Query psy6898
Match_columns 111
No_of_seqs 115 out of 1285
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 21:17:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m0f_B GPB, scaffolding protei 14.0 42 0.0014 19.3 0.2 5 107-111 54-58 (68)
2 3ucp_A UNDA; beta-barrel, C-ty 10.5 34 0.0012 27.1 -1.3 43 68-110 30-72 (874)
3 1buu_A Protein (mannose-bindin 10.4 58 0.002 21.0 0.0 16 37-52 3-18 (168)
4 2fhf_A Pullulanase; multiple d 6.4 1E+02 0.0035 26.8 -0.2 45 67-111 10-66 (1083)
5 1al0_B Scaffolding protein GPB 5.2 1.2E+02 0.004 19.3 -0.4 5 107-111 106-110 (120)
6 4e04_A Bacteriophytochrome (li 3.3 4.2E+02 0.014 19.6 1.3 7 105-111 169-175 (327)
7 3s7o_A Bacteriophytochrome; bi 3.2 4.4E+02 0.015 19.7 1.3 7 105-111 187-193 (343)
8 3lqc_A DNA repair protein XRCC 3.2 2.5E+02 0.0086 19.4 -0.1 15 97-111 136-150 (189)
9 2ool_A Sensor protein; bacteri 3.0 4.7E+02 0.016 19.2 1.3 7 105-111 182-188 (337)
10 4eho_A Bacteriophytochrome, PA 2.5 5.9E+02 0.02 20.2 1.3 7 105-111 167-173 (635)
No 1
>1m0f_B GPB, scaffolding protein B; bacteriophage, cryo electron microscopy, procapsid, morphogenesis, microviridae, assembly; 16.00A {Enterobacteria phage ALPHA3} SCOP: i.6.1.1
Probab=13.99 E-value=42 Score=19.27 Aligned_cols=5 Identities=80% Similarity=1.763 Sum_probs=0.0
Q ss_pred EEeeC
Q psy6898 107 IYRFH 111 (111)
Q Consensus 107 ~~r~~ 111 (111)
|||||
T Consensus 54 FYRFn 58 (68)
T 1m0f_B 54 FYRFH 58 (68)
T ss_pred heeec
No 2
>3ucp_A UNDA; beta-barrel, C-type cytochrome, electron transport, C-type H cell surface, transport protein; HET: HEC; 1.76A {Shewanella SP} PDB: 3ufh_A* 3ufk_A*
Probab=10.46 E-value=34 Score=27.09 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHhhhcceeEEee
Q psy6898 68 GIPGTNGTKTDHYAMGADTKSFSDGVLPSVQRAIAAGLVIYRF 110 (111)
Q Consensus 68 G~~G~~G~~G~~G~~G~~g~~g~~g~~~~~~~~~~~g~~~~r~ 110 (111)
|..|..|.+|++|..|........-...-....+..|.+.+.|
T Consensus 30 g~dG~~g~~G~~g~~g~~~~~~~~~~~~~~~~~~~~g~~~v~f 72 (874)
T 3ucp_A 30 GSDGKDGEDGKPGPVGLDISQATTLKATLEDVKIDNGTVSVDI 72 (874)
T ss_dssp ---------------CEETTTCSCCEEEEEEEEEETTEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCccccceEEEEeeeEEeeCCcEEEEE
No 3
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=10.39 E-value=58 Score=21.04 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q psy6898 37 DGLPGEPGLDGIPGRN 52 (111)
Q Consensus 37 ~G~~G~~G~~G~~G~~ 52 (111)
.+++|++|.+|.+|..
T Consensus 3 ~~~~g~~g~~g~~g~~ 18 (168)
T 1buu_A 3 EVSQGPKGQKGDRGDS 18 (168)
T ss_dssp ----------------
T ss_pred CCCCCCCCCCCCCCCc
No 4
>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*
Probab=6.41 E-value=1e+02 Score=26.81 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCc---HHHhhhcceeEEee---------C
Q psy6898 67 DGIPGTNGTKTDHYAMGADTKSFSDGVLPS---VQRAIAAGLVIYRF---------H 111 (111)
Q Consensus 67 ~G~~G~~G~~G~~G~~G~~g~~g~~g~~~~---~~~~~~~g~~~~r~---------~ 111 (111)
.|.+|.+|.+|.+|.+|.+-+.+.....+. ...+..+..+++.+ |
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ihy~~~~~~~~~~ 66 (1083)
T 2fhf_A 10 SGSPGSPGNPGNPGTPGTPDPQDVVVRLPDVAVPGEAVQASARQAVIHLVDIAGITS 66 (1083)
T ss_dssp ----------------------CCCCBCCCSSSCCCSCCCCTTEEEEEECCCCCTTC
T ss_pred CCCCCCCCCCCCCCCCCCCcccCcccccCCCCCCCCCCCCCeEEEEEeccccccccc
No 5
>1al0_B Scaffolding protein GPB; complex (virus capsid proteins), bacteriophage, procapsid, chaperone, icosahedral virus; 3.50A {Enterobacteria phage PHIX174} PDB: 1cd3_B
Probab=5.21 E-value=1.2e+02 Score=19.32 Aligned_cols=5 Identities=80% Similarity=1.763 Sum_probs=0.0
Q ss_pred EEeeC
Q psy6898 107 IYRFH 111 (111)
Q Consensus 107 ~~r~~ 111 (111)
|||||
T Consensus 106 FYRFn 110 (120)
T 1al0_B 106 FYRFH 110 (120)
T ss_dssp SCCCC
T ss_pred heecc
No 6
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=3.34 E-value=4.2e+02 Score=19.57 Aligned_cols=7 Identities=57% Similarity=1.241 Sum_probs=0.0
Q ss_pred eeEEeeC
Q psy6898 105 LVIYRFH 111 (111)
Q Consensus 105 ~~~~r~~ 111 (111)
+++||||
T Consensus 169 VmIYrF~ 175 (327)
T 4e04_A 169 VMIYRFA 175 (327)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
No 7
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=3.25 E-value=4.4e+02 Score=19.69 Aligned_cols=7 Identities=29% Similarity=1.089 Sum_probs=0.0
Q ss_pred eeEEeeC
Q psy6898 105 LVIYRFH 111 (111)
Q Consensus 105 ~~~~r~~ 111 (111)
+++||||
T Consensus 187 VmIYrF~ 193 (343)
T 3s7o_A 187 VMLYKFA 193 (343)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
No 8
>3lqc_A DNA repair protein XRCC1; allosteric disulfide, scaffolding protein, DNA repair, DNA D nucleus, phosphoprotein, polymorphism, DNA replication; HET: DNA; 2.35A {Homo sapiens} PDB: 3k75_B* 1xna_A 1xnt_A 3k77_A*
Probab=3.19 E-value=2.5e+02 Score=19.40 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=0.0
Q ss_pred HHHhhhcceeEEeeC
Q psy6898 97 VQRAIAAGLVIYRFH 111 (111)
Q Consensus 97 ~~~~~~~g~~~~r~~ 111 (111)
+......||.|+|||
T Consensus 136 fnk~~~yGLsFv~~~ 150 (189)
T 3lqc_A 136 YSKDSPFGLSFVRFH 150 (189)
T ss_dssp TCTTSCCEEEEEEEE
T ss_pred CccccccceEEEEEe
No 9
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=3.05 E-value=4.7e+02 Score=19.25 Aligned_cols=7 Identities=29% Similarity=0.937 Sum_probs=0.0
Q ss_pred eeEEeeC
Q psy6898 105 LVIYRFH 111 (111)
Q Consensus 105 ~~~~r~~ 111 (111)
+++||||
T Consensus 182 V~IYrF~ 188 (337)
T 2ool_A 182 IKVYQFA 188 (337)
T ss_dssp EEEEEEC
T ss_pred eEEEEEc
No 10
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=2.48 E-value=5.9e+02 Score=20.15 Aligned_cols=7 Identities=43% Similarity=1.255 Sum_probs=0.0
Q ss_pred eeEEeeC
Q psy6898 105 LVIYRFH 111 (111)
Q Consensus 105 ~~~~r~~ 111 (111)
+++||||
T Consensus 167 v~iy~F~ 173 (635)
T 4eho_A 167 VMVYRFD 173 (635)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Done!