RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6898
         (111 letters)



>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit
           methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 284

 Score = 28.1 bits (61), Expect = 0.19
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 38  GLPGEPGLDGIPGRNGMDG 56
           G P +PG   +PG    DG
Sbjct: 258 GTPEQPGKQNLPGAEEGDG 276


>d1vpya_ c.1.32.1 (A:) Hypothetical protein EF0366 {Enterococcus
           faecalis [TaxId: 1351]}
          Length = 269

 Score = 25.7 bits (56), Expect = 1.4
 Identities = 7/28 (25%), Positives = 10/28 (35%)

Query: 84  ADTKSFSDGVLPSVQRAIAAGLVIYRFH 111
            D        +P         LV++RFH
Sbjct: 171 VDEPQIPTNPVPFYPYVTNPNLVLFRFH 198


>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
          {Escherichia coli [TaxId: 562]}
          Length = 327

 Score = 23.7 bits (50), Expect = 7.6
 Identities = 4/16 (25%), Positives = 9/16 (56%)

Query: 15 DRRDIGRAISTVISGR 30
          +R  + +A++ V S  
Sbjct: 18 ERATLAQAMTLVESRH 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.144    0.434 

Gapped
Lambda     K      H
   0.267   0.0464    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 435,334
Number of extensions: 19610
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 11
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.5 bits)