G+PG G+ GI G GLPG G PG+ G
Sbjct: 1167 GRIGLPGGKGDDGWPGIPGLPGFPGLRGIRGLHGLPGTKGFPGSPGA 1213
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G G G +G PG G G PG++G+ G PG G+PG G PG G K D
Sbjct: 498 LPGPKGFAGINGEPGRKGDKGDPGQHGLPGFPGLKGVPGNVGAPGPKGAKGDS 550
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPG---------RNGMDGIPG---KDGLPGKDGIPGTN 73
V+ + G G G+PG+PG G+PG GM G+PG + GLPG G PG +
Sbjct: 776 VLGAQPGPRGDAGVPGQPGFKGLPGDRGTPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLS 835
Query: 74 GTKTDHYAMGA 84
G H GA
Sbjct: 836 GPPGQHGFPGA 846
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 25 TVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
T + G GL G+ G PG PG G PGR G+ G G DG PG G+PG G +
Sbjct: 1139 TGVQGPPGLKGQTGFPGLTGPPGSQGEPGRIGLPGGKGDDGWPGIPGLPGFPGLR 1193
>gi|189535461|ref|XP_690914.3| PREDICTED: collagen alpha-1(VIII) chain [Danio rerio]
Length = 733
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGM--------DGIPGKDGLPGKDGIP 70
IG+ + G G G+ G PGEPGL G+PG G G PG DGLPGK G+P
Sbjct: 263 IGKPGLNGLPGVPGGQGKPGAPGEPGLAGVPGERGQIGPPGLPGFGKPGLDGLPGKPGLP 322
Query: 71 GTNG 74
G G
Sbjct: 323 GGRG 326
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 25/43 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G G G GLPG PG+ G PG G G PG+ G PG GIPG
Sbjct: 451 GPKGESGHKGLPGLPGVPGKPGTKGELGFPGEKGHPGPMGIPG 493
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 28 SGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G GL G+ G PGE PG G+ G G G G GLPG G+PG GTK +
Sbjct: 423 PGPQGLPGKPGFPGELGQPGPRGLTGPLGPKGESGHKGLPGLPGVPGKPGTKGE 476
>gi|449275401|gb|EMC84273.1| Collagen alpha-1(XXVIII) chain, partial [Columba livia]
Length = 1096
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G GR G G PGL G G G++GIPG+DG+ GK G G GT+
Sbjct: 213 LPGPAGKKGRTGDDGAPGLKGAKGEPGLNGIPGQDGIEGKSGYKGEKGTR 262
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 29/55 (52%)
Query: 22 AISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
A G GL G G G G DG PG G G PG +G+PG+DGI G +G K
Sbjct: 202 ATCNCEKGERGLPGPAGKKGRTGDDGAPGLKGAKGEPGLNGIPGQDGIEGKSGYK 256
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 6/55 (10%)
Query: 28 SGRIGLDGRDGLPG---EPGLDGIPGRNGMD---GIPGKDGLPGKDGIPGTNGTK 76
GR G DG GL G EPGL+GIPG++G++ G G+ G G+ GIPG G +
Sbjct: 220 KGRTGDDGAPGLKGAKGEPGLNGIPGQDGIEGKSGYKGEKGTRGECGIPGIKGDR 274
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 25/45 (55%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
IG G G PG GL G+PG G DG PG+ G PG G+ G G
Sbjct: 473 IGEPGSKGEPGPSGLAGLPGLPGEDGAPGQKGEPGLPGLRGPEGA 517
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G G G GLPG PG DG PG+ G G+PG G G GI G G K D
Sbjct: 479 KGEPGPSGLAGLPGLPGEDGAPGQKGEPGLPGLRGPEGAPGI-GIQGEKGDQ 529
>gi|393909722|gb|EFO24567.2| procollagen [Loa loa]
Length = 1794
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G GL G G+PG+ GL G+PG+ G G PG+ GLPG G+PG G
Sbjct: 1123 LKGDAGLPGAPGIPGQIGLPGLPGQKGEAGFPGQSGLPGAPGLPGKMGV 1171
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ + G GL G G GEPGL G+PG G DG+PG G+ G GIPG G
Sbjct: 1336 ASGVKGEAGLPGIPGAKGEPGLPGLPGLRGKDGLPGAPGIAGLPGIPGAKG 1386
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI---PGTNGTKTDHYAMGAD 85
G G+ G GLPG PG G PG G+ G+ GKDGLPG GI PG G K D GA
Sbjct: 1335 GASGVKGEAGLPGIPGAKGEPGLPGLPGLRGKDGLPGAPGIAGLPGIPGAKGDAGLPGAP 1394
Query: 86 TKSFSDGVL 94
G+L
Sbjct: 1395 GVPGQPGLL 1403
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKDGIPGTNGTKTD 78
G GL G G+PG+PGL G+ G G+ G P G+ G+PGK G+PG G K D
Sbjct: 1386 GDAGLPGAPGVPGQPGLLGLKGEPGLPGFPGPKGEAGIPGKPGLPGLPGLKGD 1438
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNGTKTD 78
I G G GR G PG+ GLDG PG G+ G +PG G+PG+ G+PG G K +
Sbjct: 1096 IPGLPGKQGRQGAPGQKGLDGAPGFPGLKGDAGLPGAPGIPGQIGLPGLPGQKGE 1150
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 29/50 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G GLPG PG DG+PG G+ G G G PGKDG PG G K +
Sbjct: 1221 GAPGYPGIKGLPGFPGKDGLPGLPGIKGEVGMQGAPGKDGFPGIPGQKGE 1270
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 30/52 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G GL G G GE GL G+PG GM G G G PGKDG+PG G K +
Sbjct: 978 AGLPGLPGAPGAKGERGLAGLPGLPGMKGASGYPGAPGKDGLPGIPGAKGER 1029
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRN------GMDGIPGKDGLPGKDGIPGTN 73
G A ++ + G+ GL G G+ GEPGL G PG + G+ GIPG G PG G+PG
Sbjct: 1305 GNAGASGLPGKDGLPGLPGMKGEPGLSGYPGASGVKGEAGLPGIPGAKGEPGLPGLPGLR 1364
Query: 74 G 74
G
Sbjct: 1365 G 1365
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 27 ISGRIGLDGRDGLPGEP---GLDGIPGRNGMDGIPGKDGLPGKDGI 69
+ G GL G+DGLPG P GL GIPG G G+PG G+PG+ G+
Sbjct: 1357 LPGLPGLRGKDGLPGAPGIAGLPGIPGAKGDAGLPGAPGVPGQPGL 1402
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ D G + + G+ GL G L GEPGL G PG G GIPGK GLPG G+ G G
Sbjct: 1385 KGDAGLPGAPGVPGQPGLLG---LKGEPGLPGFPGPKGEAGIPGKPGLPGLPGLKGDCGV 1441
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G GLPGE G+ G+PG+ G G PG+ GL DG PG G K D GA
Sbjct: 1086 GAPGLPGEKGIPGLPGKQGRQGAPGQKGL---DGAPGFPGLKGDAGLPGA 1132
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---------GKDGIPGTNGTKTD 78
+G G G++G+PG PGL G G GM G PG DG P GK G+PG G K +
Sbjct: 757 AGYPGAPGKEGVPGLPGLPGPKGSEGMPGPPGIDGQPGLPGPKGNAGKPGLPGLQGPKGE 816
Query: 79 H 79
Sbjct: 817 R 817
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G+ G G PG+ G DG+PG G+ G+ G+ GLPG G+PG G
Sbjct: 910 GPPGIAGAPGFPGQKGEDGLPGLPGVAGLKGEAGLPGAPGLPGAAG 955
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G GL G GLPG +PG G+ G+ G+ GIPG G G G+PG G K +
Sbjct: 938 LKGEAGLPGAPGLPGAAGQPGFPGLKGQAGLPGIPGAKGDAGLPGLPGAPGAKGER 993
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G GL G PGL G+ G +G G PGKDGLP GIPG G +
Sbjct: 983 LPGAPGAKGERGLAGLPGLPGMKGASGYPGAPGKDGLP---GIPGAKGER 1029
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 13 VHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
+H A +G GL G+DGLPG L G+ G G+ G PG G+ G+ G+PG
Sbjct: 1292 IHGNHCASIAGPKGNAGASGLPGKDGLPG---LPGMKGEPGLSGYPGASGVKGEAGLPGI 1348
Query: 73 NGTKTD 78
G K +
Sbjct: 1349 PGAKGE 1354
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
S + G G+DG+ GLPG G G PG G+ G G+ G PG G+PG G
Sbjct: 780 SEGMPGPPGIDGQPGLPGPKGNAGKPGLPGLQGPKGERGYPGSPGLPGAKG 830
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGK 66
+ G G G G+PG+PGL G+PG G + G+PG+DG PGK
Sbjct: 1411 LPGFPGPKGEAGIPGKPGLPGLPGLKGDCGVPGVPGRDGAPGK 1453
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT---NGTKTDHYAMG 83
+ G G+ G G PG PG DG+PG G G G +GLPG+ G PG +G K D G
Sbjct: 998 LPGLPGMKGASGYPGAPGKDGLPGIPGAKGERGFNGLPGEKGEPGPAARDGAKGDAGLPG 1057
Query: 84 A 84
A
Sbjct: 1058 A 1058
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 9/55 (16%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKDG---LPGKDGIPGTNG 74
G+ GLDG G PG PG GIPG+ G+ G+PG+ G PG+ G+PG G
Sbjct: 1110 GQKGLDGAPGFPGLKGDAGLPGAPGIPGQIGLPGLPGQKGEAGFPGQSGLPGAPG 1164
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 22 AISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNG 74
A S + G G DG GLPG G G PG G +G+PG GLP G +G+PG G
Sbjct: 733 AESQLKPGPPGKDGLPGLPGPKGDAGYPGAPGKEGVPGLPGLPGPKGSEGMPGPPG 788
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G GL G GLPG PGL G G+ G G+ G+ GLP GIPG G
Sbjct: 932 LPGVAGLKGEAGLPGAPGLPGAAGQPGFPGLKGQAGLP---GIPGAKG 976
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 30 RIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G+DGLPG PG G G G PGK+G+PG G+PG G++
Sbjct: 738 KPGPPGKDGLPGLPGPKG---DAGYPGAPGKEGVPGLPGLPGPKGSE 781
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 28/50 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G GL G GL GE GL G PG G G PG GL G+ G+PG G K D
Sbjct: 928 GLPGLPGVAGLKGEAGLPGAPGLPGAAGQPGFPGLKGQAGLPGIPGAKGD 977
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 28/50 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I+G G G+ G G PGL G+ G G G+PG GLPG G PG G K
Sbjct: 914 IAGAPGFPGQKGEDGLPGLPGVAGLKGEAGLPGAPGLPGAAGQPGFPGLK 963
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G GL G GLPG PG+ G+PG+ G G PG G G G PG G
Sbjct: 869 LPGVSGLKGEAGLPGAPGIAGLPGQKGDAGFPGLPGAEGPVGPPGIAGA 917
>gi|341876018|gb|EGT31953.1| CBN-COL-61 protein [Caenorhabditis brenneri]
Length = 307
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 21 RAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGM---DGIPGKDGLPGKDGIPGTNG 74
R +G G GRDG PG PG DG PG G DG PG+ G PG GIPG G
Sbjct: 144 RDCIRCPAGLPGYPGRDGAPGLPGPDGKPGNPGYRGSDGKPGRPGEPGNAGIPGRPG 200
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
G G DG+ G PGEPG GIPGR G D GK GLPG+DG
Sbjct: 176 GYRGSDGKPGRPGEPGNAGIPGRPGED---GKPGLPGRDG 212
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 29 GRIGLDGRDGLPGEPGL---DGIPGRNGMDG---IPGKDGLPGKDGIPGTNGTK 76
G GL G DG PG PG DG PGR G G IPG+ G GK G+PG +G K
Sbjct: 161 GAPGLPGPDGKPGNPGYRGSDGKPGRPGEPGNAGIPGRPGEDGKPGLPGRDGKK 214
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 27 ISGRIGLDGRDGLPGEPGLD-----GIPGRNGMDGIPGKDGLPGKDGIPG 71
I GR G DG+ GL PG D G+PGR G G PGK+G PG G PG
Sbjct: 195 IPGRPGEDGKPGL---PGRDGKKGRGMPGRMGRIGFPGKEGQPGLSGKPG 241
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 30 RIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
R L RD + GL G PGR+G G+PG DG PG G G++G
Sbjct: 138 RCPLPERDCIRCPAGLPGYPGRDGAPGLPGPDGKPGNPGYRGSDG 182
>gi|297304553|ref|XP_002806397.1| PREDICTED: hypothetical protein LOC703814 isoform 3 [Macaca
mulatta]
Length = 1688
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 27 ISGRIGLDGRDGLPG---------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G+ GLPG PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1283 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1339
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG G+ G G GLPG G PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKG 1116
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G GIPG+ G +
Sbjct: 1301 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGIPGSAGPE 1350
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G PG+PGL G+PG G G PG G PG+ PG NG K D
Sbjct: 1283 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGR---PGLNGMKGD 1325
>gi|109131884|ref|XP_001098546.1| PREDICTED: hypothetical protein LOC703814 isoform 1 [Macaca
mulatta]
Length = 1691
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 27 ISGRIGLDGRDGLPG---------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G+ GLPG PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1286 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1342
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG G+ G G GLPG G PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKG 1116
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G GIPG+ G +
Sbjct: 1304 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGIPGSAGPE 1353
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G PG+PGL G+PG G G PG G PG+ PG NG K D
Sbjct: 1286 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGR---PGLNGMKGD 1328
>gi|313229600|emb|CBY18415.1| unnamed protein product [Oikopleura dioica]
Length = 892
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 27/42 (64%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GLPG PG DG+PGR+GMDG G+ G PG+ G G G H
Sbjct: 514 GLPGAPGKDGLPGRHGMDGKDGQQGPPGERGPRGYEGPPGQH 555
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G DG+DG G G DG+PG++G DG K+GL GK+G PG G
Sbjct: 141 EGPRGADGKDGERGPAGADGLPGKDGADG---KNGLDGKNGEPGQQG 184
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGI---PGKDGLPGKDGIPGTNG 74
+G+ G G GL GE G DG+ GRNG+ G+ PG DG G+DG+PG G
Sbjct: 360 AGQRGETGTAGLKGEKGEDGLDGRNGIPGLQGPPGADGRSGEDGLPGIPG 409
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G+ G G +G G G DG G G DG+PGKDG GK+G+ G NG
Sbjct: 131 LPGKQGERGPEGPRGADGKDGERGPAGADGLPGKDGADGKNGLDGKNG 178
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 27 ISGRIGLDGRDGL---PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+ G+ G DG++GL GEPG G G G+DG+ G G GKDG G G + + G
Sbjct: 161 LPGKDGADGKNGLDGKNGEPGQQGPAGERGLDGLDGPAGPAGKDGAQGAQGIQGERGEKG 220
Query: 84 ADTKSFSDGVLPS 96
+ +G+ P+
Sbjct: 221 DQGEPGKNGMHPN 233
>gi|17557174|ref|NP_505670.1| Protein COL-151 [Caenorhabditis elegans]
gi|3873648|emb|CAA94869.1| Protein COL-151 [Caenorhabditis elegans]
Length = 325
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 35 GRDGLPGEPGLDGIPGR---NGMDGIPGKDGLPGKDGIPGTNGT 75
G G PG PGL G PG GMDGIPG GLPG G+PG NG+
Sbjct: 153 GPQGQPGRPGLMGHPGDVGVTGMDGIPGGRGLPGYPGMPGDNGS 196
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
G +G+ G DG+PG GL G PG G +G G +G G G PG +GT++
Sbjct: 168 GDVGVTGMDGIPGGRGLPGYPGMPGDNGSGGANGHDGATGQPGRSGTRS 216
>gi|5921192|sp|P02467.2|CO1A2_CHICK RecName: Full=Collagen alpha-2(I) chain; AltName: Full=Alpha-2 type
I collagen; Flags: Precursor
Length = 1362
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 29/50 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+SG G G G G PG +G PG G DG PG DG PG+DG PG G +
Sbjct: 897 VSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDGPPGRDGAPGFKGER 946
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
SG +G G +G PGE G DG PG DG PG+DG PG G G G A+GA
Sbjct: 907 SGPVGSPGPNGAPGEAGRDGNPGN---DGPPGRDGAPGFKGERGAPGNPGPSGALGA 960
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDG 68
I G GLDG G PG PG G PG NG G PG GLPG+ G
Sbjct: 178 IRGHNGLDGLTGQPGAPGTKGEPGAPGENGTPGQPGARGLPGERG 222
>gi|402911093|ref|XP_003918177.1| PREDICTED: collagen alpha-5(IV) chain-like, partial [Papio anubis]
Length = 1068
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PGEPGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGEPGLPGNPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 700
>gi|326426687|gb|EGD72257.1| hypothetical protein PTSG_00277 [Salpingoeca sp. ATCC 50818]
Length = 2847
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 30/57 (52%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GR +G G G G PGE GLDG G+ G G PG DG PG DG PG G K
Sbjct: 702 GRPGPRGATGARGSRGETGSPGEDGLDGRKGQRGPSGTPGSDGTPGADGTPGVTGDK 758
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPGTNGTKTDHYAMGA 84
+GR G G DG GEPGL G PG +G DG G+DG PG G GT GT + A GA
Sbjct: 2501 AGRQGESGLDGDVGEPGLPGEPGEDGADGADGEDGTPGARGDKGFAGTPGTDGEPGADGA 2560
Query: 85 D 85
D
Sbjct: 2561 D 2561
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 13 VHDRRDIGRAISTVISGRIGLDGRDGLPG------EPGLDGIPGRNGMDGIPGKDGLPGK 66
DR D G G IG DG DG PG PGL G G G+ G PG DGLPG
Sbjct: 2423 AGDRGDDGTPGPRGERGDIGPDGADGTPGVDGSNGSPGLKGQRGFTGLVGEPGDDGLPGS 2482
Query: 67 DGIPGTNGTK 76
DG PG G K
Sbjct: 2483 DGAPGPAGPK 2492
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 27 ISGRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGK------DGLPGKDGIPGTNGTKT 77
+ GR G DG +G GE GLDG PG G DG PG GLPG+DGIPG G
Sbjct: 1462 VPGRRGADGPRGPEGFKGEAGLDGRPGNPGPDGTPGNKGRRGDSGLPGRDGIPGPRGATG 1521
Query: 78 DH 79
D
Sbjct: 1522 DK 1523
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 13 VHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
DR D G I GR G DGL GEPG DG GR GM G G G G DGI G+
Sbjct: 1808 TGDRGDSGIPGDKGIKGRTG---EDGLRGEPGFDGTDGRRGMQGDKGFRGADGADGIDGS 1864
Query: 73 NGTKTDHYAMGADTKSFSDGV 93
G + GAD + DG+
Sbjct: 1865 PGPRGAPGDSGADGRPGEDGL 1885
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 33/64 (51%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GR I G G DG DG G+PG++G G G GI G DG PG DG PG +G
Sbjct: 2355 GRQGEDGIPGTPGFDGTDGAVGDPGINGPRGEKGERGIDGIDGNPGTDGNPGADGAPGPD 2414
Query: 80 YAMG 83
A G
Sbjct: 2415 GAKG 2418
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 28/52 (53%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
GLDG DG PG PG G G G G G G PG DG+PG +G K + G
Sbjct: 1956 GLDGTDGAPGAPGAQGESGLKGQPGDAGFRGAPGSDGVPGEDGEKGERGPQG 2007
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPG---RNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GLDGR PG PG DG PG R G G+PG+DG+PG G G G K
Sbjct: 1477 FKGEAGLDGR---PGNPGPDGTPGNKGRRGDSGLPGRDGIPGPRGATGDKGYK 1526
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 29 GRIGLDG---RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G GLDG GLPGEPG DG G +G DG PG G G G PGT+G A GA
Sbjct: 2505 GESGLDGDVGEPGLPGEPGEDGADGADGEDGTPGARGDKGFAGTPGTDGEPGADGADGA 2563
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 33/70 (47%), Gaps = 18/70 (25%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGI------PGRN------------GMDGIPGKDGLPGK 66
T G G G DG+PG PG DG PG N G+DG PG DG PG
Sbjct: 2348 TGPEGLKGRQGEDGIPGTPGFDGTDGAVGDPGINGPRGEKGERGIDGIDGNPGTDGNPGA 2407
Query: 67 DGIPGTNGTK 76
DG PG +G K
Sbjct: 2408 DGAPGPDGAK 2417
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 24/93 (25%)
Query: 17 RDIGRAISTVISGRIGLDGRDGLPGEPGLDG------------IPGRNGMD--------- 55
RD+ + + + G G G+DG PGEPGL G +PGR G D
Sbjct: 1419 RDLTQQLCSGYDGVDGTPGQDGTPGEPGLKGLPGDDGFDGTDGVPGRRGADGPRGPEGFK 1478
Query: 56 ---GIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G+ G+ G PG DG PG G + D G D
Sbjct: 1479 GEAGLDGRPGNPGPDGTPGNKGRRGDSGLPGRD 1511
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G G G G PG DG GR G G PG DG PG DG PG +G
Sbjct: 169 GQRGPQGASGDNGTPGNDGTNGRKGQRGAPGPDGTPGTDGAPGVDG 214
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP------GKDGLPGKDGIPG 71
D G + +GR G G G G PG DG PG +G+DG P G+DGLPG G PG
Sbjct: 179 DNGTPGNDGTNGRKGQRGAPGPDGTPGTDGAPGVDGVDGNPGPQGPRGEDGLPGAVGDPG 238
Query: 72 TNG 74
T+G
Sbjct: 239 TDG 241
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 27/48 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GR G DG G PG+ G DG G G G G DG+PG DG G GTK
Sbjct: 2007 GRAGEDGLIGAPGDDGFDGTNGARGPAGPAGNDGIPGTDGADGARGTK 2054
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+R D GR + G G G+ G G G +G PG +G +G G+ G PG DG PGT+G
Sbjct: 149 ERGDTGRQGDPGVDGVPGRKGQRGPQGASGDNGTPGNDGTNGRKGQRGAPGPDGTPGTDG 208
Query: 75 T 75
Sbjct: 209 A 209
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 31/61 (50%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G+DG G G PG DG PG +G G+ G G G DG PG G + D GAD D
Sbjct: 2394 GIDGNPGTDGNPGADGAPGPDGAKGVKGVAGDRGDDGTPGPRGERGDIGPDGADGTPGVD 2453
Query: 92 G 92
G
Sbjct: 2454 G 2454
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 36/78 (46%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
R D G I G G GR G PG G +G G G+ G G+DGLPG G PG +G
Sbjct: 87 RGDPGDMGDNGIQGPKGDKGRQGTPGFDGTNGDKGEKGVRGPSGEDGLPGPRGFPGRDGD 146
Query: 76 KTDHYAMGADTKSFSDGV 93
K + G DGV
Sbjct: 147 KGERGDTGRQGDPGVDGV 164
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 27 ISGRIGLDGRDGLPGE---------PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
+ G G GRDG GE PG+DG+PGR G G G G G G GTNG K
Sbjct: 134 LPGPRGFPGRDGDKGERGDTGRQGDPGVDGVPGRKGQRGPQGASGDNGTPGNDGTNGRKG 193
Query: 78 DHYAMGADTKSFSDGV 93
A G D +DG
Sbjct: 194 QRGAPGPDGTPGTDGA 209
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG---LPGKDGIPG 71
D D G A + GR G G +G G PG DG G G+ G PG G PG+DG+ G
Sbjct: 2260 DTGDTGPAGPQGVKGRDGEVGLEGPRGRPGTDGAKGEKGIAGTPGAPGPRGRPGEDGLDG 2319
Query: 72 TNGTKTDHYAMGADTKSFSDGV 93
G + D G+D ++G
Sbjct: 2320 RKGRRGDTGPAGSDGSDGANGA 2341
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGKDGIPGTNGTK 76
GR G G G DG PG G+DG PG G DG+PG G PG DG GT+G +
Sbjct: 190 GRKGQRGAPGPDGTPGTDGAPGVDGVDGNPGPQGPRGEDGLPGAVGDPGTDGFDGTDGVR 249
Query: 77 TDH 79
D
Sbjct: 250 GDR 252
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 24/76 (31%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP------------------------GKD 67
G DG DG+ G PG G PG +G DG PG+DGL G D
Sbjct: 1854 GADGADGIDGSPGPRGAPGDSGADGRPGEDGLNGTPGVDGGPGDPGDAGARGPKGFRGAD 1913
Query: 68 GIPGTNGTKTDHYAMG 83
G PGT+GT D G
Sbjct: 1914 GTPGTDGTPGDKGQRG 1929
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 26/48 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I+G G DG DG G+PGL G PG G G G G PG G PG G
Sbjct: 323 IAGTDGFDGTDGPRGDPGLPGEPGARGSRGPSGTPGTPGSKGQPGPRG 370
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 28/59 (47%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
R D G A + G G DG DG PG G+ G G N DG PG G G DG G G
Sbjct: 2540 RGDKGFAGTPGTDGEPGADGADGAPGPRGIKGRAGSNAPDGAPGDPGFTGTDGAQGPRG 2598
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G G +G DG+PG G G PG G+ G+ G G G DGI G NG
Sbjct: 1078 TGNPGANGSDGVPGSDGPRGAPGEQGLKGLRGDPGFDGTDGIDGRNGAN 1126
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGI---PGRNGMDGIPGK---DGLPGKDGIPG 71
D G + G G DG G PGE GL G+ PG +G DGI G+ +G PG DG G
Sbjct: 1077 DTGNPGANGSDGVPGSDGPRGAPGEQGLKGLRGDPGFDGTDGIDGRNGANGAPGPDGARG 1136
Query: 72 TNGTKTDHYAMG 83
+ G + D A G
Sbjct: 1137 SQGDRGDRGASG 1148
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G G G G+PGLDG G +G G PG G+PG G PG++G
Sbjct: 2109 GVLGPKGYSGPKGDPGLDGTDGADGAVGDPGPSGIPGPSGTPGSDG 2154
Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 34/70 (48%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
R D G A S G G +G GL G GL G G +G+ G PG DG G G PG NG
Sbjct: 2324 RGDTGPAGSDGSDGANGANGDKGLTGPEGLKGRQGEDGIPGTPGFDGTDGAVGDPGINGP 2383
Query: 76 KTDHYAMGAD 85
+ + G D
Sbjct: 2384 RGEKGERGID 2393
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
+GR G DG +G PG G G+ G G DG G DG PG G G G++ + + G D
Sbjct: 668 AGRAGEDGLNGTPGRDGEQGLKGDPGFDGTDGVDGRPGPRGATGARGSRGETGSPGED 725
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGL------PGEPGLDGIPGRNGMD------GIPG 59
E +R GRA + G G DG DG G G DGIPG +G D GI G
Sbjct: 1999 EKGERGPQGRAGEDGLIGAPGDDGFDGTNGARGPAGPAGNDGIPGTDGADGARGTKGIQG 2058
Query: 60 KDGLPGKDGIPGTNGTKTDHYAMGA 84
+DGLPG G+ GT+G + + GA
Sbjct: 2059 EDGLPGVPGLTGTDGPRGPDGSTGA 2083
>gi|308503380|ref|XP_003113874.1| CRE-ROL-1 protein [Caenorhabditis remanei]
gi|308263833|gb|EFP07786.1| CRE-ROL-1 protein [Caenorhabditis remanei]
Length = 457
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
I G+ GL G G PGEPG+DG PG +G+ G PG+DG+ G G
Sbjct: 393 IPGKDGLGGDQGAPGEPGIDGEPGLDGVPGNPGRDGVNGHGG 434
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 22/35 (62%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
PG PG DG+ G G G PG DG PG DG+PG G
Sbjct: 391 PGIPGKDGLGGDQGAPGEPGIDGEPGLDGVPGNPG 425
>gi|355705061|gb|EHH30986.1| Collagen alpha-6(IV) chain, partial [Macaca mulatta]
Length = 1684
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G+ G +G G PG PGL G PG G G+PG GLPGKDG+PGT G+ +
Sbjct: 681 GQPGSNGNKGKPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGTIGSPGLPGSK 740
Query: 83 GADTKSF 89
GA F
Sbjct: 741 GATGDIF 747
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG---KDGIPGTNGT 75
+G+ + SG G+ G+ GLPG PG G G G G G+ G PG K G+PG G
Sbjct: 802 VGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGL 861
Query: 76 KTDHYAMGADTKSFSDGV--LPSVQ 98
+ +G S GV LP++
Sbjct: 862 PGNPGLIGLKGSPGSPGVAGLPALS 886
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 24/42 (57%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G PG PGL GIPG G+ GIPG G G G GT G K D
Sbjct: 899 GFPGIPGLPGIPGTRGLKGIPGSTGKMGPSGHAGTPGEKGDR 940
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G G G PG PG G PG +G GI GK GLPG G PGT+G
Sbjct: 785 GLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSG 833
>gi|348528105|ref|XP_003451559.1| PREDICTED: collagen alpha-1(XXVII) chain A-like [Oreochromis
niloticus]
Length = 1784
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT--KTDHYAMGAD 85
SG G+ GR+G G PG+DG+PG++G GIPG+ G G+ G+PG G+ KT + D
Sbjct: 1375 SGPRGVVGREGQEGVPGVDGVPGKDGSKGIPGEHGDDGEAGLPGKAGSSGKTGVPGLPGD 1434
Query: 86 TKSF 89
+F
Sbjct: 1435 QGAF 1438
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G+ G G+ G PG+PGL G PG G G PG G PG+ G+PG
Sbjct: 652 GQPGRKGQKGFPGQPGLPGEPGEQGPVGSPGAKGYPGRQGLPG 694
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
D G+ +G G G +G+ G G G+ GR G +G+PG DG+PGKDG G G
Sbjct: 1350 DQGQKGKQGQAGPKGARGPEGVGGPSGPRGVVGREGQEGVPGVDGVPGKDGSKGIPGEHG 1409
Query: 78 DHYAMGADTKSFSDG 92
D G K+ S G
Sbjct: 1410 DDGEAGLPGKAGSSG 1424
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+ G G+ GLPGEPG G G G G PG+ GLPG G G G +
Sbjct: 658 GQKGFPGQPGLPGEPGEQGPVGSPGAKGYPGRQGLPGPIGPMGPKGVR 705
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G IGL+G+ G G PG G PG G G PG+ G G GI G +G+ D
Sbjct: 1023 AGEIGLEGKKGPDGPPGKLGFPGPQGKQGEPGETGPKGFSGIQGPSGSPGDK 1074
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G+ G G+ G+ G+PG G G G+ GLPG+ G PG G K
Sbjct: 1412 GEAGLPGKAGSSGKTGVPGLPGDQGAFGPKGERGLPGQSGPPGKRGFK 1459
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 31/66 (46%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G+IG+DG G PG PGL G PG G G G G G+ G G G K G S
Sbjct: 1316 GQIGVDGERGRPGAPGLPGHPGPQGQQGPKGAKGDQGQKGKQGQAGPKGARGPEGVGGPS 1375
Query: 89 FSDGVL 94
GV+
Sbjct: 1376 GPRGVV 1381
>gi|348501288|ref|XP_003438202.1| PREDICTED: inner ear-specific collagen-like [Oreochromis niloticus]
Length = 498
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 30/51 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G G G GL G+PG G PG NG GIPG +GL G GIPG+ G K +
Sbjct: 213 GEKGERGFPGLKGDPGERGEPGLNGTKGIPGPEGLMGPPGIPGSKGQKGEQ 263
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPG---RNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G G+PG+PG G PG G G PG G PG+ G PG NGTK
Sbjct: 189 GPAGLPGTPGIPGKPGEKGDPGPKGEKGERGFPGLKGDPGERGEPGLNGTK 239
Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G GL+G G+PG GL G PG G G G+ G P + +PG G K DH
Sbjct: 231 GEPGLNGTKGIPGPEGLMGPPGIPGSKGQKGEQGQP-SECLPGEKGEKGDH 280
>gi|410896660|ref|XP_003961817.1| PREDICTED: collagen alpha-2(IV) chain-like [Takifugu rubripes]
Length = 1524
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 27 ISGRIGLDGRDGLP-------GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ GR G G G P G+PG G+PG GM G+ GK G+ G DG+PG GTK
Sbjct: 854 VPGREGFHGLPGDPSNEKGYRGDPGAQGLPGIKGMPGVSGKRGISGFDGMPGPKGTKGSP 913
Query: 80 YAMGADTKSFSDGV 93
A GA + G+
Sbjct: 914 GAYGASGEKGRKGI 927
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++G G G +G+PG PG G G+ G DG G +G PG DGIPG NG
Sbjct: 88 LTGVPGFSGSNGIPGHPGQGGPRGKPGADGCNGTNGEPGLDGIPGRNG 135
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 30/55 (54%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
S I G G G G PG G +G G G+DGIPG++G PG G PG G K D
Sbjct: 97 SNGIPGHPGQGGPRGKPGADGCNGTNGEPGLDGIPGRNGRPGFSGQPGRKGEKGD 151
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 40/104 (38%), Gaps = 19/104 (18%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD- 85
SG G+DG+ G PG G G G G DG PG G PG G+PG G H G
Sbjct: 960 TSGFAGVDGQKGNPGNQGQKGFLGIPGTDGHPGFPGFPGNRGVPGLKGLYGLHGLKGQKG 1019
Query: 86 -----------------TKSFS-DGVLPSVQRAIAAGLVIYRFH 111
TK DG P+ QR + L + F
Sbjct: 1020 LQGPAGLEIVGPTGDPGTKGLKGDGGEPNNQRGVPGSLGLKGFQ 1063
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 29/57 (50%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
I G+ GL G G G PG DGI G+ G+ G PG G G DG G G + +G
Sbjct: 927 IKGQKGLTGEVGERGTPGFDGIQGKTGISGDPGTSGFAGVDGQKGNPGNQGQKGFLG 983
>gi|321462286|gb|EFX73311.1| hypothetical protein DAPPUDRAFT_109962 [Daphnia pulex]
Length = 361
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 27/43 (62%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 67
+ +G+ G DGRDG G PG G PG NG DG GKDG GKD
Sbjct: 161 SGTNGKDGKDGRDGQEGAPGPQGTPGENGKDGQEGKDGQNGKD 203
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 35/61 (57%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
T +G+ G DG+ G G PGL G+ G +G DG PG GLPG G PG G+ + GA
Sbjct: 251 TGPAGKPGKDGQTGQAGAPGLHGLHGTDGEDGDPGTPGLPGDPGDPGLQGSFGPPGSNGA 310
Query: 85 D 85
D
Sbjct: 311 D 311
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G +G+DG G GL G G++G DG G++G PG G PG NG
Sbjct: 142 VEGNDGKNGKDGQTGLTGLSGTNGKDGKDGRDGQEGAPGPQGTPGENG 189
>gi|62666698|ref|XP_343779.2| PREDICTED: collagen alpha-5(IV) chain [Rattus norvegicus]
gi|109512412|ref|XP_001055156.1| PREDICTED: collagen alpha-5(IV) chain [Rattus norvegicus]
Length = 1691
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 28/37 (75%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K
Sbjct: 662 PGKPGLPGNPGRDGEVGLPGDPGLPGQPGLPGIPGSK 698
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 26/44 (59%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG G+ G G+ GLPG G PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSMGEAGLPGLPGSPGAKG 1116
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+ G G G G PG PGL G+PG G DG+P GLPG G PG
Sbjct: 552 TLPGMKGEKGELGSPGAPGLPGLPGSPGKDGLP---GLPGPKGEPG 594
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 23/39 (58%)
Query: 36 RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G PGEPG G PG++G G PG GLPG G PG G
Sbjct: 287 EKGEPGEPGKRGKPGKDGETGQPGIPGLPGDPGYPGEPG 325
>gi|350416745|ref|XP_003491082.1| PREDICTED: collagen alpha-1(XXIV) chain-like isoform 1 [Bombus
impatiens]
Length = 894
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 29/52 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GR G G G+PG+PGL G+PG G G+PG G G G PG G K D
Sbjct: 764 QGRPGRIGTQGIPGDPGLPGLPGERGFVGLPGPQGAIGLQGSPGERGEKGDK 815
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 24 STVISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
S +SG G G GLPGE PG G G+ G+ G+PGKDG PG G PG G
Sbjct: 660 SPGVSGPRGASGAPGLPGERGPPGERGPEGQMGLPGMPGKDGAPGLQGPPGIRGQTGMPG 719
Query: 81 AMGADTKSFSDGVLPSVQRAIAAGLVIYRFH 111
G +S ++ S R I ++ R
Sbjct: 720 VQGPPGRS----IIESEIREICTSVLRERLK 746
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 13 VHDRRDIGRAISTVIS-GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+ D + T+ S G G G G PG PG G PG G +G G G+PGKDG PG
Sbjct: 645 ISDMLSTNNVLETIGSPGVSGPRGASGAPGLPGERGPPGERGPEGQMGLPGMPGKDGAPG 704
Query: 72 TNG 74
G
Sbjct: 705 LQG 707
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
G GL G GLPGEPG PG G++G GK GLPG DG
Sbjct: 547 GPPGLQGSPGLPGEPG---APGPRGIEGAIGKPGLPGLDG 583
>gi|321464257|gb|EFX75266.1| hypothetical protein DAPPUDRAFT_323553 [Daphnia pulex]
Length = 308
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 11 LEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIP 70
+E D +D G+ + V G G +G+DG G G DG PG G G PGKDG G DG+
Sbjct: 140 IEEKDGKD-GQDGAPVYPGLAGTNGKDGKDGRDGQDGAPGPLGPQGAPGKDGKNGTDGLF 198
Query: 71 GTNGTKTDHYAMGA 84
+GT + GA
Sbjct: 199 EQDGTSGQDWQTGA 212
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 27 ISGRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGK---DGLPGKDGIPGTNGTKT 77
I + G DG+DG P PGL DG GR+G DG PG G PGKDG GT+G
Sbjct: 140 IEEKDGKDGQDGAPVYPGLAGTNGKDGKDGRDGQDGAPGPLGPQGAPGKDGKNGTDGLFE 199
Query: 78 DHYAMGADTKSFSDGVL 94
G D ++ + G +
Sbjct: 200 QDGTSGQDWQTGAQGAV 216
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 6 GMLQVLEVHDRRDIGRAISTVISGRI--------GLDGRDGLP---GEPGLDGIPGRNGM 54
G + L+ DRR R + V+ R G DGRDG+ G+ G DG P G+
Sbjct: 100 GSMGQLDCKDRRAF-REFTEVLVCRAFKRRVGADGKDGRDGIEEKDGKDGQDGAPVYPGL 158
Query: 55 DGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGVL 94
G GKDG G+DG G G A G D K+ +DG+
Sbjct: 159 AGTNGKDGKDGRDGQDGAPGPLGPQGAPGKDGKNGTDGLF 198
>gi|390457537|ref|XP_003731959.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-2(IV) chain-like
[Callithrix jacchus]
Length = 1824
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 32/60 (53%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D D G A G G G DG+PG PGL G G GMDG G GL G+ GIPG+ G
Sbjct: 1000 DTGDAGLAGERGRPGSPGFKGIDGMPGAPGLKGERGSPGMDGFQGMPGLKGRPGIPGSKG 1059
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 30 RIGL---DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
RIGL G DG PG PGL G PG G+ G+ GLPG G PG+ G
Sbjct: 1280 RIGLPGGKGDDGWPGAPGLPGFPGPRGISGL---HGLPGTKGFPGSPGA 1325
>gi|326670432|ref|XP_700280.4| PREDICTED: collagen alpha-1(I) chain-like [Danio rerio]
Length = 357
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G+ G G+PG PG G G G+ G+PG DG PG+DG G G
Sbjct: 187 IKGERGMVGFPGIPGAPGRKGDSGERGLQGLPGNDGSPGQDGRTGPQG 234
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G+ G G+ G PG+ G PGR G G G GLPG DG PG +G
Sbjct: 182 TGDPGIKGERGMVGFPGIPGAPGRKGDSGERGLQGLPGNDGSPGQDG 228
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GR G GE GL G+PG DG PG+DG G G+PG +G++
Sbjct: 201 GAPGRKGDSGERGLQGLPGN---DGSPGQDGRTGPQGMPGPSGSQ 242
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPG---RNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G G GL G PG DG PG R G G+PG G G G PG G + D
Sbjct: 204 GRKGDSGERGLQGLPGNDGSPGQDGRTGPQGMPGPSGSQGVKGDPGLKGERGD 256
>gi|297304551|ref|XP_002806396.1| PREDICTED: hypothetical protein LOC703814 isoform 2 [Macaca
mulatta]
Length = 1685
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 27 ISGRIGLDGRDGLPG---------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G+ GLPG PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1280 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1336
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG G+ G G GLPG G PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKG 1116
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G GIPG+ G +
Sbjct: 1298 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGIPGSAGPE 1347
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G PG+PGL G+PG G G PG G PG+ PG NG K D
Sbjct: 1280 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGR---PGLNGMKGD 1322
>gi|241623474|ref|XP_002409121.1| collagen alpha chain, type IV, putative [Ixodes scapularis]
gi|215503116|gb|EEC12610.1| collagen alpha chain, type IV, putative [Ixodes scapularis]
Length = 1395
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 12 EVHDRRDIGRAISTVISGRIG---LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
E +R D G S G G L G DGLPG G DGIPGR G G PG+DG P G
Sbjct: 531 EKGERGDKGSRGSDGFPGTPGDKGLPGDDGLPGARGRDGIPGRQGQPGTPGRDGFP---G 587
Query: 69 IPG 71
IPG
Sbjct: 588 IPG 590
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G DG PG PG G+PG +G+ G G+DG+PG+ G PGT G
Sbjct: 536 GDKGSRGSDGFPGTPGDKGLPGDDGLPGARGRDGIPGRQGQPGTPG 581
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 28/47 (59%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR G+ G GLPG+ G G+PG G G PG DG PG G PG GT
Sbjct: 824 GRPGIPGPAGLPGDDGFPGLPGLKGALGEPGVDGFPGAPGRPGPKGT 870
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 8 LQVLEVH--DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG 65
L EV DR + GR I G GL G DG PG PGL G G G+DG PG G PG
Sbjct: 810 LPTSEVSKGDRGEPGRP---GIPGPAGLPGDDGFPGLPGLKGALGEPGVDGFPGAPGRPG 866
Query: 66 KDGI 69
G
Sbjct: 867 PKGT 870
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 18/69 (26%)
Query: 28 SGRIGLDGRDGLPG------------------EPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
G+ G GRDG PG +PGLDG PG +G G PG G PG G
Sbjct: 574 QGQPGTPGRDGFPGIPGGFFVLYEKGEIGDQGQPGLDGFPGESGFPGFPGLKGFPGLPGR 633
Query: 70 PGTNGTKTD 78
PG G + +
Sbjct: 634 PGAAGERGN 642
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 26 VISGRIGLDGRDGLPG------EPGLDGIP---------GRNGMDGIPGKDGLPGKDGIP 70
V R+G G DGLPG EPG G+P G G GIPG GLPG DG P
Sbjct: 782 VSQDRLGPLGPDGLPGLKGELGEPGFPGLPTSEVSKGDRGEPGRPGIPGPAGLPGDDGFP 841
Query: 71 GTNGTK 76
G G K
Sbjct: 842 GLPGLK 847
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Query: 29 GRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDG---LPGKDGIPGTNG 74
G G DG G PG+ PG DG+PG G DGIPG+ G PG+DG PG G
Sbjct: 539 GSRGSDGFPGTPGDKGLPGDDGLPGARGRDGIPGRQGQPGTPGRDGFPGIPG 590
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 29/60 (48%), Gaps = 12/60 (20%)
Query: 29 GRIGLDGRDGLPGEPGLDGIP------------GRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GR G+ GR G PG PG DG P G G G PG DG PG+ G PG G K
Sbjct: 566 GRDGIPGRQGQPGTPGRDGFPGIPGGFFVLYEKGEIGDQGQPGLDGFPGESGFPGFPGLK 625
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 24/37 (64%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG 65
G G+ G +G PG PG DG PG G+ GI G+DG PG
Sbjct: 727 GPKGISGEEGFPGAPGFDGRPGVPGLPGIEGEDGRPG 763
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 28 SGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
+G+ G G G PGE PG G+ G G DG+PG G G G PG G + D M A
Sbjct: 1015 NGQYGPKGERGYPGEIGQPGFPGVKGERGDDGLPGIPGKQGAAGFPGVKGERGDRAPMVA 1074
Query: 85 DTK 87
+ +
Sbjct: 1075 ELR 1077
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 24/36 (66%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
L G G PGE GLDG GR G G+PG+DG PG+ G
Sbjct: 1078 LKGEQGDPGENGLDGPRGRPGEVGLPGRDGFPGESG 1113
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 15 DRRDIGRAISTV--ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGI 69
DR D G + + G G G G G G DG PG G G+PG DGLP G+DGI
Sbjct: 511 DRGDAGPGTYGLPGLPGYAGEKGERGDKGSRGSDGFPGTPGDKGLPGDDGLPGARGRDGI 570
Query: 70 PGTNG 74
PG G
Sbjct: 571 PGRQG 575
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 5 QGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLD------GIPGRNGMDGIP 58
+G+ QV V G GR G DG DG PG G D GIPG+ G G
Sbjct: 153 RGVRQVGPVGPMGLPGEQGEPGAPGRPGRDGEDGFPGPRGDDCGTCPPGIPGKRGDRGED 212
Query: 59 GKDGLPGKDGIPGTNG 74
G+ G PG G PGT G
Sbjct: 213 GRPGFPGSMGPPGTKG 228
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G GR+GLPG E G GI G G G PG DG PG G+PG G
Sbjct: 709 GQSGYPGRNGLPGFKGEMGPKGISGEEGFPGAPGFDGRPGVPGLPGIEG 757
>gi|193202649|ref|NP_491822.2| Protein COL-58 [Caenorhabditis elegans]
gi|373218914|emb|CCD64200.1| Protein COL-58 [Caenorhabditis elegans]
Length = 289
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G PGLDGIPGR+G G PG+ GLPG G PG +G
Sbjct: 166 GAPGLDGIPGRHGTPGYPGEPGLPGPVGDPGFDG 199
>gi|395854626|ref|XP_003799783.1| PREDICTED: collagen alpha-5(IV) chain isoform 2 [Otolemur
garnettii]
Length = 1685
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGEIGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G G G G PG PGL G+PG G DG+P GLPG G PG
Sbjct: 552 TFPGMKGDKGESGAPGAPGLPGLPGTPGQDGLP---GLPGPKGEPG 594
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G G GLPG PG+ G G G+ G PG+ GL G+ G+PG +G + +
Sbjct: 959 LVGSKGEKGEPGLPGIPGVPGPKGDQGLPGDPGQPGLSGQPGLPGPSGPEGN 1010
>gi|268551945|ref|XP_002633954.1| C. briggsae CBR-COL-122 protein [Caenorhabditis briggsae]
Length = 300
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGI---PGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GRA G GL G+DG PG+PG G G G DG PG+ G+ G DG PG G
Sbjct: 223 GRAGPRGPRGPAGLKGKDGAPGQPGQPGPRGGAGEPGQDGAPGQPGVAGADGTPGEKGIC 282
Query: 77 TDHYAM 82
+ A+
Sbjct: 283 PKYCAI 288
>gi|423278781|ref|ZP_17257695.1| hypothetical protein HMPREF1203_01912 [Bacteroides fragilis HMW
610]
gi|404585773|gb|EKA90377.1| hypothetical protein HMPREF1203_01912 [Bacteroides fragilis HMW
610]
Length = 716
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 26/43 (60%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G DG DG G G DG G NG DG G DG GKDG+ GT+G
Sbjct: 132 GEDGADGQNGSNGTDGTDGSNGNDGQDGADGTDGKDGVDGTDG 174
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G DG +G G+ G DG G++G+DG G DG G +G GT+G+ + GAD
Sbjct: 104 NGNDGTDGSNGNDGQNGADGTDGKDGVDGEDGADGQNGSNGTDGTDGSNGNDGQDGADGT 163
Query: 88 SFSDGV 93
DGV
Sbjct: 164 DGKDGV 169
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
V +G +G G +G G G +G G+NG DG GKDG+ G+DG G NG+
Sbjct: 93 VKNGLVGNKGENGNDGTDGSNGNDGQNGADGTDGKDGVDGEDGADGQNGSN 143
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G G DG DG G G +G G +G DG+ G+DG G++G GT+GT
Sbjct: 102 GENGNDGTDGSNGNDGQNGADGTDGKDGVDGEDGADGQNGSNGTDGT 148
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G DG++G G G DG G +G DG G DG G DG G +G K
Sbjct: 130 VDGEDGADGQNGSNGTDGTDGSNGNDGQDGADGTDGKDGVDGTDGKDGVK 179
>gi|380786125|gb|AFE64938.1| collagen alpha-5(IV) chain isoform 1 precursor [Macaca mulatta]
Length = 1685
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G GIPG+ G +
Sbjct: 1298 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFSGMKGPSGIPGSAGPE 1347
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG G+ G G GLPG G PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKG 1116
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G PG+PGL G+PG G G PG G PG+ PG NG K D
Sbjct: 1280 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGR---PGLNGMKGD 1322
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL------PGKDGIPGTNGTK 76
I G G G+ GLPG PGL G G G+ G PG+ GL PG G+PG +G K
Sbjct: 1280 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFSGMK 1335
>gi|351694807|gb|EHA97725.1| Macrophage receptor MARCO [Heterocephalus glaber]
Length = 506
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
I G +GL G G PG PG +G+ G G GI G+ G G+ G+PG+ G K + +G
Sbjct: 313 IPGTVGLTGAPGNPGSPGREGMKGSKGDTGIQGQKGTKGESGVPGSAGPKGEKGTLG 369
>gi|312073402|ref|XP_003139504.1| procollagen [Loa loa]
Length = 1783
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G GL G G+PG+ GL G+PG+ G G PG+ GLPG G+PG G
Sbjct: 1140 LKGDAGLPGAPGIPGQIGLPGLPGQKGEAGFPGQSGLPGAPGLPGKMGV 1188
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ + G GL G G GEPGL G+PG G DG+PG G+ G GIPG G
Sbjct: 1325 ASGVKGEAGLPGIPGAKGEPGLPGLPGLRGKDGLPGAPGIAGLPGIPGAKG 1375
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI---PGTNGTKTDHYAMGAD 85
G G+ G GLPG PG G PG G+ G+ GKDGLPG GI PG G K D GA
Sbjct: 1324 GASGVKGEAGLPGIPGAKGEPGLPGLPGLRGKDGLPGAPGIAGLPGIPGAKGDAGLPGAP 1383
Query: 86 TKSFSDGVL 94
G+L
Sbjct: 1384 GVPGQPGLL 1392
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKDGIPGTNGTKTD 78
G GL G G+PG+PGL G+ G G+ G P G+ G+PGK G+PG G K D
Sbjct: 1375 GDAGLPGAPGVPGQPGLLGLKGEPGLPGFPGPKGEAGIPGKPGLPGLPGLKGD 1427
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNGTKTD 78
I G G GR G PG+ GLDG PG G+ G +PG G+PG+ G+PG G K +
Sbjct: 1113 IPGLPGKQGRQGAPGQKGLDGAPGFPGLKGDAGLPGAPGIPGQIGLPGLPGQKGE 1167
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 29/53 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
G G G GLPG PG DG+PG G+ G G G PGKDG PG G K A
Sbjct: 1238 GAPGYPGIKGLPGFPGKDGLPGLPGIKGEVGMQGAPGKDGFPGIPGQKGASIA 1290
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 30/52 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G GL G G GE GL G+PG GM G G G PGKDG+PG G K +
Sbjct: 995 AGLPGLPGAPGAKGERGLAGLPGLPGMKGASGYPGAPGKDGLPGIPGAKGER 1046
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 27 ISGRIGLDGRDGLPGEP---GLDGIPGRNGMDGIPGKDGLPGKDGI 69
+ G GL G+DGLPG P GL GIPG G G+PG G+PG+ G+
Sbjct: 1346 LPGLPGLRGKDGLPGAPGIAGLPGIPGAKGDAGLPGAPGVPGQPGL 1391
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRN------GMDGIPGKDGLPGKDGIPGTN 73
G A ++ + G+ GL G G+ GEPGL G PG + G+ GIPG G PG G+PG
Sbjct: 1294 GNAGASGLPGKDGLPGLPGMKGEPGLSGYPGASGVKGEAGLPGIPGAKGEPGLPGLPGLR 1353
Query: 74 G 74
G
Sbjct: 1354 G 1354
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ D G + + G+ GL G L GEPGL G PG G GIPGK GLPG G+ G G
Sbjct: 1374 KGDAGLPGAPGVPGQPGLLG---LKGEPGLPGFPGPKGEAGIPGKPGLPGLPGLKGDCGV 1430
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G GLPGE G+ G+PG+ G G PG+ GL DG PG G K D GA
Sbjct: 1103 GAPGLPGEKGIPGLPGKQGRQGAPGQKGL---DGAPGFPGLKGDAGLPGA 1149
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---------GKDGIPGTNGTKTD 78
+G G G++G+PG PGL G G GM G PG DG P GK G+PG G K +
Sbjct: 774 AGYPGAPGKEGVPGLPGLPGPKGSEGMPGPPGIDGQPGLPGPKGNAGKPGLPGLQGPKGE 833
Query: 79 H 79
Sbjct: 834 R 834
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G+ G G PG+ G DG+PG G+ G+ G+ GLPG G+PG G
Sbjct: 927 GPPGIAGAPGFPGQKGEDGLPGLPGVAGLKGEAGLPGAPGLPGAAG 972
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G GL G GLPG +PG G+ G+ G+ GIPG G G G+PG G K +
Sbjct: 955 LKGEAGLPGAPGLPGAAGQPGFPGLKGQAGLPGIPGAKGDAGLPGLPGAPGAKGER 1010
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G GL G PGL G+ G +G G PGKDGLP GIPG G +
Sbjct: 1000 LPGAPGAKGERGLAGLPGLPGMKGASGYPGAPGKDGLP---GIPGAKGER 1046
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G GL G+DGLPG L G+ G G+ G PG G+ G+ G+PG G K +
Sbjct: 1296 AGASGLPGKDGLPG---LPGMKGEPGLSGYPGASGVKGEAGLPGIPGAKGE 1343
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGK 66
+ G G G G+PG+PGL G+PG G + G+PG+DG PGK
Sbjct: 1400 LPGFPGPKGEAGIPGKPGLPGLPGLKGDCGVPGVPGRDGAPGK 1442
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
S + G G+DG+ GLPG G G PG G+ G G+ G PG G+PG G
Sbjct: 797 SEGMPGPPGIDGQPGLPGPKGNAGKPGLPGLQGPKGERGYPGSPGLPGAKG 847
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 17/69 (24%)
Query: 27 ISGRIGLDG---RDGLPGEPG--------------LDGIPGRNGMDGIPGKDGLPGKDGI 69
I G +G+ G +DG PG PG G+PG++G+ G+PG G PG G
Sbjct: 1263 IKGEVGMQGAPGKDGFPGIPGQKGASIAGPKGNAGASGLPGKDGLPGLPGMKGEPGLSGY 1322
Query: 70 PGTNGTKTD 78
PG +G K +
Sbjct: 1323 PGASGVKGE 1331
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT---NGTKTDHYAMG 83
+ G G+ G G PG PG DG+PG G G G +GLPG+ G PG +G K D G
Sbjct: 1015 LPGLPGMKGASGYPGAPGKDGLPGIPGAKGERGFNGLPGEKGEPGPAARDGAKGDAGLPG 1074
Query: 84 A 84
A
Sbjct: 1075 A 1075
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 9/55 (16%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKDG---LPGKDGIPGTNG 74
G+ GLDG G PG PG GIPG+ G+ G+PG+ G PG+ G+PG G
Sbjct: 1127 GQKGLDGAPGFPGLKGDAGLPGAPGIPGQIGLPGLPGQKGEAGFPGQSGLPGAPG 1181
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G GL G GLPG PGL G G+ G G+ G+ GLP GIPG G
Sbjct: 949 LPGVAGLKGEAGLPGAPGLPGAAGQPGFPGLKGQAGLP---GIPGAKG 993
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 30 RIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G+DGLPG PG G G G PGK+G+PG G+PG G++
Sbjct: 755 KPGPPGKDGLPGLPGPKG---DAGYPGAPGKEGVPGLPGLPGPKGSE 798
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 22 AISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNG 74
A S + G G DG GLPG G G PG G +G+PG GLP G +G+PG G
Sbjct: 750 AESQLKPGPPGKDGLPGLPGPKGDAGYPGAPGKEGVPGLPGLPGPKGSEGMPGPPG 805
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 28/50 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G GL G GL GE GL G PG G G PG GL G+ G+PG G K D
Sbjct: 945 GLPGLPGVAGLKGEAGLPGAPGLPGAAGQPGFPGLKGQAGLPGIPGAKGD 994
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 28/50 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I+G G G+ G G PGL G+ G G G+PG GLPG G PG G K
Sbjct: 931 IAGAPGFPGQKGEDGLPGLPGVAGLKGEAGLPGAPGLPGAAGQPGFPGLK 980
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G GL G GLPG PG+ G+PG+ G G PG G G G PG G
Sbjct: 886 LPGVSGLKGEAGLPGAPGIAGLPGQKGDAGFPGLPGAEGPVGPPGIAGA 934
>gi|156388143|ref|XP_001634561.1| predicted protein [Nematostella vectensis]
gi|156221645|gb|EDO42498.1| predicted protein [Nematostella vectensis]
Length = 410
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 36/67 (53%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G GL G PGL G PG+ G GIPG++G G G PG G+ + G D
Sbjct: 162 VPGFPGLKGEIGLIGPPGLAGSPGQTGAPGIPGRNGTAGPPGFPGLKGSPGERGLSGIDG 221
Query: 87 KSFSDGV 93
S+GV
Sbjct: 222 PPGSEGV 228
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 39/83 (46%), Gaps = 15/83 (18%)
Query: 13 VHDRRDIGRAISTVI---------SGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGK 60
D+ D GR S+ SG G G G+ GE PGLDG PG++G G PG
Sbjct: 267 TGDKGDPGRKGSSGPVGSPGKKGESGATGAKGTTGVKGESGTPGLDGSPGKDGPTGSPGD 326
Query: 61 DGLPGKDGIPGTNGTKTDHYAMG 83
PG G PG NG K + A G
Sbjct: 327 ---PGSKGFPGNNGGKGERGAQG 346
>gi|403273052|ref|XP_003928340.1| PREDICTED: collagen alpha-1(IV) chain [Saimiri boliviensis
boliviensis]
Length = 1731
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G +G G GLPGE PGLDGIPG G G+PG + G PG DGIPG+
Sbjct: 1165 GSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 1224
Query: 74 GTKTD 78
G K +
Sbjct: 1225 GEKGE 1229
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G K DH
Sbjct: 916 TGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPVGSPGLPGEKGDH 970
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 37/84 (44%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G G G PG G+PG G G+PG DG+PG G G GT G
Sbjct: 1154 VPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKG 1213
Query: 87 KSFSDGVLPSVQRAIAAGLVIYRF 110
+ SDG+ S GL F
Sbjct: 1214 EPGSDGIPGSAGEKGEPGLPGRGF 1237
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 27 ISGRIGLDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
++G G+ G G PG PGLD G+PG G G+PG G G G+PG G+
Sbjct: 880 LAGPPGIKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQGTPGVPGFPGS 939
Query: 76 KTDHYAMGADTKSFSDGVL 94
K + MG + S G +
Sbjct: 940 KGEMGVMGTPGQPGSPGPV 958
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG------IPGT 72
IG S G G+ G+DG G+PG G G G+ GIPG GLPG G +PGT
Sbjct: 1024 IGEKGSRGDPGSPGVPGKDGQAGQPGQPGPKGDPGISGIPGSPGLPGPKGSVGGMGLPGT 1083
Query: 73 NGTK 76
G K
Sbjct: 1084 PGEK 1087
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G+ G+PG G PG G PG G + Y
Sbjct: 551 GFPGQPGAKGDRGLPGRDGLAGVPGPQGTPGLIGQPGAKGEPGEIY 596
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 25/43 (58%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G GL G PG G PG G+ G G GLPG DGIPG G
Sbjct: 1153 GVPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKG 1195
>gi|28703797|gb|AAH47305.1| COL4A1 protein, partial [Homo sapiens]
Length = 1075
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G +G G GLPGE PGLDGIPG G G+PG + G PG DGIPG+
Sbjct: 509 GSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 568
Query: 74 GTKTD 78
G K +
Sbjct: 569 GEKGE 573
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G K DH
Sbjct: 260 TGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDH 314
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 37/84 (44%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G G G PG G+PG G G+PG DG+PG G G GT G
Sbjct: 498 MPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKG 557
Query: 87 KSFSDGVLPSVQRAIAAGLVIYRF 110
+ SDG+ S GL F
Sbjct: 558 EPGSDGIPGSAGEKGEPGLPGRGF 581
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G GIPG G+K +
Sbjct: 230 IKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGV 289
Query: 82 MGADTKSFSDGVL 94
MG + S G +
Sbjct: 290 MGTPGQPGSPGPV 302
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 25/43 (58%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G GL G PG G PG G+ G G GLPG DGIPG G
Sbjct: 497 GMPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKG 539
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG------IPGT 72
IG S G G+ G+DG G+PG G G G+ G PG GLPG G +PGT
Sbjct: 368 IGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGT 427
Query: 73 NGTK 76
G K
Sbjct: 428 PGEK 431
>gi|390463952|ref|XP_003733139.1| PREDICTED: LOW QUALITY PROTEIN: complement C1q and tumor necrosis
factor-related protein 9A-like [Callithrix jacchus]
Length = 333
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG---LPGKDGIPGTNGT 75
IG + S G G+PG PG +G+PGR+G DG G G PG G PG +GT
Sbjct: 10 IGICTGGINSQDTCRQGHPGIPGNPGHNGLPGRDGRDGXKGDKGDAGEPGHPGSPGKDGT 69
Query: 76 KTDHYAMGADTKSFSDGV 93
+ GAD K + G+
Sbjct: 70 SGEKGERGADGKVEAKGI 87
>gi|350399883|ref|XP_003485670.1| PREDICTED: hypothetical protein LOC100743696 [Bombus impatiens]
Length = 2763
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 28/45 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+G GL G GLPGE G+ G+PG G DG G G PG+DG PG
Sbjct: 2415 FTGLQGLPGPTGLPGEKGIPGLPGLPGKDGESGPRGSPGRDGSPG 2459
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEP---------GLDGIPGRNGMDGIPGKDGLPGK 66
R + GR SG G G+DG+PGE G G PG G GIPG G+PG
Sbjct: 1666 RGETGRPGQPGESGPQGPQGKDGIPGEKGSTGAAGLVGAPGFPGARGQPGIPGNPGVPGA 1725
Query: 67 DGIPGTNGTK 76
G+PG +G +
Sbjct: 1726 KGMPGLSGER 1735
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GL G G+PG PGL G G +G G PG+DG PG G+ G G K
Sbjct: 2421 LPGPTGLPGEKGIPGLPGLPGKDGESGPRGSPGRDGSPGPIGLTGNPGPK 2470
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEP---------GLDGIPGRN---GMDGIPGKDGLPG 65
D GR S + G GL GR G PG+P G DG PG G+ G+PG GLPG
Sbjct: 1821 DPGRPGSPGLQGTRGLMGRPGAPGKPGNPGDRGIQGADGKPGEQGPAGLQGLPGPIGLPG 1880
Query: 66 KDGIPGTNG 74
+ G PG G
Sbjct: 1881 EKGYPGEPG 1889
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G G G GLPG GL G G G+ G+PGKDG G G PG +G+
Sbjct: 2410 KGHRGFTGLQGLPGPTGLPGEKGIPGLPGLPGKDGESGPRGSPGRDGS 2457
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G+ G G DG PG PG G G G+ G+PG G+ G G PG +G K +
Sbjct: 1524 LPGKDGNTGEDGEPGPPGSVGPVGPRGLPGMPGLPGVKGHRGFPGLDGAKGEQ 1576
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGR---NGMDGIPGKDGLPGKDGIPGTNG 74
G +GL+G G GE G G G G+ G+PG GLPG+ GIPG G
Sbjct: 2390 GPVGLEGPKGDRGEEGQKGAKGHRGFTGLQGLPGPTGLPGEKGIPGLPG 2438
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 24/43 (55%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G G PG PGL G G G G PGK G PG GI G +G
Sbjct: 1817 GANGDPGRPGSPGLQGTRGLMGRPGAPGKPGNPGDRGIQGADG 1859
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 25/46 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G GL G G PG GL G+PG G G PG G G G+PG+ G
Sbjct: 2105 GPQGLQGLQGFPGPQGLIGLPGLKGDRGYPGLKGDQGNPGLPGSPG 2150
>gi|5921191|sp|Q05722.2|CO9A1_MOUSE RecName: Full=Collagen alpha-1(IX) chain; Flags: Precursor
gi|987667|dbj|BAA04463.1| alpha 1 type IX collagen chain [Mus musculus]
Length = 921
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 33/60 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G+DGRDG+PG PG G G+ G G G GLPG GIPG G + GA K
Sbjct: 537 TGLPGVDGRDGIPGMPGTKGEAGKPGPPGDVGLQGLPGVPGIPGAKGVAGEKGNTGAPGK 596
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 25/46 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +GL G G+PG PG G+ G G G PGK G G G PG G
Sbjct: 565 GDVGLQGLPGVPGIPGAKGVAGEKGNTGAPGKPGQLGSSGKPGQQG 610
>gi|403284772|ref|XP_003933729.1| PREDICTED: collagen alpha-1(XXII) chain [Saimiri boliviensis
boliviensis]
Length = 1585
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDHYAMG 83
G G G DGLPG+PGL G G G+ G PG+ GLPG G PG G K D G
Sbjct: 745 TKGEPGERGEDGLPGKPGLRGEVGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKG 804
>gi|183980002|ref|NP_001103810.2| collagen, type IV [Bombyx mori]
gi|183397303|gb|ABW72726.2| type IV collagen [Bombyx mori]
gi|183397305|gb|ABW72727.2| type IV collagen [Bombyx mori]
Length = 819
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G +G+PG PG +G PG G G G G PG G+PG G + + +G
Sbjct: 516 LPGNDGLPGVNGVPGRPGNNGPPGEKGDRGFTGARGFPGPRGLPGIQGMEGERGEIGMTG 575
Query: 87 KSFSDGV--LPSVQRAIAAGLVIYR 109
+S G P V + G+++ R
Sbjct: 576 QSGLPGAPGAPCVSQDFLTGILLVR 600
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGR---NGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
I G GL G G G PGL G PG+ G+ G+PG+ G PG G+PG G K D
Sbjct: 337 TIKGEKGLPGTHGKHGRPGLPGAPGQKGDQGLPGLPGQLGRPGIPGLPGEKGQKGDQ 393
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
GR G+ G DG PG+PG G+PG G G G+ G PG+DG+ G G + A G
Sbjct: 190 GRPGVPGIDGAPGQPGDVGLPGITGEKGDKGELGFPGRDGLGGLKGDRGQPGAEG 244
Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 27 ISGRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
+SG IG G G G PGL G PGR G+ GI G G PG G+PG G K D
Sbjct: 161 LSGPIGEKGNRGPQGVPGLKGNLGISGEPGRPGVPGIDGAPGQPGDVGLPGITGEKGDKG 220
Query: 81 AMG 83
+G
Sbjct: 221 ELG 223
>gi|424664812|ref|ZP_18101848.1| hypothetical protein HMPREF1205_00687 [Bacteroides fragilis HMW
616]
gi|404575345|gb|EKA80088.1| hypothetical protein HMPREF1205_00687 [Bacteroides fragilis HMW
616]
Length = 716
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G DG DG+ GE G DG G NG DG G + G+DG+ GT+G
Sbjct: 119 NGADGTDGNDGVDGEDGADGQNGSNGTDGTDGSNANDGQDGVDGTDG 165
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
V +G +G G +G G G +G G+NG DG G DG+ G+DG G NG+ G++
Sbjct: 93 VKNGLVGNKGENGNDGTDGSNGNDGQNGADGTDGNDGVDGEDGADGQNGSNGTDGTDGSN 152
Query: 86 TKSFSDGV 93
DGV
Sbjct: 153 ANDGQDGV 160
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G DG +G G+ G DG G +G+DG G DG G +G GT+G+ + G D
Sbjct: 104 NGNDGTDGSNGNDGQNGADGTDGNDGVDGEDGADGQNGSNGTDGTDGSNANDGQDGVDGT 163
Query: 88 SFSDGV 93
DGV
Sbjct: 164 DGKDGV 169
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G G DG + G+ G+DG G++G+DG GKDG+ G DG G K D
Sbjct: 143 NGTDGTDGSNANDGQDGVDGTDGKDGVDGTDGKDGVKGPDGDTPLMGAKQD 193
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G DG++G G G DG +G DG+ G DG G DG G +G K
Sbjct: 130 VDGEDGADGQNGSNGTDGTDGSNANDGQDGVDGTDGKDGVDGTDGKDGVK 179
>gi|395528131|ref|XP_003766185.1| PREDICTED: collagen alpha-4(IV) chain [Sarcophilus harrisii]
Length = 1484
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG--IPGTN 73
+ + G + I GR G G DG PG PG +G+PG+NG+ G G+ GLPG G IPG
Sbjct: 548 KGEKGDMVIARIKGRKGEKGHDGPPGYPGQEGVPGQNGLYGKRGEPGLPGSRGGAIPGAE 607
Query: 74 GT 75
G+
Sbjct: 608 GS 609
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 28/51 (54%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG 65
D+ DI G +G GR G PGE G G PG G+ G PG+DGLPG
Sbjct: 955 DQGDISIVSRKGEKGDLGPPGRYGFPGEKGDKGSPGIPGIKGFPGRDGLPG 1005
>gi|170037656|ref|XP_001846672.1| collagen IV alpha 1 chain [Culex quinquefasciatus]
gi|167880956|gb|EDS44339.1| collagen IV alpha 1 chain [Culex quinquefasciatus]
Length = 1674
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G +G G PG PG +G+PG G GIPG DG G DG+PG G K +
Sbjct: 120 VKGDRGREGLPGYPGVPGTNGLPGVAGAPGIPGVDGCNGTDGLPGLPGLKGE 171
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G G PG PG+DG G +G+ G+PG G PG G PG G K + +
Sbjct: 135 VPGTNGLPGVAGAPGIPGVDGCNGTDGLPGLPGLKGEPGPRGYPGIRGDKGEKGEGAREP 194
Query: 87 KSFSDG 92
++++ G
Sbjct: 195 ENYNKG 200
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD-----GLPGKDGIPGTNGTKTDH-YAM 82
G G G G PGEPG+DG PG +G DG PGK G G G PG G K D YA
Sbjct: 620 GFTGPKGDKGRPGEPGIDGTPGASGRDGTPGKPGESIRGESGAKGNPGYPGLKGDKGYAG 679
Query: 83 GADTKSFSDGVLPSVQRAI 101
+ P+++ A+
Sbjct: 680 LKGEAGVCASIPPNLEAAV 698
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+ GR GL+G G+ GEPGL G GR G G G G PG DG+ G NG K D G
Sbjct: 975 VDGRPGLNGMVGIKGEPGLPGY-GRQGATGEKGDRGNPGLDGLAGLNGQKGDAGVTG 1030
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPG---RNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
V+ G IG G+ G G PG DG+ G R G+ G+PG GLPG G G G K D
Sbjct: 842 VVQGVIGWPGQKGDTGPPGNDGMKGFQGRKGVQGLPGAAGLPGLQGPKGERGEKGDKGEF 901
Query: 83 G 83
G
Sbjct: 902 G 902
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G G G G G GL GIPG GMDG PG +G PG G+ G G+K + +G
Sbjct: 1026 AGVTGFPGIKGDKGISGLPGIPGSPGMDGAPGPEGAPGLAGLNGEKGSKGEAGRIG 1081
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 21/78 (26%)
Query: 27 ISGRIGLDGRDGLPG------EPGLDGIPGRNGMDGIPGK---------------DGLPG 65
+ GR G +GRDG PG + GL G+ G GM G+PG +G PG
Sbjct: 1199 LPGRPGKNGRDGGPGPVGEKGDKGLPGLAGPQGMPGLPGPLGRQGEKGDRGDSGIEGRPG 1258
Query: 66 KDGIPGTNGTKTDHYAMG 83
KDG+PG G K + +G
Sbjct: 1259 KDGLPGPQGIKGERGFIG 1276
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 29 GRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GR GL G G+PG PG+ G PG G+DG G DGLPG G+ G G +
Sbjct: 125 GREGLPGYPGVPGTNGLPGVAGAPGIPGVDGCNGTDGLPGLPGLKGEPGPR 175
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 29/56 (51%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G G G GL G PGL G PG GM G G G PG +G+PG G K D GA
Sbjct: 893 GEKGDKGEFGLTGAPGLTGPPGPLGMKGDKGLMGPPGLEGLPGFGGEKGDRGFTGA 948
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 12 EVHDRRDIGRAISTV---ISGRIGLDGRDGLPGEPGLDG------IPGRNGMDGIPGKDG 62
E D+ +IG S + G G G DG PG PG G PG G+DG PG G
Sbjct: 495 ERGDKGEIGGRCSDCRPGMKGEKGERGYDGTPGRPGTPGPSGERGYPGEMGIDGSPGLRG 554
Query: 63 LPGKDGIPGTNG 74
PG+ G PG G
Sbjct: 555 APGQKGEPGLAG 566
Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKDGIPGTNG 74
G G G +GLPG G G PG G G+ G++GLPG G+PGTNG
Sbjct: 91 KGMQGFTGAEGLPGSKGSKGEPGPIGPLGVKGDRGREGLPGYPGVPGTNG 140
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G G G G PGE G+DG PG + G PG+ G PG GIPG +G + +
Sbjct: 530 GTPGPSGERGYPGEMGIDGSPG---LRGAPGQKGEPGLAGIPGADGERGES 577
Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
S G G G PG G+DG PG NGM GI G+ GLPG G G G K D G D
Sbjct: 958 SSEKGQKGEPGAPGLRGVDGRPGLNGMVGIKGEPGLPGY-GRQGATGEKGDRGNPGLD 1014
>gi|297710745|ref|XP_002832025.1| PREDICTED: collagen alpha-5(IV) chain isoform 1 [Pongo abelii]
Length = 1691
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 26 VISGRIGLDGRDGLPG---------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G+ GLPG PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1285 AIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1342
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
S + G + G G PG+PGL G+PG G G PG G PG+ PG NG K D
Sbjct: 1277 SPGLPGNGAIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGR---PGLNGMKGD 1328
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG G+ G G GLPG G PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKG 1116
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G G+PG+ G +
Sbjct: 1304 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPE 1353
>gi|313149000|ref|ZP_07811193.1| lipoprotein [Bacteroides fragilis 3_1_12]
gi|313137767|gb|EFR55127.1| lipoprotein [Bacteroides fragilis 3_1_12]
Length = 716
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 26/43 (60%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G DG DG G G DG G NG DG G DG GKDG+ GT+G
Sbjct: 132 GEDGADGQNGSNGTDGTDGSNGNDGQDGADGTDGKDGVDGTDG 174
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G DG +G G+ G DG G++G+DG G DG G +G GT+G+ + GAD
Sbjct: 104 NGNDGTDGSNGNDGQNGADGTDGKDGVDGEDGADGQNGSNGTDGTDGSNGNDGQDGADGT 163
Query: 88 SFSDGV 93
DGV
Sbjct: 164 DGKDGV 169
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
V +G +G G +G G G +G G+NG DG GKDG+ G+DG G NG+
Sbjct: 93 VKNGLVGNKGENGNDGTDGSNGNDGQNGADGTDGKDGVDGEDGADGQNGSN 143
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G G DG DG G G +G G +G DG+ G+DG G++G GT+GT
Sbjct: 102 GENGNDGTDGSNGNDGQNGADGTDGKDGVDGEDGADGQNGSNGTDGT 148
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G DG++G G G DG G +G DG G DG G DG G +G K
Sbjct: 130 VDGEDGADGQNGSNGTDGTDGSNGNDGQDGADGTDGKDGVDGTDGKDGVK 179
>gi|40231528|gb|AAR83298.1| type XVIII collagen short variant [Homo sapiens]
Length = 1336
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 28/46 (60%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G PG PGL G G G DGIPG GLPG++GI G G K D + G
Sbjct: 642 GDPGVPGLPGAKGEVGADGIPGFPGLPGREGIAGPQGPKGDRGSRG 687
>gi|2920537|gb|AAC39659.1| type XVIII collagen [Homo sapiens]
Length = 1336
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 28/46 (60%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G PG PGL G G G DGIPG GLPG++GI G G K D + G
Sbjct: 642 GDPGVPGLPGAKGEVGADGIPGFPGLPGREGIAGPQGPKGDRGSRG 687
>gi|227522|prf||1705298A collagen alpha1(IV)
Length = 1529
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G G +G DG PG PG G PG G DG PG G+PG+DG+ G G + +H
Sbjct: 914 AGAPGQNGMDGYPGAPGDQGYPGSPGQDGYPGPSGIPGEDGLVGFPGLRGEH 965
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 20 GRAISTVISGRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR + I G+ GL+G DG PG PG G PG+ G +G G G+PG++G+PG G
Sbjct: 1121 GRQGNDGIPGQPGLEGECGEDGFPGSPGQPGYPGQQGREGEKGYPGIPGENGLPGLRG 1178
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK------------DGLPGKD 67
G A + + G G GRDGLPG PG G G NG DG PG+ DG G+D
Sbjct: 837 GDAGAAGLPGPDGYPGRDGLPGTPGYPGEAGMNGQDGAPGQPGSRGESGLVGIDGKKGRD 896
Query: 68 GIPGTNG 74
G PGT G
Sbjct: 897 GTPGTRG 903
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I+G GL G GLPG PG DGIPG+ G++G G+DG PG G PG G +
Sbjct: 1104 ITGMPGLKGESGLPGLPGRQGNDGIPGQPGLEGECGEDGFPGSPGQPGYPGQQ 1156
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 23 ISTVISGRIGLDGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPGKDGIPGTNG 74
I ++G+ G+DG GLPG+ G DG+PG G DG PG G PG DG+PG G
Sbjct: 724 IVNQVAGQPGVDGMPGLPGDRGADGLPGLPGPVGPDGYPGTPGEPGMDGLPGFPG 778
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 28/48 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G DGLPG G +GIPG NG DG PG GL G G G NG
Sbjct: 103 GHPGLQGLDGLPGLKGEEGIPGCNGTDGFPGMPGLAGPPGQSGQNGNP 150
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Query: 31 IGLDGRDGLPGE---------PGLDGIPGRNGMDGI---PGKDGLPGKDGIPGTNGTKTD 78
G G+DG PG PG DG PGR+G+ G PG+ G+ G+DG PG G++ +
Sbjct: 824 FGFPGQDGYPGPNGDAGAAGLPGPDGYPGRDGLPGTPGYPGEAGMNGQDGAPGQPGSRGE 883
Query: 79 HYAMGADTKSFSDGV 93
+G D K DG
Sbjct: 884 SGLVGIDGKKGRDGT 898
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 9/50 (18%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGT 72
GR G +G G PG+PG+ DG PGR+G+DG+PG+ PG++G+PG
Sbjct: 1390 GRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGR---PGREGLPGP 1436
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G G GLPG+ GL G PG+ G G PG DG PG G+ G G D GA +
Sbjct: 1451 NGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLSGMPGHGGDQGFQGAAGR 1510
Query: 88 SFSDGV 93
+ + G+
Sbjct: 1511 TGNPGL 1516
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 33/67 (49%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G DG G PG PG +G PG G+ G+PG+ G G +G PG G G D
Sbjct: 1355 LEGDCGEDGYPGAPGAPGSNGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDG 1414
Query: 87 KSFSDGV 93
DG+
Sbjct: 1415 FPGRDGL 1421
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGT 72
R + ++ + G G +G PGE G G+PG NG+ G PGK G PG DG PG
Sbjct: 1430 REGLPGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGP 1489
Query: 73 NG 74
G
Sbjct: 1490 PG 1491
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---------GIPGTNG 74
+ + G G G DG+PG+PGL+G G +G G PG+ G PG+ GIPG NG
Sbjct: 1113 ESGLPGLPGRQGNDGIPGQPGLEGECGEDGFPGSPGQPGYPGQQGREGEKGYPGIPGENG 1172
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 31/58 (53%), Gaps = 12/58 (20%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGI------------PGKDGLPGKDGIPGTNG 74
G G G+DG PG G G PG+NGMDG PG+DG PG GIPG +G
Sbjct: 897 GTPGTRGQDGGPGYSGEAGAPGQNGMDGYPGAPGDQGYPGSPGQDGYPGPSGIPGEDG 954
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G+ G DG G PG PG++G+P G++G G+DG PG G PG+NG +
Sbjct: 1331 LDGKRGHDGLPGAPGVPGVEGVP---GLEGDCGEDGYPGAPGAPGSNGYPGE 1379
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
G PGE GL G+ G+ G DG+PG G+PG +G+PG G + GA S+G
Sbjct: 1321 GYPGERGLPGLDGKRGHDGLPGAPGVPGVEGVPGLEGDCGEDGYPGAPGAPGSNGY 1376
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 35/69 (50%), Gaps = 20/69 (28%)
Query: 27 ISGRIGLDG------RDGLPG-----------EPGLDGIPGRNGMDGIPGKDGL---PGK 66
GR GLDG R+GLPG +PG +G PG G G+PG +GL PGK
Sbjct: 1415 FPGRDGLDGLPGRPGREGLPGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGK 1474
Query: 67 DGIPGTNGT 75
G PG GT
Sbjct: 1475 AGYPGAPGT 1483
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
G +G DG PG PGL G PG++G +G PG+ GL G G G N
Sbjct: 124 GCNGTDGFPGMPGLAGPPGQSGQNGNPGRPGLSGPPGEGGVN 165
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG 59
+ G +G DG G PGEPG+DG+PG G+ G PG
Sbjct: 752 LPGPVGPDGYPGTPGEPGMDGLPGFPGLHGEPG 784
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Query: 4 VQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI-----P 58
+ GM E DR + G G G GLPGEPG G PG +G+ G P
Sbjct: 412 IDGMPGYTEKGDRGE---------DGYPGFAGEPGLPGEPGDCGYPGEDGLPGYDIQGPP 462
Query: 59 GKDGLPGKDGIPGTNGTKTD 78
G DG G+DG PG G D
Sbjct: 463 GLDGQSGRDGFPGIPGDIGD 482
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 37/83 (44%), Gaps = 26/83 (31%)
Query: 29 GRIGLDGRDGLPGEPGLD-----------------------GIPGRN---GMDGIPGKDG 62
G +G +G DG GEPGLD G PG N G G+PG DG
Sbjct: 790 GEVGFNGIDGDCGEPGLDGYPGAPGAPGAPGETGFGFPGQDGYPGPNGDAGAAGLPGPDG 849
Query: 63 LPGKDGIPGTNGTKTDHYAMGAD 85
PG+DG+PGT G + G D
Sbjct: 850 YPGRDGLPGTPGYPGEAGMNGQD 872
>gi|206597434|ref|NP_001073182.2| collagen alpha-2(I) chain precursor [Gallus gallus]
Length = 1363
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 29/50 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+SG G G G G PG +G PG G DG PG DG PG+DG PG G +
Sbjct: 898 VSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDGPPGRDGAPGFKGER 947
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTK 76
GR ++G G G G PG PG GI G NG+DG G+ G P G+ G PG NGT
Sbjct: 150 GRPGERGVAGPQGARGFPGTPGLPGFKGIRGHNGLDGQKGQPGTPGTKGEPGAPGENGTP 209
Query: 77 TDHYAMG 83
A G
Sbjct: 210 GQPGARG 216
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
SG +G G +G PGE G DG PG DG PG+DG PG G G G A+GA
Sbjct: 908 SGPVGSPGPNGAPGEAGRDGNPGN---DGPPGRDGAPGFKGERGAPGNPGPSGALGA 961
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLD---GIPGRNGMDGIPGKDGLPGKDG 68
I G GLDG+ G PG PG G PG NG G PG GLPG+ G
Sbjct: 178 IRGHNGLDGQKGQPGTPGTKGEPGAPGENGTPGQPGARGLPGERG 222
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI------------PGTNGTKTDHYA 81
DG G PG PG G+ G G G PG GLPG GI PGT GTK + A
Sbjct: 143 DGHPGKPGRPGERGVAGPQGARGFPGTPGLPGFKGIRGHNGLDGQKGQPGTPGTKGEPGA 202
Query: 82 MGAD 85
G +
Sbjct: 203 PGEN 206
>gi|26326989|dbj|BAC27238.1| unnamed protein product [Mus musculus]
Length = 921
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 33/60 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G+DGRDG+PG PG G G+ G G G GLPG GIPG G + GA K
Sbjct: 537 TGLPGVDGRDGIPGMPGTKGEAGKPGPPGDVGLQGLPGVPGIPGAKGVAGEKGNTGAPGK 596
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 25/46 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +GL G G+PG PG G+ G G G PGK G G G PG G
Sbjct: 565 GDVGLQGLPGVPGIPGAKGVAGEKGNTGAPGKPGQLGSSGKPGQQG 610
>gi|395854624|ref|XP_003799782.1| PREDICTED: collagen alpha-5(IV) chain isoform 1 [Otolemur
garnettii]
Length = 1691
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGEIGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G G G G PG PGL G+PG G DG+P GLPG G PG
Sbjct: 552 TFPGMKGDKGESGAPGAPGLPGLPGTPGQDGLP---GLPGPKGEPG 594
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G G GLPG PG+ G G G+ G PG+ GL G+ G+PG +G + +
Sbjct: 959 LVGSKGEKGEPGLPGIPGVPGPKGDQGLPGDPGQPGLSGQPGLPGPSGPEGN 1010
>gi|170581983|ref|XP_001895927.1| collagen alpha 2(IV) chain precursor [Brugia malayi]
gi|158596987|gb|EDP35232.1| collagen alpha 2(IV) chain precursor, putative [Brugia malayi]
Length = 218
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 29/48 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I+G+ G G +GLPG G DGIPG G G PG G PG G+PG G
Sbjct: 45 IAGKPGTKGMEGLPGLVGHDGIPGSKGEQGNPGIQGKPGLTGLPGAKG 92
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 12/69 (17%)
Query: 19 IGRAISTVISGRIGLDGRDGL---------PGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
IGR + +G+ G G GL PG PG+ G PG GM+G+PG L G DGI
Sbjct: 10 IGRKVEKGETGKQGNKGEKGLQXSLGLKGNPGLPGIAGKPGTKGMEGLPG---LVGHDGI 66
Query: 70 PGTNGTKTD 78
PG+ G + +
Sbjct: 67 PGSKGEQGN 75
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ + G S + G GL G G PG G++G+PG G DGIPG G G GI G G
Sbjct: 24 NKGEKGLQXSLGLKGNPGLPGIAGKPGTKGMEGLPGLVGHDGIPGSKGEQGNPGIQGKPG 83
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 27/47 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G+ G+ GL G PG G G NG+ G PG+ G PG G+PG G
Sbjct: 73 QGNPGIQGKPGLTGLPGAKGKSGLNGLPGQPGRIGEPGLSGLPGLQG 119
>gi|353229950|emb|CCD76121.1| putative collagen alpha-1(V) chain precursor [Schistosoma mansoni]
Length = 1780
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G G G+ G+PGEPGLDG PG+ G+ G G+DGL G+PG G K +
Sbjct: 555 LQGPKGFRGQPGIPGEPGLDGSPGQKGLPGAQGRDGL---VGVPGQKGEKGER 604
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
+G+ G+ GLPG G+ G PG G DGIPG GLPG G+
Sbjct: 1045 VGVKGQKGLPGLKGIKGFPGEPGDDGIPGNKGLPGLAGV 1083
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMGAD 85
GR GL G G G+PG+ PG G+DG PG+ GLP G+DG+ G G K + G D
Sbjct: 551 GRPGLQGPKGFRGQPGI---PGEPGLDGSPGQKGLPGAQGRDGLVGVPGQKGEKGERGND 607
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGM--DGIPGKDGLPGKDGIPGTNGTKTDH 79
SG+ GL G G G+PG G PGR+G+ D G G+PG+DGI G G K D
Sbjct: 667 SGQPGLPGFSGTVGKPGRRGEPGRDGIVFDAQKGASGIPGRDGIKGEKGEKGDR 720
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G +G G PG PG GIPG G G+ G DGLPG +G G G + +G +
Sbjct: 841 TGEKGEEGTQGFPGPPGRKGIPGIKGEKGVRGADGLPGLNGPKGEIGDRGPKGEIGEPGE 900
Query: 88 SFS 90
+
Sbjct: 901 VYQ 903
>gi|333369517|ref|ZP_08461629.1| collagen triple helix repeat protein [Psychrobacter sp. 1501(2011)]
gi|332970902|gb|EGK09878.1| collagen triple helix repeat protein [Psychrobacter sp. 1501(2011)]
Length = 1721
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 26/48 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G +G DG G G DG G NG DG G+ G G +G GTNGT
Sbjct: 734 GDAGTNGTDGTNGTNGTDGTNGANGQDGAQGEQGDAGTNGTDGTNGTN 781
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 30/58 (51%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
+G+ G G G G G DG G NG DG G+DG G+ G GTNGT + G D
Sbjct: 757 NGQDGAQGEQGDAGTNGTDGTNGTNGTDGTNGQDGAQGEQGDAGTNGTDGTNGTNGTD 814
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 31/65 (47%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G +G DG G G DG G NG +G G+ G G +G GTNGT G D +
Sbjct: 797 GDAGTNGTDGTNGTNGTDGTNGTNGQNGAQGEQGDAGTNGTDGTNGTNGTDGTNGTDGTN 856
Query: 89 FSDGV 93
DG
Sbjct: 857 GQDGA 861
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 23/41 (56%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DG G G+ G +G G NG DG G DG G DG GTNG
Sbjct: 412 DGAQGEQGDAGTNGTDGTNGTDGTNGTDGTNGTDGTNGTNG 452
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G DG +G G G DG G NG DG G+ G G +G GT+GT
Sbjct: 428 GTNGTDGTNGTDGTNGTDGTNGTNGQDGAQGEQGDAGTNGTNGTDGTN 475
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 22/39 (56%)
Query: 36 RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+DG GE G G G NG DG G DG G DG GTNG
Sbjct: 291 QDGAQGEQGDAGTNGTNGTDGTNGTDGTNGTDGTNGTNG 329
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG---LPGKDGIPGTNGTK 76
+G G DG +G G G DG G NG DG G+ G G DG GTNGT
Sbjct: 303 TNGTNGTDGTNGTDGTNGTDGTNGTNGQDGAQGEQGDAGTNGTDGTDGTNGTN 355
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G G +G +G G G DG G +G +G G+DG G+ G GTNGT
Sbjct: 299 GDAGTNGTNGTDGTNGTDGTNGTDGTNGTNGQDGAQGEQGDAGTNGT 345
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G G DG G G+ G +G G +G +G G+DG G+ G GTNGT
Sbjct: 324 TNGTNGQDGAQGEQGDAGTNGTDGTDGTNGTNGQDGAQGEQGDAGTNGTN 373
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 5 QGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP 64
Q L++ + D + G+ + ++ G G G G G +G G +G +G G+DG
Sbjct: 705 QSALEIWQSIDGNE-GKTLEDFVAALKGEKGDAGTNGTDGTNGTNGTDGTNGANGQDGAQ 763
Query: 65 GKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
G+ G GTNGT + G D + DG
Sbjct: 764 GEQGDAGTNGTDGTNGTNGTDGTNGQDGA 792
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 24/48 (50%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ G G G G G DG G NG DG G DG G+DG G G
Sbjct: 819 TNGQNGAQGEQGDAGTNGTDGTNGTNGTDGTNGTDGTNGQDGAQGEQG 866
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 24/46 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G +G+DG GE G G G NG DG G DG G+D G G
Sbjct: 350 GTNGTNGQDGAQGEQGDAGTNGTNGTDGTNGTDGTNGQDSAQGEQG 395
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 28/57 (49%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G G +G +G G G DG G G G G DG G +G GTNGT + A G
Sbjct: 771 TNGTDGTNGTNGTDGTNGQDGAQGEQGDAGTNGTDGTNGTNGTDGTNGTNGQNGAQG 827
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 27 ISGRIGLDGRDGLPGEP------GLDGIPGRNGMD---GIPGKDGLPGKDGIPGTNGTKT 77
+G G +G+DG GE G DG G NG D G G++G G+ G GTNGT
Sbjct: 780 TNGTDGTNGQDGAQGEQGDAGTNGTDGTNGTNGTDGTNGTNGQNGAQGEQGDAGTNGTDG 839
Query: 78 DHYAMGADTKSFSDGV 93
+ G D + +DG
Sbjct: 840 TNGTNGTDGTNGTDGT 855
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 36 RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+DG GE G G+ G NG +G G +G G +G GTNG
Sbjct: 228 QDGAQGEQGDTGVTGTNGTNGTDGTNGTEGTNGTDGTNG 266
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 29 GRIGLDGRDGLPGEPG---------LDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G +G+DG GE G DG G NG DG G+ G G +G GT+GT
Sbjct: 323 GTNGTNGQDGAQGEQGDAGTNGTDGTDGTNGTNGQDGAQGEQGDAGTNGTNGTDGTN 379
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 18/87 (20%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG------------------KDGLPGK 66
T ++G G +G DG G G +G G NG DG G +DG G+
Sbjct: 238 TGVTGTNGTNGTDGTNGTEGTNGTDGTNGQDGAQGEQGDAGVTGTNGTNGTNGQDGAQGE 297
Query: 67 DGIPGTNGTKTDHYAMGADTKSFSDGV 93
G GTNGT G D + +DG
Sbjct: 298 QGDAGTNGTNGTDGTNGTDGTNGTDGT 324
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 22/40 (55%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
G G +G+DG GE G G G NG DG G +G G DG
Sbjct: 446 GTNGTNGQDGAQGEQGDAGTNGTNGTDGTNGTNGTDGNDG 485
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G G DG +G G+ G G G G +G G +G G DG GT+GT
Sbjct: 807 TNGTNGTDGTNGTNGQNGAQGEQGDAGTNGTDGTNGTNGTDGTNGTDGTN 856
>gi|281342748|gb|EFB18332.1| hypothetical protein PANDA_015150 [Ailuropoda melanoleuca]
Length = 1346
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 318 PGKPGLPGNPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 356
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 30/57 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+SG G G G PG+PGL G PG G G G GLPGK G+ G G K MG
Sbjct: 633 VSGPKGYQGLPGDPGQPGLSGQPGLPGPSGPKGNPGLPGKPGLTGPPGLKGSIGDMG 689
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G+ G PG PGL+G+ G G+ G+PG G+ G GIPG+ G +
Sbjct: 959 LKGDQGPPGQQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGIPGSAGPE 1008
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G+ G G PG+PG G+PG G G PG+ G PG+ PG NG K D
Sbjct: 935 LPGNGGIKGERGNPGQPGQPGLPGLKGDQGPPGQQGNPGR---PGLNGMKGD 983
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G GLPG PG+ G G G+ G PG+ GL G+ G+PG +G K +
Sbjct: 617 GSKGEKGDPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPSGPKGN 666
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG G+ G G GLPG G PG G
Sbjct: 729 IGLPGLPGPKGEPGLPGYPGNPGIKGSRGDTGLPGLPGTPGAKG 772
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ GL G G G PG G PGR G++G+ G GLPG G PG G
Sbjct: 952 GQPGLPGLKGDQGPPGQQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 997
>gi|410348458|gb|JAA40833.1| collagen, type XVIII, alpha 1 [Pan troglodytes]
Length = 1339
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G PG PGL G G G DG+PG GLPG++GI G G K D + G
Sbjct: 642 GDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSQG 687
>gi|403289549|ref|XP_003935914.1| PREDICTED: collagen alpha-5(IV) chain isoform 2 [Saimiri
boliviensis boliviensis]
Length = 1691
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G+ G G PG+PGL G+PG G G PG G PG+ PG NG K D
Sbjct: 1285 GIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGR---PGLNGMKGD 1328
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 27 ISGRIGLDGRDGLPG---------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G+ GLPG PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1286 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1342
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
ISG IGL G G GEPGL G PG G+ G G GLPG G PG G
Sbjct: 1070 ISG-IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKG 1116
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G G+PG+ G +
Sbjct: 1304 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPE 1353
>gi|395530618|ref|XP_003767386.1| PREDICTED: collagen alpha-1(XXIV) chain [Sarcophilus harrisii]
Length = 1661
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
I+G G G G G PG G+PG G G+PG G PGK G PG G + H
Sbjct: 1275 IAGSPGAQGIKGSSGMPGTPGVPGPKGEQGLPGHPGKPGKRGYPGAQGNQGPH 1327
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIP---GRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G G+ GLPG PGL GI GR G+ G PG G+ G G+PGT G
Sbjct: 1246 EGILGNSGKVGLPGRPGLPGIKGNTGRMGIAGSPGAQGIKGSSGMPGTPG 1295
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 29 GRIGLDGRDGLPG---EPGLDGIPGRNGMDGI---PGKDGLPGKDGIPGTNGT 75
G GL G+ G+PG PG G PG +G +GI GK GLPG+ G+PG G
Sbjct: 1217 GAPGLSGKPGIPGLMGPPGRKGEPGYHGAEGILGNSGKVGLPGRPGLPGIKGN 1269
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 28/56 (50%), Gaps = 12/56 (21%)
Query: 28 SGRIGLDGRDGLPGEPGL------------DGIPGRNGMDGIPGKDGLPGKDGIPG 71
G G++G GL GEPG G PG G G PG+DGL GKDGI G
Sbjct: 957 EGPPGIEGESGLQGEPGTKGDLGPVGNVGASGEPGLRGEPGTPGEDGLQGKDGIKG 1012
>gi|256087460|ref|XP_002579887.1| Collagen alpha-1(V) chain precursor [Schistosoma mansoni]
Length = 1794
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G G G+ G+PGEPGLDG PG+ G+ G G+DGL G+PG G K +
Sbjct: 569 LQGPKGFRGQPGIPGEPGLDGSPGQKGLPGAQGRDGL---VGVPGQKGEKGER 618
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
+G+ G+ GLPG G+ G PG G DGIPG GLPG G+
Sbjct: 1059 VGVKGQKGLPGLKGIKGFPGEPGDDGIPGNKGLPGLAGV 1097
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMGAD 85
GR GL G G G+PG+ PG G+DG PG+ GLP G+DG+ G G K + G D
Sbjct: 565 GRPGLQGPKGFRGQPGI---PGEPGLDGSPGQKGLPGAQGRDGLVGVPGQKGEKGERGND 621
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGM--DGIPGKDGLPGKDGIPGTNGTKTDH 79
SG+ GL G G G+PG G PGR+G+ D G G+PG+DGI G G K D
Sbjct: 681 SGQPGLPGFSGTVGKPGRRGEPGRDGIVFDAQKGASGIPGRDGIKGEKGEKGDR 734
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G +G G PG PG GIPG G G+ G DGLPG +G G G + +G +
Sbjct: 855 TGEKGEEGTQGFPGPPGRKGIPGIKGEKGVRGADGLPGLNGPKGEIGDRGPKGEIGEPGE 914
Query: 88 SFS 90
+
Sbjct: 915 VYQ 917
>gi|226693380|ref|NP_031766.3| collagen alpha-1(IX) chain precursor [Mus musculus]
gi|148682463|gb|EDL14410.1| procollagen, type IX, alpha 1 [Mus musculus]
Length = 921
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 33/60 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G+DGRDG+PG PG G G+ G G G GLPG GIPG G + GA K
Sbjct: 537 TGLPGVDGRDGIPGMPGTKGEAGKPGPPGDVGLQGLPGVPGIPGAKGVAGEKGNTGAPGK 596
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 25/46 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +GL G G+PG PG G+ G G G PGK G G G PG G
Sbjct: 565 GDVGLQGLPGVPGIPGAKGVAGEKGNTGAPGKPGQLGSSGKPGQQG 610
>gi|410216848|gb|JAA05643.1| collagen, type XVIII, alpha 1 [Pan troglodytes]
gi|410306078|gb|JAA31639.1| collagen, type XVIII, alpha 1 [Pan troglodytes]
Length = 1339
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G PG PGL G G G DG+PG GLPG++GI G G K D + G
Sbjct: 642 GDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSQG 687
>gi|403289547|ref|XP_003935913.1| PREDICTED: collagen alpha-5(IV) chain isoform 1 [Saimiri
boliviensis boliviensis]
Length = 1685
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G+ G G PG+PGL G+PG G G PG G PG+ PG NG K D
Sbjct: 1279 GIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGR---PGLNGMKGD 1322
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 27 ISGRIGLDGRDGLPG---------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G+ GLPG PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1280 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1336
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
ISG IGL G G GEPGL G PG G+ G G GLPG G PG G
Sbjct: 1070 ISG-IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKG 1116
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G G+PG+ G +
Sbjct: 1298 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPE 1347
>gi|395754300|ref|XP_002832026.2| PREDICTED: collagen alpha-5(IV) chain isoform 2 [Pongo abelii]
Length = 1685
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 26 VISGRIGLDGRDGLPG---------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G+ GLPG PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1279 AIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1336
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
S + G + G G PG+PGL G+PG G G PG G PG+ PG NG K D
Sbjct: 1271 SPGLPGNGAIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGR---PGLNGMKGD 1322
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG G+ G G GLPG G PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKG 1116
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G G+PG+ G +
Sbjct: 1298 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPE 1347
>gi|19848530|gb|AAK15783.1| collagen IV alpha 1 chain precursor, partial [Anopheles gambiae]
Length = 801
Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD------GIPG 71
D GR G G +G G+PG PGL G G NG DG+PG GLPG GIPG
Sbjct: 149 DRGRDGLPGYPGIPGTNGVPGVPGAPGLAGRDGCNGTDGLPGLSGLPGNPGPRGYAGIPG 208
Query: 72 TNGTK------TDHYAMGADTKSFSDGV--LPSVQRAIA 102
T G K ++Y G + +DG+ LP Q +
Sbjct: 209 TKGEKGEPARHPENYNKGQKGEPGNDGLEGLPGPQGEVG 247
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G GRDGLPG PG IPG NG+ G+PG GL G+DG GT+G
Sbjct: 143 LQGPKGDRGRDGLPGYPG---IPGTNGVPGVPGAPGLAGRDGCNGTDG 187
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 12/60 (20%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP------------GKDGLPGKDGIPGTNG 74
+ G +GL G G+ G PG +G+PG G G P G+DGLPG GIPGTNG
Sbjct: 107 LPGPMGLKGAKGVRGFPGSEGLPGEKGTKGEPGPVGLQGPKGDRGRDGLPGYPGIPGTNG 166
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G G G G PG PG G+PG G G+PG+DG PG G PG G
Sbjct: 587 MKGDKGERGYAGEPGRPGASGVPGERGYPGMPGEDGTPGLRGEPGPKGE 635
>gi|410259646|gb|JAA17789.1| collagen, type XVIII, alpha 1 [Pan troglodytes]
Length = 1339
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G PG PGL G G G DG+PG GLPG++GI G G K D + G
Sbjct: 642 GDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSQG 687
>gi|383857895|ref|XP_003704439.1| PREDICTED: fibril-forming collagen alpha chain-like [Megachile
rotundata]
Length = 1506
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 31/61 (50%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
R + GR SG G GRDG+PGE G G PG G G PG G PG G PG G
Sbjct: 415 RGETGRPGQPGESGPQGPSGRDGVPGEKGSTGAPGSVGPPGFPGARGQPGIAGNPGIPGA 474
Query: 76 K 76
K
Sbjct: 475 K 475
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 28/45 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+G GL G GLPGE G+ G PG G DG PG G PG+DG PG
Sbjct: 1158 FTGLQGLPGPAGLPGEKGMIGFPGPPGKDGDPGPRGSPGRDGSPG 1202
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 32/57 (56%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D GR+ + G GL GR G PG+PG G G G DG PG+ G PG G+PG G
Sbjct: 570 DPGRSGPPGLQGARGLMGRPGAPGKPGNPGERGIQGADGKPGEHGPPGSQGLPGAIG 626
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ GR G G+ G PGE G+ G G+ G G PG GLPG G PG G
Sbjct: 585 LMGRPGAPGKPGNPGERGIQGADGKPGEHGPPGSQGLPGAIGPPGEKG 632
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 26/48 (54%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G G G GLPG GL G G G G PGKDG PG G PG +G+
Sbjct: 1153 KGHRGFTGLQGLPGPAGLPGEKGMIGFPGPPGKDGDPGPRGSPGRDGS 1200
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 27 ISGRIGLDGRDGLPGEP------GLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
+ G+ G G DG PG P G G+PG G+ G+ G G PG DG G G D
Sbjct: 273 LPGKDGNIGEDGEPGPPGSIGPVGPRGLPGMPGLPGMKGHRGFPGLDGAKGEQGVSGDKG 332
Query: 81 AMGA 84
+MGA
Sbjct: 333 SMGA 336
>gi|30082|emb|CAA40748.1| alpha 1(VIII) collagen [Homo sapiens]
Length = 744
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP--GKDGIPGTNG 74
IG G+DG+PG+PG G G G+ G+PG GLP GK G PG G
Sbjct: 315 IGKPGQDGIPGQPGFPGGKGEQGLPGLPGAPGLPGIGKPGFPGPKG 360
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLD---GIPGRNGMDGI-----PGKDGLPGKDGIP 70
+G+ T G G G+ G PGEPG G+PG G GI PG+DG+PG+ G P
Sbjct: 271 VGKPGVTGFPGPQGPLGKPGAPGEPGRQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFP 330
Query: 71 GTNGTK 76
G G +
Sbjct: 331 GGKGEQ 336
>gi|301780420|ref|XP_002925629.1| PREDICTED: collagen alpha-5(IV) chain-like [Ailuropoda melanoleuca]
Length = 1691
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 30/57 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+SG G G G PG+PGL G PG G G G GLPGK G+ G G K MG
Sbjct: 977 VSGPKGYQGLPGDPGQPGLSGQPGLPGPSGPKGNPGLPGKPGLTGPPGLKGSIGDMG 1033
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G+ G PG PGL+G+ G G+ G+PG G+ G GIPG+ G +
Sbjct: 1304 LKGDQGPPGQQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGIPGSAGPE 1353
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G+ G G PG+PG G+PG G G PG+ G PG+ PG NG K D
Sbjct: 1280 LPGNGGIKGERGNPGQPGQPGLPGLKGDQGPPGQQGNPGR---PGLNGMKGD 1328
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G GLPG PG+ G G G+ G PG+ GL G+ G+PG +G K +
Sbjct: 961 GSKGEKGDPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPSGPKGN 1010
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG G+ G G GLPG G PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSRGDTGLPGLPGTPGAKG 1116
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ GL G G G PG G PGR G++G+ G GLPG G PG G
Sbjct: 1297 GQPGLPGLKGDQGPPGQQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1342
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G GEPG G PG++G +G PG GLPG G PG G
Sbjct: 284 VKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGNPGYPGEPG 325
>gi|297671393|ref|XP_002813835.1| PREDICTED: collagen alpha-1(VII) chain [Pongo abelii]
Length = 2889
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 29/61 (47%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
S + G G G DG PG PG G PG G G+ G GLPG G PG G + G
Sbjct: 1277 SAIAKGERGFPGADGRPGSPGRPGNPGTPGAPGLKGSPGLPGPRGDPGEQGPRGPKGEQG 1336
Query: 84 A 84
A
Sbjct: 1337 A 1337
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GLDGR GL G+PG PG +G +G GK G PG+DG+PG G +
Sbjct: 1718 GPPGLDGRSGLDGKPG---APGPSGPNGAAGKAGDPGRDGLPGLRGEQ 1762
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G G G G PGL G+PG G G IPG G PGKDG+ G G K D MG
Sbjct: 2508 GSKGEPGDKGSAGSPGLRGLPGPQGQPGAAGIPGDPGSPGKDGVSGIRGEKGDVGFMG 2565
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GLDG G PG PGL G G G G+PG+ G PGK+G+ G G +
Sbjct: 2575 VKGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQLGAPGKEGLIGPKGDR 2630
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKDGIPG 71
G+ GL+G++G PG+PG DG G G G P G+DG G+ G PG
Sbjct: 1781 GKPGLNGKNGEPGDPGEDGRKGEKGDSGAPGREGRDGPKGERGAPG 1826
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 32/68 (47%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
D+G + G G G +G PG+ G G PG G G PG GLPG G PG G
Sbjct: 2482 DMGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGSPGLRGLPGPQGQPGAAGIPG 2541
Query: 78 DHYAMGAD 85
D + G D
Sbjct: 2542 DPGSPGKD 2549
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD--GIPGTNGTK 76
G G DG G PG PG G+PG G G PG G PG+ G+PG G K
Sbjct: 2208 GASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEK 2257
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDG------LPGKDGIPGTNGTKTDHYAMGA 84
G GLPG+ G G PG G DG GKDG +PG G+PG G K + GA
Sbjct: 2186 QGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGA 2242
>gi|224044919|ref|XP_002196734.1| PREDICTED: collagen alpha-2(I) chain [Taeniopygia guttata]
Length = 1364
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 29/50 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+SG G G G G PG +G PG G DG PG DG PG+DG PG G +
Sbjct: 898 VSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDGPPGRDGAPGFKGER 947
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 30/52 (57%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G +G+ G PGEPG G PG G+ G+PG GLPG DG G G + A G
Sbjct: 375 GEEGKRGSPGEPGSAGPPGPAGLRGVPGSRGLPGADGRAGVMGPAGNRGASG 426
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTK 76
GR ++G G G G PG PG GI G NG+DG G+ G P G+ G PG NGT
Sbjct: 150 GRPGERGVAGPQGARGFPGTPGLPGFKGIRGHNGLDGQKGQPGTPGTKGEPGAPGENGTP 209
Query: 77 TDHYAMG 83
A G
Sbjct: 210 GQPGARG 216
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
SG +G G +G PGE G DG PG DG PG+DG PG G G G+ A+GA
Sbjct: 908 SGPVGSPGPNGAPGEAGRDGNPGN---DGPPGRDGAPGFKGERGAPGSPGPSGALGA 961
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLD---GIPGRNGMDGIPGKDGLPGKDG 68
I G GLDG+ G PG PG G PG NG G PG GLPG+ G
Sbjct: 178 IRGHNGLDGQKGQPGTPGTKGEPGAPGENGTPGQPGARGLPGERG 222
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI------------PGTNGTKTDHYA 81
DG G PG PG G+ G G G PG GLPG GI PGT GTK + A
Sbjct: 143 DGHPGKPGRPGERGVAGPQGARGFPGTPGLPGFKGIRGHNGLDGQKGQPGTPGTKGEPGA 202
Query: 82 MGAD 85
G +
Sbjct: 203 PGEN 206
>gi|149744966|ref|XP_001490469.1| PREDICTED: collagen alpha-5(IV) chain-like isoform 1 [Equus
caballus]
Length = 1685
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG G+ G G GLPG G PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSLGDTGLPGLPGTPGAKG 1116
>gi|363732236|ref|XP_419902.3| PREDICTED: collagen alpha-1(XXI) chain [Gallus gallus]
Length = 957
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 28/49 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
SG G G+DGLPG PG G G+ G G+ G G PG GIPG G K
Sbjct: 568 SGDPGRSGKDGLPGSPGFKGEVGQPGSPGLEGHRGEPGIPGIPGNQGAK 616
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 24/37 (64%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G PG PG G PGR+G DG+PG G G+ G PG+ G
Sbjct: 560 GFPGMPGRSGDPGRSGKDGLPGSPGFKGEVGQPGSPG 596
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD------GIPG 71
D GR+ + G G G G PG PGL+G G G+ GIPG G G+ G+PG
Sbjct: 570 DPGRSGKDGLPGSPGFKGEVGQPGSPGLEGHRGEPGIPGIPGNQGAKGQKGEIGPPGLPG 629
Query: 72 TNGTKTDHYAMGAD 85
G+ + MG +
Sbjct: 630 AKGSPGETGLMGPE 643
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 27/51 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G G G DG PG G G PG G G+ G GLPG G PG +GTK D
Sbjct: 467 GYPGQPGPDGKPGYQGSAGTPGIPGTPGVQGPRGLPGIKGEPGKDGTKGDR 517
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL G DG+PG G+ G PG G G+PGK+G G GI
Sbjct: 846 GLPGNDGVPGLTGIPGRPGARGTRGLPGKNGAKGNQGI 883
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
PG PG DG+P G+ GIPG+ G G G+PG NG K +
Sbjct: 844 FPGLPGNDGVP---GLTGIPGRPGARGTRGLPGKNGAKGNQ 881
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGI---PGKDGLPGKDGIPGTNG 74
G+ G G G PG PG G+ G G+ GI PGKDG G G+PG G
Sbjct: 476 GKPGYQGSAGTPGIPGTPGVQGPRGLPGIKGEPGKDGTKGDRGLPGFPG 524
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G DG+ G G PG+ G PG G G+PG G PGKDG G G
Sbjct: 470 GQPGPDGKPGYQGSAGTPGIPGTPGVQGPRGLPGIKGEPGKDGTKGDRG 518
>gi|348507260|ref|XP_003441174.1| PREDICTED: collagen alpha-1(XXI) chain-like [Oreochromis niloticus]
Length = 1657
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+GR GL G+ G+ G+PG G PG G GI G GLPG+DG PG
Sbjct: 397 TGRPGLRGKQGIVGDPGERGTPGLKGEPGIIGDPGLPGRDGDPG 440
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 27/50 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G IG G G G PG+ G PG G G PG G PG G+PG G+K
Sbjct: 1366 LQGPIGPKGNMGERGSPGIKGTPGLAGSAGQPGSPGQPGHPGMPGMKGSK 1415
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G IG G GL GEPG+ G+PG G+DG G+ G PG G G G
Sbjct: 1308 GSIGPLGPQGLLGEPGIPGLPGNAGLDGQKGEVGEPGPRGFKGATG 1353
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 23/42 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
I G GL G GLPG PG G PG NG+ G PG G G G
Sbjct: 1541 IRGLPGLSGSRGLPGHPGRPGYPGINGLKGEPGFKGEKGSPG 1582
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 25/49 (51%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G G G G PG PG G PG G G+PGK G G GI G G K
Sbjct: 478 TGPRGYKGSAGKPGRPGFIGPPGPTGHVGMPGKQGPKGDTGIQGIKGVK 526
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++G S I G GL G G PG PG G PG GM G G+ G PG+ G G++G
Sbjct: 1375 NMGERGSPGIKGTPGLAGSAGQPGSPGQPGHPGMPGMKGSKGQRGNPGERGDMGSSG 1431
>gi|262073124|ref|NP_001160001.1| collagen alpha-3(IV) chain precursor [Bos taurus]
Length = 1670
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNGTKTD 78
+G G PG+PGL G PGR G+DGIPG GLPG G P +G K D
Sbjct: 547 EGEVGAPGDPGLQGHPGRKGLDGIPGTPGVKGLPGPKGEPALSGEKGD 594
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGKDGIPGTNG 74
++G + G G G DG+PG PG+ G+PG G + G G GLPG GIPG+ G
Sbjct: 549 EVGAPGDPGLQGHPGRKGLDGIPGTPGVKGLPGPKGEPALSGEKGDPGLPGDPGIPGSPG 608
>gi|149744960|ref|XP_001490495.1| PREDICTED: collagen alpha-5(IV) chain-like isoform 2 [Equus
caballus]
Length = 1691
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG G+ G G GLPG G PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSLGDTGLPGLPGTPGAKG 1116
>gi|395823701|ref|XP_003785120.1| PREDICTED: collagen alpha-3(IV) chain [Otolemur garnettii]
Length = 1717
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGI---PGKDGLPGKDGIPGTNGTKTDH 79
G++G PGEPGL G PGR G DGI PG+ GL G G P KTD
Sbjct: 589 GQEGAPGEPGLQGQPGRKGFDGIPGTPGQKGLRGPKGEPALRDEKTDR 636
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 25/43 (58%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GL G G G+PG +G PG G G+PG G PG G+PG G
Sbjct: 1312 GLKGEKGFMGQPGREGRPGPAGDRGLPGHPGAPGTPGLPGLRG 1354
>gi|296490161|tpg|DAA32274.1| TPA: collagen alpha-3(IV) chain [Bos taurus]
Length = 1670
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNGTKTD 78
+G G PG+PGL G PGR G+DGIPG GLPG G P +G K D
Sbjct: 547 EGEVGAPGDPGLQGHPGRKGLDGIPGTPGVKGLPGPKGEPALSGEKGD 594
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGKDGIPGTNG 74
++G + G G G DG+PG PG+ G+PG G + G G GLPG GIPG+ G
Sbjct: 549 EVGAPGDPGLQGHPGRKGLDGIPGTPGVKGLPGPKGEPALSGEKGDPGLPGDPGIPGSPG 608
>gi|51593396|gb|AAH78424.1| Col9a2 protein [Danio rerio]
Length = 691
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G+DG+DG PG PG+ G G+NG G PG G PG G+PG G
Sbjct: 300 NGLPGIDGKDGTPGIPGIKGAAGQNGRPGAPGNQGDPGLPGMPGAKG 346
>gi|118791832|ref|XP_001238235.1| AGAP009200-PB [Anopheles gambiae str. PEST]
gi|116117789|gb|EAU75970.1| AGAP009200-PB [Anopheles gambiae str. PEST]
Length = 800
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD------GIPG 71
D GR G G +G G+PG PGL G G NG DG+PG GLPG GIPG
Sbjct: 148 DRGRDGLPGYPGIPGTNGVPGVPGAPGLAGRDGCNGTDGLPGLSGLPGNPGPRGYAGIPG 207
Query: 72 TNGTK------TDHYAMGADTKSFSDGV--LPSVQRAIA 102
T G K ++Y G + +DG+ LP Q +
Sbjct: 208 TKGEKGEPARHPENYNKGQKGEPGNDGLEGLPGPQGEVG 246
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G GRDGLPG PG IPG NG+ G+PG GL G+DG GT+G
Sbjct: 142 LQGPKGDRGRDGLPGYPG---IPGTNGVPGVPGAPGLAGRDGCNGTDG 186
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 12/60 (20%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP------------GKDGLPGKDGIPGTNG 74
+ G +GL G G+ G PG +G+PG G G P G+DGLPG GIPGTNG
Sbjct: 106 LPGPMGLKGAKGVRGFPGSEGLPGEKGTKGEPGPVGLQGPKGDRGRDGLPGYPGIPGTNG 165
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G G G G PG PG G+PG G G+PG+DG PG G PG G
Sbjct: 586 MKGDKGERGYAGEPGRPGASGVPGERGYPGMPGEDGTPGLRGEPGPKGE 634
>gi|10179322|dbj|BAB13673.1| type IV collagen alpha 5 chain [Mus musculus]
Length = 1691
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGSPGRDGEVGLPGDPGLPGQPGLPGILGSKGE 700
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 26/44 (59%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG G+ G G+ GLPG G PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGETGLPGLPGNPGAKG 1116
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+ G G G G PG PGL G+PG G DG+P GLPG G PG
Sbjct: 552 TLPGMKGDKGELGFPGAPGLPGLPGSPGKDGLP---GLPGPKGEPG 594
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G G G G PG PG+ G G G+ G+PG G G+ G+PG GT
Sbjct: 1078 LPGPKGEPGLPGYPGNPGIKGSVGETGLPGLPGNPGAKGQPGLPGFPGT 1126
>gi|432110195|gb|ELK33969.1| Collagen alpha-6(IV) chain [Myotis davidii]
Length = 1255
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNGTK 76
GL G+ GLPG PG G G G+ G +PGKDGLPGK G PG G+K
Sbjct: 346 GLPGKTGLPGPPGFTGPRGDKGLPGFPGLPGKDGLPGKVGNPGLPGSK 393
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 28 SGRIGLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
SG +G G G PG PG GIPG G+ + GK GLPG G PGT+G
Sbjct: 437 SGLLGPKGEQGSPGTPGHVGQPGIPGTVGLPSVKGKPGLPGAPGFPGTSG 486
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 17/84 (20%)
Query: 27 ISGRIGLDGRDGLPGE---PGLD--------------GIPGRNGMDGIPGKDGLPGKDGI 69
+ G GL G+DGLPG+ PGL G PG G+ G+PG G PG G+
Sbjct: 368 LPGFPGLPGKDGLPGKVGNPGLPGSKGVPGDIFGAEIGAPGEQGLQGLPGDRGFPGDSGL 427
Query: 70 PGTNGTKTDHYAMGADTKSFSDGV 93
PG G +G + S G
Sbjct: 428 PGPKGLPGKSGLLGPKGEQGSPGT 451
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 7 MLQVLEVHDRRDIGRAISTVISGRIGLDGRD-GLPGEPGLDGIPGRNGMDGIPGKDGLPG 65
ML + D+ G A SG G G+ GLPG PG G PG G+ GI GK GL G
Sbjct: 608 MLNLQFKGDKGSQGSAGLDGFSGPRGDQGQTLGLPGSPGPKGEPGEPGLKGIKGKSGLVG 667
Query: 66 KDGIPGTNG 74
G+PG G
Sbjct: 668 DLGVPGIKG 676
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 30/50 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G+ G+ GL G+ G+ GI G +G GIPG GLPG GIPG K D
Sbjct: 655 GLKGIKGKSGLVGDLGVPGIKGEDGKVGIPGDVGLPGSPGIPGIAAIKGD 704
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPG---EPGLDG---IPGRNGMDGIPGKDGLPGKDGI 69
+ I AI G +GL G DG+PG +PG+ G + G G+ GIPGKDGL G G
Sbjct: 932 QTPIAEAIQ-APPGPMGLPGMDGIPGLTGDPGVQGPIGLQGSKGLPGIPGKDGLSGLPGP 990
Query: 70 PGTNG 74
PG G
Sbjct: 991 PGALG 995
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
++G G+ G GL G GL GIPG++G+ G+PG G G G+PG
Sbjct: 957 LTGDPGVQGPIGLQGSKGLPGIPGKDGLSGLPGPPGALGDPGLPG 1001
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 29 GRIGLDGRDGLP------GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G+ G G G P G PGL G+PG G+ G G GLPG G+PG G K + ++
Sbjct: 489 GKKGPKGETGPPASTGKRGLPGLKGLPGSPGLIGFLGNSGLPGDTGLPGLPGPKGEKGSV 548
Query: 83 G 83
G
Sbjct: 549 G 549
>gi|405978684|gb|EKC43054.1| Collagen alpha-1(IV) chain [Crassostrea gigas]
Length = 1630
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 36/53 (67%), Gaps = 5/53 (9%)
Query: 27 ISGRIGLDGRDGLP--GEPGLDGIPGRNGMD---GIPGKDGLPGKDGIPGTNG 74
+ G GL GRDGL GE G G+PGR G+ G+PG+DG+PG+DG+PG G
Sbjct: 759 VKGDSGLPGRDGLSSRGEKGDSGLPGRPGLQGQPGLPGQDGVPGQDGLPGMKG 811
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ GR + + G G G+ GLPG PG+ G PG G +GIPG DGLPG G PG NG
Sbjct: 1030 ERGRDGAPGLPGMKGELGQQGLPGFPGMKGERGFPGPAGQNGIPGNDGLPGMKGNPGFNG 1089
Query: 75 T 75
Sbjct: 1090 N 1090
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 4 VQGMLQVLEVHDRRDIGRAI------STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI 57
+GM E + D GRA S +G G G G+PGE G+ G PG G G
Sbjct: 1310 TKGMRIKGEKGETGDRGRAGFPGLPGSKGDAGFPGPKGFPGIPGERGVQGFPGMKGESGF 1369
Query: 58 PGKDGLPGKDGIPGTNGT 75
PG+ G+PG+DG PG G
Sbjct: 1370 PGQPGIPGEDGFPGAQGA 1387
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 32/56 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G GL G G+PG GL G+ G +G G PG G PG+DG+PG G K D G
Sbjct: 963 TGPSGLPGLQGVPGNDGLPGVKGESGRPGSPGSPGQPGQDGLPGLPGMKGDQGPTG 1018
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ D G + G+ GL G+DG+PG+ GL G+ G G G+PG G PG G PG G
Sbjct: 776 EKGDSGLPGRPGLQGQPGLPGQDGVPGQDGLPGMKGDTGPSGLPGLPGSPGLKGEPGIEG 835
Query: 75 TKTDHYAMGADTKSFSDGVL 94
+ G D + GV+
Sbjct: 836 PEGTRGTPGEDGRPGLPGVV 855
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
+ G G G +GL GEPGL+G+PG G+ G+PG G G+DG+ G G K D G D
Sbjct: 1117 LPGVPGERGPEGLKGEPGLNGLPGSPGVAGLPGMKGDRGRDGVNGLPGPKGDSGLPGRD 1175
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query: 28 SGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ G+ G DGLPG PG +G PGR G+ G PG +G+PG++G G G
Sbjct: 1067 AGQNGIPGNDGLPGMKGNPGFNGNPGRAGLKGEPGLNGIPGREGPKGEAG 1116
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD-----GLPGKDGIPGTNGTKTDHYAMG 83
GR GL G G G PG G+ GR G+ G+PG GLPG G G G K + Y +
Sbjct: 491 GRPGLPGPKGSKGNPGFPGVSGREGLPGLPGAKGKFFGGLPGVPGRDGFKGDKGEPYKL- 549
Query: 84 ADTKSFSD 91
+++SF D
Sbjct: 550 -ESESFKD 556
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI---PGKDGLPGKDGIPGTNG 74
+ GRA G G+ GR+G GE GL G+PG G +G+ PG +GLPG G+ G G
Sbjct: 1090 NPGRAGLKGEPGLNGIPGREGPKGEAGLPGVPGERGPEGLKGEPGLNGLPGSPGVAGLPG 1149
Query: 75 TKTDH 79
K D
Sbjct: 1150 MKGDR 1154
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP-----GKDGIPGTNGTKTDHYAM 82
SG G DGR PGEPG G+PG G G+PG+DGL G G+PG G +
Sbjct: 739 SGSPGFDGR---PGEPGPQGLPGVKGDSGLPGRDGLSSRGEKGDSGLPGRPGLQGQPGLP 795
Query: 83 GADTKSFSDGV 93
G D DG+
Sbjct: 796 GQDGVPGQDGL 806
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 32 GLDGRDGLPGEPGLDGIPGRN------GMDGIPGKDGLPGKDGIPGTNG 74
G GR GL GEPGL+GIPGR G+ G+PG+ G G G PG NG
Sbjct: 1089 GNPGRAGLKGEPGLNGIPGREGPKGEAGLPGVPGERGPEGLKGEPGLNG 1137
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 27 ISGRIGLDGRDGLP------GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G G+ GRDGLP GEPGL G+ G GM G G DG+PG+ G G G + D
Sbjct: 675 FPGNPGIPGRDGLPGLKGDRGEPGLPGVNGLPGMKGERGFDGIPGEAGPRGLPGPRGDR- 733
Query: 81 AMGADTKSFSDGV 93
G+D S S G
Sbjct: 734 --GSDGPSGSPGF 744
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Query: 27 ISGRIGLDGRDGLPGEPGLDG--IPGRNGMDGIPGKDGLPGKD------GIPGTNGTKT 77
+SG+ GL G G PG G G IPG G +G+PG+DGLPG+ G+PG G T
Sbjct: 431 LSGQPGLPGEKGNPGPKGNAGVSIPGVKGANGLPGRDGLPGRKGETGFTGLPGIPGNST 489
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNG-----MDGIPGKDGLPGKDGIPGTNG 74
SG G+DG G PG PG G PG G + G+ G +GLPG+DG+PG G
Sbjct: 423 SGLPGIDGLSGQPGLPGEKGNPGPKGNAGVSIPGVKGANGLPGRDGLPGRKG 474
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+ G G G G+PGE G G PG+ G G+PG G+PG DG+PG G + G
Sbjct: 935 LQGMKGERGFPGIPGEQGRSGEPGQKGDTGPSGLPGLQGVPGNDGLPGVKGESGRPGSPG 994
Query: 84 ADTKSFSDGV 93
+ + DG+
Sbjct: 995 SPGQPGQDGL 1004
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 67
+ G +G G GLPG GL GIPG G G PG+ G PG D
Sbjct: 851 LPGVVGAKGTPGLPGADGLSGIPGERGEAGFPGQPGAPGLD 891
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G+ G DGLPG G G PG G G PG+DGLPG G+ G G
Sbjct: 968 LPGLQGVPGNDGLPGVKGESGRPGSPGSPGQPGQDGLPGLPGMKGDQG 1015
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPG---KDGLPGKDGIPGTNGTK 76
L G G PG PG GIPGR+G+ G+ G + GLPG +G+PG G +
Sbjct: 666 LKGTKGEPGFPGNPGIPGRDGLPGLKGDRGEPGLPGVNGLPGMKGER 712
>gi|17507511|ref|NP_492619.1| Protein COL-64 [Caenorhabditis elegans]
gi|3877433|emb|CAB05733.1| Protein COL-64 [Caenorhabditis elegans]
Length = 370
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G +G G DG PG PG G G +G DG PG G PG G PG NG + ++
Sbjct: 146 NGSVGEKGEDGQPGSPGKPGEDGESGTDGEPGFIGFPGFPGAPGENGEQGNN 197
>gi|449691366|ref|XP_004212647.1| PREDICTED: collagen alpha-1(IV) chain-like, partial [Hydra
magnipapillata]
Length = 956
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G+DG+ G+ G G PG++G+DG PGKDGLPG G G G K
Sbjct: 287 GSPGEKGKDGISGKQGKPGPPGKDGVDGTPGKDGLPGNPGPEGPKGEK 334
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNG 74
+ G ++V+ G G G G PGE G DGI G+ G G PGKDG+ PGKDG+PG G
Sbjct: 268 EKGEKGNSVV-GLPGDPGEKGSPGEKGKDGISGKQGKPGPPGKDGVDGTPGKDGLPGNPG 326
Query: 75 TK 76
+
Sbjct: 327 PE 328
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 22 AISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG---KDGLPGKDGIPGTNG 74
IS I G GL G PG+PGLDG PG++ G PG KDG PG G PGT G
Sbjct: 154 GISGPIKGEPGLKGD---PGKPGLDGAPGKSVPKGEPGRDGKDGDPGAKGEPGTPG 206
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 25/105 (23%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDG----------------------LPGEPGLDGIPGRN 52
++ + G A + I+G+ G +G+DG + GEPGL G PG+
Sbjct: 113 EKGEKGDAGTPGIAGKNGENGKDGQDGPKGDKGEKGLQGPIGISGPIKGEPGLKGDPGKP 172
Query: 53 GMDGIPGKD---GLPGKDGIPGTNGTKTDHYAMGADTKSFSDGVL 94
G+DG PGK G PG+DG G G K + G + G +
Sbjct: 173 GLDGAPGKSVPKGEPGRDGKDGDPGAKGEPGTPGESGRDGEKGEI 217
>gi|301612090|ref|XP_002935544.1| PREDICTED: collagen alpha-1(XXVII) chain-like [Xenopus (Silurana)
tropicalis]
Length = 1797
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPG------------RNGMDGIPGKDGLPGKDGIPGTNGTK 76
G +GL G+ G PGE G G PG R G +G G DG+PGKDG PG G +
Sbjct: 1347 GTVGLKGKPGKPGESGAHGQPGAIGVTGPRGVVGRQGQEGPAGPDGIPGKDGSPGLKGEQ 1406
Query: 77 TDHYAMG 83
D +G
Sbjct: 1407 GDDGEIG 1413
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
++G +G G G+PG PG G PG G G+PG+ GLPGK G+ G
Sbjct: 1414 LAGTLGKRGNTGVPGLPGAQGPPGFRGERGLPGEIGLPGKRGMEG 1458
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+ G G G PGEPG+ G G G G PG+ GLPG G+ G G +
Sbjct: 704 GQKGYPGPQGHPGEPGVRGPEGSPGAKGYPGRQGLPGPIGVSGPKGNR 751
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
T + G + G+ G PG G G PG G +G PG G PG+ G+PG
Sbjct: 694 TGVPGPLSRKGQKGYPGPQGHPGEPGVRGPEGSPGAKGYPGRQGLPG 740
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G IGL G G G G+ G+PG G G G+ GLPG+ G+PG G +
Sbjct: 1410 GEIGLAGTLGKRGNTGVPGLPGAQGPPGFRGERGLPGEIGLPGKRGME 1457
>gi|47220033|emb|CAG12181.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1097
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 9/58 (15%)
Query: 28 SGRIGLDGRDGLPGEP---------GLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+GR G+DG G+PG+P GL G+PG G G GK GLPG +G PG G +
Sbjct: 518 TGRTGMDGGRGIPGDPGSKGDRGFDGLPGLPGNKGHRGDRGKPGLPGPNGQPGEKGAR 575
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G GR+G GE GL G+PG G G PG G+ G+DG PG G
Sbjct: 619 IDGPPGHPGREGPAGEKGLQGLPGPQGPVGYPGIRGVKGEDGFPGAKG 666
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G G+ G+PG PG+DG PG G +G G+ GL G+PG G
Sbjct: 601 LPGEKGSQGKQGMPGLPGIDGPPGHPGREGPAGEKGL---QGLPGPQG 645
>gi|402902462|ref|XP_003914121.1| PREDICTED: collagen alpha-1(IV) chain-like, partial [Papio anubis]
Length = 1307
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G +G G GLPGE PGLDGIPG G G+PG + G PG DGIPG+
Sbjct: 741 GSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 800
Query: 74 GTKTD 78
G K +
Sbjct: 801 GEKGE 805
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 34/65 (52%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ G T SG GL G+ G PG PG G G G+ G PG+ G PG G+PG G
Sbjct: 482 DKGSQGLPGVTGQSGLPGLPGQQGSPGIPGFPGSKGEMGVMGTPGQPGSPGPVGVPGLPG 541
Query: 75 TKTDH 79
K DH
Sbjct: 542 EKGDH 546
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 37/84 (44%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G G G PG G+PG G G+PG DG+PG G G GT G
Sbjct: 730 MPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKG 789
Query: 87 KSFSDGVLPSVQRAIAAGLVIYRF 110
+ SDG+ S GL F
Sbjct: 790 EPGSDGIPGSAGEKGEPGLPGRGF 813
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G GIPG G+K +
Sbjct: 462 IKGEKGFPGFPGLDMPGPKGDKGSQGLPGVTGQSGLPGLPGQQGSPGIPGFPGSKGEMGV 521
Query: 82 MGADTKSFSDGVL 94
MG + S G +
Sbjct: 522 MGTPGQPGSPGPV 534
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 25/43 (58%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G GL G PG G PG G+ G G GLPG DGIPG G
Sbjct: 729 GMPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKG 771
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G+ G+PG G PG G PG G + Y
Sbjct: 127 GFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEIY 172
>gi|428172413|gb|EKX41322.1| hypothetical protein GUITHDRAFT_112533 [Guillardia theta CCMP2712]
Length = 1003
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G GL+G G G PG G PG NG G+PG G PG G+ G G+ H + G+
Sbjct: 371 GPAGLNGLPGPAGAPGTQGAPGLNGAGGVPGAHGAPGAPGVSGAPGSNGAHGSPGS 426
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G G G PG+ G PG G++G+PG G PG G PG NG
Sbjct: 353 GIAGPQGAMGAPGIPGQPGPAGLNGLPGPAGAPGTQGAPGLNGA 396
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 27 ISGRIGLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
I+G G G G+PG+PG L+G+PG G G G GL G G+PG +G
Sbjct: 354 IAGPQGAMGAPGIPGQPGPAGLNGLPGPAGAPGTQGAPGLNGAGGVPGAHGA 405
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP 64
++G G+ G G PG PG+ G PG NG G PG G P
Sbjct: 393 LNGAGGVPGAHGAPGAPGVSGAPGSNGAHGSPGSPGAP 430
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G G G G PG G G+PG +G G PG G PG +G G+ G+
Sbjct: 378 LPGPAGAPGTQGAPGLNGAGGVPGAHGAPGAPGVSGAPGSNGAHGSPGS 426
>gi|410911398|ref|XP_003969177.1| PREDICTED: collagen alpha-1(XXII) chain-like [Takifugu rubripes]
Length = 1470
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 21/70 (30%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPG---------------RNGMDGIPGKDGLPGKD----- 67
G IG+ G G+PG PG G+PG +G+DG PGK GLPGKD
Sbjct: 550 KGNIGIQGEAGIPGMPGPRGVPGDAGIKGDKGTSGARGESGLDGSPGKPGLPGKDGLMGL 609
Query: 68 -GIPGTNGTK 76
G+PG G K
Sbjct: 610 AGVPGPTGIK 619
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPG 71
++ + G + S + G G G G+ G PG+DG+PG G GI G+ G+PG G+PG
Sbjct: 513 EKGESGESGSVGLPGPPGQKGEKGVGGIPGIDGLPGDKGNIGIQGEAGIPGMPGPRGVPG 572
Query: 72 TNGTKTDHYAMGADTKSFSDG 92
G K D GA +S DG
Sbjct: 573 DAGIKGDKGTSGARGESGLDG 593
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G IG G GLPG PGL G+PG G G PG G+ G G G G+
Sbjct: 1149 LPGLIGKQGEPGLPGNPGLRGLPGFKGHRGEPGAPGVKGLRGEKGEAGS 1197
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 26/50 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I G GL G G GEPGL G PG G+ G G G PG G+ G G K
Sbjct: 1143 IQGPAGLPGLIGKQGEPGLPGNPGLRGLPGFKGHRGEPGAPGVKGLRGEK 1192
>gi|402911085|ref|XP_003918173.1| PREDICTED: collagen alpha-6(IV) chain isoform 4 [Papio anubis]
Length = 1630
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G+ G G G PG PGL G PG G G+PG GLPGKDG+PGT G+ +
Sbjct: 684 GQPGSSGNKGKPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGTIGSPGLPGSK 743
Query: 83 GADTKSF 89
GA F
Sbjct: 744 GATGDIF 750
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG---KDGIPGTNGT 75
+G+ + SG G+ G+ GLPG PG G G G G G+ G PG K G+PG G
Sbjct: 805 VGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGL 864
Query: 76 KTDHYAMGADTKSFSDGV--LPSVQ 98
+ +G S GV LP++
Sbjct: 865 PGNPGLIGLKGSPGSPGVAGLPALS 889
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G G G PG PG G PG +G GI GK GLPG G PGT+G
Sbjct: 788 GLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSG 836
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 24/42 (57%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G PG PGL GIPG G+ GIPG G G G GT G K D
Sbjct: 902 GFPGIPGLPGIPGTRGLKGIPGSTGKMGPSGHAGTPGEKGDR 943
>gi|410060431|ref|XP_531500.4| PREDICTED: collagen alpha-1(XVIII) chain [Pan troglodytes]
Length = 1754
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G PG PGL G G G DG+PG GLPG++GI G G K D + G
Sbjct: 1057 GDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSQG 1102
>gi|40231526|gb|AAR83296.1| type XVIII collagen long variant [Homo sapiens]
Length = 1751
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 28/46 (60%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G PG PGL G G G DGIPG GLPG++GI G G K D + G
Sbjct: 1057 GDPGVPGLPGAKGEVGADGIPGFPGLPGREGIAGPQGPKGDRGSRG 1102
>gi|444730162|gb|ELW70553.1| Collagen alpha-1(IV) chain [Tupaia chinensis]
Length = 701
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
I G G G+DG G+PG+ G+PG G G PGKD G+ GIPGT GT
Sbjct: 91 ICGPPGKPGKDGENGQPGIPGLPGDPGYPGEPGKD---GEKGIPGTPGT 136
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G+ G DG +G PG PGL G PG G G G+ G+PG G PG G K +
Sbjct: 96 GKPGKDGENGQPGIPGLPGDPGYPGEPGKDGEKGIPGTPGTPGLPGPKGE 145
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G G G PG PG+ G+PG G G+PG G PG G PG G +
Sbjct: 318 LGSKGEKGEPGLPGIPGVPGPKGYQGLPGDPGQPGLTGQPGLPGPSAGY 366
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G+ G +G+ G+PG PG G PG G DG G G PG G+PG G D
Sbjct: 99 GKDGENGQPGIPGLPGDPGYPGEPGKDGEKGIPGTPGTPGLPGPKGEPGD 148
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPG----TNGTKTDHYA 81
G G G GLPG+PG G PG++G GIPG GLPG G PG G K D
Sbjct: 102 GENGQPGIPGLPGDPGYPGEPGKDGEKGIPGTPGTPGLPGPKGEPGDILTFPGMKGDKGE 161
Query: 82 MGA 84
MG+
Sbjct: 162 MGS 164
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGR------NGMDGIPGKDGLPGKDGIPGTNGTK 76
G G+ G G PG PG+ G PG+ NG GIPG G PG G PG +G K
Sbjct: 75 GDQGVPGERGPPGTPGICGPPGKPGKDGENGQPGIPGLPGDPGYPGEPGKDGEK 128
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
G G G GLPG PG+ G G G+ G PG+ GL G+ G+PG +
Sbjct: 319 GSKGEKGEPGLPGIPGVPGPKGYQGLPGDPGQPGLTGQPGLPGPS 363
>gi|34328045|ref|NP_031761.1| collagen alpha-4(IV) chain precursor [Mus musculus]
gi|81872762|sp|Q9QZR9.1|CO4A4_MOUSE RecName: Full=Collagen alpha-4(IV) chain; Flags: Precursor
gi|5739387|gb|AAD50450.1|AF169388_1 alpha 4 collagen IV [Mus musculus]
Length = 1682
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 25/40 (62%)
Query: 36 RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
DGLPG PGL G+PG G G PG+ G PG DG PG G
Sbjct: 887 EDGLPGLPGLKGLPGLPGFPGFPGERGKPGPDGEPGRKGE 926
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 28/57 (49%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+ G G +G G PG PG G G GIPG+ GLPG G PG G K MG
Sbjct: 797 LKGPKGREGSRGFPGIPGSPGHSCERGAPGIPGQPGLPGTPGDPGAPGWKGQPGDMG 853
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 30/57 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+ G GL G GLPG PG G G+ G DG PG+ G G+ G PG G + A G
Sbjct: 890 LPGLPGLKGLPGLPGFPGFPGERGKPGPDGEPGRKGEVGEKGWPGLKGDLGERGAKG 946
>gi|161484654|ref|NP_034061.2| collagen alpha-1(IV) chain precursor [Mus musculus]
gi|126302535|sp|P02463.4|CO4A1_MOUSE RecName: Full=Collagen alpha-1(IV) chain; Contains: RecName:
Full=Arresten; Flags: Precursor
gi|74181102|dbj|BAE27820.1| unnamed protein product [Mus musculus]
gi|74181221|dbj|BAE27863.1| unnamed protein product [Mus musculus]
gi|74188621|dbj|BAE28055.1| unnamed protein product [Mus musculus]
Length = 1669
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 37/76 (48%), Gaps = 15/76 (19%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G IG G GLPGE PGLDG+PG G G+PG + G PG DGIPG+
Sbjct: 1103 GNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 1162
Query: 74 GTKTDHYAMGADTKSF 89
G K + G F
Sbjct: 1163 GEKGEQGVPGRGFPGF 1178
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 33/65 (50%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ G T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G
Sbjct: 844 DKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGTPGLPG 903
Query: 75 TKTDH 79
K DH
Sbjct: 904 EKGDH 908
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ + G A + + G G G G G PG G+PG G G+PG DG+PG G G G
Sbjct: 1080 EKGEKGSAGTPGMPGSPGPRGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPG 1139
Query: 75 TKTDHYAMGADTKSFSDGV 93
T G + SDG+
Sbjct: 1140 TPGPTGPAGQKGEPGSDGI 1158
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMD--------GIPGKDGLPGKDGIPGTNGTK 76
+ G G GR G PG PG +G+PG G G+PG G PG GIPGT G K
Sbjct: 700 VDGLPGEIGRPGSPGRPGFNGLPGNPGPQGQKGEPGIGLPGLKGQPGLPGIPGTPGEK 757
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 26/45 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G G G DGLPGE G G PGR G +G+PG G G+ G PG
Sbjct: 691 FPGLPGPKGVDGLPGEIGRPGSPGRPGFNGLPGNPGPQGQKGEPG 735
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G G+PG G+K +
Sbjct: 824 IKGEKGFPGFPGLDMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGV 883
Query: 82 MGADTKSFSDG 92
MG + S G
Sbjct: 884 MGTPGQPGSPG 894
>gi|297304547|ref|XP_002806395.1| PREDICTED: collagen alpha-6(IV) chain [Macaca mulatta]
Length = 1630
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G+ G G G PG PGL G PG G G+PG GLPGKDG+PGT G+ +
Sbjct: 684 GQPGSSGNKGKPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGTIGSPGLPGSK 743
Query: 83 GADTKSF 89
GA F
Sbjct: 744 GATGDIF 750
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG---KDGIPGTNGT 75
+G+ + SG G+ G+ GLPG PG G G G G G+ G PG K G+PG G
Sbjct: 805 VGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGL 864
Query: 76 KTDHYAMGADTKSFSDGV--LPSVQ 98
+ +G S GV LP++
Sbjct: 865 PGNPGLIGLKGSPGSPGVAGLPALS 889
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G G G PG PG G PG +G GI GK GLPG G PGT+G
Sbjct: 788 GLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSG 836
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 24/42 (57%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G PG PGL GIPG G+ GIPG G G G GT G K D
Sbjct: 902 GFPGIPGLPGIPGTRGLKGIPGSTGKMGPSGHAGTPGEKGDR 943
>gi|556297|gb|AAA50292.1| alpha-1 type IV collagen [Mus musculus]
Length = 1669
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 37/76 (48%), Gaps = 15/76 (19%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G IG G GLPGE PGLDG+PG G G+PG + G PG DGIPG+
Sbjct: 1103 GNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 1162
Query: 74 GTKTDHYAMGADTKSF 89
G K + G F
Sbjct: 1163 GEKGEQGVPGRGFPGF 1178
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 33/65 (50%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ G T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G
Sbjct: 844 DKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGTPGLPG 903
Query: 75 TKTDH 79
K DH
Sbjct: 904 EKGDH 908
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ + G A + + G G G G G PG G+PG G G+PG DG+PG G G G
Sbjct: 1080 EKGEKGSAGTPGMPGSPGPRGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPG 1139
Query: 75 TKTDHYAMGADTKSFSDGV 93
T G + SDG+
Sbjct: 1140 TPGPTGPAGQKGEPGSDGI 1158
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMD--------GIPGKDGLPGKDGIPGTNGTK 76
+ G G GR G PG PG +G+PG G G+PG G PG GIPGT G K
Sbjct: 700 VDGLPGEIGRPGSPGRPGFNGLPGNPGPQGQKGEPGIGLPGLKGQPGLPGIPGTPGEK 757
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 26/45 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G G G DGLPGE G G PGR G +G+PG G G+ G PG
Sbjct: 691 FPGLPGPKGVDGLPGEIGRPGSPGRPGFNGLPGNPGPQGQKGEPG 735
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G G+PG G+K +
Sbjct: 824 IKGEKGFPGFPGLDMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGV 883
Query: 82 MGADTKSFSDG 92
MG + S G
Sbjct: 884 MGTPGQPGSPG 894
>gi|426376003|ref|XP_004054800.1| PREDICTED: collagen alpha-1(IV) chain [Gorilla gorilla gorilla]
Length = 1642
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G +G G GLPGE PGLDGIPG G G+PG + G PG DGIPG+
Sbjct: 1076 GSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 1135
Query: 74 GTKTD 78
G K +
Sbjct: 1136 GEKGE 1140
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G K DH
Sbjct: 827 TGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDH 881
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 37/84 (44%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G G G PG G+PG G G+PG DG+PG G G GT G
Sbjct: 1065 MPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKG 1124
Query: 87 KSFSDGVLPSVQRAIAAGLVIYRF 110
+ SDG+ S GL F
Sbjct: 1125 EPGSDGIPGSAGEKGEPGLPGRGF 1148
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G GIPG G+K +
Sbjct: 797 IKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGV 856
Query: 82 MGADTKSFSDGVL 94
MG + S G +
Sbjct: 857 MGTPGQPGSPGPV 869
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 25/43 (58%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G GL G PG G PG G+ G G GLPG DGIPG G
Sbjct: 1064 GMPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKG 1106
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G+ G+PG G PG G PG G + Y
Sbjct: 462 GFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEIY 507
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG------IPGT 72
IG S G G+ G+DG G+PG G G G+ G PG GLPG G +PGT
Sbjct: 935 IGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGT 994
Query: 73 NGTK 76
G K
Sbjct: 995 PGEK 998
>gi|156396416|ref|XP_001637389.1| predicted protein [Nematostella vectensis]
gi|156224501|gb|EDO45326.1| predicted protein [Nematostella vectensis]
Length = 253
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLP---GKDGIPGTNGTKTDHYAMGADT 86
+DG DGLP G+DG+P +G+DG+P G DGLP G DG+P +G G D
Sbjct: 116 VDGVDGLPMVDGVDGLPMVDGVDGLPMVDGVDGLPMVDGVDGLPMVDGVDGLPMVDGVDG 175
Query: 87 KSFSDGV--LPSVQRAIAAG 104
DGV LP V +A G
Sbjct: 176 LPMVDGVDGLPMVDGVVAHG 195
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLP---GKDGIPGTNGTKTDHYAMGADT 86
+DG DGLP G+D +P +G+DG+P G DGLP G DG+P +G G D
Sbjct: 98 VDGVDGLPMVDGVDALPMVDGVDGLPMVDGVDGLPMVDGVDGLPMVDGVDGLPMVDGVDG 157
Query: 87 KSFSDGV--LPSVQ 98
DGV LP V
Sbjct: 158 LPMVDGVDGLPMVD 171
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLP---GKDGIPGTNGTKTDHYAMGADT 86
+DG D LP G+DG+P +G+DG+P G DGLP G DG+P +G G D
Sbjct: 107 VDGVDALPMVDGVDGLPMVDGVDGLPMVDGVDGLPMVDGVDGLPMVDGVDGLPMVDGVDG 166
Query: 87 KSFSDGV--LPSVQ 98
DGV LP V
Sbjct: 167 LPMVDGVDGLPMVD 180
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKDGIPGTNGTKTDHYAMGADTKSF 89
+DG DGLP G+DG+P +G+DG+P G D LP D +P +G G D
Sbjct: 56 VDGVDGLPMVDGVDGLPMVDGVDGLPMVDGVDELPMVDELPMVDGVDGLPMVDGVDALPM 115
Query: 90 SDGV--LPSVQ 98
DGV LP V
Sbjct: 116 VDGVDGLPMVD 126
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDHYAMGADTKSF 89
+DG DGLP G+DG+P +G+D +P D LP G DG+P +G G D
Sbjct: 65 VDGVDGLPMVDGVDGLPMVDGVDELPMVDELPMVDGVDGLPMVDGVDALPMVDGVDGLPM 124
Query: 90 SDGV--LPSVQ 98
DGV LP V
Sbjct: 125 VDGVDGLPMVD 135
>gi|74138797|dbj|BAE27208.1| unnamed protein product [Mus musculus]
Length = 1669
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 37/76 (48%), Gaps = 15/76 (19%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G IG G GLPGE PGLDG+PG G G+PG + G PG DGIPG+
Sbjct: 1103 GNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 1162
Query: 74 GTKTDHYAMGADTKSF 89
G K + G F
Sbjct: 1163 GEKGEQGVPGRGFPGF 1178
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 33/65 (50%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ G T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G
Sbjct: 844 DKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGTPGLPG 903
Query: 75 TKTDH 79
K DH
Sbjct: 904 EKGDH 908
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ + G A + + G G G G G PG G+PG G G+PG DG+PG G G G
Sbjct: 1080 EKGEKGSAGTPGMPGSPGPRGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPG 1139
Query: 75 TKTDHYAMGADTKSFSDGV 93
T G + SDG+
Sbjct: 1140 TPGPTGPAGQKGEPGSDGI 1158
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMD--------GIPGKDGLPGKDGIPGTNGTK 76
+ G G GR G PG PG +G+PG G G+PG G PG GIPGT G K
Sbjct: 700 VDGLPGEIGRPGSPGRPGFNGLPGNPGPQGQKGEPGIGLPGLKGQPGLPGIPGTPGEK 757
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 26/45 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G G G DGLPGE G G PGR G +G+PG G G+ G PG
Sbjct: 691 FPGLPGPKGVDGLPGEIGRPGSPGRPGFNGLPGNPGPQGQKGEPG 735
Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G G+PG G+K +
Sbjct: 824 IKGEKGFPGFPGLDMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGV 883
Query: 82 MGADTKSFSDG 92
MG + S G
Sbjct: 884 MGTPGQPGSPG 894
>gi|60683012|ref|YP_213156.1| hypothetical protein BF3554 [Bacteroides fragilis NCTC 9343]
gi|60494446|emb|CAH09242.1| putative lipoprotein [Bacteroides fragilis NCTC 9343]
Length = 716
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G DG+DG+ G+ G DG G NG DG G +G G+DG+ G +G
Sbjct: 119 NGTDGTDGKDGVDGQNGADGQNGSNGTDGTDGHNGSDGQDGVNGEDG 165
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
++G G +G DG GE G DG G +G DG G DG G DG G+NGT
Sbjct: 97 LTGNKGENGNDGANGENGSDGANGTDGTDGKDGVDGQNGADGQNGSNGT 145
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G DG +G G G DG+ G+NG DG G +G G DG G++G
Sbjct: 110 NGENGSDGANGTDGTDGKDGVDGQNGADGQNGSNGTDGTDGHNGSDG 156
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+G G DG DG G G DG+ G +G DG+ G DG KDG+ G
Sbjct: 140 NGSNGTDGTDGHNGSDGQDGVNGEDGKDGVDGNDG---KDGVKG 180
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG---KDGLPGKDGIPGTNGTKTDHYAMG 83
+ G+ G DG++G G G DG G +G DG+ G KDG+ G DG G G D +G
Sbjct: 130 VDGQNGADGQNGSNGTDGTDGHNGSDGQDGVNGEDGKDGVDGNDGKDGVKGPAGDTPLLG 189
Query: 84 A 84
A
Sbjct: 190 A 190
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G +G +G G G DG G++G+DG G DG G +G GT+G
Sbjct: 104 NGNDGANGENGSDGANGTDGTDGKDGVDGQNGADGQNGSNGTDGTDG 150
>gi|21708149|gb|AAH33715.1| Similar to collagen, type XVIII, alpha 1, partial [Homo sapiens]
Length = 816
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 28/46 (60%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G PG PGL G G G DGIPG GLPG++GI G G K D + G
Sbjct: 122 GDPGVPGLPGAKGEVGADGIPGFPGLPGREGIAGPQGPKGDRGSRG 167
>gi|148229884|ref|NP_001089312.1| collagen, type IX, alpha 2 precursor [Xenopus laevis]
gi|61403352|gb|AAH91722.1| MGC98956 protein [Xenopus laevis]
Length = 686
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 30/48 (62%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+G G+DG+DG PG GL G PG+NG G PG GL G G PGT G
Sbjct: 298 NGLPGIDGKDGTPGLAGLKGSPGQNGTPGGPGHQGLAGLPGQPGTKGA 345
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD------GIPGTNGTK 76
G IG G +GLPG G DG PG G+ G PG++G PG G+PG GTK
Sbjct: 290 GAIGPKGNNGLPGIDGKDGTPGLAGLKGSPGQNGTPGGPGHQGLAGLPGQPGTK 343
>gi|148690109|gb|EDL22056.1| procollagen, type IV, alpha 1, isoform CRA_a [Mus musculus]
Length = 1141
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 37/76 (48%), Gaps = 15/76 (19%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G IG G GLPGE PGLDG+PG G G+PG + G PG DGIPG+
Sbjct: 575 GNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 634
Query: 74 GTKTDHYAMGADTKSF 89
G K + G F
Sbjct: 635 GEKGEQGVPGRGFPGF 650
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 33/65 (50%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ G T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G
Sbjct: 316 DKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGTPGLPG 375
Query: 75 TKTDH 79
K DH
Sbjct: 376 EKGDH 380
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ + G A + + G G G G G PG G+PG G G+PG DG+PG G G G
Sbjct: 552 EKGEKGSAGTPGMPGSPGPRGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPG 611
Query: 75 TKTDHYAMGADTKSFSDGV 93
T G + SDG+
Sbjct: 612 TPGPTGPAGQKGEPGSDGI 630
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMD--------GIPGKDGLPGKDGIPGTNGTK 76
+ G G GR G PG PG +G+PG G G+PG G PG GIPGT G K
Sbjct: 172 VDGLPGEIGRPGSPGRPGFNGLPGNPGPQGQKGEPGIGLPGLKGQPGLPGIPGTPGEK 229
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 26/45 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G G G DGLPGE G G PGR G +G+PG G G+ G PG
Sbjct: 163 FPGLPGPKGVDGLPGEIGRPGSPGRPGFNGLPGNPGPQGQKGEPG 207
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G G+PG G+K +
Sbjct: 296 IKGEKGFPGFPGLDMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGV 355
Query: 82 MGADTKSFSDG 92
MG + S G
Sbjct: 356 MGTPGQPGSPG 366
>gi|37543675|gb|AAM21933.1| type IV collagen [Bombyx mori]
Length = 887
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G +G+PG PG +G PG G G G G PG G+PG G + + +G
Sbjct: 589 LPGNDGLPGVNGVPGRPGNNGPPGEKGDRGFTGARGFPGPRGLPGIQGMEGERGEIGMTG 648
Query: 87 KSFSDGV--LPSVQRAIAAGLVIYR 109
+S G P V + G+++ R
Sbjct: 649 QSGLPGAPGAPCVSQDFLTGILLVR 673
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGR---NGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
I G GL G G G PGL G PG+ G+ G+PG+ G PG G+PG G K D
Sbjct: 410 TIKGEKGLPGTHGKHGRPGLPGAPGQKGDQGLPGLPGQLGRPGIPGLPGEKGQKGDQ 466
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
GR G+ G DG PG+PG G+PG G G G+ G PG+DG+ G G + A G
Sbjct: 263 GRPGVPGIDGAPGQPGDVGLPGITGEKGDKGELGFPGRDGLGGLKGDRGQPGAEG 317
>gi|444706107|gb|ELW47467.1| Collagen alpha-1(IV) chain [Tupaia chinensis]
Length = 1559
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G K DH
Sbjct: 850 TGQSGLPGLPGQQGTPGLPGFPGPKGEMGVMGTPGQPGSPGPVGTPGLPGEKGDH 904
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G PGRNG++G+PG G PG G PG G + Y
Sbjct: 485 GFPGQPGAKGDRGPPGRNGLEGLPGPQGAPGLMGQPGAKGEPGEIY 530
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 35 GRDGLPGEPGLDGIPGRNG-------MDGIPGKDGLPGKDGIPGTNGTK 76
G+ G PG PG G+PG G + G PG DGLPG G PG G +
Sbjct: 614 GQAGFPGSPGSPGLPGPKGEAGAVVPLPGPPGADGLPGSSGFPGPQGDR 662
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 18 DIGRAISTVISGRIGLDGRDG-------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIP 70
D G+A G GL G G LPG PG DG+PG +G G G G PG G P
Sbjct: 612 DKGQAGFPGSPGSPGLPGPKGEAGAVVPLPGPPGADGLPGSSGFPGPQGDRGFPGAPGRP 671
Query: 71 GTNGTK 76
G G K
Sbjct: 672 GQPGEK 677
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 27/47 (57%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
L G G PG PG G+PGR G+ G G GLPG G PG+ G K +
Sbjct: 535 LKGDKGDPGFPGQPGMPGRAGLPGRDGHPGLPGPKGSPGSVGLKGER 581
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G G+PG G K +
Sbjct: 820 IKGEKGFPGFPGLDMPGPKGDKGAQGLPGLTGQSGLPGLPGQQGTPGLPGFPGPKGEMGV 879
Query: 82 MGADTKSFSDGVL 94
MG + S G +
Sbjct: 880 MGTPGQPGSPGPV 892
>gi|397524284|ref|XP_003832130.1| PREDICTED: collagen alpha-1(IV) chain [Pan paniscus]
gi|410298984|gb|JAA28092.1| collagen, type IV, alpha 1 [Pan troglodytes]
gi|410339999|gb|JAA38946.1| collagen, type IV, alpha 1 [Pan troglodytes]
Length = 1669
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G +G G GLPGE PGLDGIPG G G+PG + G PG DGIPG+
Sbjct: 1103 GSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 1162
Query: 74 GTKTD 78
G K +
Sbjct: 1163 GEKGE 1167
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G K DH
Sbjct: 854 TGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDH 908
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 37/84 (44%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G G G PG G+PG G G+PG DG+PG G G GT G
Sbjct: 1092 MPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKG 1151
Query: 87 KSFSDGVLPSVQRAIAAGLVIYRF 110
+ SDG+ S GL F
Sbjct: 1152 EPGSDGIPGSAGEKGEPGLPGRGF 1175
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G GIPG G+K +
Sbjct: 824 IKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGV 883
Query: 82 MGADTKSFSDGVL 94
MG + S G +
Sbjct: 884 MGTPGQPGSPGPV 896
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G+ G+PG G PG G PG G + Y
Sbjct: 489 GFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEIY 534
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG------IPGT 72
IG S G G+ G+DG G+PG G G G+ G PG GLPG G +PGT
Sbjct: 962 IGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGT 1021
Query: 73 NGTK 76
G K
Sbjct: 1022 PGEK 1025
>gi|348553060|ref|XP_003462345.1| PREDICTED: collagen alpha-1(XXI) chain-like [Cavia porcellus]
Length = 964
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPGTNGTKTDH 79
GEPGL G+PG +G+ G PG GLPG+ G+PGT+G K D
Sbjct: 666 GEPGLQGLPGASGLKGDPGARGLPGEAGYAGLPGTHGKKGDK 707
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 28/50 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G+DG PG G+ G PG G GI G GLPG G PG +G K D
Sbjct: 467 GHPGQTGQDGKPGYQGISGSPGVPGSPGIQGARGLPGYKGEPGRDGQKGD 516
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 21 RAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ + +I G G G G PG PG G PGR+G DG+ G G G+ G PG G
Sbjct: 550 KGMLLLIQGAKGEKGNAGFPGLPGHPGEPGRHGKDGLMGSPGFKGEAGSPGMPG 603
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDH 79
+G G+ G+DG GEPG+ G PG G+ G G+ G P GK G PG G H
Sbjct: 596 AGSPGMPGQDGPQGEPGIPGFPGNQGLMGQKGEIGPPGPVGKKGAPGMPGLMGSH 650
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G+ G G+PG PG+ G G G G PG+DG G G+PG G
Sbjct: 479 GYQGISGSPGVPGSPGIQGARGLPGYKGEPGRDGQKGDRGLPGFPG 524
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G+ G GLP GEPG DG G G+ G PG G+PG G G G K
Sbjct: 489 VPGSPGIQGARGLPGYKGEPGRDGQKGDRGLPGFPGLHGMPGSKGKMGPKGDK 541
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ G G G+ G PG+ G PG G G+PG G PG+DG G G
Sbjct: 472 TGQDGKPGYQGISGSPGVPGSPGIQGARGLPGYKGEPGRDGQKGDRG 518
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
LPG PG DG+PG G G PG GL G+PG NG K +
Sbjct: 851 LPGFPGSDGVPGLMGTPGRPGARGL---KGLPGKNGAKGNQ 888
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ GL G G GE G G+PG++G G PG G PG G+ G G
Sbjct: 582 GKDGLMGSPGFKGEAGSPGMPGQDGPQGEPGIPGFPGNQGLMGQKG 627
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
PG PG G PG+ G DG PG G+ G G+PG+ G +
Sbjct: 460 PGLPGNPGHPGQTGQDGKPGYQGISGSPGVPGSPGIQ 496
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 27/50 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G GRDG G+ GL G PG +GM G GK G G G PG G K
Sbjct: 501 LPGYKGEPGRDGQKGDRGLPGFPGLHGMPGSKGKMGPKGDKGSPGFYGKK 550
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 23/46 (50%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G+DGL G PG G G GM G G G PG G PG G
Sbjct: 576 GEPGRHGKDGLMGSPGFKGEAGSPGMPGQDGPQGEPGIPGFPGNQG 621
>gi|153217501|gb|AAI51221.1| COL4A1 protein [Homo sapiens]
Length = 1669
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G +G G GLPGE PGLDGIPG G G+PG + G PG DGIPG+
Sbjct: 1103 GSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 1162
Query: 74 GTKTD 78
G K +
Sbjct: 1163 GEKGE 1167
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G K DH
Sbjct: 854 TGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDH 908
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 37/84 (44%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G G G PG G+PG G G+PG DG+PG G G GT G
Sbjct: 1092 MPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKG 1151
Query: 87 KSFSDGVLPSVQRAIAAGLVIYRF 110
+ SDG+ S GL F
Sbjct: 1152 EPGSDGIPGSAGEKGEPGLPGRGF 1175
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G+ G+PG G PG G PG G + Y
Sbjct: 489 GFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEFY 534
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G GIPG G+K +
Sbjct: 824 IKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGV 883
Query: 82 MGADTKSFSDGVL 94
MG + S G +
Sbjct: 884 MGTPGQPGSPGPV 896
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG------IPGT 72
IG S G G+ G+DG G+PG G G G+ G PG GLPG G +PGT
Sbjct: 962 IGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGT 1021
Query: 73 NGTK 76
G K
Sbjct: 1022 PGEK 1025
>gi|110629870|gb|ABG80451.1| fibrillar collagen, partial [Hydra vulgaris]
Length = 1374
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 37/64 (57%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GR G GL+G+DGL G+PG G PG +GM G+ G G G DG+PG +G K +
Sbjct: 865 GRPGQIGSKGFPGLNGKDGLNGKPGDKGFPGTDGMRGLQGIQGKDGTDGLPGKDGGKGEI 924
Query: 80 YAMG 83
MG
Sbjct: 925 GPMG 928
Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G GL GR+G PG+ G G PG NG DG+ GK PG G PGT+G + G D
Sbjct: 855 QGPPGLQGRNGRPGQIGSKGFPGLNGKDGLNGK---PGDKGFPGTDGMRGLQGIQGKD 909
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 35/66 (53%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR T SG G +G GLPG PG+ G+ G G+ G+PG+ G G G PG G K
Sbjct: 441 TGRDGKTGPSGLHGKNGDTGLPGLPGMQGVAGSTGVVGMPGEMGDNGDLGAPGLQGPKGV 500
Query: 79 HYAMGA 84
A GA
Sbjct: 501 QGATGA 506
>gi|449679146|ref|XP_002161962.2| PREDICTED: collagen alpha-1(XXIV) chain-like, partial [Hydra
magnipapillata]
Length = 1347
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 37/64 (57%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GR G GL+G+DGL G+PG G PG +GM G+ G G G DG+PG +G K +
Sbjct: 838 GRPGQIGSKGFPGLNGKDGLNGKPGDKGFPGTDGMRGLQGIQGKDGTDGLPGKDGGKGEI 897
Query: 80 YAMG 83
MG
Sbjct: 898 GPMG 901
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G GL GR+G PG+ G G PG NG DG+ GK PG G PGT+G + G D
Sbjct: 828 QGPPGLQGRNGRPGQIGSKGFPGLNGKDGLNGK---PGDKGFPGTDGMRGLQGIQGKD 882
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 35/66 (53%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR T SG G +G GLPG PG+ G+ G G+ G+PG+ G G G PG G K
Sbjct: 414 TGRDGKTGPSGLHGKNGDTGLPGLPGMQGVAGSTGVVGMPGEMGDNGDLGAPGLQGPKGV 473
Query: 79 HYAMGA 84
A GA
Sbjct: 474 QGATGA 479
>gi|180803|gb|AAA53098.1| alpha-1 type IV collagen [Homo sapiens]
gi|119629514|gb|EAX09109.1| collagen, type IV, alpha 1, isoform CRA_b [Homo sapiens]
Length = 1669
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G +G G GLPGE PGLDGIPG G G+PG + G PG DGIPG+
Sbjct: 1103 GSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 1162
Query: 74 GTKTD 78
G K +
Sbjct: 1163 GEKGE 1167
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G K DH
Sbjct: 854 TGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDH 908
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 37/84 (44%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G G G PG G+PG G G+PG DG+PG G G GT G
Sbjct: 1092 MPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKG 1151
Query: 87 KSFSDGVLPSVQRAIAAGLVIYRF 110
+ SDG+ S GL F
Sbjct: 1152 EPGSDGIPGSAGEKGEPGLPGRGF 1175
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G+ G+PG G PG G PG G + Y
Sbjct: 489 GFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEFY 534
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G GIPG G+K +
Sbjct: 824 IKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGV 883
Query: 82 MGADTKSFSDGVL 94
MG + S G +
Sbjct: 884 MGTPGQPGSPGPV 896
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG------IPGT 72
IG S G G+ G+DG G+PG G G G+ G PG GLPG G +PGT
Sbjct: 962 IGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGT 1021
Query: 73 NGTK 76
G K
Sbjct: 1022 PGEK 1025
>gi|313222452|emb|CBY39368.1| unnamed protein product [Oikopleura dioica]
Length = 319
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 27/42 (64%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GLPG PG DG+PGR+GMDG G+ G PG+ G G G H
Sbjct: 131 GLPGAPGKDGLPGRHGMDGKDGQQGPPGERGPRGYEGPPGQH 172
>gi|338729454|ref|XP_001492520.3| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-6(IV) chain-like
[Equus caballus]
Length = 1694
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 27 ISGRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G+ GL G G PG PGL G PG G G+PG GLPGKDG+PG G+
Sbjct: 689 TPGQPGLHGNKGEPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGKVGSPGLPG 748
Query: 81 AMGADTKSF 89
+ GA F
Sbjct: 749 SKGAPGDIF 757
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GLPG PG G+PG G+DG+PG+ GLPG GI
Sbjct: 625 GLPGSPGPRGLPGDQGLDGLPGQQGLPGLPGI 656
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
IGR +G GL G G PG G GIPG +G G+ G GLPG G+PG+ G D
Sbjct: 1017 IGRPGLPGPTGLRGLPGLKGSPGITGFPGIPGESGSQGLNGAPGLPGASGLPGSKG---D 1073
Query: 79 H 79
H
Sbjct: 1074 H 1074
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 29/51 (56%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
D+G + G++GL G GLPG PGL GI G G G+PG G PG G
Sbjct: 1107 DVGFPGNKGEDGKVGLSGDVGLPGSPGLPGIAGMRGNPGLPGTPGHPGATG 1157
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGKDGLPGKDGIPG 71
D+G S + G G+ G GLPG PG G PG G+ G PG GL G +G+PG
Sbjct: 1125 DVGLPGSPGLPGIAGMRGNPGLPGTPGHPGATGPLGPPGLVGIKGFPGLPGLHGLNGLPG 1184
Query: 72 TNGT 75
T GT
Sbjct: 1185 TKGT 1188
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 17/62 (27%)
Query: 27 ISGRIGLDGRDGLPGE---PGL--------------DGIPGRNGMDGIPGKDGLPGKDGI 69
+ G GL G+DGLPG+ PGL DG PG G+ G+PG G PG G
Sbjct: 725 LPGFPGLPGKDGLPGKVGSPGLPGSKGAPGDIFGAEDGAPGEQGLQGLPGDRGFPGDSGF 784
Query: 70 PG 71
PG
Sbjct: 785 PG 786
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 27/44 (61%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GL GR GLPG GL G+PG G GI G G+PG+ G G NG
Sbjct: 1015 GLIGRPGLPGPTGLRGLPGLKGSPGITGFPGIPGESGSQGLNGA 1058
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG-----KDGIPGTNGTK 76
G G G G PG PG DG+PG+ G G+PG G PG +DG PG G +
Sbjct: 716 FPGPRGEKGLPGFPGLPGKDGLPGKVGSPGLPGSKGAPGDIFGAEDGAPGEQGLQ 770
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIP------------GKDGLPGKDGIPGTNGTK 76
G G G GLPG+ GLDG+PG+ G+ G+P G G PG G PG G +
Sbjct: 625 GLPGSPGPRGLPGDQGLDGLPGQQGLPGLPGITLPCIIPGPYGPSGFPGTPGFPGPKGAR 684
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 35 GRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G PG PGL G+PG G+ GI GK GLPG G PGT+G
Sbjct: 801 GERGRPGIPGLMGQPGLPGAGGLFGIKGKPGLPGAPGFPGTSG 843
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G PG PGL GIPG +G+ G+PG G G G G+ G K D
Sbjct: 909 GFPGMPGLPGIPGASGLKGVPGSPGRVGPSGRTGSPGEKGDR 950
>gi|148536825|ref|NP_001836.2| collagen alpha-1(IV) chain preproprotein [Homo sapiens]
gi|125987809|sp|P02462.3|CO4A1_HUMAN RecName: Full=Collagen alpha-1(IV) chain; Contains: RecName:
Full=Arresten; Flags: Precursor
Length = 1669
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G +G G GLPGE PGLDGIPG G G+PG + G PG DGIPG+
Sbjct: 1103 GSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 1162
Query: 74 GTKTD 78
G K +
Sbjct: 1163 GEKGE 1167
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G K DH
Sbjct: 854 TGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDH 908
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 37/84 (44%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G G G PG G+PG G G+PG DG+PG G G GT G
Sbjct: 1092 MPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKG 1151
Query: 87 KSFSDGVLPSVQRAIAAGLVIYRF 110
+ SDG+ S GL F
Sbjct: 1152 EPGSDGIPGSAGEKGEPGLPGRGF 1175
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G+ G+PG G PG G PG G + Y
Sbjct: 489 GFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEFY 534
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G GIPG G+K +
Sbjct: 824 IKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGV 883
Query: 82 MGADTKSFSDGVL 94
MG + S G +
Sbjct: 884 MGTPGQPGSPGPV 896
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG------IPGT 72
IG S G G+ G+DG G+PG G G G+ G PG GLPG G +PGT
Sbjct: 962 IGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGT 1021
Query: 73 NGTK 76
G K
Sbjct: 1022 PGEK 1025
>gi|441614317|ref|XP_003270227.2| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(IV) chain [Nomascus
leucogenys]
Length = 1669
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G +G G GLPGE PGLDGIPG G G+PG + G PG DGIPG+
Sbjct: 1103 GSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 1162
Query: 74 GTKTD 78
G K +
Sbjct: 1163 GEKGE 1167
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G K DH
Sbjct: 854 TGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDH 908
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 37/84 (44%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G G G PG G+PG G G+PG DG+PG G G GT G
Sbjct: 1092 MPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKG 1151
Query: 87 KSFSDGVLPSVQRAIAAGLVIYRF 110
+ SDG+ S GL F
Sbjct: 1152 EPGSDGIPGSAGEKGEPGLPGRGF 1175
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G GIPG G+K +
Sbjct: 824 IKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGV 883
Query: 82 MGADTKSFSDGVL 94
MG + S G +
Sbjct: 884 MGTPGQPGSPGPV 896
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G+ G+PG G PG G PG G + Y
Sbjct: 489 GFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEIY 534
Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG------IPGT 72
IG S G G+ G+DG G+PG G G G+ G PG GLPG G +PGT
Sbjct: 962 IGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGT 1021
Query: 73 NGTK 76
G K
Sbjct: 1022 PGEK 1025
>gi|308500061|ref|XP_003112216.1| CRE-COL-58 protein [Caenorhabditis remanei]
gi|308268697|gb|EFP12650.1| CRE-COL-58 protein [Caenorhabditis remanei]
Length = 292
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 27/40 (67%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G PG++GIPGR G G PG+ GLPG G PGT+G
Sbjct: 163 GPPGRTGAPGINGIPGRPGQPGYPGEPGLPGPVGEPGTDG 202
>gi|402911079|ref|XP_003918170.1| PREDICTED: collagen alpha-6(IV) chain isoform 1 [Papio anubis]
Length = 1687
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G+ G G G PG PGL G PG G G+PG GLPGKDG+PGT G+ +
Sbjct: 684 GQPGSSGNKGKPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGTIGSPGLPGSK 743
Query: 83 GADTKSF 89
GA F
Sbjct: 744 GATGDIF 750
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG---KDGIPGTNGT 75
+G+ + SG G+ G+ GLPG PG G G G G G+ G PG K G+PG G
Sbjct: 805 VGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGL 864
Query: 76 KTDHYAMGADTKSFSDGV--LPSVQ 98
+ +G S GV LP++
Sbjct: 865 PGNPGLIGLKGSPGSPGVAGLPALS 889
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G G G PG PG G PG +G GI GK GLPG G PGT+G
Sbjct: 788 GLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSG 836
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 24/41 (58%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G PG PGL GIPG G+ GIPG G G G GT G K D
Sbjct: 902 GFPGIPGLPGIPGTRGLKGIPGSTGKMGPSGHAGTPGEKGD 942
>gi|395855170|ref|XP_003800043.1| PREDICTED: collagen alpha-1(IV) chain [Otolemur garnettii]
Length = 1669
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 20 GRAISTVISGRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKDGL---------P 64
G S G +G G GLPGE PGLDGIPG G G+PG+ G P
Sbjct: 1094 GSPGSKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGIKGEAGLPGQPGSTGPAGQKGEP 1153
Query: 65 GKDGIPGTNGTKTDHYAMGADTKSF 89
G DGIPG+ G K + G F
Sbjct: 1154 GSDGIPGSAGEKGEPGVPGRGFPGF 1178
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 27/49 (55%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
IGL G GLPG PG+ G PG G G PG G G G PG G + DH
Sbjct: 736 IGLPGLKGLPGLPGIPGTPGEKGNIGAPGVPGEQGALGPPGLQGIRGDH 784
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G GIPG G+K +
Sbjct: 824 IKGEKGFPGFPGLDMPGPKGDKGAQGLPGLTGQSGLPGLPGQQGTPGIPGFPGSKGEMGV 883
Query: 82 MGADTKSFSDGVL 94
MG + S G L
Sbjct: 884 MGTPGQPGSPGPL 896
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 29/54 (53%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G K D
Sbjct: 854 TGQSGLPGLPGQQGTPGIPGFPGSKGEMGVMGTPGQPGSPGPLGSPGLPGEKGD 907
>gi|402911081|ref|XP_003918171.1| PREDICTED: collagen alpha-6(IV) chain isoform 2 [Papio anubis]
Length = 1688
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G+ G G G PG PGL G PG G G+PG GLPGKDG+PGT G+ +
Sbjct: 685 GQPGSSGNKGKPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGTIGSPGLPGSK 744
Query: 83 GADTKSF 89
GA F
Sbjct: 745 GATGDIF 751
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG---KDGIPGTNGT 75
+G+ + SG G+ G+ GLPG PG G G G G G+ G PG K G+PG G
Sbjct: 806 VGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGL 865
Query: 76 KTDHYAMGADTKSFSDGV--LPSVQ 98
+ +G S GV LP++
Sbjct: 866 PGNPGLIGLKGSPGSPGVAGLPALS 890
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G G G PG PG G PG +G GI GK GLPG G PGT+G
Sbjct: 789 GLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSG 837
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 24/42 (57%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G PG PGL GIPG G+ GIPG G G G GT G K D
Sbjct: 903 GFPGIPGLPGIPGTRGLKGIPGSTGKMGPSGHAGTPGEKGDR 944
>gi|350420331|ref|XP_003492475.1| PREDICTED: collagen alpha-2(IV) chain-like, partial [Bombus
impatiens]
Length = 1867
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGM---DGIPGKDGLPGKDGIPGTNGT 75
G+ G G PG PG G PG +G G PGK G PG G PGT GT
Sbjct: 690 GIPGSPGAPGTPGSPGTPGTSGTASTSGTPGKPGTPGTAGTPGTPGT 736
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 28/56 (50%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G G G PG PG G PG G G PG G PG GIPG +GT + + GA
Sbjct: 765 GSPGTPGTPATPGIPGSPGAPGTPGSPGTPGTLGTPGTPGIPGNSGTPSIPGSPGA 820
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G G+PG PG G PG G G PG G PG IPG +GT + + GA
Sbjct: 393 GAPGTPATPGIPGSPGAPGTPGSPGTPGTPGTSGTPG---IPGNSGTPSIPGSTGAPETP 449
Query: 89 FSDGV 93
S G
Sbjct: 450 DSTGT 454
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 24/53 (45%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
ST G G G PG PG G PG G G G PGK G PGT GT
Sbjct: 679 STGTPGTPATPGIPGSPGAPGTPGSPGTPGTSGTASTSGTPGKPGTPGTAGTP 731
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 23/49 (46%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
SG + G G P P G PG GIPG G PG G PGT GT
Sbjct: 998 SGTPSIPGSPGAPDTPDSTGTPGTPATPGIPGSPGAPGTPGSPGTPGTS 1046
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G A ++ G+ G G G PG PG G PG G+ G PG +P G P T G+
Sbjct: 711 GTASTSGTPGKPGTPGTAGTPGTPGTAGTPGTPGISGNPGTSSVPTSPGAPHTPGSP 767
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 20/38 (52%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
PG PG G P G+ G PG G PG G PGT GT
Sbjct: 388 TPGSPGAPGTPATPGIPGSPGAPGTPGSPGTPGTPGTS 425
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLD------GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
ISG G G PG PG G P G+ G PG G PG G PGT GT
Sbjct: 745 ISGNPGTSSVPTSPGAPHTPGSPGTPGTPATPGIPGSPGAPGTPGSPGTPGTLGTP 800
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 22/49 (44%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
SG + G G P P G PG GIPG G PG G PGT T
Sbjct: 512 SGTPSIPGSPGAPDTPDSTGTPGTPATPGIPGSPGAPGTPGSPGTPSTS 560
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G G G G PG PG+ G PG + + PG PG G PGT T
Sbjct: 727 TAGTPGTPGTAGTPGTPGISGNPGTSSVPTSPGAPHTPGSPGTPGTPATP 776
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 22/49 (44%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
SG + G G P P G PG GIPG G PG G PGT T
Sbjct: 434 SGTPSIPGSTGAPETPDSTGTPGTPATPGIPGSPGAPGTPGSPGTPSTS 482
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 29 GRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDG---LPGKDGIPGTNGTK 76
G G G G PG PG GIPG +G IPG G PG G PGT T
Sbjct: 783 GAPGTPGSPGTPGTLGTPGTPGIPGNSGTPSIPGSPGAPDTPGATGTPGTPATP 836
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G G PG PG G PG+ G G G G PG G PGT G
Sbjct: 691 IPGSPGAPGTPGSPGTPGTSGTASTSGTPGKPGTPGTAGTPGTPGTAGTPGTPG 744
>gi|149057575|gb|EDM08818.1| procollagen, type IV, alpha 1, isoform CRA_a [Rattus norvegicus]
Length = 1098
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 33/65 (50%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ G T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G
Sbjct: 273 DKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGAPGLPG 332
Query: 75 TKTDH 79
K DH
Sbjct: 333 EKGDH 337
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 15/66 (22%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G IG G GLPGE PGLDG+PG G G+PG + G PG DGIPG+
Sbjct: 532 GNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 591
Query: 74 GTKTDH 79
G K +
Sbjct: 592 GEKGEQ 597
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 42/96 (43%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ + G A + + G G G G G PG G+PG G G+PG DG+PG G G G
Sbjct: 509 EKGEKGSAGTPGMPGSPGPRGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPG 568
Query: 75 TKTDHYAMGADTKSFSDGVLPSVQRAIAAGLVIYRF 110
T G + SDG+ S GL F
Sbjct: 569 TPGPTGPAGQKGEPGSDGIPGSAGEKGEQGLPGRGF 604
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMD--------GIPGKDGLPGKDGIPGTNGTK 76
+ G G GR G PG PG +G+PG G G+PG G PG GIPGT G K
Sbjct: 129 VDGLPGEIGRPGSPGRPGFNGLPGNPGPQGQKGEPGIGLPGLKGQPGLPGIPGTPGEK 186
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 27/50 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G GL G G PG G+DG+PG G G PG+ G G G PG G K +
Sbjct: 113 GAAGLPGSPGFPGPQGVDGLPGEIGRPGSPGRPGFNGLPGNPGPQGQKGE 162
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 25/42 (59%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
L G G G PG G PG G+DG+PG+ G PG G PG NG
Sbjct: 108 LPGPPGAAGLPGSPGFPGPQGVDGLPGEIGRPGSPGRPGFNG 149
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 26/43 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G G G DGLPGE G G PGR G +G+PG G G+ G PG
Sbjct: 122 GFPGPQGVDGLPGEIGRPGSPGRPGFNGLPGNPGPQGQKGEPG 164
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G G+PG G+K +
Sbjct: 253 VKGEKGFPGFPGLDMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGV 312
Query: 82 MGADTKSFSDG 92
MG + S G
Sbjct: 313 MGTPGQPGSPG 323
>gi|49898946|gb|AAH76669.1| col18a1-prov protein [Xenopus (Silurana) tropicalis]
Length = 1310
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 30 RIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
R G G GLPG EPG G+PG G G PG +G PG DG PG G K
Sbjct: 617 REGTQGVPGLPGAKGEPGHPGLPGVKGDSGFPGLEGRPGLDGFPGPEGLK 666
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
GL G G PG PGL G+ G +G ++G PG DG PG +G+ G G + + G D
Sbjct: 625 GLPGAKGEPGHPGLPGVKGDSGFPGLEGRPGLDGFPGPEGLKGEKGERGERGESGRD 681
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
T++ G +GR G+ G PG G G G++GIPG G+ G+ G PG MG
Sbjct: 704 TIVGAIPGPEGRQGVAGLPGPRGPKGEAGLNGIPGTFGVKGEKGEPGI--------IMGP 755
Query: 85 DTKSFSD 91
D+ ++D
Sbjct: 756 DSTIYTD 762
>gi|195034952|ref|XP_001989010.1| GH10272 [Drosophila grimshawi]
gi|193905010|gb|EDW03877.1| GH10272 [Drosophila grimshawi]
Length = 1936
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G+ G DG +G PG+ G+ G PG NG+DG GK G G+DGI GT G + H + G
Sbjct: 292 GKHGRDGVEGGPGDKGVKGAPGYNGLDGEHGKPGYVGEDGIDGTPGIQGPHGSPG 346
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 18/100 (18%)
Query: 4 VQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGL---------------PGEPGLDGI 48
+ G L+ E D + GR G GL+G DG+ PG PG DG
Sbjct: 601 IVGSLEAPEKGDAGEDGRRGEQGAQGDRGLNGWDGIKGAKGEAGIRGDFGEPGRPGEDGS 660
Query: 49 PGRNGMDGIPGKDGLPGK---DGIPGTNGTKTDHYAMGAD 85
PGR+G +GIPGK K G PG NG K + G++
Sbjct: 661 PGRDGPNGIPGKPAPTPKIYLAGSPGYNGKKGERGDFGSE 700
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 22 AISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ + G +G G GL G PGLDGIPG+ G G+ G+ G PG +G+ G G
Sbjct: 351 TLDISLPGTMGSQGDLGLRGPPGLDGIPGKQGRRGLQGRPGPPGDEGLSGNRG 403
>gi|305664475|ref|YP_003860762.1| hypothetical protein FB2170_16626 [Maribacter sp. HTCC2170]
gi|88708492|gb|EAR00728.1| hypothetical protein FB2170_16626 [Maribacter sp. HTCC2170]
Length = 1431
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 49/106 (46%), Gaps = 27/106 (25%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGE---------PGLDGIPGRNGMDGIPGKD---- 61
D+ D G A + I+G G+DG DG G+ G DGI G NG+DG G
Sbjct: 488 DKGDTGAAGADGINGTNGIDGTDGAKGDKGDKGDTGAAGADGINGTNGIDGAKGDKGDKG 547
Query: 62 -----GLPGKDGIPGTNGT---------KTDHYAMGADTKSFSDGV 93
G G DGI GTNGT K D A GAD + ++G+
Sbjct: 548 DTGDTGAAGADGINGTNGTDGAKGDKGDKGDTGAAGADGLNGTNGI 593
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 15 DRRDIGRAISTVISGRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
D D G A + I+G G+DG DG G+ G G G G DGI G +G+ G DG G
Sbjct: 455 DTGDTGAAGADGINGTNGIDGTNGIDGAKGDKGDKGDTGAAGADGINGTNGIDGTDGAKG 514
Query: 72 TNGTKTDHYAMGAD 85
G K D A GAD
Sbjct: 515 DKGDKGDTGAAGAD 528
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 15 DRRDIGRAISTVISGRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
D D G A + I+G G+DG DG G+ G G G G DGI G +G+ G DG G
Sbjct: 797 DTGDTGAAGADGINGTNGIDGTNGIDGAKGDKGDKGDTGAAGADGINGTNGIDGTDGAKG 856
Query: 72 TNGTKTDHYAMGAD 85
G K D A GAD
Sbjct: 857 DKGDKGDTGAAGAD 870
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 15 DRRDIGRAISTVISGRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
D D G A + I+G G+DG DG G+ G G G G DGI G +G+ G DG G
Sbjct: 884 DTGDTGAAGADGINGTNGIDGTNGIDGAKGDKGDKGDTGAAGADGINGTNGIDGTDGAKG 943
Query: 72 TNGTKTDHYAMGAD 85
G K D A GAD
Sbjct: 944 DKGDKGDTGAAGAD 957
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 32/58 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
I+G G+DG +G+ G G+DG G G G G DG G +GI GT G K D GA
Sbjct: 641 INGTNGIDGTNGIDGTNGIDGAKGDKGDTGAAGADGTNGTNGIDGTKGDKGDKGDTGA 698
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ D G A + I+G G+DG G G+ G G G NG +GI G +G+ DG G G
Sbjct: 860 DKGDTGAAGADGINGTNGIDGAKGDTGDTGAAGADGINGTNGIDGTNGI---DGAKGDKG 916
Query: 75 TKTDHYAMGAD 85
K D A GAD
Sbjct: 917 DKGDTGAAGAD 927
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 42/89 (47%), Gaps = 18/89 (20%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKDG------ 62
D+ D G A + +G G+DG G G+ G +GI G NG+DG G G
Sbjct: 665 DKGDTGAAGADGTNGTNGIDGTKGDKGDKGDTGAAGANGINGTNGIDGAKGDKGDKGDTG 724
Query: 63 LPGKDGIPGTNGT------KTDHYAMGAD 85
G DGI GTNGT K D A GAD
Sbjct: 725 ASGADGINGTNGTDGAKGDKGDTGAAGAD 753
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ D G A + I+G G DG G G+ G G G NG +GI G +G+ DG G G
Sbjct: 311 DKGDTGAAGADGINGTNGTDGAKGDTGDTGAAGADGINGTNGIDGTNGI---DGAKGDKG 367
Query: 75 TKTDHYAMGAD 85
K D A GAD
Sbjct: 368 DKGDTGAAGAD 378
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKD------G 62
D+ D G A + I+G G+DG G G+ G DG G NG+DG G G
Sbjct: 257 DKGDTGTAGADGINGTNGIDGAKGDKGDKGDTGAAGTDGTNGTNGIDGAKGDKGDKGDTG 316
Query: 63 LPGKDGIPGTNGT 75
G DGI GTNGT
Sbjct: 317 AAGADGINGTNGT 329
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKD------G 62
D D G A + I+G G DG G G+ G DG+ G NG+DG G G
Sbjct: 548 DTGDTGAAGADGINGTNGTDGAKGDKGDKGDTGAAGADGLNGTNGIDGAKGDKGDKGDTG 607
Query: 63 LPGKDGIPGTNGT 75
G DGI GTNGT
Sbjct: 608 AAGADGINGTNGT 620
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 48/106 (45%), Gaps = 27/106 (25%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGE---------PGLDGIPGRNGMD---------- 55
D+ D G A + I+G G+DG DG G+ G DGI G NG+D
Sbjct: 917 DKGDTGAAGADGINGTNGIDGTDGAKGDKGDKGDTGAAGADGINGTNGIDGAKGDKGDKG 976
Query: 56 --------GIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGV 93
GI G +GL G +GI GT+G K D G + +DG+
Sbjct: 977 DKGDTGTAGIDGINGLDGTNGIDGTDGAKGDKGDKGVTGAAGADGI 1022
>gi|2920535|gb|AAC39658.1| type XVIII collagen [Homo sapiens]
Length = 1516
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 28/46 (60%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G PG PGL G G G DGIPG GLPG++GI G G K D + G
Sbjct: 822 GDPGVPGLPGAKGEVGADGIPGFPGLPGREGIAGPQGPKGDRGSRG 867
>gi|109131876|ref|XP_001098448.1| PREDICTED: collagen alpha-6(IV) chain isoform 3 [Macaca mulatta]
Length = 1687
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G+ G G G PG PGL G PG G G+PG GLPGKDG+PGT G+ +
Sbjct: 684 GQPGSSGNKGKPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGTIGSPGLPGSK 743
Query: 83 GADTKSF 89
GA F
Sbjct: 744 GATGDIF 750
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG---KDGIPGTNGT 75
+G+ + SG G+ G+ GLPG PG G G G G G+ G PG K G+PG G
Sbjct: 805 VGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGL 864
Query: 76 KTDHYAMGADTKSFSDGV--LPSVQ 98
+ +G S GV LP++
Sbjct: 865 PGNPGLIGLKGSPGSPGVAGLPALS 889
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G G G PG PG G PG +G GI GK GLPG G PGT+G
Sbjct: 788 GLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSG 836
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 24/42 (57%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G PG PGL GIPG G+ GIPG G G G GT G K D
Sbjct: 902 GFPGIPGLPGIPGTRGLKGIPGSTGKMGPSGHAGTPGEKGDR 943
>gi|109131878|ref|XP_001098247.1| PREDICTED: collagen alpha-6(IV) chain isoform 1 [Macaca mulatta]
Length = 1675
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G+ G G G PG PGL G PG G G+PG GLPGKDG+PGT G+ +
Sbjct: 684 GQPGSSGNKGKPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGTIGSPGLPGSK 743
Query: 83 GADTKSF 89
GA F
Sbjct: 744 GATGDIF 750
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG---KDGIPGTNGT 75
+G+ + SG G+ G+ GLPG PG G G G G G+ G PG K G+PG G
Sbjct: 805 VGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGL 864
Query: 76 KTDHYAMGADTKSFSDGV--LPSVQ 98
+ +G S GV LP++
Sbjct: 865 PGNPGLIGLKGSPGSPGVAGLPALS 889
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G G G PG PG G PG +G GI GK GLPG G PGT+G
Sbjct: 788 GLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSG 836
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 24/42 (57%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G PG PGL GIPG G+ GIPG G G G GT G K D
Sbjct: 902 GFPGIPGLPGIPGTRGLKGIPGSTGKMGPSGHAGTPGEKGDR 943
>gi|40231527|gb|AAR83297.1| type XVIII collagen middle variant [Homo sapiens]
Length = 1516
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 28/46 (60%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G PG PGL G G G DGIPG GLPG++GI G G K D + G
Sbjct: 822 GDPGVPGLPGAKGEVGADGIPGFPGLPGREGIAGPQGPKGDRGSRG 867
>gi|428186449|gb|EKX55299.1| hypothetical protein GUITHDRAFT_131533 [Guillardia theta CCMP2712]
Length = 430
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G G G G+PG G+ G+PG+ GMDGI G+ G+PG G+ GT G + ++
Sbjct: 296 GYPGQPGIQGIPGRRGIPGMPGQRGMDGIVGEHGMPGPPGVAGTVGIQGNN 346
>gi|402911083|ref|XP_003918172.1| PREDICTED: collagen alpha-6(IV) chain isoform 3 [Papio anubis]
Length = 1663
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G+ G G G PG PGL G PG G G+PG GLPGKDG+PGT G+ +
Sbjct: 684 GQPGSSGNKGKPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGTIGSPGLPGSK 743
Query: 83 GADTKSF 89
GA F
Sbjct: 744 GATGDIF 750
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG---KDGIPGTNGT 75
+G+ + SG G+ G+ GLPG PG G G G G G+ G PG K G+PG G
Sbjct: 805 VGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGL 864
Query: 76 KTDHYAMGADTKSFSDGV--LPSVQ 98
+ +G S GV LP++
Sbjct: 865 PGNPGLIGLKGSPGSPGVAGLPALS 889
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G G G PG PG G PG +G GI GK GLPG G PGT+G
Sbjct: 788 GLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSG 836
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 24/42 (57%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G PG PGL GIPG G+ GIPG G G G GT G K D
Sbjct: 902 GFPGIPGLPGIPGTRGLKGIPGSTGKMGPSGHAGTPGEKGDR 943
>gi|297304545|ref|XP_002806394.1| PREDICTED: collagen alpha-6(IV) chain [Macaca mulatta]
Length = 1663
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G+ G G G PG PGL G PG G G+PG GLPGKDG+PGT G+ +
Sbjct: 684 GQPGSSGNKGKPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGTIGSPGLPGSK 743
Query: 83 GADTKSF 89
GA F
Sbjct: 744 GATGDIF 750
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG---KDGIPGTNGT 75
+G+ + SG G+ G+ GLPG PG G G G G G+ G PG K G+PG G
Sbjct: 805 VGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGL 864
Query: 76 KTDHYAMGADTKSFSDGV--LPSVQ 98
+ +G S GV LP++
Sbjct: 865 PGNPGLIGLKGSPGSPGVAGLPALS 889
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 24/42 (57%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G PG PGL GIPG G+ GIPG G G G GT G K D
Sbjct: 902 GFPGIPGLPGIPGTRGLKGIPGSTGKMGPSGHAGTPGEKGDR 943
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G G G PG PG G PG +G GI GK GLPG G PGT+G
Sbjct: 788 GLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSG 836
>gi|109131880|ref|XP_001098348.1| PREDICTED: collagen alpha-6(IV) chain isoform 2 [Macaca mulatta]
Length = 1688
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G+ G G G PG PGL G PG G G+PG GLPGKDG+PGT G+ +
Sbjct: 685 GQPGSSGNKGKPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGTIGSPGLPGSK 744
Query: 83 GADTKSF 89
GA F
Sbjct: 745 GATGDIF 751
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG---KDGIPGTNGT 75
+G+ + SG G+ G+ GLPG PG G G G G G+ G PG K G+PG G
Sbjct: 806 VGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGL 865
Query: 76 KTDHYAMGADTKSFSDGV--LPSVQ 98
+ +G S GV LP++
Sbjct: 866 PGNPGLIGLKGSPGSPGVAGLPALS 890
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 24/42 (57%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G PG PGL GIPG G+ GIPG G G G GT G K D
Sbjct: 903 GFPGIPGLPGIPGTRGLKGIPGSTGKMGPSGHAGTPGEKGDR 944
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G G G PG PG G PG +G GI GK GLPG G PGT+G
Sbjct: 789 GLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSG 837
>gi|45361317|ref|NP_989236.1| collagen, type XVIII, alpha 1 precursor [Xenopus (Silurana)
tropicalis]
gi|39645943|gb|AAH63929.1| collagen, type XVIII, alpha 1 [Xenopus (Silurana) tropicalis]
Length = 1301
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 30 RIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
R G G GLPG EPG G+PG G G PG +G PG DG PG G K
Sbjct: 617 REGTQGVPGLPGAKGEPGHPGLPGVKGDSGFPGLEGRPGLDGFPGPEGLK 666
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
GL G G PG PGL G+ G +G ++G PG DG PG +G+ G G + + G D
Sbjct: 625 GLPGAKGEPGHPGLPGVKGDSGFPGLEGRPGLDGFPGPEGLKGEKGERGERGESGRD 681
>gi|297274817|ref|XP_001088660.2| PREDICTED: collagen alpha-1(IV) chain [Macaca mulatta]
Length = 1607
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G +G G GLPGE PGLDGIPG G G+PG + G PG DGIPG+
Sbjct: 1103 GSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 1162
Query: 74 GTKTD 78
G K +
Sbjct: 1163 GEKGE 1167
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 34/65 (52%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ G T SG GL G+ G PG PG G G G+ G PG+ G PG G+PG G
Sbjct: 844 DKGSQGLPGVTGQSGLPGLPGQQGSPGIPGFPGSKGEMGVMGTPGQPGSPGPVGVPGLPG 903
Query: 75 TKTDH 79
K DH
Sbjct: 904 EKGDH 908
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 37/84 (44%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G G G PG G+PG G G+PG DG+PG G G GT G
Sbjct: 1092 MPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKG 1151
Query: 87 KSFSDGVLPSVQRAIAAGLVIYRF 110
+ SDG+ S GL F
Sbjct: 1152 EPGSDGIPGSAGEKGEPGLPGRGF 1175
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G GIPG G+K +
Sbjct: 824 IKGEKGFPGFPGLDMPGPKGDKGSQGLPGVTGQSGLPGLPGQQGSPGIPGFPGSKGEMGV 883
Query: 82 MGADTKSFSDGVL 94
MG + S G +
Sbjct: 884 MGTPGQPGSPGPV 896
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G+ G+PG G PG G PG G + Y
Sbjct: 489 GFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEIY 534
>gi|350595880|ref|XP_003484198.1| PREDICTED: collagen alpha-5(IV) chain-like, partial [Sus scrofa]
Length = 1041
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG+ GLPG+ G+PG G+K +
Sbjct: 612 PGKPGLPGNPGRDGEVGLPGEPGLPGQPGLPGIPGSKGE 650
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 38/80 (47%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ D G +SG G G G PG+PGL G PG G G G GLPGK G+ G G
Sbjct: 915 EKGDPGLPGIPGVSGPKGYQGLPGDPGQPGLRGQPGLPGPSGPKGNPGLPGKPGLTGPPG 974
Query: 75 TKTDHYAMGADTKSFSDGVL 94
K + MG + G L
Sbjct: 975 LKGNIGDMGFPGPQGAKGSL 994
>gi|241114825|ref|XP_002400454.1| alpha-1 collagen type III, putative [Ixodes scapularis]
gi|215493079|gb|EEC02720.1| alpha-1 collagen type III, putative [Ixodes scapularis]
Length = 634
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G +GL G G+PG PG G PG NG +G+PG +G G G+PG G K
Sbjct: 243 GFVGLPGDPGIPGTPGSKGSPGTNGRNGLPGDNGRAGTPGLPGLPGDK 290
>gi|426221663|ref|XP_004005028.1| PREDICTED: collagen alpha-3(IV) chain [Ovis aries]
Length = 1670
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNGTKTD 78
+G+ G PG+PGL G PGR G+DGIPG GLPG G P +G K D
Sbjct: 547 EGQVGAPGDPGLRGHPGRKGLDGIPGTPGVKGLPGPKGEPALSGEKGD 594
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 23/39 (58%)
Query: 36 RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G PGEPGL G PG++G G PG +G G G PG G
Sbjct: 286 EKGAPGEPGLQGKPGKDGAPGFPGTEGAKGDKGFPGLRG 324
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGKDGIPGTNG 74
+ G G G DG+PG PG+ G+PG G + G G GLPG GIPG+ G
Sbjct: 558 LRGHPGRKGLDGIPGTPGVKGLPGPKGEPALSGEKGDPGLPGDPGIPGSPG 608
>gi|375300302|gb|AFA46584.1| collagen alpha-1 IV chain precursor-like protein, partial
[Armillifer agkistrodontis]
Length = 348
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 35/72 (48%), Gaps = 15/72 (20%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---------------DGLPGKDGIPG 71
I G G G G+PG PGLDG+PG G G PG G PG DGIPG
Sbjct: 248 IPGSPGEQGEPGIPGTPGLDGLPGEKGEIGFPGIAGIKGDRGETGAFGIPGFPGLDGIPG 307
Query: 72 TNGTKTDHYAMG 83
G+K D ++G
Sbjct: 308 QKGSKGDKGSLG 319
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 36/66 (54%), Gaps = 15/66 (22%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP------------GKDGLP---GKDGIPGT 72
SG GL G G PG PGL+GIPG G+DG+P G GLP G+ GIPG+
Sbjct: 106 SGLRGLPGPKGYPGRPGLEGIPGNPGLDGLPGLKGERGEAGETGSPGLPGLIGQPGIPGS 165
Query: 73 NGTKTD 78
G K D
Sbjct: 166 EGPKGD 171
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 27 ISGRIGLDGRDGLPGE---------PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
+ G G G G+PGE PG G PGR G++GIPG GL DG+PG G +
Sbjct: 87 LKGEPGFPGIPGIPGERGPSGLRGLPGPKGYPGRPGLEGIPGNPGL---DGLPGLKGERG 143
Query: 78 DHYAMGA 84
+ G+
Sbjct: 144 EAGETGS 150
>gi|321461140|gb|EFX72175.1| hypothetical protein DAPPUDRAFT_8853 [Daphnia pulex]
Length = 72
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 28 SGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
+G G+ G DG P G PG DG PG G G PG DG PG DG G G K D+ + G+
Sbjct: 3 AGEPGIPGEDGKPGADGSPGYDGAPGEKGPSGPPGFDGAPGNDGKDGAPGEKGDNGSNGS 62
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 29 GRIGLDGR---DGLPGE------PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G DG DG PGE PG DG PG +G DG PG+ G G +G PG G
Sbjct: 13 GKPGADGSPGYDGAPGEKGPSGPPGFDGAPGNDGKDGAPGEKGDNGSNGSPGLTGA 68
>gi|355757610|gb|EHH61135.1| Collagen alpha-6(IV) chain, partial [Macaca fascicularis]
Length = 1666
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G+ G G G PG PGL G PG G G+PG GLPGKDG+PGT G+ +
Sbjct: 663 GQPGSSGNKGKPGSPGLVHLPELPGFPGPRGEKGLPGFTGLPGKDGLPGTIGSPGLPGSK 722
Query: 83 GADTKSF 89
GA F
Sbjct: 723 GATGDIF 729
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG---KDGIPGTNGT 75
+G+ + SG G+ G+ GLPG PG G G G G G+ G PG K G+PG G
Sbjct: 784 VGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGL 843
Query: 76 KTDHYAMGADTKSFSDGV--LPSVQ 98
+ +G S GV LP++
Sbjct: 844 PGNPGLIGLKGSPGSPGVAGLPALS 868
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G G G PG PG G PG +G GI GK GLPG G PGT+G
Sbjct: 767 GLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSG 815
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 24/42 (57%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G PG PGL GIPG G+ GIPG G G G GT G K D
Sbjct: 881 GFPGIPGLPGIPGTRGLKGIPGSTGKMGPSGHAGTPGEKGDR 922
>gi|25153132|ref|NP_741941.1| Protein MEC-5 [Caenorhabditis elegans]
gi|1016704|gb|AAA96504.1| MEC-5 [Caenorhabditis elegans]
gi|1016706|gb|AAA96505.1| MEC-5 precursor [Caenorhabditis elegans]
gi|22267955|emb|CAA92149.2| Protein MEC-5 [Caenorhabditis elegans]
Length = 327
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 9/61 (14%)
Query: 25 TVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPG------KDGLPGKDGIPGTNGT 75
T I G++G G G PG E G++G+PG NG+ G PG +DGLPG+ G PG G
Sbjct: 135 TGIPGKVGEPGSTGQPGSKGEKGMEGLPGTNGLPGAPGWPGSKGEDGLPGRPGSPGFPGK 194
Query: 76 K 76
K
Sbjct: 195 K 195
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G+ G+ G PG G G G GM+G+PG +GLPG G PG+ G
Sbjct: 131 LKGDTGIPGKVGEPGSTGQPGSKGEKGMEGLPGTNGLPGAPGWPGSKG 178
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 32/61 (52%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ D+G T + G G G G GE G GIPG G GIPGK G PG G PG+ G
Sbjct: 96 KGDMGPLGPTGMKGDKGSMGFPGQKGEGGNSGIPGLKGDTGIPGKVGEPGSTGQPGSKGE 155
Query: 76 K 76
K
Sbjct: 156 K 156
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK 66
+V + G+ S G GL G +GLPG PG G G +G+ G PG G PGK
Sbjct: 140 KVGEPGSTGQPGSKGEKGMEGLPGTNGLPGAPGWPGSKGEDGLPGRPGSPGFPGK 194
>gi|291227105|ref|XP_002733527.1| PREDICTED: fibrillar collagen [Saccoglossus kowalevskii]
Length = 2341
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 35/71 (49%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D +IG +G G G+ G+PG GL G PG+ G G PG G PGKDG PG G
Sbjct: 1382 DSGEIGPQGGKGTTGDPGRAGQQGMPGARGLTGSPGKEGPSGRPGTPGEPGKDGDPGPAG 1441
Query: 75 TKTDHYAMGAD 85
+ G D
Sbjct: 1442 ARGARGESGKD 1452
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 25/46 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G DG+DG PG PG G G G G+PG+ G G G PG G
Sbjct: 1807 GDAGKDGKDGEPGLPGPQGAQGSRGSMGMPGQKGESGPRGAPGPQG 1852
>gi|110611233|ref|NP_569712.2| collagen alpha-1(XVIII) chain isoform 2 precursor [Homo sapiens]
gi|62022601|gb|AAH63833.1| Collagen, type XVIII, alpha 1 [Homo sapiens]
gi|119629746|gb|EAX09341.1| collagen, type XVIII, alpha 1, isoform CRA_d [Homo sapiens]
gi|119629748|gb|EAX09343.1| collagen, type XVIII, alpha 1, isoform CRA_d [Homo sapiens]
gi|307685557|dbj|BAJ20709.1| collagen, type XVIII, alpha 1 [synthetic construct]
Length = 1336
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G PG PGL G G G DG+PG GLPG++GI G G K D + G
Sbjct: 642 GDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRG 687
>gi|225874|prf||1402236A collagen alpha1(IV)
Length = 1642
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G +G G GLPGE PGLDGIPG G G+PG + G PG DGIPG+
Sbjct: 1076 GSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 1135
Query: 74 GTKTD 78
G K +
Sbjct: 1136 GEKGE 1140
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G K DH
Sbjct: 827 TGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDH 881
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 37/84 (44%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G G G PG G+PG G G+PG DG+PG G G GT G
Sbjct: 1065 MPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKG 1124
Query: 87 KSFSDGVLPSVQRAIAAGLVIYRF 110
+ SDG+ S GL F
Sbjct: 1125 EPGSDGIPGSAGEKGEPGLPGRGF 1148
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G+ G+PG G PG G PG G + Y
Sbjct: 462 GFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEFY 507
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G GIPG G+K +
Sbjct: 797 IKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGV 856
Query: 82 MGADTKSFSDGVL 94
MG + S G +
Sbjct: 857 MGTPGQPGSPGPV 869
>gi|432848610|ref|XP_004066431.1| PREDICTED: collagen alpha-2(V) chain-like [Oryzias latipes]
Length = 1556
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 29/50 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I G G G G PG G DG PG+ G DG PG DG PG+ G PG+ G +
Sbjct: 304 IPGEAGEPGPMGEPGHRGPDGAPGKPGRDGEPGPDGAPGEPGNPGSQGPR 353
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNGT 75
SG G G G GEPG G PG G DG PGK DG PG DG PG G
Sbjct: 296 SGPTGGQGIPGEAGEPGPMGEPGHRGPDGAPGKPGRDGEPGPDGAPGEPGN 346
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 26/48 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G DG PG+PG DG PG +G G PG G G G PG G +
Sbjct: 315 GEPGHRGPDGAPGKPGRDGEPGPDGAPGEPGNPGSQGPRGFPGLPGNR 362
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGT 75
GR G G DG PGEPG G G G G+PG GL GK G PGT G
Sbjct: 330 GRDGEPGPDGAPGEPGNPGSQGPRGFPGLPGNRGLKGPKGKSGAPGTMGA 379
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G IG G G G PG G P G DG+PG+ G PG+ G+PG G K
Sbjct: 557 AGSIGPPGPAGETGAPGNRGFP---GSDGLPGQKGAPGERGLPGVGGAK 602
>gi|354479331|ref|XP_003501865.1| PREDICTED: collagen alpha-2(IX) chain [Cricetulus griseus]
Length = 688
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 32/57 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G G+DG+DG PG PG+ G PG+ G G PG GL G G PGT G D G
Sbjct: 298 TTGPPGIDGKDGTPGIPGMKGSPGQVGRPGSPGHQGLAGVPGQPGTKGGPGDKGEPG 354
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G GR G PG GL G+PG+ G G PG G PG+ G PGT+G G
Sbjct: 316 MKGSPGQVGRPGSPGHQGLAGVPGQPGTKGGPGDKGEPGQQGFPGTSGPPGKEGEPGPRG 375
Query: 87 KSFSDGVL 94
+ G++
Sbjct: 376 EIGPQGIM 383
>gi|296227162|ref|XP_002759255.1| PREDICTED: collagen alpha-1(XXII) chain-like [Callithrix jacchus]
Length = 1319
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDHYAMG 83
G G G DGLPG+PGL G G G+ G PG+ GLPG G PG G K D G
Sbjct: 480 KGEPGERGEDGLPGKPGLRGEVGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKG 538
>gi|170578841|ref|XP_001894564.1| Nematode cuticle collagen N-terminal domain containing protein
[Brugia malayi]
gi|158598767|gb|EDP36594.1| Nematode cuticle collagen N-terminal domain containing protein
[Brugia malayi]
Length = 311
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 22 AISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
A+ G G G G PG PG +G+PGRNG +G PG PG DG PG G
Sbjct: 233 AVPNGPQGYPGPRGEQGAPGNPGKNGLPGRNGAEGPPGN---PGCDGAPGLAGA 283
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT--KTDHYAM 82
G G G++GLPG G +G PG G DG PG G G+ GI G G+ + DH +
Sbjct: 248 QGAPGNPGKNGLPGRNGAEGPPGNPGCDGAPGLAGATGEPGIRGPQGSIGQCDHCPL 304
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 24/72 (33%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGI------------------------PGRNGMDGIPGKDG 62
+ G G G DGLPG+PG +G+ PG G G+ GK G
Sbjct: 129 LPGPDGQSGPDGLPGQPGRNGLDAPPPKQPERIVFCFECEKSEPGPPGEPGRKGLAGKPG 188
Query: 63 LPGKDGIPGTNG 74
LPG+DG PG G
Sbjct: 189 LPGRDGYPGLPG 200
>gi|355754805|gb|EHH58706.1| Collagen alpha-1(IV) chain, partial [Macaca fascicularis]
Length = 1645
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G +G G GLPGE PGLDGIPG G G+PG + G PG DGIPG+
Sbjct: 1079 GSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 1138
Query: 74 GTKTD 78
G K +
Sbjct: 1139 GEKGE 1143
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 34/65 (52%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ G T SG GL G+ G PG PG G G G+ G PG+ G PG G+PG G
Sbjct: 820 DKGSQGLPGVTGQSGLPGLPGQQGSPGIPGFPGSKGEMGVMGTPGQPGSPGPVGVPGLPG 879
Query: 75 TKTDH 79
K DH
Sbjct: 880 EKGDH 884
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 37/84 (44%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G G G PG G+PG G G+PG DG+PG G G GT G
Sbjct: 1068 MPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKG 1127
Query: 87 KSFSDGVLPSVQRAIAAGLVIYRF 110
+ SDG+ S GL F
Sbjct: 1128 EPGSDGIPGSAGEKGEPGLPGRGF 1151
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G GIPG G+K +
Sbjct: 800 IKGEKGFPGFPGLDMPGPKGDKGSQGLPGVTGQSGLPGLPGQQGSPGIPGFPGSKGEMGV 859
Query: 82 MGADTKSFSDGVL 94
MG + S G +
Sbjct: 860 MGTPGQPGSPGPV 872
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G+ G+PG G PG G PG G + Y
Sbjct: 465 GFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEIY 510
>gi|355701098|gb|EHH29119.1| Collagen alpha-1(IV) chain, partial [Macaca mulatta]
Length = 1645
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G +G G GLPGE PGLDGIPG G G+PG + G PG DGIPG+
Sbjct: 1079 GSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 1138
Query: 74 GTKTD 78
G K +
Sbjct: 1139 GEKGE 1143
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 34/65 (52%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ G T SG GL G+ G PG PG G G G+ G PG+ G PG G+PG G
Sbjct: 820 DKGSQGLPGVTGQSGLPGLPGQQGSPGIPGFPGSKGEMGVMGTPGQPGSPGPVGVPGLPG 879
Query: 75 TKTDH 79
K DH
Sbjct: 880 EKGDH 884
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 37/84 (44%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G G G PG G+PG G G+PG DG+PG G G GT G
Sbjct: 1068 MPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKG 1127
Query: 87 KSFSDGVLPSVQRAIAAGLVIYRF 110
+ SDG+ S GL F
Sbjct: 1128 EPGSDGIPGSAGEKGEPGLPGRGF 1151
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G GIPG G+K +
Sbjct: 800 IKGEKGFPGFPGLDMPGPKGDKGSQGLPGVTGQSGLPGLPGQQGSPGIPGFPGSKGEMGV 859
Query: 82 MGADTKSFSDGVL 94
MG + S G +
Sbjct: 860 MGTPGQPGSPGPV 872
Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G+ G+PG G PG G PG G + Y
Sbjct: 465 GFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEIY 510
>gi|297473342|ref|XP_002686588.1| PREDICTED: collagen alpha-2(IX) chain [Bos taurus]
gi|296489048|tpg|DAA31161.1| TPA: collagen, type IX, alpha 2 [Bos taurus]
Length = 736
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 31/53 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G G+DG+DG PG PG+ G G+ G G PG GL G G+PGT G D
Sbjct: 384 ATGPPGIDGKDGTPGTPGVKGSAGQAGRPGNPGHQGLAGVPGMPGTKGGPGDK 436
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G GR G PG GL G+PG G G PG G PG+ G PG +G
Sbjct: 402 VKGSAGQAGRPGNPGHQGLAGVPGMPGTKGGPGDKGEPGRQGFPGVSG 449
>gi|332023475|gb|EGI63718.1| Collagen alpha-1(XXI) chain [Acromyrmex echinatior]
Length = 876
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 9/58 (15%)
Query: 28 SGRIGLDGRDGLPGE---------PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G IGL G DGLPGE G G PG++G G+PG GLPG G PG++G +
Sbjct: 514 EGPIGLPGDDGLPGEKGEIGPMGPSGPSGNPGKDGYPGLPGPQGLPGPHGEPGSSGPR 571
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
SG GLDG G PG PG DG G+ G G G+ GL G G+PG +G+
Sbjct: 568 SGPRGLDGLAGKPGPPGSDGKSGQKGNKGQKGEQGLAGPRGLPGNSGS 615
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNG---------MDGIPGKDGLPGKDGIPGTNGTK 76
SG G G+DG PG PG G+PG +G +DG+ GK G PG DG G G K
Sbjct: 538 SGPSGNPGKDGYPGLPGPQGLPGPHGEPGSSGPRGLDGLAGKPGPPGSDGKSGQKGNK 595
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 33/60 (55%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ +IG + SG G DG GLPG GL G G G G G DGL GK G PG++G
Sbjct: 528 EKGEIGPMGPSGPSGNPGKDGYPGLPGPQGLPGPHGEPGSSGPRGLDGLAGKPGPPGSDG 587
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 30/53 (56%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ VISG G +G GLPG+ GL G G G G G G PGKDG PG G +
Sbjct: 504 NNVISGLPGPEGPIGLPGDDGLPGEKGEIGPMGPSGPSGNPGKDGYPGLPGPQ 556
>gi|110629866|gb|ABG80449.1| fibrillar collagen [Hydra vulgaris]
Length = 1476
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGT 75
IG + G +G G G+PG+PG G G G +G PG GLP GKDG PGT+G
Sbjct: 971 IGASGFPGTQGTVGTKGEPGVPGKPGFKGQKGSIGANGSPGPVGLPGKSGKDGAPGTDGK 1030
Query: 76 KTDHYAMGADTKSFSDGVL 94
+ +G S G L
Sbjct: 1031 NGEPGDIGPKGNSGEKGFL 1049
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 28 SGRIGLDGRDG---LPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPG 71
SGR G G+DG PGE G G PG NG G PGKD G PG+DGI G
Sbjct: 902 SGRPGPQGKDGPKGSPGETGHPGKPGENGAPGFPGKDGRNGEPGEDGISG 951
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG------------KDG 62
D+ + GR + G G+ G G G PGL G PG G DGIPG +G
Sbjct: 673 DQGNDGRQGEQGLRGPPGVKGAPGPRGAPGLVGEPGEQGSDGIPGYKGPSGPPGLPGDNG 732
Query: 63 LPGKDGIPGT---NGTKTDHYAMGADTKSFSDG 92
PG G+PG+ G K H A GA ++ +G
Sbjct: 733 QPGSSGLPGSKGPEGEKGQHGARGAKGQTGDEG 765
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 15 DRRDIGRAISTVISGRIG---LDGRDGLPG------EPGLDGIPGRNGMDGIPGKDGLPG 65
DR G A SG+ G + G DG PG E GL GIPG GM G PG G G
Sbjct: 544 DRGSPGPAGKPGTSGKQGARGIPGNDGRPGAMGPMGERGLPGIPGLQGMKGSPGLSGATG 603
Query: 66 KDGIPGTNGTKTDH 79
++G PG GT+ D
Sbjct: 604 ENGRPGDKGTQGDK 617
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPGTNGT 75
G+ G G DGR+G PGE G+ G+PG G G+PG+ G G+ G PGT GT
Sbjct: 924 GKPGENGAPGFPGKDGRNGEPGEDGISGLPGDIGPVGLPGQPGPQGRIGASGFPGTQGT 982
Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 28 SGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
SG IGL G GL G +PG G PG G G PGKDG PG+ G G +G + +
Sbjct: 629 SGPIGLKGERGLAGPTGQPGHQGPPGALGESGAPGKDGDPGQPGDQGNDGRQGEQ 683
>gi|355698241|gb|EHH28789.1| Collagen alpha-1(XXII) chain [Macaca mulatta]
Length = 1626
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDHYAMG 83
G DGLPG+PGL G G G+ G PG+ GLPG G PG G K D G
Sbjct: 774 GEDGLPGKPGLRGETGEQGLAGRPGQKGEAGLPGAPGFPGVRGEKGDQGEKG 825
>gi|341875906|gb|EGT31841.1| CBN-COL-65 protein [Caenorhabditis brenneri]
Length = 302
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 28/49 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G+DG PGE G G G G+ G PGKDG G DG+ G NG +
Sbjct: 214 EGPAGPAGKDGAPGEDGAPGAQGSEGIAGAPGKDGETGPDGVAGENGVE 262
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G+ G G DG PG G +GI G G DG G DG+ G++G+ G GT + T
Sbjct: 220 AGKDGAPGEDGAPGAQGSEGIAGAPGKDGETGPDGVAGENGVEGAPGTDAAYCPCPPRTV 279
Query: 88 SFSDGVLPSVQRA 100
+ + P +++
Sbjct: 280 GYGEVEQPQAEQS 292
>gi|428181138|gb|EKX50003.1| hypothetical protein GUITHDRAFT_104401 [Guillardia theta CCMP2712]
Length = 542
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 28 SGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G DG+DG+PG G DG PG NG DG PG G GK G PG +G +
Sbjct: 257 QGAAGRDGQDGMPGPIGAMGRDGTPGYNGKDGTPGMPGREGKPGRPGPDGFQ 308
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
+ G IG GRDG PG G DG PG G +G PG+ PG DG G G Y
Sbjct: 268 MPGPIGAMGRDGTPGYNGKDGTPGMPGREGKPGR---PGPDGFQGPPGKPAPAY 318
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 30 RIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNG 74
R G GRDG G PG G GR+G G GKD G+PG++G PG G
Sbjct: 256 RQGAAGRDGQDGMPGPIGAMGRDGTPGYNGKDGTPGMPGREGKPGRPG 303
>gi|426249952|ref|XP_004018710.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(VII) chain [Ovis
aries]
Length = 2811
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GLDGR GL G+PG G PG NG GK G PG+DG+PG G +
Sbjct: 1664 GPPGLDGRSGLDGKPGASGPPGPNGAT---GKAGDPGRDGLPGLRGEQ 1708
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK--DGI 69
E D + GR SG G +GRDG GE G G PG G G+PG+ G PG+ G+
Sbjct: 1737 EPGDPGEDGRKGEKGDSGAPGREGRDGPKGERGAPGSPGLQGPPGLPGQVGPPGQGFPGV 1796
Query: 70 PGTNGTKTDHYAMG 83
PG++G K D G
Sbjct: 1797 PGSSGPKGDRGETG 1810
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 33/72 (45%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R D G G G G GL G GL G G G GIPG+ G PGKDG PG
Sbjct: 2431 EKGPRGDSGEPGEKGTKGEPGDKGSAGLLGARGLTGPKGEPGAPGIPGEPGSPGKDGDPG 2490
Query: 72 TNGTKTDHYAMG 83
G K D MG
Sbjct: 2491 VRGDKGDIGFMG 2502
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
I G GLDG G LPG PGL G G G G+PG+ G PGK+G+
Sbjct: 2512 IKGACGLDGEKGDKGEAGLPGRPGLAGRKGELGEPGVPGQAGAPGKEGL 2560
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G GLPG PGL G PG+ G+ G+PG G G+ G PG G + +
Sbjct: 1913 GERGLPGPPGLAGEPGKPGIPGLPGPAGSVGEAGRPGERGERGEK 1957
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Query: 29 GRIGLDGRDGLPGEPGLDG---------IPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ GL+G++G PG+PG DG PGR G DG G+ G PG G+ G G
Sbjct: 1727 GKPGLNGKNGEPGDPGEDGRKGEKGDSGAPGREGRDGPKGERGAPGSPGLQGPPG 1781
>gi|402594866|gb|EJW88792.1| cuticular collagen Bmcol-2, partial [Wuchereria bancrofti]
Length = 150
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIP------GKDGLPGKDGIPGTNG 74
G GL G+ GLPG PG G PG G G P GKDG PGK G+PG+ G
Sbjct: 76 GPPGLVGQPGLPGRPGFRGFPGAPGTTGPPGQPGNAGKDGTPGKPGVPGSLG 127
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT--KTDHYAM 82
+ GR G G G PG G G PG G DG PGK G+PG G GT G DH
Sbjct: 86 LPGRPGFRGFPGAPGTTGPPGQPGNAGKDGTPGKPGVPGSLGPAGTYGITGTCDHCPQ 143
>gi|321470480|gb|EFX81456.1| hypothetical protein DAPPUDRAFT_188087 [Daphnia pulex]
Length = 400
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 41/82 (50%), Gaps = 22/82 (26%)
Query: 27 ISGRIGLDGRDGLPGEP----------------GLDGIPGRNGMDGIPGKDGLPGKDGIP 70
ISG G G+DGL G P G G+PG++G++GIPG G GKDG P
Sbjct: 193 ISGSPGAPGKDGLSGAPSKQAGPQGPIGPTGVNGEAGLPGKDGLNGIPGAPGKNGKDGAP 252
Query: 71 GTNGTKTDHYAMGADTKSFSDG 92
G+ G K D D KS +G
Sbjct: 253 GSTGPKGD------DGKSGENG 268
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGI---PGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G G++G GLPG+ GL+GI PG+NG DG PG G G DG G NG+
Sbjct: 220 GPTGVNGEAGLPGKDGLNGIPGAPGKNGKDGAPGSTGPKGDDGKSGENGS 269
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G+ T G G G G G PG +G PG G+ G G DG PG G+PG+NG+K +
Sbjct: 32 AGQKGETGDQGSTGAPGSTGPKGTPGSNGTPGTQGLTGARGNDGAPGARGLPGSNGSKGE 91
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 36/83 (43%)
Query: 10 VLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
V + + G ST G G G G G PG G+ G G DG PG GLPG +G
Sbjct: 29 VGPAGQKGETGDQGSTGAPGSTGPKGTPGSNGTPGTQGLTGARGNDGAPGARGLPGSNGS 88
Query: 70 PGTNGTKTDHYAMGADTKSFSDG 92
G G ++GA +DG
Sbjct: 89 KGEPGINGQPGSVGAPGAPGNDG 111
>gi|395516283|ref|XP_003762320.1| PREDICTED: collagen alpha-1(VII) chain [Sarcophilus harrisii]
Length = 2910
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G+ GL+GR+G PG+PG DG G G G G+ GLPG+ G+ G +G+ T+
Sbjct: 1849 GKPGLNGRNGEPGDPGEDGRKGDRGEAGARGEQGLPGERGLKGDSGSVTN 1898
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 27/44 (61%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G GR G PG PGL G PGR G G G+ GLPG+ G PG G+
Sbjct: 1254 GQPGRPGNPGSPGLAGSPGRPGSRGEAGEPGLPGQKGEPGKPGS 1297
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 24/46 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G DG PG PG G PG G G PG G G+ G+PG G
Sbjct: 1245 GERGFPGVDGQPGRPGNPGSPGLAGSPGRPGSRGEAGEPGLPGQKG 1290
>gi|321462287|gb|EFX73312.1| hypothetical protein DAPPUDRAFT_109961 [Daphnia pulex]
Length = 780
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNG 74
G G+DG+DG G PG G PG NG DG G+DG P G G PGT+G
Sbjct: 277 GANGMDGKDGTNGAPGPAGSPGTNGKDGQDGQDGQPGVAGPSGPPGTDG 325
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 23 ISTVISGRIGLDGRDGLPGEPGLDG------IPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I +++G G DG+DG G G+DG PG G G GKDG G+DG PG G
Sbjct: 259 IEWIVTGEKGTDGKDGRDGANGMDGKDGTNGAPGPAGSPGTNGKDGQDGQDGQPGVAGPS 318
Query: 77 TDHYAMGADTKSFSDGV 93
G D K DGV
Sbjct: 319 G---PPGTDGKDGKDGV 332
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
G G DG+DG G+PG+ G G G DG GKDG+ GKDG
Sbjct: 298 GTNGKDGQDGQDGQPGVAGPSGPPGTDGKDGKDGVDGKDG 337
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ L G G+PG G+DG+ GR+G D GKDG G G PGT G
Sbjct: 171 VNLAGPPGIPGVDGMDGVDGRDGKD---GKDGAQGPAGPPGTKG 211
>gi|291232210|ref|XP_002736052.1| PREDICTED: colmedin-like [Saccoglossus kowalevskii]
Length = 896
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 27/43 (62%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G G DG GLPG PGLDG G G G PGKDG G+DG+ G
Sbjct: 550 GETGKDGPQGLPGVPGLDGQKGDKGDKGEPGKDGKDGEDGMTG 592
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G DG+DG PG PG+ GI G G D G GLPG G+ G G K D G D K
Sbjct: 530 GEPGKDGKDGNPGSPGIPGI-GETGKD---GPQGLPGVPGLDGQKGDKGDKGEPGKDGKD 585
Query: 89 FSDGV 93
DG+
Sbjct: 586 GEDGM 590
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +GL G GLPG+ G+DG PG+ G G G DG G G+PG G
Sbjct: 411 GPMGLTGPKGLPGQDGVDGDPGQKGEKGEMGNDGEAGDIGLPGMKG 456
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 29/51 (56%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G IGL G G G PG GI G+ G DG+PG G G DG+ G G K D
Sbjct: 446 AGDIGLPGMKGEMGSPGERGIIGQPGSDGMPGVPGQKGNDGVMGDKGEKGD 496
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 32 GLDGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPG 65
G+DG DGLPG G G G N GMDGIPG GLPG
Sbjct: 323 GIDGNDGLPGVKGNTGDKGENGSRGMDGIPGVPGLPG 359
>gi|432914834|ref|XP_004079144.1| PREDICTED: collagen alpha-1(VI) chain-like [Oryzias latipes]
Length = 1023
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 27/48 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+ GLDG DG GE G G+PG G G GK G PG G PG G K
Sbjct: 323 GQSGLDGTDGRKGEAGFPGLPGCKGSPGADGKQGEPGPKGDPGPYGRK 370
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
GR G G +G+PG+PG G PG G +G PG +G G GI G G + GAD
Sbjct: 462 QGREGSAGENGVPGDPGKAGPPGYRGDEGPPGLEGPKGPQGIKGAPGDRGPIGERGAD 519
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G IG G DG+PG +G G NG G PG+ G PG+ G GT G K D
Sbjct: 511 GPIGERGADGIPG----NGTVGCNGFQGYPGQRGDPGQSGSSGTPGPKGD 556
>gi|410924343|ref|XP_003975641.1| PREDICTED: collagen alpha-2(IV) chain-like [Takifugu rubripes]
Length = 1389
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGR-----NGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
G+ G+ G+ GLPG+PGL G PG NG +G+PG G PG+ G PG G + A
Sbjct: 596 FPGQKGIKGQSGLPGQPGLRGDPGPDGASGNGPEGLPGITGPPGQIGDPGPEGARGSQGA 655
Query: 82 MGADTKSFSDGV--LPSVQRAIAA 103
G + G LP+ Q A+
Sbjct: 656 PGMNGDQGLRGPPGLPAPQEICAS 679
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 28 SGRIGLDGRDGLPGEPG----LDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
SG +G G G PG+ G +PG G G+PGK G PG DG+PGT G
Sbjct: 272 SGPVGERGHPGPPGQKGDKRESQKLPGLKGEQGVPGKTGRPGADGVPGTPG 322
>gi|332215868|ref|XP_003257064.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(VII) chain [Nomascus
leucogenys]
Length = 2944
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G G G G PGL G+PG G G IPG G PGKDG+PG G K D MG
Sbjct: 2563 GSKGEAGDKGSAGSPGLRGLPGPQGQPGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMG 2620
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 29/61 (47%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
S + G G G DG PG PG G PG G G+ G GLPG G PG G + G
Sbjct: 1291 SAIAKGERGFPGADGRPGSPGRPGNPGTPGAPGLKGSPGLPGPRGDPGEQGPRGPKGEPG 1350
Query: 84 A 84
A
Sbjct: 1351 A 1351
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G GLDGR GL G+PG PG +G +G GK G PG+DG+PG
Sbjct: 1773 GPPGLDGRSGLDGKPG---APGPSGPNGAAGKAGDPGRDGLPG 1812
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GLDG G PG PGL G G G G+PG+ G PGK+G+ G G +
Sbjct: 2630 VKGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDR 2685
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKDGIPG 71
G+ GL+G++G PG+PG DG G G G P G+DG G+ G PG
Sbjct: 1836 GKPGLNGKNGEPGDPGEDGRKGEKGDSGAPGREGRDGPKGEHGAPG 1881
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD--GIPGTNGTK 76
G G DG G PG PG G+PG G G PG G PG+ G+PG G K
Sbjct: 2263 GASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEK 2312
>gi|215274264|sp|P39060.5|COIA1_HUMAN RecName: Full=Collagen alpha-1(XVIII) chain; Contains: RecName:
Full=Endostatin; Flags: Precursor
Length = 1754
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G PG PGL G G G DG+PG GLPG++GI G G K D + G
Sbjct: 1057 GDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRG 1102
>gi|260791793|ref|XP_002590912.1| hypothetical protein BRAFLDRAFT_108765 [Branchiostoma floridae]
gi|229276111|gb|EEN46923.1| hypothetical protein BRAFLDRAFT_108765 [Branchiostoma floridae]
Length = 245
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G+ G +G+PG G+ G PG +G DG+ G G PG+ G PGT G K
Sbjct: 37 CCVRGPPGMPGTNGIPGGNGVPGSPGISGKDGLKGDRGKPGRPGKPGTKGLK 88
>gi|149069174|gb|EDM18615.1| procollagen, type IX, alpha 1 [Rattus norvegicus]
Length = 697
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 32/60 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G+DGRDG+PG PG G G+ G G G GLPG GIPG G + G K
Sbjct: 550 TGLPGVDGRDGIPGMPGTKGEAGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGNTGPPGK 609
>gi|192676|gb|AAA21834.1| alpha-1 type IX collagen [Mus musculus]
gi|744962|prf||2015346A collagen:SUBUNIT=alpha1:ISOTYPE=IX
Length = 921
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 33/60 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G+DGRDG+PG PG G G+ G G G GLPG GIPG G + GA K
Sbjct: 537 TGLPGVDGRDGIPGMPGTKGEAGKPGPPGDVGIAGLPGVPGIPGAKGVAGEKGNTGAPGK 596
>gi|391341640|ref|XP_003745135.1| PREDICTED: collagen alpha-1(II) chain-like [Metaseiulus
occidentalis]
Length = 1484
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G DG+ G PG+ GL G+PG G+ G+ G+ G PG DG PG G +
Sbjct: 573 VRGLPGADGKTGEPGQQGLQGLPGPTGLPGMKGEQGEPGLDGKPGAQGPQ 622
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G +G PG PGL G+ G G+ G+PGKDG+PG G+PG +G
Sbjct: 536 GPKGSTGDNGKPGLPGLQGLRGTPGLPGLPGKDGVPGVRGLPGADG 581
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G ST +G+ GL G GL G PGL G+PG+ DG+PG GLPG DG G G +
Sbjct: 535 MGPKGSTGDNGKPGLPGLQGLRGTPGLPGLPGK---DGVPGVRGLPGADGKTGEPGQQ 589
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I+G +G G G G+ G G+PG G+ G PG GLPGKDG+PG G
Sbjct: 528 IAGSLGPMGPKGSTGDNGKPGLPGLQGLRGTPGLPGLPGKDGVPGVRG 575
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G GL G GLPG PG DG+PG G+ G GK G PG+ G+ G G
Sbjct: 549 LPGLQGLRGTPGLPGLPGKDGVPGVRGLPGADGKTGEPGQQGLQGLPG 596
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 31/65 (47%), Gaps = 15/65 (23%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNG---------------MDGIPGKDGLPGKDGIPG 71
+ G GL G G GEPGLDG PG G M G+PGK G PG G PG
Sbjct: 594 LPGPTGLPGMKGEQGEPGLDGKPGAQGPQGPRGDTGKEGPMGMVGLPGKPGEPGLRGPPG 653
Query: 72 TNGTK 76
G++
Sbjct: 654 LQGSR 658
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 27/55 (49%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G+ G G+ GL G PG G+PG G G PG DG PG G G G MG
Sbjct: 581 GKTGEPGQQGLQGLPGPTGLPGMKGEQGEPGLDGKPGAQGPQGPRGDTGKEGPMG 635
>gi|339251926|ref|XP_003371186.1| cuticle collagen 1 [Trichinella spiralis]
gi|316968611|gb|EFV52869.1| cuticle collagen 1 [Trichinella spiralis]
Length = 324
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
G G+ G DG+ G PG G+PG +G++G+PG DG PG GI
Sbjct: 191 GPTGIPGEDGIHGLPGFPGLPGLSGIEGLPGVDGPPGDPGI 231
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 22 AISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPGTNGTKTD 78
A +GR G G G G+PG GIPG +G+ G+PG GLPG +G+PG +G D
Sbjct: 169 ACPVCDAGRPGDPGPAGPRGDPGPTGIPGEDGIHGLPGFPGLPGLSGIEGLPGVDGPPGD 228
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
D GR +G G G G+PGE G+ G+PG G+ G+ G +GLPG DG PG G
Sbjct: 174 DAGRPGDPGPAGPRGDPGPTGIPGEDGIHGLPGFPGLPGLSGIEGLPGVDGPPGDPGISA 233
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
PG PGL G PG++G G+PG GLP GIPG D ++
Sbjct: 126 PGNPGLPGKPGKHGKHGLPGTPGLP---GIPGKQSKFADCISI 165
>gi|201860274|ref|NP_001128481.1| collagen alpha-1(IV) chain precursor [Rattus norvegicus]
Length = 1669
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 15/66 (22%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G IG G GLPGE PGLDG+PG G G+PG + G PG DGIPG+
Sbjct: 1103 GNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 1162
Query: 74 GTKTDH 79
G K +
Sbjct: 1163 GEKGEQ 1168
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 33/65 (50%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ G T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G
Sbjct: 844 DKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGAPGLPG 903
Query: 75 TKTDH 79
K DH
Sbjct: 904 EKGDH 908
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 42/96 (43%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ + G A + + G G G G G PG G+PG G G+PG DG+PG G G G
Sbjct: 1080 EKGEKGSAGTPGMPGSPGPRGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPG 1139
Query: 75 TKTDHYAMGADTKSFSDGVLPSVQRAIAAGLVIYRF 110
T G + SDG+ S GL F
Sbjct: 1140 TPGPTGPAGQKGEPGSDGIPGSAGEKGEQGLPGRGF 1175
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMD--------GIPGKDGLPGKDGIPGTNGTK 76
+ G G GR G PG PG +G+PG G G+PG G PG GIPGT G K
Sbjct: 700 VDGLPGEIGRPGSPGRPGFNGLPGNPGPQGQKGEPGIGLPGLKGQPGLPGIPGTPGEK 757
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 26/45 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G G G DGLPGE G G PGR G +G+PG G G+ G PG
Sbjct: 691 FPGLPGPKGVDGLPGEIGRPGSPGRPGFNGLPGNPGPQGQKGEPG 735
>gi|402583312|gb|EJW77256.1| collagen alpha-1(IV) chain, partial [Wuchereria bancrofti]
Length = 722
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
+ + G + ++G G+ G DG+PG E G+ GIPG+ G DG PG G GKDG PG
Sbjct: 604 KGERGEEARSGVAGPPGMPGTDGIPGYRGEKGISGIPGKRGRDGAPGLPGPAGKDGYPGA 663
Query: 73 NGTK 76
G +
Sbjct: 664 KGER 667
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 32/52 (61%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ I G+ G DG GLPG G DG PG G G+ G G+PGKDGIPG G +
Sbjct: 637 SGIPGKRGRDGAPGLPGPAGKDGYPGAKGERGLSGFPGIPGKDGIPGYLGER 688
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
R +GR G G+ G DGLPG PG LDG+PGR G GI G G PG+ GIPG
Sbjct: 34 RSLVGRDGYNGAPGLKGMRGSDGLPGLPGSRGLDGLPGRIGEPGIVGYPGKPGQSGIPGL 93
Query: 73 NGTKTD 78
G D
Sbjct: 94 PGLLGD 99
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 18 DIGRAISTVISGRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G +SG GL G DG+PG+PG G+ G G+DG+PG G+ G+ G+PG +G
Sbjct: 254 EAGSPGENGVSGYPGLKGERGIDGMPGQPGFPGMSGERGLDGLPGLQGVDGEPGLPGVHG 313
Query: 75 TK 76
+
Sbjct: 314 LE 315
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+SG GLDG GL G G G+PG +G++G+PG G PG G+PGT G + + A
Sbjct: 287 MSGERGLDGLPGLQGVDGEPGLPGVHGLEGLPGLSGAPGFAGLPGTKGIRGEPGRF-AHP 345
Query: 87 KSFSDGVLPSVQRAIA 102
D LP Q +I
Sbjct: 346 GPPGDVGLPGSQGSIG 361
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 29/50 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GLDG G GEPG+ G PG+ G GIPG GL G DG PG G
Sbjct: 60 LPGSRGLDGLPGRIGEPGIVGYPGKPGQSGIPGLPGLLGDDGYPGIPGES 109
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 36/67 (53%), Gaps = 17/67 (25%)
Query: 29 GRIGLDGRDGLPG---EPGL--------------DGIPGRNGMDGIPGKDGLPGKDGIPG 71
G IGL G+DG+PG EPGL +G PGR+G+DG G GLPG G PG
Sbjct: 358 GSIGLPGQDGIPGTKGEPGLLGDSHPGLPGLQGAEGEPGRDGIDGAVGFPGLPGMIGYPG 417
Query: 72 TNGTKTD 78
G + D
Sbjct: 418 AKGEQGD 424
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
SG GL G G+ G PGLDG+ G+ G G+PGK G G+ G PG G K +
Sbjct: 446 SGLPGLPGIPGIQGPPGLDGMLGQKGHAGLPGKPGFDGQRGQPGEQGRKGE 496
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 17 RDIGRAI--STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
R+ GR I G G G GLPG PG+ G PG +GM G G GLPGK G G G
Sbjct: 427 RNGGRGFDGQPGIPGVKGESGLPGLPGIPGIQGPPGLDGMLGQKGHAGLPGKPGFDGQRG 486
Query: 75 TKTDHYAMGADTKSFSDGVL 94
+ G +S S G +
Sbjct: 487 QPGEQGRKGEIGQSGSPGSI 506
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
+SG G+ G+DG+PG G GI G G+ G PG GLP G+PG G K H+++
Sbjct: 669 LSGFPGIPGKDGIPGYLGERGISGVPGVPGYPGNVGLP---GLPGMPGQKGIHFSV 721
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
GR G G G+PG G +GIPGR+G+ GI G+ G+ G G+PG G + + G + S
Sbjct: 205 GRAGEAGNPGIPGLKGRNGIPGRDGLSGIKGERGVAGLPGLPGKVGAIGEAGSPGENGVS 264
Query: 89 FSDGV 93
G+
Sbjct: 265 GYPGL 269
>gi|344270374|ref|XP_003407020.1| PREDICTED: collagen alpha-2(I) chain-like [Loxodonta africana]
Length = 1679
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G PG++G PG G DG PG DG PG+DG+PG G +
Sbjct: 1226 GSPGVNGAPGEAGRDGNPGSDGPPGRDGLPGHKGER 1261
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGT 75
GR + G G G G PG PG GI G NG+DG+ G+ G P G+ G PG NGT
Sbjct: 464 GRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGT 522
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G DG G PG PG G+ G G G PG GLPG GI G NG
Sbjct: 452 GKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNG 497
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 24 STVISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
S ++G G GRDG PG PG DG+PG G G PG G G G PG G
Sbjct: 1227 SPGVNGAPGEAGRDGNPGSDGPPGRDGLPGHKGERGYPGNAGPVGTAGAPGPQG 1280
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDG 68
I G GLDG G PG PG+ G PG G +G PG+ GLPG+ G
Sbjct: 492 IRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQIGARGLPGERG 536
>gi|301780422|ref|XP_002925627.1| PREDICTED: collagen alpha-6(IV) chain-like [Ailuropoda melanoleuca]
Length = 1754
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 27 ISGRIGLDGRDGLPGEPG------LDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G+ GL G G PG PG L G PG G G+PG GLPGKDG+PG G+
Sbjct: 683 TPGQPGLRGNKGEPGSPGSVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGKLGSPGLPG 742
Query: 81 AMGADTKSF 89
+ GA F
Sbjct: 743 SKGAPGDIF 751
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 33/56 (58%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGRA +G+ GL G G PG G GIPG +G G+ G GLPG G+PG+ G
Sbjct: 1011 IGRAGLPGSTGQRGLPGLKGSPGITGFPGIPGESGSQGLNGAPGLPGTSGLPGSKG 1066
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 18/75 (24%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKD------------ 61
G A + +G+ GL G GLPG PGL G+PG G+ G+PG
Sbjct: 846 GEAGAPSSAGKRGLPGLKGLPGSPGLVGFLGSSGLPGNTGLPGLPGPKGEKGSFGLAGFP 905
Query: 62 GLPGKDGIPGTNGTK 76
G+PG GIPG +G K
Sbjct: 906 GMPGLPGIPGASGLK 920
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GLPG PG G PG G++G+PG+ GLPG GI
Sbjct: 619 GLPGSPGPRGFPGDQGINGLPGQQGLPGLPGI 650
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 30/57 (52%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+G S G +G+ G G PG PGL GI G G G PG G PG G G++G
Sbjct: 1101 DVGFPGSKGEDGNVGISGDVGFPGSPGLPGIAGMRGNPGFPGSPGHPGATGPLGSSG 1157
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
+G S + G G DG +GLPG PG G PG G+ G PG +G PGK G
Sbjct: 1400 VGFQGSKGLPGIPGKDGLNGLPGPPGALGDPGLPGLQGPPGFEGAPGKKG 1449
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 27/48 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GR GL G G G PGL G PG G GIPG+ G G +G PG GT
Sbjct: 1012 GRAGLPGSTGQRGLPGLKGSPGITGFPGIPGESGSQGLNGAPGLPGTS 1059
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
++G +G+ G G G GL GIPG++G++G+PG G G G+PG G A G
Sbjct: 1390 LTGDLGVQGPVGFQGSKGLPGIPGKDGLNGLPGPPGALGDPGLPGLQGPPGFEGAPG 1446
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 27/53 (50%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
G G G G PG PG DG+ G G G+PG G PG G PG G + + A
Sbjct: 798 GSPGTPGHMGQPGSPGPDGLFGVKGKPGLPGAPGFPGPSGHPGKKGVRGEAGA 850
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 29 GRIGLDGRDGLP------GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G+ G+ G G P G PGL G+PG G+ G G GLPG G+PG G K + +
Sbjct: 840 GKKGVRGEAGAPSSAGKRGLPGLKGLPGSPGLVGFLGSSGLPGNTGLPGLPGPKGEKGSF 899
Query: 83 G 83
G
Sbjct: 900 G 900
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 17/62 (27%)
Query: 27 ISGRIGLDGRDGLPGE---PGL--------------DGIPGRNGMDGIPGKDGLPGKDGI 69
+ G GL G+DGLPG+ PGL +G PG G+ G+PG G+PG G+
Sbjct: 719 LPGFPGLPGKDGLPGKLGSPGLPGSKGAPGDIFGAENGAPGEQGLQGLPGDRGVPGDSGL 778
Query: 70 PG 71
PG
Sbjct: 779 PG 780
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G +G G GLPG PG DG+ PG G G+PG G PG +G PG G
Sbjct: 1396 VQGPVGFQGSKGLPGIPGKDGLNGLPGPPGALGDPGLPGLQGPPGFEGAPGKKG 1449
>gi|443691690|gb|ELT93472.1| hypothetical protein CAPTEDRAFT_111571, partial [Capitella teleta]
Length = 369
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR+ +T +SG G GRDG G G DG G+ G G+ G DG G+ G G NG
Sbjct: 216 GRSGATGLSGETGATGRDGRTGATGTDGRDGQTGATGLTGADGRDGQTGATGRNG 270
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 26/47 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G+DGRDG G G DG GR G G G+DG G G G NG
Sbjct: 38 TGATGVDGRDGQTGATGRDGQDGRTGATGADGRDGAKGDTGATGQNG 84
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 30/57 (52%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR T +GR G GRDG G G G GR+G G+ G+ G G+DG G GT
Sbjct: 185 TGRNGQTGATGREGATGRDGQTGATGSSGRDGRSGATGLSGETGATGRDGRTGATGT 241
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ +T +G+ G GRDG+ G G G+ GR+G G G+DG G+ G G +G
Sbjct: 15 GQTGATGQNGQTGATGRDGIDGRTGATGVDGRDGQTGATGRDGQDGRTGATGADG 69
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 28 SGRIGLDGRDGLPGEPGLDG------IPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G G+DGRDG+ G G+ G GRNG G G++G G+DG G G+
Sbjct: 158 TGATGVDGRDGVTGSTGVSGRDGQTGATGRNGQTGATGREGATGRDGQTGATGSS 212
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G+ +T SGR G G GL GE G G GR G G G+DG G G+ G +G
Sbjct: 204 GQTGATGSSGRDGRSGATGLSGETGATGRDGRTGATGTDGRDGQTGATGLTGADGRDGQT 263
Query: 80 YAMGADTKSFS---DGVLPSVQRAIAAG 104
A G + ++ + DG S R+ A G
Sbjct: 264 GATGRNGQTGATGRDGQTGSTGRSGATG 291
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGKDGLPGKDGIPGTN 73
GR T +GR G DGR G G G DG G+NG+ G G+DG+ G+ G G+
Sbjct: 45 GRDGQTGATGRDGQDGRTGATGADGRDGAKGDTGATGQNGLTGATGQDGIDGRTGATGST 104
Query: 74 G 74
G
Sbjct: 105 G 105
>gi|358411627|ref|XP_582312.5| PREDICTED: collagen alpha-2(IX) chain [Bos taurus]
Length = 774
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 31/53 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G G+DG+DG PG PG+ G G+ G G PG GL G G+PGT G D
Sbjct: 384 ATGPPGIDGKDGTPGTPGVKGSAGQAGRPGNPGHQGLAGVPGMPGTKGGPGDK 436
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G GR G PG GL G+PG G G PG G PG+ G PG +G
Sbjct: 402 VKGSAGQAGRPGNPGHQGLAGVPGMPGTKGGPGDKGEPGRQGFPGVSG 449
>gi|449280419|gb|EMC87737.1| Collagen alpha-2(I) chain [Columba livia]
Length = 1363
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
++G G G G G PG +G PG G DG PG DG PG+DG PG G +
Sbjct: 898 VAGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDGPPGRDGAPGFKGER 947
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTK 76
GR ++G G G G PG PG GI G NG+DG G+ G P G+ G PG NGT
Sbjct: 150 GRPGERGVAGPQGARGFPGTPGLPGFKGIRGHNGLDGQKGQPGTPGTKGEPGAPGENGTP 209
Query: 77 TDHYAMG 83
A G
Sbjct: 210 GQPGARG 216
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
SG +G G +G PGE G DG PG DG PG+DG PG G G G+ A+GA
Sbjct: 908 SGPVGSPGPNGAPGEAGRDGNPGN---DGPPGRDGAPGFKGERGAPGSPGPSGALGA 961
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G GLDG+ G PG PG G PG G +G PG+ PG G+PG G
Sbjct: 178 IRGHNGLDGQKGQPGTPGTKGEPGAPGENGTPGQ---PGARGLPGERG 222
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI------------PGTNGTKTDHYA 81
DG G PG PG G+ G G G PG GLPG GI PGT GTK + A
Sbjct: 143 DGHPGKPGRPGERGVAGPQGARGFPGTPGLPGFKGIRGHNGLDGQKGQPGTPGTKGEPGA 202
Query: 82 MGAD 85
G +
Sbjct: 203 PGEN 206
>gi|47214275|emb|CAG01332.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1655
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 33/63 (52%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
G G DG GEPG G G G G+PG GL G+ G G G++ + A GA S +
Sbjct: 246 GEPGPDGAGGEPGFSGSAGSRGFPGLPGHPGLKGQKGAAGLPGSRGQNGATGAKGASGTP 305
Query: 92 GVL 94
GVL
Sbjct: 306 GVL 308
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G PG+ G DG PG+ G DG PG DG G+ G G+ G++
Sbjct: 225 GFQGEPGQRGPDGAPGKPGPDGEPGPDGAGGEPGFSGSAGSR 266
>gi|327278773|ref|XP_003224135.1| PREDICTED: pulmonary surfactant-associated protein A1-like
[Anolis carolinensis]
Length = 251
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 19/74 (25%)
Query: 22 AISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMD-------------------GIPGKDG 62
A+S+ G G G+PG PG +G+PGR+G D G+PG+DG
Sbjct: 21 ALSSPCLGEDKCAGVPGIPGTPGANGMPGRDGRDGMKGDPGPPGPMGPPNGLSGVPGRDG 80
Query: 63 LPGKDGIPGTNGTK 76
LPG G+ G G K
Sbjct: 81 LPGPPGLKGEPGEK 94
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 19/73 (26%)
Query: 23 ISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD-------------------GL 63
+S +I+ G D G PG+ G PG NGM G G+D G+
Sbjct: 16 VSVIIALSSPCLGEDKCAGVPGIPGTPGANGMPGRDGRDGMKGDPGPPGPMGPPNGLSGV 75
Query: 64 PGKDGIPGTNGTK 76
PG+DG+PG G K
Sbjct: 76 PGRDGLPGPPGLK 88
>gi|119623089|gb|EAX02684.1| collagen, type IV, alpha 5 (Alport syndrome), isoform CRA_b [Homo
sapiens]
Length = 1690
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 27 ISGRIGLDGRDGLPG---------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G+ GLPG PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1285 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1341
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG G+ G G GLPG G PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKG 1116
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G G+PG+ G +
Sbjct: 1303 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPE 1352
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G PG+PGL G+PG G G PG G PG+ PG NG K D
Sbjct: 1285 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGR---PGLNGMKGD 1327
>gi|109009549|ref|XP_001109249.1| PREDICTED: collagen alpha-1(XXIV) chain-like isoform 2 [Macaca
mulatta]
Length = 1714
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
SG+ G+ G GLPG G+ G G +G+ G PGK G PGK G+PG G+
Sbjct: 1275 SGKAGIPGLQGLPGPKGIQGYHGADGILGNPGKVGPPGKQGLPGIRGS 1322
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTKTD 78
G +G G G PGEPGL G PG G +G+ GKDGL G G+PG +G K D
Sbjct: 1028 KGDVGPAGSVGEPGEPGLRGEPGAPGEEGLQGKDGLKGASGGRGLPGEDGEKGD 1081
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GR GL G G PG G G+PG G+ G G+ GLPG+ GI GT G +
Sbjct: 1324 GRTGLAGAPGPPGVKGSSGLPGSPGIQGPKGEQGLPGQPGIQGTRGHR 1371
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G++G G+ GLPG + G PGR G+ G PG G+ G G+PG+ G +
Sbjct: 1306 GKVGPPGKQGLPG---IRGSPGRTGLAGAPGPPGVKGSSGLPGSPGIQ 1350
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPG 71
D+G A S G GL G G PGE GL DG+ G +G G+PG+DG G G+PG
Sbjct: 1030 DVGPAGSVGEPGEPGLRGEPGAPGEEGLQGKDGLKGASGGRGLPGEDGEKGDMGLPG 1086
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G G GL GE G +G G+ G G GK G+PG G+PG G + H A G
Sbjct: 1246 GEPGDQGEQGLKGERGCEGHKGKKGAPGPSGKAGIPGLQGLPGPKGIQGYHGADG 1300
>gi|363727386|ref|XP_414992.3| PREDICTED: collagen alpha-1(VII) chain-like [Gallus gallus]
Length = 1794
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 28/47 (59%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G +GL GR G GE G G G G+ G PG+ GL GKDG PG GT
Sbjct: 946 GNVGLSGRPGYKGEIGPKGEKGEPGLPGKPGETGLRGKDGEPGKKGT 992
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 29 GRIGLDGRDGLPGEPGLDG------IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G G+ G G PGEPG G +PGR G GI G G PGKDGI G G K + +
Sbjct: 991 GTSGMKGEAGAPGEPGERGMRGPLGLPGRPGEQGIKGDPGEPGKDGITGEKGDKGESMSS 1050
Query: 83 GADT 86
+T
Sbjct: 1051 LENT 1054
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DR ++G +SGR G G G GE G G+PG+ G G+ GKDG PGK G G G
Sbjct: 944 DRGNVG------LSGRPGYKGEIGPKGEKGEPGLPGKPGETGLRGKDGEPGKKGTSGMKG 997
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTK 76
+ GRIG G G+ GE PG GIPG +G G G+ G PG D GIPG G K
Sbjct: 1486 LPGRIGAPGAKGIKGEIGSPGKPGIPGSDGPYGPKGEQGAPGDDGAFGIPGEKGEK 1541
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G+DG PG+ G G+ G G G PG+ G+ G G+PG G +
Sbjct: 976 GETGLRGKDGEPGKKGTSGMKGEAGAPGEPGERGMRGPLGLPGRPGEQ 1023
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
IG + I G IG G+ G+PG G G PG +G GIPG+ G G G+PG
Sbjct: 1490 IGAPGAKGIKGEIGSPGKPGIPGSDGPYGPKGEQGAPGDDGAFGIPGEKGEKGSKGVPGL 1549
Query: 73 NGTK 76
G K
Sbjct: 1550 GGFK 1553
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I+G IG G GL G PG G P G GI G+ G PGK GIPG++G
Sbjct: 1471 ITGDIGRKGTKGLRGLPGRIGAP---GAKGIKGEIGSPGKPGIPGSDG 1515
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 25/45 (55%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GL G+ G PGE G GI G G G G GLPG+ G PG G K
Sbjct: 1455 GLQGQKGKPGEKGDPGITGDIGRKGTKGLRGLPGRIGAPGAKGIK 1499
>gi|156230677|gb|AAI51847.1| Collagen, type IV, alpha 5 [Homo sapiens]
Length = 1691
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG 59
G +GL G GLPG+PGL GIPG G GIPG
Sbjct: 675 GDVGLPGDPGLPGQPGLPGIPGSKGEPGIPG 705
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 27 ISGRIGLDGRDGLPG---------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G+ GLPG PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1286 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1342
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG G+ G G GLPG G PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKG 1116
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G G+PG+ G +
Sbjct: 1304 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPE 1353
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G PG+PGL G+PG G G PG G PG+ PG NG K D
Sbjct: 1286 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGR---PGLNGMKGD 1328
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 RRDIGRAISTV----ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
+ D G+ I+ + G G DG GLPG+PGL PG+ G+ GIPG G PG GI
Sbjct: 652 KGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGL---PGQPGLPGIPGSKGEPGIPGI 706
>gi|449676568|ref|XP_002164888.2| PREDICTED: collagen alpha-2(I) chain-like [Hydra magnipapillata]
Length = 1475
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGT 75
IG + G +G G G+PG+PG G G G +G PG GLP GKDG PGT+G
Sbjct: 970 IGASGFPGAQGTVGTKGEPGVPGKPGFKGQKGSIGANGSPGPVGLPGKSGKDGAPGTDGK 1029
Query: 76 KTDHYAMGADTKSFSDGVL 94
+ +G S G L
Sbjct: 1030 NGEPGDIGPKGNSGEKGFL 1048
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 28 SGRIGLDGRDG---LPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPG 71
SGR G G+DG PGE G G PG NG G PGKD G PG+DGI G
Sbjct: 901 SGRPGPQGKDGPKGSPGETGHPGKPGENGAPGFPGKDGRNGEPGEDGISG 950
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG------------KDG 62
D+ + GR + G G+ G G G PGL G PG G DGIPG +G
Sbjct: 672 DQGNDGRQGEQGLRGPPGVKGAPGPRGAPGLVGEPGEQGSDGIPGYKGPSGPPGLPGDNG 731
Query: 63 LPGKDGIPGT---NGTKTDHYAMGADTKSFSDG 92
PG G+PG+ G K H A GA ++ +G
Sbjct: 732 QPGSSGLPGSKGPEGEKGQHGARGAKGQTGDEG 764
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 15 DRRDIGRAISTVISGRIG---LDGRDGLP------GEPGLDGIPGRNGMDGIPGKDGLPG 65
DR G A SG+ G + G DG P GE GL GIPG GM G PG G G
Sbjct: 543 DRGSPGPAGKPGTSGKQGARGIPGNDGRPGAMGPMGERGLPGIPGLQGMKGSPGLSGATG 602
Query: 66 KDGIPGTNGTKTDH 79
++G PG GT+ D
Sbjct: 603 ENGRPGDKGTQGDK 616
>gi|440891574|gb|ELR45179.1| Collagen alpha-6(IV) chain, partial [Bos grunniens mutus]
Length = 1656
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ GL G G PG PGL G PG +G G+PG GLPGKDG+PG G+
Sbjct: 653 GQPGLRGNKGDPGSPGLVHLPELSGFPGPHGEKGLPGFPGLPGKDGLPGKVGS 705
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 28/49 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+SGR G G GL G PGL G PG G GIPG+ G G GIPG G
Sbjct: 978 LSGRPGPPGSTGLRGLPGLKGYPGIAGFQGIPGESGSQGLSGIPGLPGA 1026
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 29/52 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G G G PG PGL GIPG +G+ GIPG G G G G+ G K D
Sbjct: 860 LKGEKGSVGLTGFPGIPGLPGIPGASGLKGIPGSTGRVGPSGWAGSPGEKGD 911
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGKDGLPGKDGIPG 71
D+G S + G G+ G GLPG PG G PG G G PG GL G +G+PG
Sbjct: 1087 DVGLPGSLGLPGVAGMRGNPGLPGSPGHPGATGPLGPPGLIGTKGFPGLPGLHGLNGLPG 1146
Query: 72 TNGT 75
T GT
Sbjct: 1147 TKGT 1150
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 28/50 (56%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
+G S + G G DG GLPG PG G PG G+ G PG +G PGK G
Sbjct: 1368 VGLQGSKGLPGIPGKDGASGLPGPPGALGDPGLPGLQGPPGFEGAPGKPG 1417
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 26/49 (53%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G +GL G GLPG PG DG G G G G GLPG G PG G
Sbjct: 1364 VQGPVGLQGSKGLPGIPGKDGASGLPGPPGALGDPGLPGLQGPPGFEGA 1412
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GL G GLPG PGL G G G+ G PG GLP GIPG +G K
Sbjct: 847 GLPGATGLPGLPGLKGEKGSVGLTGFPGIPGLP---GIPGASGLK 888
>gi|4502955|ref|NP_000486.1| collagen alpha-5(IV) chain isoform 1 precursor [Homo sapiens]
gi|461675|sp|P29400.2|CO4A5_HUMAN RecName: Full=Collagen alpha-5(IV) chain; Flags: Precursor
gi|463430|gb|AAC27816.1| type IV collagen alpha 5 chain [Homo sapiens]
gi|119623088|gb|EAX02683.1| collagen, type IV, alpha 5 (Alport syndrome), isoform CRA_a [Homo
sapiens]
gi|168277662|dbj|BAG10809.1| collagen alpha-5(IV) chain precursor [synthetic construct]
Length = 1685
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 27 ISGRIGLDGRDGLPG---------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G+ GLPG PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1280 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1336
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG G+ G G GLPG G PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKG 1116
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G G+PG+ G +
Sbjct: 1298 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPE 1347
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G PG+PGL G+PG G G PG G PG+ PG NG K D
Sbjct: 1280 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGR---PGLNGMKGD 1322
>gi|340378956|ref|XP_003387993.1| PREDICTED: collagen alpha-1(I) chain-like [Amphimedon
queenslandica]
Length = 1573
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 30/54 (55%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G G PGE G +G G+ G G PG G+PG+DG PG +G DH G D
Sbjct: 735 GTQGPPGSPGEQGFEGEAGQRGPAGQPGDAGVPGRDGEPGHSGPSGDHGVAGKD 788
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 16 RRDIGRAISTVISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
R + G +T G GLDG G G+ G G G G G PG DG PGK+G
Sbjct: 938 RGETGPPGATGPQGPPGLDGASGDRGDTGSAGDKGSKGSKGNRGATGAPGNDGTPGKEGG 997
Query: 70 PGTNGTKTDHYAMG 83
PG G K D +G
Sbjct: 998 PGVRGEKGDPGPIG 1011
>gi|308478828|ref|XP_003101624.1| CRE-COL-156 protein [Caenorhabditis remanei]
gi|308262835|gb|EFP06788.1| CRE-COL-156 protein [Caenorhabditis remanei]
Length = 313
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 25/40 (62%)
Query: 37 DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
DG PG+PG G G G G PG +G PG+DG PG NG +
Sbjct: 179 DGFPGQPGAPGPAGPQGDAGAPGNNGQPGQDGRPGQNGQR 218
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 37 DGLPGEPGLDGIPGRNGMDGIPGKD 61
DG PG+ G DG PG NG+DG+PG D
Sbjct: 259 DGQPGQKGGDGTPGENGLDGVPGTD 283
>gi|15890086|ref|NP_203699.1| collagen alpha-5(IV) chain isoform 2 precursor [Homo sapiens]
gi|7676171|gb|AAF66217.2| type IV collagen alpha 5 chain [Homo sapiens]
Length = 1691
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 27 ISGRIGLDGRDGLPG---------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G+ GLPG PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1286 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1342
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG G+ G G GLPG G PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKG 1116
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G G+PG+ G +
Sbjct: 1304 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPE 1353
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G PG+PGL G+PG G G PG G PG+ PG NG K D
Sbjct: 1286 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGR---PGLNGMKGD 1328
>gi|397497898|ref|XP_003819740.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-5(IV) chain [Pan
paniscus]
Length = 1691
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 27 ISGRIGLDGRDGLPG---------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G+ GLPG PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1286 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1342
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG G+ G G GLPG G PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKG 1116
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G G+PG+ G +
Sbjct: 1304 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPE 1353
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G PG+PGL G+PG G G PG G PG+ PG NG K D
Sbjct: 1286 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGR---PGLNGMKGD 1328
>gi|332029959|gb|EGI69784.1| Collagen alpha-1(IV) chain [Acromyrmex echinatior]
Length = 1705
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGKDGIPGTNGTK 76
+SG G G G+ GEPG DG+PGR G M GIPG G GKDG PG G++
Sbjct: 1321 VSGLPGFPGLQGMIGEPGKDGLPGRQGETGMIGIPGLQGPDGKDGPPGYQGSR 1373
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G DGR GLPGEPGL +G +G+ G+ G PG DG G G K + MG D
Sbjct: 943 GLAGFDGRPGLPGEPGLA----TDGFNGLQGQKGEPGFDGYNGREGPKGEIGDMGPD 995
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGM---DGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G G G PGEPG G+PGR G G PG DG G G PG G + H A G
Sbjct: 1080 GHDGFSGVKGQPGEPGYIGVPGRKGQIGDRGYPGPDGFLGLPGFPGLPGDQGPHGAPG 1137
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I D G PGEPG G+ GR G+ G+ G GL G DG+PG G + +
Sbjct: 1233 ISADSAKGQPGEPGWRGLDGRTGLKGMRGDSGLSGIDGLPGQKGERGE 1280
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP 64
GR+ + ISGR G G GL G PG DG+ G++G+DG PG G P
Sbjct: 1008 GRSGAHGISGRHGAKGERGLIGPPGFDGLKGKSGLDGDPGIMGRP 1052
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGTKTDH 79
GL G G GE GLDG PG G G+PG GL GK G+PG G + D+
Sbjct: 436 GLPGEKGQRGESGLDGYPGTTGFSGLPGPRGLKGVLGKRGVPGPAGLEGDN 486
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G G DG PG G G+PG G+ G+ GK G+PG G+ G NG
Sbjct: 442 GQRGESGLDGYPGTTGFSGLPGPRGLKGVLGKRGVPGPAGLEGDNG 487
>gi|119629743|gb|EAX09338.1| collagen, type XVIII, alpha 1, isoform CRA_a [Homo sapiens]
Length = 1472
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G PG PGL G G G DG+PG GLPG++GI G G K D + G
Sbjct: 778 GDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRG 823
>gi|119629745|gb|EAX09340.1| collagen, type XVIII, alpha 1, isoform CRA_c [Homo sapiens]
Length = 1475
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G PG PGL G G G DG+PG GLPG++GI G G K D + G
Sbjct: 781 GDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRG 826
>gi|426397050|ref|XP_004064741.1| PREDICTED: collagen alpha-5(IV) chain [Gorilla gorilla gorilla]
Length = 1685
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 27 ISGRIGLDGRDGLPG---------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G+ GLPG PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1280 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1336
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG G+ G G GLPG G PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKG 1116
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G G+PG+ G +
Sbjct: 1298 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPE 1347
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G PG+PGL G+PG G G PG G PG+ PG NG K D
Sbjct: 1280 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGR---PGLNGMKGD 1322
>gi|410056839|ref|XP_003317667.2| PREDICTED: collagen alpha-5(IV) chain isoform 1 [Pan troglodytes]
gi|410210410|gb|JAA02424.1| collagen, type IV, alpha 5 [Pan troglodytes]
gi|410265584|gb|JAA20758.1| collagen, type IV, alpha 5 [Pan troglodytes]
gi|410294768|gb|JAA25984.1| collagen, type IV, alpha 5 [Pan troglodytes]
Length = 1685
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 27 ISGRIGLDGRDGLPG---------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G+ GLPG PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1280 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1336
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG G+ G G GLPG G PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKG 1116
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G G+PG+ G +
Sbjct: 1298 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPE 1347
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G PG+PGL G+PG G G PG G PG+ PG NG K D
Sbjct: 1280 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGR---PGLNGMKGD 1322
>gi|313226172|emb|CBY21315.1| unnamed protein product [Oikopleura dioica]
Length = 1198
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI------PGKDGLPGKDGIPGTNGTK 76
ST I G G G DGLPG PG+ G PG G +G+ G GLPGKDG PG G +
Sbjct: 523 STGIPGLPGQPGVDGLPGHPGVVGKPGNKGPNGVKGFHGEKGPPGLPGKDGNPGHPGVR 581
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G GR G+ G G+ G+PG+ G+DG+PG G+ GK G G NG K H
Sbjct: 513 GPHGRPGVMGSTGIPGLPGQPGVDGLPGHPGVVGKPGNKGPNGVKGFH 560
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 29/51 (56%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G G+ G GLPG+ GLDG G G+DG G GLPG G G G K D
Sbjct: 817 AGPTGVQGTQGLPGKNGLDGARGDAGIDGANGISGLPGPAGQKGEPGPKGD 867
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 25/48 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G GR+G GE G G G G GIPGK G PG G G GT+
Sbjct: 779 GEPGAQGREGKEGEKGSKGDSGPEGQPGIPGKTGRPGDAGPTGVQGTQ 826
>gi|410056841|ref|XP_003339411.2| PREDICTED: collagen alpha-5(IV) chain [Pan troglodytes]
gi|410210412|gb|JAA02425.1| collagen, type IV, alpha 5 [Pan troglodytes]
gi|410294770|gb|JAA25985.1| collagen, type IV, alpha 5 [Pan troglodytes]
gi|410337611|gb|JAA37752.1| collagen, type IV, alpha 5 [Pan troglodytes]
Length = 1691
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE 700
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 27 ISGRIGLDGRDGLPG---------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G+ GLPG PGL G PGR G++G+ G GLPG G PG G
Sbjct: 1286 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1342
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 25/44 (56%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGL G G GEPGL G PG G+ G G GLPG G PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKG 1116
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G G+PG+ G +
Sbjct: 1304 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPE 1353
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G PG+PGL G+PG G G PG G PG+ PG NG K D
Sbjct: 1286 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGR---PGLNGMKGD 1328
>gi|402594864|gb|EJW88790.1| nematode cuticle collagen domain-containing protein [Wuchereria
bancrofti]
Length = 308
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 22 AISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
A+ G G G G PG PG G+PG+NG +G PG PG DG+PG G
Sbjct: 230 AVPNGPQGHPGRRGEQGAPGSPGKSGLPGKNGAEGPPGD---PGSDGVPGLVGA 280
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT--KTDHYAM 82
G G G+ GLPG+ G +G PG G DG+PG G G+ GI G G+ + DH +
Sbjct: 245 QGAPGSPGKSGLPGKNGAEGPPGDPGSDGVPGLVGATGEPGIRGPQGSIGQCDHCPL 301
>gi|345490482|ref|XP_001603734.2| PREDICTED: collagen alpha-2(I) chain-like [Nasonia vitripennis]
Length = 1107
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPGTNGTKTDHYAMGAD 85
G G G GLPG PG DG PG +G G PG GLPG G+PG GTK GAD
Sbjct: 331 GTQGSPGPRGLPGLPGNDGEPGEDGELGAPGPHGLPGPRGAPGLPGLPGTKGHKGTAGAD 390
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
D+GR G +G G G PG PG G PG NG G G DG PG+ GI G G+
Sbjct: 641 DVGRV------GPVGPQGLRGQPGRPGNPGKPGNNGDRGAAGADGKPGEQGIQGPPGS 692
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G G GLPG PGL G+PG G G G DGL G+ G PG G
Sbjct: 355 GELGAPGPHGLPGPRGAPGLPGLPGTKGHKGTAGADGLRGQPGSPGEKG 403
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+ GL G +G G+ GL+G+PG G G G G+PG+ G PG G +
Sbjct: 730 GKPGLPGPEGSKGDRGLEGLPGPKGHRGFNGLQGVPGQPGAPGDKGAQ 777
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 29/59 (49%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
R D GR +T G G G++G GE G G G G G PG GLPG G PG G
Sbjct: 486 RGDAGRTGATGEPGPPGATGKEGPRGEKGTPGTNGLVGQPGFPGVRGLPGTPGTPGQPG 544
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD------GLPGKDGIPGTNG 74
G G +G G+PG+PG G G G G PGKD G PG+DG PG G
Sbjct: 754 GHRGFNGLQGVPGQPGAPGDKGAQGPVGPPGKDGDTGLRGPPGRDGNPGPQG 805
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G +GL G+PG G+ G G G PG+ G+ G G+PG G + D
Sbjct: 511 GEKGTPGTNGLVGQPGFPGVRGLPGTPGTPGQPGIEGLPGVPGEKGGRGD 560
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPGTNGTK 76
+G+ G G G PG GL G PG G+ G+PG G PG+ +G+PG G K
Sbjct: 504 TGKEGPRGEKGTPGTNGLVGQPGFPGVRGLPGTPGTPGQPGIEGLPGVPGEK 555
>gi|281604200|ref|NP_001094312.1| collagen alpha-1(IX) chain [Rattus norvegicus]
Length = 934
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 32/60 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G+DGRDG+PG PG G G+ G G G GLPG GIPG G + G K
Sbjct: 550 TGLPGVDGRDGIPGMPGTKGEAGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGNTGPPGK 609
>gi|168278128|dbj|BAG11042.1| collagen alpha-2(IV) chain precursor [synthetic construct]
Length = 1712
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 31/60 (51%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DR D G G G G DG+PG PGL G G GMDG G GL G+ G PG+ G
Sbjct: 888 DRGDAGFTGEQGHPGSPGFKGIDGMPGTPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKG 947
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDG------LPG 65
DR G S + G GL G+ GLPG +PGL G PG +G G PG++G +PG
Sbjct: 801 DRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGPPGLHGFPGAPGQEGPLGLPGIPG 860
Query: 66 KDGIPGTNGTKTDHYAMG 83
++G+PG G D A G
Sbjct: 861 REGLPGDRGDPGDTGAPG 878
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 29/47 (61%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GRIGL G G G PG G+PG G+ GI G GLPG G PG+ G+
Sbjct: 1167 GRIGLPGGKGDDGWPGAPGLPGFPGLRGIRGLHGLPGTKGFPGSPGS 1213
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G G +G PG G G PG++G+ G PG G+PG G PG G K D
Sbjct: 498 LPGPKGFAGINGEPGRKGDKGDPGQHGLPGFPGLKGVPGNIGAPGPKGAKGD 549
>gi|49117309|gb|AAH72650.1| Col4a1 protein [Mus musculus]
Length = 1562
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 37/76 (48%), Gaps = 15/76 (19%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G IG G GLPGE PGLDG+PG G G+PG + G PG DGIPG+
Sbjct: 1103 GNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 1162
Query: 74 GTKTDHYAMGADTKSF 89
G K + G F
Sbjct: 1163 GEKGEQGVPGRGFPGF 1178
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 33/65 (50%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ G T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G
Sbjct: 844 DKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGTPGLPG 903
Query: 75 TKTDH 79
K DH
Sbjct: 904 EKGDH 908
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++ + G A + + G G G G G PG G+PG G G+PG DG+PG G G G
Sbjct: 1080 EKGEKGSAGTPGMPGSPGPRGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPG 1139
Query: 75 TKTDHYAMGADTKSFSDGV 93
T G + SDG+
Sbjct: 1140 TPGPTGPAGQKGEPGSDGI 1158
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMD--------GIPGKDGLPGKDGIPGTNGTK 76
+ G G GR G PG PG +G+PG G G+PG G PG GIPGT G K
Sbjct: 700 VDGLPGEIGRPGSPGRPGFNGLPGNPGPQGQKGEPGIGLPGLKGQPGLPGIPGTPGEK 757
>gi|432869178|ref|XP_004071661.1| PREDICTED: collagen alpha-1(V) chain-like [Oryzias latipes]
Length = 1863
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 31/53 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
I G G GR+G PGE GL G+PG G G PG G+ G DG+ G G+K +
Sbjct: 771 IDGPPGHPGREGPPGEKGLQGLPGSQGPIGYPGTRGVKGADGVRGMKGSKGEK 823
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G GL GRDG EPG G+PG G G PG+DG G+ G PG G+K D G
Sbjct: 1139 GTTGLAGRDG---EPGPAGLPGIAGPQGPPGEDGDKGETGGPGQKGSKGDKGEAG 1190
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G +GL G DG PG PG +G PG G+ G+PG G G PGT G K
Sbjct: 764 GILGLPGIDGPPGHPGREGPPGEKGLQGLPGSQ---GPIGYPGTRGVK 808
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G IGL G G G+PG+ G+PG +G G PG++G PG+ G+ G G++
Sbjct: 748 QGPIGLPGEKGPQGKPGILGLPGIDGPPGHPGREGPPGEKGLQGLPGSQ 796
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 29/53 (54%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
S + G G G GLPGE G G PG G+ GI G G PG++G PG G +
Sbjct: 738 SPGVQGFPGAQGPIGLPGEKGPQGKPGILGLPGIDGPPGHPGREGPPGEKGLQ 790
>gi|355745425|gb|EHH50050.1| hypothetical protein EGM_00812 [Macaca fascicularis]
Length = 1714
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
SG+ G+ G GLPG G+ G G +G+ G PGK G PGK G+PG G+
Sbjct: 1275 SGKAGIPGLQGLPGPKGIQGYHGADGILGNPGKVGPPGKQGLPGIRGS 1322
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTKTD 78
G +G G G PGEPGL G PG G +G+ GKDGL G G+PG +G K D
Sbjct: 1028 KGDVGPAGSVGEPGEPGLRGEPGAPGEEGLQGKDGLKGASGGRGLPGEDGEKGD 1081
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GR GL G G PG G G+PG G+ G G+ GLPG+ GI GT G +
Sbjct: 1324 GRTGLAGAPGPPGVKGSSGLPGSPGIQGPKGEQGLPGQPGIQGTRGHR 1371
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G++G G+ GLPG + G PGR G+ G PG G+ G G+PG+ G +
Sbjct: 1306 GKVGPPGKQGLPG---IRGSPGRTGLAGAPGPPGVKGSSGLPGSPGIQ 1350
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPG 71
D+G A S G GL G G PGE GL DG+ G +G G+PG+DG G G+PG
Sbjct: 1030 DVGPAGSVGEPGEPGLRGEPGAPGEEGLQGKDGLKGASGGRGLPGEDGEKGDMGLPG 1086
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G G GL GE G +G G+ G G GK G+PG G+PG G + H A G
Sbjct: 1246 GEPGDQGEQGLKGERGCEGHKGKKGAPGPSGKAGIPGLQGLPGPKGIQGYHGADG 1300
>gi|281342749|gb|EFB18333.1| hypothetical protein PANDA_015151 [Ailuropoda melanoleuca]
Length = 1633
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 27 ISGRIGLDGRDGLPGEPG------LDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G+ GL G G PG PG L G PG G G+PG GLPGKDG+PG G+
Sbjct: 634 TPGQPGLRGNKGEPGSPGSVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGKLGSPGLPG 693
Query: 81 AMGADTKSF 89
+ GA F
Sbjct: 694 SKGAPGDIF 702
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 33/56 (58%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
IGRA +G+ GL G G PG G GIPG +G G+ G GLPG G+PG+ G
Sbjct: 962 IGRAGLPGSTGQRGLPGLKGSPGITGFPGIPGESGSQGLNGAPGLPGTSGLPGSKG 1017
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 18/75 (24%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKD------------ 61
G A + +G+ GL G GLPG PGL G+PG G+ G+PG
Sbjct: 797 GEAGAPSSAGKRGLPGLKGLPGSPGLVGFLGSSGLPGNTGLPGLPGPKGEKGSFGLAGFP 856
Query: 62 GLPGKDGIPGTNGTK 76
G+PG GIPG +G K
Sbjct: 857 GMPGLPGIPGASGLK 871
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GLPG PG G PG G++G+PG+ GLPG GI
Sbjct: 570 GLPGSPGPRGFPGDQGINGLPGQQGLPGLPGI 601
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
+G S + G G DG +GLPG PG G PG G+ G PG +G PGK G
Sbjct: 1351 VGFQGSKGLPGIPGKDGLNGLPGPPGALGDPGLPGLQGPPGFEGAPGKKG 1400
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 30/57 (52%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+G S G +G+ G G PG PGL GI G G G PG G PG G G++G
Sbjct: 1052 DVGFPGSKGEDGNVGISGDVGFPGSPGLPGIAGMRGNPGFPGSPGHPGATGPLGSSG 1108
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
++G +G+ G G G GL GIPG++G++G+PG G G G+PG G A G
Sbjct: 1341 LTGDLGVQGPVGFQGSKGLPGIPGKDGLNGLPGPPGALGDPGLPGLQGPPGFEGAPG 1397
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 27/48 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GR GL G G G PGL G PG G GIPG+ G G +G PG GT
Sbjct: 963 GRAGLPGSTGQRGLPGLKGSPGITGFPGIPGESGSQGLNGAPGLPGTS 1010
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 27/53 (50%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
G G G G PG PG DG+ G G G+PG G PG G PG G + + A
Sbjct: 749 GSPGTPGHMGQPGSPGPDGLFGVKGKPGLPGAPGFPGPSGHPGKKGVRGEAGA 801
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 29 GRIGLDGRDGLP------GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G+ G+ G G P G PGL G+PG G+ G G GLPG G+PG G K + +
Sbjct: 791 GKKGVRGEAGAPSSAGKRGLPGLKGLPGSPGLVGFLGSSGLPGNTGLPGLPGPKGEKGSF 850
Query: 83 G 83
G
Sbjct: 851 G 851
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 17/62 (27%)
Query: 27 ISGRIGLDGRDGLPGE---PGL--------------DGIPGRNGMDGIPGKDGLPGKDGI 69
+ G GL G+DGLPG+ PGL +G PG G+ G+PG G+PG G+
Sbjct: 670 LPGFPGLPGKDGLPGKLGSPGLPGSKGAPGDIFGAENGAPGEQGLQGLPGDRGVPGDSGL 729
Query: 70 PG 71
PG
Sbjct: 730 PG 731
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G +G G GLPG PG DG+ PG G G+PG G PG +G PG G
Sbjct: 1347 VQGPVGFQGSKGLPGIPGKDGLNGLPGPPGALGDPGLPGLQGPPGFEGAPGKKG 1400
>gi|170037658|ref|XP_001846673.1| collagen alpha-2(IV) chain [Culex quinquefasciatus]
gi|167880957|gb|EDS44340.1| collagen alpha-2(IV) chain [Culex quinquefasciatus]
Length = 1785
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNG------MDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G GL GRDG PG PG DG+ GRN M G+ G G PG DG PG G + D
Sbjct: 644 GSPGLRGRDGDPGLPGRDGVHGRNAVYNAYNMWGLKGSQGPPGDDGTPGERGDQGDRGER 703
Query: 83 GADTK 87
GA +
Sbjct: 704 GATAE 708
>gi|426236903|ref|XP_004012404.1| PREDICTED: collagen alpha-1(IV) chain [Ovis aries]
Length = 1793
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G +G G GLPGE G G+PG +G+ GI G+ GLPGK G G G K +
Sbjct: 1228 GSVGYPGSPGLPGEKGDKGLPGLDGIPGIKGEAGLPGKPGPTGPAGQKGE---------P 1278
Query: 89 FSDGVLPSVQRAIAAGLVIYRF 110
SDG+ SV AGL F
Sbjct: 1279 GSDGIPGSVGEKGEAGLPGRGF 1300
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 31/64 (48%), Gaps = 14/64 (21%)
Query: 31 IGLDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G+ G G PG PGLD G+PG G G+PG LPG+ G PG G D
Sbjct: 955 TGVKGEKGFPGFPGLDMPGPKGDKGSQGLPGLTGQSGLPG---LPGQQGSPGQPGIPGDS 1011
Query: 80 YAMG 83
AMG
Sbjct: 1012 PAMG 1015
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ G T SG GL G+ G PG+PG+ G G+ G PG+ G PG G+PG G
Sbjct: 977 DKGSQGLPGLTGQSGLPGLPGQQGSPGQPGIPGDSPAMGVMGTPGQPGSPGPAGVPGLPG 1036
Query: 75 TK 76
K
Sbjct: 1037 AK 1038
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E D+ + G+ T G G G G+PG+ G G PG+ G G PG G+PG G+PG
Sbjct: 1074 EKGDQGEKGQTGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGVSGIPGAPGLPG 1133
Query: 72 TNGT 75
G+
Sbjct: 1134 PKGS 1137
>gi|410969573|ref|XP_003991269.1| PREDICTED: collagen alpha-3(IV) chain [Felis catus]
Length = 1669
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTKTDH 79
DG+ G PG+PGL G PGR G+DGIPG G+ PG G P G K D
Sbjct: 546 DGQVGAPGDPGLRGHPGRRGLDGIPGTPGVKGSPGPKGEPALTGEKGDQ 594
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 18 DIGRAISTVISGRIGLDGRDGL--PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
++G+ S G G G GL PGEPG G PG G G G+ GLPG G+PG GT
Sbjct: 723 EMGKPGSPGEPGLPGAKGEPGLALPGEPGTPGFPGERGNSGKNGEIGLPGHPGLPGIPGT 782
Query: 76 K 76
+
Sbjct: 783 R 783
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 28/54 (51%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G+ G DGR G PG G G G G G PG DGLPG G PG G T AM
Sbjct: 1389 GKPGKDGRPGTPGPVGEKGNKGCKGEQGPPGLDGLPGLKGKPGDIGPPTTATAM 1442
>gi|395519917|ref|XP_003764087.1| PREDICTED: collagen alpha-1(III) chain [Sarcophilus harrisii]
Length = 1464
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 27/43 (62%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIP 70
SG+ G G G G PGL G+PG G DG PG DG PG+DG P
Sbjct: 988 SGQNGERGPQGPQGLPGLSGMPGEPGRDGNPGSDGQPGRDGAP 1030
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 31/60 (51%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A G G DG++G PGEPG +GIPG G G PG G G G PG
Sbjct: 444 EPGPRGERGEAGIPGTPGAKGEDGKNGNPGEPGANGIPGAPGERGAPGFRGSAGSPGTPG 503
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ G G++G G G G+PG +GM G PG+DG PG DG PG +G
Sbjct: 983 GKPGPSGQNGERGPQGPQGLPGLSGMPGEPGRDGNPGSDGQPGRDGA 1029
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G+ G GR G PGE GL G PG G G+PG GL G G G NG K + A G
Sbjct: 229 AGKDGESGRPGRPGERGLPGAPGVKGPSGMPGFPGLKGHRGFDGRNGEKGETGAPG 284
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLD---GIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR + G G+ G G+PG PGL G GRNG G G GL G++G+PG NG+
Sbjct: 239 GRPGERGLPGAPGVKGPSGMPGFPGLKGHRGFDGRNGEKGETGAPGLKGENGLPGENGS 297
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 27/49 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR G G G PG G +G+PG NG G G GLPG+ G PG GT
Sbjct: 270 FDGRNGEKGETGAPGLKGENGLPGENGSPGPMGPRGLPGERGRPGLPGT 318
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G G G PG+ G G PG+NG G PG G G+ GIPGT G K + G +
Sbjct: 416 GPPGTAGTPGTPGQRGPAGEPGKNGGKGEPGPRGERGEAGIPGTPGAKGEDGKNGNPGEP 475
Query: 89 FSDGV 93
++G+
Sbjct: 476 GANGI 480
>gi|390475145|ref|XP_003734907.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(VII) chain-like
[Callithrix jacchus]
Length = 2993
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GLDGR GL G+PG G PG NG GK G PG+DG+PG G +
Sbjct: 1771 GPPGLDGRSGLDGKPGAPGSPGLNGAT---GKAGDPGRDGLPGLRGEQ 1815
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G G G G PGL G+PG G G IPG G PGK G+PG G K D MG
Sbjct: 2561 GSKGEPGDKGFSGSPGLRGLPGPQGQPGAAGIPGDPGSPGKAGVPGIRGEKGDIGFMG 2618
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGKDGL------------PGKDG 68
+ GR GLDG+ G PG PGL+G PGR+G+ G+ G+ G PG+DG
Sbjct: 1775 LDGRSGLDGKPGAPGSPGLNGATGKAGDPGRDGLPGLRGEQGPPGPSGPPGLLGKPGEDG 1834
Query: 69 IPGTNGTKTDHYAMGADTKSFSDG 92
PG NG + G D + G
Sbjct: 1835 KPGLNGKNGEPGDPGEDGRKGEKG 1858
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 24/45 (53%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
ST+ G G G DG PG PG G PG G G+ G GLPG G
Sbjct: 1289 STIAKGERGFPGADGRPGSPGQPGTPGNPGAPGLKGSPGLPGPRG 1333
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GLDG G PG PGL G G G G+PG+ G PGK+G+ G G +
Sbjct: 2628 VKGACGLDGEKGDKGEVGPPGRPGLAGHKGEMGEPGVPGQSGSPGKEGLIGPKGDR 2683
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPG 71
G+ GL+G++G PG+PG DG G G G PG+ DG G+ G PG
Sbjct: 1834 GKPGLNGKNGEPGDPGEDGRKGEKGESGAPGREGHDGPKGERGPPG 1879
>gi|110611235|ref|NP_085059.2| collagen alpha-1(XVIII) chain isoform 1 precursor [Homo sapiens]
gi|119629744|gb|EAX09339.1| collagen, type XVIII, alpha 1, isoform CRA_b [Homo sapiens]
gi|119629749|gb|EAX09344.1| collagen, type XVIII, alpha 1, isoform CRA_b [Homo sapiens]
Length = 1516
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G PG PGL G G G DG+PG GLPG++GI G G K D + G
Sbjct: 822 GDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRG 867
>gi|7717447|emb|CAB90482.1| human type XVIII collagen [Homo sapiens]
Length = 1519
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G PG PGL G G G DG+PG GLPG++GI G G K D + G
Sbjct: 822 GDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRG 867
>gi|47086873|ref|NP_997744.1| collagen alpha-2(IX) chain precursor [Danio rerio]
gi|22074808|gb|AAM52986.1| type IX collagen alpha 2 precursor [Danio rerio]
Length = 690
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G+DG+DG PG PG+ G G+NG G PG G PG G+PG G
Sbjct: 299 NGLPGIDGKDGTPGIPGIKGAAGQNGRPGAPGNQGDPGLPGMPGAKG 345
>gi|116256354|ref|NP_001837.2| collagen alpha-2(IV) chain preproprotein [Homo sapiens]
gi|143811377|sp|P08572.4|CO4A2_HUMAN RecName: Full=Collagen alpha-2(IV) chain; Contains: RecName:
Full=Canstatin; Flags: Precursor
gi|119629516|gb|EAX09111.1| collagen, type IV, alpha 2, isoform CRA_a [Homo sapiens]
gi|119629517|gb|EAX09112.1| collagen, type IV, alpha 2, isoform CRA_a [Homo sapiens]
Length = 1712
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 31/60 (51%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DR D G G G G DG+PG PGL G G GMDG G GL G+ G PG+ G
Sbjct: 888 DRGDAGFTGEQGHPGSPGFKGIDGMPGTPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKG 947
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDG------LPG 65
DR G S + G GL G+ GLPG +PGL G PG +G G PG++G +PG
Sbjct: 801 DRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGPPGLHGFPGAPGQEGPLGLPGIPG 860
Query: 66 KDGIPGTNGTKTDHYAMG 83
++G+PG G D A G
Sbjct: 861 REGLPGDRGDPGDTGAPG 878
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 29/47 (61%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GRIGL G G G PG G+PG G+ GI G GLPG G PG+ G+
Sbjct: 1167 GRIGLPGGKGDDGWPGAPGLPGFPGLRGIRGLHGLPGTKGFPGSPGS 1213
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G G +G PG G G PG++G+ G PG G+PG G PG G K D
Sbjct: 498 LPGPKGFAGINGEPGRKGDRGDPGQHGLPGFPGLKGVPGNIGAPGPKGAKGD 549
>gi|395745551|ref|XP_002824474.2| PREDICTED: collagen alpha-2(IV) chain [Pongo abelii]
Length = 1862
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDG------LPG 65
DR G S + G GL G+ GLPG +PGL G PG +G G PG++G +PG
Sbjct: 829 DRGSPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGPPGLHGFPGAPGQEGPLGLPGIPG 888
Query: 66 KDGIPGTNGTKTDHYAMG 83
++G+PG G D A G
Sbjct: 889 REGLPGDRGDPGDTGAPG 906
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 31/60 (51%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DR D G G G G DG+PG PGL G G GMDG G GL G+ G PG+ G
Sbjct: 916 DRGDAGFTGERGHPGSPGFKGIDGMPGTPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKG 975
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 29/48 (60%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
SGRIGL G G G PG G+PG G+ GI G GLPG G PG+ G
Sbjct: 1316 SGRIGLPGGKGDDGWPGAPGLPGFPGLRGIRGLHGLPGTKGFPGSPGA 1363
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G G G +G PG G G PG++G+ G PG G+PG G PG G K D
Sbjct: 526 LPGPKGFAGINGEPGTKGDKGDPGQHGLPGFPGLKGVPGNVGAPGPKGAKGDS 578
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 28/50 (56%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
T G G GR GLPG G DG PG G+ G PG G+ G G+PGT G
Sbjct: 1307 TGPPGSQGESGRIGLPGGKGDDGWPGAPGLPGFPGLRGIRGLHGLPGTKG 1356
>gi|307200816|gb|EFN80869.1| Collagen alpha-1(IV) chain [Harpegnathos saltator]
Length = 1808
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G DGR GLPGEPGL +G +G+ G+ G PG DG G G+K + MG D
Sbjct: 995 GLTGFDGRPGLPGEPGLS----TDGFNGLQGQKGEPGFDGFDGVEGSKGEIGDMGPD 1047
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
G PGL G PG+ GM G PGKDGLPG++G
Sbjct: 1388 GAPGLPGFPGQQGMMGEPGKDGLPGREG 1415
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G PGEPG G+ GR G G+ G GLPG +G+PG G + +
Sbjct: 1308 GQPGEPGFIGLDGRTGPKGMKGDSGLPGFNGLPGPKGERGN 1348
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 27/57 (47%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+IG G IG G GLPG PG D G G G PG +GLPG G G G
Sbjct: 772 EIGERGWYGPKGDIGFAGPQGLPGRPGEDAAKGVKGAKGAPGYEGLPGLQGTKGQRG 828
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
SG IG+ GR G G+ G PG G G+PG GLPG G PGT G ++ G +
Sbjct: 1162 SGYIGVLGRKGQTGD---RGYPGPTGFPGLPGFPGLPGDQGPPGTPGLVVEYAEPGEIGR 1218
Query: 88 SFSDGVLPSV 97
+ DG LP V
Sbjct: 1219 AGLDG-LPGV 1227
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 32 GLDGRDGLPGEPGLDGIPGRN------GMDGIPGKDGLPGKDGIPGTNG 74
G G+ G+ GEPG DG+PGR G+ G+ G+DG G +G PG+ G
Sbjct: 1394 GFPGQQGMMGEPGKDGLPGREGERGMIGLPGLQGRDGEDGPEGYPGSRG 1442
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GR + + GRIG G DGL G+ G DG PG G G+PG G G GI G G K
Sbjct: 1069 GRHGAKGLRGRIGPAGFDGLEGKRGPDGDPGLMGRPGMPGDVGFRGAPGIMGAPGLKGYI 1128
Query: 80 YAMGADTKSFSD 91
G+ + +F++
Sbjct: 1129 GEPGSPSYAFAE 1140
>gi|348534775|ref|XP_003454877.1| PREDICTED: otolin-1-like [Oreochromis niloticus]
Length = 489
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 31/60 (51%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ D G S G+ G G G PG PG GIPG+NG G PG G+ G G PG G
Sbjct: 247 DKGDRGECASYGEKGQKGEPGEPGAPGIPGAMGIPGQNGKHGSPGPIGVRGDPGAPGPQG 306
>gi|335283079|ref|XP_003123701.2| PREDICTED: collagen alpha-1(XXIII) chain-like [Sus scrofa]
Length = 641
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 28/50 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+ GL G G GEPG G PG NG+DG PG G PG+ G G G +
Sbjct: 245 TPGQPGLSGPAGPKGEPGSSGPPGENGVDGAPGPKGEPGQPGADGATGPR 294
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 27/51 (52%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G G G G PGE G+DG PG G G PG DG G G PG G + D
Sbjct: 255 AGPKGEPGSSGPPGENGVDGAPGPKGEPGQPGADGATGPRGPPGLKGEQGD 305
Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Query: 29 GRIGLDGRDGLPGEPGLDGIP------------GRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G G PGEPGLDG P G G G+PG+ G+ G+ G PG G
Sbjct: 463 GLPGTKGEKGRPGEPGLDGFPGPRGEKGDRSERGEKGERGVPGRKGMKGQKGEPGPPG 520
>gi|456753404|gb|JAA74162.1| collagen, type IV, alpha 1 [Sus scrofa]
Length = 1669
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G K DH
Sbjct: 854 TGQSGLPGLPGQQGTPGLPGFPGPKGEMGVMGTPGQPGSPGPAGAPGLPGEKGDH 908
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 33/65 (50%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKDGL---------PGKDGIPGTN 73
G +G G G PGE PGLDG PG G G+PGK G PG DGIPG+
Sbjct: 1103 GSVGYPGSPGSPGEKGDKGLPGLDGAPGSKGEAGLPGKPGPTGPAGQKGEPGSDGIPGSA 1162
Query: 74 GTKTD 78
G K +
Sbjct: 1163 GEKGE 1167
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G++G+PG G PG G PG G + Y
Sbjct: 489 GFPGQPGAKGDRGLPGRDGLEGLPGPQGAPGLMGQPGAKGEPGEIY 534
>gi|449483549|ref|XP_004174788.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-2(IV) chain
[Taeniopygia guttata]
Length = 1726
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG 65
+ + G ++ G G+ G GLPG G DG PGR+G+DG+PG+ GLPG
Sbjct: 555 QKGEKGDSLHITTKGTKGIRGDPGLPGIRGEDGFPGRDGLDGLPGQPGLPG 605
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 29 GRIGLDGRDGLPGEPGLDG-----------IPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
G G DG DGLPG+PGL G PG G G PG+ GLPG +G PG G +
Sbjct: 587 GFPGRDGLDGLPGQPGLPGDVIRGFPGDPGYPGELGPKGFPGEAGLPG-EGFPGPKGFRG 645
Query: 78 DHYAMGADTKSFSDGV--LPSVQRAIAAGLVIYRF 110
G S G+ LP + G VI F
Sbjct: 646 PPGDQGQAGNPGSPGLPGLPGEPGQLDCGQVIEDF 680
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG+PG G PG NG G PG++G PG G G G +
Sbjct: 708 VPGATGAKGARGFPGDPGPMGFPGLNGTRGDPGREGFPGPPGFTGPRGDR 757
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTNGT 75
G +GL G GL G PG G+PG G DG PG GLPG G+PGT GT
Sbjct: 799 GDVGLPGFPGLKGAPGDQGVPGTRGADGSPGLPGPKGDPGPQGLPGLTGLPGTPGT 854
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G GL G+ G PG PGL G G+ G GI G GLPG G+PG+ G
Sbjct: 1182 GTPGLRGQKGAPGWPGLPGQAGQPGFRGISGLHGLPGTKGLPGSPG 1227
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP------GKDGIPGTNGTKTDHY 80
+ G G+ G++G PG PG+ I G G G PG DG+P G+ GIP G+K +
Sbjct: 1270 VPGSFGIPGQEGFPGPPGISNISGYPGDKGSPGLDGVPGYPGPQGQPGIPAPPGSKGESG 1329
Query: 81 AMG 83
G
Sbjct: 1330 EAG 1332
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLP------GKDGIPGTNGTKT 77
+ G G DG GLPG +PG G+PG G+ G PG G P G DG PG+ G
Sbjct: 818 VPGTRGADGSPGLPGPKGDPGPQGLPGLTGLPGTPGTHGFPGPPGNRGPDGGPGSQGPLG 877
Query: 78 DHYAMGAD 85
A G D
Sbjct: 878 PPGARGED 885
>gi|350590049|ref|XP_003131139.3| PREDICTED: collagen alpha-1(IV) chain-like [Sus scrofa]
Length = 1665
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G K DH
Sbjct: 850 TGQSGLPGLPGQQGTPGLPGFPGPKGEMGVMGTPGQPGSPGPAGAPGLPGEKGDH 904
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 33/65 (50%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKDGL---------PGKDGIPGTN 73
G +G G G PGE PGLDG PG G G+PGK G PG DGIPG+
Sbjct: 1099 GSVGYPGSPGSPGEKGDKGLPGLDGAPGSKGEAGLPGKPGPTGPAGQKGEPGSDGIPGSA 1158
Query: 74 GTKTD 78
G K +
Sbjct: 1159 GEKGE 1163
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G++G+PG G PG G PG G + Y
Sbjct: 485 GFPGQPGAKGDRGLPGRDGLEGLPGPQGAPGLMGQPGAKGEPGEIY 530
>gi|426218625|ref|XP_004003543.1| PREDICTED: collagen alpha-2(IX) chain [Ovis aries]
Length = 785
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G GR G P PGL G+PG G G PG G PG+ G PG +G
Sbjct: 413 VKGSAGQAGRAGKPSHPGLSGVPGMPGTKGGPGDKGEPGRQGFPGVSG 460
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G G+DG+DG PG PG+ G G+ G G P GL G G+PGT G D
Sbjct: 395 ATGPPGIDGKDGTPGTPGVKGSAGQAGRAGKPSHPGLSGVPGMPGTKGGPGDK 447
>gi|365856598|ref|ZP_09396612.1| collagen triple helix repeat protein [Acetobacteraceae bacterium
AT-5844]
gi|363717789|gb|EHM01151.1| collagen triple helix repeat protein [Acetobacteraceae bacterium
AT-5844]
Length = 247
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
G+PG G DG PGR+G G PG+ G G+ G PG G++ GAD K DG
Sbjct: 71 GVPGRDGRDGAPGRDGERGPPGEKGERGEPGPPGERGSEGPEGPAGADGKDGRDG 125
>gi|348507278|ref|XP_003441183.1| PREDICTED: collagen alpha-1(IX) chain-like [Oreochromis niloticus]
Length = 892
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
SG G+DGR+G+PG PG G G+ G+ G G GLPG G+PG GT
Sbjct: 504 SGLPGVDGREGIPGMPGAKGSVGKPGIPGEVGLQGLPGLPGVPGPKGT 551
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 23/37 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL 63
I+G G DG DG PG G G PG G+ GIPG DGL
Sbjct: 258 IAGERGDDGEDGPPGPDGDAGKPGSGGLPGIPGNDGL 294
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G G G G PG GL G+PG G G+PG DG G G+PG G+
Sbjct: 478 GEPGPKGEQGGPGLRGLTGVPGPKGESGLPGVDGREGIPGMPGAKGS 524
Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GL G G GE GL G+ GR G+ G+PG G GK GIPG G +
Sbjct: 493 GLTGVPGPKGESGLPGVDGREGIPGMPGAKGSVGKPGIPGEVGLQ 537
>gi|432872845|ref|XP_004072153.1| PREDICTED: collagen alpha-1(XXVII) chain B-like [Oryzias latipes]
Length = 1604
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G+ G +GL G PG+DG+PG++G G+ G+ G G+ G PG +G + MG
Sbjct: 1215 LPGPRGVSGTEGLEGPPGVDGLPGQDGSKGVKGEQGKDGETGSPGKSGLQGPKGVMGLPG 1274
Query: 87 KSFSDG 92
S G
Sbjct: 1275 SQGSSG 1280
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
GR GL G+ G PG G +G+PG G+ G G +G PG DG+PG +G+K
Sbjct: 1190 GRPGLKGKPGTPGASGTKGPSGPEGLPGPRGVSGTEGLEGPPGVDGLPGQDGSKGVKGEQ 1249
Query: 83 GADTKSFSDG 92
G D ++ S G
Sbjct: 1250 GKDGETGSPG 1259
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 27/50 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G+ G G GL G PG G DG PG G PG+ GIPG G K +
Sbjct: 580 GHNGRKGQKGHSGPAGLPGEPGDRGDDGSPGAKGYPGRQGIPGVRGKKGE 629
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++G A +G G +G G GEPGLDG PG +G DG G G PG +G G G
Sbjct: 971 EMGAAGDVGPAGSFGEEGLSGQRGEPGLDGEPGPSGPDGAKGDKGEPGPEGPRGEQG 1027
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 28/52 (53%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
T SG G G G PG G G+ G G G PG+ GL GK G PG +GTK
Sbjct: 1156 TGPSGNQGERGEPGDPGRVGQTGVVGPRGEAGTPGRPGLKGKPGTPGASGTK 1207
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 29/57 (50%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D GR T + G G G G PG G G PG +G G G +GLPG G+ GT G
Sbjct: 1170 DPGRVGQTGVVGPRGEAGTPGRPGLKGKPGTPGASGTKGPSGPEGLPGPRGVSGTEG 1226
>gi|268529546|ref|XP_002629899.1| C. briggsae CBR-COL-61 protein [Caenorhabditis briggsae]
Length = 307
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLD--GIPGRNGMDGIPGKDGLPGKDG 68
+ GR G DG+ GLPG G G+PGR G G PGK+G PG+DG
Sbjct: 195 LPGRPGEDGKPGLPGRDGKKGRGLPGRMGRPGYPGKEGQPGRDG 238
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 9 QVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGR---NGMDGIPGKDGLPG 65
Q+ E + R +G G GRDG PG PG +G PG G DG PG+ G G
Sbjct: 132 QIFEPIRCPEPERDCIRCPAGLPGYPGRDGAPGLPGPNGKPGNPGYRGADGKPGRPGEQG 191
Query: 66 KDGIPGTNG 74
G+PG G
Sbjct: 192 NSGLPGRPG 200
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMD---GIPGKD-----GLPGKDGIPGTNGTK 76
G G DG+ G PGE G G+PGR G D G+PG+D GLPG+ G PG G +
Sbjct: 176 GYRGADGKPGRPGEQGNSGLPGRPGEDGKPGLPGRDGKKGRGLPGRMGRPGYPGKE 231
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ GR+G G G G+PG DG GR G+ G G +G PG G+ G NGT +
Sbjct: 218 LPGRMGRPGYPGKEGQPGRDGKSGRIGLPGPAGPEGKPGYPGMQGRNGTPGEQ 270
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMD---GIPGKDGLPGKDGIPGTNG 74
GL GR G PG PG +G PGR+G G+PG G GK G PG G
Sbjct: 217 GLPGRMGRPGYPGKEGQPGRDGKSGRIGLPGPAGPEGKPGYPGMQG 262
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR G GR GLPG G +G PG GM G ++G PG+ G+PG G
Sbjct: 235 GRDGKSGRIGLPGPAGPEGKPGYPGMQG---RNGTPGEQGLPGGPG 277
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
SGRIGL G G G+PG G+ GRN G PG+ GLPG G
Sbjct: 240 SGRIGLPGPAGPEGKPGYPGMQGRN---GTPGEQGLPGGPG 277
>gi|328787787|ref|XP_393523.4| PREDICTED: fibril-forming collagen alpha chain-like [Apis
mellifera]
Length = 1501
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGE------PGL---DGIPGRNGMDGIPGKDGLPGK 66
R + GR SG G G+DG+PGE PGL G PG G GIPG G+PG
Sbjct: 410 RGETGRPGQPGESGPQGPQGKDGIPGEKGSTGAPGLVGAPGFPGARGQAGIPGNPGIPGA 469
Query: 67 DGIPGTNGTK 76
G+PG G +
Sbjct: 470 KGMPGFPGER 479
>gi|73994098|ref|XP_534590.2| PREDICTED: collagen alpha-3(IV) chain [Canis lupus familiaris]
Length = 1643
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTKTDH 79
+G+ G PG+PGL G PGR G+DGIPG G+ PG G P +G K D
Sbjct: 519 EGQVGAPGDPGLRGHPGRKGLDGIPGTPGIKGPPGPKGEPALSGEKGDQ 567
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Query: 33 LDGRDGLPGEPGLDGI---PGRNGMDGI------PGKDGLPGKDGIPGTNGT 75
+ GR GLPG PGLDGI PG G GI PG GLPG G PG G
Sbjct: 454 IPGRPGLPGLPGLDGIKGIPGGQGAAGIKGSPGSPGSAGLPGFPGFPGAPGA 505
>gi|313226173|emb|CBY21316.1| unnamed protein product [Oikopleura dioica]
Length = 526
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 32/52 (61%), Gaps = 6/52 (11%)
Query: 28 SGRIGLDGRDGLPG---EPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTN 73
SG+ G DG G PG E G DG PGR+G DG PG+DG PG DG PG +
Sbjct: 273 SGQPGSDGERGQPGRDGERGRDGPPGRDGEDGPDGFPGEDGRPGPDGFPGED 324
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 36/83 (43%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ GR G+ G G PG PG DG G +G G PG GLPG G G +G G D
Sbjct: 429 VDGRDGVPGECGAPGAPGPDGDAGEDGNPGSPGPMGLPGPRGANGADGKPGPPGRKGPDG 488
Query: 87 KSFSDGVLPSVQRAIAAGLVIYR 109
K G A +V+ R
Sbjct: 489 KPGPQGFQGPAGANKKADMVLLR 511
>gi|291407756|ref|XP_002720230.1| PREDICTED: type IV alpha 6 collagen [Oryctolagus cuniculus]
Length = 1744
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 27 ISGRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ GL G G PG PGL G PG G G+PG GLPGKDG+PG G
Sbjct: 739 TPGQPGLRGNKGEPGNPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGKAG 792
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
G IGL G GLPG PG G+PG G DG+PGK GLPG GI
Sbjct: 667 GPIGLPGI-GLPGLPGPRGLPGDQGRDGLPGKQGLPGPPGI 706
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G G GLPG GL G+PG G+ G G+DGLPGK G+PG G G
Sbjct: 659 LPGEKGQRGPIGLPGI-GLPGLPGPRGLPGDQGRDGLPGKQGLPGPPGITLPCITSGLYG 717
Query: 87 KSFSDGV 93
S S G
Sbjct: 718 PSGSSGA 724
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 28/50 (56%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
+G S + G G DG GLPG PG G PG G+ G PG +G PGK G
Sbjct: 1456 VGLQGSKGLPGIPGKDGSSGLPGPPGALGDPGLPGLQGPPGFEGAPGKQG 1505
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G G GLPG PGL G G G G+PGK G G +G PG G+ + G
Sbjct: 1066 LPGNPGPSGSTGLPGLPGLKGSRGIMGFPGMPGKSGSQGLNGTPGLPGSPGPQGSKGDQG 1125
Query: 87 KSF 89
++F
Sbjct: 1126 QTF 1128
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG-----KDGIPGTNGTK 76
G G G G PG PG DG+PG+ G G+PG G+PG ++G PG G +
Sbjct: 766 FPGPRGEKGLPGFPGLPGKDGLPGKAGGPGLPGSKGVPGDIFGAENGAPGKQGLQ 820
>gi|194761528|ref|XP_001962981.1| GF14161 [Drosophila ananassae]
gi|190616678|gb|EDV32202.1| GF14161 [Drosophila ananassae]
Length = 1944
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 23 ISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
+ I G +G G G+PG+ GL G PG GMDG PG DG PG G
Sbjct: 756 VGDTIEGPVGAKGYPGIPGDYGLQGAPGEPGMDGEPGTDGNPGYKG 801
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 13 VHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGI 69
+ ++ D+G G G G G PG PG GIPG +G G I G DG PG G
Sbjct: 73 LGEKGDVGEYGGVGEKGHRGESGPQGQPGIPGNRGIPGEDGPSGPRGIDGCDGRPGSMGE 132
Query: 70 PGTNGTKTDHYAMGADTKSFSDG 92
PG G H MGA + + G
Sbjct: 133 PGKPGENGKHGQMGAPGNAGAPG 155
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I G GL G G PG EPG DG PG G G PG+ +PG GIPG G K
Sbjct: 772 IPGDYGLQGAPGEPGMDGEPGTDGNPGYKGQRGEPGQSVIPGDMGIPGRVGVK 824
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIP---GRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+ G DG G+PG G+ G P G+NG+DG PG G G DG PG G +
Sbjct: 294 GKPGKDGESGVPGNKGVKGAPGYDGQNGIDGRPGDRGEDGFDGTPGIQGPQ 344
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 31/65 (47%)
Query: 10 VLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
V +R GR G IG G G PG+ G G+PG G+ G PG DG G DG
Sbjct: 266 VGPAGERGPFGRNGLPGGRGDIGEPGERGKPGKDGESGVPGNKGVKGAPGYDGQNGIDGR 325
Query: 70 PGTNG 74
PG G
Sbjct: 326 PGDRG 330
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 32/58 (55%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
IGR GR GL+GR GL G+ G G G+ G+ G PG G+PG G GT G K
Sbjct: 1059 IGRKGEPGNPGRDGLNGRYGLKGQRGDRGFAGQAGIRGAPGSIGVPGYRGRNGTPGLK 1116
>gi|76253822|ref|NP_001029004.1| fibrillar collagen precursor [Ciona intestinalis]
gi|62945160|dbj|BAD97678.1| fibrillar collagen [Ciona intestinalis]
Length = 844
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++G+ G DGR G G+PG+ G GR G G PG+ G PG+ G PG G
Sbjct: 476 LTGKPGADGRQGKQGQPGVSGEDGRAGPAGAPGQKGPPGQIGFPGPKG 523
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 25/46 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G G GEPG G PG G GIPGK G GKDG PG G
Sbjct: 133 GPQGFQGPPGETGEPGSSGPPGHAGPSGIPGKPGKDGKDGRPGKTG 178
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPGKDGIPGTNGTK 76
G A + I G+ G DG+DG PG+ G G PG G G PG G G G G NG K
Sbjct: 154 GHAGPSGIPGKPGKDGKDGRPGKTGPIGTPGPQGPRGFSGTPGNPGPKGHKGHAGLNGLK 213
Query: 77 TDHYAMGAD 85
D GAD
Sbjct: 214 GDSGLAGAD 222
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+GR SG GL G GL G+PG DG G+ G G+ G+DG G G PG G
Sbjct: 461 DVGR------SGEPGLPGARGLTGKPGADGRQGKQGQPGVSGEDGRAGPAGAPGQKG 511
>gi|432911039|ref|XP_004078565.1| PREDICTED: collagen alpha-1(XXVIII) chain-like [Oryzias latipes]
Length = 1403
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKDGIPGTNGTKTDHYAMG 83
G G GLPG+PG DGIPG+ G G+P G DG PGK G PG G + D + G
Sbjct: 735 GAPGLVGLPGQPGEDGIPGQKGDIGLPGPRGPDGAPGK-GTPGQKGDRGDRGSRG 788
>gi|47222238|emb|CAG11117.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1403
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTKTDHYAMGADTKSFS 90
DG +G PG+PG G+PG G G PG GLPG G PG +G K + A G ++ +
Sbjct: 136 DGNNGRPGKPGDRGVPGPQGARGFPGTPGLPGMKGHRGYPGLDGRKGESGAAGPKGETGA 195
Query: 91 DGVLPSVQRAIAAGLVIYR 109
G S +A A G R
Sbjct: 196 RGAAGSPGQAGARGSPGER 214
>gi|307173871|gb|EFN64628.1| Collagen alpha-1(IV) chain [Camponotus floridanus]
Length = 1606
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G DGR GLPGEPG+ +G +G+PG+ G PG DG G+ G K + MG D
Sbjct: 838 GLAGFDGRPGLPGEPGVS----TDGFNGLPGQKGEPGFDGYDGSVGPKGEIGDMGPD 890
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 12/64 (18%)
Query: 25 TVISGRIGLDGRDGLP------------GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
T + G G+ GR GLP GEPG G PG +G+DG PG G G +GIPGT
Sbjct: 729 TGLQGYQGMYGRQGLPGAPGEKGEIGENGEPGPLGWPGFDGIDGAPGAKGESGDNGIPGT 788
Query: 73 NGTK 76
G +
Sbjct: 789 PGLR 792
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G G PG PGL G PG +G G+ G G PG +G+PG G K
Sbjct: 620 GWYGPKGDFGDPGPPGLRGRPGEDGPKGVRGAKGAPGYEGLPGLEGAK 667
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD----------GIPGTNG 74
IG G DG PG PGL G PG G G PG+ G PGK G+PGT G
Sbjct: 248 IGPSGPDGNPGLPGLSGPPGDRGDPGPPGEKGFPGKGIRIRGPPGERGLPGTPG 301
>gi|426360789|ref|XP_004047615.1| PREDICTED: collagen alpha-1(XXII) chain [Gorilla gorilla gorilla]
Length = 1626
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDHYAMG 83
G DGLPG+PGL G G G+ G PG+ GLPG G PG G K D G
Sbjct: 774 GEDGLPGKPGLRGEIGEQGLAGQPGEKGEAGLPGAPGFPGVRGEKGDQGEKG 825
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 24/69 (34%)
Query: 34 DGRDGLPGEPGLDGIPGRNG------------------------MDGIPGKDGLPGKDGI 69
+G G PGEPG G PG+ G G+PGK+G+PGK G
Sbjct: 1329 NGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKPGE 1388
Query: 70 PGTNGTKTD 78
PG G + D
Sbjct: 1389 PGFKGERGD 1397
>gi|291392326|ref|XP_002712665.1| PREDICTED: alpha 4 type IV collagen-like [Oryctolagus cuniculus]
Length = 1685
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+ G G +GR G PG PG+ G G GIPG+ GLPG G PG G K MG
Sbjct: 799 LKGPKGREGRTGFPGVPGIPGHSCERGTPGIPGQPGLPGAPGSPGVPGWKGPQGDMG 855
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 27/50 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G DG GL G PG G PG +DG G+ G PG+ IPG G + D
Sbjct: 671 GLPGFDGPPGLKGFPGFPGAPGPRCLDGQKGRRGPPGRSEIPGPPGFRGD 720
>gi|91793280|ref|YP_562931.1| triple helix repeat-containing collagen [Shewanella denitrificans
OS217]
gi|91715282|gb|ABE55208.1| Collagen triple helix repeat [Shewanella denitrificans OS217]
Length = 492
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 32/55 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G +GL G G+ G PG+DG GR+G DG G GL G DG+ G G + D MG
Sbjct: 295 GDLGLKGLTGITGNPGIDGRNGRDGKDGNAGLMGLQGPDGLQGPKGVRGDTGPMG 349
>gi|268564961|ref|XP_002639285.1| C. briggsae CBR-COL-64 protein [Caenorhabditis briggsae]
Length = 368
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 24/37 (64%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G PG PG DG G G DG PG G PG+DG PGT+G
Sbjct: 139 GEPGPPGEDGPAGEKGEDGQPGSPGKPGEDGEPGTDG 175
>gi|348553042|ref|XP_003462336.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-2(IX) chain-like
[Cavia porcellus]
Length = 891
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 30/52 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+G G+DG+DG PG PG+ G G+ G G PG GL G G PGT G D
Sbjct: 459 AAGSPGIDGKDGTPGIPGMKGSAGQAGRPGNPGHQGLAGVPGQPGTKGGPGD 510
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G GR G PG GL G+PG+ G G PG G PG+ G+PG +G
Sbjct: 477 MKGSAGQAGRPGNPGHQGLAGVPGQPGTKGGPGDKGEPGQQGLPGFSG 524
Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIP---GRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G G+PG+PG G P G G G+PG G PGK+G PG G
Sbjct: 488 GNPGHQGLAGVPGQPGTKGGPGDKGEPGQQGLPGFSGPPGKEGEPGPRG 536
>gi|321465369|gb|EFX76371.1| hypothetical protein DAPPUDRAFT_306230 [Daphnia pulex]
Length = 537
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
GE GL+G PGRNG G PGKDG +G+PG G K + A G S G
Sbjct: 187 GEAGLNGAPGRNGAPGTPGKDGF---NGLPGFAGPKGEAGAPGVTLPSNQPG 235
>gi|442619464|ref|NP_001262641.1| CG42342, isoform T [Drosophila melanogaster]
gi|440217506|gb|AGB96021.1| CG42342, isoform T [Drosophila melanogaster]
Length = 813
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNGTKTDHYAMG 83
SG G G+ G+PG PGLDG+ G G G G+ GLPG DGIPG G + + + G
Sbjct: 653 SGPSGPSGKAGIPGPPGLDGMKGAQGETGHKGERGDPGLPGTDGIPGQEGPRGEQGSRG 711
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 33/64 (51%), Gaps = 15/64 (23%)
Query: 27 ISGRIGLDGRDGLP------------GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I+G+ G DGRDG G GLDG+PG G++G P GLPG G PG G
Sbjct: 483 IAGKDGRDGRDGSKGEPGEPGEPGSLGPRGLDGLPGEPGIEGPP---GLPGYQGPPGEKG 539
Query: 75 TKTD 78
+ D
Sbjct: 540 DRGD 543
>gi|32816559|gb|AAP88581.1| collagen type IV alpha 3 chain [Canis lupus familiaris]
Length = 1631
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTKTDH 79
+G+ G PG+PGL G PGR G+DGIPG G+ PG G P +G K D
Sbjct: 507 EGQVGAPGDPGLRGHPGRKGLDGIPGTPGIKGPPGPKGEPALSGEKGDQ 555
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Query: 33 LDGRDGLPGEPGLDGI---PGRNGMDGI------PGKDGLPGKDGIPGTNGT 75
+ GR GLPG PGLDGI PG G GI PG GLPG G PG G
Sbjct: 442 IPGRPGLPGLPGLDGIKGIPGGQGAAGIKGSPGSPGSAGLPGFPGFPGAPGA 493
>gi|320542921|ref|NP_001189234.1| CG42342, isoform H [Drosophila melanogaster]
gi|318068790|gb|ADV37325.1| CG42342, isoform H [Drosophila melanogaster]
Length = 831
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNGTKTDHYAMG 83
SG G G+ G+PG PGLDG+ G G G G+ GLPG DGIPG G + + + G
Sbjct: 671 SGPSGPSGKAGIPGPPGLDGMKGAQGETGHKGERGDPGLPGTDGIPGQEGPRGEQGSRG 729
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 33/64 (51%), Gaps = 15/64 (23%)
Query: 27 ISGRIGLDGRDGLP------------GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I+G+ G DGRDG G GLDG+PG G++G P GLPG G PG G
Sbjct: 501 IAGKDGRDGRDGSKGEPGEPGEPGSLGPRGLDGLPGEPGIEGPP---GLPGYQGPPGEKG 557
Query: 75 TKTD 78
+ D
Sbjct: 558 DRGD 561
>gi|440681030|ref|YP_007155825.1| Collagen triple helix repeat-containing protein [Anabaena
cylindrica PCC 7122]
gi|428678149|gb|AFZ56915.1| Collagen triple helix repeat-containing protein [Anabaena
cylindrica PCC 7122]
Length = 298
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMD---GIPGKDGLPGKDGIPGTNGTK 76
+ G +GL G GL GE G++GIPG+ GMD GI G+ G G +G+PG G K
Sbjct: 178 LKGDMGLRGLPGLTGERGIEGIPGKPGMDGQRGIQGQRGERGYEGLPGRPGLK 230
>gi|301607027|ref|XP_002933125.1| PREDICTED: collagen alpha-1(VII) chain-like [Xenopus (Silurana)
tropicalis]
Length = 2671
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ GR GLDG+ G PG PG G G+ G G G+DG PG+D G G K D G DT
Sbjct: 1691 VDGRNGLDGKPGQPGSPGQRGDAGKQGDPGRDGEDGTPGED---GRKGDKGDVGPAGRDT 1747
Query: 87 KSFSDGVLPSVQR 99
+ + S R
Sbjct: 1748 ACLFNKSIASQGR 1760
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G PG PG DG PG++G G+PGK G+PG G+ GT G
Sbjct: 2101 GESGKPGVPGRDGSPGKDGELGLPGKMGMPGPPGLVGTRG 2140
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 31/47 (65%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
SG+ G+ GRDG PG+ G G+PG+ GM G PG G G+ G PGT G
Sbjct: 2103 SGKPGVPGRDGSPGKDGELGLPGKMGMPGPPGLVGTRGEAGEPGTPG 2149
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G+DGR+GL G+PG G PG+ G G G G G+DG PG +G K D
Sbjct: 1690 GVDGRNGLDGKPGQPGSPGQRGDAGKQGDPGRDGEDGTPGEDGRKGDK 1737
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 29 GRIGLDGRDGLPG------EPG---LDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G GL G+DG+PG EPG L GI G GM G+ G+DG G G+ G +GTK D
Sbjct: 2455 GEPGLSGKDGVPGMRGEKGEPGIHGLKGIKGDRGMKGLCGQDGEKGDKGMIGVDGTKGDK 2514
Query: 80 YAMGADTKSFSDGVLPSVQRAIAAG 104
+ G + V + A G
Sbjct: 2515 GSPGMTEDEVRNFVRQEMSHHCACG 2539
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+R ++G A T G G G++G PG+ PG G+ G+ G G G +G PG+ GIPG
Sbjct: 1539 ERGNVGLAGKTGQKGEPGEPGQNGEPGKSGPPGQIGLRGKEGDRGEKGDEGTPGESGIPG 1598
Query: 72 TNGTKTDHYAMGADTKSFSDGVLPSV 97
NG + G G + SV
Sbjct: 1599 KNGERGLRGTQGPQGPQGKPGTVESV 1624
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 22 AISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ +V++G G G G PGE G+ G G G +G+PG+ GL G G PG G D
Sbjct: 1620 TVESVVAGAKGEKGDAGDPGEHGMKGAKGEAGANGLPGERGLEGLRGPPGPRGETGDR 1677
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G+ G G+PG DGIPG G G PG PG+ G PG +G K +
Sbjct: 1226 GQKGETGDPGTDGIPGSPGRPGNPGTPASPGERGSPGPSGPKGEK 1270
>gi|350418539|ref|XP_003491890.1| PREDICTED: collagen alpha-2(IV) chain-like [Bombus impatiens]
Length = 1839
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 17/100 (17%)
Query: 4 VQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG---- 59
++G + +H R+ + G +G G G PG PG G+PG G G PG
Sbjct: 1226 IRGEQGFIGLHGRKGM--------KGDMGFPGPVGFPGVPGFPGLPGDRGPQGFPGLPGE 1277
Query: 60 -----KDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGVL 94
+DGLPG DG+PGT G A G + G++
Sbjct: 1278 LAEPSEDGLPGLDGLPGTPGIPGQKGAPGEYGYNGPKGIM 1317
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GLPG PG+ GI G G DGIPG+ G PG +G+PG G +
Sbjct: 1456 GLPGLPGFPGIQGITGEQGEDGIPGRKGEPGMEGLPGLPGPE 1497
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G G G+ GE G DGIPGR G G+ G GLPG +G+ G+ G A+G
Sbjct: 1457 LPGLPGFPGIQGITGEQGEDGIPGRKGEPGMEGLPGLPGPEGVVGSPGYPGLRGAIGRQG 1516
Query: 87 KSFSDGV 93
S G+
Sbjct: 1517 PPGSPGM 1523
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G+PG PG +G+ G +G+DG G DG G G+PG +G +
Sbjct: 112 GFPGAPGIPGNPGPEGVMGPDGLDGCNGTDGRAGAPGLPGMHGER 156
>gi|56754102|gb|AAW25240.1| unknown [Schistosoma japonicum]
Length = 457
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 27/43 (62%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G G+PG+DG+PG G DG PG G PGKDG PG G
Sbjct: 101 GPSGPRGEVGDPGVDGVPGGKGEDGQPGLPGRPGKDGSPGRQG 143
>gi|226490252|emb|CAX69368.1| Collagen alpha-2(V) chain precursor [Schistosoma japonicum]
Length = 457
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 27/43 (62%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G G+PG+DG+PG G DG PG G PGKDG PG G
Sbjct: 101 GPSGPRGEVGDPGVDGVPGGKGEDGQPGLPGRPGKDGSPGRQG 143
>gi|426375955|ref|XP_004054779.1| PREDICTED: collagen alpha-2(IV) chain [Gorilla gorilla gorilla]
Length = 1712
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDG------LPG 65
DR G S + G GL G+ GLPG +PGL G PG +G G PG++G +PG
Sbjct: 801 DRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGPPGLHGFPGAPGQEGPLGLPGIPG 860
Query: 66 KDGIPGTNGTKTDHYAMG 83
++G+PG G D A G
Sbjct: 861 REGLPGDRGDPGDTGAPG 878
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 31/60 (51%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DR D G G G G DG+PG PGL G G GMDG G GL G+ G PG+ G
Sbjct: 888 DRGDAGFTGERGHPGSPGFKGIDGMPGTPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKG 947
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
+ G G G +G PG G G PG++G+ G PG G+PG G PG G K D A+
Sbjct: 498 LPGPKGFAGINGEPGRKGDKGDPGQHGLPGFPGLKGVPGNVGAPGPKGAKGDSRAI 553
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 29 GRIGL---DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GRIGL G DG PG PGL G PG G+ G+ GLPG G PG+ G+
Sbjct: 1167 GRIGLPGGKGDDGWPGAPGLPGFPGLRGIRGL---HGLPGTKGFPGSPGS 1213
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 25 TVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
T + G GL G+ G PG PG G PGR G+ G G DG PG G+PG G +
Sbjct: 1139 TGVQGPPGLKGQTGFPGLTGPPGSQGEPGRIGLPGGKGDDGWPGAPGLPGFPGLR 1193
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 28/50 (56%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
T G G GR GLPG G DG PG G+ G PG G+ G G+PGT G
Sbjct: 1157 TGPPGSQGEPGRIGLPGGKGDDGWPGAPGLPGFPGLRGIRGLHGLPGTKG 1206
>gi|410491337|ref|YP_006906559.1| putative minor tail protein [Propionibacterium phage P101A]
gi|407302011|gb|AFT97567.1| putative minor tail protein [Propionibacterium phage P101A]
Length = 268
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGM---DGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+ GR G++G GL G G G PG NG+ DG+PG +G G+DG+PG G + G
Sbjct: 115 VRGRDGVNGSAGLVGPVGPQGSPGLNGVKGPDGLPGANGSDGRDGVPGRAGADGVNGVDG 174
Query: 84 ADTKSFSDG 92
AD + S G
Sbjct: 175 ADGRDGSAG 183
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 32 GLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G DGLPG G DG+PGR G DG+ G DG G+DG G G
Sbjct: 141 GVKGPDGLPGANGSDGRDGVPGRAGADGVNGVDGADGRDGSAGERG 186
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+ G G DGRDG+PG G DG+ NG+DG G+DG G+ G G +G A G
Sbjct: 148 LPGANGSDGRDGVPGRAGADGV---NGVDGADGRDGSAGERGDVGPSGPAGPQGAQG 201
>gi|114650645|ref|XP_001136859.1| PREDICTED: collagen alpha-2(IV) chain isoform 2 [Pan troglodytes]
Length = 1711
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDG------LPG 65
DR G S + G GL G+ GLPG +PGL G PG +G G PG++G +PG
Sbjct: 800 DRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGPPGLHGFPGAPGQEGPLGLPGIPG 859
Query: 66 KDGIPGTNGTKTDHYAMG 83
++G+PG G D A G
Sbjct: 860 REGLPGDRGDPGDTGAPG 877
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 31/60 (51%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DR D G G G G DG+PG PGL G G GMDG G GL G+ G PG+ G
Sbjct: 887 DRGDAGFTGERGHPGSPGFKGIDGMPGTPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKG 946
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 29/47 (61%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GRIGL G G G PG G+PG G+ GI G GLPG G PG+ G+
Sbjct: 1166 GRIGLPGGKGDDGWPGAPGLPGFPGLRGIRGLHGLPGTKGFPGSPGS 1212
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G G +G PG G G PG++G+ G PG G+PG G PG G K D
Sbjct: 497 LPGPKGFAGINGEPGRKGDKGDPGQHGLPGFPGLKGVPGNVGAPGPKGAKGD 548
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 25 TVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
T + G GL G+ G PG PG G PGR G+ G G DG PG G+PG G +
Sbjct: 1138 TGVQGPPGLKGQTGFPGLTGPPGSQGEPGRIGLPGGKGDDGWPGAPGLPGFPGLR 1192
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 28/50 (56%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
T G G GR GLPG G DG PG G+ G PG G+ G G+PGT G
Sbjct: 1156 TGPPGSQGEPGRIGLPGGKGDDGWPGAPGLPGFPGLRGIRGLHGLPGTKG 1205
>gi|90415840|ref|ZP_01223773.1| putative outer membrane protein [gamma proteobacterium HTCC2207]
gi|90332214|gb|EAS47411.1| putative outer membrane protein [gamma proteobacterium HTCC2207]
Length = 1157
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ D G T G G DG DG G+ G+ G+ G G G+ G DG G G G++G
Sbjct: 372 KGDTGAKGDTGSQGVAGTDGSDGAKGDQGIQGVKGDTGSQGVAGTDGAKGDAGADGSDGA 431
Query: 76 KTDHYAMG 83
K D A G
Sbjct: 432 KGDTGAKG 439
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G +G DG G+ G+ G+ G G G+ G DG G G GTNGT
Sbjct: 499 GVAGTNGSDGAKGDQGIQGVKGDTGSQGVAGTDGATGAKGDAGTNGTN 546
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 35/78 (44%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ D G T G G DG DG G+ G+ G+ G G G+ G DG G G G G
Sbjct: 432 KGDTGAKGDTGSQGVAGTDGSDGAKGDQGIQGVKGDTGSQGVAGTDGTDGAKGDQGIQGV 491
Query: 76 KTDHYAMGADTKSFSDGV 93
K D + G + SDG
Sbjct: 492 KGDTGSQGVAGTNGSDGA 509
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 24/50 (48%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G DG DG G+ G G G G+ G G DG G GI G G K D
Sbjct: 205 GDAGADGSDGAKGDTGAKGDTGSQGVAGTDGTDGAKGDQGIQGVKGDKGD 254
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 24/50 (48%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G DG DG G+ G G G G+ G G DG G GI G G K D
Sbjct: 283 GDAGADGSDGAKGDTGAKGDTGSQGVAGTDGTDGAKGDQGIQGVKGDKGD 332
>gi|74008065|ref|XP_850954.1| PREDICTED: collagen alpha-6(IV) chain isoform 2 [Canis lupus
familiaris]
Length = 1689
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 27 ISGRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G+ GL G G PG PGL G PG G G+PG GLPGKDG+PG G+
Sbjct: 683 TPGQPGLRGNKGEPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGKLGSPGLPG 742
Query: 81 AMGADTKSF 89
GA F
Sbjct: 743 PKGAPGDIF 751
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 37/75 (49%), Gaps = 18/75 (24%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKD------------ 61
G S +G+ GL G GLPG PGL G+PG G+ G+PG
Sbjct: 847 GETGSPASAGKRGLPGLKGLPGSPGLIGFLGSSGLPGNTGLPGLPGPKGEKGSVGLVGFP 906
Query: 62 GLPGKDGIPGTNGTK 76
G+PG GIPGT+G K
Sbjct: 907 GMPGLPGIPGTSGIK 921
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI---PGTNG 74
D+G S G++G+ G GLPG PGL GI G G G+PG G PG G PG G
Sbjct: 1102 DVGLPGSKGEDGKVGISGDLGLPGSPGLPGIAGMRGNPGLPGSPGHPGATGTLGPPGLIG 1161
Query: 75 TK 76
TK
Sbjct: 1162 TK 1163
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GLPG PG G+PG G+DG+PG+ GLPG GI
Sbjct: 619 GLPGSPGPRGLPGDQGIDGLPGQQGLPGLPGI 650
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIP---GRNGMDGIPGKDGLPGKDGIPGTNG 74
IGRA + G IGL G GL G PG+ G P G +G G+ G GLPG G+PG+ G
Sbjct: 1012 IGRA---GLPGSIGLRGLPGLKGSPGITGFPGIAGESGSQGLNGAPGLPGASGLPGSKG 1067
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
++G G+ G GL G GL G+PG++G++GIPG G G G+PG G A G
Sbjct: 1391 LTGDPGVQGPVGLQGSKGLPGVPGKDGLNGIPGPPGALGDPGLPGLQGPPGFEGAPG 1447
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G +GL G GLPG PG DG+ PG G G+PG G PG +G PG G
Sbjct: 1397 VQGPVGLQGSKGLPGVPGKDGLNGIPGPPGALGDPGLPGLQGPPGFEGAPGKKG 1450
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 29 GRIGLDGRDGLP------GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G+ GL G G P G PGL G+PG G+ G G GLPG G+PG G K + ++
Sbjct: 841 GKKGLRGETGSPASAGKRGLPGLKGLPGSPGLIGFLGSSGLPGNTGLPGLPGPKGEKGSV 900
Query: 83 G 83
G
Sbjct: 901 G 901
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGKDGLPGKDGIPG 71
D+G S + G G+ G GLPG PG G PG G G PG GL G +G+PG
Sbjct: 1120 DLGLPGSPGLPGIAGMRGNPGLPGSPGHPGATGTLGPPGLIGTKGFPGLPGLHGLNGLPG 1179
Query: 72 TNGT 75
T GT
Sbjct: 1180 TKGT 1183
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 17/62 (27%)
Query: 27 ISGRIGLDGRDGLPGE---PGL--------------DGIPGRNGMDGIPGKDGLPGKDGI 69
+ G GL G+DGLPG+ PGL +G PG G+ G+PG GLPG G+
Sbjct: 719 LPGFPGLPGKDGLPGKLGSPGLPGPKGAPGDIFGAENGSPGEQGLQGLPGDRGLPGDSGL 778
Query: 70 PG 71
PG
Sbjct: 779 PG 780
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
+G S + G G DG +G+PG PG G PG G+ G PG +G PGK G
Sbjct: 1401 VGLQGSKGLPGVPGKDGLNGIPGPPGALGDPGLPGLQGPPGFEGAPGKKG 1450
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 12/60 (20%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIP------------GKDGLPGKDGIPGTNGTK 76
G G G GLPG+ G+DG+PG+ G+ G+P G GLPG G PG G +
Sbjct: 619 GLPGSPGPRGLPGDQGIDGLPGQQGLPGLPGITLPCIIPETYGLSGLPGAPGFPGPKGAR 678
>gi|119627636|gb|EAX07231.1| collagen, type IX, alpha 2, isoform CRA_e [Homo sapiens]
Length = 371
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G G++G+DG PG PG+ G G+ G G PG GL G G PGT G D
Sbjct: 206 TGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQ 257
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPG---RNGMDGIPGKDGLPGKDGIPGTNGTK 76
G A G G G G+PG+PG G PG G G+PG G PGK+G PG G
Sbjct: 225 GSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQGEPGPQGLPGFSGPPGKEGEPGPRGEI 284
Query: 77 TDHYAMGADTKSFSDGVLP 95
MG ++ +G P
Sbjct: 285 GPQGIMGQKVSAWHNGPSP 303
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G G+ G PG GL G+PG+ G G PG G PG G+PG +G
Sbjct: 223 MKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQGEPGPQGLPGFSG 270
>gi|410300676|gb|JAA28938.1| collagen, type IV, alpha 2 [Pan troglodytes]
gi|410338669|gb|JAA38281.1| collagen, type IV, alpha 2 [Pan troglodytes]
Length = 1711
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDG------LPG 65
DR G S + G GL G+ GLPG +PGL G PG +G G PG++G +PG
Sbjct: 800 DRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGPPGLHGFPGAPGQEGPLGLPGIPG 859
Query: 66 KDGIPGTNGTKTDHYAMG 83
++G+PG G D A G
Sbjct: 860 REGLPGDRGDPGDTGAPG 877
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 31/60 (51%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DR D G G G G DG+PG PGL G G GMDG G GL G+ G PG+ G
Sbjct: 887 DRGDAGFTGERGHPGSPGFKGIDGMPGTPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKG 946
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 29 GRIGL---DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GRIGL G DG PG PGL G PG G+ G+ GLPG G PG+ G+
Sbjct: 1166 GRIGLPGGKGDDGWPGAPGLPGFPGLRGIRGL---HGLPGTKGFPGSPGS 1212
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G G +G PG G G PG++G+ G PG G+PG G PG G K D
Sbjct: 497 LPGPKGFAGINGEPGRKGDKGDPGQHGLPGFPGLKGVPGNVGAPGPKGAKGD 548
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 25 TVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
T + G GL G+ G PG PG G PGR G+ G G DG PG G+PG G +
Sbjct: 1138 TGVQGPPGLKGQTGFPGLTGPPGSQGEPGRIGLPGGKGDDGWPGAPGLPGFPGLR 1192
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 28/50 (56%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
T G G GR GLPG G DG PG G+ G PG G+ G G+PGT G
Sbjct: 1156 TGPPGSQGEPGRIGLPGGKGDDGWPGAPGLPGFPGLRGIRGLHGLPGTKG 1205
>gi|397524286|ref|XP_003832131.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-2(IV) chain [Pan
paniscus]
Length = 1711
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDG------LPG 65
DR G S + G GL G+ GLPG +PGL G PG +G G PG++G +PG
Sbjct: 800 DRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGPPGLHGFPGAPGQEGPLGLPGIPG 859
Query: 66 KDGIPGTNGTKTDHYAMG 83
++G+PG G D A G
Sbjct: 860 REGLPGDRGDPGDTGAPG 877
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 31/60 (51%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DR D G G G G DG+PG PGL G G GMDG G GL G+ G PG+ G
Sbjct: 887 DRGDAGFTGERGHPGSPGFKGIDGMPGTPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKG 946
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 29 GRIGL---DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GRIGL G DG PG PGL G PG G+ G+ GLPG G PG+ G+
Sbjct: 1166 GRIGLPGGKGDDGWPGAPGLPGFPGLRGIRGL---HGLPGTKGFPGSPGS 1212
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G G +G PG G G PG++G+ G PG G+PG G PG G K D
Sbjct: 497 LPGPKGFAGINGEPGRKGDKGDPGQHGLPGFPGLKGVPGNVGAPGPKGAKGD 548
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 25 TVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
T + G GL G+ G PG PG G PGR G+ G G DG PG G+PG G +
Sbjct: 1138 TGVQGPPGLKGQTGFPGLTGPPGSQGEPGRIGLPGGKGDDGWPGAPGLPGFPGLR 1192
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 28/50 (56%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
T G G GR GLPG G DG PG G+ G PG G+ G G+PGT G
Sbjct: 1156 TGPPGSQGEPGRIGLPGGKGDDGWPGAPGLPGFPGLRGIRGLHGLPGTKG 1205
>gi|443697255|gb|ELT97790.1| hypothetical protein CAPTEDRAFT_226710 [Capitella teleta]
Length = 654
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 28 SGRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
SG GLDG GLPG+ PG+DG PG G G G GLPG G+ G G K D
Sbjct: 244 SGYPGLDGTKGLPGQAGDPGRPGMDGFPGEKGSMGPAGPQGLPGPRGLTGVRGDKGDR 301
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GLDG G PG G G+PG GM G+PG G PG+ GI G G +
Sbjct: 329 GMPGLDGPAGFPGAKGDLGMPGDPGMPGLPGDRGEPGRPGISGEKGDR 376
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G +G G GLPG GL G+ G G G+PGK GL G G+PG G +
Sbjct: 275 GSMGPAGPQGLPGPRGLTGVRGDKGDRGLPGKGGLTGPPGVPGATGAR 322
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I G G G +G GEPG +G P GM G+ G G PG+ G PG G+K +
Sbjct: 109 IQGERGFPGEEGPAGEPGDEGEP---GMPGLSGPIGPPGRSGFPGAPGSKGE 157
>gi|442619462|ref|NP_001247141.2| CG42342, isoform S [Drosophila melanogaster]
gi|440217505|gb|AFH06459.2| CG42342, isoform S [Drosophila melanogaster]
Length = 808
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNGTKTDHYAMG 83
SG G G+ G+PG PGLDG+ G G G G+ GLPG DGIPG G + + + G
Sbjct: 648 SGPSGPSGKAGIPGPPGLDGMKGAQGETGHKGERGDPGLPGTDGIPGQEGPRGEQGSRG 706
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 33/64 (51%), Gaps = 15/64 (23%)
Query: 27 ISGRIGLDGRDGLP------------GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I+G+ G DGRDG G GLDG+PG G++G P GLPG G PG G
Sbjct: 478 IAGKDGRDGRDGSKGEPGEPGEPGSLGPRGLDGLPGEPGIEGPP---GLPGYQGPPGEKG 534
Query: 75 TKTD 78
+ D
Sbjct: 535 DRGD 538
>gi|432092326|gb|ELK24946.1| Collagen alpha-1(IV) chain, partial [Myotis davidii]
Length = 1600
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 30/55 (54%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG G G+ G PG PG G+ G G+ G PG+ G PG G PG G K DH
Sbjct: 785 TGQSGLPGPPGQQGTPGLPGFQGLKGEMGVMGTPGQPGSPGPAGTPGFPGEKGDH 839
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G++G+PG G PG G PG G + Y
Sbjct: 442 GFPGQPGAKGEKGLPGRDGLEGLPGPQGSPGLMGQPGAKGEPGEIY 487
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 22/38 (57%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
G G DGLPG PG G G G G PG+ GLPG+ G
Sbjct: 577 GPPGADGLPGSPGFQGPQGDRGFPGTPGRPGLPGEKGA 614
Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E D D G+ + G G G GLPG+ G G PG+ G G PG G PG G+PG
Sbjct: 880 EKGDPGDKGQVGPSGDKGSQGDPGTPGLPGKDGQAGHPGQPGPKGDPGISGTPGSPGLPG 939
Query: 72 TNGT 75
G+
Sbjct: 940 PKGS 943
>gi|256085618|ref|XP_002579013.1| Collagen alpha-1(V) chain precursor [Schistosoma mansoni]
Length = 1524
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G IG+DG DG+PG PG G PG G G+ G +G G+ G+PG G
Sbjct: 316 LPGPIGVDGTDGVPGAPGDPGAPGSQGSPGLQGPEGPKGQPGLPGPKG 363
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPGKDGIPGTNG 74
++G+ G GL GR GLPG PG DG G+ G +G G DG PG G PG +G
Sbjct: 955 NVGKPGEMGPPGNAGLPGRTGLPGPPGKDGQVGKQGPRGEEGPRGPDGNPGIQGPPGASG 1014
Query: 75 TK 76
K
Sbjct: 1015 VK 1016
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 30/52 (57%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
T + G GL G+ G PG+ G G PG+ G DG GK G PG+ G PG G K
Sbjct: 1028 TGMRGPPGLIGQPGPPGKQGSQGRPGKPGPDGFEGKRGPPGEIGAPGVPGNK 1079
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G IGL G+ G PG G G+PG G+DG G G PG G PG+ G+
Sbjct: 297 GSIGLQGQRGEPGPRGFMGLPGPIGVDGTDGVPGAPGDPGAPGSQGS 343
>gi|360043236|emb|CCD78649.1| putative collagen alpha-1(V) chain precursor [Schistosoma mansoni]
Length = 1524
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G IG+DG DG+PG PG G PG G G+ G +G G+ G+PG G
Sbjct: 316 LPGPIGVDGTDGVPGAPGDPGAPGSQGSPGLQGPEGPKGQPGLPGPKG 363
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPGKDGIPGTNG 74
++G+ G GL GR GLPG PG DG G+ G +G G DG PG G PG +G
Sbjct: 955 NVGKPGEMGPPGNAGLPGRTGLPGPPGKDGQVGKQGPRGEEGPRGPDGNPGIQGPPGASG 1014
Query: 75 TK 76
K
Sbjct: 1015 VK 1016
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 30/52 (57%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
T + G GL G+ G PG+ G G PG+ G DG GK G PG+ G PG G K
Sbjct: 1028 TGMRGPPGLIGQPGPPGKQGSQGRPGKPGPDGFEGKRGPPGEIGAPGVPGNK 1079
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G IGL G+ G PG G G+PG G+DG G G PG G PG+ G+
Sbjct: 297 GSIGLQGQRGEPGPRGFMGLPGPIGVDGTDGVPGAPGDPGAPGSQGS 343
>gi|395505252|ref|XP_003756957.1| PREDICTED: collagen alpha-1(XXIII) chain [Sarcophilus harrisii]
Length = 683
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 27 ISGRIGLDGR---DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G+ GR DGLPG+PGL G G G +G PG G G DG PGT G
Sbjct: 230 LKGEPGMPGRKGDDGLPGQPGLQGSVGPKGEEGSPGPQGKNGTDGSPGTKG 280
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 29/58 (50%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G A + G G G G PGEPGLDG PG G G K G G G+PG G K
Sbjct: 453 LGPAGPPGLIGLPGTKGEKGRPGEPGLDGFPGPRGEKGERSKQGEKGDRGVPGRKGAK 510
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGK---DGLPGKDGIPGTNGT 75
T G G G DGL GEPG G+ PG G G+PG+ DGLPG+ G+ G+ G
Sbjct: 198 TGKDGPRGPQGLDGLKGEPGPGGVMGPKGPPGLKGEPGMPGRKGDDGLPGQPGLQGSVGP 257
Query: 76 KTDHYAMGADTKSFSDG 92
K + + G K+ +DG
Sbjct: 258 KGEEGSPGPQGKNGTDG 274
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 32/66 (48%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G GL G G+PG G DG+PG+ G+ G G G G G G NGT G +
Sbjct: 226 GPPGLKGEPGMPGRKGDDGLPGQPGLQGSVGPKGEEGSPGPQGKNGTDGSPGTKGEPGER 285
Query: 89 FSDGVL 94
SDG L
Sbjct: 286 GSDGFL 291
>gi|380792333|gb|AFE68042.1| collagen alpha-5(IV) chain isoform 1 precursor, partial [Macaca
mulatta]
Length = 1279
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGEVGLPGDPGLPGQPGLPGIPGSKGE 700
>gi|345324770|ref|XP_001506111.2| PREDICTED: collagen alpha-1(VII) chain [Ornithorhynchus anatinus]
Length = 2697
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 12 EVHDRRDIGRAISTVISGRIG------LDGRDGLPGEPGLDGIPGRNGMDGIPGK---DG 62
E DR D G+ GR+G L G++G PGE G +G PG G+ G PG+ G
Sbjct: 1416 EQGDRGDPGQPGEKGEPGRVGPPGLTGLRGKEGEPGEKGDEGTPGELGLPGKPGERGPRG 1475
Query: 63 LPGKDGIPGTNGTKTD 78
LPG GIPG G D
Sbjct: 1476 LPGPRGIPGEKGNLGD 1491
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+ G +G G G PG G G G G G PG+ G+PGKDG+PG G K + +G
Sbjct: 2192 VKGELGDKGSGGFPGARGPMGQKGEAGELGNPGEPGMPGKDGVPGVRGDKGEMGFLG 2248
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G GLDGR+GL G+PG G G G G K G PG+DG+PG G + Y
Sbjct: 1577 GPPGLDGRNGLDGKPGALGPAGSRGEAG---KQGDPGRDGLPGLRGEQEKMYTY 1627
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTKTDH 79
G GL GR GLPG G G G G G+PGK+GL G G G G K DH
Sbjct: 2272 GDTGLHGRPGLPGRKGEPGELGAPGTSGLPGKEGLIGPKGDRGFDGQQGAKGDH 2325
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI---PGTNGTKTDHYAMGA 84
G G G +G PGE GL G PG G G+PG G+PG+ G PG +G A G+
Sbjct: 1447 EGEPGEKGDEGTPGELGLPGKPGERGPRGLPGPRGIPGEKGNLGDPGEDGQNGSPGAAGS 1506
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 32/61 (52%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSD 91
GLDG G G+PGL GIPG G +G+ G G G G G G K D G D ++ D
Sbjct: 1529 GLDGARGPKGDPGLPGIPGERGSEGLRGLPGSRGDSGERGPAGDKGDRGPPGLDGRNGLD 1588
Query: 92 G 92
G
Sbjct: 1589 G 1589
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 25/48 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G DG G G+ GL G PG G G PG+ G PG G+PG G
Sbjct: 2258 TKGACGQDGEKGNKGDTGLHGRPGLPGRKGEPGELGAPGTSGLPGKEG 2305
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 26/48 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G GL G PGL G G G G PG GLPGK+G+ G G +
Sbjct: 2266 GEKGNKGDTGLHGRPGLPGRKGEPGELGAPGTSGLPGKEGLIGPKGDR 2313
>gi|327267099|ref|XP_003218340.1| PREDICTED: collagen alpha-4(IV) chain-like [Anolis carolinensis]
Length = 1471
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+PG PGLDG G G++G+PG G+PG G PG G+K
Sbjct: 903 GIPGSPGLDGEKGSKGLNGLPGDQGIPGGQGKPGRQGSK 941
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+G + G G+ G G PG PGL G+PG NG+ G+PG+ G G G PG G
Sbjct: 708 DMGAPGPAGMKGVPGVPGTQGSPGPPGLRGNSGLPGENGLPGLPGQKGSKGMQGFPGFPG 767
Query: 75 TKTDHYAMGADTKSFSDGV 93
+ + A G + G+
Sbjct: 768 SDGEMGAPGVKGEEGQTGL 786
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG--------L 63
E D+ D R I G+ GL G G PGE +GI GR+G G+PG+ G L
Sbjct: 401 EKGDKGDPARIRIKGIKGQRGLRGEPGFPGE---NGIHGRDGEPGLPGEKGFKGDDGRAL 457
Query: 64 PGKDGIPGTNGTKTDHYAMGA 84
PG G PG G MG+
Sbjct: 458 PGDKGFPGAPGLPGSSGPMGS 478
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R D+GR S G +G G +PG GLDG+PG +PG +GL G+ G+ G
Sbjct: 55 EKGQRGDVGRPGSAGERGNMGATG---VPGFSGLDGVPG------LPGPEGLRGRPGLDG 105
Query: 72 TNGTKTD 78
NG++ D
Sbjct: 106 CNGSRGD 112
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 67
G GL G DGLPG G G PG G+ G+PG+DG PG +
Sbjct: 821 GEAGLPGEDGLPGIQGDKGSPGFQGIPGLPGRDGRPGTE 859
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 5 QGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIP 58
+G + R D G + I G G G G PG PG +G GR G+ IP
Sbjct: 508 KGQKGTTPPYTRADAGNPGAPGIKGSAGPKGLRGQPGRPGPNGFDGLKGRQGRPGVSNIP 567
Query: 59 GKDGLPGKDGIPGTNG 74
G +GL G+ G PG NG
Sbjct: 568 GPEGLRGETGDPGENG 583
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 25/42 (59%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
G G GLPGE GL GI G G G G GLPG+DG PGT
Sbjct: 818 GGKGEAGLPGEDGLPGIQGDKGSPGFQGIPGLPGRDGRPGTE 859
>gi|313225750|emb|CBY07224.1| unnamed protein product [Oikopleura dioica]
Length = 790
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 47 GIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+PG+NG G+PG+ G+ GK G+PG G
Sbjct: 535 GVPGKNGNSGLPGRPGMGGKTGLPGFPG 562
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+PG+ G G+PGR GM G G G PG+ G G G
Sbjct: 535 GVPGKNGNSGLPGRPGMGGKTGLPGFPGQAGASGEPG 571
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG 59
+G GL GR G+ G+ GL G PG+ G G PG
Sbjct: 540 NGNSGLPGRPGMGGKTGLPGFPGQAGASGEPG 571
Score = 34.7 bits (78), Expect = 6.5, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 16/76 (21%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNG---------------MDGIPGKDGLP 64
G+ ++ + GR G+ G+ GLPG PG G G G + G G G
Sbjct: 538 GKNGNSGLPGRPGMGGKTGLPGFPGQAGASGEPGPAGRPGQGGRPGPRGLQGPSGPRGAQ 597
Query: 65 GKDGIPGTNGTKTDHY 80
G G PG G +T+ Y
Sbjct: 598 GSSGGPG-RGIETEEY 612
>gi|313219985|emb|CBY30850.1| unnamed protein product [Oikopleura dioica]
Length = 790
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 47 GIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+PG+NG G+PG+ G+ GK G+PG G
Sbjct: 535 GVPGKNGNSGLPGRPGMGGKTGLPGFPG 562
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG 59
+G GL GR G+ G+ GL G PG+ G G PG
Sbjct: 540 NGNSGLPGRPGMGGKTGLPGFPGQAGASGEPG 571
Score = 34.7 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 16/76 (21%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNG---------------MDGIPGKDGLP 64
G+ ++ + GR G+ G+ GLPG PG G G G + G G G
Sbjct: 538 GKNGNSGLPGRPGMGGKTGLPGFPGQAGASGEPGPAGRPGQGGRPGPRGLQGPSGPRGAQ 597
Query: 65 GKDGIPGTNGTKTDHY 80
G G PG G +T+ Y
Sbjct: 598 GSSGGPG-RGIETEEY 612
>gi|56754945|gb|AAW25655.1| SJCHGC09298 protein [Schistosoma japonicum]
Length = 694
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 32/52 (61%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
T I G GL G+ G PG+ G G PG+ G DG GK G PG+ G+PG G+K
Sbjct: 205 TGIRGPPGLVGQPGPPGKQGSQGRPGKPGPDGFEGKRGPPGEMGLPGAPGSK 256
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGKDGIPGTNG 74
++G+ G GL GR GLPG PG DG G+ G +G G DG PG G PG++G
Sbjct: 132 NVGKPGEMGPPGNAGLPGRTGLPGPPGKDGQVGKQGPRGEEGPRGPDGNPGMQGPPGSSG 191
Query: 75 TK 76
K
Sbjct: 192 VK 193
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 29 GRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G G PGE PG G+PGR G+ G PGKDG GK G G G +
Sbjct: 125 GPTGPPGNVGKPGEMGPPGNAGLPGRTGLPGPPGKDGQVGKQGPRGEEGPR 175
>gi|427794227|gb|JAA62565.1| Putative a2iv collagen, partial [Rhipicephalus pulchellus]
Length = 1790
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 31/50 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
++G G G G+ GEPG G PGR G G PG DG G+ GIPG NG+K
Sbjct: 110 LTGDTGAIGPKGIRGEPGEPGFPGRPGAPGKPGLDGQFGEPGIPGCNGSK 159
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 27/43 (62%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GL G DG PG PGL G PG G G G+DGLPG G PGT G
Sbjct: 944 GLPGTDGFPGVPGLKGEPGAPGAPGPRGRDGLPGTRGQPGTPG 986
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKDGIPGTNGTKTDHYAMG 83
+ G G G GL GEPG G PG G DG+P G+ G PG DG PG+ G K + G
Sbjct: 945 LPGTDGFPGVPGLKGEPGAPGAPGPRGRDGLPGTRGQPGTPGLDGYPGSPGRKGEAGDFG 1004
Query: 84 A 84
A
Sbjct: 1005 A 1005
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDG------IPGKDGLPGKDGIPGTNGTKTDH 79
GR GL G G PG PGLDG PG G G PG DGL G+ G PG G K +
Sbjct: 971 GRDGLPGTRGQPGTPGLDGYPGSPGRKGEAGDFGAPGWDGLAGEPGYPGLKGVKGER 1027
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNG 74
G G+PG PG DG PG G+ G PG G P G+DG+PGT G
Sbjct: 938 GERGIPGLPGTDGFPGVPGLKGEPGAPGAPGPRGRDGLPGTRG 980
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 44 GLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G G+PG NG +G G G PG DG+PG G K DH
Sbjct: 766 GQPGLPGPNGKEGAKGARGSPGYDGLPGRQGEKGDH 801
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G GLDG DG PG +PGR G DG PG G PG G PG
Sbjct: 1151 FPGVAGLDGEDGFPG------VPGRPGPDGFPGLPGFPGLKGDPG 1189
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 28/52 (53%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G +GL G G PG PG G GR G G+ G+ G PG G PG G K D
Sbjct: 865 LPGILGLKGEQGQPGSPGNPGPAGRPGFAGLKGQRGEPGFVGYPGPKGVKGD 916
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 27 ISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G GL G G PG PG DG+PG G G PG DG PG PG G D A G
Sbjct: 951 FPGVPGLKGEPGAPGAPGPRGRDGLPGTRGQPGTPGLDGYPGS---PGRKGEAGDFGAPG 1007
Query: 84 AD 85
D
Sbjct: 1008 WD 1009
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 37/87 (42%), Gaps = 16/87 (18%)
Query: 8 LQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPG---------EPGLDGIPG---RNGMD 55
L E+ + D G + G G G DG PG EPG DG PG R G
Sbjct: 1229 LSTFEIS-KGDKGEPGQPGLPGSRGPPGDDGYPGLRGAKGQVGEPGYDGAPGIAGRPGPK 1287
Query: 56 GIPGKDGLPGKDGIPGTN---GTKTDH 79
G PG G PG +G P T+ G K D
Sbjct: 1288 GYPGNAGPPGPEGAPATDVYPGPKGDE 1314
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMD------GIPGKDGLPGKDGIPGTNGT 75
+ G G G G PG PG+DG PG G D GIPG+ G PG+DG PG +G+
Sbjct: 539 LRGPPGDQGIPGRPGVPGVDGRPGPRGDDCGYCPPGIPGERGAPGEDGRPGPDGS 593
>gi|17535685|ref|NP_496589.1| Protein ROL-1 [Caenorhabditis elegans]
gi|5832926|emb|CAB55014.1| Protein ROL-1 [Caenorhabditis elegans]
Length = 458
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 27/42 (64%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
I G+ GL G G PGEPG DG PG +G+ G PG+DG G G
Sbjct: 394 IPGKDGLGGDQGAPGEPGADGEPGMDGVPGNPGRDGTHGHGG 435
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 27/51 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G G G G PG PG DG+ G G G PG DG PG DG+PG G H
Sbjct: 381 GPRGRQGPRGAPGIPGKDGLGGDQGAPGEPGADGEPGMDGVPGNPGRDGTH 431
>gi|397497498|ref|XP_003819544.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(XXII) chain [Pan
paniscus]
Length = 1626
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDHYAMG 83
G DGLPG+PGL G G G+ G PG+ GLPG G PG G K D G
Sbjct: 774 GEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKG 825
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 24/69 (34%)
Query: 34 DGRDGLPGEPGLDGIPGRNG------------------------MDGIPGKDGLPGKDGI 69
+G G PGEPG G PG+ G G+PGK+G+PGK G
Sbjct: 1329 NGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKPGE 1388
Query: 70 PGTNGTKTD 78
PG G + D
Sbjct: 1389 PGFKGERGD 1397
>gi|403289633|ref|XP_003935951.1| PREDICTED: collagen alpha-6(IV) chain [Saimiri boliviensis
boliviensis]
Length = 1666
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 27 ISGRIGLDGRDGLPGEP--GLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G+ GLPG P GL G+PG G+ G GKDGLPG+ G PG+ G
Sbjct: 578 IPGLPGEKGQRGLPGLPGIGLPGLPGPRGLPGDKGKDGLPGQQGTPGSKG 627
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG---KDGIPGTNG 74
+G + SG G+ G+ GLPG PG G G G G G+ GLPG K G+PG G
Sbjct: 783 QVGEPGTPGSSGPYGIKGKSGLPGAPGFQGTSGHRGRKGTRGEKGLPGSVMKKGLPGLKG 842
Query: 75 TKTDHYAMGADTKSFSDGV--LPSV 97
+ +G S G+ LP++
Sbjct: 843 LPGNPGLVGLKGSPGSPGITGLPAL 867
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 28/53 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G G G G PG PG GIPG G+ GIPG G G G PGT G K D
Sbjct: 870 LKGEKGSVGSLGFPGIPGFPGIPGVRGLKGIPGSTGKIGLSGRPGTPGEKGDR 922
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD--GLPGKDGIPGTNGTKTD 78
+ G IG G G PG GL+G+PG G G PG G+PG G+PG G K +
Sbjct: 1133 LPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTPGPSITGVPGPAGLPGPKGEKGN 1186
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDG------IPGRNGMDGIPGKDGLPG 65
EV D+G + G IG+ G GLPG G +G +PG G G PG GL G
Sbjct: 1091 EVGVPGDVGLPGAPGFLGTIGIRGEPGLPGSSGHEGAIGPPGLPGLIGPKGFPGFPGLHG 1150
Query: 66 KDGIPGTNGT 75
+G+PGT GT
Sbjct: 1151 LNGLPGTKGT 1160
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 22/32 (68%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GLPG PG G+PG G DG+PG+ G PG GI
Sbjct: 597 GLPGLPGPRGLPGDKGKDGLPGQQGTPGSKGI 628
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
GR G G GLPG PGL G+PG G+ G+ G G PG G+P G K + ++
Sbjct: 818 GRKGTRGEKGLPGSVMKKGLPGLKGLPGNPGLVGLKGSPGSPGITGLPALPGLKGEKGSV 877
Query: 83 GA 84
G+
Sbjct: 878 GS 879
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRN--GMDGIPGKDGLP---GKDGIPGTNGT 75
G G G GLPGE G G+PG G+ G+PG GLP GKDG+PG GT
Sbjct: 571 GFPGEKGIPGLPGEKGQRGLPGLPGIGLPGLPGPRGLPGDKGKDGLPGQQGT 622
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 43 PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSF 89
P L G PG G G+PG GLPGKDG+PG G+ + GA F
Sbjct: 683 PELPGFPGPRGEKGLPGFPGLPGKDGLPGIIGSPGLPGSKGATGDIF 729
>gi|357619627|gb|EHJ72120.1| putative collagen alpha-2 precursor [Danaus plexippus]
Length = 1537
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIP------------GRNGMDGIPGKDGLPG 65
+ G ST G G G +GLPG PGL G+P G+ G G PG G PG
Sbjct: 867 ESGAPGSTGERGHPGPQGNNGLPGPPGLTGMPGLKGDRGYAGPKGQQGAQGSPGISGEPG 926
Query: 66 KDGIPGTNGTKTDHYAMG 83
+ G+PG G K H G
Sbjct: 927 QRGLPGQPGAKGAHGEQG 944
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 32/61 (52%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
R + GR + G GL GRDG PGE G+ G G G G PG G PG G PG GT
Sbjct: 445 RGEPGRNGQSGEVGPPGLAGRDGTPGEKGVQGQTGAAGPQGFPGPRGTPGVAGDPGLPGT 504
Query: 76 K 76
K
Sbjct: 505 K 505
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 28/47 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G G GLPG PGL G PGR G G+PG G PGKDG G G
Sbjct: 1177 NGADGPKGHAGLPGLPGLIGTPGRQGDRGLPGAIGPPGKDGDAGPRG 1223
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 37/78 (47%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+R G + S I G G G+ G PG G+ G G NG DG G GLPG G+ GT G
Sbjct: 1140 ERGPRGESGSPGIEGPQGPSGKQGPPGMDGIKGERGENGADGPKGHAGLPGLPGLIGTPG 1199
Query: 75 TKTDHYAMGADTKSFSDG 92
+ D GA DG
Sbjct: 1200 RQGDRGLPGAIGPPGKDG 1217
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GR G+ G+ G PGE G+ G GR G G+ G G PG G PG G + +H
Sbjct: 617 GRPGIPGKSGQPGERGIPGADGRPGEQGLQGLQGPPGLIGSPGERGLQGEH 667
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G GL G G PG GL G+ G +G+ G PG DG PG G PG G
Sbjct: 1034 GPSGLPGLTGAPGPQGLRGVQGESGVPGKPGADGAPGPIGAPGPQG 1079
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK------DGLPGKDGIPG 71
D GR+ G IG G +G GE G +G G G GIPG+ GLPG G PG
Sbjct: 987 DTGRSGPPGPQGLIGPQGPEGPKGERGAEGETGPQGQQGIPGQAGERGPSGLPGLTGAPG 1046
Query: 72 TNGTKTDHYAMGADTKSFSDGV 93
G + G K +DG
Sbjct: 1047 PQGLRGVQGESGVPGKPGADGA 1068
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 32/78 (41%), Gaps = 18/78 (23%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGI------------------PGRNGMDGIPGKDGLPG 65
S + G IG G G PG PGL G PGRNG G G GL G
Sbjct: 405 SPGLMGNIGKPGAPGFPGSPGLKGEQGAVGPKGSQGMQGPRGEPGRNGQSGEVGPPGLAG 464
Query: 66 KDGIPGTNGTKTDHYAMG 83
+DG PG G + A G
Sbjct: 465 RDGTPGEKGVQGQTGAAG 482
>gi|312378365|gb|EFR24963.1| hypothetical protein AND_10126 [Anopheles darlingi]
Length = 413
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G +G G PG PG+DG+PG G+ G PG+ G PG G+PG + T++D
Sbjct: 178 GPEGPAGQPGLPGVDGLPGPQGVAGQPGQVGSPGAPGLPGHSYTESD 224
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 20 GRAISTVIS-GRIGLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR + ++S G G G G+PGE G L G G G G+PG DGLPG G+ G G
Sbjct: 147 GRYLENLMSYGHRGPVGYTGIPGERGAGGLRGPEGPAGQPGLPGVDGLPGPQGVAGQPGQ 206
Query: 76 KTDHYAMGADTKSFSDGVLPSVQRAI 101
A G S+++ L + RA+
Sbjct: 207 VGSPGAPGLPGHSYTESDLQDICRAV 232
>gi|15214623|gb|AAH12438.1| Col1a2 protein [Mus musculus]
Length = 566
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G PG++G PG G DG PG DG PG+DG PG G +
Sbjct: 113 GSPGVNGAPGEAGRDGNPGSDGPPGRDGQPGHKGER 148
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 24 STVISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
S ++G G GRDG PG PG DG PG G G PG G G G PG +G+
Sbjct: 114 SPGVNGAPGEAGRDGNPGSDGPPGRDGQPGHKGERGYPGSIGPTGAAGAPGPHGS 168
>gi|18202526|sp|Q28668.1|CO1A2_RABIT RecName: Full=Collagen alpha-2(I) chain; AltName: Full=Alpha-2 type
I collagen; Flags: Precursor
gi|984642|dbj|BAA08391.1| alpha 2 type I collagen [Oryctolagus cuniculus]
gi|1582190|prf||2118229A collagen:SUBUNIT=alpha2:ISOTYPE=I
Length = 526
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G PG++G PG G DG PG DG PG+DG PG G +
Sbjct: 73 GSPGVNGAPGEAGRDGNPGSDGPPGRDGQPGHKGER 108
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 24 STVISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
S ++G G GRDG PG PG DG PG G G PG G G G PG G+
Sbjct: 74 SPGVNGAPGEAGRDGNPGSDGPPGRDGQPGHKGERGYPGNAGPVGAAGAPGPQGS 128
>gi|119920084|ref|XP_601826.3| PREDICTED: collagen alpha-6(IV) chain [Bos taurus]
gi|297492840|ref|XP_002699932.1| PREDICTED: collagen alpha-6(IV) chain [Bos taurus]
gi|296470961|tpg|DAA13076.1| TPA: collagen, type IV, alpha 6 [Bos taurus]
Length = 1690
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ GL G G PG PGL G PG +G G+PG GLPGKDG+PG G+
Sbjct: 687 GQPGLRGNKGDPGSPGLVHLPELPGFPGPHGEKGLPGFPGLPGKDGLPGKVGS 739
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 29/53 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+ G G G G PG PGL GIPG +G+ GIPG G G G G+ G K D
Sbjct: 894 LKGEKGSVGLTGFPGIPGLPGIPGASGLKGIPGSTGRVGPSGWAGSPGEKGDR 946
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 28/49 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+SGR G G GL G PGL G PG G GIPG+ G G G+PG G
Sbjct: 1012 LSGRPGPPGSTGLRGLPGLKGYPGIAGFQGIPGESGSQGLSGVPGLPGA 1060
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGKDGLPGKDGIPG 71
D+G S + G G+ G GLPG PG G PG G G PG GL G +G+PG
Sbjct: 1121 DVGLPGSLGLPGVAGMRGNPGLPGSPGHPGATGPLGPPGLIGTKGFPGLPGLHGLNGLPG 1180
Query: 72 TNGT 75
T GT
Sbjct: 1181 TKGT 1184
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 28/50 (56%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
+G S + G G DG GLPG PG G PG G+ G PG +G PGK G
Sbjct: 1402 VGLQGSKGLPGIPGKDGASGLPGPPGALGDPGLPGLQGPPGFEGAPGKPG 1451
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G IGL G G PGL G+PG G G G GLPG G+PG G K + ++G
Sbjct: 848 GEIGLPASAGKRGLPGLKGLPGLPGPIGFLGNSGLPGATGLPGLPGLKGEKGSVG 902
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 26/49 (53%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G +GL G GLPG PG DG G G G G GLPG G PG G
Sbjct: 1398 VQGPVGLQGSKGLPGIPGKDGASGLPGPPGALGDPGLPGLQGPPGFEGA 1446
Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIP---GRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G IG G GLPG GL G+P G G G+ G G+PG GIPG +G K
Sbjct: 870 LPGPIGFLGNSGLPGATGLPGLPGLKGEKGSVGLTGFPGIPGLPGIPGASGLK 922
>gi|341886846|gb|EGT42781.1| hypothetical protein CAEBREN_10450 [Caenorhabditis brenneri]
Length = 372
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 24/37 (64%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G PG PG DG G G DG PG G PG+DG PGT+G
Sbjct: 138 GEPGPPGEDGPAGERGADGEPGSPGKPGEDGEPGTDG 174
>gi|341888827|gb|EGT44762.1| CBN-MEC-5 protein [Caenorhabditis brenneri]
Length = 343
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G+ G+ G PG G G G GM+G+PG +GLPG G PG+ G
Sbjct: 147 LKGDTGIPGKVGEPGSTGQPGSKGEKGMEGLPGTNGLPGAPGWPGSKG 194
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 9/56 (16%)
Query: 25 TVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPG------KDGLPGKDGIPG 71
T I G++G G G PG E G++G+PG NG+ G PG +DGLPG+ G PG
Sbjct: 151 TGIPGKVGEPGSTGQPGSKGEKGMEGLPGTNGLPGAPGWPGSKGEDGLPGRPGSPG 206
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
D+GR ++G G G G GE DG+PGR+GM GIP G+ G G G G K
Sbjct: 69 DLGRPGPPGMNGSPGFTGAKGEKGERAEDGMPGRDGMQGIP---GVKGDMGPIGPTGMKG 125
Query: 78 DHYAMG 83
D +MG
Sbjct: 126 DKGSMG 131
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 32/61 (52%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ D+G T + G G G G G+ G G+PG G GIPGK G PG G PG+ G
Sbjct: 112 KGDMGPIGPTGMKGDKGSMGFPGQKGDGGNSGVPGLKGDTGIPGKVGEPGSTGQPGSKGE 171
Query: 76 K 76
K
Sbjct: 172 K 172
>gi|308472987|ref|XP_003098720.1| hypothetical protein CRE_04165 [Caenorhabditis remanei]
gi|308268320|gb|EFP12273.1| hypothetical protein CRE_04165 [Caenorhabditis remanei]
Length = 302
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 28/49 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G+DG PGE G G G G+ G PGKDG G DG+ G NG +
Sbjct: 214 EGPAGAPGQDGAPGEDGAPGQAGSEGIAGAPGKDGEAGPDGVAGENGIE 262
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G+ G G DG PG+ G +GI G G DG G DG+ G++GI G GT + T
Sbjct: 221 GQDGAPGEDGAPGQAGSEGIAGAPGKDGEAGPDGVAGENGIEGAPGTDAAYCPCPPRTVG 280
Query: 89 FSDGVLPSVQRA 100
+ + P +++
Sbjct: 281 YGEVEQPQAEQS 292
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
+G G G++G G G G G G G PG+DG PG+DG PG G++ A G D +
Sbjct: 191 AGAPGPAGKNGQRGA-GAPGPQGPEGPAGAPGQDGAPGEDGAPGQAGSEGIAGAPGKDGE 249
Query: 88 SFSDGV 93
+ DGV
Sbjct: 250 AGPDGV 255
>gi|147905732|ref|NP_001083544.1| collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV,
autosomal dominant) precursor [Xenopus laevis]
gi|38173761|gb|AAH60753.1| MGC69046 protein [Xenopus laevis]
Length = 1464
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPG------------LDGIPGRNGMDGIPGKDGLPGKD 67
GR + +SG G DG+ G G PG L+G PG +G DG G DGLPG+D
Sbjct: 965 GRPGAPGLSGSKGEDGKPGTNGSPGERGPAGAPGPAGLNGAPGESGRDGNSGSDGLPGRD 1024
Query: 68 GIPGTNGTKTDHYAMGA 84
G G G + ++ + GA
Sbjct: 1025 GSHGPKGDRGENGSPGA 1041
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+G+ G GEPG +G+PG G G PG G PG +GIPG
Sbjct: 463 EGKKGTNGEPGTNGVPGTPGERGTPGFRGPPGSNGIPG 500
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPG-KDGIPGTNGTKTDHYAMGADTKSFSD 91
G+PG GIPGRNG G PG G PG +G P T +Y+ D+KS D
Sbjct: 113 GDPGTPGIPGRNGEPGTPGSPGAPGVCEGCPSTG--NFPNYSPQYDSKSGYD 162
>gi|440893705|gb|ELR46375.1| Collagen alpha-1(VII) chain [Bos grunniens mutus]
Length = 2948
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GLDGR GL G+PG G PG NG GK G PG+DG+PG G +
Sbjct: 1771 GPPGLDGRSGLDGKPGASGPPGPNGAM---GKAGDPGRDGLPGLRGEQ 1815
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK--DGI 69
E D + GR SG G +GRDG GE G G PG G G+PG+ G PG+ G+
Sbjct: 1844 EPGDPGEDGRKGEKGDSGAPGREGRDGPKGERGAPGSPGLQGPPGLPGQVGPPGQGFPGV 1903
Query: 70 PGTNGTKTDHYAMG 83
PG++G K D G
Sbjct: 1904 PGSSGPKGDRGETG 1917
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Query: 29 GRIGLDGRDGLPGEPGLDG---------IPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ GL+G++G PG+PG DG PGR G DG G+ G PG G+ G G
Sbjct: 1834 GKPGLNGKNGEPGDPGEDGRKGEKGDSGAPGREGRDGPKGERGAPGSPGLQGPPG 1888
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I G GLDG G PG PGL G G G G+PG+ G PGK+G+ G G +
Sbjct: 2632 IKGACGLDGEKGDKGEAGPPGRPGLAGRRGELGEPGVPGQAGAPGKEGLIGPKGDR 2687
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKD------GLPGKDGIPGTNGTKTDHYAMG 83
G GLPG+ G G PG G DG GKD G+PG G+PG G K + MG
Sbjct: 2236 QGAPGLPGQVGETGKPGAPGRDGATGKDGDRGAPGVPGSPGLPGPVGPKGEPGPMG 2291
>gi|3411216|gb|AAD12181.1| pro-alpha2(I) collagen [Coturnix coturnix]
Length = 215
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 29/50 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+SG G G G G PG +G PG G DG PG DG PG+DG PG G +
Sbjct: 7 VSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDGPPGRDGAPGFKGER 56
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 28 SGRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
SG +G G +G PGE PG DG PGR+G G G+ G PG G G G H
Sbjct: 17 SGPVGSPGPNGAPGEAGRDGNPGNDGPPGRDGAPGFKGERGAPGNQGPSGPLGAPGPHGQ 76
Query: 82 MGADTKSFSDG 92
+G K + G
Sbjct: 77 VGPSGKPGNRG 87
>gi|340376087|ref|XP_003386565.1| PREDICTED: collagen alpha-1(VII) chain-like [Amphimedon
queenslandica]
Length = 1258
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
R G+ S I G G G+ G+PG PG G+PG G G PGK+G PG G+PG
Sbjct: 843 RGPPGKMGSDGIPGARGPPGKSGIPGARGPPGKSGLPGVPGRSGPPGKNGEPGMKGMPGV 902
Query: 73 NGT 75
NGT
Sbjct: 903 NGT 905
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G DG PG PG G PG+ G DGIPG G PGK GIPG G
Sbjct: 826 GPPGKTGIDGEPGIPGSRGPPGKMGSDGIPGARGPPGKSGIPGARG 871
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPGTNGTKTDHYAMG 83
G G DG G PG PG G PG+ G +G+PG G PGK DG PG G++ MG
Sbjct: 791 TQGEPGDDGPKGDPGTPGARGPPGKMGTNGVPGARGPPGKTGIDGEPGIPGSRGPPGKMG 850
Query: 84 AD 85
+D
Sbjct: 851 SD 852
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDH 79
+G DG+ G+ G G+ G PG GM G PG D G PG G+PG NGTK +
Sbjct: 422 LGRDGKPGINGTDGMKGKPGEKGMKGEPGSDGRAGKPGPAGVPGFNGTKGEK 473
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 16 RRDIGRAISTVI--SGRIGLDGRDGLPGEPG---LDGIPGRNGMDGIPGKDGLPGKDGIP 70
R G+ I V +G G +G DG PG+PG L G PGR G+ G PG G PG DG+
Sbjct: 178 RGHPGKGIPGVPGRNGTDGTNGTDGTPGDPGSKGLPGPPGRKGLPGDPGMKGKPGDDGMK 237
Query: 71 GTNGTK 76
G G K
Sbjct: 238 GEPGRK 243
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGKDGIPGTNG 74
T I G G+ G G PG+ G DGIPG G GIPG G PGK G+PG G
Sbjct: 831 TGIDGEPGIPGSRGPPGKMGSDGIPGARGPPGKSGIPGARGPPGKSGLPGVPG 883
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 20 GRAISTVISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLP------GKDGIP 70
G+ + G G DGR G PG PG +G G GM G PG GL G+ G P
Sbjct: 438 GKPGEKGMKGEPGSDGRAGKPGPAGVPGFNGTKGEKGMSGQPGIPGLNGTAGARGERGPP 497
Query: 71 GTNGTKTDHYAMGADTKSFSDGV 93
G NGTK D G+ DG+
Sbjct: 498 GLNGTKGDKGDTGSPGNDGRDGI 520
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNG---MDGIPGKDGLPGKDGIP---GTNGT 75
I G G G+ GLPG PG G PG+NG M G+PG +G G+ G P G NGT
Sbjct: 866 IPGARGPPGKSGLPGVPGRSGPPGKNGEPGMKGMPGVNGTTGRKGSPGPPGMNGT 920
>gi|328723513|ref|XP_001947747.2| PREDICTED: collagen alpha-1(IV) chain-like [Acyrthosiphon pisum]
Length = 1778
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 39 LPGEPGLDGIPGRNGM---DGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGVL 94
L GEPG G PGR+G+ DG+ G +G PG DG+PG NG K D G+D G L
Sbjct: 649 LKGEPGPRGDPGRDGLRGADGLNGPEGKPGLDGLPGINGEKGDRGFPGSDGTPGQPGYL 707
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Query: 7 MLQVL--EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDG---IPGKD 61
+L+ L E R D GR G G DG +G G+PGLDG+PG NG G PG D
Sbjct: 645 LLETLKGEPGPRGDPGR------DGLRGADGLNGPEGKPGLDGLPGINGEKGDRGFPGSD 698
Query: 62 GLPGKDGIPGTNGTK 76
G PG+ G G+ G K
Sbjct: 699 GTPGQPGYLGSKGEK 713
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGI---PGRNGMDGIPGKDGLPGKDG 68
E D+ D+G + G G G G PG G+ G+ PG GM GIPGK G+PG G
Sbjct: 1391 EKGDKGDVGFSGEPGYPGSKGDKGERGYPGLEGMQGVQGLPGDRGMTGIPGKLGMPGISG 1450
Query: 69 IPGTNG 74
I G G
Sbjct: 1451 IKGDKG 1456
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 28/52 (53%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
GL+G G PG G G PG G G+ G+ GL G DGIPG HY+ G
Sbjct: 1504 GLNGPVGPPGSEGEKGEPGVEGPQGLQGQPGLRGNDGIPGKPCESEPHYSTG 1555
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
GRDGL G GL+G G+ G+DG+PG +G G G PG++GT +G+
Sbjct: 660 GRDGLRGADGLNGPEGKPGLDGLPGINGEKGDRGFPGSDGTPGQPGYLGS 709
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 13 VHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
V D+ D G + G G G+ G+PG PG+ G+PG+ G GIP G+PG DG GT
Sbjct: 107 VGDKGDTG---PIGVRGPKGDRGKTGIPGFPGVSGVPGQMGPQGIP---GIPGLDGCNGT 160
Query: 73 NGT 75
+G
Sbjct: 161 DGN 163
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 25 TVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNGTKTD 78
T G G G G+PG +PG+DG+PG G G +PG G PG+DG+PG G + +
Sbjct: 961 TGPEGPKGFSGFRGMPGAFGKPGIDGMPGEKGDKGDTGLPGISGPPGEDGLPGPQGYRGE 1020
Query: 79 HYAMG 83
+G
Sbjct: 1021 KGDIG 1025
>gi|301767380|ref|XP_002919113.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(VI) chain-like
[Ailuropoda melanoleuca]
Length = 1059
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 31/57 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G+ G+DG DG+ GE G G+PG G G G G PG G G G K + A GAD
Sbjct: 354 GKRGIDGVDGMKGEAGYPGLPGCKGSPGFDGTQGPPGPKGDAGAFGRKGEKGAPGAD 410
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 26/48 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G G GE G GI G +GM G G GLPG G PG +GT+
Sbjct: 339 GEKGSRGAKGYKGEKGKRGIDGVDGMKGEAGYPGLPGCKGSPGFDGTQ 386
>gi|426257737|ref|XP_004022479.1| PREDICTED: collagen alpha-6(IV) chain [Ovis aries]
Length = 1688
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G+ GL G G PG PGL G PG +G G+PG GLPGKDG+PG G+ +
Sbjct: 685 GQPGLRGNKGDPGSPGLVHLPELPGFPGPHGEKGLPGFPGLPGKDGLPGKVGSPGLPGSK 744
Query: 83 GA 84
GA
Sbjct: 745 GA 746
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 29/52 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G G G PG PGL GIPG +G+ GIPG G G G G+ G K D
Sbjct: 892 LKGEKGSAGLTGFPGIPGLPGIPGASGLKGIPGSTGRVGPSGWAGSPGEKGD 943
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
+G S + G G DG +GLPG PG G PG G+ G PG +G PGK G
Sbjct: 1400 VGLQGSKGLPGIPGKDGTNGLPGPPGALGDPGLPGLQGPPGFEGAPGKPG 1449
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGKDGLPGKDGIPG 71
D G S + G G+ G GLPG PG G PG G G PG GL G +G+PG
Sbjct: 1119 DAGLPGSLGLPGVAGMRGNPGLPGSPGHSGATGPLGPPGLIGTKGFPGLPGLHGLNGLPG 1178
Query: 72 TNGTK 76
T GT+
Sbjct: 1179 TKGTR 1183
>gi|341898484|gb|EGT54419.1| hypothetical protein CAEBREN_20784 [Caenorhabditis brenneri]
Length = 372
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 24/37 (64%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G PG PG DG G G DG PG G PG+DG PGT+G
Sbjct: 138 GEPGPPGEDGPAGERGADGEPGSPGKPGEDGEPGTDG 174
>gi|327267097|ref|XP_003218339.1| PREDICTED: collagen alpha-3(IV) chain-like [Anolis carolinensis]
Length = 1418
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR+G G +G+PGE PGL G PG+ G DG G G PG G+PG G
Sbjct: 545 GRLGSPGEEGMPGEKGERGFPGLQGPPGQQGQDGADGPRGEPGSPGVPGEKG 596
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G PG+ GL GIPG G DG PG G PG+ G+PG G + + MG
Sbjct: 642 GFPGQFGLPGIPGPQGNDGPPGNKGQPGRPGVPGIPGPRGEMGLMG 687
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGR--NGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G GLPGE GL G PG G+ G G G PG G+PGT+G K D
Sbjct: 388 GPQGSSGSPGLPGEVGLSGPPGYGPQGLKGSQGTQGDPGPSGLPGTSGPKGD 439
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDG--------IPGRNGMDGIPGKDGLPGKD 67
+ D G ST G G G GLPG PG+ G IPG G G PG++G+PG+
Sbjct: 500 KGDKGLQGSTGPPGCPGTLGEPGLPGRPGISGEKGEPGPFIPGAQGRLGSPGEEGMPGEK 559
Query: 68 ---GIPGTNGTKTDHYAMGAD 85
G PG G GAD
Sbjct: 560 GERGFPGLQGPPGQQGQDGAD 580
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 27/50 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG+PGL G PGR G G G G+PG G G NG K
Sbjct: 863 LPGERGQKGEKGSPGQPGLIGEPGRQGNRGDAGSPGIPGFPGPAGDNGRK 912
>gi|427785525|gb|JAA58214.1| Putative alpha-1 collagen type iii [Rhipicephalus pulchellus]
Length = 648
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G A S G+ G DGR GL GE G G G G GIPG DGLPG G PG G +
Sbjct: 538 GPAGSKGDPGKPGFDGRPGLTGERGEPGRKGDKGEPGIPGLDGLPGHQGEPGIPGLRGKP 597
Query: 80 YAMG--ADTKSFSDGVLP 95
G D+ +D LP
Sbjct: 598 GRKGDKGDSAWSADPCLP 615
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 31/56 (55%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G +GL G G+PG PG G G NG DG G+ G PG G PG +G K D G+
Sbjct: 249 GFVGLPGDPGIPGLPGPKGNTGTNGRDGPRGEKGDPGAPGTPGVDGEKGDKGEPGS 304
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 32/66 (48%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GR T G G G G PG PGLDG+PG G GIPG G PG+ G G + D
Sbjct: 553 GRPGLTGERGEPGRKGDKGEPGIPGLDGLPGHQGEPGIPGLRGKPGRKGDKGDSAWSADP 612
Query: 80 YAMGAD 85
G +
Sbjct: 613 CLPGPN 618
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 32/57 (56%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G A S+ G G G G PG+PG DG PG G G PG+ G G+ GIPG +G
Sbjct: 524 EKGEAGSSGPLGLPGPAGSKGDPGKPGFDGRPGLTGERGEPGRKGDKGEPGIPGLDG 580
>gi|47218941|emb|CAF98139.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1557
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G +GL G G G+ G+ G+PG +G G PG++G PG+ G+PG G +
Sbjct: 574 QGLVGLPGEKGPQGKKGMQGLPGNDGPPGHPGREGAPGEKGLPGPQGVQ 622
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 31/59 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
+ G G G+ G+ G PG DG PG G +G PG+ GLPG G+ G G GAD
Sbjct: 579 LPGEKGPQGKKGMQGLPGNDGPPGHPGREGAPGEKGLPGPQGVQGPVGYPGQRGVKGAD 637
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMD---------GIPGKDGLPGKDGIPGTNGTKTDH 79
G GL G DG PG PG +G PG G+ G PG+ G+ G DGI G G+K +
Sbjct: 590 GMQGLPGNDGPPGHPGREGAPGEKGLPGPQGVQGPVGYPGQRGVKGADGIRGLKGSKGEK 649
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 4 VQGMLQVLEVHDRRDIGRAISTV--ISGRIGLDGRDG------LPGEPGLDGIPGRNGMD 55
+ GML V V + G +STV G +G G+ G PG GL G+PG G
Sbjct: 529 LTGMLGVDGVQGSK--GNIVSTVEGPPGEVGSPGQQGNPGIMGFPGPQGLVGLPGEKGPQ 586
Query: 56 GIPGKDGLPGKDGIPGTNG 74
G G GLPG DG PG G
Sbjct: 587 GKKGMQGLPGNDGPPGHPG 605
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 29/59 (49%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
++G G +G G GL G PG G G+ GM G+PG DG PG G G G K
Sbjct: 555 EVGSPGQQGNPGIMGFPGPQGLVGLPGEKGPQGKKGMQGLPGNDGPPGHPGREGAPGEK 613
>gi|348581440|ref|XP_003476485.1| PREDICTED: collagen alpha-1(VII) chain-like [Cavia porcellus]
Length = 2988
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GLDG G LPG PGL G G G G+PG+ G PGK+G+ G G +
Sbjct: 2625 VKGACGLDGEKGDKGEAGLPGRPGLAGRKGETGDPGVPGQSGAPGKEGLIGPKGDR 2680
>gi|395857392|ref|XP_003801078.1| PREDICTED: collagen alpha-1(III) chain [Otolemur garnettii]
Length = 1464
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 27/45 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
I G G DG+DG PGEPG +G+PG G G PG G G G PG
Sbjct: 456 IPGAKGEDGKDGSPGEPGANGLPGAAGERGPPGFRGPAGPSGAPG 500
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR + G G G G+PG PG+ G GRNG G PG GL G++G+PG NG
Sbjct: 236 GRTGERGLPGPAGAKGPAGMPGFPGMKGHRGFDGRNGEKGEPGAPGLKGENGLPGDNGA 294
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 15/71 (21%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP------------GKDGIPGTNG 74
+ G G DGR+G GEPG G+ G N G+PG +G P G+ G+PG G
Sbjct: 261 MKGHRGFDGRNGEKGEPGAPGLKGEN---GLPGDNGAPGPMGPRGAPGERGRPGLPGAAG 317
Query: 75 TKTDHYAMGAD 85
++ + A G+D
Sbjct: 318 SRGNDGARGSD 328
>gi|390177236|ref|XP_003736309.1| GA30098, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388858958|gb|EIM52382.1| GA30098, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 836
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNGTKTDHYAMG 83
SG G G+ G+PG PGLDG+ G G G G+ GLPG DGIPG G + + + G
Sbjct: 674 SGPSGPAGKAGIPGPPGLDGMKGAQGETGHKGERGDPGLPGTDGIPGQEGPRGEQGSRG 732
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GR G DG G GEPG G G G+DG+PG+ G+ G G+PG G
Sbjct: 509 GRDGRDGSKGDAGEPGEPGSLGPRGLDGLPGEPGIEGPPGLPGYQG 554
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG 62
G +G G DGLPGEPG++G PG G G PG+ G
Sbjct: 527 GSLGPRGLDGLPGEPGIEGPPGLPGYQGPPGEKG 560
>gi|326922313|ref|XP_003207394.1| PREDICTED: collagen alpha-1(XVIII) chain-like [Meleagris gallopavo]
Length = 1531
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDG---------IPGRNGMDGIPGKDGLPG 65
D G ++T G G G G+PG PG+ G +PG G G+PG DG PG
Sbjct: 806 DMEGSGLPLATGSPGPRGPSGPQGVPGLPGIKGEVGSLGQPGLPGPKGDAGVPGVDGRPG 865
Query: 66 KDGIPGTNGTKTDHYAMGADTKSFSDGV 93
+G PG G K + + G + DGV
Sbjct: 866 LEGFPGPQGPKGNRGSPGEKGERGQDGV 893
>gi|22652113|gb|AAN03620.1|AF406780_1 alpha 1 type XXII collagen [Homo sapiens]
Length = 1626
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDHYAMG 83
G DGLPG+PGL G G G+ G PG+ GLPG G PG G K D G
Sbjct: 774 GEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKG 825
>gi|91795030|ref|YP_564681.1| triple helix repeat-containing collagen [Shewanella denitrificans
OS217]
gi|91717032|gb|ABE56958.1| Collagen triple helix repeat [Shewanella denitrificans OS217]
Length = 493
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 32/55 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G +GL G G+ G PG+DG GR+G DG G GL G DG+ G G + D MG
Sbjct: 295 GDLGLKGLTGIAGNPGVDGRNGRDGKDGNAGLMGLQGPDGLQGPKGVRGDTGPMG 349
>gi|297463635|ref|XP_002702824.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(VII) chain [Bos
taurus]
Length = 2933
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GLDGR GL G+PG G PG NG GK G PG+DG+PG G +
Sbjct: 1765 GPPGLDGRSGLDGKPGASGPPGPNGAM---GKAGDPGRDGLPGLRGEQ 1809
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK--DGI 69
E D + GR SG G +GRDG GE G G PG G G+PG+ G PG+ G+
Sbjct: 1838 EPGDPGEDGRKGEKGDSGAPGREGRDGPKGERGAPGSPGLQGPPGLPGQVGPPGQGFPGV 1897
Query: 70 PGTNGTKTDHYAMG 83
PG++G K D G
Sbjct: 1898 PGSSGPKGDRGETG 1911
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 33/68 (48%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
R D G G G G GL G GL G G G GIPG+ G PGKDG+PG G
Sbjct: 2543 RGDSGEPGEKGTKGEPGDKGSAGLLGARGLMGPKGEPGAAGIPGEPGSPGKDGVPGVRGD 2602
Query: 76 KTDHYAMG 83
K D MG
Sbjct: 2603 KGDVGFMG 2610
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Query: 29 GRIGLDGRDGLPGEPGLD---------GIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ GL+G++G PG+PG D G PGR G DG G+ G PG G+ G G
Sbjct: 1828 GKPGLNGKNGEPGDPGEDGRKGEKGDSGAPGREGRDGPKGERGAPGSPGLQGPPG 1882
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I G GLDG G PG PGL G G G G+PG+ G PGK+G+ G G +
Sbjct: 2620 IKGACGLDGEKGDKGEAGPPGRPGLAGRRGELGEPGVPGQAGAPGKEGLIGPKGDR 2675
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
D DG PG PG GIPG G+ G+PG G G G+ G G K + + G
Sbjct: 1445 DCEDGAPGLPGQPGIPGERGLRGLPGDAGPKGDRGLTGAAGEKGERGSPG 1494
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKD------GLPGKDGIPGTNGTKTDHYAMG 83
G GLPG+ G G PG G DG GKD G+PG G+PG G K + MG
Sbjct: 2230 QGAPGLPGQVGETGKPGAPGRDGATGKDGDRGAPGVPGSPGLPGPVGPKGEPGPMG 2285
>gi|339247897|ref|XP_003375582.1| collagen alpha-2(IV) chain [Trichinella spiralis]
gi|316971040|gb|EFV54881.1| collagen alpha-2(IV) chain [Trichinella spiralis]
Length = 1810
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 33/59 (55%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ + G A + G G G DGLPG PG DG PG G G PG+ GL G DGIPG G
Sbjct: 911 KGNAGSAGQPGLMGLKGAQGLDGLPGLPGSDGRPGIVGSPGEPGRPGLRGNDGIPGAPG 969
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 36/69 (52%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ D G AI T +GR G G G+PG PG G G G DG PG G PG G G G
Sbjct: 651 DKGDAGDAIGTPNAGRPGAKGEPGIPGFPGQRGPMGDAGRDGSPGLPGAPGLPGERGLPG 710
Query: 75 TKTDHYAMG 83
++ + MG
Sbjct: 711 SRAKNGRMG 719
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 15 DRRDIGRAISTVISGRIGLDGRD--GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIP 70
+R D G A +G IG G G+PG G G+ G NG+ G PG GLPGKDGIP
Sbjct: 798 ERGDPGYAGQPGPAGMIGETGPSIPGIPGPKGYPGMKGSNGLPGFPGIPGLPGKDGIP 855
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDG-----IPGKDGLPGKDGIPGTNGTKTD 78
GL G G PG PGL G PG G G PG+DG PG DGIPG G + D
Sbjct: 479 GLRGEPGYPGMPGLQGPPGEIGFPGSTIYGPPGRDGYPGLDGIPGPPGERGD 530
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 29 GRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR G+ G G PG PGL DGIPG G G G G+PG G+PG GT
Sbjct: 942 GRPGIVGSPGEPGRPGLRGNDGIPGAPGKSGPIGSAGVPGAAGLPGMAGT 991
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTKTD 78
++G GL+G GLPG PG+ G G +G+ G+PG GL G+ G+PG G K D
Sbjct: 1214 LAGNNGLEGMPGLPGMPGVKGEAGLSGIPGLPGVGGLKGNKGESGLPGYPGPKGD 1268
Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 27 ISGRIGLDG-----RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G GLDG DGLPG+ G G+ G NG++G+PG G+PG G G +G
Sbjct: 1188 IPGVRGLDGAKVWGEDGLPGQKGYPGLAGNNGLEGMPGLPGMPGVKGEAGLSG 1240
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
S GR GL G DG+PG PG G G G+PG GLPG G PG G + G
Sbjct: 949 SPGEPGRPGLRGNDGIPGAPGKSGP---IGSAGVPGAAGLPGMAGTPGLKGESGEPGFPG 1005
Query: 84 AD 85
A
Sbjct: 1006 AQ 1007
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP-----------GKDGLPGKDGIPGTNGT 75
I G G G G+PG+PG+ G G G GIP G+DGLPG+ G PG G
Sbjct: 1158 IPGNAGTPGLPGMPGQPGIPGSKGERGNAGIPGVRGLDGAKVWGEDGLPGQKGYPGLAGN 1217
Query: 76 K 76
Sbjct: 1218 N 1218
>gi|40805823|ref|NP_690848.1| collagen alpha-1(XXII) chain precursor [Homo sapiens]
gi|296434458|sp|Q8NFW1.2|COMA1_HUMAN RecName: Full=Collagen alpha-1(XXII) chain; Flags: Precursor
gi|225000822|gb|AAI72420.1| Collagen, type XXII, alpha 1 [synthetic construct]
Length = 1626
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDHYAMG 83
G DGLPG+PGL G G G+ G PG+ GLPG G PG G K D G
Sbjct: 774 GEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKG 825
>gi|444730221|gb|ELW70611.1| Collagen alpha-1(XXVII) chain, partial [Tupaia chinensis]
Length = 1922
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 32/72 (44%)
Query: 5 QGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP 64
G L + R G V+ G G G G PGE G G G G G PG+ GLP
Sbjct: 849 HGAYTRLGMSARLSCGLTCQKVVVGYKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLP 908
Query: 65 GKDGIPGTNGTK 76
G G PG G++
Sbjct: 909 GPVGDPGPKGSR 920
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GR G+ G GLPG G+ GR G++G G DG PG+DG G G + D
Sbjct: 1553 GRRGIQGLQGLPGP---RGVVGRQGLEGAAGPDGFPGRDGQAGPQGEQGD 1599
>gi|297488708|ref|XP_002697097.1| PREDICTED: collagen alpha-1(VII) chain [Bos taurus]
gi|296474920|tpg|DAA17035.1| TPA: collagen, type VII, alpha 1 [Bos taurus]
Length = 2932
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GLDGR GL G+PG G PG NG GK G PG+DG+PG G +
Sbjct: 1765 GPPGLDGRSGLDGKPGASGPPGPNGAM---GKAGDPGRDGLPGLRGEQ 1809
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK--DGI 69
E D + GR SG G +GRDG GE G G PG G G+PG+ G PG+ G+
Sbjct: 1838 EPGDPGEDGRKGEKGDSGAPGREGRDGPKGERGAPGSPGLQGPPGLPGQVGPPGQGFPGV 1897
Query: 70 PGTNGTKTDHYAMG 83
PG++G K D G
Sbjct: 1898 PGSSGPKGDRGETG 1911
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 33/68 (48%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
R D G G G G GL G GL G G G GIPG+ G PGKDG+PG G
Sbjct: 2542 RGDSGEPGEKGTKGEPGDKGSAGLLGARGLMGPKGEPGAAGIPGEPGSPGKDGVPGVRGD 2601
Query: 76 KTDHYAMG 83
K D MG
Sbjct: 2602 KGDVGFMG 2609
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Query: 29 GRIGLDGRDGLPGEPGLDG---------IPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ GL+G++G PG+PG DG PGR G DG G+ G PG G+ G G
Sbjct: 1828 GKPGLNGKNGEPGDPGEDGRKGEKGDSGAPGREGRDGPKGERGAPGSPGLQGPPG 1882
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I G GLDG G PG PGL G G G G+PG+ G PGK+G+ G G +
Sbjct: 2619 IKGACGLDGEKGDKGEAGPPGRPGLAGRRGELGEPGVPGQAGAPGKEGLIGPKGDR 2674
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
D DG PG PG GIPG G+ G+PG G G G+ G G K + + G
Sbjct: 1445 DCEDGAPGLPGQPGIPGERGLRGLPGDAGPKGDRGLTGAAGEKGERGSPG 1494
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKD------GLPGKDGIPGTNGTKTDHYAMG 83
G GLPG+ G G PG G DG GKD G+PG G+PG G K + MG
Sbjct: 2230 QGAPGLPGQVGETGKPGAPGRDGATGKDGDRGAPGVPGSPGLPGPVGPKGEPGPMG 2285
>gi|299782471|ref|NP_001177687.1| collagen, type V, alpha 3b precursor [Danio rerio]
gi|295815595|gb|ADG36305.1| collagen type V alpha-3b [Danio rerio]
Length = 1723
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
+ G G G+ G+ G PG+DG PG G +G PG+ GLPG G+ G G GAD
Sbjct: 617 VPGEKGPQGKKGMKGLPGVDGPPGHPGREGPPGEKGLPGAAGVQGPVGYPGARGVKGAD 675
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G +G+ G G G+ G+ G+PG +G G PG++G PG+ G+PG G +
Sbjct: 612 QGPVGVPGEKGPQGKKGMKGLPGVDGPPGHPGREGPPGEKGLPGAAGVQ 660
>gi|119612600|gb|EAW92194.1| collagen, type XXII, alpha 1, isoform CRA_b [Homo sapiens]
Length = 1626
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDHYAMG 83
G DGLPG+PGL G G G+ G PG+ GLPG G PG G K D G
Sbjct: 774 GEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKG 825
>gi|240849597|ref|NP_001155862.1| collagen, type IV, alpha 2 precursor [Gallus gallus]
Length = 1715
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIP------GRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
+ G G+ G+DGLPG PG+ I G G+DG+PG GL G+ GIP G+K +
Sbjct: 1259 VQGPFGIPGQDGLPGPPGISNISGYPGDTGSPGLDGVPGYPGLHGQPGIPAPPGSKGESG 1318
Query: 81 AMGADTKSFSDGV 93
G ++ G
Sbjct: 1319 RAGVSGQAGPKGT 1331
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI---PGKDGLPGKDGIPGT------NGTKT 77
++G G DG G PG+PG G PG +G +G PG G PG G PGT G K
Sbjct: 112 VTGFPGADGVPGHPGQPGSRGKPGHDGCNGTVGDPGDPGTPGHSGFPGTIGVQGPKGQKG 171
Query: 78 DHYAMGADTKS 88
+ Y + D S
Sbjct: 172 EPYVLPPDIAS 182
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 33/69 (47%), Gaps = 15/69 (21%)
Query: 22 AISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI---------------PGKDGLPGK 66
A V+ G G DGLPG PGL G PG G+ GI PG GLPG
Sbjct: 775 APGDVLGAAAGPRGDDGLPGFPGLKGAPGDQGIPGIRGADGNPGLPGPKGDPGLQGLPGL 834
Query: 67 DGIPGTNGT 75
G+PGT GT
Sbjct: 835 MGLPGTPGT 843
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
++G G PG+ G G+PG G GIPG+DGLPG GI +G D + G D
Sbjct: 1241 VEGSQGPPGQKGDRGVPGVQGPFGIPGQDGLPGPPGISNISGYPGDTGSPGLD 1293
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLP------GKDGIPGTNGTKT 77
I G G DG GLPG +PGL G+PG G+ G PG G P G DG PG+ G
Sbjct: 807 IPGIRGADGNPGLPGPKGDPGLQGLPGLMGLPGTPGTHGFPGPPGNRGPDGGPGSQGPLG 866
Query: 78 DHYAMGAD 85
A G D
Sbjct: 867 PPGARGED 874
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
R G + + G G G G PG+PG G PG NG G PG++G PG G G G
Sbjct: 686 RPPKGSQGNPGLPGATGTKGARGFPGDPGPVGFPGLNGTRGDPGREGYPGPPGFIGPRGD 745
Query: 76 K 76
+
Sbjct: 746 R 746
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 28/51 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G+ GL G G PG+ G G PG G G PG GLPG+ G+PG G H
Sbjct: 1153 GQKGLPGLVGPPGQQGSPGTPGFQGEKGAPGWPGLPGQAGLPGLRGISGLH 1203
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN---GTKTDHYAMG 83
++G G+ G DG PG+ G G PG +G G+PG G PG GI G GT+ D A G
Sbjct: 906 VTGPPGISGMDGFPGDKGSRGSPGIDGFKGMPGLKGRPGIKGIKGEFGLLGTRGDKGAQG 965
Query: 84 A 84
A
Sbjct: 966 A 966
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 39/93 (41%), Gaps = 21/93 (22%)
Query: 10 VLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGR------------------ 51
++EV + G A T G G+ G G+PG PG GIPG
Sbjct: 990 MMEVKGEK--GDAGETGTKGFFGIKGSKGMPGLPGKTGIPGSPGHPSYVPGVKGDIGAKG 1047
Query: 52 -NGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G+ G PG G PG G PG+ G + D A G
Sbjct: 1048 LTGLKGYPGPTGSPGIRGFPGSTGGRGDKGAPG 1080
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G G PG PGL G G G+ GI G GLPG G+PG+ G
Sbjct: 1171 GTPGFQGEKGAPGWPGLPGQAGLPGLRGISGLHGLPGTKGLPGSPG 1216
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G +G G+ G PG PG G G G G+PG+ GLPG GI G +G
Sbjct: 1157 LPGLVGPPGQQGSPGTPGFQGEKGAPGWPGLPGQAGLPGLRGISGLHG 1204
>gi|392346093|ref|XP_575056.3| PREDICTED: collagen alpha-1(XXIV) chain-like [Rattus norvegicus]
Length = 1316
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 30/47 (63%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
SG+ G+ G GLPG GL G G +G+ G PGK GL GK G+PG G
Sbjct: 913 SGKPGIPGLPGLPGPKGLQGYHGVDGLSGYPGKPGLLGKQGLPGEQG 959
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDG 68
E + D+G S +G G G G PGE GL DG+ G G G+PG+DG G+ G
Sbjct: 662 EPGAKGDVGPTGSEGATGEPGPRGEPGAPGEEGLQGKDGLKGAPGGSGLPGEDGEKGEMG 721
Query: 69 IPGTNG 74
+PGT G
Sbjct: 722 LPGTAG 727
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGIPGTNGTKTD 78
G +G G +G GEPG G PG G +G+ GKDGL PG G+PG +G K +
Sbjct: 667 GDVGPTGSEGATGEPGPRGEPGAPGEEGLQGKDGLKGAPGGSGLPGEDGEKGE 719
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G+DG G PG+PGL G G G G+PG+ G+PG+ G GT G
Sbjct: 930 LQGYHGVDGLSGYPGKPGLLGKQGLPGEQGLPGQPGIPGQRGQRGTQG 977
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G+ GL G GLPG+PG+ G G+ G G G+ G PG G PG +G +
Sbjct: 950 GKQGLPGEQGLPGQPGIPGQRGQRGTQGDQGRRGEPGLKGQPGEHGNQ 997
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 9/60 (15%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNG---------MDGIPGKDGLPGKDGIPGTNGTKTD 78
+G+ G G G+ G+PGL G+PG +G G+PG GLPG+ G+ G GT+ D
Sbjct: 597 AGKTGSPGERGVQGKPGLQGLPGSSGDMGPAGEPGPRGLPGDAGLPGEMGVEGPPGTEGD 656
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GL G GLPG E G+ G+ G G G PG+ GL G +G PG+ G +
Sbjct: 203 LQGEKGLKGHTGLPGLRGEQGIPGLAGNVGSPGYPGRQGLAGPEGNPGSKGVR 255
>gi|402579784|gb|EJW73735.1| collagen alpha-5(IV) chain, partial [Wuchereria bancrofti]
Length = 354
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 32/52 (61%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G GL G G+ GE G+ G+PG G+ G PG G PGKDGIPG G K +
Sbjct: 85 AGLPGLPGAPGVKGERGIAGLPGLPGLKGAPGYPGAPGKDGIPGIPGEKGER 136
>gi|351698160|gb|EHB01079.1| Collagen alpha-1(VII) chain, partial [Heterocephalus glaber]
Length = 2833
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GLDG G LPG PGL G G G G+PG+ G+PGK+G+ G G +
Sbjct: 2522 VKGACGLDGEKGDKGEAGLPGRPGLAGRKGEIGEPGMPGQSGIPGKEGLIGPKGDR 2577
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK--DGIPGT 72
D + GR SG G +G DG GE G G PG G G+PG+ G PG+ G+PG+
Sbjct: 1757 DPGEAGRKGEKGESGAPGREGHDGPKGERGAPGSPGLQGPPGLPGQVGPPGQGFPGVPGS 1816
Query: 73 NGTKTDHYAMGA 84
G K D G+
Sbjct: 1817 MGPKGDRGETGS 1828
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G GLDGR GL G+PG PG G G GK G PG+DG+PG
Sbjct: 1681 GPPGLDGRSGLDGKPG---APGPAGQPGAVGKAGEPGRDGLPG 1720
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G G +GLPG+PGL G G G G+PG G G+ G PG G
Sbjct: 1542 GEVGEKGDEGLPGDPGLPGKVGERGPRGVPGSRGPVGEKGDPGDPG 1587
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 40/96 (41%), Gaps = 30/96 (31%)
Query: 27 ISGRIGLDGRDGLPG------------EPGLDGIP------------------GRNGMDG 56
+ GR GLDG+ G PG EPG DG+P G+ G DG
Sbjct: 1685 LDGRSGLDGKPGAPGPAGQPGAVGKAGEPGRDGLPGLRGEHGPPGPSGPPGALGKPGEDG 1744
Query: 57 IPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDG 92
PG +G G+ G PG G K + GA + DG
Sbjct: 1745 TPGLNGKNGQPGDPGEAGRKGEKGESGAPGREGHDG 1780
>gi|335291072|ref|XP_003356382.1| PREDICTED: collagen alpha-2(IX) chain-like [Sus scrofa]
Length = 688
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 30/53 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G G+DG+DG PG PG+ G G+ G G PG GL G G PGT G D
Sbjct: 298 ATGPPGIDGKDGTPGTPGMKGSAGQAGRPGNPGHQGLAGMPGQPGTKGGPGDK 350
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G GR G PG GL G+PG+ G G PG G PG+ G PG +G G
Sbjct: 316 MKGSAGQAGRPGNPGHQGLAGMPGQPGTKGGPGDKGEPGQRGFPGVSGPPGKEGEPGPQG 375
Query: 87 KSFSDGVL 94
+ G++
Sbjct: 376 EIGPQGIM 383
>gi|449283621|gb|EMC90226.1| Collagen alpha-1(XXI) chain [Columba livia]
Length = 911
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 26/45 (57%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G+DGLPG PG G G+ G G+ G G PG GIPG G K
Sbjct: 533 GRSGKDGLPGSPGFKGEVGQPGPPGLEGHRGEPGIPGIPGNQGAK 577
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
GL G DG+PG G+ G PG G G+PGK+G G GI
Sbjct: 800 GLPGNDGVPGLTGIPGRPGARGTRGLPGKNGAKGNQGI 837
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 38 GLPGEPGLDGIPGRNGMDGI---PGKDGLPGKDGIPGTNG 74
G PG+PG DG PG G+ GI PGKDG G G+PG G
Sbjct: 464 GYPGQPGPDGKPGPRGLPGIKGEPGKDGAKGDRGLPGFPG 503
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
PG PG DG+PG + GIPG+ G G G+PG NG K +
Sbjct: 798 FPGLPGNDGVPG---LTGIPGRPGARGTRGLPGKNGAKGNQ 835
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD------GI 69
+ + GR+ + G G G G PG PGL+G G G+ GIPG G G+ G
Sbjct: 529 KANPGRSGKDGLPGSPGFKGEVGQPGPPGLEGHRGEPGIPGIPGNQGAKGQKGEIGPPGQ 588
Query: 70 PGTNGTKTDHYAMGAD 85
PG G+ D MG +
Sbjct: 589 PGAKGSTGDTGLMGPE 604
>gi|76156746|gb|AAX27888.2| SJCHGC09574 protein [Schistosoma japonicum]
Length = 200
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G G G+ G+PGEPGLDG PG+ G+ G G+DGL G+PG G K +
Sbjct: 115 QGPKGFRGQPGIPGEPGLDGSPGQKGLPGAQGRDGL---VGVPGQKGEKGER 163
>gi|17506917|ref|NP_491595.1| Protein DPY-5 [Caenorhabditis elegans]
gi|2829747|sp|P91285.1|DPY5_CAEEL RecName: Full=Cuticle collagen dpy-5; AltName: Full=Protein dumpy-5
gi|373219170|emb|CCD66289.1| Protein DPY-5 [Caenorhabditis elegans]
Length = 284
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 36/77 (46%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
I G G+DGLPG+ G G+PG G G PGKDG PG+ G G GT G
Sbjct: 137 CIKCPAGPPGQDGLPGQEGFQGLPGDAGKRGTPGKDGEPGRVGDIGDQGTPGQDGQPGLA 196
Query: 86 TKSFSDGVLPSVQRAIA 102
DG+ Q +A
Sbjct: 197 GPPGRDGLTGKGQPGVA 213
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 29 GRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD---HYAM 82
G+ G+ GR G+PG EPG +G PG G G G G PGKDG G +GT A+
Sbjct: 208 GQPGVAGRPGMPGPRGEPGNNGNPGEEGQTGAQGPTGQPGKDGFNGNDGTPGQAGPQGAV 267
Query: 83 GADTK 87
GAD +
Sbjct: 268 GADAE 272
>gi|195342632|ref|XP_002037904.1| GM18517 [Drosophila sechellia]
gi|194132754|gb|EDW54322.1| GM18517 [Drosophila sechellia]
Length = 1776
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---------GLPGK---DGIPGTNG 74
I G GLDG G PG PGL G+PG G G PG D G PGK GIPG +G
Sbjct: 926 IDGVRGLDGAKGEPGSPGLVGMPGNKGDRGAPGNDGPKGFAGVTGAPGKRGPAGIPGVSG 985
Query: 75 TKTDHYAMG 83
K D A G
Sbjct: 986 AKGDKGATG 994
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 11 LEVHDRRDIGRAISTVISGRIGLDGRDGL---PGEPGLDGI---PGRNGMDGIPGKDGLP 64
L VH R G GR G+DGRDG+ GE GL G+ PG G G PG G P
Sbjct: 1091 LAVHGR--PGPQGEKGDQGRSGIDGRDGINGDKGEQGLQGVWGQPGEKGSVGAPGIPGTP 1148
Query: 65 GKDGIPGTNGT 75
G DG+PG GT
Sbjct: 1149 GMDGLPGAAGT 1159
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 29 GRIGLDGRDGLPGEPGLDGIP------GRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G IG G GLPGEPGL G+P G G G+ G G PG+DG PG G K D
Sbjct: 1315 GTIGERGLPGLPGEPGLVGLPGLIGPAGSKGERGLAGSPGQPGQDGFPGGPGLKGDTGPQ 1374
Query: 83 G 83
G
Sbjct: 1375 G 1375
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG--LPGKDGIPGTN 73
R G++ S G G G GL G PG DG PGR G DG PG G + G+ G G +
Sbjct: 667 RGSDGQSGSPGPKGEFGFKGDKGLSGAPGNDGTPGRAGRDGYPGIPGQSIKGEPGFHGRD 726
Query: 74 GTKTDHYAMG 83
G K D ++G
Sbjct: 727 GAKGDKGSLG 736
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 27/48 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G GL G DGLPG G +G G G+ G PG +G PGK G GT G
Sbjct: 410 TPGPQGLSGADGLPGSQGYNGQKGGAGLPGRPGNEGPPGKKGDKGTAG 457
>gi|301606908|ref|XP_002933063.1| PREDICTED: collagen alpha-2(IV) chain-like [Xenopus (Silurana)
tropicalis]
Length = 1683
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK--------DGLPGKDGI 69
+ G + G G G G PG PG DG PGRNG DG PG GLPG G
Sbjct: 561 EKGDKVFATEKGSKGAQGDSGFPGVPGRDGYPGRNGRDGSPGFPGPSGDGIKGLPGSHGF 620
Query: 70 PGTNGT 75
PG G
Sbjct: 621 PGLPGN 626
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 26/48 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G G+PGE G G PG G G PG G+ G DG+PGT G
Sbjct: 1170 FPGSQGFPGLPGVPGEKGSSGFPGLPGQHGFPGIRGIAGLDGLPGTKG 1217
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G +G+ G PG G PG +G G G+ G PG +G+PG GTK
Sbjct: 305 TGEKGEEGITGFPGQRGFPGNDGNSGASGEIGFPGANGVPGLPGTK 350
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 21 RAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
R I VI G G G G PG+ GL G PG G G+PG G G G PG G
Sbjct: 1144 RGIEGVI-GEHGQTGEKGFPGQQGLVGFPGSQGFPGLPGVPGEKGSSGFPGLPG 1196
>gi|47217758|emb|CAG05980.1| unnamed protein product [Tetraodon nigroviridis]
Length = 825
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 32 GLDGRDGLPGEPGLD------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G+ G DG GEPG D G+PG+ G G PG+DG PG G G G K D A G
Sbjct: 501 GIPGADGAKGEPGADGPTGPVGLPGKAGEPGKPGEDGKPGDKGATGERGDKGDTGAKG 558
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G +G G DGL G PG DG G G DG G GLPGK G PG G
Sbjct: 489 GDVGEPGADGLHGIPGADGAKGEPGADGPTGPVGLPGKAGEPGKPG 534
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+G +GL G+ G PG+PG DG PG G G G G G G+ G G K D +
Sbjct: 518 TGPVGLPGKAGEPGKPGEDGKPGDKGATGERGDKGDTGAKGMKGHTGLKGDQVS 571
>gi|312377591|gb|EFR24391.1| hypothetical protein AND_11046 [Anopheles darlingi]
Length = 1923
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGK-----DGLPGKDGIPGTNGTKTD--HYAMGA 84
GL G G PGEPG DG PG +G DG+PG+ G PG G G +G K D + +
Sbjct: 561 GLKGDKGRPGEPGFDGAPGASGKDGLPGRHGQTIKGEPGLKGNVGYSGQKGDKGYTGLKG 620
Query: 85 DTKSFSDGVLPSVQRAI 101
+ +D + P+++ AI
Sbjct: 621 EPGKCAD-IPPNLEAAI 636
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 13 VHDRRDIGRAISTVISGRIGL---DGRDGLPGEPGL----DGIPGRNGMDGIPGKDGLPG 65
+ DR D G + G +GL G G+PGEPGL D I G G G PG G PG
Sbjct: 1061 IGDRGDRGEKGDQGLIGPVGLMGLKGDRGIPGEPGLPATVDAIKGDKGEPGFPGPIGRPG 1120
Query: 66 KDGIPGTNGT 75
K G+PG G
Sbjct: 1121 KVGLPGAPGE 1130
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 15 DRRDIGRAISTVISGRIG---LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
DR D G S G G L G G PGE G G PG G G PG G+PG DG+ G
Sbjct: 755 DRGDAGLPGSVGYPGEKGDQGLSGPPGYPGEVGPKGEPGPKGPAGHPGAPGIPGLDGVKG 814
Query: 72 TNGTKTD 78
G + D
Sbjct: 815 MPGLRGD 821
>gi|449498949|ref|XP_002192821.2| PREDICTED: uncharacterized protein LOC100226545 [Taeniopygia
guttata]
Length = 1691
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
G+ G G+DG PG+PG DG+PG G++G PG+DG G+ G
Sbjct: 301 GKRGKPGKDGEPGQPGRDGLPGGPGINGAPGRDGEKGEKG 340
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 26/50 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G+ G PGL G PG G G PG G PG GIPG G +
Sbjct: 1093 LPGYPGSPGSKGIAGNPGLPGFPGSPGAKGEPGLPGFPGTPGIPGPKGIE 1142
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI---PGTNGTKTDHYAM 82
+ G G GEPG G PG++G G PG+DGLPG GI PG +G K + M
Sbjct: 290 VKGEKGEQGEPGKRGKPGKDGEPGQPGRDGLPGGPGINGAPGRDGEKGEKGDM 342
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 24/44 (54%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+GL G G PG G+ G PG G G PG G PG G PGT G
Sbjct: 1091 LGLPGYPGSPGSKGIAGNPGLPGFPGSPGAKGEPGLPGFPGTPG 1134
>gi|417407089|gb|JAA50171.1| Putative collagen alpha-1vii chain [Desmodus rotundus]
Length = 2928
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG------LPGKDGIPGTNGTKTDHYA 81
SG +G G GLPG+ G G PG G DG GKDG +PG G+PG G K +
Sbjct: 2230 SGLVGPQGAPGLPGQVGETGKPGAPGRDGTNGKDGDRGAPGVPGSPGLPGPVGPKGEPGP 2289
Query: 82 MGA 84
MGA
Sbjct: 2290 MGA 2292
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GLDG G PG PGL G G G G+PG+ G PGK+G+ G G +
Sbjct: 2625 VKGACGLDGEKGDKGEAGPPGRPGLAGRKGDAGEPGMPGQAGAPGKEGLIGPKGDR 2680
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIP---GTNGTKTDHYAMGAD 85
G G PG PGL G PG+ G+ G+PG G G+ G P G G K +H G D
Sbjct: 2020 GERGSPGLPGLAGEPGKPGIPGLPGSAGAVGEAGRPGERGERGEKGEHGEQGRD 2073
>gi|345306744|ref|XP_001509174.2| PREDICTED: hypothetical protein LOC100078067 [Ornithorhynchus
anatinus]
Length = 1633
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK 66
+ G G G+ GLPG PG G+PG G+DG+PG GLPG+
Sbjct: 1056 LPGSPGPKGQTGLPGFPGSRGLPGSKGLDGLPGSPGLPGE 1095
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 26/48 (54%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G G PG PG G PG G G PG GLPG+DG GT G K D
Sbjct: 703 FGQPGLPGTPGAPGSKGQPGPKGDSGFPGPRGLPGRDGFDGTPGLKGD 750
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 27 ISGRIGLDGRDGLPGEPG------LDGIPGRNGMDGIPGKDGLPGKDGIPG 71
I G IG G GLPG PG L G PG G+ G G DGLPG G+PG
Sbjct: 1044 IKGAIGSPGLPGLPGSPGPKGQTGLPGFPGSRGLPGSKGLDGLPGSPGLPG 1094
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 25/39 (64%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GLPG PG GIPG G G PG++GLPG DG G G K
Sbjct: 1336 GLPGLPGPQGIPGPTGQPGDPGRNGLPGFDGPGGRKGDK 1374
>gi|50950211|ref|NP_001002980.1| collagen alpha-1(VII) chain precursor [Canis lupus familiaris]
gi|33149359|gb|AAO64414.1| type VII collagen [Canis lupus familiaris]
Length = 2936
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 31/68 (45%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
R D G G G G GL G GL G G G GIPG G PGKDG PG G
Sbjct: 2546 RGDTGNPGEKGTKGEPGDKGSAGLLGARGLTGPKGEPGAAGIPGDPGSPGKDGTPGVRGD 2605
Query: 76 KTDHYAMG 83
K D MG
Sbjct: 2606 KGDTGFMG 2613
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNGTK 76
G+ GL+G++G PG+PG DG G G G PG+ DG G+ G PG+ G +
Sbjct: 1832 GKPGLNGKNGEPGDPGEDGRKGEKGDSGAPGREGHDGPKGERGAPGSPGLQ 1882
>gi|321464321|gb|EFX75330.1| hypothetical protein DAPPUDRAFT_8674 [Daphnia pulex]
Length = 90
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 30/48 (62%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G GL G GLPG G+DG+PG G G PG+ GLPG DG+PG G
Sbjct: 1 GPAGLTGIPGLPGRNGVDGLPGVAGTPGSPGQKGLPGIDGLPGLPGNP 48
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++G GL GR+G+ G PG+ G PG G G+PG DGLPG G PG G
Sbjct: 5 LTGIPGLPGRNGVDGLPGVAGTPGSPGQKGLPGIDGLPGLPGNPGPQG 52
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 27 ISGRIGLDGRDGL---PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+ GR G+DG G+ PG PG G+PG +G+ G+PG G G G+PG G K + + G
Sbjct: 11 LPGRNGVDGLPGVAGTPGSPGQKGLPGIDGLPGLPGNPGPQGLTGLPGLPGLKGEIGSPG 70
Query: 84 ADTKSFSDGV 93
+S + G+
Sbjct: 71 LTGESGTPGL 80
>gi|350595876|ref|XP_003360461.2| PREDICTED: collagen alpha-6(IV) chain-like, partial [Sus scrofa]
Length = 1579
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 27 ISGRIGLDGRDGLPGEPG------LDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ GL G G PG PG L G PG G G+PG GLPGKDG PG G+
Sbjct: 574 TPGQPGLRGNKGEPGNPGSVHLPELPGFPGPRGEKGLPGFPGLPGKDGFPGKVGS 628
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNG 74
D+G + G G+ G GLPG PGL G+ G G G+PG G PG G PG G
Sbjct: 992 DVGFPGNKGEDGNAGIPGAVGLPGSPGLPGVAGMRGNPGLPGSPGHPGASGPLGPPGLVG 1051
Query: 75 TK 76
TK
Sbjct: 1052 TK 1053
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 38/79 (48%), Gaps = 21/79 (26%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKD-------- 61
R +IG S +G+ GL G GLPG PGL G PG G+ G+PG
Sbjct: 736 RGEIGPPAS---AGKRGLPGLKGLPGSPGLIGFLGNPGSPGATGLPGLPGPKGEKGSVGL 792
Query: 62 ----GLPGKDGIPGTNGTK 76
G+PG GIPG +G K
Sbjct: 793 IGFPGIPGLPGIPGASGLK 811
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G GL G G PG G G+PG++G G+ G GLPG G+PG G
Sbjct: 911 TGLRGLPGLKGSPGITGFPGVPGQSGSQGLSGAPGLPGASGLPGLKG 957
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 25/42 (59%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G PG PGL GIPG +G+ GIPG G G G G+ G K D
Sbjct: 794 GFPGIPGLPGIPGASGLKGIPGSAGRVGPSGQAGSPGEKGDR 835
Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGKDGLPGKDGIPGT 72
+G S + G G+ G GLPG PG G PG G G PG GL G +G+PGT
Sbjct: 1011 VGLPGSPGLPGVAGMRGNPGLPGSPGHPGASGPLGPPGLVGTKGFPGLPGLHGLNGLPGT 1070
Query: 73 NGT 75
GT
Sbjct: 1071 KGT 1073
>gi|390457532|ref|XP_003731958.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(IV) chain-like
[Callithrix jacchus]
Length = 1669
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G K DH
Sbjct: 854 TGQSGLPGLPGQQGTPGLPGFPGSKGEMGVMGTPGQPGSPGPVGSPGIPGVKGDH 908
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 34/65 (52%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGI---------PGKDGLPGKDGIPGTN 73
G +G G GLPGE PGLDGIPG G G+ G+ G PG DGIPG+
Sbjct: 1103 GSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLLGTPGPTGPAGQKGXPGSDGIPGSA 1162
Query: 74 GTKTD 78
G K +
Sbjct: 1163 GEKGE 1167
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 36/84 (42%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G G G PG G+PG G G+PG DG+PG G G GT G
Sbjct: 1092 MPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLLGTPGPTGPAGQKG 1151
Query: 87 KSFSDGVLPSVQRAIAAGLVIYRF 110
SDG+ S GL F
Sbjct: 1152 XPGSDGIPGSAGEKGEPGLPGRGF 1175
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 38 GLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
G PG+PG G +PGR+G+ G+PG G PG G PG G + Y
Sbjct: 489 GFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLMGQPGAKGEPGEIY 534
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 25/43 (58%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G GL G PG G PG G+ G G GLPG DGIPG G
Sbjct: 1091 GMPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKG 1133
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG------IPGT 72
IG S G G+ G+DG G+PG G G G+ G PG GLPG G +PGT
Sbjct: 962 IGEKGSRGDPGSPGVPGKDGQAGQPGQPGPKGDPGISGTPGSPGLPGPKGSVGGMGLPGT 1021
Query: 73 NGTK 76
G K
Sbjct: 1022 PGEK 1025
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 33 LDGRDGLPGEPGLD-----------GIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYA 81
+ G G PG PGLD G+PG G G+PG G G G+PG G+K +
Sbjct: 824 IKGEKGFPGFPGLDMPGPKGDKGAQGLPGVTGQSGLPGLPGQQGTPGLPGFPGSKGEMGV 883
Query: 82 MGADTKSFSDGVL 94
MG + S G +
Sbjct: 884 MGTPGQPGSPGPV 896
>gi|449278549|gb|EMC86360.1| Collagen alpha-1(IV) chain, partial [Columba livia]
Length = 822
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
IGL G G PGEPGL G+ G G+ G G+ G PG G+PG G K
Sbjct: 282 IGLPGIYGKPGEPGLIGLQGNTGLPGPKGQSGRPGISGVPGPKGQK 327
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGM---DGIPGKDGLPGKDGIPGTNGTKTD 78
T + GR G G+ G+ G PG G PG+NG+ G G+DG+PG G+ G G K D
Sbjct: 391 TGVKGRQGRPGQQGIAGPPGAVGDPGKNGLVGERGTQGQDGMPGPPGVKGEPGIKGD 447
>gi|332025245|gb|EGI65419.1| Collagen alpha-2(XI) chain [Acromyrmex echinatior]
Length = 1700
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIP---GRNGMDGIPGKDGLPGKDGIPG 71
++ DIG + G +GL G GLPG PG G+P G NG+ G+PG G PG G G
Sbjct: 1275 EKGDIGLPGALGFEGPVGLQGPSGLPGLPGERGLPGAAGENGIVGMPGAAGAPGIIGPIG 1334
Query: 72 TNGTKTDH 79
+ G K D
Sbjct: 1335 SKGQKGDK 1342
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 25/37 (67%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G GEPG DG GR G GI G+ GLPGK+G+PG G
Sbjct: 1220 GTKGEPGKDGEDGRIGDPGISGEAGLPGKEGLPGPPG 1256
>gi|37181394|gb|AAQ88511.1| VDLC9339 [Homo sapiens]
gi|109730457|gb|AAI13400.1| GLDN protein [Homo sapiens]
gi|109731021|gb|AAI13398.1| GLDN protein [Homo sapiens]
gi|313883038|gb|ADR83005.1| Unknown protein [synthetic construct]
Length = 427
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 26/50 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G +G+ G G PG G PG G G G+ GL G +G PG G K D
Sbjct: 45 GEKGANGKRGKMGIPGAAGNPGERGEKGDHGELGLQGNEGPPGQKGEKGD 94
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 24/43 (55%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GLDG+ G G G G G+ G GIPG G PG+ G G +G
Sbjct: 33 GLDGQPGPQGPKGEKGANGKRGKMGIPGAAGNPGERGEKGDHG 75
>gi|28422462|gb|AAH46861.1| LOC398560 protein, partial [Xenopus laevis]
Length = 708
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 35/73 (47%)
Query: 13 VHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT 72
V R G S SG G+DGRDG+PG PG G G G G G GLPG G PG
Sbjct: 307 VGPRGITGMPGSKGESGLPGVDGRDGIPGLPGAKGESGEPGAPGEVGLQGLPGMPGNPGA 366
Query: 73 NGTKTDHYAMGAD 85
GT + GA
Sbjct: 367 KGTAGEKGNSGAS 379
>gi|31874250|emb|CAD98018.1| hypothetical protein [Homo sapiens]
Length = 427
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 26/50 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G +G+ G G PG G PG G G G+ GL G +G PG G K D
Sbjct: 45 GEKGANGKRGKMGIPGAAGNPGERGEKGDHGELGLQGNEGPPGQKGEKGD 94
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 24/43 (55%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GLDG+ G G G G G+ G GIPG G PG+ G G +G
Sbjct: 33 GLDGQPGPQGPKGEKGANGKRGKMGIPGAAGNPGERGEKGDHG 75
>gi|301764379|ref|XP_002917620.1| PREDICTED: macrophage receptor MARCO-like [Ailuropoda melanoleuca]
Length = 585
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G G G G PG PG+ GIPG G G PG GLPG G G+ G K + + G+
Sbjct: 338 GAQGSKGDSGKPGPPGVAGIPGMKGDQGQPGAKGLPGSPGAAGSPGAKGEPGSTGS 393
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 27/52 (51%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
I G GL G +G PG+ G G PG+ G G G GL G G PG G K D
Sbjct: 264 IKGEAGLQGPNGAPGKQGDPGTPGQQGEKGSKGDGGLIGPKGEPGAKGDKGD 315
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
SG+ G G G+PG G G PG G+ G PG G PG G PG+ G+
Sbjct: 346 SGKPGPPGVAGIPGMKGDQGQPGAKGLPGSPGAAGSPGAKGEPGSTGS 393
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G+ G G G+PG G+ G G G+ G+ G GL G+ G PG G+
Sbjct: 420 LQGQKGTKGESGVPGPAGMKGEKGTQGLVGLSGAPGLKGQKGEPGAKGS 468
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 25/46 (54%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+D GL G PG+ G G G +G PGK G PG G G G+K D
Sbjct: 252 MDSPPGLQGPPGIKGEAGLQGPNGAPGKQGDPGTPGQQGEKGSKGD 297
>gi|397515281|ref|XP_003827882.1| PREDICTED: gliomedin isoform 1 [Pan paniscus]
gi|397515283|ref|XP_003827883.1| PREDICTED: gliomedin isoform 2 [Pan paniscus]
Length = 427
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 26/50 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G +G+ G G PG G PG G G G+ GL G +G PG G K D
Sbjct: 45 GEKGANGKRGKMGIPGAAGNPGERGEKGDHGELGLQGNEGPPGQKGEKGD 94
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 24/43 (55%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GLDG+ G G G G G+ G GIPG G PG+ G G +G
Sbjct: 33 GLDGQPGPQGPKGEKGANGKRGKMGIPGAAGNPGERGEKGDHG 75
>gi|354488849|ref|XP_003506578.1| PREDICTED: collagen alpha-1(XXII) chain-like [Cricetulus griseus]
Length = 1595
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 32/61 (52%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
D G + G G +G GLPG G G PG G G PGK+G PGK G PG+ G +
Sbjct: 1306 DPGHPGAPGPKGNKGENGSPGLPGFLGPRGPPGEAGEIGAPGKEGAPGKPGEPGSKGERG 1365
Query: 78 D 78
D
Sbjct: 1366 D 1366
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPG---------RNGMDGIPGKD---GLPGKDGIPGTNG 74
+ G GL G G PG+PG G+PG G+ G+PGK GLPG G PG +G
Sbjct: 746 LRGPPGLPGSKGEPGDPGESGVPGIPGPRGEVGEQGLAGLPGKKGEVGLPGAPGFPGVHG 805
Query: 75 TKTDHYAMG 83
K D G
Sbjct: 806 EKGDQGEKG 814
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 28 SGRIGLDGRDGLPGEPGLDGI------PGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G IG G++G PG+PG G PG G G PG G PG GIPG G
Sbjct: 1340 AGEIGAPGKEGAPGKPGEPGSKGERGDPGTKGDKGFPGGKGQPGDPGIPGHKG 1392
>gi|363737130|ref|XP_001234730.2| PREDICTED: collagen alpha-3(IV) chain [Gallus gallus]
Length = 1890
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGR--NGMDGIPGKDGLPGKDGIPGT 72
+ + G A S G+ GL G GLPGE GL G+PG G+ G+ G GLPG G+PG
Sbjct: 799 SKGEEGLAGSKGDRGQPGLPGNPGLPGEMGLPGLPGYGPQGIRGVKGSKGLPGPHGLPGE 858
Query: 73 NGTKTD 78
G K +
Sbjct: 859 AGLKGE 864
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 32/59 (54%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
R D GR S+ GR G G G GE GL G G G G+PG GLPG+ G+PG G
Sbjct: 776 RGDKGRKGSSGFLGRPGSKGHKGSKGEEGLAGSKGDRGQPGLPGNPGLPGEMGLPGLPG 834
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
+PG PGL G PG G DGIPG++G PG G
Sbjct: 697 IPGTPGLPGSPGPRGQDGIPGREGTPGPKG 726
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G+ G G PGEPGL G+ G G+ G+ G+ G PG G+PG G
Sbjct: 1063 LGIPGIYGKPGEPGLIGLLGNTGLPGLKGQSGRPGVSGVPGPRG 1106
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
++G G G+DG+PG PG G PG G GIPG G+PG+ G+
Sbjct: 1367 LAGERGNQGQDGMPGPPGAKGEPGAPGR-GIPGLQGVPGRRGV 1408
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG--KDGIPGTNGTKTDHYAMG 83
G G+ G PG PG G PG G G PG+ G PG G+PG G K D A G
Sbjct: 1241 GQKGQKGSPGFPGTSGDPGPTGYGGFPGEKGDPGYPSPGLPGEPGPKGDPGAPG 1294
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G G G+PG G G PG G GIPG+ G G G PGT+G
Sbjct: 1209 VPGVKGFMGLPGIPGGQGFPGAPGNKGNMGIPGQKGQKGSPGFPGTSG 1256
>gi|354470924|ref|XP_003497694.1| PREDICTED: collagen alpha-6(VI) chain [Cricetulus griseus]
Length = 2257
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 23/40 (57%)
Query: 37 DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
DGL GE G GIPGR G G G G PGK G G GTK
Sbjct: 1465 DGLNGEQGDSGIPGRRGEKGDEGSQGSPGKRGTSGDRGTK 1504
Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD-GIPGTNGTKTDH 79
I GR G G +G G PG G G G G+ G GLPG D + G G K DH
Sbjct: 1476 IPGRRGEKGDEGSQGSPGKRGTSGDRGTKGLRGDPGLPGLDNNVQGPKGLKGDH 1529
>gi|296236156|ref|XP_002807954.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-6(IV) chain
[Callithrix jacchus]
Length = 1666
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 29/52 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G G G PG PG GIPG G+ GIPG G G+ G PGT G K D
Sbjct: 870 LKGEKGSVGSLGFPGMPGFPGIPGARGLKGIPGSTGKIGQSGHPGTPGEKGD 921
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG---KDGIPGTNG 74
+G + SG G+ G+ GLPG PG G G G G G+ GLPG K G+PG G
Sbjct: 783 QVGEPGTPGSSGPYGIKGKSGLPGAPGFQGTSGHPGNKGTRGEKGLPGSLVKKGLPGLKG 842
Query: 75 TKTDHYAMGADTKSFSDGV--LPSV 97
+ +G S G+ LP++
Sbjct: 843 LPGNPGLIGQKGSPGSPGISGLPAL 867
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 29 GRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G G G G PG PGL G PG G G+PG GLPGKDG+PG G+ +
Sbjct: 663 GPPGSHGNKGKPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGIIGSPGLPGSK 722
Query: 83 GADTKSF 89
GA F
Sbjct: 723 GATGDIF 729
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 30/51 (58%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
SG G GRDGL G G G G++G G+PG GLPG G PGT G + +
Sbjct: 1065 SGFKGAKGRDGLIGNMGFPGNKGKDGKVGVPGDVGLPGAPGFPGTTGIRGE 1115
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 27 ISGRIGLDGRDGLPGEPG--LDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G G+ GLPG PG L G+PG G+ G GKDG PG+ G PG G
Sbjct: 578 LPGLPGEKGQPGLPGLPGIGLPGLPGPRGLPGDKGKDGSPGQQGTPGLKG 627
Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 31/53 (58%), Gaps = 10/53 (18%)
Query: 32 GLDGRDGLP------GEPGLDGIPGRNGMDGIPGKDGLP---GKDGIPGTNGT 75
G G GLP G+PGL G+PG G+ G+PG GLP GKDG PG GT
Sbjct: 571 GFPGEKGLPGLPGEKGQPGLPGLPGI-GLPGLPGPRGLPGDKGKDGSPGQQGT 622
>gi|328782948|ref|XP_392096.4| PREDICTED: collagen alpha-1(IV) chain-like [Apis mellifera]
Length = 1836
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 32/71 (45%), Gaps = 21/71 (29%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPG---------------------RNGMDGIPGKDGLPG 65
+ G IG G DG PG PG G+PG R GMDGIPG G+PG
Sbjct: 1237 MKGNIGYRGPDGFPGVPGFPGLPGDEGPPGFPGISGQFAEAGEDGRPGMDGIPGTPGIPG 1296
Query: 66 KDGIPGTNGTK 76
+ G PG G
Sbjct: 1297 QKGAPGEYGPN 1307
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G GLPG+PG G+ G +G+DG G DG G GIPG +G + MG
Sbjct: 107 GFPGAAGLPGKPGSPGVMGPDGLDGCNGTDGRAGSPGIPGVHGERGPPGPMG 158
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDG------------IPGKDGLPGKDGIPGTNG 74
+ G GL G G GE G G+PGR GM G +PG GLPG +G PG G
Sbjct: 1210 MPGLNGLPGEKGERGEQGFVGLPGRKGMKGNIGYRGPDGFPGVPGFPGLPGDEGPPGFPG 1269
Query: 75 TKTDHYAMGADTKSFSDGV 93
G D + DG+
Sbjct: 1270 ISGQFAEAGEDGRPGMDGI 1288
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 18 DIGRAI--STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
D+G +I ++G +G G DG PG PGL G+P + G+PG G PG+ G+PG +
Sbjct: 1315 DVGFSIRGPKGLAGDMGPRGFDGYPGAPGLQGMPS---LPGLPGPKGYPGEIGLPGIS 1369
>gi|326923343|ref|XP_003207896.1| PREDICTED: collagen alpha-2(IV) chain-like [Meleagris gallopavo]
Length = 1716
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIP------GRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
I G G+ G+DGLPG PG I G G+DG+PG GL G+ GIP G+K +
Sbjct: 1260 IQGPFGIPGQDGLPGLPGFSNISGYPGDIGSPGLDGVPGYPGLHGQPGIPAPPGSKGESG 1319
Query: 81 AMGADTKSFSDGV 93
G ++ G
Sbjct: 1320 RAGVSGQAGPKGT 1332
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI---PGKDGLPGKDGIPGT------NGTKT 77
++G G DG G PG+PG G PG +G +G PG G PG G PGT G K
Sbjct: 113 VTGFPGADGIPGHPGQPGSRGKPGHDGCNGTVGDPGDPGTPGHSGFPGTIGVQGPKGQKG 172
Query: 78 DHYAMGADTKS 88
+ Y + D S
Sbjct: 173 EPYVLPPDIAS 183
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 29/59 (49%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
R G + + G G G G PG+PG G PG NG G PG++G PG G G G
Sbjct: 687 RPPKGSQGNPGLPGATGTKGARGFPGDPGPVGFPGLNGTRGDPGREGYPGPPGFIGPRG 745
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 28/51 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G+ GL G G PG+ G G PG G G PG GLPG+ G+PG G H
Sbjct: 1154 GQQGLPGLVGPPGQQGSPGTPGFQGEKGTPGWPGLPGQAGLPGLRGIGGLH 1204
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
Query: 22 AISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI---------------PGKDGLPGK 66
A V+ G G GLPG PGL G PG G+ GI PG GLPG
Sbjct: 776 APGDVLGAAAGPQGDAGLPGFPGLKGAPGDQGIPGIRGADGNPGLPGPKGDPGLQGLPGL 835
Query: 67 DGIPGTNGT 75
G+PGT GT
Sbjct: 836 MGLPGTPGT 844
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 19/89 (21%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGR-------------------NGMDG 56
+ + G A T G G+ G G+PG PG GIPG G+ G
Sbjct: 995 KGEKGDAGETGTKGFFGIKGSKGMPGLPGKTGIPGSPGHPSYVPGVKGDIGAKGLTGLKG 1054
Query: 57 IPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
PG G PG G PG+ G + D A G+
Sbjct: 1055 YPGPTGSPGIRGFPGSTGGRGDKGAPGSS 1083
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G G+PG+ GL G+PG + + G PG G PG DG+PG G
Sbjct: 1259 GIQGPFGIPGQDGLPGLPGFSNISGYPGDIGSPGLDGVPGYPG 1301
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 26/46 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G G PG PGL G G G+ GI G GLPG G+PG+ G
Sbjct: 1172 GTPGFQGEKGTPGWPGLPGQAGLPGLRGIGGLHGLPGTKGLPGSPG 1217
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G +G G+ G PG PG G G G G+PG+ GLPG GI G +G
Sbjct: 1158 LPGLVGPPGQQGSPGTPGFQGEKGTPGWPGLPGQAGLPGLRGIGGLHG 1205
>gi|340730046|ref|XP_003403300.1| PREDICTED: collagen alpha-2(IV) chain-like isoform 2 [Bombus
terrestris]
Length = 892
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 24 STVISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
S +SG G G GLPGE PG G G+ G+ GIPGKDG PG G PG G
Sbjct: 658 SPGVSGPRGASGAPGLPGERGPPGERGPEGQMGLPGIPGKDGAPGLQGPPGIRG 711
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 27/43 (62%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G G +G+ GLPG PG DG PG G GI G+ G+PG G PG
Sbjct: 681 GERGPEGQMGLPGIPGKDGAPGLQGPPGIRGQTGMPGVQGPPG 723
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 23/40 (57%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
PG+PGL G+PG G G+PG G G G PG G K D
Sbjct: 774 PGDPGLPGLPGERGFVGLPGPQGAIGPQGSPGERGEKGDK 813
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 25/40 (62%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
G +G G G PG PG G+PG G++G GK GLPG DG
Sbjct: 542 GSLGPPGSQGSPGLPGEPGVPGPRGIEGAIGKPGLPGLDG 581
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 13 VHDRRDIGRAISTVIS-GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+ D + + T+ S G G G G PG PG G PG G +G G G+PGKDG PG
Sbjct: 643 ISDMLNTNNILETIGSPGVSGPRGASGAPGLPGERGPPGERGPEGQMGLPGIPGKDGAPG 702
Query: 72 TNG 74
G
Sbjct: 703 LQG 705
>gi|326923363|ref|XP_003207906.1| PREDICTED: collagen alpha-1(IV) chain-like [Meleagris gallopavo]
Length = 1670
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTNGTKT 77
G GL G G G PGL GIPG G G PG + G PG DGIPGT G K
Sbjct: 1108 FPGNPGLHGAKGEKGLPGLSGIPGLKGEPGEPGVPGPAGSIGQKGEPGYDGIPGTAGAKG 1167
Query: 78 DHYAMGADTKSF 89
+ A G F
Sbjct: 1168 EQGAPGKGFPGF 1179
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 24 STVISGRIGLDGRDGLPGEPGLD--------GIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
S + G G G DG PG PGL G+PG G+ GIPG G+PG+ G PG G
Sbjct: 707 SPGLPGTPGTPGLDGFPGTPGLQGQKGEPGVGLPGPKGLPGIPGPAGIPGEKGNPGLPGL 766
Query: 76 KTDH 79
+ +
Sbjct: 767 RGEQ 770
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G G+ G G+PG DG PG G G+PG G+PG+ G PG G K D G
Sbjct: 273 GEKGEPGKPGPRGKPGKDGEPGPKGEPGLPGGFGVPGRPGEPGAKGEKGDQGPQG 327
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
L G G PG PG GIPGR +G PGKDGLPG G G +GT
Sbjct: 540 LKGEKGDPGFPGQPGIPGR---EGTPGKDGLPGPQGPKGASGT 579
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+GL G GLPG PG GIPG G G+PG G G G+PG G + D
Sbjct: 737 VGLPGPKGLPGIPGPAGIPGEKGNPGLPGLRGEQGFPGVPGQQGFRGD 784
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPG---------EPGLDGIPGRNGMDGIPGKDGLPG 65
++ + GR S +SG G G G+PG PG+ G PG G+ G G+ GLPG
Sbjct: 1066 EKGEPGRIGSPGLSGDKGEKGNAGIPGMPGSPGPKGSPGMAGFPGNPGLHGAKGEKGLPG 1125
Query: 66 KDGIPGTNGTKTD 78
GIPG G +
Sbjct: 1126 LSGIPGLKGEPGE 1138
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 33 LDGRDGLPGEPG----------LDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
L GR G GEPG G PG G GIPG++G PGKDG+PG G K
Sbjct: 521 LIGRPGAKGEPGDFTYDSILKGEKGDPGFPGQPGIPGREGTPGKDGLPGPQGPK 574
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ L G+ G PGE G G+PG G+ G G+ G+PG+DG PGT G
Sbjct: 945 VSLKGQKGDPGEKGDLGLPGEKGLRGEYGEPGIPGRDGEPGTPG 988
>gi|348533426|ref|XP_003454206.1| PREDICTED: collagen alpha-1(XXVII) chain B-like [Oreochromis
niloticus]
Length = 1708
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G+ G G+ G PG GL G PG G DG PG G PG+ G PG G
Sbjct: 542 LPGQDGRKGQKGYPGPAGLPGEPGERGDDGSPGAKGYPGRQGFPGPAG 589
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPG 71
DR + G + +G+IG+DG G PG PGL G PG G G+ G G GK G G
Sbjct: 1201 DRGERGESGDPGQAGQIGVDGARGEPGAPGLPGKPGPKGQPGLKGSKGDQGQKGKSGARG 1260
Query: 72 TNGTK 76
+GTK
Sbjct: 1261 ASGTK 1265
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G G+ GR+GL G PG+DG PG +G G+ G+ G G G PG G + + G
Sbjct: 1274 TGPRGVVGREGLEGPPGMDGQPGIDGSKGVKGEQGEDGNVGFPGKPGQQGEKGVTG 1329
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
GEPG+ G PG G DG G+ G PG G+PG G + D + GA
Sbjct: 532 GEPGVTGPPGLPGQDGRKGQKGYPGPAGLPGEPGERGDDGSPGA 575
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDHYAMG 83
G +G G GLPG PGL G+PG G G+ G GLPG+ G G G K H + G
Sbjct: 664 GDMGPVGIMGLPGPPGLKGVPGNTGEQGLKGDKGDVGLPGEPGECGFQGDKGSHGSRG 721
Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
I+G G G G+PG PG G G GIPG+ GLPG GIPG G++
Sbjct: 848 IAGEKGDRGNTGVPGPPGEQ---GPMGHPGIPGEMGLPGLQGIPGPPGSR 894
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNGTK 76
G G GR G PG G GI G G GIPG G PG D GIPG +G K
Sbjct: 574 GAKGYPGRQGFPGPAGKMGIKGVRGHIGIPGLFGFPGPDGERGIPGVHGKK 624
>gi|344287255|ref|XP_003415369.1| PREDICTED: collagen alpha-2(IX) chain-like [Loxodonta africana]
Length = 750
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G +G GR G PG GL G+PG+ G G PG G PG+ G+PG +G G
Sbjct: 378 MKGSVGQAGRPGNPGHQGLAGVPGQPGTKGGPGDKGEPGQPGLPGFSGPPGKEGEPGPQG 437
Query: 87 KSFSDGVL 94
+ G++
Sbjct: 438 EIGPQGIM 445
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 30/53 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G G+DG+DG PG PG+ G G+ G G PG GL G G PGT G D
Sbjct: 360 ATGPPGIDGKDGTPGTPGMKGSVGQAGRPGNPGHQGLAGVPGQPGTKGGPGDK 412
>gi|308499527|ref|XP_003111949.1| CRE-DPY-5 protein [Caenorhabditis remanei]
gi|308268430|gb|EFP12383.1| CRE-DPY-5 protein [Caenorhabditis remanei]
Length = 284
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 29 GRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD---HYAM 82
G+ G+ GR G+PG EPG +G PG G G G G PGKDG G +GT A+
Sbjct: 208 GQPGVAGRPGMPGPRGEPGNNGNPGEEGQTGAQGPTGQPGKDGFNGNDGTPGQAGPQGAV 267
Query: 83 GADTK 87
GAD +
Sbjct: 268 GADAE 272
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK------DGIPGTNG 74
I G G+DGLPG+ G G+PG G G PGKDG PG+ G PG +G
Sbjct: 137 CIKCPAGPPGQDGLPGQEGFQGLPGDAGKRGTPGKDGEPGRVGDIGDQGAPGQDG 191
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 38/84 (45%), Gaps = 25/84 (29%)
Query: 29 GRIGLDGRDGLPGEPGL----------------------DGIPGRNGMDGIP---GKDGL 63
G G DG++G PG PGL DG+PG+ G G+P GK G
Sbjct: 109 GGTGPDGKNGPPGLPGLNIPIPNDFPKECIKCPAGPPGQDGLPGQEGFQGLPGDAGKRGT 168
Query: 64 PGKDGIPGTNGTKTDHYAMGADTK 87
PGKDG PG G D A G D +
Sbjct: 169 PGKDGEPGRVGDIGDQGAPGQDGQ 192
>gi|825646|emb|CAA23761.1| unnamed protein product [Homo sapiens]
Length = 740
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G PG++G PG G DG PG DG PG+DG PG G +
Sbjct: 291 GSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGER 326
>gi|444707998|gb|ELW49126.1| Collagen alpha-2(I) chain [Tupaia chinensis]
Length = 1195
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G PG++G PG G DG PG DG PG+DG PG G +
Sbjct: 814 GNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGER 849
>gi|553234|gb|AAA52046.1| alpha-5 type IV collagen, partial [Homo sapiens]
Length = 910
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE 700
>gi|313212608|emb|CBY36561.1| unnamed protein product [Oikopleura dioica]
Length = 1048
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G IG G GLPG+PG G+PG G+DG G GLPG+ PG NGTK + G
Sbjct: 78 FPGPIGPKGNAGLPGKPGKMGVPGIPGLDGQIGASGLPGR---PGCNGTKGETGPAG 131
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 28 SGRIGLDGRDGLP-----GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+G G G GLP G PGL G PG+NG G+PG G PG DG+PG G
Sbjct: 772 TGMSGPPGPQGLPDAGEAGNPGLPGTPGKNGTPGLPGNLGEPGADGLPGAPGA 824
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 13/105 (12%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP------GKDGIPGTN 73
G+ + + G +G G DGLPG PG +G+PG G G PG+ G G+DG+PG
Sbjct: 799 GKNGTPGLPGNLGEPGADGLPGAPGANGLPGETGKAGQPGQKGSTGPRGYDGQDGVPGLP 858
Query: 74 GTKTDHYAMGADTKSFSDGVL--PSVQ--RAIA---AGLVIYRFH 111
G + G+D + G P ++ R A AG V+ R
Sbjct: 859 GEPGEPGQDGSDGPAGRTGEPGKPGIEGPRGFAGNVAGFVVTRHS 903
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 12/57 (21%)
Query: 21 RAISTVISGRIGLDGRDG------------LPGEPGLDGIPGRNGMDGIPGKDGLPG 65
+ S V+ + G DGRDG G+PG G PGR+G DGIPG+DG PG
Sbjct: 612 KGASAVVGPQAGKDGRDGENGPKGERGHQGKSGKPGAAGTPGRSGKDGIPGEDGPPG 668
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 18 DIGRAISTVISGRIGLDGRDGLP---GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D G A + + G G +G GLP GEPG DG+PG G +G+PG+ G G+ G G+ G
Sbjct: 785 DAGEAGNPGLPGTPGKNGTPGLPGNLGEPGADGLPGAPGANGLPGETGKAGQPGQKGSTG 844
Query: 75 TK 76
+
Sbjct: 845 PR 846
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTN 73
G S +SGR G DG +G G PGL G GRNG DG PG G GK G PG++
Sbjct: 248 GSPGSPGVSGRPGADGPNGEKGSAGLPGLSGEAGRNGKDGHPGVPGETGKQGPPGSS 304
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 31 IGLDGRDGLPGEPGLDG------IPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+G G GLPG PG DG PG G +G+PGKDG G+ G+PG G
Sbjct: 344 VGPKGEPGLPGFPGQDGESCGVCKPGPKGTNGLPGKDGQDGEAGMPGRTG 393
>gi|219841908|gb|AAI44536.1| COL22A1 protein [Homo sapiens]
Length = 1319
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDHYAMG 83
G DGLPG+PGL G G G+ G PG+ GLPG G PG G K D G
Sbjct: 487 GEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKG 538
>gi|27469566|gb|AAH42075.1| COL22A1 protein, partial [Homo sapiens]
Length = 854
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDHYAMG 83
++G G G DGLPG+PGL G G G+ G PG+ GLPG G PG G K D G
Sbjct: 14 LNGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKG 73
>gi|30076|emb|CAA29076.1| unnamed protein product [Homo sapiens]
Length = 1043
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDG------LPG 65
DR G S + G GL G+ GLPG +PGL G PG +G G PG++G +PG
Sbjct: 801 DRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGPPGLHGFPGAPGQEGPLGLPGIPG 860
Query: 66 KDGIPGTNGTKTDHYAMG 83
++G+PG G D A G
Sbjct: 861 REGLPGDRGDPGDTGAPG 878
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 31/61 (50%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
DR D G G G G DG+PG PGL G G GMDG G GL G+ G PG+ G
Sbjct: 888 DRGDAGFTGEQGHPGSPGFKGIDGMPGTPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKG 947
Query: 75 T 75
Sbjct: 948 E 948
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
+ G G G +G PG G G PG++G+ G PG G+PG G PG G K D +
Sbjct: 498 LPGPKGFAGINGEPGRKGDKGDPGQHGLPGFPGLKGVPGNIGAPGPKGAKGDSRTI 553
>gi|327261153|ref|XP_003215396.1| PREDICTED: collagen alpha-1(IV) chain-like [Anolis carolinensis]
Length = 1678
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 15 DRRDIGRAISTVISGR---------IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPG 65
D+ D GR S G G+ G G+ G+PG G PG G G G+ G PG
Sbjct: 1074 DKGDPGRTGSPGFPGEKGEKGALGIAGIPGSPGIKGQPGFPGSPGAPGSPGEKGEQGFPG 1133
Query: 66 KDGIPGTNGTKTDHYAMGA 84
G PG+ G K D + GA
Sbjct: 1134 VPGFPGSKGQKGDPGSQGA 1152
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 24 STVISGRIGLDGRDGLPGE-------PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
S I G IG G G PG+ G G PG G++G+PG+DG PG+DG+PG G K
Sbjct: 523 SPGIPGLIGSPGAKGEPGDVFFDSNLKGEKGNPGFPGIEGVPGRDGSPGRDGVPGAPGPK 582
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 5 QGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDG----LPGEPGLDGIPGRNGMDGIPGK 60
QG+ D+ DIG + S G G G G LPG PG DG+PG G+ GI G
Sbjct: 615 QGVGPSGPPGDKGDIGISGSPGTPGLPGPKGEAGRIISLPGTPGADGLPGPPGIQGIQGD 674
Query: 61 DGLPGKDGIPGTNGTK 76
G PG G PG G K
Sbjct: 675 KGDPGTTGRPGQPGEK 690
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL------PGKDGIPGTNGTKTDHYAM 82
G+ GL G+ G PG+PG G+PG++G G+PG+ G PG G PG G K M
Sbjct: 966 GQPGLSGQRGTPGDPGTPGMPGKDGDPGLPGEAGPKGDAGSPGYQGEPGLPGHKGSIGEM 1025
Query: 83 GADTKSFSDGV 93
G +S GV
Sbjct: 1026 GLPGQSGEKGV 1036
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
L G G PG PG++G+PGR DG PG+DG+PG G G +GT
Sbjct: 548 LKGEKGNPGFPGIEGVPGR---DGSPGRDGVPGAPGPKGASGT 587
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 27/51 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G G G G PG G G PG G G+PG+ G G DGIPG+ G K D
Sbjct: 1127 GEQGFPGVPGFPGSKGQKGDPGSQGAAGLPGERGEAGYDGIPGSPGPKGDS 1177
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI-----PGKDGLPGKDGIPGTNG 74
G++ + G G GR G+PGE GL G G+ G GI PG G PG+ G PG G
Sbjct: 1029 GQSGEKGVQGLPGEAGRPGIPGEKGLKGEKGQAGFPGIGFPGAPGDKGDPGRTGSPGFPG 1088
Query: 75 TKTDHYAMG 83
K + A+G
Sbjct: 1089 EKGEKGALG 1097
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G+ G G GLPGE G GIPG G+ G G+ G PG G PG G K D
Sbjct: 1027 LPGQSGEKGVQGLPGEAGRPGIPGEKGLKGEKGQAGFPGI-GFPGAPGDKGD 1077
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 28/51 (54%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
T++ G GL G G G G G+PG G G+ G GLPG G PG +GT
Sbjct: 1362 TLLKGEPGLPGLTGPAGFKGAPGLPGTKGQQGVSGSPGLPGSPGHPGFDGT 1412
>gi|345779496|ref|XP_539177.3| PREDICTED: collagen alpha-1(XXII) chain [Canis lupus familiaris]
Length = 1612
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTDHYAMG 83
G+ G G DGLPG+PGL G G G+ G PG+ GLPG G PG G K + G
Sbjct: 773 KGQPGDRGEDGLPGKPGLRGEVGEQGLAGRPGEKGAAGLPGAPGFPGVRGEKGEQGEKG 831
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 32/56 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G G DG+DG PG PG G PG G DG+PGK GL G+ G G G + A G
Sbjct: 755 TGTPGKDGQDGAPGLPGPKGQPGDRGEDGLPGKPGLRGEVGEQGLAGRPGEKGAAG 810
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 31/61 (50%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKT 77
D G A S G G G GLPG G G G G G PGK+G+PGK G PG G +
Sbjct: 1323 DPGPAGSPGQKGNKGDHGSPGLPGFLGPRGPQGEPGDKGAPGKEGIPGKPGEPGPKGDRG 1382
Query: 78 D 78
D
Sbjct: 1383 D 1383
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 26/48 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
++GR G G GLPG PG G+ G G G G GLPG G PG G
Sbjct: 799 LAGRPGEKGAAGLPGAPGFPGVRGEKGEQGEKGGLGLPGVKGDPGEKG 846
>gi|322787492|gb|EFZ13580.1| hypothetical protein SINV_12260 [Solenopsis invicta]
Length = 638
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNG---------MDGIPGKDGLPGKDGIPGTNGTKT 77
++G G+ G+DG PG PG G+PG G +DG+ GK GL G DG PG G K
Sbjct: 268 LAGPPGVPGKDGYPGLPGPQGLPGPRGEPGSPGLRALDGLAGKPGLQGNDGKPGQKGNKG 327
Query: 78 DHYAMG 83
G
Sbjct: 328 QEGEQG 333
>gi|326666584|ref|XP_687953.4| PREDICTED: collagen alpha-1(VII) chain [Danio rerio]
Length = 2001
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+SG+ G G DG G+ G G+PG +G G+ GKDG PG G PG G K
Sbjct: 1504 LSGKPGPKGNDGSKGDKGEIGLPGTSGSPGLRGKDGEPGSRGEPGDRGVK 1553
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Query: 28 SGRIGLDGRDGLPG---------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G+ GLDG G+PG EPG G G +G GI G GLPG G PG +G +
Sbjct: 1652 TGKDGLDGLPGIPGSKGEAGQKGEPGSKGEKGDHGRAGITGMPGLPGTPGKPGVDGKR 1709
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 28 SGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNGTK 76
SG GL G+DG PG EPG G+ G G+ G PG G PGK G+PG G K
Sbjct: 1529 SGSPGLRGKDGEPGSRGEPGDRGVKGPLGLPGRPGDPGDKGEPGKLGLPGPEGHK 1583
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMD---GIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G GR G+ G PGL G PG+ G+D G+ GKDG G G G G K + A G +
Sbjct: 1680 GEKGDHGRAGITGMPGLPGTPGKPGVDGKRGVSGKDGERGPKGDEGEKGVKGEPGANGNE 1739
Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G+ G PG G G GR G+ G+PG G PGK G+ G G
Sbjct: 1663 IPGSKGEAGQKGEPGSKGEKGDHGRAGITGMPGLPGTPGKPGVDGKRG 1710
>gi|308489139|ref|XP_003106763.1| CRE-MEC-5 protein [Caenorhabditis remanei]
gi|308253417|gb|EFO97369.1| CRE-MEC-5 protein [Caenorhabditis remanei]
Length = 327
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G+ G+ G PG G G G GM+G+PG +GLPG G PG+ G
Sbjct: 131 LKGDTGIPGKVGEPGSTGQPGSKGEKGMEGLPGTNGLPGAPGWPGSKG 178
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 9/56 (16%)
Query: 25 TVISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPG------KDGLPGKDGIPG 71
T I G++G G G PG E G++G+PG NG+ G PG +DGLPG+ G PG
Sbjct: 135 TGIPGKVGEPGSTGQPGSKGEKGMEGLPGTNGLPGAPGWPGSKGEDGLPGRPGSPG 190
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 32/61 (52%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ D+G T + G G G G G+ G G+PG G GIPGK G PG G PG+ G
Sbjct: 96 KGDMGPIGPTGMKGDKGSMGFPGQKGDGGNSGVPGLKGDTGIPGKVGEPGSTGQPGSKGE 155
Query: 76 K 76
K
Sbjct: 156 K 156
>gi|495866|gb|AAA58965.1| collagen type VII [Homo sapiens]
Length = 2912
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G+ GL+G++G PG+PG DG G G G G++G PG +PG G K D G+
Sbjct: 1836 GKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGFPG---VPGGTGPKGDRGETGS 1888
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 28/61 (45%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
S G G G DG PG PG G PG G G+ G GLPG G PG G + G
Sbjct: 1291 SATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPG 1350
Query: 84 A 84
A
Sbjct: 1351 A 1351
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GLDG G PG PGL G G G G+PG+ G PGK+G+ G G +
Sbjct: 2598 VKGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDR 2653
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD--GIPGTNGTK 76
G G DG G PG PG G+PG G G PG G PG+ G+PG G K
Sbjct: 2231 GASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEK 2280
>gi|13021623|gb|AAK11495.1| collagen alpha1(III) [Xenopus laevis]
Length = 96
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
SG G +G+ G GEPG +G+PG G G PG G PG +GIPG
Sbjct: 5 ASGPAGEEGKQGTNGEPGTNGVPGTPGERGTPGFRGPPGSNGIPG 49
>gi|38502902|sp|Q07643.1|CO9A2_MOUSE RecName: Full=Collagen alpha-2(IX) chain; Flags: Precursor
gi|311950|emb|CAA80503.1| alpha2 (IX) collagen [Mus musculus]
Length = 688
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 31/53 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
I+G G+DG+DG PG PG+ G G+ G G PG GL G G PGT G D
Sbjct: 298 ITGPPGIDGKDGTPGIPGMKGSAGQVGRPGSPGHQGLAGVPGQPGTKGGPGDK 350
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G GR G PG GL G+PG+ G G PG G PG+ G+PG +G G
Sbjct: 316 MKGSAGQVGRPGSPGHQGLAGVPGQPGTKGGPGDKGEPGQQGLPGVSGPPGKEGEPGPRG 375
Query: 87 KSFSDGVL 94
+ G++
Sbjct: 376 EIGPQGIM 383
>gi|410989165|ref|XP_004000835.1| PREDICTED: collagen alpha-6(IV) chain, partial [Felis catus]
Length = 1666
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 37 DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI 69
+GLPG PG G+PG G+DG+PGK GLPG G+
Sbjct: 596 NGLPGSPGPRGLPGDQGIDGLPGKQGLPGLPGV 628
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD---GIPGTNG 74
D+G S G++G+ G GLPG PGL GI G G G+PG G PG G PG G
Sbjct: 1079 DVGFPGSKGEDGKVGISGDVGLPGSPGLPGIAGMRGNPGLPGSAGHPGATGPLGAPGLIG 1138
Query: 75 TK 76
TK
Sbjct: 1139 TK 1140
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 35/70 (50%), Gaps = 15/70 (21%)
Query: 27 ISGRIGLDGRDG------------LPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPG 71
I+G+ GL G G LPG PG G G G G+PGKDGLPGK G+PG
Sbjct: 661 IAGQPGLRGNKGKAGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGKIGSPGLPG 720
Query: 72 TNGTKTDHYA 81
+ G D Y
Sbjct: 721 SKGASGDIYG 730
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 17/65 (26%)
Query: 27 ISGRIGLDGRDGLPGE---PGL--------------DGIPGRNGMDGIPGKDGLPGKDGI 69
+ G GL G+DGLPG+ PGL +G PG G+ G+PG G PG G+
Sbjct: 697 LPGFPGLPGKDGLPGKIGSPGLPGSKGASGDIYGAENGAPGEQGLQGLPGDQGFPGDPGL 756
Query: 70 PGTNG 74
PG G
Sbjct: 757 PGPKG 761
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 19 IGRAISTVISGRIGLDGRDGLPGEPGLDGI---PGRNGMDG------IPGKDGLPGKDGI 69
+G+ S GR G+ G+ GLPG PG G PG+ G+ G GK GLPG G+
Sbjct: 784 VGQPGSPGPDGRFGIKGKPGLPGAPGFPGPSGHPGKKGLRGETGPPASAGKRGLPGLKGL 843
Query: 70 PGTNG 74
PG+ G
Sbjct: 844 PGSPG 848
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G DGR G+ G+PGL G PG G G PGK GL G+ G P + G +
Sbjct: 788 GSPGPDGRFGIKGKPGLPGAPGFPGPSGHPGKKGLRGETGPPASAGKR 835
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 12/61 (19%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG------------KDGLPGKDGIPGTNGT 75
+G G G GLPG+ G+DG+PG+ G+ G+PG GLPG G PG G
Sbjct: 596 NGLPGSPGPRGLPGDQGIDGLPGKQGLPGLPGVTLPCIIPGSYGPSGLPGAPGFPGPKGV 655
Query: 76 K 76
+
Sbjct: 656 R 656
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 29 GRIGLDGRDGLP------GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G+ GL G G P G PGL G+PG G+ G G GLPG G+PG G K + +
Sbjct: 818 GKKGLRGETGPPASAGKRGLPGLKGLPGSPGLIGFLGNSGLPGSTGLPGLPGPKGEKGSA 877
Query: 83 G 83
G
Sbjct: 878 G 878
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 18/75 (24%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGL------DGIPGRNGMDGIPGKD------------ 61
G +G+ GL G GLPG PGL G+PG G+ G+PG
Sbjct: 824 GETGPPASAGKRGLPGLKGLPGSPGLIGFLGNSGLPGSTGLPGLPGPKGEKGSAGLVGFP 883
Query: 62 GLPGKDGIPGTNGTK 76
G+PG GIPG +G K
Sbjct: 884 GIPGLPGIPGASGLK 898
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 29 GRIGLDGRDGLPGEPGL---DGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G IGL G GL G PG+ GIPG +G G+ G GLPG +PG+ G
Sbjct: 996 GSIGLRGLPGLKGSPGITGFPGIPGASGSQGLNGAPGLPGASSLPGSKG 1044
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDG---IPGKDGLPGKDGIPGTNG 74
SG +G G G PG PG G PG G DG I GK GLPG G PG +G
Sbjct: 766 SGLLGPKGERGRPGTPGHVGQPGSPGPDGRFGIKGKPGLPGAPGFPGPSG 815
>gi|20988703|gb|AAH29697.1| Collagen, type IX, alpha 2 [Mus musculus]
gi|148698463|gb|EDL30410.1| procollagen, type IX, alpha 2 [Mus musculus]
Length = 688
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 31/53 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
I+G G+DG+DG PG PG+ G G+ G G PG GL G G PGT G D
Sbjct: 298 ITGPPGIDGKDGTPGIPGMKGSAGQVGRPGSPGHQGLAGVPGQPGTKGGPGDK 350
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G GR G PG GL G+PG+ G G PG G PG+ G+PG +G G
Sbjct: 316 MKGSAGQVGRPGSPGHQGLAGVPGQPGTKGGPGDKGEPGQQGLPGVSGPPGKEGEPGPRG 375
Query: 87 KSFSDGVL 94
+ G++
Sbjct: 376 EIGPQGIM 383
>gi|194856466|ref|XP_001968755.1| GG25042 [Drosophila erecta]
gi|190660622|gb|EDV57814.1| GG25042 [Drosophila erecta]
Length = 1776
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 38/87 (43%), Gaps = 20/87 (22%)
Query: 11 LEVHDRRDIGRAISTVISGRIGLDGRDGLPGEP------------------GLDGIPGRN 52
L VH R G GR G+DGRDGL GE G GIPG
Sbjct: 1090 LAVHGR--AGPQGEKGDQGRSGIDGRDGLNGEKGDQGLQGVWGQTGEKGSVGAPGIPGSP 1147
Query: 53 GMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GMDG+PG G PG G PG G K +
Sbjct: 1148 GMDGLPGDAGAPGAVGYPGDRGDKGER 1174
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDG--LPGKDGIPGTNGTKTDHYAMG 83
G G G GL G PG DGIPGR G DG PG G + G+ G G +G K D + G
Sbjct: 679 GEFGFKGEKGLSGAPGNDGIPGRAGRDGYPGIPGQAIKGEPGFNGRDGEKGDKGSFG 735
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 29 GRIGLDGRDGLPGEPGLDGIP------GRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G IG G GLPGEPGL G+P G G G+ G G PG+DG PG G K D
Sbjct: 1315 GLIGERGLPGLPGEPGLVGLPGPIGPAGSKGERGLAGSPGNPGQDGFPGAAGLKGDTGPQ 1374
Query: 83 G 83
G
Sbjct: 1375 G 1375
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPG 65
G PG+PGLDG+PG G G PG DG PG
Sbjct: 1023 GAPGQPGLDGLPGEKGNQGFPGLDGAPG 1050
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGI---PGRNGMDGIPGKDGLPGKDGIPGT 72
+ D+G S+ +G G G GLPG PG DG+ PG G G G DG+ G+ G PG
Sbjct: 558 KGDVGGKCSSCRAGPKGEKGTSGLPGIPGKDGVRGPPGERGYPGERGHDGINGQTGPPGE 617
Query: 73 NG 74
G
Sbjct: 618 KG 619
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
++G G G DGLPGE G G PG +G G+PG G+ G PG +G + D
Sbjct: 1021 LAGAPGQPGLDGLPGEKGNQGFPGLDGAPGLPGDASEKGQKGEPGLSGLRGD 1072
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 31/67 (46%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
I G GL+G G PG PGL G+PG G G PG DG G G+ G G + GA
Sbjct: 925 IEGLRGLNGVKGEPGSPGLVGMPGNKGDRGAPGNDGPKGFAGVTGAPGKRGPAGLTGASG 984
Query: 87 KSFSDGV 93
G
Sbjct: 985 AKGEKGA 991
>gi|405958707|gb|EKC24808.1| Collagen alpha-2(I) chain [Crassostrea gigas]
Length = 1702
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G+ G G GE G+ G PG G+ G G GLPG+DG PGT+G +
Sbjct: 824 GETGVPGPPGFMGEQGIQGPPGPTGLMGPQGPQGLPGQDGFPGTSGER 871
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGR---------NGMDGIPGKDGLPGKDGIPGTNG 74
G G G GLPGEPG+ G PG+ G G PG G PG G+PG G
Sbjct: 863 GFPGTSGERGLPGEPGIPGSPGQMGVMGPQGPQGEPGAPGDRGTPGNQGMPGDTG 917
>gi|344306643|ref|XP_003421995.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain-like
[Loxodonta africana]
Length = 1808
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPG---RNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G GL G GL G+PG+ G+PG G +G PG GLPG++G G G K D + G
Sbjct: 1079 GPQGLPGLPGLKGDPGMAGLPGAKGETGENGAPGIPGLPGREGTGGPQGPKGDKGSQG 1136
>gi|395840104|ref|XP_003792905.1| PREDICTED: collagen alpha-1(XXII) chain [Otolemur garnettii]
Length = 1604
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTKTD 78
G G G DGLPG+PGL G G G+ G PG+ GLPG G PG G K D
Sbjct: 765 KGEPGGRGEDGLPGKPGLRGEVGEQGLAGRPGEKGAAGLPGAPGFPGLRGEKGD 818
>gi|327274794|ref|XP_003222161.1| PREDICTED: collagen alpha-2(I) chain-like [Anolis carolinensis]
Length = 1477
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMD---GIPGKDGLPGKDGIPGTNGTK 76
GR+ +SG G G G PG PG GI G NG+D G PG G G+ G PG NGT
Sbjct: 264 GRSGERGVSGPQGARGFPGTPGLPGFKGIRGHNGLDGRKGEPGAQGTKGEPGAPGENGTP 323
Query: 77 TDHYAMG 83
A G
Sbjct: 324 GQSGARG 330
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK------TDHY 80
I+G G G G G PG++G G G DG PG DG PG+DG PG G + H
Sbjct: 1012 IAGPPGARGPSGPIGNPGVNGAHGEAGRDGNPGSDGSPGRDGAPGYKGERGAPGNTGSHG 1071
Query: 81 AMGA 84
A+GA
Sbjct: 1072 ALGA 1075
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
E ++ + G A + G G +G+ G GEPG G G G+ G+PG GLPG DG
Sbjct: 469 ETGNKGEPGSAGAAGNPGPSGEEGKRGSTGEPGSSGPSGPAGLRGVPGSRGLPGSDG 525
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
++G G GRDG PG DG PGR+G G G+ G PG G G G H A+G
Sbjct: 1030 VNGAHGEAGRDG---NPGSDGSPGRDGAPGYKGERGAPGNTGSHGALGAPGPHGAVGPVG 1086
Query: 87 KSFSDG 92
K+ S G
Sbjct: 1087 KTGSRG 1092
>gi|380021507|ref|XP_003694605.1| PREDICTED: fibril-forming collagen alpha chain-like [Apis florea]
Length = 1507
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEP---------GLDGIPGRNGMDGIPGKDGLPGK 66
R + GR SG G G+DG+PGE G G PG G GIPG G+PG
Sbjct: 416 RGETGRPGQPGESGPQGPQGKDGIPGEKGSIGASGLVGAPGFPGARGQPGIPGNPGIPGA 475
Query: 67 DGIPGTNGTK 76
G+PG G +
Sbjct: 476 KGMPGFPGER 485
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 28/45 (62%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+G GL G G PGE G+ G+PG G DG PG G PG+DG PG
Sbjct: 1159 FTGLQGLPGSIGPPGEKGIPGLPGLPGKDGEPGPRGSPGRDGNPG 1203
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 27 ISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ G G G GLPG PG GIPG + G+PGKDG PG G PG +G
Sbjct: 1153 LKGHRGFTGLQGLPGSIGPPGEKGIPG---LPGLPGKDGEPGPRGSPGRDGN 1201
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 27/48 (56%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G+ GL G G G GL G G G GIPG GLPGKDG PG G+
Sbjct: 1148 EGQKGLKGHRGFTGLQGLPGSIGPPGEKGIPGLPGLPGKDGEPGPRGS 1195
>gi|383863475|ref|XP_003707206.1| PREDICTED: collagen alpha-1(IV) chain-like [Megachile rotundata]
Length = 875
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 24 STVISGRIGLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHY 80
S +SG GL G GLPGE PG G G+ G G+PGKDG PG G PG G
Sbjct: 641 SPGVSGPRGLPGTPGLPGERGPPGERGPEGKIGPPGMPGKDGAPGLQGPPGVRGQTGMPG 700
Query: 81 AMGADTKSFSD 91
G+ +S ++
Sbjct: 701 LQGSPGRSITE 711
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G +G+ G PG PG DG PG G G+ G+ G+PG G PG + T+++
Sbjct: 664 GERGPEGKIGPPGMPGKDGAPGLQGPPGVRGQTGMPGLQGSPGRSITESE 713
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK------DGIPGTNGTKTDHYAM 82
G GLDG+ GLPG PG G G G+PG GLPG G PG+ G K +
Sbjct: 414 GPPGLDGKPGLPGFPGPKGA---TGFPGVPGSQGLPGPRGEIGAPGSPGSQGLKGEPGEP 470
Query: 83 GAD 85
G D
Sbjct: 471 GRD 473
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
G+ G G G PG PGLDG PG + G PG G G G+PG+ G +GA
Sbjct: 401 QGQKGELGDAGYPGPPGLDGKPG---LPGFPGPKGATGFPGVPGSQGLPGPRGEIGAPGS 457
Query: 88 SFSDGV 93
S G+
Sbjct: 458 PGSQGL 463
>gi|441636228|ref|XP_003273437.2| PREDICTED: collagen alpha-2(IX) chain [Nomascus leucogenys]
Length = 661
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G G++G+DG PG PG+ G G+ G G PG GL G G PGT G D
Sbjct: 302 ATGPPGINGKDGTPGTPGMKGSAGQAGRPGSPGHQGLAGVPGQPGTKGGPGDQ 354
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G GR G PG GL G+PG+ G G PG G PG G+PG +G
Sbjct: 320 MKGSAGQAGRPGSPGHQGLAGVPGQPGTKGGPGDQGEPGPQGLPGFSG 367
>gi|50729642|ref|XP_416597.1| PREDICTED: collagen alpha-1(VIII) chain [Gallus gallus]
Length = 739
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 32 GLDGRDGLPGE---PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G G+ G PGE PGL G+PG G G G GLPG G+PG G K + GA
Sbjct: 430 GFPGKPGFPGEVGAPGLRGLPGPTGPKGEAGHKGLPGLPGVPGLVGPKGEPGLPGAQ 486
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+G G G GLPG PG+ G+ G G G+PG GL G GIPG
Sbjct: 453 TGPKGEAGHKGLPGLPGVPGLVGPKGEPGLPGAQGLQGPSGIPG 496
>gi|47220209|emb|CAF98974.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1333
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Query: 22 AISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD-----GIPGTNGTK 76
A++ + SG G G+DG PG+PGL GIP G DG+PG G G+ G+PG G K
Sbjct: 445 AVTGLGSGATGSPGKDGAPGQPGLPGIP---GTDGLPGPTGPRGEKVNSELGLPGAVGQK 501
Query: 77 TDH 79
+
Sbjct: 502 GEQ 504
>gi|410969849|ref|XP_003991404.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(VI) chain [Felis
catus]
Length = 1038
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 31/58 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G+ G+DG DG+ GE G G+PG G G G G PG G G G K + A GAD
Sbjct: 322 KGKRGIDGVDGMKGEMGYPGLPGCKGSPGFDGAQGPPGPKGDAGAFGLKGEKGAPGAD 379
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
L GE G DG PG NG +G PG G PG G PG NGTK
Sbjct: 504 LMGERGEDGPPG-NGTEGFPGFPGYPGSRGPPGINGTK 540
>gi|403258375|ref|XP_003921748.1| PREDICTED: collagen alpha-1(XXIV) chain [Saimiri boliviensis
boliviensis]
Length = 1684
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
SG+ G+ G G PG G+ G G +G+ G PGK G PGK G+PG G+
Sbjct: 1275 SGKPGIPGLQGPPGPKGIQGYHGADGISGHPGKVGSPGKQGLPGIRGS 1322
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
ISG G G G G PG+ G PGR G+ G PG G+ G G+PG+ G +
Sbjct: 1301 ISGHPGKVGSPGKQGLPGIRGSPGRTGLAGAPGPPGVKGSSGLPGSPGVQ 1350
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 38/82 (46%), Gaps = 21/82 (25%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPG------------------LDGIPGRNGMDGIPG 59
D+G I G G++G GL GEPG L G PG G +G+ G
Sbjct: 1000 DVGPPGEMGIEGPPGIEGESGLQGEPGAKGDIGLGGSVGGTGEPGLRGEPGAPGEEGLQG 1059
Query: 60 KDGL---PGKDGIPGTNGTKTD 78
KDGL PG GIPG +G K +
Sbjct: 1060 KDGLKGVPGGRGIPGEDGEKGE 1081
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G PG PG +G+ G++G+ G+PG G+PG+DG G G
Sbjct: 1044 GLRGEPGAPGEEGLQGKDGLKGVPGGRGIPGEDGEKGEMG 1083
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPG---EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GL G GLPG E G+ G+ G G G PG+ GL G +G PG G +
Sbjct: 565 MQGAKGLKGHPGLPGLRGEKGIPGLAGNVGSPGYPGRQGLAGPEGNPGPKGVR 617
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGI---PGKDGLPGKDGIPGTNGT 75
G G DG+ G PG G PG+ G+ GI PG+ GL G G PG G+
Sbjct: 1294 GYHGADGISGHPGKVGSPGKQGLPGIRGSPGRTGLAGAPGPPGVKGS 1340
>gi|301760031|ref|XP_002915835.1| PREDICTED: collagen alpha-1(XXVII) chain-like [Ailuropoda
melanoleuca]
Length = 1854
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G +G G PG PGL+G PGR G G PG DG+ G+ G PG G
Sbjct: 937 GPEGDEGHMGPPGAPGLEGQPGRKGFPGRPGPDGMKGEPGDPGRPG 982
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD 67
GR G+ G GLPG G+ GR G +G+PG DG PG+D
Sbjct: 1409 GRRGIQGLQGLPGP---RGVVGRQGPEGVPGPDGFPGRD 1444
>gi|194207633|ref|XP_001498143.2| PREDICTED: collagen alpha-2(IX) chain [Equus caballus]
Length = 720
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 30/53 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G G+DG+DG PG PG+ G G+ G G PG GL G G PGT G D
Sbjct: 330 ATGPPGIDGKDGAPGTPGVKGSAGQAGRPGNPGHQGLAGVPGQPGTKGGPGDK 382
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
+ G G GR G PG GL G+PG+ G G PG G PG+ G+PG +G
Sbjct: 348 VKGSAGQAGRPGNPGHQGLAGVPGQPGTKGGPGDKGEPGQQGLPGFSG 395
>gi|324518837|gb|ADY47214.1| Collagen alpha-2(IV) chain [Ascaris suum]
Length = 335
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+ DIG + G +G G G+ GE G G+PG G G+PG+ G PG G+PG G
Sbjct: 104 KGDIGPMGPVGMKGEMGPQGYPGVKGERGYPGVPGVKGDRGMPGRTGEPGIPGVPGIKGE 163
Query: 76 K 76
K
Sbjct: 164 K 164
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 3 RVQGMLQ-VLEVHDR-RDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK 60
++ +LQ + +H R ++G+A + G G G G PGE G+DG+PG+ GM GIPG
Sbjct: 44 EIEVLLQHIKNLHARLNELGKAGPPGLDGAPGYPGHKGEPGERGMDGLPGQRGMIGIPGV 103
Query: 61 DG 62
G
Sbjct: 104 KG 105
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G+ G G DG PG PG G PG GMDG+PG+ G+ GIPG G
Sbjct: 63 GKAGPPGLDGAPGYPGHKGEPGERGMDGLPGQRGM---IGIPGVKG 105
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 28 SGRIGLDGRDGLPGEPGLDG---IPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
G G+ G G PG PG+ G +PGR G GIPG G+ G+ G+ G GT G
Sbjct: 122 QGYPGVKGERGYPGVPGVKGDRGMPGRTGEPGIPGVPGIKGEKGMEGVPGTNGQPGPPGW 181
Query: 85 DTKSFSDGV 93
+ DGV
Sbjct: 182 PGRKGEDGV 190
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 15/67 (22%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---------------GKDGLPGKDGIPG 71
+ G G+ GR G PG PG+ GI G GM+G+P G+DG+ G+ G PG
Sbjct: 139 VKGDRGMPGRTGEPGIPGVPGIKGEKGMEGVPGTNGQPGPPGWPGRKGEDGVAGRPGSPG 198
Query: 72 TNGTKTD 78
G K +
Sbjct: 199 FPGRKGE 205
>gi|402854081|ref|XP_003891708.1| PREDICTED: collagen alpha-2(IX) chain [Papio anubis]
Length = 449
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G G++G+DG PG PG+ G G+ G G PG GL G G PGT G D
Sbjct: 59 ATGPPGINGKDGTPGTPGMKGSAGQAGRPGSPGHQGLAGVPGQPGTKGGPGDQ 111
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G GR G PG GL G+PG+ G G PG G PG G+PG +G G
Sbjct: 77 MKGSAGQAGRPGSPGHQGLAGVPGQPGTKGGPGDQGEPGPQGLPGFSGPPGKEGEPGPRG 136
Query: 87 KSFSDGVL 94
+ G++
Sbjct: 137 EIGPQGIM 144
>gi|358340745|dbj|GAA31679.2| collagen alpha-1(IV) chain [Clonorchis sinensis]
Length = 1720
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 15 DRRDIGRAISTVIS--GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGL---PGKDGI 69
D IG V+ GR G+ G G PG+PG G+P G+DG PG+ GL GKDG
Sbjct: 475 DPGPIGPKGDCVVCPDGRPGIPGPKGFPGQPGPAGLP---GLDGAPGQKGLVGPQGKDGQ 531
Query: 70 PGTNGTKTDHYAMGAD 85
PG G K + G+D
Sbjct: 532 PGFPGEKGEKGERGSD 547
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 27/49 (55%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G G G G GE GL G+PG+ G G PG G+PG DG PG G K
Sbjct: 686 KGLPGFPGEQGREGEKGLPGMPGKQGKPGYPGPVGMPGPDGDPGYAGPK 734
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ GR+G+ G G G PG GIPG G+ G PG GLPG G PG G + +
Sbjct: 576 MPGRMGVLGETGPKGYPGPKGIPGPKGLRGEPGPAGLPGFHGTPGKPGQRGE 627
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
+ G G+ G G+PG+PG GI G G+ G+PG DGL G GI G G + GA
Sbjct: 21 LRGPDGIRGIPGIPGDPGPKGISGDKGVPGVPGVDGLKGAPGIKGPKGYPGEEGCCGA 78
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 24 STVISGRIGLDGRDGLPGE--PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
T G GL G G PGE P +DG PG G+ G+PG GL G+DG PG G K D
Sbjct: 428 ETGERGDTGLPGIKGEPGEDGPTIDGPPGPKGVKGMPGLAGLRGRDGDPGPIGPKGD 484
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 16 RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
R D G A V+ GR G G+ G PG+PG +G+ G G+D +PG + L G G+PG G
Sbjct: 832 RGDPGEA-GDVLQGRKGEKGQKGQPGDPGPEGLRGEKGVDVVPGLE-LKGPKGLPGPKG 888
>gi|340725304|ref|XP_003401012.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(XXV) chain-like
[Bombus terrestris]
Length = 608
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNGTKTDHYAMG 83
SG+ G G+ G G PGLDG+ G G G G+ GLPG DGIPG G K + A G
Sbjct: 462 SGKPGDAGKPGAMGPPGLDGMKGAQGEPGTKGERGDPGLPGTDGIPGAEGPKGEKGAKG 520
>gi|390347052|ref|XP_780851.3| PREDICTED: uncharacterized protein LOC575353 [Strongylocentrotus
purpuratus]
Length = 2776
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 30/57 (52%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGA 84
+G G G G G PG G PG G +G PG+DGL G DG G G++ A GA
Sbjct: 1847 AGAAGTPGEAGTRGSPGSAGTPGSTGENGHPGEDGLAGSDGKTGATGSQGRDGASGA 1903
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
+G+ G G G PG PG +G G G GI G GLPG++G PGT GT
Sbjct: 1709 TGKRGAHGSAGAPGTPGANGDGGSMGEVGIAGDLGLPGQNGAPGTQGT 1756
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 34/72 (47%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
EV D IG +SG +GL G G G G G PG G+ G GK G G G PG
Sbjct: 1663 EVGDNGRIGNTGPMGVSGAVGLSGAKGQVGSSGEQGTPGTVGLLGETGKRGAHGSAGAPG 1722
Query: 72 TNGTKTDHYAMG 83
T G D +MG
Sbjct: 1723 TPGANGDGGSMG 1734
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G G PGE G G PG G G G++G PG+DG+ G++G + G D S
Sbjct: 1845 GEAGAAGTPGEAGTRGSPGSAGTPGSTGENGHPGEDGLAGSDGKTGATGSQGRDGAS 1901
>gi|194387528|dbj|BAG60128.1| unnamed protein product [Homo sapiens]
Length = 204
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 28/55 (50%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G+ G D G PG PG G+ G G G PG GLPG GI G NG KT G
Sbjct: 139 GKAGEDSHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLKTSQPRTG 193
>gi|240848597|ref|NP_001155871.1| collagen alpha-1(IV) chain precursor [Gallus gallus]
Length = 1669
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
G G G+ G G+PG DG PG G G+PG G+PG+ G PG G K D G
Sbjct: 272 GEKGEPGKPGPRGKPGKDGEPGPKGEPGLPGGFGIPGRPGEPGAKGEKGDQGPQG 326
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
L G G PG PG GIPGR +G PGKDGLPG G G +GT
Sbjct: 539 LKGEKGDPGFPGQPGIPGR---EGTPGKDGLPGPQGPKGASGT 578
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+GL G GLPG PG GIPG G G+PG G G G+PG G + D
Sbjct: 736 VGLPGPKGLPGIPGPAGIPGEKGNPGLPGLRGEQGFPGVPGQQGFRGD 783
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 31 IGLDGRDGLPGE-------PGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
IGL G G PG+ G G PG G GIPG++G PGKDG+PG G K
Sbjct: 521 IGLPGAKGEPGDFTYDSILKGEKGDPGFPGQPGIPGREGTPGKDGLPGPQGPK 573
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPG---------EPGLDGIPGRNGMDGIPGKDGLPG 65
++ + GR S +SG G G G+PG PG+ G PG G+ G G+ GLPG
Sbjct: 1065 EKGEPGRTGSPGLSGDKGEKGNAGIPGMPGAPGPKGSPGIAGFPGNPGLHGAKGEKGLPG 1124
Query: 66 KDGIPGTNGTKTD 78
GIPG G +
Sbjct: 1125 LSGIPGLKGEPGE 1137
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTNGTKT 77
G GL G G G PGL GIPG G G PG + G PG DGIPGT G K
Sbjct: 1107 FPGNPGLHGAKGEKGLPGLSGIPGLKGEPGEPGVPGPAGSIGQKGEPGYDGIPGTAGAKG 1166
Query: 78 DH 79
+
Sbjct: 1167 EQ 1168
>gi|4502961|ref|NP_000085.1| collagen alpha-1(VII) chain precursor [Homo sapiens]
gi|1345650|sp|Q02388.2|CO7A1_HUMAN RecName: Full=Collagen alpha-1(VII) chain; AltName: Full=Long-chain
collagen; Short=LC collagen; Flags: Precursor
gi|987125|gb|AAA75438.1| alpha-1 type VII collagen [Homo sapiens]
Length = 2944
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 28/61 (45%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
S G G G DG PG PG G PG G G+ G GLPG G PG G + G
Sbjct: 1291 SATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPG 1350
Query: 84 A 84
A
Sbjct: 1351 A 1351
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GLDG G PG PGL G G G G+PG+ G PGK+G+ G G +
Sbjct: 2630 VKGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDR 2685
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD--GIPGTNGTK 76
G G DG G PG PG G+PG G G PG G PG+ G+PG G K
Sbjct: 2263 GASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEK 2312
>gi|359323606|ref|XP_003434049.2| PREDICTED: collagen alpha-1(VI) chain [Canis lupus familiaris]
Length = 1026
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 31/58 (53%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G+ G+DG DG+ GE G G+PG G G G G PG G G G K + A GAD
Sbjct: 321 KGKRGIDGVDGMKGEMGYPGLPGCKGSPGFDGAQGPPGPKGDAGAFGRKGEKGAPGAD 378
>gi|410491794|ref|YP_006907016.1| putative minor tail protein [Propionibacterium phage P105]
gi|407302105|gb|AFT97659.1| putative minor tail protein [Propionibacterium phage P105]
Length = 274
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIP 70
S + G +G G GL G G DG+PG NG DG+ G +G G+DG+P
Sbjct: 124 SAGLVGPVGPQGSPGLNGVKGPDGLPGANGKDGVAGVNGADGRDGVP 170
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 29 GRIGLDGRDGLPGEPGLDGI---PGRNGMDGIPGKDGLPG---KDGIPGTNGT 75
G G+DGRDG+ G GL G G G++G+ G DGLPG KDG+ G NG
Sbjct: 111 GPAGVDGRDGVNGSAGLVGPVGPQGSPGLNGVKGPDGLPGANGKDGVAGVNGA 163
>gi|119585297|gb|EAW64893.1| collagen, type VII, alpha 1 (epidermolysis bullosa, dystrophic,
dominant and recessive), isoform CRA_a [Homo sapiens]
Length = 2944
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 28/61 (45%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
S G G G DG PG PG G PG G G+ G GLPG G PG G + G
Sbjct: 1291 SATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPG 1350
Query: 84 A 84
A
Sbjct: 1351 A 1351
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GLDG G PG PGL G G G G+PG+ G PGK+G+ G G +
Sbjct: 2630 VKGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDR 2685
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD--GIPGTNGTK 76
G G DG G PG PG G+PG G G PG G PG+ G+PG G K
Sbjct: 2263 GASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEK 2312
>gi|29549|emb|CAA68698.1| unnamed protein product [Homo sapiens]
Length = 1212
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 15/65 (23%)
Query: 29 GRIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTN 73
G +G G GLPGE PGLDGIPG G G+PG + G PG DGIPG+
Sbjct: 1058 GSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSA 1117
Query: 74 GTKTD 78
G K +
Sbjct: 1118 GEKGE 1122
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 30/55 (54%)
Query: 25 TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G K DH
Sbjct: 809 TGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPWGAPGLPGEKGDH 863
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 37/84 (44%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G GL G G G PG G+PG G G+PG DG+PG G G GT G
Sbjct: 1047 MPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKG 1106
Query: 87 KSFSDGVLPSVQRAIAAGLVIYRF 110
+ SDG+ S GL F
Sbjct: 1107 EPGSDGIPGSAGEKGEPGLPGRGF 1130
>gi|1054873|gb|AAA80977.1| alpha-2 IX collagen, partial [Homo sapiens]
Length = 675
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G G++G+DG PG PG+ G G+ G G PG GL G G PGT G D G
Sbjct: 285 ATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQGEPG 341
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G G+ G PG GL G+PG+ G G PG G PG G+PG +G G
Sbjct: 303 MKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQGEPGPQGLPGFSGPPGKEGEPGPRG 362
Query: 87 KSFSDGVL 94
+ G++
Sbjct: 363 EIGPQGIM 370
>gi|392347959|ref|XP_003749982.1| PREDICTED: collagen alpha-1(XV) chain-like isoform 2 [Rattus
norvegicus]
Length = 1323
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
V G G G DG PGEPG G G+ G+DG G+ G+ G+ G G NG+
Sbjct: 604 VFVGPPGSPGEDGAPGEPGPQGPEGQPGLDGASGQPGMKGEKGARGPNGS 653
Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 21/39 (53%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G PG PG DG PG G G G+ GL G G PG G K
Sbjct: 607 GPPGSPGEDGAPGEPGPQGPEGQPGLDGASGQPGMKGEK 645
>gi|407228400|ref|NP_001094005.1| collagen alpha-1(XV) chain precursor [Rattus norvegicus]
gi|392347957|ref|XP_003749981.1| PREDICTED: collagen alpha-1(XV) chain-like isoform 1 [Rattus
norvegicus]
gi|149045855|gb|EDL98855.1| procollagen, type XV, isoform CRA_a [Rattus norvegicus]
Length = 1345
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
V G G G DG PGEPG G G+ G+DG G+ G+ G+ G G NG+
Sbjct: 604 VFVGPPGSPGEDGAPGEPGPQGPEGQPGLDGASGQPGMKGEKGARGPNGS 653
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 21/39 (53%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G PG PG DG PG G G G+ GL G G PG G K
Sbjct: 607 GPPGSPGEDGAPGEPGPQGPEGQPGLDGASGQPGMKGEK 645
>gi|402911097|ref|XP_003918179.1| PREDICTED: collagen alpha-5(IV) chain-like, partial [Papio anubis]
Length = 566
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 27 ISGRIGLDGRDGLPG---------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
I G G G+ GLPG PGL G PGR G++G+ G GLPG G PG G
Sbjct: 161 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 217
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G G G PG PGL+G+ G G+ G+PG G+ G GIPG+ G +
Sbjct: 179 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGIPGSAGPE 228
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
+ G G PG+PGL G+PG G G PG G PG+ PG NG K D
Sbjct: 161 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGR---PGLNGMKGD 203
>gi|119585300|gb|EAW64896.1| collagen, type VII, alpha 1 (epidermolysis bullosa, dystrophic,
dominant and recessive), isoform CRA_d [Homo sapiens]
Length = 2978
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 28/61 (45%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
S G G G DG PG PG G PG G G+ G GLPG G PG G + G
Sbjct: 1291 SATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPG 1350
Query: 84 A 84
A
Sbjct: 1351 A 1351
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 27 ISGRIGLDGRDG------LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G GLDG G PG PGL G G G G+PG+ G PGK+G+ G G +
Sbjct: 2630 VKGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDR 2685
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD--GIPGTNGTK 76
G G DG G PG PG G+PG G G PG G PG+ G+PG G K
Sbjct: 2263 GASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEK 2312
>gi|262225419|ref|YP_003280910.1| pCQ3_61 [Streptomyces sp. W9]
gi|261597595|gb|ACX85562.1| pCQ3_61 [Streptomyces sp. W9]
Length = 226
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 25/37 (67%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLP 64
SGR G+DG DG PGE G G PG G DG+ G+DG P
Sbjct: 88 SGRDGVDGADGQPGESGPTGKPGAAGTDGVDGQDGEP 124
>gi|149045856|gb|EDL98856.1| procollagen, type XV, isoform CRA_b [Rattus norvegicus]
Length = 1387
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
V G G G DG PGEPG G G+ G+DG G+ G+ G+ G G NG+
Sbjct: 604 VFVGPPGSPGEDGAPGEPGPQGPEGQPGLDGASGQPGMKGEKGARGPNGS 653
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 21/39 (53%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G PG PG DG PG G G G+ GL G G PG G K
Sbjct: 607 GPPGSPGEDGAPGEPGPQGPEGQPGLDGASGQPGMKGEK 645
>gi|119627629|gb|EAX07224.1| collagen, type IX, alpha 2, isoform CRA_a [Homo sapiens]
gi|119627631|gb|EAX07226.1| collagen, type IX, alpha 2, isoform CRA_a [Homo sapiens]
gi|119627633|gb|EAX07228.1| collagen, type IX, alpha 2, isoform CRA_a [Homo sapiens]
gi|119627635|gb|EAX07230.1| collagen, type IX, alpha 2, isoform CRA_a [Homo sapiens]
gi|119627637|gb|EAX07232.1| collagen, type IX, alpha 2, isoform CRA_a [Homo sapiens]
Length = 595
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G G++G+DG PG PG+ G G+ G G PG GL G G PGT G D
Sbjct: 205 ATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQ 257
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G G+ G PG GL G+PG+ G G PG G PG G+PG +G G
Sbjct: 223 MKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQGEPGPQGLPGFSGPPGKEGEPGPRG 282
Query: 87 KSFSDGVL 94
+ G++
Sbjct: 283 EIGPQGIM 290
>gi|119585298|gb|EAW64894.1| collagen, type VII, alpha 1 (epidermolysis bullosa, dystrophic,
dominant and recessive), isoform CRA_b [Homo sapiens]
Length = 2609
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 28/61 (45%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
S G G G DG PG PG G PG G G+ G GLPG G PG G + G
Sbjct: 1291 SATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPG 1350
Query: 84 A 84
A
Sbjct: 1351 A 1351
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD--GIPGTNGTK 76
G G DG G PG PG G+PG G G PG G PG+ G+PG G K
Sbjct: 2263 GASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEK 2312
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKD------GLPGKDGIPGTNGTKTDHYAMGA 84
G GLPG+ G G PG G DG GKD G+PG G+PG G K + GA
Sbjct: 2241 QGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGA 2297
>gi|345306746|ref|XP_001509200.2| PREDICTED: collagen alpha-1(IV) chain-like [Ornithorhynchus anatinus]
Length = 1414
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 7 MLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPG-RNGMDGIPGKDGL-- 63
ML ++ DR G A G G G GLPG PG+ GIPG R G +G+PGK GL
Sbjct: 1082 MLNLIFKGDRGAPGTAGVRGFHGLRGDKGMPGLPGSPGIPGIPGFRRGDEGLPGKPGLLG 1141
Query: 64 P-GKDGIPGTNGT 75
P G+ G+PG GT
Sbjct: 1142 PMGQRGLPGERGT 1154
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G +G++G G PG+PG G+PG +G +G G+ G G DG PG G GA
Sbjct: 101 VPGFLGINGIPGHPGQPGTRGLPGLDGCNGTKGEIGFSGSDGFPGQQGPPGHPGLKGAKG 160
Query: 87 KS 88
+S
Sbjct: 161 ES 162
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
+G+ G G G G PG G+ G+ G G PG GIPG +G K AMGAD
Sbjct: 1001 EGKPGPTGTSGFPGPPGERGVSGLVGFPGTPGLQGIPGASGLKGSSGAMGAD 1052
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIP---GTNGTKTDHYAMGAD 85
G GL G G GE G G+PG G++GIPG G PG G+P G NGTK + G+D
Sbjct: 82 GAAGLPGHYGTKGEKGPMGVPGFLGINGIPGHPGQPGTRGLPGLDGCNGTKGEIGFSGSD 141
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIP---GKDGLPGKDGIPGTNGTK 76
G G+ G G PG PGL GIPG +G+ G G DGLPG G+PG G +
Sbjct: 1017 GERGVSGLVGFPGTPGLQGIPGASGLKGSSGAMGADGLPGYAGLPGHKGDR 1067
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 28 SGRIGLDG-----------RDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+GRIGL G G PGEPGL G+PG G G PG G G DG PG G K
Sbjct: 915 AGRIGLPGPKGAPGEVLGAEPGAPGEPGLLGLPGDKGFLGEPGFPGERGFDGRPGLLGVK 974
Query: 77 TDHYAMGA 84
+ + GA
Sbjct: 975 GERGSPGA 982
>gi|119585301|gb|EAW64897.1| collagen, type VII, alpha 1 (epidermolysis bullosa, dystrophic,
dominant and recessive), isoform CRA_e [Homo sapiens]
Length = 2597
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 28/61 (45%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
S G G G DG PG PG G PG G G+ G GLPG G PG G + G
Sbjct: 1291 SATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPG 1350
Query: 84 A 84
A
Sbjct: 1351 A 1351
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKD--GIPGTNGTK 76
G G DG G PG PG G+PG G G PG G PG+ G+PG G K
Sbjct: 2263 GASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEK 2312
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDG------LPGKDGIPGTNGTKTDHYAMGA 84
G GLPG+ G G PG G DG GKDG +PG G+PG G K + GA
Sbjct: 2241 QGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGA 2297
>gi|334346842|ref|XP_001375175.2| PREDICTED: collagen alpha-1(IV) chain-like [Monodelphis domestica]
Length = 1672
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 12 EVHDRRDIGRAIST--VISGRIGL------DGRDGLPGEPGLD---GIPGRNGMDGIPGK 60
E+ ++ D G+ T V GR GL G G PG+PG G+PG NG+ G+ G
Sbjct: 458 EMGEKGDKGQKCLTCDVEPGRPGLPGPRGPQGEIGFPGQPGAKGDRGLPGHNGLAGMTGP 517
Query: 61 DGLPGKDGIPGTNGTKTDHY 80
GLPG+ G+PG G + +
Sbjct: 518 PGLPGQRGVPGAKGEPGEIF 537
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 15/64 (23%)
Query: 30 RIGLDGRDGLPGE------PGLDGIPGRNGMDGIPG---------KDGLPGKDGIPGTNG 74
+G G G+PGE PGLDG+PG G G PG + G PG DGIPG++G
Sbjct: 1107 NVGYPGNPGIPGEKGDKGLPGLDGVPGVKGDAGQPGHPGPAGPAGQKGEPGGDGIPGSSG 1166
Query: 75 TKTD 78
K +
Sbjct: 1167 EKGE 1170
>gi|17539916|ref|NP_500598.1| Protein COL-110 [Caenorhabditis elegans]
gi|373219714|emb|CCD69718.1| Protein COL-110 [Caenorhabditis elegans]
Length = 304
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 32/58 (55%)
Query: 26 VISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
+G G G G PG GL G+ GR G DG+ G+ G PGK GI G GTK + A G
Sbjct: 150 CPAGEPGEPGPRGSPGNNGLPGLKGRRGFDGLDGRPGRPGKTGIDGVPGTKGEDGADG 207
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+ GR G DG DG PG PG+ G+DG+PG G G DG PG
Sbjct: 172 LKGRRGFDGLDGRPGR------PGKTGIDGVPGTKGEDGADGEPG 210
>gi|334350075|ref|XP_001376430.2| PREDICTED: collagen alpha-5(IV) chain-like [Monodelphis domestica]
Length = 1773
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 24/75 (32%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMD------------------------GIPGKDGL 63
+G G+ G+ GLPG PG G+PG G+D G PG+ G
Sbjct: 1197 TGSPGVKGQPGLPGWPGTTGLPGHKGLDGPPGSPGIPGQPGPVGIQGHPGLPGSPGEKGK 1256
Query: 64 PGKDGIPGTNGTKTD 78
PG+DGIPG +G K +
Sbjct: 1257 PGQDGIPGPSGQKGE 1271
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 29/54 (53%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
GL G G PG G G PG +G G+PG DGL G G+PG G K D G D
Sbjct: 889 GLPGLKGTPGPRGSTGFPGPSGTPGLPGLDGLAGPKGLPGDPGRKGDPGPPGFD 942
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 11/70 (15%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIP-----------GKDGLPGKDG 68
G+A+S+ I G +G+ G GLPG+PGL G+PG G G P G G+ G G
Sbjct: 711 GKAVSSFIVGGLGIXGERGLPGKPGLPGLPGNRGPVGPPGMGPPGPVGEKGFLGMAGNPG 770
Query: 69 IPGTNGTKTD 78
PG +GTK D
Sbjct: 771 PPGVSGTKGD 780
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRN---GMDGIPGKDGLPGKDGIPG 71
D+ D G + I G G G+DGLPG PG+ G + G GI G+ GLPGK G+PG
Sbjct: 679 DKGDTGFPGAPGIPGLSGTPGQDGLPGPPGIKGKAVSSFIVGGLGIXGERGLPGKPGLPG 738
Query: 72 TNGTK 76
G +
Sbjct: 739 LPGNR 743
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 34 DGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGI--PGTNGTK 76
DG GLPG+PGL G+PG + GIPG G PG GI PG G K
Sbjct: 800 DGDVGLPGDPGLPGMPG---LPGIPGSKGEPGSTGIGLPGLPGPK 841
>gi|195558814|ref|XP_002077316.1| GD11594 [Drosophila simulans]
gi|194202417|gb|EDX15993.1| GD11594 [Drosophila simulans]
Length = 244
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 29 GRIGLDGRDGLPGEPGLDGIP------GRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
G IG G GLPGEPGL G+P G G G+ G G PG+DG PG G K D
Sbjct: 154 GTIGERGLPGLPGEPGLVGLPGPIGPAGSKGERGLAGSPGQPGQDGFPGAPGLKGDTGPQ 213
Query: 83 G 83
G
Sbjct: 214 G 214
>gi|11386161|ref|NP_001843.1| collagen alpha-2(IX) chain precursor [Homo sapiens]
gi|20137328|sp|Q14055.2|CO9A2_HUMAN RecName: Full=Collagen alpha-2(IX) chain; Flags: Precursor
gi|3510460|gb|AAC33512.1| collagen type IX alpha 2 chain [Homo sapiens]
gi|119627634|gb|EAX07229.1| collagen, type IX, alpha 2, isoform CRA_d [Homo sapiens]
gi|187950331|gb|AAI36328.1| Collagen, type IX, alpha 2 [Homo sapiens]
gi|187952367|gb|AAI36327.1| Collagen, type IX, alpha 2 [Homo sapiens]
Length = 689
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G G++G+DG PG PG+ G G+ G G PG GL G G PGT G D
Sbjct: 299 ATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQ 351
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G G+ G PG GL G+PG+ G G PG G PG G+PG +G G
Sbjct: 317 MKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQGEPGPQGLPGFSGPPGKEGEPGPRG 376
Query: 87 KSFSDGVL 94
+ G++
Sbjct: 377 EIGPQGIM 384
>gi|159962|gb|AAA29440.1| 2-alpha collagen precursor (COLL 2-alpha), partial [Paracentrotus
lividus]
Length = 1051
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGM---DGIPGKDGLPGKDGIPGTNG 74
D+G S SG G +G G PG+ G +G PG +G+ DG G G PG+DG PGT G
Sbjct: 104 DMGEIGSPGESGSRGTNGEPGTPGQTGPNGAPGEDGLAGNDGKVGPTGTPGRDGPPGTTG 163
Query: 75 TKTDH 79
+ +
Sbjct: 164 DRGNS 168
>gi|47212298|emb|CAF90561.1| unnamed protein product [Tetraodon nigroviridis]
Length = 715
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKS 88
G G+ G G G+PGL G GR G+ G+PG GLPGK G PG G + GA +
Sbjct: 292 GPPGIRGAPGAKGDPGLPGPDGREGIPGLPGSKGLPGKSGAPGDAGPQGLPGLPGAYGQK 351
Query: 89 FSDG--VLPSVQRAIAAGLVIYRF 110
G V P+V R + + F
Sbjct: 352 GVSGEKVKPAVSRCGRMQMHVQPF 375
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD------GLPGKDGIPGTNGTKTDHYA 81
+G G+ G G G PG+ G PG G G+PG D GLPG G+PG +G D
Sbjct: 279 TGEPGIPGAQGDGGPPGIRGAPGAKGDPGLPGPDGREGIPGLPGSKGLPGKSGAPGDAGP 338
Query: 82 MG 83
G
Sbjct: 339 QG 340
>gi|350404000|ref|XP_003486976.1| PREDICTED: collagen alpha chain CG42342-like [Bombus impatiens]
Length = 681
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNGTKTDHYAMG 83
SG+ G G+ G G PGLDG+ G G G G+ GLPG DGIPG G K + A G
Sbjct: 535 SGKPGDAGKPGAMGPPGLDGMKGAQGEPGTKGERGDPGLPGTDGIPGAEGPKGEKGAKG 593
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 27/51 (52%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
G G G G GE GL G+PG NG DG G G PG GI G G K D+
Sbjct: 372 GTKGDTGSPGPKGEQGLPGLPGLNGTDGETGIQGPPGLPGISGPKGEKGDY 422
>gi|350418536|ref|XP_003491889.1| PREDICTED: collagen alpha-1(IV) chain-like [Bombus impatiens]
Length = 1941
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 13 VHDRRDIGRAISTVISGRIGLDGRDGLPGEPG--------LDGIPGRNGMDGIPGKDGLP 64
V ++ G I G +G GRDG+ G+ G LDG+PG G G+PG+DGLP
Sbjct: 1226 VSEKGQKGEPGMPGIRGPVGPPGRDGIDGDKGERGLSCNCLDGLPGLKGEPGLPGRDGLP 1285
Query: 65 GKDGIPGTNGTKTDHYAMG 83
G G+ G G + H + G
Sbjct: 1286 GPIGLKGDAGVRGFHGSQG 1304
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GR G G G G+PG+ +DGIPG G G+PG+ G PGK+GIPG G+ +
Sbjct: 668 GRDGEKGQKGERGYAGPRGVPGD--VDGIPGAPGEPGLPGEPGTPGKNGIPGFPGSPGEK 725
Query: 80 YAMGA 84
+G
Sbjct: 726 GEIGG 730
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 41 GEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
GE GL G+PG++G +G+PG+ G G+ G+PG G K D G
Sbjct: 1463 GEKGLPGLPGKHGREGVPGRPGEKGERGLPGLPGHKGDQGPYG 1505
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG---------IPGTNGTKTDH 79
+DG G PGEPGL G PG G +GIPG G PG+ G +PG G K D
Sbjct: 691 VDGIPGAPGEPGLPGEPGTPGKNGIPGFPGSPGEKGEIGGRCIDCLPGLPGIKGDR 746
>gi|327274154|ref|XP_003221843.1| PREDICTED: collagen alpha-1(XXV) chain-like [Anolis carolinensis]
Length = 703
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 28/47 (59%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
GL G G GE G+ G PG G G+PGKDG PG DG PG G K D
Sbjct: 566 GLAGPKGDRGEKGIPGDPGPRGPYGLPGKDGEPGLDGFPGPRGEKGD 612
>gi|119623090|gb|EAX02685.1| collagen, type IV, alpha 5 (Alport syndrome), isoform CRA_c [Homo
sapiens]
Length = 1268
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
PG+PGL G PGR+G G+PG GLPG+ G+PG G+K +
Sbjct: 662 PGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE 700
>gi|930045|emb|CAA33387.1| alpha-1 (III) collagen [Homo sapiens]
Length = 1078
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 37/72 (51%)
Query: 12 EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
E R + G A + G G DG+DG PG+PG +G+PG G G G G G +GIPG
Sbjct: 295 EPGPRGERGEAGIPGVPGAKGEDGKDGSPGDPGANGLPGAAGERGALGSRGPAGPNGIPG 354
Query: 72 TNGTKTDHYAMG 83
G + A G
Sbjct: 355 EKGPAGERGAPG 366
>gi|301778481|ref|XP_002924661.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-2(IV) chain-like
[Ailuropoda melanoleuca]
Length = 1731
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAM 82
+ G G G +G PG+ G+ G PG++G+ G PG G PG G PG G K D A+
Sbjct: 513 LPGPKGFPGINGEPGKKGIQGDPGQHGIPGFPGFKGAPGNMGPPGPKGVKGDSRAV 568
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 28/47 (59%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
GR+GL G G G PG+ G PG G+ GI G GLPG G PG+ G
Sbjct: 1182 GRVGLPGDKGDYGWPGIRGSPGFPGIRGISGLHGLPGTKGFPGSPGA 1228
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 37 DGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G+PG G DG PG G+ G PG++G PG G G G+K GAD
Sbjct: 719 QGIPGLSGADGAPGLKGLPGDPGREGFPGPPGFVGPRGSKGAAGLPGAD 767
>gi|256069431|ref|XP_002571142.1| collagen alpha chain [Schistosoma mansoni]
Length = 263
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 28/47 (59%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
G G +G G PG G DG PG +G DG+ GKDG PG G+PG G
Sbjct: 166 GPEGPEGASGPPGPAGYDGPPGMDGKDGLSGKDGKPGPQGVPGEQGA 212
>gi|118404410|ref|NP_001072718.1| collagen, type 1, alpha 2 precursor [Xenopus (Silurana) tropicalis]
gi|116487368|gb|AAI25682.1| collagen, type 1, alpha 2 [Xenopus (Silurana) tropicalis]
gi|197246659|gb|AAI68447.1| collagen, type 1, alpha 2 [Xenopus (Silurana) tropicalis]
Length = 1354
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G G G G G PGL G+ G G DG PG DG PG+DG+PG G +
Sbjct: 891 AGSAGSRGPSGPVGSPGLTGVHGEAGRDGNPGNDGPPGRDGLPGVKGER 939
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
S ++G G GRDG PG DG PGR+G+ G+ G+ G PG G G+ G A+G
Sbjct: 905 SPGLTGVHGEAGRDGNPGN---DGPPGRDGLPGVKGERGYPGGTGPAGSLGAVGAPGAVG 961
Query: 84 ADTKSFSDGVLPSVQRAIAAGLVIYR 109
KS + G V A A G R
Sbjct: 962 PSGKSGNRGEPGPVGHAGAVGPAGPR 987
>gi|357617033|gb|EHJ70553.1| endonuclease-reverse transcriptase HmRTE-e01 [Danaus plexippus]
Length = 710
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 31/57 (54%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
G +GL G GLPGE G G PG G G PG DG+ G G PG+ G + D G D
Sbjct: 530 GPMGLPGPVGLPGEAGEPGRPGDTGPRGPPGLDGMKGAQGEPGSKGERGDPGLPGTD 586
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 31/64 (48%), Gaps = 12/64 (18%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKD------------GLPGKDGIPGTNG 74
+ G +GL G G PG PG G G G+DG+ G GLPG DGIPG G
Sbjct: 534 LPGPVGLPGEAGEPGRPGDTGPRGPPGLDGMKGAQGEPGSKGERGDPGLPGTDGIPGQEG 593
Query: 75 TKTD 78
K D
Sbjct: 594 PKGD 597
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
GR T G GLDG G GEPG G G G+PG DG+PG++G G G K
Sbjct: 548 GRPGDTGPRGPPGLDGMKGAQGEPGSKG---ERGDPGLPGTDGIPGQEGPKGDKGYK 601
>gi|312086773|ref|XP_003145209.1| hypothetical protein LOAG_09634 [Loa loa]
gi|307759626|gb|EFO18860.1| hypothetical protein LOAG_09634 [Loa loa]
Length = 99
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 27 ISGRIGLDGRDGLPGEPGLD---GIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+ G G DGRDGLPG+PG + G PG G+ G+ G G G+ G+PG G K
Sbjct: 32 LEGPPGRDGRDGLPGDPGDEGPRGPPGETGLPGMQGPQGEEGEKGLPGLQGPK 84
>gi|449508319|ref|XP_002191828.2| PREDICTED: collagen alpha-1(XXIV) chain [Taeniopygia guttata]
Length = 2316
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
+G +G G +G+PG PG G+ G+ G G G GLPG G PG G K
Sbjct: 1892 TGIVGYPGPEGIPGNPGKTGLSGKPGPKGNKGNSGLPGLAGYPGARGPK 1940
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 24 STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
T +SG+ G G G G PGL G PG G G+P G+PG G PG G K
Sbjct: 1909 KTGLSGKPGPKGNKGNSGLPGLAGYPGARGPKGLP---GMPGPMGAPGLKGEK 1958
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 25/43 (58%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G G G G G GLDG PG G +GI G+ G PGK G+PG
Sbjct: 1517 GPSGPQGAKGRRGPRGLDGPPGELGTEGIKGERGDPGKKGVPG 1559
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 24/42 (57%)
Query: 33 LDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
L G G PGEPGL GIPG G G PG+ G GK G G G
Sbjct: 1686 LPGIAGPPGEPGLMGIPGPEGTPGNPGQRGRLGKKGEKGQLG 1727
>gi|348540676|ref|XP_003457813.1| PREDICTED: collagen alpha-1(XI) chain-like [Oreochromis niloticus]
Length = 1744
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 31/59 (52%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGAD 85
+ G G G+ G+ G PG DG PG G +G PG+ GLPG G+ G G GAD
Sbjct: 621 LPGEKGPQGKKGMRGLPGNDGPPGHPGREGTPGEKGLPGPPGVQGPVGYPGQRGVKGAD 679
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G +GL G G G+ G+ G+PG +G G PG++G PG+ G+PG G +
Sbjct: 616 QGLVGLPGEKGPQGKKGMRGLPGNDGPPGHPGREGTPGEKGLPGPPGVQ 664
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
G G GR+G PGE GL G PG G G PG+ G+ G DG+ G G+K +
Sbjct: 641 GPPGHPGREGTPGEKGLPGPPGVQGPVGYPGQRGVKGADGLRGLKGSKGE 690
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 27/48 (56%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
G IG G GL G PG G G+ GM G+PG DG PG G GT G K
Sbjct: 608 GIIGFPGPQGLVGLPGEKGPQGKKGMRGLPGNDGPPGHPGREGTPGEK 655
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKD---GLPGKDGIPGTNGTK 76
GL G DG PG PG +G PG G+ G PG G PG+ G+ G +G +
Sbjct: 635 GLPGNDGPPGHPGREGTPGEKGLPGPPGVQGPVGYPGQRGVKGADGLR 682
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 30/65 (46%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
GR G +G G+DGLPG PG G PG G G PG G+ G G G G D
Sbjct: 836 GRNGEPGPKGAVGPAGKDGLPGHPGQRGEPGFQGKTGPPGPSGVVGPQGKSGEPGPPGDR 895
Query: 80 YAMGA 84
GA
Sbjct: 896 GHPGA 900
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 28 SGRIGLDGRDGLPG------EPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
SG +G G+ G PG PG G+PG +G+ G GK+G G G+PGT+G
Sbjct: 877 SGVVGPQGKSGEPGPPGDRGHPGAPGVPGEHGLPGTAGKEGGKGDPGLPGTSG 929
>gi|119627630|gb|EAX07225.1| collagen, type IX, alpha 2, isoform CRA_b [Homo sapiens]
Length = 508
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDH 79
+G G++G+DG PG PG+ G G+ G G PG GL G G PGT G D
Sbjct: 118 ATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQ 170
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
+ G G G+ G PG GL G+PG+ G G PG G PG G+PG +G G
Sbjct: 136 MKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQGEPGPQGLPGFSGPPGKEGEPGPRG 195
Query: 87 KSFSDGVL 94
+ G++
Sbjct: 196 EIGPQGIM 203
>gi|50502|emb|CAA29946.1| unnamed protein product [Mus musculus]
Length = 1154
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 35/71 (49%)
Query: 15 DRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
D+ G T SG GL G+ G PG PG G G G+ G PG+ G PG G PG G
Sbjct: 844 DKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGTPGLPG 903
Query: 75 TKTDHYAMGAD 85
K DH G+
Sbjct: 904 EKGDHGLPGSS 914
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 27/45 (60%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
G G G DGLPGE G GIPGR G +G+PG G G+ G PG
Sbjct: 691 FPGLPGPKGVDGLPGEIGRPGIPGRPGFNGLPGNPGPQGQKGEPG 735
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMD--------GIPGKDGLPGKDGIPGTNGTK 76
+ G G GR G+PG PG +G+PG G G+PG G PG GIPGT G K
Sbjct: 700 VDGLPGEIGRPGIPGRPGFNGLPGNPGPQGQKGEPGIGLPGLKGQPGLPGIPGTPGEK 757
>gi|339251922|ref|XP_003371184.1| putative nematode cuticle collagen N- domain protein [Trichinella
spiralis]
gi|316968613|gb|EFV52871.1| putative nematode cuticle collagen N- domain protein [Trichinella
spiralis]
Length = 584
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 38 GLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
GLPGEPGL PGR G GI G+ G PG+ G G G
Sbjct: 445 GLPGEPGL---PGRKGPHGIMGERGDPGEQGEKGPPG 478
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 20/37 (54%)
Query: 32 GLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
GL G GLPG G GI G G G G+ G PGK G
Sbjct: 445 GLPGEPGLPGRKGPHGIMGERGDPGEQGEKGPPGKPG 481
Score = 35.0 bits (79), Expect = 6.0, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 29/78 (37%), Gaps = 36/78 (46%)
Query: 37 DGLPGEPGLDGIPGRNGM------------------------------------DGIPGK 60
DG PG PG+DG PGR+G G+PG+
Sbjct: 390 DGEPGLPGIDGEPGRDGKLLTEEETMEPCQRCPSGPPGDPGLPGPKGPTGPQGEKGLPGE 449
Query: 61 DGLPGKDGIPGTNGTKTD 78
GLPG+ G G G + D
Sbjct: 450 PGLPGRKGPHGIMGERGD 467
>gi|432866531|ref|XP_004070849.1| PREDICTED: collagen alpha-3(IX) chain-like [Oryzias latipes]
Length = 677
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 20 GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG 68
G+ SG+ G G+ G PG PG G+PG G+DG+ G DG PGKDG
Sbjct: 46 GKPGPPGFSGKPGPKGKAGTPGLPGKAGLPGLPGIDGLTGPDGPPGKDG 94
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
G G G+ G G+ G G+PG+ G+ G+PG DGL G DG PG +G
Sbjct: 49 GPPGFSGKPGPKGKAGTPGLPGKAGLPGLPGIDGLTGPDGPPGKDG 94
>gi|332243954|ref|XP_003271135.1| PREDICTED: collagen alpha-1(XIX) chain [Nomascus leucogenys]
Length = 1142
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 31 IGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
+G+ GR G G PG GI G G+ G+PG G PG DG+PG
Sbjct: 625 VGIPGRTGSQGPPGEPGIQGPRGLPGLPGTPGTPGNDGVPG 665
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGI---------PGKDGLPGKDGIPGTNGTKT 77
I G G+ G G PG PGL G PG G G PG GLPG+ GIPG G K
Sbjct: 499 IIGSQGVKGEPGDPGSPGLMGSPGLKGQQGSAGSTGPRGPPGDVGLPGEHGIPGKQGIKG 558
Query: 78 D 78
+
Sbjct: 559 E 559
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 22/33 (66%)
Query: 39 LPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
LPGEPGLDG PG G G G+ GLPG G PG
Sbjct: 586 LPGEPGLDGSPGAPGPRGPKGERGLPGVHGSPG 618
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 18 DIGRAISTVISGRIGLDGRDGLPGEPGLDGIP------GRNGMDGIPGKDGLPGKDGIPG 71
DIG SG+ G++G+DG+PG G+ G P G G GIPG G G+ G PG
Sbjct: 912 DIGFPGPEGPSGKPGINGKDGIPGAQGIMGKPGDRGPKGERGDQGIPGDRGSQGERGKPG 971
Query: 72 TNGTK 76
G K
Sbjct: 972 LTGMK 976
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.144 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,048,028,328
Number of Sequences: 23463169
Number of extensions: 101083810
Number of successful extensions: 1094818
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10644
Number of HSP's successfully gapped in prelim test: 1531
Number of HSP's that attempted gapping in prelim test: 308960
Number of HSP's gapped (non-prelim): 449915
length of query: 111
length of database: 8,064,228,071
effective HSP length: 79
effective length of query: 32
effective length of database: 6,210,637,720
effective search space: 198740407040
effective search space used: 198740407040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)