Query psy6898
Match_columns 111
No_of_seqs 115 out of 1285
Neff 7.3
Searched_HMMs 13730
Date Fri Aug 16 21:18:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6898.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6898hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xnta_ b.18.1.8 (A:) N-termin 5.0 1E+02 0.0074 19.0 0.8 10 102-111 141-150 (151)
2 d2o9ca1 d.110.2.1 (A:135-321) 3.2 2.1E+02 0.016 17.2 1.3 8 104-111 38-45 (187)
3 d3c2wa1 d.110.2.1 (A:118-309) 2.9 2.4E+02 0.018 16.8 1.3 7 105-111 43-49 (192)
4 d1tx2a_ c.1.21.1 (A:) Dihydrop 2.9 2.2E+02 0.016 18.6 1.1 12 100-111 244-255 (273)
5 d2oola1 d.110.2.1 (A:140-333) 2.8 2.5E+02 0.019 16.7 1.3 8 104-111 42-49 (194)
6 d1eyea_ c.1.21.1 (A:) Dihydrop 2.7 2.4E+02 0.017 18.3 1.1 12 100-111 240-251 (270)
7 d1ad1a_ c.1.21.1 (A:) Dihydrop 2.3 2.8E+02 0.02 18.0 1.0 12 100-111 229-240 (264)
8 d1nmpa_ c.135.1.1 (A:) Hypothe 2.2 4.1E+02 0.03 16.5 1.8 16 96-111 82-97 (247)
9 d1o7fa1 a.4.5.31 (A:180-321) R 2.1 2.6E+02 0.019 16.4 0.5 10 101-110 83-92 (142)
10 d1ajza_ c.1.21.1 (A:) Dihydrop 2.0 3.3E+02 0.024 17.9 1.1 12 100-111 246-257 (282)
No 1
>d1xnta_ b.18.1.8 (A:) N-terminal domain of xrcc1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.02 E-value=1e+02 Score=19.00 Aligned_cols=10 Identities=50% Similarity=0.840 Sum_probs=6.0
Q ss_pred hcceeEEeeC
Q psy6898 102 AAGLVIYRFH 111 (111)
Q Consensus 102 ~~g~~~~r~~ 111 (111)
..||.|.|||
T Consensus 141 ~yGLsFv~~h 150 (151)
T d1xnta_ 141 PFGLSFVRFH 150 (151)
T ss_dssp CCEEEEEEEE
T ss_pred ccceEEEEEe
Confidence 3466666665
No 2
>d2o9ca1 d.110.2.1 (A:135-321) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=3.24 E-value=2.1e+02 Score=17.25 Aligned_cols=8 Identities=25% Similarity=0.912 Sum_probs=5.7
Q ss_pred ceeEEeeC
Q psy6898 104 GLVIYRFH 111 (111)
Q Consensus 104 g~~~~r~~ 111 (111)
=+++|||+
T Consensus 38 RV~IYrf~ 45 (187)
T d2o9ca1 38 RVMLYKFA 45 (187)
T ss_dssp EEEEEEEC
T ss_pred EeEEEEEC
Confidence 45788885
No 3
>d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.92 E-value=2.4e+02 Score=16.85 Aligned_cols=7 Identities=43% Similarity=1.080 Sum_probs=4.8
Q ss_pred eeEEeeC
Q psy6898 105 LVIYRFH 111 (111)
Q Consensus 105 ~~~~r~~ 111 (111)
+++|||+
T Consensus 43 V~IYqf~ 49 (192)
T d3c2wa1 43 VMAYRFR 49 (192)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 5678875
No 4
>d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]}
Probab=2.86 E-value=2.2e+02 Score=18.64 Aligned_cols=12 Identities=33% Similarity=0.501 Sum_probs=8.9
Q ss_pred hhhcceeEEeeC
Q psy6898 100 AIAAGLVIYRFH 111 (111)
Q Consensus 100 ~~~~g~~~~r~~ 111 (111)
++..|..++|+|
T Consensus 244 a~~~Ga~ilRvH 255 (273)
T d1tx2a_ 244 GIEKGCEFVRVH 255 (273)
T ss_dssp HHHTTCSEEEES
T ss_pred HHHCCCCEEEeC
Confidence 455688888888
No 5
>d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=2.80 E-value=2.5e+02 Score=16.73 Aligned_cols=8 Identities=25% Similarity=0.779 Sum_probs=5.4
Q ss_pred ceeEEeeC
Q psy6898 104 GLVIYRFH 111 (111)
Q Consensus 104 g~~~~r~~ 111 (111)
=++||||+
T Consensus 42 Rv~Iy~f~ 49 (194)
T d2oola1 42 RIKVYQFA 49 (194)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEc
Confidence 35678875
No 6
>d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.70 E-value=2.4e+02 Score=18.33 Aligned_cols=12 Identities=33% Similarity=0.213 Sum_probs=8.9
Q ss_pred hhhcceeEEeeC
Q psy6898 100 AIAAGLVIYRFH 111 (111)
Q Consensus 100 ~~~~g~~~~r~~ 111 (111)
++..|..++|+|
T Consensus 240 a~~~Ga~iiRvH 251 (270)
T d1eyea_ 240 AALHGAWGVRVH 251 (270)
T ss_dssp HHHTTCSEEEES
T ss_pred HHHCCCCEEEeC
Confidence 444688888988
No 7
>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]}
Probab=2.26 E-value=2.8e+02 Score=18.02 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=8.9
Q ss_pred hhhcceeEEeeC
Q psy6898 100 AIAAGLVIYRFH 111 (111)
Q Consensus 100 ~~~~g~~~~r~~ 111 (111)
++..|..+.|+|
T Consensus 229 a~~~Ga~iiRvH 240 (264)
T d1ad1a_ 229 GIMKGVRAVRVH 240 (264)
T ss_dssp HHHHTCCEEEES
T ss_pred HHHCCCCEEEeC
Confidence 344588889988
No 8
>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli [TaxId: 562]}
Probab=2.18 E-value=4.1e+02 Score=16.53 Aligned_cols=16 Identities=19% Similarity=0.553 Sum_probs=0.0
Q ss_pred cHHHhhhcceeEEeeC
Q psy6898 96 SVQRAIAAGLVIYRFH 111 (111)
Q Consensus 96 ~~~~~~~~g~~~~r~~ 111 (111)
.+...+...+.+|++|
T Consensus 82 ~i~~lik~~I~vy~~H 97 (247)
T d1nmpa_ 82 RLKTLLANDINLYGWH 97 (247)
T ss_dssp HHHHHHHTTCEEEECC
T ss_pred HHHHHHHCCcceEEcc
No 9
>d1o7fa1 a.4.5.31 (A:180-321) Regulatory domain of epac2, domain 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.09 E-value=2.6e+02 Score=16.35 Aligned_cols=10 Identities=30% Similarity=0.723 Sum_probs=0.0
Q ss_pred hhcceeEEee
Q psy6898 101 IAAGLVIYRF 110 (111)
Q Consensus 101 ~~~g~~~~r~ 110 (111)
|..+..+|||
T Consensus 83 F~D~~~lYrF 92 (142)
T d1o7fa1 83 FQDKYLFYRF 92 (142)
T ss_dssp CCSSSCEEEE
T ss_pred EecCCEEEEE
No 10
>d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]}
Probab=2.03 E-value=3.3e+02 Score=17.88 Aligned_cols=12 Identities=42% Similarity=0.506 Sum_probs=0.0
Q ss_pred hhhcceeEEeeC
Q psy6898 100 AIAAGLVIYRFH 111 (111)
Q Consensus 100 ~~~~g~~~~r~~ 111 (111)
++..|..+.|+|
T Consensus 246 a~~~Ga~iiRVH 257 (282)
T d1ajza_ 246 AAMQGAHIIRVH 257 (282)
T ss_dssp HHHTTCSEEEES
T ss_pred HHHCCCCEEEeC
Done!