Query psy69
Match_columns 157
No_of_seqs 160 out of 1298
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 21:19:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy69.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/69hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01299 synapt_SV2 synaptic 99.8 9.8E-18 2.1E-22 135.7 14.1 140 16-156 196-374 (742)
2 TIGR00887 2A0109 phosphate:H+ 99.7 1.7E-16 3.6E-21 124.2 14.2 111 17-128 51-167 (502)
3 KOG0569|consensus 99.7 1.3E-16 2.8E-21 123.1 13.2 130 26-155 63-224 (485)
4 TIGR00898 2A0119 cation transp 99.7 6.7E-17 1.4E-21 126.3 11.8 139 15-154 117-281 (505)
5 TIGR02332 HpaX 4-hydroxyphenyl 99.7 3.5E-16 7.5E-21 119.8 14.3 119 14-133 35-153 (412)
6 KOG0254|consensus 99.7 2.3E-16 5E-21 123.9 11.6 133 22-155 89-248 (513)
7 KOG0255|consensus 99.7 2.1E-16 4.5E-21 124.2 10.4 141 15-156 111-274 (521)
8 PRK09705 cynX putative cyanate 99.7 6.3E-16 1.4E-20 117.6 11.9 120 15-136 37-156 (393)
9 PRK10077 xylE D-xylose transpo 99.7 2.6E-15 5.6E-20 116.5 14.5 112 17-129 50-173 (479)
10 PRK03545 putative arabinose tr 99.7 2E-15 4.2E-20 114.6 12.9 120 15-135 37-156 (390)
11 PRK12307 putative sialic acid 99.7 2.6E-15 5.7E-20 114.9 13.5 119 15-134 46-164 (426)
12 PRK10213 nepI ribonucleoside t 99.7 3E-15 6.4E-20 114.1 13.7 121 15-136 48-168 (394)
13 TIGR00891 2A0112 putative sial 99.7 2.8E-15 6.2E-20 113.3 12.9 118 15-133 40-157 (405)
14 COG2814 AraJ Arabinose efflux 99.6 2.3E-15 4.9E-20 113.4 11.7 117 15-132 41-157 (394)
15 TIGR00893 2A0114 d-galactonate 99.6 3.9E-15 8.4E-20 111.6 12.4 119 14-133 21-139 (399)
16 TIGR00903 2A0129 major facilit 99.6 7.9E-15 1.7E-19 110.9 13.9 119 15-135 19-137 (368)
17 KOG1330|consensus 99.6 1.5E-16 3.3E-21 120.4 4.4 128 14-142 60-187 (493)
18 PF00083 Sugar_tr: Sugar (and 99.6 1.5E-18 3.3E-23 133.6 -6.9 135 21-156 45-211 (451)
19 PRK03633 putative MFS family t 99.6 1.1E-14 2.3E-19 110.3 14.1 128 7-137 28-155 (381)
20 PRK15403 multidrug efflux syst 99.6 1.2E-14 2.6E-19 111.3 13.6 118 15-133 44-161 (413)
21 TIGR00711 efflux_EmrB drug res 99.6 9.2E-15 2E-19 113.4 12.9 121 15-136 30-150 (485)
22 PRK11551 putative 3-hydroxyphe 99.6 2E-14 4.4E-19 109.4 14.3 116 15-131 43-158 (406)
23 PRK14995 methyl viologen resis 99.6 1.7E-14 3.7E-19 112.8 14.2 122 15-137 34-156 (495)
24 TIGR00710 efflux_Bcr_CflA drug 99.6 1.8E-14 3.9E-19 108.4 13.2 119 15-134 33-151 (385)
25 TIGR00900 2A0121 H+ Antiporter 99.6 1.8E-14 3.9E-19 107.3 13.0 117 17-134 29-150 (365)
26 PRK10091 MFS transport protein 99.6 2.1E-14 4.5E-19 108.8 12.8 116 15-131 31-146 (382)
27 PF07690 MFS_1: Major Facilita 99.6 1.2E-14 2.6E-19 107.9 11.1 121 15-136 25-145 (352)
28 PRK11663 regulatory protein Uh 99.6 2.4E-14 5.1E-19 110.3 13.0 115 16-131 52-166 (434)
29 TIGR00886 2A0108 nitrite extru 99.6 2.4E-14 5.2E-19 107.3 12.7 117 14-132 29-146 (366)
30 PRK03699 putative transporter; 99.6 1.8E-14 3.8E-19 109.6 11.8 117 15-132 35-151 (394)
31 TIGR00806 rfc RFC reduced fola 99.6 3.4E-14 7.4E-19 109.2 13.3 118 16-135 55-173 (511)
32 PRK10642 proline/glycine betai 99.6 1E-14 2.2E-19 114.0 10.6 101 29-129 63-171 (490)
33 PRK11102 bicyclomycin/multidru 99.6 5.5E-14 1.2E-18 105.9 13.7 117 16-133 20-136 (377)
34 TIGR00894 2A0114euk Na(+)-depe 99.6 4.2E-14 9.1E-19 109.6 13.0 121 16-137 70-192 (465)
35 PRK11195 lysophospholipid tran 99.6 4.9E-14 1.1E-18 107.4 13.0 114 16-133 32-145 (393)
36 PRK03893 putative sialic acid 99.6 7.3E-14 1.6E-18 108.9 14.1 118 15-133 48-165 (496)
37 TIGR00885 fucP L-fucose:H+ sym 99.6 6.2E-14 1.3E-18 107.4 13.3 122 14-136 30-154 (410)
38 PRK12382 putative transporter; 99.6 2.7E-14 5.9E-19 108.3 11.2 120 15-135 44-171 (392)
39 PRK10473 multidrug efflux syst 99.6 9.6E-14 2.1E-18 105.3 14.0 117 15-132 31-147 (392)
40 PRK10406 alpha-ketoglutarate t 99.6 3.1E-14 6.8E-19 109.5 11.5 105 26-130 66-178 (432)
41 PRK10504 putative transporter; 99.6 8.4E-14 1.8E-18 108.0 13.8 120 16-136 39-158 (471)
42 PRK10133 L-fucose transporter; 99.6 6.8E-14 1.5E-18 108.1 13.2 120 14-134 53-175 (438)
43 TIGR00895 2A0115 benzoate tran 99.6 6.3E-14 1.4E-18 105.6 12.7 120 15-135 45-164 (398)
44 PRK05122 major facilitator sup 99.6 2.8E-14 6.1E-19 108.4 10.4 118 15-133 44-169 (399)
45 TIGR00890 2A0111 Oxalate/Forma 99.6 4E-14 8.7E-19 105.8 11.0 110 15-126 31-140 (377)
46 cd06174 MFS The Major Facilita 99.6 4.8E-14 1E-18 104.3 11.2 120 17-137 29-148 (352)
47 PRK15402 multidrug efflux syst 99.6 1.6E-13 3.6E-18 104.5 14.1 116 15-131 41-156 (406)
48 KOG2615|consensus 99.6 1.2E-14 2.6E-19 108.0 7.3 116 20-137 66-181 (451)
49 PRK11646 multidrug resistance 99.6 1.9E-13 4.1E-18 104.3 14.0 121 15-136 39-159 (400)
50 TIGR00881 2A0104 phosphoglycer 99.5 1.2E-14 2.6E-19 108.7 7.2 114 15-129 23-136 (379)
51 PRK09556 uhpT sugar phosphate 99.5 1E-14 2.2E-19 113.3 6.6 113 15-128 57-174 (467)
52 PRK10054 putative transporter; 99.5 2.5E-13 5.4E-18 103.5 13.8 120 15-135 36-155 (395)
53 PRK09952 shikimate transporter 99.5 6E-14 1.3E-18 108.3 10.4 100 31-130 72-179 (438)
54 PRK15034 nitrate/nitrite trans 99.5 3.5E-13 7.7E-18 104.2 14.4 118 15-134 63-185 (462)
55 PLN00028 nitrate transmembrane 99.5 2E-13 4.3E-18 106.4 13.0 114 15-130 64-177 (476)
56 TIGR00879 SP MFS transporter, 99.5 1.4E-13 3.1E-18 105.7 11.8 113 19-132 68-183 (481)
57 PRK11652 emrD multidrug resist 99.5 4.2E-13 9E-18 101.9 13.9 116 15-131 36-151 (394)
58 PRK11043 putative transporter; 99.5 3.4E-13 7.4E-18 102.6 13.2 117 15-132 34-150 (401)
59 PRK15075 citrate-proton sympor 99.5 9.9E-14 2.1E-18 106.8 9.5 99 33-131 66-172 (434)
60 TIGR00896 CynX cyanate transpo 99.5 3.9E-13 8.4E-18 100.8 11.9 119 14-135 27-145 (355)
61 TIGR00897 2A0118 polyol permea 99.5 1.3E-12 2.7E-17 99.8 13.5 117 16-133 42-163 (402)
62 TIGR00880 2_A_01_02 Multidrug 99.4 7.2E-13 1.6E-17 85.8 8.3 107 31-137 6-112 (141)
63 PRK11273 glpT sn-glycerol-3-ph 99.4 2.3E-12 5E-17 99.8 12.5 107 18-125 59-169 (452)
64 TIGR00805 oat sodium-independe 99.4 4.4E-14 9.6E-19 113.5 3.0 122 15-137 61-233 (633)
65 TIGR00712 glpT glycerol-3-phos 99.4 6.7E-13 1.4E-17 102.4 9.4 112 17-129 56-171 (438)
66 KOG2532|consensus 99.4 1.3E-12 2.8E-17 101.4 10.5 123 14-137 65-189 (466)
67 TIGR01299 synapt_SV2 synaptic 99.4 6.9E-12 1.5E-16 102.1 14.6 111 26-136 598-708 (742)
68 KOG3764|consensus 99.4 7.4E-13 1.6E-17 99.1 8.3 121 15-136 99-220 (464)
69 TIGR00892 2A0113 monocarboxyla 99.4 4.9E-12 1.1E-16 98.1 12.7 115 15-131 47-162 (455)
70 TIGR00924 yjdL_sub1_fam amino 99.4 1.2E-12 2.7E-17 102.1 9.2 120 16-136 42-165 (475)
71 PRK10642 proline/glycine betai 99.4 7.2E-12 1.6E-16 98.0 13.4 138 17-156 281-454 (490)
72 TIGR00899 2A0120 sugar efflux 99.4 9.2E-12 2E-16 93.5 13.6 113 15-128 26-141 (375)
73 PRK10489 enterobactin exporter 99.4 3.9E-12 8.5E-17 97.4 10.9 116 17-133 47-167 (417)
74 PRK10207 dipeptide/tripeptide 99.4 2.3E-12 4.9E-17 100.9 9.7 120 16-136 44-167 (489)
75 PRK09874 drug efflux system pr 99.4 9.5E-12 2.1E-16 94.6 12.7 109 24-134 56-164 (408)
76 TIGR00883 2A0106 metabolite-pr 99.4 3.5E-12 7.6E-17 95.9 9.3 100 32-131 44-151 (394)
77 PRK08633 2-acyl-glycerophospho 99.4 6.5E-12 1.4E-16 106.6 11.3 116 20-136 45-163 (1146)
78 PTZ00207 hypothetical protein; 99.4 3E-11 6.4E-16 96.0 13.6 110 15-127 55-170 (591)
79 cd06174 MFS The Major Facilita 99.3 7.6E-11 1.7E-15 87.1 13.5 120 17-137 206-326 (352)
80 PRK11551 putative 3-hydroxyphe 99.3 7.7E-11 1.7E-15 89.7 13.0 120 17-137 250-369 (406)
81 TIGR00890 2A0111 Oxalate/Forma 99.3 8.4E-11 1.8E-15 87.9 12.8 120 17-137 235-356 (377)
82 TIGR00900 2A0121 H+ Antiporter 99.3 1.5E-10 3.3E-15 86.2 13.9 120 17-137 242-362 (365)
83 KOG0252|consensus 99.3 4.8E-12 1E-16 96.3 5.0 97 18-115 80-183 (538)
84 COG2223 NarK Nitrate/nitrite t 99.3 1.1E-11 2.3E-16 93.4 6.7 118 15-135 42-162 (417)
85 TIGR00891 2A0112 putative sial 99.3 1.1E-10 2.5E-15 88.2 11.8 124 16-140 268-392 (405)
86 TIGR00895 2A0115 benzoate tran 99.2 3.7E-10 8.1E-15 85.1 13.5 118 17-135 280-397 (398)
87 COG2271 UhpC Sugar phosphate p 99.2 1.3E-11 2.7E-16 93.2 5.3 117 15-132 57-173 (448)
88 PRK15462 dipeptide/tripeptide 99.2 8.8E-11 1.9E-15 91.8 10.1 120 16-136 39-162 (493)
89 TIGR00901 2A0125 AmpG-related 99.2 2.8E-10 6.1E-15 85.3 12.4 119 16-137 17-144 (356)
90 PRK15011 sugar efflux transpor 99.2 2E-10 4.4E-15 87.4 11.8 120 16-137 246-365 (393)
91 COG0738 FucP Fucose permease [ 99.2 1.5E-10 3.3E-15 87.0 10.4 122 15-137 41-165 (422)
92 PRK06814 acylglycerophosphoeth 99.2 1.2E-10 2.6E-15 99.2 11.2 114 22-136 52-168 (1140)
93 PRK09584 tppB putative tripept 99.2 1.7E-10 3.6E-15 90.7 10.8 121 15-136 50-174 (500)
94 TIGR00889 2A0110 nucleoside tr 99.2 7.8E-10 1.7E-14 85.1 13.1 117 21-138 250-371 (418)
95 PRK12382 putative transporter; 99.2 8E-10 1.7E-14 83.9 12.8 112 26-137 252-363 (392)
96 PRK10489 enterobactin exporter 99.2 6.4E-10 1.4E-14 85.2 12.3 120 17-137 254-373 (417)
97 PRK09556 uhpT sugar phosphate 99.2 1.2E-09 2.6E-14 85.1 13.7 122 15-137 287-411 (467)
98 TIGR00902 2A0127 phenyl propri 99.2 1E-09 2.2E-14 83.3 12.8 120 17-138 235-355 (382)
99 TIGR00899 2A0120 sugar efflux 99.2 1.3E-09 2.7E-14 81.9 13.2 120 16-137 229-348 (375)
100 PRK05122 major facilitator sup 99.2 1.4E-09 2.9E-14 82.8 13.2 112 26-137 252-363 (399)
101 KOG0253|consensus 99.2 6.6E-11 1.4E-15 88.3 5.7 135 15-152 106-266 (528)
102 PRK09528 lacY galactoside perm 99.1 5.5E-10 1.2E-14 85.7 10.4 119 18-137 258-377 (420)
103 PRK11902 ampG muropeptide tran 99.1 1.9E-09 4.2E-14 82.3 13.2 112 17-131 29-149 (402)
104 KOG2533|consensus 99.1 1.6E-09 3.5E-14 84.7 11.8 122 13-135 72-193 (495)
105 TIGR00883 2A0106 metabolite-pr 99.1 5.5E-10 1.2E-14 84.0 9.0 124 16-140 249-377 (394)
106 TIGR00711 efflux_EmrB drug res 99.1 2.3E-09 4.9E-14 83.4 12.6 121 16-137 285-409 (485)
107 PRK14995 methyl viologen resis 99.1 3E-09 6.6E-14 83.4 12.8 119 17-136 290-411 (495)
108 PRK09952 shikimate transporter 99.1 5E-09 1.1E-13 81.0 13.1 120 17-137 281-405 (438)
109 PRK03893 putative sialic acid 99.1 2.1E-09 4.6E-14 83.9 11.0 121 16-137 305-427 (496)
110 PRK11010 ampG muropeptide tran 99.1 7.5E-09 1.6E-13 81.3 13.6 114 17-133 42-164 (491)
111 PF05977 MFS_3: Transmembrane 99.1 3.6E-09 7.9E-14 83.5 11.8 120 15-135 247-366 (524)
112 PRK15011 sugar efflux transpor 99.0 9.3E-09 2E-13 78.3 13.7 116 14-131 43-162 (393)
113 TIGR00893 2A0114 d-galactonate 99.0 5.5E-09 1.2E-13 78.3 12.0 122 16-139 245-374 (399)
114 PRK03633 putative MFS family t 99.0 8.6E-09 1.9E-13 78.2 12.5 118 17-138 230-347 (381)
115 PRK03545 putative arabinose tr 99.0 9E-09 2E-13 78.2 12.3 119 16-137 235-354 (390)
116 PRK09874 drug efflux system pr 99.0 4E-09 8.7E-14 80.2 10.4 112 26-137 261-372 (408)
117 TIGR00882 2A0105 oligosacchari 99.0 5.7E-09 1.2E-13 79.4 11.1 90 16-106 32-129 (396)
118 TIGR00892 2A0113 monocarboxyla 99.0 1E-08 2.2E-13 79.7 12.6 122 17-139 271-396 (455)
119 PRK03699 putative transporter; 99.0 6.1E-09 1.3E-13 79.3 11.1 120 16-137 235-354 (394)
120 TIGR00901 2A0125 AmpG-related 99.0 6.2E-09 1.3E-13 78.0 10.8 104 17-121 239-354 (356)
121 PRK11128 putative 3-phenylprop 99.0 1.6E-08 3.6E-13 76.7 12.9 121 16-138 234-355 (382)
122 PRK15075 citrate-proton sympor 99.0 5E-09 1.1E-13 80.8 10.2 121 17-138 269-394 (434)
123 PF05977 MFS_3: Transmembrane 99.0 1.5E-08 3.2E-13 80.1 13.0 112 19-131 42-158 (524)
124 PRK12307 putative sialic acid 99.0 2.3E-08 5E-13 76.7 12.9 119 17-136 261-381 (426)
125 PF11700 ATG22: Vacuole efflux 99.0 2E-08 4.3E-13 78.6 12.7 124 15-139 310-443 (477)
126 TIGR00896 CynX cyanate transpo 99.0 2.8E-08 6.1E-13 74.5 13.1 123 17-141 227-351 (355)
127 PRK10504 putative transporter; 99.0 2.4E-08 5.3E-13 77.6 13.1 120 16-136 291-413 (471)
128 TIGR01301 GPH_sucrose GPH fami 99.0 9.2E-09 2E-13 80.3 10.6 117 16-133 33-173 (477)
129 PF06609 TRI12: Fungal trichot 99.0 8.1E-09 1.8E-13 82.2 10.3 89 26-115 81-169 (599)
130 PRK11128 putative 3-phenylprop 99.0 1.3E-08 2.9E-13 77.1 11.2 112 17-133 34-149 (382)
131 TIGR00902 2A0127 phenyl propri 98.9 1.8E-08 3.9E-13 76.5 11.7 117 16-135 33-151 (382)
132 TIGR02332 HpaX 4-hydroxyphenyl 98.9 9.5E-09 2.1E-13 78.9 10.3 134 8-142 265-399 (412)
133 COG2270 Permeases of the major 98.9 7.3E-09 1.6E-13 78.5 9.1 123 16-139 282-404 (438)
134 TIGR00792 gph sugar (Glycoside 98.9 4.9E-08 1.1E-12 75.0 13.5 117 20-137 255-379 (437)
135 PF07690 MFS_1: Major Facilita 98.9 1E-08 2.2E-13 76.1 9.1 114 15-129 235-352 (352)
136 TIGR00897 2A0118 polyol permea 98.9 5.2E-08 1.1E-12 74.5 13.1 120 17-139 252-377 (402)
137 TIGR00792 gph sugar (Glycoside 98.9 7.6E-09 1.7E-13 79.5 8.5 113 15-128 28-152 (437)
138 TIGR00898 2A0119 cation transp 98.9 3.5E-08 7.6E-13 77.4 12.2 103 31-133 363-467 (505)
139 TIGR00889 2A0110 nucleoside tr 98.9 2.4E-08 5.2E-13 76.9 10.5 85 15-100 31-116 (418)
140 PRK15402 multidrug efflux syst 98.9 6.7E-08 1.4E-12 73.8 12.9 123 16-140 245-372 (406)
141 TIGR00879 SP MFS transporter, 98.9 2.7E-08 5.9E-13 76.5 10.5 120 17-137 314-444 (481)
142 PRK10077 xylE D-xylose transpo 98.9 3.8E-08 8.3E-13 76.5 11.3 118 17-135 301-423 (479)
143 PRK09705 cynX putative cyanate 98.9 7.9E-08 1.7E-12 73.3 12.6 120 17-139 235-356 (393)
144 PRK08633 2-acyl-glycerophospho 98.9 2.3E-08 5E-13 85.3 10.5 114 17-131 263-377 (1146)
145 PRK09528 lacY galactoside perm 98.8 5.7E-08 1.2E-12 74.6 11.4 50 16-66 40-89 (420)
146 PRK10406 alpha-ketoglutarate t 98.8 7.1E-08 1.5E-12 74.4 11.8 116 17-133 274-394 (432)
147 TIGR00882 2A0105 oligosacchari 98.8 3.7E-08 8.1E-13 75.0 9.9 119 18-137 250-369 (396)
148 COG2807 CynX Cyanate permease 98.8 9.2E-08 2E-12 71.4 11.4 123 14-139 39-161 (395)
149 TIGR00881 2A0104 phosphoglycer 98.8 7.5E-08 1.6E-12 72.0 11.0 121 16-137 246-371 (379)
150 TIGR00710 efflux_Bcr_CflA drug 98.8 1.9E-07 4.2E-12 70.3 12.2 113 16-130 236-354 (385)
151 PRK09848 glucuronide transport 98.8 5.1E-07 1.1E-11 70.0 14.7 120 16-136 258-386 (448)
152 PRK11195 lysophospholipid tran 98.8 1.3E-07 2.9E-12 72.1 11.1 119 15-135 234-353 (393)
153 KOG2504|consensus 98.8 2.8E-08 6E-13 78.3 7.5 114 16-131 75-189 (509)
154 PRK10213 nepI ribonucleoside t 98.7 3.6E-07 7.9E-12 69.8 12.7 119 16-137 246-365 (394)
155 PRK11663 regulatory protein Uh 98.7 3.8E-07 8.3E-12 70.5 12.9 122 15-137 272-398 (434)
156 TIGR01272 gluP glucose/galacto 98.7 5.8E-07 1.3E-11 66.7 12.9 118 16-137 172-289 (310)
157 PRK10133 L-fucose transporter; 98.7 1.4E-07 3E-12 73.2 9.9 120 14-137 287-406 (438)
158 TIGR00887 2A0109 phosphate:H+ 98.7 2E-07 4.3E-12 73.4 10.7 107 31-137 343-453 (502)
159 PF05631 DUF791: Protein of un 98.7 5.1E-07 1.1E-11 67.5 12.2 86 15-102 62-147 (354)
160 PF05978 UNC-93: Ion channel r 98.7 7.7E-07 1.7E-11 59.6 11.7 116 18-135 33-148 (156)
161 PRK11273 glpT sn-glycerol-3-ph 98.7 6.9E-07 1.5E-11 69.4 13.0 120 17-137 284-409 (452)
162 PRK11646 multidrug resistance 98.7 1.9E-07 4.1E-12 71.5 9.7 118 20-138 241-359 (400)
163 PRK06814 acylglycerophosphoeth 98.7 1.5E-07 3.2E-12 80.5 9.9 120 16-136 255-394 (1140)
164 COG2271 UhpC Sugar phosphate p 98.7 3.3E-07 7.1E-12 69.7 10.6 122 16-138 282-409 (448)
165 TIGR02718 sider_RhtX_FptX side 98.7 7.4E-07 1.6E-11 67.8 12.7 120 17-137 238-365 (390)
166 COG3104 PTR2 Dipeptide/tripept 98.7 2.2E-08 4.7E-13 77.4 4.2 119 17-136 56-179 (498)
167 PRK10091 MFS transport protein 98.7 5.5E-07 1.2E-11 68.4 11.5 119 17-138 230-350 (382)
168 PRK11010 ampG muropeptide tran 98.6 7.2E-07 1.6E-11 70.2 11.9 115 16-131 252-371 (491)
169 KOG2325|consensus 98.6 2.6E-07 5.7E-12 71.8 8.4 119 17-137 66-190 (488)
170 PRK09669 putative symporter Ya 98.6 3.9E-07 8.5E-12 70.6 9.3 115 15-130 38-164 (444)
171 COG0477 ProP Permeases of the 98.6 2.2E-06 4.7E-11 61.4 12.3 113 22-135 39-155 (338)
172 KOG2504|consensus 98.6 9.5E-07 2.1E-11 69.7 10.6 127 16-143 327-455 (509)
173 PF13347 MFS_2: MFS/sugar tran 98.6 4.6E-07 9.9E-12 69.9 8.7 114 22-136 260-382 (428)
174 PRK10054 putative transporter; 98.6 3.7E-07 8.1E-12 69.8 8.0 120 17-138 239-359 (395)
175 COG2814 AraJ Arabinose efflux 98.5 1.4E-06 2.9E-11 66.4 10.7 120 15-137 240-360 (394)
176 PF06813 Nodulin-like: Nodulin 98.5 1.4E-06 3E-11 62.7 10.2 108 14-124 29-143 (250)
177 PRK11102 bicyclomycin/multidru 98.5 3.2E-06 6.9E-11 63.7 12.5 114 16-131 224-342 (377)
178 PLN00028 nitrate transmembrane 98.5 4.8E-07 1E-11 70.8 8.0 114 16-131 282-402 (476)
179 PRK10429 melibiose:sodium symp 98.5 5E-06 1.1E-10 65.1 13.6 116 21-137 265-392 (473)
180 PRK11043 putative transporter; 98.5 3.6E-06 7.9E-11 64.1 12.6 119 17-137 233-356 (401)
181 PF03825 Nuc_H_symport: Nucleo 98.5 2.8E-06 6.2E-11 65.2 11.7 119 19-138 240-364 (400)
182 TIGR00712 glpT glycerol-3-phos 98.5 1.4E-06 3E-11 67.4 10.0 120 17-137 282-407 (438)
183 TIGR00903 2A0129 major facilit 98.5 2.2E-06 4.8E-11 65.1 10.8 123 7-136 214-340 (368)
184 TIGR00886 2A0108 nitrite extru 98.5 5.6E-07 1.2E-11 67.4 7.4 105 16-122 255-363 (366)
185 PRK10429 melibiose:sodium symp 98.5 1.3E-06 2.8E-11 68.3 9.5 109 15-124 35-155 (473)
186 PRK09669 putative symporter Ya 98.5 6.8E-06 1.5E-10 63.7 13.4 112 26-137 267-387 (444)
187 KOG0253|consensus 98.5 1.4E-07 3E-12 71.0 3.7 95 34-132 392-490 (528)
188 PRK10473 multidrug efflux syst 98.5 2.9E-06 6.3E-11 64.5 11.0 110 16-128 233-343 (392)
189 KOG0569|consensus 98.5 3.4E-06 7.5E-11 65.9 11.3 104 17-121 300-413 (485)
190 KOG4686|consensus 98.4 1.7E-06 3.6E-11 63.3 8.5 129 11-142 289-418 (459)
191 COG2223 NarK Nitrate/nitrite t 98.4 6.5E-07 1.4E-11 68.0 6.3 116 14-131 246-368 (417)
192 TIGR00885 fucP L-fucose:H+ sym 98.4 6.7E-06 1.5E-10 63.3 11.0 117 18-138 265-381 (410)
193 PRK15034 nitrate/nitrite trans 98.4 1.1E-05 2.4E-10 63.0 12.1 79 29-107 292-376 (462)
194 PRK11652 emrD multidrug resist 98.4 2.4E-05 5.2E-10 59.5 13.9 119 17-137 238-359 (394)
195 PRK09584 tppB putative tripept 98.4 1.3E-05 2.7E-10 63.4 12.6 108 26-133 319-439 (500)
196 PRK10207 dipeptide/tripeptide 98.4 2E-05 4.3E-10 62.1 13.4 110 26-135 312-438 (489)
197 PF01306 LacY_symp: LacY proto 98.3 1E-05 2.2E-10 62.1 11.1 116 19-135 256-372 (412)
198 TIGR00788 fbt folate/biopterin 98.3 6.3E-06 1.4E-10 64.6 9.0 94 15-111 54-154 (468)
199 PRK11902 ampG muropeptide tran 98.3 1.8E-05 3.8E-10 60.6 11.3 100 15-115 238-346 (402)
200 COG2807 CynX Cyanate permease 98.3 3.7E-05 7.9E-10 57.8 12.0 126 16-143 237-364 (395)
201 PF03825 Nuc_H_symport: Nucleo 98.3 1.4E-05 3E-10 61.5 10.2 90 16-106 31-121 (400)
202 TIGR00924 yjdL_sub1_fam amino 98.2 5.4E-05 1.2E-09 59.4 13.2 110 26-135 315-440 (475)
203 PF13347 MFS_2: MFS/sugar tran 98.2 1.6E-06 3.5E-11 66.9 4.0 121 15-136 30-164 (428)
204 TIGR00894 2A0114euk Na(+)-depe 98.2 5.2E-05 1.1E-09 59.0 12.4 121 16-138 291-422 (465)
205 PRK11462 putative transporter; 98.1 5.7E-05 1.2E-09 59.1 11.8 116 15-131 38-165 (460)
206 PRK11462 putative transporter; 98.1 0.00015 3.3E-09 56.7 13.7 111 26-136 266-385 (460)
207 TIGR02718 sider_RhtX_FptX side 98.1 6.5E-05 1.4E-09 57.2 11.4 112 17-129 31-150 (390)
208 TIGR00788 fbt folate/biopterin 98.1 5.6E-06 1.2E-10 64.8 5.6 122 14-136 280-411 (468)
209 COG2211 MelB Na+/melibiose sym 98.1 0.00012 2.5E-09 57.1 12.1 119 18-137 268-395 (467)
210 PF03209 PUCC: PUCC protein; 98.1 9.4E-05 2E-09 56.4 11.2 122 15-137 237-362 (403)
211 PRK09848 glucuronide transport 98.0 5.4E-05 1.2E-09 58.8 9.7 104 15-119 37-153 (448)
212 KOG3762|consensus 98.0 6.9E-06 1.5E-10 64.4 4.3 111 26-136 409-520 (618)
213 PF06779 DUF1228: Protein of u 98.0 5.3E-05 1.1E-09 45.3 6.8 69 8-79 15-83 (85)
214 PF01306 LacY_symp: LacY proto 98.0 9.3E-05 2E-09 56.9 9.3 91 17-108 38-136 (412)
215 PF03137 OATP: Organic Anion T 97.9 1.6E-06 3.5E-11 68.9 -0.4 149 3-154 21-227 (539)
216 PF12832 MFS_1_like: MFS_1 lik 97.8 0.0001 2.3E-09 43.4 6.0 46 16-62 29-74 (77)
217 TIGR00926 2A1704 Peptide:H+ sy 97.8 0.00059 1.3E-08 55.7 12.2 118 17-135 18-147 (654)
218 COG2211 MelB Na+/melibiose sym 97.8 0.00018 4E-09 56.1 8.9 122 13-135 39-172 (467)
219 PF03209 PUCC: PUCC protein; 97.8 0.00059 1.3E-08 52.2 11.4 120 16-137 9-150 (403)
220 KOG2816|consensus 97.7 0.00028 6E-09 55.3 8.7 100 31-135 70-171 (463)
221 KOG4686|consensus 97.7 1.9E-07 4.1E-12 68.1 -8.5 121 14-135 71-195 (459)
222 KOG2563|consensus 97.6 0.00041 8.8E-09 53.7 8.3 119 20-139 77-203 (480)
223 KOG3764|consensus 97.6 7.3E-05 1.6E-09 57.0 4.0 116 20-136 304-427 (464)
224 KOG0255|consensus 97.6 0.0034 7.4E-08 49.7 13.2 98 35-132 362-462 (521)
225 PRK15462 dipeptide/tripeptide 97.5 0.0053 1.2E-07 48.6 13.6 111 26-136 311-438 (493)
226 TIGR01301 GPH_sucrose GPH fami 97.5 0.002 4.4E-08 50.8 11.1 111 26-136 308-442 (477)
227 KOG0254|consensus 97.5 0.0019 4.1E-08 51.2 11.0 87 29-116 335-435 (513)
228 PF11700 ATG22: Vacuole efflux 97.5 0.0036 7.8E-08 49.4 11.9 85 26-110 73-160 (477)
229 PF01770 Folate_carrier: Reduc 97.3 0.016 3.4E-07 44.8 13.5 105 10-115 28-132 (412)
230 PF03092 BT1: BT1 family; Int 97.3 0.005 1.1E-07 48.0 10.9 122 12-135 15-147 (433)
231 KOG2816|consensus 97.2 0.0046 9.9E-08 48.6 9.5 121 15-137 270-391 (463)
232 PF02487 CLN3: CLN3 protein; 97.1 0.0056 1.2E-07 47.1 9.4 111 22-137 281-396 (402)
233 PF06609 TRI12: Fungal trichot 97.1 0.0037 8E-08 50.5 8.7 109 23-132 350-461 (599)
234 KOG3098|consensus 97.1 0.0038 8.3E-08 48.8 8.3 109 27-136 54-162 (461)
235 PRK15403 multidrug efflux syst 97.0 0.011 2.5E-07 45.5 10.4 112 15-128 247-363 (413)
236 COG0738 FucP Fucose permease [ 96.9 0.0065 1.4E-07 46.6 7.5 88 17-106 267-354 (422)
237 KOG2615|consensus 96.8 0.0061 1.3E-07 46.6 6.9 122 14-136 289-412 (451)
238 TIGR01272 gluP glucose/galacto 96.8 0.0045 9.8E-08 46.0 6.3 65 72-136 6-70 (310)
239 PF00083 Sugar_tr: Sugar (and 96.8 2.8E-06 6E-11 65.7 -11.5 105 32-136 295-409 (451)
240 KOG2533|consensus 96.6 0.011 2.5E-07 46.8 7.5 99 16-115 303-406 (495)
241 KOG2532|consensus 96.6 0.024 5.1E-07 44.7 9.1 115 16-137 288-418 (466)
242 COG3104 PTR2 Dipeptide/tripept 96.5 0.11 2.4E-06 41.1 12.2 108 26-133 327-451 (498)
243 KOG4332|consensus 96.5 0.003 6.4E-08 46.4 3.2 87 17-105 67-154 (454)
244 PF06963 FPN1: Ferroportin1 (F 96.3 0.23 4.9E-06 38.9 12.8 122 17-140 288-419 (432)
245 COG2270 Permeases of the major 96.2 0.019 4.1E-07 44.4 6.5 90 26-115 61-154 (438)
246 KOG3626|consensus 96.1 0.003 6.5E-08 51.9 1.5 139 15-154 125-320 (735)
247 PTZ00207 hypothetical protein; 96.0 0.12 2.5E-06 42.1 10.3 94 28-123 396-498 (591)
248 TIGR00769 AAA ADP/ATP carrier 96.0 0.37 8E-06 38.2 12.7 115 22-137 43-190 (472)
249 KOG3762|consensus 96.0 0.018 3.8E-07 46.0 5.3 59 14-73 38-97 (618)
250 KOG0252|consensus 95.9 0.0011 2.3E-08 51.7 -1.7 101 36-136 361-466 (538)
251 KOG0637|consensus 95.7 0.0051 1.1E-07 47.9 1.4 115 18-133 63-200 (498)
252 KOG3098|consensus 95.0 0.97 2.1E-05 35.8 11.8 96 29-125 285-401 (461)
253 TIGR00939 2a57 Equilibrative N 94.7 0.39 8.6E-06 37.7 9.1 106 26-132 310-428 (437)
254 KOG1479|consensus 93.7 0.46 9.9E-06 36.8 7.4 105 26-132 285-399 (406)
255 PF00854 PTR2: POT family; In 93.0 0.24 5.2E-06 37.7 5.1 83 54-136 2-96 (372)
256 PF01733 Nucleoside_tran: Nucl 91.9 0.061 1.3E-06 40.0 0.6 105 28-132 187-304 (309)
257 PF03092 BT1: BT1 family; Int 91.7 0.48 1E-05 37.0 5.4 116 18-134 251-376 (433)
258 KOG3574|consensus 91.6 1.3 2.8E-05 34.5 7.3 96 40-135 80-192 (510)
259 KOG1330|consensus 90.2 0.2 4.3E-06 39.4 2.0 112 26-137 286-411 (493)
260 KOG3880|consensus 89.4 1.6 3.4E-05 33.1 5.9 110 26-137 291-403 (409)
261 TIGR00805 oat sodium-independe 88.9 0.55 1.2E-05 38.6 3.7 54 15-69 359-415 (633)
262 PF02487 CLN3: CLN3 protein; 87.1 2.8 6.1E-05 32.6 6.3 80 27-107 63-142 (402)
263 KOG0637|consensus 85.3 4.8 0.0001 32.0 6.8 79 27-105 336-414 (498)
264 KOG2563|consensus 84.6 0.2 4.4E-06 39.3 -0.9 91 17-108 296-391 (480)
265 PF01770 Folate_carrier: Reduc 84.4 11 0.00024 29.5 8.4 81 26-106 288-370 (412)
266 PRK03612 spermidine synthase; 83.3 22 0.00049 28.7 12.7 31 18-49 46-76 (521)
267 KOG1237|consensus 81.8 6.6 0.00014 32.1 6.6 65 75-139 457-521 (571)
268 PF13000 Acatn: Acetyl-coenzym 79.2 6.1 0.00013 31.8 5.4 47 89-135 131-177 (544)
269 TIGR00806 rfc RFC reduced fola 78.8 11 0.00024 30.3 6.7 83 26-108 301-385 (511)
270 KOG3097|consensus 76.7 7.4 0.00016 29.8 5.0 75 33-108 68-142 (390)
271 KOG1237|consensus 76.5 21 0.00046 29.3 7.9 117 18-135 69-217 (571)
272 KOG4332|consensus 75.1 33 0.00072 25.9 9.6 97 26-122 285-390 (454)
273 PF07672 MFS_Mycoplasma: Mycop 74.9 17 0.00036 26.7 6.3 75 26-100 144-228 (267)
274 KOG3810|consensus 74.8 8.3 0.00018 29.8 4.8 115 11-126 30-144 (433)
275 TIGR00880 2_A_01_02 Multidrug 74.1 14 0.00031 22.6 5.4 29 27-55 91-119 (141)
276 COG5336 Uncharacterized protei 73.4 20 0.00043 22.5 6.4 36 26-61 45-81 (116)
277 COG1268 BioY Uncharacterized c 72.3 25 0.00054 24.3 6.4 24 31-54 90-113 (184)
278 KOG3810|consensus 61.0 55 0.0012 25.6 6.7 90 26-115 274-365 (433)
279 COG2233 UraA Xanthine/uracil p 58.9 86 0.0019 25.1 7.7 95 13-108 40-137 (451)
280 PF02632 BioY: BioY family; I 57.5 54 0.0012 21.8 7.6 24 31-54 61-84 (148)
281 PRK02237 hypothetical protein; 52.4 39 0.00086 21.2 4.0 49 22-71 56-104 (109)
282 PF02694 UPF0060: Uncharacteri 52.2 24 0.00052 22.1 3.1 49 22-71 54-102 (107)
283 PF13000 Acatn: Acetyl-coenzym 49.0 1.3E+02 0.0029 24.6 7.4 58 80-137 409-466 (544)
284 PF03219 TLC: TLC ATP/ADP tran 48.4 1.5E+02 0.0032 24.1 11.0 103 35-137 71-205 (491)
285 PF03137 OATP: Organic Anion T 47.8 6.1 0.00013 32.0 0.0 135 5-141 325-517 (539)
286 TIGR02230 ATPase_gene1 F0F1-AT 43.8 78 0.0017 19.6 6.4 29 31-59 51-79 (100)
287 PF13493 DUF4118: Domain of un 42.5 39 0.00084 20.4 3.1 20 34-53 86-105 (105)
288 COG1811 Uncharacterized membra 40.3 1.3E+02 0.0028 21.6 5.5 50 32-81 12-61 (228)
289 PF06237 DUF1011: Protein of u 36.1 1.1E+02 0.0023 19.0 6.5 64 4-69 20-83 (101)
290 PF09605 Trep_Strep: Hypotheti 36.1 1.4E+02 0.0031 20.5 7.4 36 35-70 40-75 (186)
291 PF11712 Vma12: Endoplasmic re 35.6 1.3E+02 0.0028 19.7 5.1 11 82-92 111-121 (142)
292 TIGR00801 ncs2 uracil-xanthine 33.6 2.4E+02 0.0051 22.2 9.9 31 19-50 34-64 (415)
293 PF04474 DUF554: Protein of un 33.5 1.3E+02 0.0029 21.6 4.9 59 32-91 11-69 (226)
294 PF06963 FPN1: Ferroportin1 (F 30.0 2E+02 0.0043 22.9 5.8 35 29-63 44-78 (432)
295 TIGR00939 2a57 Equilibrative N 28.2 3E+02 0.0066 21.8 7.5 27 76-102 106-132 (437)
296 PF11299 DUF3100: Protein of u 26.5 1.3E+02 0.0027 21.9 3.8 27 81-107 176-202 (241)
297 KOG3097|consensus 25.3 3.3E+02 0.0072 21.2 6.5 71 21-92 309-383 (390)
298 PF12911 OppC_N: N-terminal TM 24.6 1.2E+02 0.0026 15.9 3.6 27 45-71 7-33 (56)
299 TIGR02185 Trep_Strep conserved 24.5 2.4E+02 0.0053 19.4 6.8 30 35-64 42-71 (189)
300 PF11283 DUF3084: Protein of u 22.3 1.8E+02 0.0039 17.1 3.4 19 40-58 17-35 (79)
301 COG2119 Predicted membrane pro 21.8 2.9E+02 0.0063 19.3 5.1 35 33-67 144-178 (190)
302 PF04550 Phage_holin_2: Phage 21.7 2E+02 0.0043 17.4 4.8 34 77-110 32-65 (89)
303 PF00854 PTR2: POT family; In 21.5 2.1E+02 0.0045 21.7 4.5 48 26-73 75-122 (372)
304 KOG3626|consensus 20.4 69 0.0015 27.3 1.7 54 6-61 413-469 (735)
No 1
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.77 E-value=9.8e-18 Score=135.66 Aligned_cols=140 Identities=14% Similarity=0.080 Sum_probs=119.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
+++++..+. +++.+++.++.+++++++|+++||+|||+.++++.++..++.++..++++++.++++|++.|++.++..+
T Consensus 196 ~~gls~~~~-g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p 274 (742)
T TIGR01299 196 DLCIPDSGK-GMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIP 274 (742)
T ss_pred HhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 467888899 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------------------hhccc
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL---------------------------------------LPQLH 136 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~ 136 (157)
....++.|++|++.|++..+....+..+|..+++.+ ...+.
T Consensus 275 ~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~l 354 (742)
T TIGR01299 275 IVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFM 354 (742)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999998887766665554444321 12235
Q ss_pred cCCcccccCCCChhhhhhcc
Q psy69 137 RESSHILVTPGEASWIGKIS 156 (157)
Q Consensus 137 ~~~~~~~~~~~~~~w~~~~~ 156 (157)
||+|+|+..+++.+...+++
T Consensus 355 PESPrwL~~~gr~~eA~~iL 374 (742)
T TIGR01299 355 PESPRFFLENGKHDEAWMIL 374 (742)
T ss_pred CCCHHHHHHCCCHHHHHHHH
Confidence 99999998887766665543
No 2
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.72 E-value=1.7e-16 Score=124.25 Aligned_cols=111 Identities=16% Similarity=0.150 Sum_probs=96.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcC------HHHHHHHHHHHHhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADD------VLQLCIGRFITGVAI 90 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~G~~~ 90 (157)
.+.++.+. +++.+...++..+++++.|+++||+|||+.+.++.++..++..+..++++ ++.++++|++.|++.
T Consensus 51 ~~~~~~~~-~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~ 129 (502)
T TIGR00887 51 GPLPSSVS-AAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGI 129 (502)
T ss_pred ccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHH
Confidence 34566777 89999999999999999999999999999999999999888888887665 678899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFS 128 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~ 128 (157)
+...+..+.+++|.+|++.|++..+..+....+|..++
T Consensus 130 g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g 167 (502)
T TIGR00887 130 GGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAG 167 (502)
T ss_pred hhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987776665554443
No 3
>KOG0569|consensus
Probab=99.72 E-value=1.3e-16 Score=123.06 Aligned_cols=130 Identities=21% Similarity=0.285 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh---cCHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA---DDVLQLCIGRFITGVAIGKSELNHQLFMT 102 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~g~~~~~~~~~~~ 102 (157)
+.+.+++.+|.++|++..++++||+|||..+..+.++..++..++.++ +++..++++|++.|+..|......+.|++
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~ 142 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLT 142 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 677888999999999999999999999999999988888887776654 67889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HhhhccccCCcccccC-CCChhhhh
Q psy69 103 ALVVILMASLSAHSVNMSIGMCQGFSA----------------------------VLLPQLHRESSHILVT-PGEASWIG 153 (157)
Q Consensus 103 ~~~p~~~r~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~-~~~~~w~~ 153 (157)
|..|++.||.......++..+|..++. ++.-.+.||+|+|+.. +++++.++
T Consensus 143 E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~ 222 (485)
T KOG0569|consen 143 EISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEAR 222 (485)
T ss_pred hcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHH
Confidence 999999999999888888887766662 2223345999999988 78877776
Q ss_pred hc
Q psy69 154 KI 155 (157)
Q Consensus 154 ~~ 155 (157)
|-
T Consensus 223 ~s 224 (485)
T KOG0569|consen 223 KA 224 (485)
T ss_pred HH
Confidence 64
No 4
>TIGR00898 2A0119 cation transport protein.
Probab=99.72 E-value=6.7e-17 Score=126.28 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=117.5
Q ss_pred Cccccc---HHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhh
Q psy69 15 DRRIIY---KQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 15 ~~~~~~---~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g 91 (157)
++++++ +.+. ++..+.+.++..+++++.|+++||+|||+.++++.++..++.++..++++++.++++|++.|++.+
T Consensus 117 ~e~~l~c~~~~~~-~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~ 195 (505)
T TIGR00898 117 TEWDLVCEDAWKV-DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIG 195 (505)
T ss_pred EEecceechHHHH-HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcc
Confidence 347777 8888 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------hhccccCCcccccCCCC
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL-----------------------LPQLHRESSHILVTPGE 148 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~ 148 (157)
...+....++.|++|+++|++..+....+..+|..+++.+ ..++.||+|+|+..+++
T Consensus 196 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~ 275 (505)
T TIGR00898 196 GIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGR 275 (505)
T ss_pred chHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCC
Confidence 9999999999999999999998887766666554444322 22345899998877766
Q ss_pred hhhhhh
Q psy69 149 ASWIGK 154 (157)
Q Consensus 149 ~~w~~~ 154 (157)
.++..+
T Consensus 276 ~~~a~~ 281 (505)
T TIGR00898 276 IEEALK 281 (505)
T ss_pred HHHHHH
Confidence 555433
No 5
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.71 E-value=3.5e-16 Score=119.77 Aligned_cols=119 Identities=12% Similarity=0.058 Sum_probs=108.7
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
+++++.++.+. ++..+.+.++..+++++.|++.||+|||+.+..+.++..++..+..++++++.+++.|++.|++.+..
T Consensus 35 ~~~~~~s~~~~-g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 113 (412)
T TIGR02332 35 GKDLGLSATMF-GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGF 113 (412)
T ss_pred HhhcCCCHHHH-HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhH
Confidence 45688999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
.+....++.|++|+++|++..+.++....+|..+++.+.+
T Consensus 114 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~ 153 (412)
T TIGR02332 114 LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSG 153 (412)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999888887777766655543
No 6
>KOG0254|consensus
Probab=99.69 E-value=2.3e-16 Score=123.86 Aligned_cols=133 Identities=20% Similarity=0.298 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy69 22 QQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFM 101 (157)
Q Consensus 22 ~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~ 101 (157)
.+. +++.+...++..+++++.|+++|++|||+.++.+.+.+.++.++.++++|..++.++|++.|+|.|......+.|+
T Consensus 89 ~~~-s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~ 167 (513)
T KOG0254|consen 89 VRQ-GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYI 167 (513)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhH
Confidence 466 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------------------hccccCCcccccCCCChhhhhh
Q psy69 102 TALVVILMASLSAHSVNMSIGMCQGFSAVLL---------------------------PQLHRESSHILVTPGEASWIGK 154 (157)
Q Consensus 102 ~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~w~~~ 154 (157)
+|+.|++.|+...+..+....+|..++..+. ....||+|+|+.++++.++.++
T Consensus 168 sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~ 247 (513)
T KOG0254|consen 168 SEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKR 247 (513)
T ss_pred hhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHH
Confidence 9999999999998877776665555542221 2334799999998888877766
Q ss_pred c
Q psy69 155 I 155 (157)
Q Consensus 155 ~ 155 (157)
.
T Consensus 248 ~ 248 (513)
T KOG0254|consen 248 S 248 (513)
T ss_pred H
Confidence 4
No 7
>KOG0255|consensus
Probab=99.69 E-value=2.1e-16 Score=124.17 Aligned_cols=141 Identities=22% Similarity=0.147 Sum_probs=116.0
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+..+.+.... .+..+++.+|..+|+++.|.++||+|||++++++.++..++.+..++++|++.++++|++.|++.++..
T Consensus 111 ~~~c~~~~~~-~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 111 NLVCDSSTLV-ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred ceeeCcHhHH-HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence 3455566777 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHhhhccccCCcccccCCCChhh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFS-----------------------AVLLPQLHRESSHILVTPGEASW 151 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~w 151 (157)
.....++.|+++++.|+.........+..+.... .++...+.||+++|+..+++.++
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~ 269 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDE 269 (521)
T ss_pred HHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHH
Confidence 9999999999999999988887222222111111 11223444699999999998877
Q ss_pred hhhcc
Q psy69 152 IGKIS 156 (157)
Q Consensus 152 ~~~~~ 156 (157)
..+++
T Consensus 270 a~~~l 274 (521)
T KOG0255|consen 270 AIKIL 274 (521)
T ss_pred HHHHH
Confidence 76653
No 8
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.68 E-value=6.3e-16 Score=117.62 Aligned_cols=120 Identities=13% Similarity=0.072 Sum_probs=108.8
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.+..+. ++..+.+.++..+++++.|++.||+|||+++..+..+.+++.+.++++++++.+++.|++.|++.+...
T Consensus 37 ~~~~~s~~~~-g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~ 115 (393)
T PRK09705 37 QASGMSFSVA-ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQ 115 (393)
T ss_pred HHhCCCHHHH-HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHh
Confidence 4578999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
+....++.|.+| ++|++..+.+..+...|..+++.+.+.+.
T Consensus 116 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~ 156 (393)
T PRK09705 116 AVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV 156 (393)
T ss_pred hhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999987 77899999888777777777777666554
No 9
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.67 E-value=2.6e-15 Score=116.49 Aligned_cols=112 Identities=18% Similarity=0.256 Sum_probs=97.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh------------cCHHHHHHHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA------------DDVLQLCIGRF 84 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 84 (157)
++.++.+. ++..+.+.++..+++++.|+++||+|||++++.+..++.++....++. +.+..++++|+
T Consensus 50 ~~~~~~~~-~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~ 128 (479)
T PRK10077 50 ESAANSLL-GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRI 128 (479)
T ss_pred ccCChhHH-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHH
Confidence 47788899 999999999999999999999999999999999999988887766652 12456789999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 85 ITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSA 129 (157)
Q Consensus 85 l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~ 129 (157)
+.|++.|...+....+++|++|+++|++..+..+.+..+|..+++
T Consensus 129 l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~ 173 (479)
T PRK10077 129 IGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVY 173 (479)
T ss_pred HHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887777666655543
No 10
>PRK03545 putative arabinose transporter; Provisional
Probab=99.66 E-value=2e-15 Score=114.61 Aligned_cols=120 Identities=13% Similarity=-0.052 Sum_probs=108.9
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+++|.++.+. ++..+.+.++..+++++.|++.||+|||+.+..+.....++...+.++++++.++++|++.|++.+...
T Consensus 37 ~~~~~s~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 115 (390)
T PRK03545 37 QSFHMQTAQV-GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFW 115 (390)
T ss_pred hHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 4588999999 999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
+....++.|++|+|+|++..+....+..++..+++.+...+
T Consensus 116 ~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l 156 (390)
T PRK03545 116 SITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVI 156 (390)
T ss_pred HHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 89999999999999999999988888887777776555433
No 11
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.66 E-value=2.6e-15 Score=114.86 Aligned_cols=119 Identities=18% Similarity=0.265 Sum_probs=108.8
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+...++..+++++.|+++||+|||+.+..+.+...++..+..++++++.+.++|++.|++.+...
T Consensus 46 ~~~~~s~~~~-~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~ 124 (426)
T PRK12307 46 ADLGLTDMEG-AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEY 124 (426)
T ss_pred HHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHH
Confidence 4578899999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQ 134 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 134 (157)
+....++.|.+|+|+|++..+....+..+|..+++.+.+.
T Consensus 125 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~ 164 (426)
T PRK12307 125 ACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS 164 (426)
T ss_pred HHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999998888888777777655443
No 12
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.66 E-value=3e-15 Score=114.05 Aligned_cols=121 Identities=16% Similarity=0.117 Sum_probs=109.9
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+...++..+++++.|.+.||+|||+.+..+.++..++..+..+.++++.+++.|++.|++.+...
T Consensus 48 ~~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 126 (394)
T PRK10213 48 QDLGISEGVA-GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFW 126 (394)
T ss_pred HHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHH
Confidence 4578999999 999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
+....++.|++|+|+|++..+......+++..+++.+.+.+.
T Consensus 127 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~ 168 (394)
T PRK10213 127 AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG 168 (394)
T ss_pred HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888877777777766655543
No 13
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.65 E-value=2.8e-15 Score=113.31 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=107.6
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+...++..++.++.|+++||+|||+.++.+.+...++..+..+.++++.+++.|++.|++.+...
T Consensus 40 ~~~~~s~~~~-g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~ 118 (405)
T TIGR00891 40 GEFGLTTVDA-ASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEY 118 (405)
T ss_pred HHhCCChhhH-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhh
Confidence 4578899999 999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
+....++.|.+|+++|++..+..+....+|..+++.+..
T Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 157 (405)
T TIGR00891 119 GSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYS 157 (405)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888887777777665543
No 14
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.65 E-value=2.3e-15 Score=113.37 Aligned_cols=117 Identities=17% Similarity=0.039 Sum_probs=109.1
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++++..+. ++..+.|.++..+++++...++||+.||+.++....+++++.+++.+++|++.++++|++.|+..|..+
T Consensus 41 ~dl~vs~~~a-G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~ 119 (394)
T COG2814 41 ADLGVSEGAA-GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFW 119 (394)
T ss_pred HHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3488999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
+.......+++|+++|+++.+....+..++..+|..+.
T Consensus 120 ~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLG 157 (394)
T COG2814 120 SIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLG 157 (394)
T ss_pred HHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHH
Confidence 99999999999999999999998888886666654443
No 15
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.64 E-value=3.9e-15 Score=111.61 Aligned_cols=119 Identities=18% Similarity=0.073 Sum_probs=107.4
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
.++++.++.+. +++.+...++..++.++.|+++||+|||+.+..+.+...++..+..+.++++.++++|++.|++.+..
T Consensus 21 ~~~~g~s~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 99 (399)
T TIGR00893 21 QEDLGLSAAQY-GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPF 99 (399)
T ss_pred HHhhCCChhhH-HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhh
Confidence 34578899999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
.+....++.|++|+|+|++..+..+....+|..+++.+.+
T Consensus 100 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 139 (399)
T TIGR00893 100 FPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVG 139 (399)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 9999999999999999999999888777777666655443
No 16
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.64 E-value=7.9e-15 Score=110.93 Aligned_cols=119 Identities=9% Similarity=-0.105 Sum_probs=95.5
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+++++++.+. +++.+.+.++..+++++.|+++||+|||+.+.........+.......+++..++++|++.|++.+. .
T Consensus 19 ~~~~~s~~~~-g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~ 96 (368)
T TIGR00903 19 EDIDVSKEEL-GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-L 96 (368)
T ss_pred HHhCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-H
Confidence 3578899999 9999999999999999999999999999886655544444333223337899999999999999986 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
......++|++|+++|++..+..+.+..+|..+++.+.+.+
T Consensus 97 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l 137 (368)
T TIGR00903 97 LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKI 137 (368)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566679999999999999999888887777775554444
No 17
>KOG1330|consensus
Probab=99.64 E-value=1.5e-16 Score=120.40 Aligned_cols=128 Identities=11% Similarity=0.054 Sum_probs=117.4
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
++.+|+++... +++++.+.+...+.+|++|++.||+.||+++.++..+..++.+..+++.++|++.++|.+.|+|-+..
T Consensus 60 ~~~fni~~s~~-Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~ 138 (493)
T KOG1330|consen 60 QTYFNISDSEL-GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASY 138 (493)
T ss_pred HHhcCCCchhc-cchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 34588999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCccc
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRESSHI 142 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (157)
.++.+++++|.+|..+|++..++++.....|.++|..+...+.+.+..|
T Consensus 139 ~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W 187 (493)
T KOG1330|consen 139 SPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW 187 (493)
T ss_pred cccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence 9999999999999999999999999999988888876666665544433
No 18
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.64 E-value=1.5e-18 Score=133.65 Aligned_cols=135 Identities=21% Similarity=0.333 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhhhhhHHHH
Q psy69 21 KQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD---DVLQLCIGRFITGVAIGKSELNH 97 (157)
Q Consensus 21 ~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~ 97 (157)
+.+. ++..+...+|..+|+++.|+++||+|||+.++.+.++..++.++..+++ +++.+.++|++.|++.|......
T Consensus 45 ~~~~-~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 45 SLLS-SLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred HHHH-HHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4566 8899999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------------hhccccCCcccccCCCC
Q psy69 98 QLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL-----------------------------LPQLHRESSHILVTPGE 148 (157)
Q Consensus 98 ~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 148 (157)
+.|+.|..|++.|++.....+....+|..++..+ .....||+|+|+..++|
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~ 203 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGR 203 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccc
Confidence 9999999999999988877777665554443222 22334999999999998
Q ss_pred hhhhhhcc
Q psy69 149 ASWIGKIS 156 (157)
Q Consensus 149 ~~w~~~~~ 156 (157)
.+..+|++
T Consensus 204 ~~~A~~~l 211 (451)
T PF00083_consen 204 DEEAEKVL 211 (451)
T ss_pred cccccccc
Confidence 88777764
No 19
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.63 E-value=1.1e-14 Score=110.29 Aligned_cols=128 Identities=16% Similarity=0.123 Sum_probs=113.7
Q ss_pred CccccccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy69 7 PLPIFCYLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFIT 86 (157)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (157)
.+|.+.+ ++|.++.+. +++.+.+.++..+++++.|+++||+|||+.+..+.++..++.....++++++.+.++|++.
T Consensus 28 ~lp~~~~--~~~~s~~~~-G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 104 (381)
T PRK03633 28 LVPLWLA--QEHLPTWQV-GVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVA 104 (381)
T ss_pred HHHHHHH--HcCCCHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444444 467899999 9999999999999999999999999999999999999999988888899999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 87 GVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 87 G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
|++.+...+.....+.+..++++|++..+..+....+|..+++.+.+.+.+
T Consensus 105 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 155 (381)
T PRK03633 105 GIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST 155 (381)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999998888888888899999999999999998888888888888776654
No 20
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.62 E-value=1.2e-14 Score=111.35 Aligned_cols=118 Identities=14% Similarity=0.046 Sum_probs=103.1
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+.+.++..+++++.|+++||+|||++++.+..+..++..++.++++++.++++|+++|++.+...
T Consensus 44 ~~~~~~~~~~-~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~ 122 (413)
T PRK15403 44 RDFNADVSLA-PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIA 122 (413)
T ss_pred HHhCCCHHHH-HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3477888999 999999999999999999999999999999999999999999999999999999999999999988767
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
.....++.|.+|+++|++..+..+....++..+++.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~ 161 (413)
T PRK15403 123 TVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGA 161 (413)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888999999999998888777776666666654443
No 21
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.62 E-value=9.2e-15 Score=113.43 Aligned_cols=121 Identities=14% Similarity=0.092 Sum_probs=110.7
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. +++.+.+.++..++.++.|+++||+|||+.++.+.++..++..++.++++++.++++|++.|++.+...
T Consensus 30 ~~~g~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~ 108 (485)
T TIGR00711 30 GDLGSSLSQV-QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLI 108 (485)
T ss_pred HhcCCChhhh-hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHH
Confidence 3477888899 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
+....++.|.+|+++|++..+..+....++..+++.+.+.+.
T Consensus 109 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 150 (485)
T TIGR00711 109 PLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII 150 (485)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence 999999999999999999999998888888888776665543
No 22
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.62 E-value=2e-14 Score=109.37 Aligned_cols=116 Identities=24% Similarity=0.210 Sum_probs=103.7
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+...++..+++++.|+++||+|||+.+..+.++..++.++..+.++++.+++.|++.|++.+...
T Consensus 43 ~~~~~s~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~ 121 (406)
T PRK11551 43 QEFGLDVAQM-GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGAL 121 (406)
T ss_pred HHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHH
Confidence 3478899999 999999999999999999999999999999999998888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
+....++.|.+|+++|++..+..+....+|..+++.+
T Consensus 122 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 158 (406)
T PRK11551 122 PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVI 158 (406)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988777766665555443
No 23
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.62 E-value=1.7e-14 Score=112.83 Aligned_cols=122 Identities=11% Similarity=-0.048 Sum_probs=109.1
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+++|.++.+. ++..+.+.++..+..++.|+++||+|||+.++.+.....++.++++++++++.++++|+++|++.+...
T Consensus 34 ~~l~~s~~~~-~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~ 112 (495)
T PRK14995 34 MTLGASGNEL-LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIV 112 (495)
T ss_pred HHhCCCHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3477888899 999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 95 LNHQLFMTALV-VILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 95 ~~~~~~~~~~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
+.....+.+.+ |+++|++..+.......+|..+++.+.+.+.+
T Consensus 113 ~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~ 156 (495)
T PRK14995 113 PATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE 156 (495)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 87777776765 78999999999999888888888777666643
No 24
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.61 E-value=1.8e-14 Score=108.43 Aligned_cols=119 Identities=15% Similarity=0.158 Sum_probs=107.3
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+.+.++..+++++.|++.||+|||+.+..+.....++.....+.++++.+.+.|++.|++.+...
T Consensus 33 ~~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 111 (385)
T TIGR00710 33 ADLSTPASIV-QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGS 111 (385)
T ss_pred HHhCCCHHHH-HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHH
Confidence 4478899999 999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQ 134 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 134 (157)
+....++.|.+|+++|++..+..+....++..+++.+.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 151 (385)
T TIGR00710 112 VISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGY 151 (385)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777776666555443
No 25
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.61 E-value=1.8e-14 Score=107.33 Aligned_cols=117 Identities=12% Similarity=0.020 Sum_probs=103.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD-----DVLQLCIGRFITGVAIG 91 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~G~~~g 91 (157)
.+.++.+. +++.+...++..+++++.|+++||+|||+.+..+..+..++..+..+.+ +++.+++.|++.|++.+
T Consensus 29 ~~~s~~~~-g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 107 (365)
T TIGR00900 29 GTGSASVL-SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQA 107 (365)
T ss_pred hhccHHHH-HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 56788999 9999999999999999999999999999999999888888877777766 89999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQ 134 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 134 (157)
...+...+++.|++|+++|++..+..+....++..+++.+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 150 (365)
T TIGR00900 108 FFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGL 150 (365)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888887777666555433
No 26
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.60 E-value=2.1e-14 Score=108.83 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=103.2
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+++|.++.+. ++..+...++..+++++.|++.||+|||+.+..+..+..++.++..++++++.+++.|++.|++.+...
T Consensus 31 ~~~g~s~~~~-g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~ 109 (382)
T PRK10091 31 HDVGISIPAA-GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFF 109 (382)
T ss_pred HHcCCCHHHH-hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHH
Confidence 3578899999 999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
+....++.|++|+++|++..+....+..++..+++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l 146 (382)
T PRK10091 110 GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPL 146 (382)
T ss_pred HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccH
Confidence 8888899999999999988887766666655555443
No 27
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.60 E-value=1.2e-14 Score=107.93 Aligned_cols=121 Identities=18% Similarity=0.207 Sum_probs=107.8
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. +++.+.+.++..+++++.|+++||+|||+.+..+.+...++..+..++++.+.+++.|++.|++.+...
T Consensus 25 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 103 (352)
T PF07690_consen 25 EELGLSPSQI-GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFS 103 (352)
T ss_dssp CCSTTTSHCH-HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccccc
Confidence 4577899999 999999999999999999999999999999999999998886666666888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
+....++.|++|+++|++..+..+....++..+++.+.+.+.
T Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 145 (352)
T PF07690_consen 104 PASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI 145 (352)
T ss_dssp HHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh
Confidence 999999999999999999999999999888888877665554
No 28
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.60 E-value=2.4e-14 Score=110.30 Aligned_cols=115 Identities=10% Similarity=0.014 Sum_probs=104.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
+++.++.+. +++.+.+.++..+++++.|++.||+|||+.+.++.++..++.++..+.++++.+.+.|++.|++.+...+
T Consensus 52 ~~g~s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~ 130 (434)
T PRK11663 52 DLGLSRSDI-GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWP 130 (434)
T ss_pred hcCCCHHHH-HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccch
Confidence 478899999 9999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
....++.|++|+++|++..+..+....+|..+++.+
T Consensus 131 ~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~ 166 (434)
T PRK11663 131 VCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLV 166 (434)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998887777666665443
No 29
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.60 E-value=2.4e-14 Score=107.27 Aligned_cols=117 Identities=13% Similarity=0.111 Sum_probs=100.5
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD-DVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~g~ 92 (157)
++++++++.+. +++.+...++..+++++.|+++||+|||+.+..+.+...++..+..+.+ +++.+++.|++.|++.+.
T Consensus 29 ~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 107 (366)
T TIGR00886 29 KDDLGLSTAQL-GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS 107 (366)
T ss_pred HHHhCCCHHHh-hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh
Confidence 34588999999 9999999999999999999999999999999999999999999998888 999999999999998654
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 93 SELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
......++.|++|+++|++..+.......+|..+++.+.
T Consensus 108 -~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 146 (366)
T TIGR00886 108 -FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVM 146 (366)
T ss_pred -hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 566788999999999999998877755555544444443
No 30
>PRK03699 putative transporter; Provisional
Probab=99.60 E-value=1.8e-14 Score=109.64 Aligned_cols=117 Identities=11% Similarity=0.044 Sum_probs=102.1
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+++++++.+. ++..+...++..+++++.|++.||+|||+.+..+.+...++..+..+.++++.+++.|++.|++.+...
T Consensus 35 ~~~~~s~~~~-g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~ 113 (394)
T PRK03699 35 EYFNLPVSSM-SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITM 113 (394)
T ss_pred HHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhc
Confidence 3578899999 999999999999999999999999999999999999999999888899999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
+....++.|.+|+++|++..+..+...+++..+++.+.
T Consensus 114 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 151 (394)
T PRK03699 114 SIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIA 151 (394)
T ss_pred cchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999888766665555555554443
No 31
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.60 E-value=3.4e-14 Score=109.21 Aligned_cols=118 Identities=14% Similarity=0.062 Sum_probs=112.0
Q ss_pred cccccHHH-HHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 16 RRIIYKQQ-VLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 16 ~~~~~~~~-~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++|+++.+ . +.+.+.+..++.+..++.|+++||+|.|+++..+.+...+...+..+++++..+.+.|++.|++.+...
T Consensus 55 elglT~~qv~-G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~ 133 (511)
T TIGR00806 55 VLNFTEETVT-NEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI 133 (511)
T ss_pred HcCCCHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999 8 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
....++.+++|+++|+++++..+.+..+|..+++.+.+++
T Consensus 134 -A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 134 -AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred -HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998887777663
No 32
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.59 E-value=1e-14 Score=114.02 Aligned_cols=101 Identities=14% Similarity=0.218 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHH--------HHHHHHHHHhhhhhhHHHHHHH
Q psy69 29 ASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQ--------LCIGRFITGVAIGKSELNHQLF 100 (157)
Q Consensus 29 ~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~G~~~g~~~~~~~~~ 100 (157)
.+...++..+++++.|+++||+|||+++.++.+++.++.+++++++++.. ++++|+++|++.|..++....+
T Consensus 63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~ 142 (490)
T PRK10642 63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF 142 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence 47788999999999999999999999999999999999999999999864 7889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 101 MTALVVILMASLSAHSVNMSIGMCQGFSA 129 (157)
Q Consensus 101 ~~~~~p~~~r~~~~~~~~~~~~~~~~~~~ 129 (157)
++|++|+++|++..+....+..+|..++.
T Consensus 143 ~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~ 171 (490)
T PRK10642 143 VAEYSPDRKRGFMGSWLDFGSIAGFVLGA 171 (490)
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999988776655555544443
No 33
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.59 E-value=5.5e-14 Score=105.87 Aligned_cols=117 Identities=17% Similarity=0.208 Sum_probs=105.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
++|+++.+. ++..+...++..++.++.|+++||+|||+.+..+.+...++.....+.++++.+.+.|++.|++.+...+
T Consensus 20 ~~~~s~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 98 (377)
T PRK11102 20 DFGVSAGSV-QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASV 98 (377)
T ss_pred HhCCCHHHH-HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 478899999 9999999999999999999999999999999999999999999998899999999999999999999889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
....++.|.+|+++|++..+..+....++..+++.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 136 (377)
T PRK11102 99 VINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGG 136 (377)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888777766666655443
No 34
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.58 E-value=4.2e-14 Score=109.64 Aligned_cols=121 Identities=9% Similarity=-0.056 Sum_probs=108.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh--cCHHHHHHHHHHHHhhhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA--DDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~g~~ 93 (157)
+++.++.+. +.+.+.+.++..+++++.|+++||+|||+.+..+.++..++.++..+. .+++.+++.|+++|++.+..
T Consensus 70 ~~~~s~~~~-g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~ 148 (465)
T TIGR00894 70 NFKWSGALQ-GLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSV 148 (465)
T ss_pred CCCCCHHHh-hHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccc
Confidence 578899999 999999999999999999999999999999999998888887776543 56788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
.+....+++|++|+++|++..+....+..+|..+++.+.+.+..
T Consensus 149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~ 192 (465)
T TIGR00894 149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCE 192 (465)
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999888888888777665543
No 35
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.58 E-value=4.9e-14 Score=107.37 Aligned_cols=114 Identities=13% Similarity=-0.000 Sum_probs=98.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
+.+.++.+. +++.+.+.+...+..++.|+++||+|||++++++..+..++.+.+.+..+. ++.|+++|++.+...+
T Consensus 32 ~~~~s~~~~-~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~p 107 (393)
T PRK11195 32 ELHYPDWSQ-PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSP 107 (393)
T ss_pred HcCCcHHHH-HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 456678888 999999999999999999999999999999999999988887776665553 6789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
...+++.|++|+++|+++.+..+.....+..+|+.+.+
T Consensus 108 a~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG 145 (393)
T PRK11195 108 AKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGG 145 (393)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888777766666655543
No 36
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.58 E-value=7.3e-14 Score=108.89 Aligned_cols=118 Identities=17% Similarity=0.196 Sum_probs=106.9
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+++++++.+. ++..+...++..+++++.|+++||+|||+.+..+.+...++.++..+.++++.+++.|++.|++.+..+
T Consensus 48 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~ 126 (496)
T PRK03893 48 GEFGLTTVQA-ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEY 126 (496)
T ss_pred HHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
+....++.|.+|+++|++..+.......+|..+++.+..
T Consensus 127 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 165 (496)
T PRK03893 127 GSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYS 165 (496)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888877777777765543
No 37
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.58 E-value=6.2e-14 Score=107.45 Aligned_cols=122 Identities=13% Similarity=0.021 Sum_probs=110.4
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH---hcCHHHHHHHHHHHHhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF---ADDVLQLCIGRFITGVAI 90 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~G~~~ 90 (157)
++++++++.+. +++.+...++..+++++.|++.||+|||+++..+..+.+++..+... .++++.+++.|++.|++.
T Consensus 30 ~~~~~~s~~~~-g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~ 108 (410)
T TIGR00885 30 QQAFTLTAFQA-ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGL 108 (410)
T ss_pred HHHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhH
Confidence 44578999999 99999999999999999999999999999999999999998877544 357889999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
+..++..+.++.+..|++.|++..+..+...++|..+++.+.+.+.
T Consensus 109 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 109 GFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988877664
No 38
>PRK12382 putative transporter; Provisional
Probab=99.57 E-value=2.7e-14 Score=108.30 Aligned_cols=120 Identities=16% Similarity=0.058 Sum_probs=99.2
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHH---HH-----hcCHHHHHHHHHHH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLM---AF-----ADDVLQLCIGRFIT 86 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~l~ 86 (157)
++.|.|+.+. ++..+.+.++..+++++.|+++||+|||+.++.+.+...++.+.. .+ .++++.+++.|++.
T Consensus 44 ~~lg~s~~~~-g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 122 (392)
T PRK12382 44 HDLGFGNTMV-GIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLIL 122 (392)
T ss_pred HhcCCcHHHH-HHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHH
Confidence 4578899999 999999999999999999999999999999998887766654332 11 24678889999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 87 GVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 87 G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
|++.+...+....++.|.+|+++|+++.+..+.+...+..+++.+.+.+
T Consensus 123 G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l 171 (392)
T PRK12382 123 GFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLL 171 (392)
T ss_pred HHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888889999999999999999988777766666665554433
No 39
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.57 E-value=9.6e-14 Score=105.33 Aligned_cols=117 Identities=18% Similarity=0.154 Sum_probs=103.7
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+.+.++..+++++.|+++||+|||+.+..+.+...++..+....++.+.+++.|++.|++.+...
T Consensus 31 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 109 (392)
T PRK10473 31 ADLNASEAQL-HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCY 109 (392)
T ss_pred HHhCCCHHHH-HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHH
Confidence 3477899999 999999999999999999999999999999999999999998888888999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
+....++.|.+|+++|++..+..+....++..+++.+.
T Consensus 110 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~ 147 (392)
T PRK10473 110 VVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLG 147 (392)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998887776666655555443
No 40
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.57 E-value=3.1e-14 Score=109.54 Aligned_cols=105 Identities=20% Similarity=0.270 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHH--------HHHHHHHHHHhhhhhhHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVL--------QLCIGRFITGVAIGKSELNH 97 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~ 97 (157)
....+...++..+++++.|+++||+|||+.+..+.+++.++.+++++++++. .++++|+++|++.|...+..
T Consensus 66 ~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~ 145 (432)
T PRK10406 66 AGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTS 145 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhH
Confidence 3444556677779999999999999999999999999999999998888764 57889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 98 QLFMTALVVILMASLSAHSVNMSIGMCQGFSAV 130 (157)
Q Consensus 98 ~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~ 130 (157)
..++.|++|+++|++..+..+.+...|..++..
T Consensus 146 ~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~ 178 (432)
T PRK10406 146 ATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL 178 (432)
T ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887766655555444443
No 41
>PRK10504 putative transporter; Provisional
Probab=99.57 E-value=8.4e-14 Score=108.02 Aligned_cols=120 Identities=15% Similarity=0.054 Sum_probs=107.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
++|.++.+. ++..+.+.++..++.++.|+++||+|||+.++.+..+..++.++..+.++++.+++.|+++|++.+...+
T Consensus 39 ~~g~s~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~ 117 (471)
T PRK10504 39 SLGESPLHM-HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVP 117 (471)
T ss_pred HhCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHH
Confidence 478899999 9999999999999999999999999999999998888888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
....++.|.+|+++|++..+..+....++..+++.+.+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~ 158 (471)
T PRK10504 118 VGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV 158 (471)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999888877777777766655543
No 42
>PRK10133 L-fucose transporter; Provisional
Probab=99.57 E-value=6.8e-14 Score=108.06 Aligned_cols=120 Identities=14% Similarity=0.059 Sum_probs=106.2
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHH---HHhcCHHHHHHHHHHHHhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLM---AFADDVLQLCIGRFITGVAI 90 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~G~~~ 90 (157)
++++++++.+. ++..+.+.++..+++++.|++.||+|||+++..+..+..++.+++ .++++++.++++|+++|++.
T Consensus 53 ~~~~~~s~~~~-gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~ 131 (438)
T PRK10133 53 QQAFTLTNFQA-GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGL 131 (438)
T ss_pred HHHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 45688999999 999999999999999999999999999999999999999998775 45789999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQ 134 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 134 (157)
+...+..+.++.|..|+++|.+..+..+....+|..+++.+.+.
T Consensus 132 g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 132 GCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred HHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998777777767778888888888888777543
No 43
>TIGR00895 2A0115 benzoate transport.
Probab=99.57 E-value=6.3e-14 Score=105.57 Aligned_cols=120 Identities=23% Similarity=0.220 Sum_probs=108.0
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. +++.+...++..++.++.|+++||+|||+.+..+.+...++..+..+.++++.+++.|++.|++.+...
T Consensus 45 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 123 (398)
T TIGR00895 45 AEWGLDPVQL-GFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLM 123 (398)
T ss_pred hccCCCHHHH-HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccch
Confidence 3477899999 999999999999999999999999999999999999888888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
+....++.|.+|+++|++..+..+....++..+++.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 164 (398)
T TIGR00895 124 PNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164 (398)
T ss_pred hhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888887777776665444
No 44
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.56 E-value=2.8e-14 Score=108.41 Aligned_cols=118 Identities=17% Similarity=0.097 Sum_probs=98.2
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh---c-----CHHHHHHHHHHH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA---D-----DVLQLCIGRFIT 86 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~l~ 86 (157)
++++.++.+. +++.+.+.++..+++++.|+++||+|||+++..+.+...++.....+. + +++.+++.|++.
T Consensus 44 ~~~g~s~~~~-g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 122 (399)
T PRK05122 44 DQLGFSAFLA-GLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLL 122 (399)
T ss_pred HhcCccHHHH-HHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHH
Confidence 4577899999 999999999999999999999999999999999988877766554432 2 456788999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 87 GVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 87 G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
|++.+...+....++.|.+|+++|++..+..+.....+..+++.+..
T Consensus 123 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~ 169 (399)
T PRK05122 123 GIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGV 169 (399)
T ss_pred HhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999988777666655555544433
No 45
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.56 E-value=4e-14 Score=105.81 Aligned_cols=110 Identities=13% Similarity=0.082 Sum_probs=97.5
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+.+.++..+++++.|+++||+|||+++..+.++..++...+.++++++.++++|++.|++.+..+
T Consensus 31 ~~~~~s~~~~-g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 109 (377)
T TIGR00890 31 RYFGVGVTAV-AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAY 109 (377)
T ss_pred HHhCCCHHHH-HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3478899999 999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQG 126 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~ 126 (157)
......+.|++| |+|++..+....+.+++..
T Consensus 110 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 140 (377)
T TIGR00890 110 GIALNTAVKWFP-DKRGLASGIIIGGYGLGSF 140 (377)
T ss_pred HhHHHHHHHHcC-cccHHHHHHHHHhcchhHh
Confidence 888888888887 5688888877766655443
No 46
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.56 E-value=4.8e-14 Score=104.27 Aligned_cols=120 Identities=22% Similarity=0.269 Sum_probs=112.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
.+.++.+. ++..+...++..+++++.|+++||+|||+.+..+.....++.....+.++++.+.+.|++.|++.+...+.
T Consensus 29 ~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 107 (352)
T cd06174 29 LGLSASQA-GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPA 107 (352)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHh
Confidence 57788999 99999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 97 HQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 97 ~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
...++.|.+|+|+|++..+..+....+|..+++.+...+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 148 (352)
T cd06174 108 AAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148 (352)
T ss_pred HHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888877754
No 47
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.56 E-value=1.6e-13 Score=104.54 Aligned_cols=116 Identities=11% Similarity=0.049 Sum_probs=100.4
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+.+.++..+++++.|.++||+|||+.+..+.....++.....+.++++.+++.|++.|++.+...
T Consensus 41 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~ 119 (406)
T PRK15402 41 EDFNAGAEWV-PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIG 119 (406)
T ss_pred HHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHH
Confidence 4578899999 999999999999999999999999999999999999999888888889999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
+....++.|.+|+++|.+..+.......++..+++.+
T Consensus 120 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 156 (406)
T PRK15402 120 AVGYAAIQESFEEADAIKITALMANVALLAPLLGPLV 156 (406)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999887776555444444444444
No 48
>KOG2615|consensus
Probab=99.55 E-value=1.2e-14 Score=108.01 Aligned_cols=116 Identities=18% Similarity=0.193 Sum_probs=105.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHH
Q psy69 20 YKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQL 99 (157)
Q Consensus 20 ~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~ 99 (157)
+..-. +.+.+.+.++.++.++.+|.++||+|||++++.+.+..+++..+.+.+.++..+.+.|++.|+.-|- .....+
T Consensus 66 ~~~ya-GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~rA 143 (451)
T KOG2615|consen 66 SVFYA-GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIRA 143 (451)
T ss_pred cchhh-hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHHH
Confidence 44556 8999999999999999999999999999999999999999999999999997777779999999886 556779
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 100 FMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 100 ~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
+++|.++++.|++.++..+..+++|..+||++.+.+..
T Consensus 144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 99999999999999999999999999999999887765
No 49
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.55 E-value=1.9e-13 Score=104.35 Aligned_cols=121 Identities=16% Similarity=0.072 Sum_probs=108.2
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++.+.++.+. ++..+...+...+.+++.|+++||+|||+.+..+.....++.....+.++++.+++.|++.|++.+...
T Consensus 39 ~~~g~s~~~~-gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~ 117 (400)
T PRK11646 39 DQLGWAAVMV-GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFD 117 (400)
T ss_pred HHhCCcHHHH-HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3467899999 999999999999999999999999999999999999999999998888999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
+...+++.|.+|+|+|++..+..+....++..+++.+.+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 118 PPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999988888888777766655543
No 50
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.55 E-value=1.2e-14 Score=108.69 Aligned_cols=114 Identities=12% Similarity=0.027 Sum_probs=101.7
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. +++.+...++..+++++.|+++||+|||+.+..+.+...++.++..++++++.+++.|++.|++.+...
T Consensus 23 ~~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 101 (379)
T TIGR00881 23 EEIGLSKTDL-GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGW 101 (379)
T ss_pred HHhCCCHhHH-HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccC
Confidence 3478899999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSA 129 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~ 129 (157)
+....++.|++|+++|++..+..+....+|..+++
T Consensus 102 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 136 (379)
T TIGR00881 102 PPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLP 136 (379)
T ss_pred CchHHHHHHhcCHhhheeeEeehhccchhHHHHHH
Confidence 99999999999999998887766655555554444
No 51
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.54 E-value=1e-14 Score=113.30 Aligned_cols=113 Identities=11% Similarity=-0.120 Sum_probs=95.7
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH-----hcCHHHHHHHHHHHHhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF-----ADDVLQLCIGRFITGVA 89 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~ 89 (157)
++++++..+. +++.+.+.++..++.++.|+++||+|||+.+..+.+...+.....+. +++++.+++.|++.|++
T Consensus 57 ~~~~~s~~~~-g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 135 (467)
T PRK09556 57 STYGLSTTEL-GMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFF 135 (467)
T ss_pred HhcCCCHHHH-HHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 4578899999 99999999999999999999999999999988887777666655544 57899999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 90 IGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFS 128 (157)
Q Consensus 90 ~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~ 128 (157)
.+...+....++.|++|+++|++..+..+.+..+|..++
T Consensus 136 ~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~ 174 (467)
T PRK09556 136 QSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGA 174 (467)
T ss_pred HhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHH
Confidence 999889999999999999999888776655554444443
No 52
>PRK10054 putative transporter; Provisional
Probab=99.54 E-value=2.5e-13 Score=103.53 Aligned_cols=120 Identities=9% Similarity=0.034 Sum_probs=105.2
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+...++..+++++.|+++||+|||+.+.++.+...++.....+.++++.++++|.+.|.+.+...
T Consensus 36 ~~~g~s~~~~-g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 114 (395)
T PRK10054 36 RQYSLSVDLI-GYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFS 114 (395)
T ss_pred HHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999 999999999999999999999999999999999998888888888888899888888989888878778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
+....+..|..|+++|++..+..+....+|..+++.+.+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l 155 (395)
T PRK10054 115 TVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLL 155 (395)
T ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999998888888787777776665554
No 53
>PRK09952 shikimate transporter; Provisional
Probab=99.54 E-value=6e-14 Score=108.27 Aligned_cols=100 Identities=20% Similarity=0.207 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHH--------HHHHHHHHHHhhhhhhHHHHHHHHH
Q psy69 31 LGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVL--------QLCIGRFITGVAIGKSELNHQLFMT 102 (157)
Q Consensus 31 ~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~ 102 (157)
...++..+++++.|+++||+|||+.+..+.++..++..++++++++. .++++|+++|++.|...+....++.
T Consensus 72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~ 151 (438)
T PRK09952 72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAV 151 (438)
T ss_pred HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence 45577889999999999999999999999999999999999999876 4778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 103 ALVVILMASLSAHSVNMSIGMCQGFSAV 130 (157)
Q Consensus 103 ~~~p~~~r~~~~~~~~~~~~~~~~~~~~ 130 (157)
|++|+++|++..+....+..+|..++..
T Consensus 152 e~~p~~~rg~~~~~~~~g~~~G~~l~~~ 179 (438)
T PRK09952 152 ESAPKNKKAFYSSGVQVGYGVGLLLSTG 179 (438)
T ss_pred HhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999998887777776666655543
No 54
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.54 E-value=3.5e-13 Score=104.17 Aligned_cols=118 Identities=9% Similarity=0.038 Sum_probs=102.8
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA-----DDVLQLCIGRFITGVA 89 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~ 89 (157)
.++++++.|. ++..++..++..+..++.|++.||+|.|+.+.++.++..+......++ ++++.+++.|++.|++
T Consensus 63 ~~~~ls~~q~-g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig 141 (462)
T PRK15034 63 IGFNFTTDQL-FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA 141 (462)
T ss_pred hhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH
Confidence 3588999999 999999999999999999999999999999999999998888888876 7999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy69 90 IGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQ 134 (157)
Q Consensus 90 ~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 134 (157)
+..++.....+++++|+++|+++.++.....++|..+++++.|.
T Consensus 142 -g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 142 -GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred -HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66788899999999999999999998865555566555555443
No 55
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.53 E-value=2e-13 Score=106.45 Aligned_cols=114 Identities=12% Similarity=0.125 Sum_probs=96.7
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++++..+. +++.+.+.++..+++++.|+++||+|||+.+..+.+...++..+..++++++.++++|++.|++.+..
T Consensus 64 ~~~gls~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~- 141 (476)
T PLN00028 64 DNLNLTKSDI-GNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATF- 141 (476)
T ss_pred HHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh-
Confidence 4578899999 99999999999999999999999999999999999888888888888999999999999999988764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAV 130 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~ 130 (157)
.....+++|++|+++|++..+..+....+|..+++.
T Consensus 142 ~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~ 177 (476)
T PLN00028 142 VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQL 177 (476)
T ss_pred HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHH
Confidence 345668899999999999988776554444444433
No 56
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.53 E-value=1.4e-13 Score=105.71 Aligned_cols=113 Identities=19% Similarity=0.300 Sum_probs=100.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhhhhhHH
Q psy69 19 IYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD---DVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 19 ~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~ 95 (157)
.+..+. +++.+.+.++..+++++.|+++||+|||+.++.+.++..++..+..+.. +++.+++.|++.|++.+...+
T Consensus 68 ~~~~~~-~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~ 146 (481)
T TIGR00879 68 YSSSLW-GLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASA 146 (481)
T ss_pred CChhHH-HHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHh
Confidence 558889 9999999999999999999999999999999999999888888875543 455889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
....++.|++|+++|++..+..+....+|..+++.+.
T Consensus 147 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 147 LVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888888877777766
No 57
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.53 E-value=4.2e-13 Score=101.91 Aligned_cols=116 Identities=17% Similarity=0.199 Sum_probs=100.9
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+.+.++..+++++.|+++||+|||+.+..+.....++.....+.++++.+++.|++.|++.+...
T Consensus 36 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 114 (394)
T PRK11652 36 RDLNVREGAV-QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGG 114 (394)
T ss_pred HHhCCCHHHH-HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHH
Confidence 4578899999 999999999999999999999999999999999999988888888888999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
+....+..|.++++++++..+..+.+..++..+++.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 151 (394)
T PRK11652 115 VMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLI 151 (394)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999998888777766666555554443
No 58
>PRK11043 putative transporter; Provisional
Probab=99.52 E-value=3.4e-13 Score=102.61 Aligned_cols=117 Identities=21% Similarity=0.218 Sum_probs=100.3
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+++.++..+++++.|+++||+|||+.+..+..+..++..+..+.++++.+++.|++.|++.+...
T Consensus 34 ~~~~~s~~~~-g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~ 112 (401)
T PRK11043 34 ADLQTSASAV-SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAA 112 (401)
T ss_pred HHHCCCHHHH-HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHH
Confidence 4578899999 999999999999999999999999999999999998988888888889999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
.....++.|.+|++++.+..+..+....++..+++.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 150 (401)
T PRK11043 113 VIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLG 150 (401)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999888777666555555554554443
No 59
>PRK15075 citrate-proton symporter; Provisional
Probab=99.51 E-value=9.9e-14 Score=106.84 Aligned_cols=99 Identities=22% Similarity=0.324 Sum_probs=83.8
Q ss_pred HHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHH--------HHHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy69 33 VISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVL--------QLCIGRFITGVAIGKSELNHQLFMTAL 104 (157)
Q Consensus 33 ~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~~~ 104 (157)
.++..+++++.|+++||+|||+.++.+..+..++..++.++++++ .++++|++.|++.+...+....++.|+
T Consensus 66 ~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~ 145 (434)
T PRK15075 66 FLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEI 145 (434)
T ss_pred HHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhh
Confidence 344457899999999999999999999999999999999998876 357899999999999888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 105 VVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 105 ~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
+|+++|++..+..+....++..+++.+
T Consensus 146 ~p~~~rg~~~~~~~~~~~~g~~~g~~~ 172 (434)
T PRK15075 146 ATPGRKGFYTSWQSASQQVAVVFAALL 172 (434)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987776655554444433
No 60
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.50 E-value=3.9e-13 Score=100.78 Aligned_cols=119 Identities=14% Similarity=0.056 Sum_probs=99.4
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
.+++++++.+. ++..+.+.++..+++++.|+++||+|||+.+.++.+...++.... ..++.+.+++.|++.|++.+..
T Consensus 27 ~~~~~~s~~~~-g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~ 104 (355)
T TIGR00896 27 RSALGMSFSVA-GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAII 104 (355)
T ss_pred HHHhCCCHHHH-HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHH
Confidence 34578899999 999999999999999999999999999999999888877777666 6788888899999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
....+.++.|.+| ++|++..+..+....+|..+++.+.+.+
T Consensus 105 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l 145 (355)
T TIGR00896 105 NVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPL 145 (355)
T ss_pred hccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888886 5788888887776666666555444333
No 61
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.48 E-value=1.3e-12 Score=99.77 Aligned_cols=117 Identities=14% Similarity=0.048 Sum_probs=98.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHH---H-hcCHHHHHHHHHHHHhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMA---F-ADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~l~G~~~g 91 (157)
+++.++.+. ++..+.+.++..+++++.|++.||+|||+.+..+..+..++..+.. . .++++.+++.|++.|++.+
T Consensus 42 ~~g~s~~~~-g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~ 120 (402)
T TIGR00897 42 ALGLSPQQS-ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYP 120 (402)
T ss_pred HhCCCHHHh-HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchH
Confidence 468899999 9999999999999999999999999999999999888887765442 2 2477788889999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQ-GFSAVLLP 133 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~-~~~~~~~~ 133 (157)
........++.|.+|+++|++..+..+...++|. .+++.+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~ 163 (402)
T TIGR00897 121 LFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSS 163 (402)
T ss_pred HHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777778889999999999999998888777765 35554443
No 62
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.44 E-value=7.2e-13 Score=85.80 Aligned_cols=107 Identities=17% Similarity=0.209 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy69 31 LGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTALVVILMA 110 (157)
Q Consensus 31 ~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r 110 (157)
...++..++.++.+++.||+|||+.+..+.....++.......++.+...+.+++.|++.+...+....++.|.+|+++|
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 85 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEER 85 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhh
Confidence 45677888999999999999999999998888888888888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 111 SLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
++..+..+....++..+++.+.+.+.+
T Consensus 86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (141)
T TIGR00880 86 GVALGLMSAGIALGPLLGPPLGGVLAQ 112 (141)
T ss_pred hHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence 999999999999999999888877753
No 63
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.44 E-value=2.3e-12 Score=99.79 Aligned_cols=107 Identities=13% Similarity=-0.006 Sum_probs=94.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh----cCHHHHHHHHHHHHhhhhhh
Q psy69 18 IIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA----DDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~G~~~g~~ 93 (157)
++++.+. ++..+...++..+++++.|+++||+|||+.++.+.++..++.++..+. .+++.+++.|++.|++.+..
T Consensus 59 g~s~~~~-g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~ 137 (452)
T PRK11273 59 GFSRGDL-GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG 137 (452)
T ss_pred CCCHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhcc
Confidence 7899999 999999999999999999999999999999999998888888877765 36778888999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQ 125 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~ 125 (157)
.+.....+.|++|+++|++..+..+.+..++.
T Consensus 138 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 169 (452)
T PRK11273 138 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG 169 (452)
T ss_pred chHHHHHHHHhCChHHHHHHHHHHHHHHHhhh
Confidence 88777888999999999999988776666543
No 64
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.44 E-value=4.4e-14 Score=113.45 Aligned_cols=122 Identities=10% Similarity=0.016 Sum_probs=109.4
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc--------------------
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD-------------------- 74 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~-------------------- 74 (157)
+++++++.+. +++.+.+.++..++.++.+++.||+|||+.+.++.++++++.++.++.+
T Consensus 61 k~F~lss~~~-G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~ 139 (633)
T TIGR00805 61 RRFKLSTSSS-GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSS 139 (633)
T ss_pred hhhCCCCCcc-eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccc
Confidence 3478899999 9999999999999999999999999999999999999999998876542
Q ss_pred -------------------------------CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 75 -------------------------------DVLQLCIGRFITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGM 123 (157)
Q Consensus 75 -------------------------------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~ 123 (157)
.+..++++|++.|++.+..++....++.|++|++.|++..+..+....+
T Consensus 140 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~i 219 (633)
T TIGR00805 140 ANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVF 219 (633)
T ss_pred cccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHh
Confidence 1345678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccc
Q psy69 124 CQGFSAVLLPQLHR 137 (157)
Q Consensus 124 ~~~~~~~~~~~~~~ 137 (157)
|..+|+++.+.+.+
T Consensus 220 G~~lG~llgg~l~~ 233 (633)
T TIGR00805 220 GPAFGYLLGSFCLQ 233 (633)
T ss_pred hhHHHHHHHHHHHh
Confidence 99999888777654
No 65
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.44 E-value=6.7e-13 Score=102.37 Aligned_cols=112 Identities=15% Similarity=0.052 Sum_probs=96.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh----cCHHHHHHHHHHHHhhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA----DDVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~G~~~g~ 92 (157)
.|+++.+. ++..+.+.++..+++++.|+++||+|||+.+..+.++..++..+..+. .++..+.+.|++.|++.+.
T Consensus 56 ~g~s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~ 134 (438)
T TIGR00712 56 QGFSKGEL-GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGM 134 (438)
T ss_pred cCCCHhHh-HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhc
Confidence 47899999 999999999999999999999999999999998888888887776553 4566778899999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 93 SELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSA 129 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~ 129 (157)
.++.....+.|++|+++|++..+..+....++..+++
T Consensus 135 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~ 171 (438)
T TIGR00712 135 GWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPP 171 (438)
T ss_pred chHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHH
Confidence 8888889999999999999999888777665555543
No 66
>KOG2532|consensus
Probab=99.43 E-value=1.3e-12 Score=101.38 Aligned_cols=123 Identities=12% Similarity=0.016 Sum_probs=110.0
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc--CHHHHHHHHHHHHhhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD--DVLQLCIGRFITGVAIG 91 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g 91 (157)
+++++.++.+. +++.+.++.|..++.++.|++.||+|-|+++..+.++.++.+++...+. +++.+++.|+++|++.|
T Consensus 65 ~~~~~ws~~~k-~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g 143 (466)
T KOG2532|consen 65 AGEYDWSSTEK-GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQG 143 (466)
T ss_pred CceecCCHHHH-HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHh
Confidence 45688899999 9999999999999999999999999999999999999999999988764 45677899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
..++.......++.|+++|++..+....+..+|..++..+.+.+..
T Consensus 144 ~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~ 189 (466)
T KOG2532|consen 144 VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCE 189 (466)
T ss_pred HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 9999999999999999999999998888888877777666655543
No 67
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.42 E-value=6.9e-12 Score=102.07 Aligned_cols=111 Identities=11% Similarity=0.078 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTALV 105 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~ 105 (157)
.....+..++.+++.++.|+++||+|||++++.+.++.+++.++..+.++...+++.+++.|++.+...+....+++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566777899999999999999999999999999999999888888888888888888999988888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 106 VILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 106 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
|++.|++..++.+....+|..+++.+.+.+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~ 708 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFV 708 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998876554
No 68
>KOG3764|consensus
Probab=99.42 E-value=7.4e-13 Score=99.10 Aligned_cols=121 Identities=12% Similarity=0.036 Sum_probs=110.1
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
...+-++.+. +++.....+.+.+.+++.|.+.||+|+|..++.+.+.+..++++.++..+++++++.|.++|++.+...
T Consensus 99 ~~~~~e~~~i-G~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 99 ISLDRENTQI-GLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred cCccccccch-hHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 3345567888 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 95 LNHQLFMTALVVILM-ASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
....++++|.+|.+. |+++++..-.+.++|..+++.+.+.+.
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilY 220 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILY 220 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchH
Confidence 999999999999875 799999888888888888877766654
No 69
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.41 E-value=4.9e-12 Score=98.14 Aligned_cols=115 Identities=14% Similarity=0.137 Sum_probs=95.9
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHH-HHHHHHhhhhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCI-GRFITGVAIGKS 93 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~G~~~g~~ 93 (157)
++++.+..+. ++..+.+.++..++.++.|+++||+|||+.++.+.++..++.+++.++++++.+++ .|++.|++.+..
T Consensus 47 ~~~g~s~~~~-~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~ 125 (455)
T TIGR00892 47 QIFQATYSET-AWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFN 125 (455)
T ss_pred HHhCcchhHH-HHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhh
Confidence 4577888999 99999999999999999999999999999999999999998888888888887765 578999999876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
.......+.|++| ++|+++.+..+.+..++..+++.+
T Consensus 126 ~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l 162 (455)
T TIGR00892 126 FQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPL 162 (455)
T ss_pred hhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHH
Confidence 6667778889886 789999888777666555555333
No 70
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.41 E-value=1.2e-12 Score=102.05 Aligned_cols=120 Identities=17% Similarity=0.071 Sum_probs=105.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH-hccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEV-WGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~-~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
.+|+++.+. +.+.+.+.++..++++++|+++|| +|||+++.++.+...++..+..+.++++.+.+.|++.|++.|...
T Consensus 42 ~lg~s~~~a-g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~ 120 (475)
T TIGR00924 42 GLGFSQEQA-FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFK 120 (475)
T ss_pred CCCCCHHHH-HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhcccccc
Confidence 378899999 999999999999999999999999 899999999999999999888888888888889999999999988
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 95 LNHQLFMTALVVILM---ASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~---r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
+...++++|.+|+++ |++..+..+...++|..+++.+.+.+.
T Consensus 121 ~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~ 165 (475)
T TIGR00924 121 ANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA 165 (475)
T ss_pred CCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998753 777777888888888777766655543
No 71
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.41 E-value=7.2e-12 Score=98.01 Aligned_cols=138 Identities=11% Similarity=0.080 Sum_probs=96.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHH-H--HHhcCHHHHHHHHHHHHhhhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLL-M--AFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
.++++.+. ....+...++..++.++.|+++||+|||+.+..+.+...+.... . ...++...+.+++++.|++.+..
T Consensus 281 ~g~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 359 (490)
T PRK10642 281 LHYSEDHG-VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCF 359 (490)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 56677777 77778888999999999999999999999887776544333222 2 22345667778899999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh---------------------------hhccccCCcccccC
Q psy69 94 ELNHQLFMTALVVILMASLSAHS-VNMSIGMCQGFSAVL---------------------------LPQLHRESSHILVT 145 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~-~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~ 145 (157)
......++.|.+|++.|++..+. ++.+...+ .+++.+ ...+.||+++++.+
T Consensus 360 ~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g-~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~ 438 (490)
T PRK10642 360 TGVMASTLPAMFPTHIRYSALAAAFNISVLVA-GLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLK 438 (490)
T ss_pred HHHHHHHHHHHCCCccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 77888899999999999987774 44433221 122111 12234899998875
Q ss_pred C-----CChhhhhhcc
Q psy69 146 P-----GEASWIGKIS 156 (157)
Q Consensus 146 ~-----~~~~w~~~~~ 156 (157)
+ ++.++.+|++
T Consensus 439 ~~~~~~~~~~~a~~~l 454 (490)
T PRK10642 439 GATPAASDIQEAKEIL 454 (490)
T ss_pred CccccccchhhHHHHh
Confidence 4 7777766654
No 72
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.41 E-value=9.2e-12 Score=93.52 Aligned_cols=113 Identities=9% Similarity=-0.016 Sum_probs=87.3
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhh-hhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQV-ASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
++++.++.+. +++.+.+.+...+.+++.|.++||+||||.++. +.....++..+..++++++.+++.|++.|...+..
T Consensus 26 ~~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 104 (375)
T TIGR00899 26 EEVRARPAMI-GLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTA 104 (375)
T ss_pred cccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhh
Confidence 4578899999 999999999999999999999999999887654 45555666677788889998888999998887777
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q psy69 94 ELNHQLFMTALVVILMASLS--AHSVNMSIGMCQGFS 128 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~--~~~~~~~~~~~~~~~ 128 (157)
.+....+..|..|++.|.+. .+......++|..++
T Consensus 105 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig 141 (375)
T TIGR00899 105 NPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIG 141 (375)
T ss_pred HHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHh
Confidence 77788888898887776643 344443444444444
No 73
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.39 E-value=3.9e-12 Score=97.37 Aligned_cols=116 Identities=15% Similarity=0.065 Sum_probs=96.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH-----hcCHHHHHHHHHHHHhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF-----ADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~~g 91 (157)
.+.++.+. +++.+...++..+++++.|+++||+|||+.+..+..+.+++...... .++++.+.+.|++.|++.+
T Consensus 47 ~~~s~~~~-g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 125 (417)
T PRK10489 47 MTGSTLQV-GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGS 125 (417)
T ss_pred HHCCHHHH-HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 45688899 99999999999999999999999999999998887777666554332 4567888899999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
...+....++.|.+|+++|++..+..+....++..+++.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g 167 (417)
T PRK10489 126 LGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGG 167 (417)
T ss_pred HHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 888888899999999999999988877777666666655543
No 74
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.39 E-value=2.3e-12 Score=100.92 Aligned_cols=120 Identities=15% Similarity=0.061 Sum_probs=101.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH-hccchhhhhhhHHHHHHHHHHHHhcCHHH-HHHHHHHHHhhhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEV-WGRKTTLQVASIPFFFGWLLMAFADDVLQ-LCIGRFITGVAIGKS 93 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~-~grk~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~G~~~g~~ 93 (157)
+.+.++.+. .++.+.+.....+..+++|+++|| +|||++++.+.+++.++.+.+.++.+... +.++|+++|++.|..
T Consensus 44 ~lg~~~~~a-~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~ 122 (489)
T PRK10207 44 QLGFSQEQA-FITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLF 122 (489)
T ss_pred HcCCCHHHH-HHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccc
Confidence 467888888 899888888888888999999999 99999999999999999998888765444 457899999999999
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 94 ELNHQLFMTALVVILM--ASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
.+...+++.|.+|++. |.+..+..+...++|..+++.+.+++.
T Consensus 123 ~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~ 167 (489)
T PRK10207 123 KANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA 167 (489)
T ss_pred cCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998774 466677788888888888777666554
No 75
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.39 E-value=9.5e-12 Score=94.57 Aligned_cols=109 Identities=15% Similarity=0.089 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy69 24 VLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTA 103 (157)
Q Consensus 24 ~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~ 103 (157)
. +.+.+...++..+++++.|+++||+|||+.+..+.+...++..+..+.++++.+++.|++.|++.+ ..+....++.|
T Consensus 56 ~-g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~ 133 (408)
T PRK09874 56 S-GLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIAT 133 (408)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHH
Confidence 5 778888999999999999999999999999999998888888888888899999999999999765 45667788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy69 104 LVVILMASLSAHSVNMSIGMCQGFSAVLLPQ 134 (157)
Q Consensus 104 ~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 134 (157)
.+|+++|++..+..+....++..+++.+.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 164 (408)
T PRK09874 134 QVPRNKSGWALGTLSTGGVSGALLGPLAGGL 164 (408)
T ss_pred hcCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888877776666666555443
No 76
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.37 E-value=3.5e-12 Score=95.85 Aligned_cols=100 Identities=21% Similarity=0.293 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHH--------HHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy69 32 GVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVL--------QLCIGRFITGVAIGKSELNHQLFMTA 103 (157)
Q Consensus 32 ~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~~ 103 (157)
..++..+++++.|+++||+|||+.+..+.++..++..+..+++++. .+++.|++.|++.+...+....++.|
T Consensus 44 ~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~ 123 (394)
T TIGR00883 44 GFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAE 123 (394)
T ss_pred HHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhh
Confidence 3344457899999999999999999999999999999888888764 47789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 104 LVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 104 ~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
.+|+++|++..+..+.+..+|..+++.+
T Consensus 124 ~~~~~~r~~~~~~~~~~~~~G~~i~~~~ 151 (394)
T TIGR00883 124 YAPPGKRGFYGSFQQVGAPVGLLLAALT 151 (394)
T ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888887777776666544
No 77
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.36 E-value=6.5e-12 Score=106.63 Aligned_cols=116 Identities=10% Similarity=-0.024 Sum_probs=98.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHH---HhcCHHHHHHHHHHHHhhhhhhHHH
Q psy69 20 YKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMA---FADDVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 20 ~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
+.... +++.+++.++..++++++|+++||+|||++++++.++..+..++.. ..++++.++++|++.|++.+...+.
T Consensus 45 ~~~~~-~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 123 (1146)
T PRK08633 45 QVILT-AIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPA 123 (1146)
T ss_pred HHHHH-HHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchH
Confidence 34456 8889999999999999999999999999999888766555554433 3567899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 97 HQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 97 ~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
..+++.|++|+++|++..+.......+|..+++.+.+++.
T Consensus 124 ~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~ 163 (1146)
T PRK08633 124 KYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLF 163 (1146)
T ss_pred HHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888888888777766554
No 78
>PTZ00207 hypothetical protein; Provisional
Probab=99.35 E-value=3e-11 Score=96.03 Aligned_cols=110 Identities=14% Similarity=0.147 Sum_probs=94.5
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh------cCHHHHHHHHHHHHh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA------DDVLQLCIGRFITGV 88 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~G~ 88 (157)
+++++++.+. +++.+.. ....+..++.|++.||+|||+++.++.++..++.++++++ ++++.+++.|++.|+
T Consensus 55 ~~lgls~~~l-~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~ 132 (591)
T PTZ00207 55 ARYNLTQRDL-STITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTL 132 (591)
T ss_pred HHhCcCHHHH-HHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 4578899998 8887763 3344567789999999999999999999999999998886 588999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 89 AIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGF 127 (157)
Q Consensus 89 ~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~ 127 (157)
+.+...+.....+.+++| ++|++..+......++|..+
T Consensus 133 G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI 170 (591)
T PTZ00207 133 GCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAI 170 (591)
T ss_pred HHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHH
Confidence 999888888889999996 78899999888888887764
No 79
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.32 E-value=7.6e-11 Score=87.14 Aligned_cols=120 Identities=19% Similarity=0.175 Sum_probs=111.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccch-hhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKT-TLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
.+.++.+. +...+...++..++.++.+++.||+|||+ .+..+.....++.......++.+...+..++.|++.+...+
T Consensus 206 ~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 284 (352)
T cd06174 206 LGLSAAEA-GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFP 284 (352)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccch
Confidence 36788888 99999999999999999999999999999 99999999888888888888888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
....+++|..|+++|++..+..+....++..+++.+.+.+.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~ 326 (352)
T cd06174 285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326 (352)
T ss_pred hHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999888765
No 80
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.30 E-value=7.7e-11 Score=89.73 Aligned_cols=120 Identities=13% Similarity=0.071 Sum_probs=103.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
.+.++.+. +...+...++..++.++.|++.||+|||+.+........++.....+.++.+.+.+..++.|++.+..++.
T Consensus 250 ~g~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 328 (406)
T PRK11551 250 QGLSRSQA-GLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSV 328 (406)
T ss_pred CCCChhhh-hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHH
Confidence 46788888 89999999999999999999999999999988776666666665666677777777788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 97 HQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 97 ~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
...+.+|.+|+++|++..+..+....++..+++.+.+.+.+
T Consensus 329 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~ 369 (406)
T PRK11551 329 LYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA 369 (406)
T ss_pred HHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence 89999999999999999999999999999999999888765
No 81
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.30 E-value=8.4e-11 Score=87.87 Aligned_cols=120 Identities=12% Similarity=0.048 Sum_probs=101.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCH--HHHHHHHHHHHhhhhhhH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDV--LQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~~g~~~ 94 (157)
.+.++.+. +...+...++..+++++.|++.||+|||+.+..+.+...++.....+.++. ...+...++.|++.+...
T Consensus 235 ~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 313 (377)
T TIGR00890 235 LGLSDGFL-VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTI 313 (377)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccch
Confidence 56777888 888999999999999999999999999999988888888777766665533 234456778888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
+..+.+++|.+|+++|++..+..+....++..+++.+.+.+.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 356 (377)
T TIGR00890 314 SLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT 356 (377)
T ss_pred hccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888899999999999999999999999999999988877754
No 82
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.29 E-value=1.5e-10 Score=86.20 Aligned_cols=120 Identities=13% Similarity=0.018 Sum_probs=105.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcC-HHHHHHHHHHHHhhhhhhHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADD-VLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~ 95 (157)
.+.++.+. +.......++..++.++.+++.||++||+.+..+.....++.....+.++ .+...+..++.|++.+...+
T Consensus 242 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 320 (365)
T TIGR00900 242 LGRGSTHY-GWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINV 320 (365)
T ss_pred hCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence 56788888 99999999999999999999999999999988877777777666666664 77778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
....++.|.+|+++|++..+..+....++..+++.+.+.+.+
T Consensus 321 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 321 PQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988877654
No 83
>KOG0252|consensus
Probab=99.28 E-value=4.8e-12 Score=96.33 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=85.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc-------CHHHHHHHHHHHHhhh
Q psy69 18 IIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD-------DVLQLCIGRFITGVAI 90 (157)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~G~~~ 90 (157)
++++... +.+..+..+|.++|+++.|++.||+|||+++...+++++++.+++++.. -..++...|++.|+|.
T Consensus 80 ~~ps~i~-~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGI 158 (538)
T KOG0252|consen 80 HYPSGVL-ALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGI 158 (538)
T ss_pred cCCchHH-HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccc
Confidence 4666777 8899999999999999999999999999999999999999998776642 1467788999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy69 91 GKSELNHQLFMTALVVILMASLSAH 115 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~ 115 (157)
|+.++...+..+|..-.+.|+...+
T Consensus 159 GGDYPlSAtI~SE~an~~~RGa~ia 183 (538)
T KOG0252|consen 159 GGDYPLSATIMSESANKKTRGAFIA 183 (538)
T ss_pred cCCCcchHHHhhhhhhhccccceeE
Confidence 9999999999999999998877655
No 84
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.27 E-value=1.1e-11 Score=93.37 Aligned_cols=118 Identities=13% Similarity=0.073 Sum_probs=102.1
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD---DVLQLCIGRFITGVAIG 91 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~G~~~g 91 (157)
+++++|+.|. +++.++..+...+..++.|++.||+|.|+....+.++..+-++...++. +++.+++++++.|++.+
T Consensus 42 ~~~~LS~~q~-~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga 120 (417)
T COG2223 42 SDFGLSEGQK-GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA 120 (417)
T ss_pred cccCCCHHHH-HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccc
Confidence 6789999999 9999999999999999999999999999999999999888888888764 45699999999999866
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
. ++....++++++|+|++|.++++.+ ..++|..+..++.|.+
T Consensus 121 s-Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v 162 (417)
T COG2223 121 S-FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLV 162 (417)
T ss_pred e-ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHH
Confidence 5 7778899999999999999999888 6666666665555544
No 85
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.26 E-value=1.1e-10 Score=88.20 Aligned_cols=124 Identities=10% Similarity=0.020 Sum_probs=100.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHH-HHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWL-LMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+.+.++.+. +.+.+...++..++.++.+++.||+|||+.+..+.....+... .....++.+.+.+..++.++..+...
T Consensus 268 ~~g~s~~~~-~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (405)
T TIGR00891 268 DLGLSPHTV-ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIW 346 (405)
T ss_pred HhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccch
Confidence 357788888 9999999999999999999999999999988877665533332 22334455566666677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRESS 140 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (157)
+..+.+++|.+|++.|++..+..+....++..+++.+.+.+.+..+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 347 GILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred hhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7888999999999999999999988889999999999988877544
No 86
>TIGR00895 2A0115 benzoate transport.
Probab=99.23 E-value=3.7e-10 Score=85.06 Aligned_cols=118 Identities=11% Similarity=0.007 Sum_probs=95.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
.+.++.+. +...+...++..++.++.+++.||+|||+......+.......+.....+.+...+..++.|++.+...+.
T Consensus 280 ~g~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 358 (398)
T TIGR00895 280 LGFSLSLA-ATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSG 358 (398)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888 88899999999999999999999999995544433333333222233556777778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 97 HQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 97 ~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
...+++|.+|++.|++..+..+....++..+++.+.+.+
T Consensus 359 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 359 LYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 999999999999999999999998889999998887654
No 87
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.23 E-value=1.3e-11 Score=93.20 Aligned_cols=117 Identities=11% Similarity=0.020 Sum_probs=109.9
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++.++|..|. +.+.+.+.+.+.++-.+.|.++||.+.|..+-.++++.++..++++++++.+.+.++.++.|..+|...
T Consensus 57 e~~~lsk~~l-G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gw 135 (448)
T COG2271 57 EDGGLSKTQL-GILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGW 135 (448)
T ss_pred HhcCCCHHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC
Confidence 3456899999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
+.+...+..++|+++||+..+.++...++|.++.+.+.
T Consensus 136 pp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~ 173 (448)
T COG2271 136 PPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVA 173 (448)
T ss_pred cHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence 99999999999999999999999999998877776665
No 88
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.23 E-value=8.8e-11 Score=91.76 Aligned_cols=120 Identities=8% Similarity=0.015 Sum_probs=93.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh-ccchhhhhhhHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVW-GRKTTLQVASIPFFFGWLLMAFAD-DVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~-grk~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~g~~ 93 (157)
+.++++.+. +.+.+.+.....++++++|+++||+ |||++++++.++..++..+....+ +...+.+...+..++.|..
T Consensus 39 ~lgls~~~a-~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~ 117 (493)
T PRK15462 39 QLKYDDNHA-YELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLF 117 (493)
T ss_pred hcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccc
Confidence 367899999 9999999999999999999999999 999999999999888876665433 2233344444555666666
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 94 ELNHQLFMTALVVIL--MASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
.+...+++.|.+|++ .|.+..+..+...++|..+++.+.+++.
T Consensus 118 ~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~ 162 (493)
T PRK15462 118 KSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ 162 (493)
T ss_pred cccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 677788999999975 6877888888878888888877766664
No 89
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.23 E-value=2.8e-10 Score=85.29 Aligned_cols=119 Identities=10% Similarity=0.090 Sum_probs=92.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh-----ccchhh-hhhhHHHHHHHHHHHHh---cCHHHHHHHHHHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVW-----GRKTTL-QVASIPFFFGWLLMAFA---DDVLQLCIGRFIT 86 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~-----grk~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~ 86 (157)
+++++.++. ++..+. .+...+ .+++|+++||+ ||||.+ +.+.+...+......+. .+.+.+....++.
T Consensus 17 ~~g~s~~~~-g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~ 93 (356)
T TIGR00901 17 SKNVSLKTI-GFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLI 93 (356)
T ss_pred HcCCCHHHH-HHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence 468899999 888655 344444 89999999998 898874 56666666666566665 3555666677788
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 87 GVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 87 G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
+++.+...+...+++.|++|+|+|++..+....+..+|..+++.+...+.+
T Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~ 144 (356)
T TIGR00901 94 AFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLAS 144 (356)
T ss_pred HHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888899999999999999999999988888888888777655543
No 90
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.23 E-value=2e-10 Score=87.44 Aligned_cols=120 Identities=13% Similarity=0.011 Sum_probs=95.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
+++.++.+. +...+...+...++.++.|+++||+|||+.+..+.....+........++.+..++.+++.++..+...+
T Consensus 246 ~~~~~~~~~-g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~ 324 (393)
T PRK15011 246 ELHLPEKLA-GVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGG 324 (393)
T ss_pred HcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 467788888 8887777777888999999999999999987776655555444444566777777888888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
....+.+|..|+ .|++..+..+....+|..+++.+.+.+.+
T Consensus 325 ~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~ 365 (393)
T PRK15011 325 IGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAE 365 (393)
T ss_pred HHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888999985 48888888888888889999888887754
No 91
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.22 E-value=1.5e-10 Score=86.95 Aligned_cols=122 Identities=14% Similarity=0.040 Sum_probs=111.3
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHH---HhcCHHHHHHHHHHHHhhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMA---FADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~G~~~g 91 (157)
+.++++..|. +.++..++.|..+.+++.+++.+|+|+|+.++.+..++++++.+.. ...++..++++-++.|.|.+
T Consensus 41 ~~f~ls~~~a-~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~ 119 (422)
T COG0738 41 EVFDLTYFEA-SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIG 119 (422)
T ss_pred HHhCccHHHH-HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhH
Confidence 3478899999 9999999999999999999999999999999999999999998875 44678889999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
..++..+.|+..+.|++...+..+..+...++|..+++++...+..
T Consensus 120 ~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 120 LLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999888888888899999999999988777654
No 92
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.22 E-value=1.2e-10 Score=99.19 Aligned_cols=114 Identities=8% Similarity=-0.031 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhH---HHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHH
Q psy69 22 QQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASI---PFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQ 98 (157)
Q Consensus 22 ~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~ 98 (157)
... ++..+.+.+...+.+++.|+++||+|||+++..... ............++++.++++|+++|++.+...+...
T Consensus 52 ~~~-~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~ 130 (1140)
T PRK06814 52 ALV-TLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKY 130 (1140)
T ss_pred HHH-HHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHH
Confidence 345 777888999999999999999999999997543222 2222222223347899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 99 LFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 99 ~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
+++.|++|++.|++++++.+.+..++..+|+.+.+++.
T Consensus 131 a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~ 168 (1140)
T PRK06814 131 SILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT 168 (1140)
T ss_pred HhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888877776664
No 93
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.21 E-value=1.7e-10 Score=90.70 Aligned_cols=121 Identities=17% Similarity=0.081 Sum_probs=95.0
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH-hccchhhhhhhHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEV-WGRKTTLQVASIPFFFGWLLMAFAD-DVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~-~grk~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~g~ 92 (157)
+++|+++.+. ....+.+........+++|+++|| +|||+.++.+.+...++..++.+++ +...+.++|++.|++.|.
T Consensus 50 ~~lg~s~~~a-~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~ 128 (500)
T PRK09584 50 KQLGMSEADS-ITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGL 128 (500)
T ss_pred HHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhc
Confidence 3467888888 777777666666666789999999 5999999999999998888887764 456667889999999998
Q ss_pred hHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 93 SELNHQLFMTALVVILM--ASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
..+....++.|.+|++. |....+..+...++|..+++.+.+++.
T Consensus 129 ~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~ 174 (500)
T PRK09584 129 FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA 174 (500)
T ss_pred ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999998643 344566777777888777776666553
No 94
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.18 E-value=7.8e-10 Score=85.08 Aligned_cols=117 Identities=14% Similarity=0.176 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc----CHHHHHHHHHHHHhhhhhhHHH
Q psy69 21 KQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD----DVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 21 ~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
..+. +...+...++..++.++.+++.||+|||+.+..+.+...++..+..... +.+.+.+.+++.|++.+...+.
T Consensus 250 ~~~~-g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 250 VKNA-SIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhH-HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3566 7888888889999999999999999999999999988877766555532 2345667899999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccccC
Q psy69 97 HQLFMTALVVILMASLSAHSVN-MSIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 97 ~~~~~~~~~p~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 138 (157)
...++.|.+|++.|++..+..+ ...+++..+++.+.+.+.+.
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~ 371 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEK 371 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 8999999999999999999886 56788899999998887653
No 95
>PRK12382 putative transporter; Provisional
Probab=99.17 E-value=8e-10 Score=83.93 Aligned_cols=112 Identities=15% Similarity=0.001 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTALV 105 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~ 105 (157)
+.......++..++++..|++.||+|||+.+..+..+..++..+..+.++.+...++.++.|++.+...+.......|.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 331 (392)
T PRK12382 252 GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRV 331 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 45555677778889999999999999999998888888888777777778888888899999999888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 106 VILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 106 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
|+++|++..+..+....++..+++.+.+.+.+
T Consensus 332 ~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~ 363 (392)
T PRK12382 332 PSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT 363 (392)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888765
No 96
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.17 E-value=6.4e-10 Score=85.19 Aligned_cols=120 Identities=14% Similarity=0.014 Sum_probs=101.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
.+.++.+. +++.+...++..++.++.+++.||.++++.+..+.....++..+..+.++.+...++.++.|++.+...+.
T Consensus 254 ~g~~~~~~-g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 332 (417)
T PRK10489 254 WQMGAAQI-GLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLL 332 (417)
T ss_pred cCCChhHh-HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888 99999999999999999999999987777877777777777666666777777778888899988887778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 97 HQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 97 ~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
..++++|..|++.|++..+..+....++..+++.+.+.+.+
T Consensus 333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~ 373 (417)
T PRK10489 333 QYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA 373 (417)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence 88899999999999999999888888888888888777654
No 97
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.17 E-value=1.2e-09 Score=85.08 Aligned_cols=122 Identities=14% Similarity=0.061 Sum_probs=91.9
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHH--HHHhcCHHHHHHHHHHHHhhhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLL--MAFADDVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~G~~~g~ 92 (157)
+++|+++.+. ++..+...++..++.+..|+++||+|||+.+.........+..+ ....++.....+.+++.|+....
T Consensus 287 ~~~g~s~~~a-~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 365 (467)
T PRK09556 287 QELGFSKEDA-INTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFG 365 (467)
T ss_pred HccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Confidence 3467898898 89999999999999999999999999998766544433333222 22334566666778888865544
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcccc
Q psy69 93 SELNHQLFMTALVVILMASLSAHSVNMSIGM-CQGFSAVLLPQLHR 137 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 137 (157)
.......+..|.+|++.|+++.+..+....+ +..+++.+.+.+.+
T Consensus 366 ~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 366 PQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 4444456778999999999999999888775 66888888888876
No 98
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.16 E-value=1e-09 Score=83.33 Aligned_cols=120 Identities=9% Similarity=0.068 Sum_probs=108.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
.+.++.+. +.......++..+..+..+++.||+|+|+.+.++.+...+......+.++.+.+++...+.|++.+...+.
T Consensus 235 ~g~s~~~~-g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~ 313 (382)
T TIGR00902 235 AGISASAT-GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLA 313 (382)
T ss_pred CCCCHhHH-HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999 99988899999999999999999999999999999999999888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccccC
Q psy69 97 HQLFMTALVVILMASLSAHSVN-MSIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 97 ~~~~~~~~~p~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 138 (157)
...++++. |+++|++..+.++ ...+++..+++.+.+.+.+.
T Consensus 314 ~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~ 355 (382)
T TIGR00902 314 AMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT 355 (382)
T ss_pred HHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998 9999998888775 56788888999988888653
No 99
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.16 E-value=1.3e-09 Score=81.95 Aligned_cols=120 Identities=11% Similarity=0.016 Sum_probs=95.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
+.+.++.+. +...........++.++.|++.||+|||+.+.++.+...+......+.++.+...+.+.+.|++.+...+
T Consensus 229 ~~g~~~~~~-g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 307 (375)
T TIGR00899 229 ELGLPDKLA-GLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAG 307 (375)
T ss_pred HcCCCHHHH-HHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888 8877777777778889999999999999988877666555554555566777777788899999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
....+.+|..|++ +++..+..+....++..+++.+.+.+.+
T Consensus 308 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~ 348 (375)
T TIGR00899 308 IGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAE 348 (375)
T ss_pred HHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999998865 4588888888888899999888887754
No 100
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.15 E-value=1.4e-09 Score=82.80 Aligned_cols=112 Identities=16% Similarity=0.092 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTALV 105 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~ 105 (157)
+...+...++..++.+..+++.||+|||+.+..+.....++..+..+.++.+...+..++.|++.+..++.......|.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~ 331 (399)
T PRK05122 252 ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRV 331 (399)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence 45566777888899999999999999999988888877777777777778888888899999999988888778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 106 VILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 106 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
|+++|++..+..+....++..+++.+.+.+.+
T Consensus 332 ~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 363 (399)
T PRK05122 332 PPQNRGAALGAYSVFLDLSLGITGPLAGLVAS 363 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888887777666643
No 101
>KOG0253|consensus
Probab=99.15 E-value=6.6e-11 Score=88.34 Aligned_cols=135 Identities=13% Similarity=0.064 Sum_probs=106.4
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
..++.+..+. .+++.....|..+++..+|..+|++|||+.+.+......+..++...++++.+++++|.+.|+|.|+ .
T Consensus 106 ~~w~~s~~q~-~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~ 183 (528)
T KOG0253|consen 106 EVWGPSEGQA-PLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-L 183 (528)
T ss_pred hhhchhhhhh-hHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-c
Confidence 4477888888 9999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HhhhccccCCcccccCCCC
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSA--------------------------VLLPQLHRESSHILVTPGE 148 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~ 148 (157)
+...++-.|..|..+|..-+... ..+.+|..+.. .....+.||+|++++.+++
T Consensus 184 pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~ 262 (528)
T KOG0253|consen 184 PVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGD 262 (528)
T ss_pred cHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCC
Confidence 77777778888877766544333 33333322221 1123345999999988877
Q ss_pred hhhh
Q psy69 149 ASWI 152 (157)
Q Consensus 149 ~~w~ 152 (157)
...+
T Consensus 263 ~~kA 266 (528)
T KOG0253|consen 263 DYKA 266 (528)
T ss_pred hHHH
Confidence 6543
No 102
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.14 E-value=5.5e-10 Score=85.67 Aligned_cols=119 Identities=13% Similarity=0.063 Sum_probs=98.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHH
Q psy69 18 IIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNH 97 (157)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~ 97 (157)
+.+..+. +.+.+...++..++.++.|++.||+|||+.+..+.++..+...+..+.++.+.+.+.+.+.|++.+......
T Consensus 258 ~~~~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 336 (420)
T PRK09528 258 EQGTRVF-GYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV 336 (420)
T ss_pred CcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677 888888888899999999999999999999988888888887888888888888889999999988887888
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcccc
Q psy69 98 QLFMTALVVILMASLSAHS-VNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 98 ~~~~~~~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 137 (157)
..+++|.+|++.+++..+. .+....+|..+++.+.+++.+
T Consensus 337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~ 377 (420)
T PRK09528 337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD 377 (420)
T ss_pred HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999988876543 556667777777777766654
No 103
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.13 E-value=1.9e-09 Score=82.28 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=89.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh-----ccch-hhhhhhHHHHHHHHHHHHh---cCHHHHHHHHHHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVW-----GRKT-TLQVASIPFFFGWLLMAFA---DDVLQLCIGRFITG 87 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~-----grk~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G 87 (157)
.+++.++. +++...... .+..+++|+++||+ |||| .+..+.+..+++.....+. .+.+.+.+..++.+
T Consensus 29 ~g~~~~~i-g~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~ 105 (402)
T PRK11902 29 EGLDIQTI-GFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVA 105 (402)
T ss_pred cCCCHHHH-HHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 57899999 988776664 58899999999999 7776 6777777777777766665 34666777777788
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 88 VAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 88 ~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
+..+...+...+++.|++|+|+|++..+....+..++..++..+
T Consensus 106 ~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l 149 (402)
T PRK11902 106 FLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGL 149 (402)
T ss_pred HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHH
Confidence 88888888999999999999999999998888777666666543
No 104
>KOG2533|consensus
Probab=99.10 E-value=1.6e-09 Score=84.72 Aligned_cols=122 Identities=14% Similarity=0.037 Sum_probs=107.9
Q ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhh
Q psy69 13 YLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~ 92 (157)
.+++.+....+. +.+.+++.++.+++.++++.+.||+.-.+.+....+...+..++....+|++.+++.|++.|+..++
T Consensus 72 ~~edl~~~~~~l-~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~ 150 (495)
T KOG2533|consen 72 LKEDLKLVGNQL-GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESG 150 (495)
T ss_pred Cccccchhhhhh-hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcc
Confidence 344566777888 9999999999999999999999999977777777777777776777788999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 93 SELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
..+....++..++.+++|+...++++...++|..+|.++...+
T Consensus 151 ~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~ 193 (495)
T KOG2533|consen 151 GWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGV 193 (495)
T ss_pred cchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHh
Confidence 9999999999999999999999999998888888888877664
No 105
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.10 E-value=5.5e-10 Score=83.96 Aligned_cols=124 Identities=16% Similarity=0.119 Sum_probs=94.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHH--HHHHH--hcCHHHHHHHHHHHHhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGW--LLMAF--ADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~l~G~~~g 91 (157)
+.+.++.+. +.......++..++.++.++++||+|||+.+........+.. ....+ .++.+.......+.|++.+
T Consensus 249 ~~g~~~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 327 (394)
T TIGR00883 249 TLGLSANSA-LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGG 327 (394)
T ss_pred hcCCChhHH-HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 356788888 888888999999999999999999999998775544433322 12222 2456666677888899888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhccccCCc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHS-VNMSIGMCQGFSAVLLPQLHRESS 140 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 140 (157)
...+....+++|.+|++.|++..+. .+....++..+++.+.+.+.+..+
T Consensus 328 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 328 MYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred HHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 8889999999999999999988885 455566777788888877766443
No 106
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.10 E-value=2.3e-09 Score=83.38 Aligned_cols=121 Identities=12% Similarity=0.102 Sum_probs=101.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF----ADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~G~~~g 91 (157)
..+.++.+. ++......++..++.++.|++.||+|||+.+..+.....++..+..+ ..+.+......++.|++.+
T Consensus 285 ~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~ 363 (485)
T TIGR00711 285 VLGYTALQA-GLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMG 363 (485)
T ss_pred hcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHH
Confidence 357888899 99999999999999999999999999999988888887777766552 2345666677888999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
...........+..|+++|++..+..+....+|..+++.+.+.+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 364 CFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777888899999999999999999998998888887766653
No 107
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.09 E-value=3e-09 Score=83.44 Aligned_cols=119 Identities=9% Similarity=0.016 Sum_probs=100.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh---cCHHHHHHHHHHHHhhhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA---DDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~g~~ 93 (157)
++.++.+. +.......++..+++++.|++.||+|+|+.+..+.++..++....... ++.+......++.|++.+..
T Consensus 290 ~g~s~~~a-g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~ 368 (495)
T PRK14995 290 HGLSPLEA-GMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASA 368 (495)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHH
Confidence 57888999 999999999999999999999999999998888887777666554432 35556667888999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
.+.....+.+..|+++++...+..+....+|..+|+.+.+.+.
T Consensus 369 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~ 411 (495)
T PRK14995 369 LLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL 411 (495)
T ss_pred HHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999988888888877766654
No 108
>PRK09952 shikimate transporter; Provisional
Probab=99.07 E-value=5e-09 Score=81.03 Aligned_cols=120 Identities=10% Similarity=0.005 Sum_probs=86.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH---hcC-HHHHHHHHHHHHhhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF---ADD-VLQLCIGRFITGVAIGK 92 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~l~G~~~g~ 92 (157)
.+.++.+. ........+...++.++.|+++||+|||+.+..+.+...++...... ..+ ...+.+..++.+++.+.
T Consensus 281 ~g~s~~~~-~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (438)
T PRK09952 281 LGLPRELF-LNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDM 359 (438)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Confidence 45666655 55555666677888899999999999999988776655444332222 222 33444456667888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcccc
Q psy69 93 SELNHQLFMTALVVILMASLSAHSV-NMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 137 (157)
..+....++.|.+|++.|++..+.. +.+..++..+++.+.+.+.+
T Consensus 360 ~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~ 405 (438)
T PRK09952 360 VVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVT 405 (438)
T ss_pred HHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999998888864 44455778888888877755
No 109
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.06 E-value=2.1e-09 Score=83.93 Aligned_cols=121 Identities=7% Similarity=-0.072 Sum_probs=89.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh--cCHHHHHHHHHHHHhhhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA--DDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~g~~ 93 (157)
+.+.++.+. +...+...++..++.++.|+++||+|||+.+..+..+..+..+..... .+.+...+..++.+......
T Consensus 305 ~~g~~~~~~-g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (496)
T PRK03893 305 DLGYDPHTV-ANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGI 383 (496)
T ss_pred hcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhccc
Confidence 467888999 999999999999999999999999999999887766655544433322 22333334444444433334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
....+.+++|.+|++.|++..+..+....++..+++.+.+.+.+
T Consensus 384 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~ 427 (496)
T PRK03893 384 SGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ 427 (496)
T ss_pred chhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc
Confidence 56677899999999999999998877777777788777666554
No 110
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.05 E-value=7.5e-09 Score=81.27 Aligned_cols=114 Identities=13% Similarity=0.083 Sum_probs=87.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh-----ccchh-hhhhhHHHHHHHHHHHHh---cCHHHHHHHHHHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVW-----GRKTT-LQVASIPFFFGWLLMAFA---DDVLQLCIGRFITG 87 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~-----grk~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G 87 (157)
.+.+..+. +.. +...... +..+++++++||+ |||+. +..+.+...++....++. ++++.+.+.+++.+
T Consensus 42 ~g~~~~~i-g~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~ 118 (491)
T PRK11010 42 ENIDLKTI-GFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIA 118 (491)
T ss_pred CCCCHHHH-HHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 45677777 665 2222222 6899999999999 99886 556666666666666664 46778888999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 88 VAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 88 ~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
++.+.......++..|++|+++|++..+....+..+|..+++.+..
T Consensus 119 ~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~ 164 (491)
T PRK11010 119 FCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLAL 164 (491)
T ss_pred HHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999989999999999999999999998888877777666654433
No 111
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.05 E-value=3.6e-09 Score=83.52 Aligned_cols=120 Identities=17% Similarity=0.045 Sum_probs=104.5
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+..+.++... +++.+...+|..+|+++.+.+.+|+++++.+..+.+..+++.+..++.++.+..++..++.|++.....
T Consensus 247 ~~l~~~a~~y-Gll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~ 325 (524)
T PF05977_consen 247 DVLGGGASGY-GLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIAN 325 (524)
T ss_pred HHhCCcHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888 999999999999999999999999999999888888888888888999999988899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
....+.+++..|++.||+..+.+......+..+|.++.+.+
T Consensus 326 ~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~l 366 (524)
T PF05977_consen 326 SSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFL 366 (524)
T ss_pred HHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988777665666665554443
No 112
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.05 E-value=9.3e-09 Score=78.34 Aligned_cols=116 Identities=9% Similarity=0.005 Sum_probs=75.4
Q ss_pred CCcccccHHHHHHHHHHHHHH-HHHHHHHhHHHHHhHhccchhhh-hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVI-SNPLGALLSGTIMEVWGRKTTLQ-VASIPFFFGWLLMAFADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-g~~i~~~~~g~l~d~~grk~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g 91 (157)
.++++.++.+. ++..+...+ +..++.+..++ .||+|||+.++ .+.+...++..+..++++++.+++.+.+.+...+
T Consensus 43 ~~~~~~s~~~~-g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 120 (393)
T PRK15011 43 TDEVHARPAMV-GFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGS 120 (393)
T ss_pred HhhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34578899999 998766544 66666666666 99999998754 4455555666667778888887666555554455
Q ss_pred hhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Q psy69 92 KSELNHQLFMTALVVILMAS--LSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~--~~~~~~~~~~~~~~~~~~~~ 131 (157)
...+....+..|..+++.|. ...+..+.+..+|..+++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i 162 (393)
T PRK15011 121 TANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPL 162 (393)
T ss_pred hhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHH
Confidence 56677777778877665442 22345554555554444333
No 113
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.04 E-value=5.5e-09 Score=78.29 Aligned_cols=122 Identities=14% Similarity=0.068 Sum_probs=85.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhh-hhHHHHHH---HHHHHH----hcCHHHHHHHHHHHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQV-ASIPFFFG---WLLMAF----ADDVLQLCIGRFITG 87 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~-~~~~~~~~---~~~~~~----~~~~~~~~~~~~l~G 87 (157)
..+.++.+. ++..+...++..++.++.+++.||++||+.... .......+ ..+... .++.+.......+.+
T Consensus 245 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (399)
T TIGR00893 245 ERGLSILEA-GFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGF 323 (399)
T ss_pred HhcccHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 356788888 888999999999999999999999999962111 11111111 111111 123333333334444
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy69 88 VAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRES 139 (157)
Q Consensus 88 ~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
.+.+ ..+....+++|.+|+++|++..+..+....++..+++.+.+.+.+..
T Consensus 324 ~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~ 374 (399)
T TIGR00893 324 FGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT 374 (399)
T ss_pred hchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC
Confidence 4444 67888999999999999999999999999999999999988887643
No 114
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.02 E-value=8.6e-09 Score=78.15 Aligned_cols=118 Identities=15% Similarity=0.081 Sum_probs=93.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
.+.++.+. +...+...++..++++..|++.||+|+|+.+..+.....++..... + ........++.|++.....+.
T Consensus 230 ~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~ 305 (381)
T PRK03633 230 QGMSDASI-GFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPV 305 (381)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHH
Confidence 46788888 8888899999999999999999999999988877777666554332 2 223344667778777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy69 97 HQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 97 ~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (157)
...++.|..|+++++...+..+...++|..+++.+.+.+.+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~ 347 (381)
T PRK03633 306 AMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN 347 (381)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999988887777777788888999999988887653
No 115
>PRK03545 putative arabinose transporter; Provisional
Probab=99.01 E-value=9e-09 Score=78.21 Aligned_cols=119 Identities=16% Similarity=0.035 Sum_probs=91.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHH-HHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWL-LMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
..+.++.+. +...+...++..+++++.+++.||++||+... +......+.. .....++.+.+.++.++.|++.+...
T Consensus 235 ~~g~s~~~~-~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~ 312 (390)
T PRK03545 235 VAGLSENFA-TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIG 312 (390)
T ss_pred hcCCCccHH-HHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcch
Confidence 356788888 88888899999999999999999999886543 3333333333 33445667777778888899887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
.....++.|..| +.|++..+..+....+|..+|+.+.+.+.+
T Consensus 313 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~ 354 (390)
T PRK03545 313 LAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSL 354 (390)
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777788888866 578888888888888889999888888765
No 116
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.01 E-value=4e-09 Score=80.20 Aligned_cols=112 Identities=20% Similarity=0.076 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTALV 105 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~ 105 (157)
+.+.+...++..++.+..|++.||+|||+.+..+.....++.+...+.++.+.+.+.+++.|++.+...+....++.+..
T Consensus 261 g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 340 (408)
T PRK09874 261 GMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNS 340 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhC
Confidence 45555667788888999999999999999998888777777666666778888888999999999998888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 106 VILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 106 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
|++.|++..+..+....++..+++.+.+.+.+
T Consensus 341 ~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~ 372 (408)
T PRK09874 341 SNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA 372 (408)
T ss_pred CcccceeeehHHHHHHHHHHHhhHHHHHHHHh
Confidence 99999999998888888888888888777654
No 117
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.01 E-value=5.7e-09 Score=79.45 Aligned_cols=90 Identities=13% Similarity=0.062 Sum_probs=66.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHH---HHhc-----CHHHHHHHHHHHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLM---AFAD-----DVLQLCIGRFITG 87 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~l~G 87 (157)
+++.++.+. ++..+...+...+++++.|+++||+|||+.++.+.....+..... .+.+ .....++.+++.|
T Consensus 32 ~~g~s~~~~-g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 110 (396)
T TIGR00882 32 VNGLSKTDT-GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLG 110 (396)
T ss_pred hcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 467899999 999999999999999999999999999999987666554433221 1111 1233455678888
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q psy69 88 VAIGKSELNHQLFMTALVV 106 (157)
Q Consensus 88 ~~~g~~~~~~~~~~~~~~p 106 (157)
++.+...+....+..|..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~ 129 (396)
T TIGR00882 111 FVFSAGAGAIEAYIEKVSR 129 (396)
T ss_pred HHhccchhhHHHHHHHhhh
Confidence 8887777777777666543
No 118
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.00 E-value=1e-08 Score=79.70 Aligned_cols=122 Identities=15% Similarity=0.006 Sum_probs=98.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh--ccchhhhhh--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVW--GRKTTLQVA--SIPFFFGWLLMAFADDVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~--grk~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~ 92 (157)
.+.++.+. +...+...++..+++++.+++.||. ++|+...+. .+...++.++....++++.+.+.+++.|++.+.
T Consensus 271 ~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~ 349 (455)
T TIGR00892 271 KGVDEYEA-AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGS 349 (455)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhch
Confidence 57788888 9999999999999999999999973 334333332 233334444455677888888899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy69 93 SELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRES 139 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
..+.....+.|.+|++++++..+..+....++..+++.+.+.+.+..
T Consensus 350 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~ 396 (455)
T TIGR00892 350 VGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT 396 (455)
T ss_pred HHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc
Confidence 88999999999999999999999999999999999999988876643
No 119
>PRK03699 putative transporter; Provisional
Probab=99.00 E-value=6.1e-09 Score=79.35 Aligned_cols=120 Identities=9% Similarity=-0.064 Sum_probs=94.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
.+++++.+. +...+.+.++..++.+..++++||++||+.+........+...+....++.....+..++.|++.+..++
T Consensus 235 ~~g~s~~~~-~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 313 (394)
T PRK03699 235 KFGMSLEDA-GNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYT 313 (394)
T ss_pred HcCCChHHh-hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 467888888 9999999999999999999999999999988877766666555555666776667777888988887778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
....+..|..|.+ +++..+.......+|..+++.+.+.+.+
T Consensus 314 ~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~ 354 (394)
T PRK03699 314 TIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVA 354 (394)
T ss_pred HHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 7777878877543 4556666666677888888888877765
No 120
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.00 E-value=6.2e-09 Score=78.03 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=84.5
Q ss_pred ccccHHHHHHHHHHHHH-HHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh-----------cCHHHHHHHHH
Q psy69 17 RIIYKQQVLFVAASLGV-ISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA-----------DDVLQLCIGRF 84 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~-~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 84 (157)
.+.++.+. +.+..... ++..++.++++++.||+|||+.+..+.++..+...+..+. ++.+.+..+.+
T Consensus 239 ~g~~~~~~-g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (356)
T TIGR00901 239 MGFSKEEI-ALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTIT 317 (356)
T ss_pred cCCCHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHH
Confidence 67788888 87776655 5778999999999999999999888887777665544432 34566677888
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 85 ITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSI 121 (157)
Q Consensus 85 l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~ 121 (157)
+.+++.+...+...++++|.+|+|+|++..+..+...
T Consensus 318 l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 354 (356)
T TIGR00901 318 LEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS 354 (356)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 8999999999999999999999999999998776544
No 121
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.99 E-value=1.6e-08 Score=76.69 Aligned_cols=121 Identities=16% Similarity=0.107 Sum_probs=99.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
+.+.++.+. +...+...++..+...+.+++.||+|+|+.+..+.....+........++.+.+++..++.|++.+...+
T Consensus 234 ~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 312 (382)
T PRK11128 234 AAGYSASTI-GYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHL 312 (382)
T ss_pred HCCCCHhHH-HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 357788888 8888888888899999999999999999999988888888777777788888888899999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccccC
Q psy69 96 NHQLFMTALVVILMASLSAHSVN-MSIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 138 (157)
....+..+. +++++++..+..+ ...+.|..+++.+.+.+.+.
T Consensus 313 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~ 355 (382)
T PRK11128 313 AAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH 355 (382)
T ss_pred HHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888887 4555677777665 55567778888888877653
No 122
>PRK15075 citrate-proton symporter; Provisional
Probab=98.99 E-value=5e-09 Score=80.84 Aligned_cols=121 Identities=10% Similarity=0.082 Sum_probs=84.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHH-HH-HH--hcCHHHHHHHHHHHHhhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWL-LM-AF--ADDVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~-~~-~~--~~~~~~~~~~~~l~G~~~g~ 92 (157)
.++++.+. ++......++..+++++.|+++||+|||+.+..+.....+... .. .. .++.....+...+.+++.+.
T Consensus 269 ~g~~~~~~-~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 347 (434)
T PRK15075 269 LHLSAADS-LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGS 347 (434)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 56788888 8888888899999999999999999999987765544332221 11 11 22333444445556677776
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccccC
Q psy69 93 SELNHQLFMTALVVILMASLSAHSV-NMSIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 138 (157)
..+....++.|.+|++.|++..+.. +.+..++..+++.+.+.+.+.
T Consensus 348 ~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~ 394 (434)
T PRK15075 348 YNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV 394 (434)
T ss_pred HHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 6666778899999999999988864 434444466677777666553
No 123
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.99 E-value=1.5e-08 Score=80.10 Aligned_cols=112 Identities=16% Similarity=0.120 Sum_probs=91.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhhhhhh
Q psy69 19 IYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA-----DDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 19 ~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~g~~ 93 (157)
-|+... ++++....+-.++.+++.|.++||+.||++++.+.+...+......+. .+.+.+++.-++.|++....
T Consensus 42 ~S~~~v-alv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~ 120 (524)
T PF05977_consen 42 GSPLMV-ALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFF 120 (524)
T ss_pred CCHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH
Confidence 466777 888999999999999999999999999999999988876655443321 36788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
.+...+.+.|.+|+++...+++......++...+|+.+
T Consensus 121 ~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPal 158 (524)
T PF05977_consen 121 NPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPAL 158 (524)
T ss_pred HHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchH
Confidence 99999999999999998888887777666554444433
No 124
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.96 E-value=2.3e-08 Score=76.66 Aligned_cols=119 Identities=13% Similarity=0.048 Sum_probs=83.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHh--hhhhhH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGV--AIGKSE 94 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~--~~g~~~ 94 (157)
.+.++.+. +...+...++..++.++.+++.||+|||+.+..+.+...+........++.......-.+.|+ ...+..
T Consensus 261 ~g~~~~~~-~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (426)
T PRK12307 261 EGFDTGVV-SNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVG 339 (426)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHh
Confidence 46777888 888888899999999999999999999998888776665554443332221112222233333 222334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
...+.++.|.+|++.|++..+.......++..+++.+.+.+.
T Consensus 340 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~ 381 (426)
T PRK12307 340 GLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLG 381 (426)
T ss_pred HHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 556788899999999999999877777777777777665554
No 125
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.96 E-value=2e-08 Score=78.56 Aligned_cols=124 Identities=15% Similarity=0.132 Sum_probs=107.5
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccc--hhhhhhhHHHHHHHHHHHH--------hcCHHHHHHHHH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRK--TTLQVASIPFFFGWLLMAF--------ADDVLQLCIGRF 84 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 84 (157)
++.+++..+. ..+.....+..++|+++.|++.||+|.| ++++.+.+...+..+...+ .++.+.+++.-+
T Consensus 310 ~~lg~s~~~l-~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~ 388 (477)
T PF11700_consen 310 EVLGMSTTQL-IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAV 388 (477)
T ss_pred HhcCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHH
Confidence 4578898888 8888889999999999999999999999 8888877777666555555 567788899999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy69 85 ITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRES 139 (157)
Q Consensus 85 l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
+.|+..|..++...++.+|+.|+++.+...+.+.+.--....+||++.+.+...+
T Consensus 389 ~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t 443 (477)
T PF11700_consen 389 LIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT 443 (477)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988888889988888776544
No 126
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.96 E-value=2.8e-08 Score=74.51 Aligned_cols=123 Identities=11% Similarity=0.002 Sum_probs=91.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh-ccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVW-GRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~-grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
.+.++.+. +...+...++..++++..|++.||+ +||+.+..+.....++.....+.++.... ....+.|++.+..++
T Consensus 227 ~g~~~~~~-g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~g~~~~ 304 (355)
T TIGR00896 227 HGASAATA-GSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLW-AWALVLGLGQGGAFP 304 (355)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHhhhhHhH
Confidence 47788888 9999999999999999999999999 46666666666666666555554433222 245678999988887
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcc
Q psy69 96 NHQLFMTALV-VILMASLSAHSVNMSIGMCQGFSAVLLPQLHRESSH 141 (157)
Q Consensus 96 ~~~~~~~~~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (157)
.....+.+.. ++++++...+..+....++..+++.+.+.+.+..+.
T Consensus 305 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 305 LALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7767666554 466778888877777777788888888888765544
No 127
>PRK10504 putative transporter; Provisional
Probab=98.96 E-value=2.4e-08 Score=77.60 Aligned_cols=120 Identities=10% Similarity=-0.006 Sum_probs=96.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh---cCHHHHHHHHHHHHhhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA---DDVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~g~ 92 (157)
..+.++.+. ++......++..++.++.+++.||+|||+.+..+.....+...+..+. ++.+...+..++.|++.+.
T Consensus 291 ~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 369 (471)
T PRK10504 291 GLGFSPFHA-GLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNST 369 (471)
T ss_pred HcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 356788888 888888888888888999999999999999988888777776655543 2333344566778888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 93 SELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
..+.......+.+|+|.++...+..+....+|..+|+.+.+.+.
T Consensus 370 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll 413 (471)
T PRK10504 370 RFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLL 413 (471)
T ss_pred HHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999988888888888877766554
No 128
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.95 E-value=9.2e-09 Score=80.28 Aligned_cols=117 Identities=17% Similarity=0.144 Sum_probs=88.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHh----Hhccchhhhhh-hHHHHHHHHHHHHhcCHH-------------
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIME----VWGRKTTLQVA-SIPFFFGWLLMAFADDVL------------- 77 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d----~~grk~~~~~~-~~~~~~~~~~~~~~~~~~------------- 77 (157)
..++++.+. +.+.....+...+.+++.|+++| |+|||+.++.. .....++..+..++++..
T Consensus 33 ~lg~~~~~~-~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~ 111 (477)
T TIGR01301 33 ELGIPHAWA-SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKP 111 (477)
T ss_pred HcCCCHHHH-HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchh
Confidence 367888999 99999999999999999999999 59999998775 455555555666655432
Q ss_pred ----HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhh
Q psy69 78 ----QLCIGRFITGVAIGKSELNHQLFMTALVVILMA--SLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 78 ----~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r--~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
..+++..+..++....+....+++.|.+|+++| +.+.++.+...++|..++..+..
T Consensus 112 ~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~ 173 (477)
T TIGR01301 112 RAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGA 173 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223334455567777888899999999998865 46777777777777777766554
No 129
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.95 E-value=8.1e-09 Score=82.18 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTALV 105 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~ 105 (157)
.|+.+...++..++.++.|.++|.+|||..++.+.++..++.++++.++|...++++..+.|++.|... .....++|..
T Consensus 81 ~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~ 159 (599)
T PF06609_consen 81 SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELV 159 (599)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhc
Confidence 688888999999999999999999999999999999999999999999999999999999999987765 4456689999
Q ss_pred HHHHHHHHHH
Q psy69 106 VILMASLSAH 115 (157)
Q Consensus 106 p~~~r~~~~~ 115 (157)
|.+.|.....
T Consensus 160 p~k~R~~~~~ 169 (599)
T PF06609_consen 160 PNKWRGLGLA 169 (599)
T ss_pred ccchhhhHhH
Confidence 9998876554
No 130
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.95 E-value=1.3e-08 Score=77.15 Aligned_cols=112 Identities=11% Similarity=0.012 Sum_probs=77.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccc----hhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRK----TTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~ 92 (157)
.+.+..+. ++..+.+.++..+++++.|++.||+||| +.+.+.... .........++++.+++.|++.|++.+.
T Consensus 34 ~g~s~~~i-G~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~l~g~~~~~ 110 (382)
T PRK11128 34 QGYTPETI-GLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL--FAVAFWFGAHSFWLLFVAIGLFNLFFSP 110 (382)
T ss_pred cCCCHHHH-HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH--HHHHHHHhcccHHHHHHHHHHHHHHHcc
Confidence 67899999 9999999999999999999999999994 332222111 1122233357888888999999999888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 93 SELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
..+...++..++. ++|++..+.......+|..+++.+..
T Consensus 111 ~~~~~~a~~~~~~--~~~~~a~~~~~~~~~lg~~igp~lgg 149 (382)
T PRK11128 111 LVPLTDALANTWQ--KQIGLDYGKVRLWGSIAFVIGSALTG 149 (382)
T ss_pred cccHHHHHHHHHH--hhccCCcchHHHHHHHHHHHHHHHHH
Confidence 8887777777663 44555544444444555555544443
No 131
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=98.94 E-value=1.8e-08 Score=76.48 Aligned_cols=117 Identities=9% Similarity=-0.079 Sum_probs=85.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhH-HHHHHH-HHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASI-PFFFGW-LLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
+.+.+..+. +++.+.+.+...+++++.+.++||+||++....... ...+.. .....+++++.+++.|.+.|.+.+..
T Consensus 33 ~~g~s~~~i-g~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~ 111 (382)
T TIGR00902 33 GIGLGEEMI-GLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIGLFALFFSAG 111 (382)
T ss_pred HcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHccc
Confidence 468899999 999999999999999999999999998543322111 111122 23345678999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
.+....+..|. .++|++..+......++|..+++.+...+
T Consensus 112 ~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l 151 (382)
T TIGR00902 112 MPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGL 151 (382)
T ss_pred hhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 88877777654 46677777777777777777766554333
No 132
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.94 E-value=9.5e-09 Score=78.89 Aligned_cols=134 Identities=10% Similarity=0.070 Sum_probs=86.9
Q ss_pred ccccccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhh-hhhhHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy69 8 LPIFCYLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTL-QVASIPFFFGWLLMAFADDVLQLCIGRFIT 86 (157)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (157)
.|.+..+...+.++.+. +.......++..++.+..|+++||++||+.. ........++..+....++......+-.+.
T Consensus 265 ~p~~l~~~~~~~s~~~~-~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (412)
T TIGR02332 265 TPQILQSFNQGSSNIMI-GLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMA 343 (412)
T ss_pred HHHHHHhcCCCCcHHHh-HHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34444332345677788 8888999999999999999999999977743 333333333322222222322222222223
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCccc
Q psy69 87 GVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRESSHI 142 (157)
Q Consensus 87 G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (157)
+++.....+.......|.+|++.|++..+..+....++..+++.+.+.+.+..+.|
T Consensus 344 ~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~ 399 (412)
T TIGR02332 344 SMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSF 399 (412)
T ss_pred HHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCC
Confidence 33333323334455567899999999999999999999999999998887765544
No 133
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.94 E-value=7.3e-09 Score=78.52 Aligned_cols=123 Identities=14% Similarity=0.199 Sum_probs=108.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
++|++..+. ..+.....+..++++++.|++.||+|.|+++..+.++..+.++...+......++++..+.|...|+.++
T Consensus 282 ~~gls~~~l-ll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA 360 (438)
T COG2270 282 DLGLSSTEL-LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQA 360 (438)
T ss_pred HcCccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHH
Confidence 578899999 8999999999999999999999999999999999999988888877777777778888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRES 139 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
...+|..+.+|+++-++..+.+++.-.....+++.....+.+-+
T Consensus 361 ~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iT 404 (438)
T COG2270 361 SSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQIT 404 (438)
T ss_pred HHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999998999888888777888877776665433
No 134
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.92 E-value=4.9e-08 Score=75.00 Aligned_cols=117 Identities=14% Similarity=0.184 Sum_probs=94.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh-cCHHHHHHHHHHHHhhhhhhHHHHH
Q psy69 20 YKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA-DDVLQLCIGRFITGVAIGKSELNHQ 98 (157)
Q Consensus 20 ~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~ 98 (157)
++.+. +.......++..++.++.++++||+|+|+.+..+..+.+++.....+. ++.+...+..++.|++.+..++...
T Consensus 255 ~~~~~-~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 333 (437)
T TIGR00792 255 DPELF-SYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVW 333 (437)
T ss_pred ChHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556 677777889999999999999999999999998888877776666554 3556667778889999999899999
Q ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 99 LFMTALVV-------ILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 99 ~~~~~~~p-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
++++|..+ ++.++...+..+....++..+++.+.+.+.+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 334 ALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred HHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999876 3456888888888888899999888777754
No 135
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.91 E-value=1e-08 Score=76.06 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=94.5
Q ss_pred Cccccc-HHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH---hcCHHHHHHHHHHHHhhh
Q psy69 15 DRRIIY-KQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF---ADDVLQLCIGRFITGVAI 90 (157)
Q Consensus 15 ~~~~~~-~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~G~~~ 90 (157)
+.++.+ ..+. +...+...++..++.++.+++.||+++|+..........+....... .++....+...++.|++.
T Consensus 235 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 313 (352)
T PF07690_consen 235 EVLGFSGPSQA-GLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGF 313 (352)
T ss_dssp HHHHCCTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHH
T ss_pred hccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 446677 7888 88899999999999999999999999988777766666665555443 335566777888899999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSA 129 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~ 129 (157)
+...+....++.|.+|+++|++..+..+...+++..++|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 314 GIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999998888888775
No 136
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.91 E-value=5.2e-08 Score=74.47 Aligned_cols=120 Identities=9% Similarity=-0.006 Sum_probs=88.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhh-hhhHHHHHHHHHHHH-----hcCHHHHHHHHHHHHhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQ-VASIPFFFGWLLMAF-----ADDVLQLCIGRFITGVAI 90 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~~ 90 (157)
.+.++.+. +...+...++..++++..|+++||+|||+... .+.+...+....... .++.+...++.++.|++.
T Consensus 252 ~g~s~~~~-~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~ 330 (402)
T TIGR00897 252 LGFSTSEW-LQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFL 330 (402)
T ss_pred cCCChhHH-HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 57788888 88888889999999999999999999988754 223333333222221 235666677888888888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRES 139 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
+...+ ......|. ++++|++..+..+....++..+++.+.+.+.++.
T Consensus 331 ~~~~~-~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~ 377 (402)
T TIGR00897 331 AGYVP-LAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF 377 (402)
T ss_pred HHHHH-HHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77544 44556665 4568999999999999999999999988887643
No 137
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.90 E-value=7.6e-09 Score=79.48 Aligned_cols=113 Identities=14% Similarity=0.116 Sum_probs=87.1
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH----hccch-hhhhhhHHHHHHHHHHHHhcC------HHHHHHHH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEV----WGRKT-TLQVASIPFFFGWLLMAFADD------VLQLCIGR 83 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~----~grk~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 83 (157)
+..++++.+. +.+.++..+...+..++.|+++|| +|||| .++.+....+++..+....++ ..+..+.+
T Consensus 28 ~~~g~s~~~~-g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 106 (437)
T TIGR00792 28 DVLGLSAAFV-GTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITY 106 (437)
T ss_pred HccCCCHHHH-HHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 4578999999 999999999999999999999998 67755 566676777777666655443 34566678
Q ss_pred HHHHhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy69 84 FITGVAIGKSELNHQLFMTALV-VILMASLSAHSVNMSIGMCQGFS 128 (157)
Q Consensus 84 ~l~G~~~g~~~~~~~~~~~~~~-p~~~r~~~~~~~~~~~~~~~~~~ 128 (157)
++.+++.+.......++..|.. ++++|++..+..+....+|..++
T Consensus 107 ~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~ 152 (437)
T TIGR00792 107 ILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLV 152 (437)
T ss_pred HHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887777788888887 47889888887776665554443
No 138
>TIGR00898 2A0119 cation transport protein.
Probab=98.90 E-value=3.5e-08 Score=77.37 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCH--HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy69 31 LGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDV--LQLCIGRFITGVAIGKSELNHQLFMTALVVIL 108 (157)
Q Consensus 31 ~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~ 108 (157)
...+...++.++.+++.||+|||+.+..+.++.+++.++..+.++. +...+..++.+++.+..+.....+.+|.+|++
T Consensus 363 ~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 442 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV 442 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 3445566788899999999999999999888888887777665543 44555566677777777888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 109 MASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 109 ~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
.|++..+..+....+|..+++.+..
T Consensus 443 ~r~~~~g~~~~~~~ig~~i~p~i~~ 467 (505)
T TIGR00898 443 VRNLGVGVCSTMARVGSIISPFLVY 467 (505)
T ss_pred HHhhhHhHHHHHHHHHHHHHhHHHH
Confidence 9999999888888888888877655
No 139
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.88 E-value=2.4e-08 Score=76.90 Aligned_cols=85 Identities=12% Similarity=-0.008 Sum_probs=70.4
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhcc-chhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGR-KTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~gr-k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
++.|++..+. +++.+...++..+++++.|.++||+|| |+.+..+.+...+......+.++++.+.+.|++.|++.+..
T Consensus 31 ~~~g~s~~~i-Gl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (418)
T TIGR00889 31 KTLHFSGAEI-GWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPT 109 (418)
T ss_pred HhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccH
Confidence 3478899999 999999999999999999999999965 77777777777777777778888999999999999977665
Q ss_pred HHHHHHH
Q psy69 94 ELNHQLF 100 (157)
Q Consensus 94 ~~~~~~~ 100 (157)
.+...+.
T Consensus 110 ~~~~~~l 116 (418)
T TIGR00889 110 IALTNSI 116 (418)
T ss_pred HHHHHHH
Confidence 5554444
No 140
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.88 E-value=6.7e-08 Score=73.80 Aligned_cols=123 Identities=12% Similarity=0.014 Sum_probs=94.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA-----DDVLQLCIGRFITGVAI 90 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~ 90 (157)
+.+.++.+. ++......++..++.++.+++.||+++|+.+..+.+...++..+.... .+.+++.+..++.|++.
T Consensus 245 ~~g~~~~~~-g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~ 323 (406)
T PRK15402 245 GEQLSSYEY-GLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGI 323 (406)
T ss_pred HhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHH
Confidence 356788888 888777778889999999999999999999888877766666555432 24566677888899988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCc
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRESS 140 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (157)
+...+........ .++++|++..+..+.....+..+|+.+...+.+..+
T Consensus 324 ~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 372 (406)
T PRK15402 324 GLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG 372 (406)
T ss_pred HHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 8776666555543 345889999999999888888899888877765433
No 141
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.87 E-value=2.7e-08 Score=76.48 Aligned_cols=120 Identities=6% Similarity=0.023 Sum_probs=86.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH---h--cC-----HHHHHHHHHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF---A--DD-----VLQLCIGRFIT 86 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~---~--~~-----~~~~~~~~~l~ 86 (157)
.+.+..+. +.......++..++.++.++++||+|||+.+..+..+..++..+..+ . ++ ....+....+.
T Consensus 314 ~g~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (481)
T TIGR00879 314 AGVSTDHA-FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLF 392 (481)
T ss_pred cCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHH
Confidence 45666677 77888888899999999999999999999988887777766655542 1 11 22222222222
Q ss_pred Hhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 87 GVAIG-KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 87 G~~~g-~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
+.+.+ ...+....++.|.+|++.|++..+..+....++..+++.+.+.+.+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~ 444 (481)
T TIGR00879 393 IAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE 444 (481)
T ss_pred HHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 2335566778999999999999999999888888888887776654
No 142
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.87 E-value=3.8e-08 Score=76.50 Aligned_cols=118 Identities=9% Similarity=0.063 Sum_probs=82.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh--cCH--HHHHHHHHHHHhhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA--DDV--LQLCIGRFITGVAIGK 92 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~l~G~~~g~ 92 (157)
.+.+..+. .+......+...++.++.+++.||+|||+.++.+.+..+++.++.... .+. .....+.++.+.+.+.
T Consensus 301 ~g~~~~~~-~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (479)
T PRK10077 301 LGASTDIA-LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAM 379 (479)
T ss_pred cCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhc
Confidence 34554455 555666777888999999999999999999999998888877665432 121 1222333444444433
Q ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 93 S-ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 93 ~-~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
. .+....+++|.+|+++|++..+..+....++..+++.+.|.+
T Consensus 380 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~ 423 (479)
T PRK10077 380 SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMM 423 (479)
T ss_pred cccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 2 356789999999999999999988777777776665555533
No 143
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.86 E-value=7.9e-08 Score=73.33 Aligned_cols=120 Identities=16% Similarity=0.058 Sum_probs=90.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhhhhhHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD-DVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~g~~~~ 95 (157)
.+.++.+. +...+...++..++.+..+++.||++||+....+..+..++..+....+ +.... ...+.|++.+...+
T Consensus 235 ~g~s~~~a-g~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~ 311 (393)
T PRK09705 235 IGASAQYS-GSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFP 311 (393)
T ss_pred cCCChhhh-hHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHH
Confidence 57888888 9999999999999999999999999999998888777666655444323 22222 23456777777777
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy69 96 NHQLFMTALVV-ILMASLSAHSVNMSIGMCQGFSAVLLPQLHRES 139 (157)
Q Consensus 96 ~~~~~~~~~~p-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
.......+..+ ++++++..+..+....++..+++.+.+++.+..
T Consensus 312 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~ 356 (393)
T PRK09705 312 LCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS 356 (393)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77667677774 678999998888877777888888777776543
No 144
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.86 E-value=2.3e-08 Score=85.25 Aligned_cols=114 Identities=12% Similarity=0.054 Sum_probs=95.9
Q ss_pred ccccHH-HHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 17 RIIYKQ-QVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 17 ~~~~~~-~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
.+.+.. +. +++.+...++.++++++.+++.||+++++.+.++.+..+++.++..+..+.+..+++.++.|++.+...+
T Consensus 263 ~g~s~~~~~-g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 341 (1146)
T PRK08633 263 LGLDNTFQV-QYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIV 341 (1146)
T ss_pred hCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Confidence 567777 88 8999999999999999999999999999988888887777777777777888888888999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
...+++.+.+|++.|++..+..+....++..+++.+
T Consensus 342 ~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~ 377 (1146)
T PRK08633 342 PLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLAL 377 (1146)
T ss_pred HHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHH
Confidence 899999999999999999887777666555444333
No 145
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.84 E-value=5.7e-08 Score=74.57 Aligned_cols=50 Identities=16% Similarity=-0.036 Sum_probs=43.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFG 66 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~ 66 (157)
++|+++.+. +.+.+...++..+++++.|+++||+|||+.++++.....+.
T Consensus 40 ~~g~s~~~~-g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 89 (420)
T PRK09528 40 INGLSGTDT-GIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVL 89 (420)
T ss_pred hcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 478899999 99999999999999999999999999999987765554433
No 146
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.84 E-value=7.1e-08 Score=74.41 Aligned_cols=116 Identities=7% Similarity=-0.067 Sum_probs=73.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHH--H--hcCHHHHHHHHHHHHhhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMA--F--ADDVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~l~G~~~g~ 92 (157)
.+.+..+. +...+...++..++.++.|+++||+|||+.+........+...... . ..+....+..-.+.++..+.
T Consensus 274 ~g~s~~~~-~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (432)
T PRK10406 274 AGMHANVA-SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSF 352 (432)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 56777788 8888887788888899999999999999987766554333322111 1 12232222222222233334
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhh
Q psy69 93 SELNHQLFMTALVVILMASLSAHSVNMSIG-MCQGFSAVLLP 133 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~-~~~~~~~~~~~ 133 (157)
.......+.+|.+|++.|++..+..+.... +.....+.+..
T Consensus 353 ~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~ 394 (432)
T PRK10406 353 YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL 394 (432)
T ss_pred HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH
Confidence 445567889999999999999997665433 32334444444
No 147
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.83 E-value=3.7e-08 Score=74.99 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=94.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHH
Q psy69 18 IIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNH 97 (157)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~ 97 (157)
+.+..+. +...+...+...++.+..+++.||+|||+.+.++..+.++...+....++.+.+.+.+++.|++........
T Consensus 250 ~~~~~~~-g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 328 (396)
T TIGR00882 250 QQGTRVF-GYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGC 328 (396)
T ss_pred ccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566 777888888888899999999999999999998888888877776777888888888999998877766666
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcccc
Q psy69 98 QLFMTALVVILMASLSAHS-VNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 98 ~~~~~~~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 137 (157)
..+..+..|++.+++..+. .+....+|..+++.+.+++.+
T Consensus 329 ~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~ 369 (396)
T TIGR00882 329 FKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD 369 (396)
T ss_pred HHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH
Confidence 6677777777777665554 566778888888888777765
No 148
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.82 E-value=9.2e-08 Score=71.43 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=106.3
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
+++.+++.+.. +.++++..+...+.+++..++++|+|.++.+..+.++.+++..+-... +.+.++.+-.+.|.+.+..
T Consensus 39 r~~~gls~s~a-GlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~ 116 (395)
T COG2807 39 RQDLGLSFSVA-GLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVI 116 (395)
T ss_pred HHHhcccHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHH
Confidence 35588999999 999999999999999999999999999999999999999998887765 7788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRES 139 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
+...+.++.+.+|++.. ..++.+....+++.++++.+.+.+..+.
T Consensus 117 nVLLPslIK~~Fpk~~~-~mtglYs~sl~~~aaLaa~lavpla~~~ 161 (395)
T COG2807 117 NVLLPSLIKRDFPKRVG-LMTGLYSTSLGAGAALAAALAVPLAQHS 161 (395)
T ss_pred HHhhhHHHHhhcccchh-hHHhHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 99999999999987764 4777888888888888777666555433
No 149
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.82 E-value=7.5e-08 Score=72.01 Aligned_cols=121 Identities=16% Similarity=0.084 Sum_probs=86.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhcc-chhhhhhh-HH-HHHHHHHHHH--hcCHHHHHHHHHHHHhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGR-KTTLQVAS-IP-FFFGWLLMAF--ADDVLQLCIGRFITGVAI 90 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~gr-k~~~~~~~-~~-~~~~~~~~~~--~~~~~~~~~~~~l~G~~~ 90 (157)
..+.++.+. +...+...++..++.++.+++.||..+ |+...... .. ...+...... ..+.....+..++.|...
T Consensus 246 ~~g~~~~~~-~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 324 (379)
T TIGR00881 246 EKGFSKEKA-SWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLV 324 (379)
T ss_pred HhCCCHHHH-HHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHH
Confidence 356788888 899999999999999999999998643 33222211 11 1111111112 224445556667777766
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
.........+.+|.+|++.|++..+..+....++..+++.+.+.+.+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 371 (379)
T TIGR00881 325 YGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD 371 (379)
T ss_pred hhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 66666677889999999999999999999999999999988888765
No 150
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.78 E-value=1.9e-07 Score=70.26 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=84.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA-----DDVLQLCIGRFITGVAI 90 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~ 90 (157)
+.+.++.+. +...+...++..++.++.+++.||+|||+.+..+.....++..+.... ++........++.|++.
T Consensus 236 ~~g~~~~~~-g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 314 (385)
T TIGR00710 236 IMGVSPSVF-GLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGN 314 (385)
T ss_pred HcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 466788888 999999999999999999999999999998888777766665554432 22334455677788888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGM-CQGFSAV 130 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~-~~~~~~~ 130 (157)
+...+....+..|..| +.+++..+..+..... +...++.
T Consensus 315 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~ 354 (385)
T TIGR00710 315 SMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYL 354 (385)
T ss_pred HHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888876 5788888876655443 4444443
No 151
>PRK09848 glucuronide transporter; Provisional
Probab=98.78 E-value=5.1e-07 Score=69.99 Aligned_cols=120 Identities=11% Similarity=0.037 Sum_probs=91.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc--CHHHHHHHHHHHHhhhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD--DVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~ 93 (157)
.++.++... .+......++..++.++.+++.||+|+|+.+..+.++..++.+...+.+ +.+...+..++.|++.+..
T Consensus 258 ~~g~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~ 336 (448)
T PRK09848 258 VLNDTGLFT-VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVT 336 (448)
T ss_pred ecCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence 355555544 4444444677888999999999999999999999888777776666543 4566666788899999999
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 94 ELNHQLFMTALVVILM-------ASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~-------r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
.+...+..+|..|.++ ++...+..+....+|.++++.+.+.+.
T Consensus 337 ~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 337 MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988653 477777888888888888877766554
No 152
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.77 E-value=1.3e-07 Score=72.15 Aligned_cols=119 Identities=16% Similarity=0.022 Sum_probs=91.6
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+..|.++.+. +...+...++..++++..+++.||.++|+.+..+. ...+......+.++++...+..++.|++.+...
T Consensus 234 ~~lg~s~~~~-G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~ 311 (393)
T PRK11195 234 VALGITLNQP-AYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFFV 311 (393)
T ss_pred HHcCCChhHH-HHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Confidence 3467888899 99999999999999999999999999888777664 333334444556667766777888999988888
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 95 LNHQLFMTALVVILM-ASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
+...+.++|..|+|. +++..+..+....++..++..+...+
T Consensus 312 ~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 312 VPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred hhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 888888888766655 78888888887777777776555433
No 153
>KOG2504|consensus
Probab=98.77 E-value=2.8e-08 Score=78.28 Aligned_cols=114 Identities=18% Similarity=0.139 Sum_probs=95.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHH-HHHHHHhhhhhhH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCI-GRFITGVAIGKSE 94 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~G~~~g~~~ 94 (157)
+++.+..+. +|+.++......+..++.+.+.||+|.|++.+.+.++..++.++..++++.+.+++ .-++.|+|.+..+
T Consensus 75 ~f~~s~~~~-~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~ 153 (509)
T KOG2504|consen 75 YFGSSSSQI-AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIY 153 (509)
T ss_pred HhCCCccHH-HHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhh
Confidence 356677778 99999999999999999999999999999999999999999999999999988776 5788999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
......+..++ ++.|+.++++...+.++|..+-+.+
T Consensus 154 ~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l 189 (509)
T KOG2504|consen 154 LPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPL 189 (509)
T ss_pred cchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHH
Confidence 88888877555 6677888887777666554443333
No 154
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.74 E-value=3.6e-07 Score=69.80 Aligned_cols=119 Identities=13% Similarity=-0.001 Sum_probs=88.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHH-HHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIP-FFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+.+.++.+. +.......++..++.++.+++.||.+ |+.++..... ......+....++.+.+.+..++.|++.+...
T Consensus 246 ~~g~s~~~~-g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~ 323 (394)
T PRK10213 246 LAGFGVDGL-TLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVP 323 (394)
T ss_pred hcCCChhHH-HHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Confidence 457888888 88899999999999999999999954 4443433333 33333444455667777778899999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
+...+++++..|+ .+++..+.......++..+|+.+.+.+.+
T Consensus 324 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~ 365 (394)
T PRK10213 324 VGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYALD 365 (394)
T ss_pred HHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888899998874 45556666666777888888888888765
No 155
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.74 E-value=3.8e-07 Score=70.47 Aligned_cols=122 Identities=10% Similarity=-0.032 Sum_probs=81.2
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhc--cchhh-hhhhHHHHHHHHHHH--HhcCHHHHHHHHHHHHhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWG--RKTTL-QVASIPFFFGWLLMA--FADDVLQLCIGRFITGVA 89 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~g--rk~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~G~~ 89 (157)
++.+++..+. +...+...++..++.++.|+++||+. +|+.. ....+...+...... ...+.....+..+..|++
T Consensus 272 ~~~g~s~~~a-~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 350 (434)
T PRK11663 272 ETLGVDLVTA-NSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFF 350 (434)
T ss_pred hccCCCHHHH-HHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence 3467888888 88999999999999999999999983 33322 221111111111111 122333333344445544
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 90 IGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 90 ~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
.............|.+|++.|++..+..+....+|..+++.+.+.+.+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~ 398 (434)
T PRK11663 351 VFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLE 398 (434)
T ss_pred HhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 333333445677899999999999999999999999999888887765
No 156
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.72 E-value=5.8e-07 Score=66.69 Aligned_cols=118 Identities=8% Similarity=-0.091 Sum_probs=89.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
.+++++.+. +...+.+..+..+|.++.+++.||+|+|+.+.++..+..++..+....++.. .....++.|++.+..++
T Consensus 172 ~~g~s~~~a-~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~g~~~s~i~P 249 (310)
T TIGR01272 172 ALGLPEDQA-AHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYV-AMWFVLALGLFNSIMFP 249 (310)
T ss_pred cCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHH
Confidence 467899999 9999999999999999999999999999988887777766665554444433 23456688999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
...+...+..|++. +++.+.. ....+|..+.|.+.+.+.+
T Consensus 250 ~~~s~a~~~~~~~~-~~asai~-~~~~~Gg~i~P~l~G~lad 289 (310)
T TIGR01272 250 TIFSLALNALGRHT-SQGSGIL-CLAIVGGAIVPLLQGSLAD 289 (310)
T ss_pred HHHHHHHhhhhhhh-hhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence 99999888887653 3444543 3344677777777777655
No 157
>PRK10133 L-fucose transporter; Provisional
Probab=98.72 E-value=1.4e-07 Score=73.19 Aligned_cols=120 Identities=8% Similarity=-0.042 Sum_probs=91.1
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
++..++++.+. +.....+.++..++++..+++.||+|||+++..+..+..+...+..+.++. ..+....+.|++.+..
T Consensus 287 ~~~~g~s~~~a-g~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i 364 (438)
T PRK10133 287 EEIPGMTAGFA-ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQ 364 (438)
T ss_pred hhcCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHH
Confidence 45578999999 999999999999999999999999999999888776666555555554443 2345677899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
++...+...|..|++ .+.+.+...... ++..+++.+.+.+.+
T Consensus 365 ~P~~~s~a~~~~~~~-~~~as~l~~~~~-~g~~~~~~i~G~l~~ 406 (438)
T PRK10133 365 YPTIFSLGIKNLGQD-TKYGSSFIVMTI-IGGGIVTPVMGFVSD 406 (438)
T ss_pred HHHHHHHHHcccchh-hccchhHHhHHh-ccchHHHHHHHHHHH
Confidence 999999999988765 445555554333 456666666666644
No 158
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.71 E-value=2e-07 Score=73.37 Aligned_cols=107 Identities=11% Similarity=-0.017 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc----CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy69 31 LGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD----DVLQLCIGRFITGVAIGKSELNHQLFMTALVV 106 (157)
Q Consensus 31 ~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p 106 (157)
...++..++.++.+++.||+|||+.++.+..+..++..+..+.. +...+...-+...+......+....+.+|.+|
T Consensus 343 ~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p 422 (502)
T TIGR00887 343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFP 422 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCc
Confidence 34456667889999999999999998888777666655544321 11111111111111112234456678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 107 ILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 107 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
++.|++..+..+....++..+++.+.+.+.+
T Consensus 423 ~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~ 453 (502)
T TIGR00887 423 TRYRSTAHGISAASGKAGAIIGQFGFLYLAQ 453 (502)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHhhhhhc
Confidence 9999999999998888888888888877754
No 159
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.71 E-value=5.1e-07 Score=67.48 Aligned_cols=86 Identities=17% Similarity=0.260 Sum_probs=75.8
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+++++++.|+ +.+.........+...+.|.++||+|||+.-+...++..++++ +-..+++..++++|++.|++....+
T Consensus 62 ~~yg~~~~qI-a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLf 139 (354)
T PF05631_consen 62 ESYGFSEHQI-AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLF 139 (354)
T ss_pred HHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHH
Confidence 4578899999 9999999999999999999999999999998888888888885 4446889999999999999999999
Q ss_pred HHHHHHHH
Q psy69 95 LNHQLFMT 102 (157)
Q Consensus 95 ~~~~~~~~ 102 (157)
..-.+|..
T Consensus 140 S~FEsW~V 147 (354)
T PF05631_consen 140 SAFESWMV 147 (354)
T ss_pred HHHHHHHH
Confidence 88887654
No 160
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.70 E-value=7.7e-07 Score=59.55 Aligned_cols=116 Identities=11% Similarity=0.037 Sum_probs=91.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHH
Q psy69 18 IIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNH 97 (157)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~ 97 (157)
++++..- ..-.++......+++++.+.+.+++|.|+.++++.+...+-.. ..+-++.+.++.+-++.|++.+..+...
T Consensus 33 ~i~~~~G-~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~-~~~~~~~~~l~~~s~l~G~~~a~lW~aq 110 (156)
T PF05978_consen 33 SISAGLG-YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIA-SFFYPNSYTLYPASALLGFGAALLWTAQ 110 (156)
T ss_pred ccccccc-HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHhhhhHHhhHhh
Confidence 3444333 3445666677788889999999999999999999888775443 3356678888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 98 QLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 98 ~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
..++.+..+++.+++..+........+..+|.++.-.+
T Consensus 111 g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 111 GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877777777777776665444
No 161
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.69 E-value=6.9e-07 Score=69.39 Aligned_cols=120 Identities=12% Similarity=-0.032 Sum_probs=75.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh--ccchhhh-hhhHHHHHHHHHHHH--hcCHHHHHHHHHHHHhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVW--GRKTTLQ-VASIPFFFGWLLMAF--ADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~--grk~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~G~~~g 91 (157)
.+++..+. +.......++..++.++.|+++||+ +||+... ....+..++...... ..+.....++.++.|....
T Consensus 284 ~g~s~~~~-~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 362 (452)
T PRK11273 284 KHFALDKS-SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIY 362 (452)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Confidence 56777788 8888888899999999999999999 4454322 222222222222222 2244444445555555443
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcccc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGF-SAVLLPQLHR 137 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 137 (157)
........+..|.+|++.|++..+..+....++..+ ++.+.+.+.+
T Consensus 363 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~ 409 (452)
T PRK11273 363 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 409 (452)
T ss_pred hHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 333334557789999999999999887766665443 5666555543
No 162
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.68 E-value=1.9e-07 Score=71.47 Aligned_cols=118 Identities=7% Similarity=-0.087 Sum_probs=92.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHh-HhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHH
Q psy69 20 YKQQVLFVAASLGVISNPLGALLSGTIME-VWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQ 98 (157)
Q Consensus 20 ~~~~~~~~~~~~~~~g~~i~~~~~g~l~d-~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~ 98 (157)
++.+. ++..+...++........+...| |++.++.+..+..+..++..+..+.++.+.+.+...+.+++.+...+...
T Consensus 241 ~~~~~-g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~ 319 (400)
T PRK11646 241 SPSAV-KWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARE 319 (400)
T ss_pred CchHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHH
Confidence 55667 77777766666555555555555 56666666777777777776677777777777778888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy69 99 LFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 99 ~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (157)
+++.|..|++.|++..+..+....++..+++.+.+.+.+.
T Consensus 320 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 320 TLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred HHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 9999999999999999999999999999999998888654
No 163
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.68 E-value=1.5e-07 Score=80.54 Aligned_cols=120 Identities=13% Similarity=-0.021 Sum_probs=95.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh--------------------cC
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA--------------------DD 75 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~--------------------~~ 75 (157)
.++.++.+. +++.+...++..++.+..|++.|+.++++.+..+.+...+..+...+. .+
T Consensus 255 ~~g~~~~~~-g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1140)
T PRK06814 255 TLGGDENVA-TLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRH 333 (1140)
T ss_pred HcCCchHHH-HHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccc
Confidence 357788888 999999999999999999999988877766555555544444333332 56
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 76 VLQLCIGRFITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 76 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
.+.+++..++.|++.+.......+++++.+|++.|++..+..+....++..+++++...+.
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 334 GWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788889999999999999999999999999999999888888877777776655553
No 164
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.68 E-value=3.3e-07 Score=69.72 Aligned_cols=122 Identities=18% Similarity=0.110 Sum_probs=96.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh--ccchhhhhhhH-HHHHHHHHHHHhc--CHHHHHHHHHHHHhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVW--GRKTTLQVASI-PFFFGWLLMAFAD--DVLQLCIGRFITGVAI 90 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~--grk~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~ 90 (157)
..|++..++ .+..+.+-++...|++++|+++||+ |||...-+... ...++....-.++ ++....++.++.|+..
T Consensus 282 ~k~~s~~~a-~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~I 360 (448)
T COG2271 282 VKGFSLVKA-NWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLI 360 (448)
T ss_pred hcCCCHHHH-HHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 567899999 9999999999999999999999994 66655443333 3333333333344 5688888999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccccC
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGM-CQGFSAVLLPQLHRE 138 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 138 (157)
-+.+........|..|++-.|++.+..+....+ |..++....+.+.+.
T Consensus 361 yGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~ 409 (448)
T COG2271 361 YGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT 409 (448)
T ss_pred hhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec
Confidence 888888889999999999999999999988877 788887777777554
No 165
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.68 E-value=7.4e-07 Score=67.76 Aligned_cols=120 Identities=10% Similarity=-0.121 Sum_probs=88.2
Q ss_pred ccccHHHHHHHHHHHHH-HHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH------hcCHHHHHHHHHHHHhh
Q psy69 17 RIIYKQQVLFVAASLGV-ISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF------ADDVLQLCIGRFITGVA 89 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~-~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~G~~ 89 (157)
.+.++.+. +....... ....++.++.|++.||+|+|+.+..+............. .++....+....+.++.
T Consensus 238 ~G~s~~~i-g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (390)
T TIGR02718 238 AGWPLEWI-GRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLI 316 (390)
T ss_pred cCCCHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHH
Confidence 57899998 88877665 467788999999999999999988766554333222211 12333444445556666
Q ss_pred hhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 90 IGKSELNHQLFMTALVVI-LMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 90 ~g~~~~~~~~~~~~~~p~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
.+...+.......+..++ +.+++..+..+...+++..+++.+.+.+.+
T Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~ 365 (390)
T TIGR02718 317 TGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD 365 (390)
T ss_pred HHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777887788776 888999999998889999999998887765
No 166
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=98.67 E-value=2.2e-08 Score=77.37 Aligned_cols=119 Identities=16% Similarity=0.067 Sum_probs=95.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH-hccchhhhhhhHHHHHHHHHHHHh--cCHHHHHHHHHHHHhhhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEV-WGRKTTLQVASIPFFFGWLLMAFA--DDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~-~grk~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~g~~ 93 (157)
.++|++++ .-..+.+..-.-+..+++||++|| +|+|+++..+.+++.++.++.+.. .+...+.++.++.++|.|..
T Consensus 56 Lg~~~~~A-~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~ 134 (498)
T COG3104 56 LGFDETHA-TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLF 134 (498)
T ss_pred CCcChHhh-HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccc
Confidence 56888888 777777777777889999999999 799999999999999999998877 37888889999999999999
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 94 ELNHQLFMTALVVILM--ASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
-+...+++.|.+|++. |-...+.++++.++|..+++.+.+++.
T Consensus 135 K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~ 179 (498)
T COG3104 135 KPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLA 179 (498)
T ss_pred cccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHH
Confidence 9999999999999774 333344555555666666555555443
No 167
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.66 E-value=5.5e-07 Score=68.35 Aligned_cols=119 Identities=13% Similarity=0.057 Sum_probs=84.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHH-HhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMA-FADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
.|.++.+. +...+...++..++.++.+++.||+|+|+.+..+..+..++..+.. ..++.+...+..++.+.+.....+
T Consensus 230 ~g~s~~~~-~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 308 (382)
T PRK10091 230 SGFSETSM-TFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSA 308 (382)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhH
Confidence 57788888 9999999999999999999999999999998888877777665544 344555555566666666554443
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy69 96 NHQ-LFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 96 ~~~-~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (157)
... ....+..|++.++... .+....+|..+|+.+.+.+.+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~ 350 (382)
T PRK10091 309 PLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTL 350 (382)
T ss_pred HHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHc
Confidence 333 3344444555555443 3456678888888888777653
No 168
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.64 E-value=7.2e-07 Score=70.16 Aligned_cols=115 Identities=11% Similarity=0.092 Sum_probs=77.5
Q ss_pred cccccHHHHHHHHHH-HHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHH---HHh-cCHHHHHHHHHHHHhhh
Q psy69 16 RRIIYKQQVLFVAAS-LGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLM---AFA-DDVLQLCIGRFITGVAI 90 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~-~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l~G~~~ 90 (157)
+.|+++.+. +.... ...++..++.++.|+++||+|+|+.+....+...+..... ... ++...+....++..+..
T Consensus 252 ~~G~s~~~~-g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~ 330 (491)
T PRK11010 252 GVGFDAGEV-GLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCG 330 (491)
T ss_pred hcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 467899999 88874 5668999999999999999999887776555444433222 222 34444444555555555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
+.......++..+..+++.+++..+..+....++..+++.+
T Consensus 331 g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~ 371 (491)
T PRK11010 331 GMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPV 371 (491)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 55556667888888888877777776666656554444333
No 169
>KOG2325|consensus
Probab=98.60 E-value=2.6e-07 Score=71.80 Aligned_cols=119 Identities=13% Similarity=0.117 Sum_probs=99.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhcc-chhhhhhhHHHHHHHHHH-HHh---c-CHHHHHHHHHHHHhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGR-KTTLQVASIPFFFGWLLM-AFA---D-DVLQLCIGRFITGVAI 90 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~gr-k~~~~~~~~~~~~~~~~~-~~~---~-~~~~~~~~~~l~G~~~ 90 (157)
.+-+.+.. |++.++..++..++++..|+...|.++ |+.++.+.++..+++.+. ... + ..+.++++|++.|+|.
T Consensus 66 ~~A~~~ff-G~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~ 144 (488)
T KOG2325|consen 66 PTATATFF-GLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV 144 (488)
T ss_pred CCCCcchh-hHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc
Confidence 45666777 999999999999999999999999886 778888899999998876 332 3 5678889999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
+. ....-.|+++....+.|.++......+..++..+|+.+.+.+.+
T Consensus 145 ~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~ 190 (488)
T KOG2325|consen 145 GN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP 190 (488)
T ss_pred cc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence 76 67888999998888888888888888777788888877776665
No 170
>PRK09669 putative symporter YagG; Provisional
Probab=98.59 E-value=3.9e-07 Score=70.57 Aligned_cols=115 Identities=12% Similarity=0.018 Sum_probs=84.3
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH----hccchh-hhhhhHHHHHHHHHHHHhcC------HHHHHHHH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEV----WGRKTT-LQVASIPFFFGWLLMAFADD------VLQLCIGR 83 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~----~grk~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 83 (157)
+..++++.+. +.+.++.-+...+..++.|+++|| +||||. ++++.+..+++..+....++ ..+.++..
T Consensus 38 ~~~gls~~~~-g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~ 116 (444)
T PRK09669 38 DVFGLSAAIM-GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTY 116 (444)
T ss_pred HhcCCCHHHH-HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 5578999999 999999999999999999999999 777555 45565666666554443332 34555666
Q ss_pred HHHHhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 84 FITGVAIGKSELNHQLFMTALV-VILMASLSAHSVNMSIGMCQGFSAV 130 (157)
Q Consensus 84 ~l~G~~~g~~~~~~~~~~~~~~-p~~~r~~~~~~~~~~~~~~~~~~~~ 130 (157)
.+.+.+.........++..|+. ++++|.+..+.......+|..+++.
T Consensus 117 ~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~ 164 (444)
T PRK09669 117 ILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSV 164 (444)
T ss_pred HHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777888999988 5677887777666666655555543
No 171
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.58 E-value=2.2e-06 Score=61.37 Aligned_cols=113 Identities=20% Similarity=0.267 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcC--HHHHHHHHHHHHhhhhhhHHHHHH
Q psy69 22 QQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADD--VLQLCIGRFITGVAIGKSELNHQL 99 (157)
Q Consensus 22 ~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~G~~~g~~~~~~~~ 99 (157)
.+. ++..+...++..++.++.|.+.||+|||+.+..+......+.....+..+ ...+.+.|...|++.+...+....
T Consensus 39 ~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 117 (338)
T COG0477 39 LLY-GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASA 117 (338)
T ss_pred HHH-HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 356 78888899999999999999999999998877777655555556666655 788888999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHhhhcc
Q psy69 100 FMTALVVI-LMASLSAHSVNM-SIGMCQGFSAVLLPQL 135 (157)
Q Consensus 100 ~~~~~~p~-~~r~~~~~~~~~-~~~~~~~~~~~~~~~~ 135 (157)
++.|..|+ +.|+...+.... ...++..+++.+...+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T COG0477 118 LLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLL 155 (338)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 667777776655 4555666665444433
No 172
>KOG2504|consensus
Probab=98.56 E-value=9.5e-07 Score=69.73 Aligned_cols=127 Identities=13% Similarity=0.082 Sum_probs=111.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhc--cchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWG--RKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~g--rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
..++++.+. +...++..+...++.+..|+++|+.. ++....++.+..+++.....+.++++.++..-.+.|+..|..
T Consensus 327 ~~g~~~~~a-a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~ 405 (509)
T KOG2504|consen 327 SLGLSSNDA-AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSF 405 (509)
T ss_pred hcCCChhhh-HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 467899999 99999999999999999999999977 344556666777777777888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccc
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRESSHIL 143 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (157)
.......+.|+.+.+.-..+.+......+++..+|+.+.+.+.+.+..|.
T Consensus 406 ~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~ 455 (509)
T KOG2504|consen 406 SSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYD 455 (509)
T ss_pred HHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCee
Confidence 99998999999999999999999999999999999998888877666553
No 173
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.56 E-value=4.6e-07 Score=69.89 Aligned_cols=114 Identities=14% Similarity=0.191 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc--CHHHHHHHHHHHHhhhhhhHHHHHH
Q psy69 22 QQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD--DVLQLCIGRFITGVAIGKSELNHQL 99 (157)
Q Consensus 22 ~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~ 99 (157)
... +.......++..++.++.++++||+|+|+.+..+..+.+++.++..+.+ +.+..++..++.|++.+..+....+
T Consensus 260 ~~~-~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a 338 (428)
T PF13347_consen 260 GLI-SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWA 338 (428)
T ss_pred hhh-HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhccccccccc
Confidence 445 6777788899999999999999999999999999999999988877765 8899999999999999999999999
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 100 FMTALVVILM-------ASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 100 ~~~~~~p~~~-------r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
+++|..+.++ .|...+..+....++.+++..+.+.+.
T Consensus 339 ~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 339 MLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL 382 (428)
T ss_pred ccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 9999988553 355566677777777888877766554
No 174
>PRK10054 putative transporter; Provisional
Probab=98.55 E-value=3.7e-07 Score=69.76 Aligned_cols=120 Identities=8% Similarity=0.001 Sum_probs=91.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh-cCHHHHHHHHHHHHhhhhhhHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA-DDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
.+.++... +.+.....+......+..|.+.||+++|+.+..+..+..++.....+. ++.+.+.+...+.|++.+...+
T Consensus 239 ~~~~~~~~-g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p 317 (395)
T PRK10054 239 SDFAEKVV-AVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAP 317 (395)
T ss_pred cchHHHHH-HHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566 667777766666777888999999999999888887777776666554 4666667788899999888778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (157)
....++.+..|++.|++..+..+ ...+|..+|+.+.+.+.+.
T Consensus 318 ~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~ 359 (395)
T PRK10054 318 GEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTT 359 (395)
T ss_pred hHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 88889999999999988876544 3446777887777776653
No 175
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.54 E-value=1.4e-06 Score=66.36 Aligned_cols=120 Identities=16% Similarity=0.092 Sum_probs=92.4
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh-cCHHHHHHHHHHHHhhhhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA-DDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~g~~ 93 (157)
+..++++... +++...+.++..+|+.+.|+++|| +.|+.+.....+.++......+. .+.+..++.-++.|+.....
T Consensus 240 ~v~g~s~~~v-s~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~ 317 (394)
T COG2814 240 SVAGFSVSAV-SLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPA 317 (394)
T ss_pred HccCCCHhHH-HHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhh
Confidence 3467788899 999999999999999999999999 88888888877777777766654 45555566667777777765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
........++ ..++.+....+.+...+++|...|..+.+...+
T Consensus 318 ~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~ 360 (394)
T COG2814 318 LQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLD 360 (394)
T ss_pred hhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555 336777778888888888888888887776655
No 176
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.54 E-value=1.4e-06 Score=62.69 Aligned_cols=108 Identities=16% Similarity=0.157 Sum_probs=84.4
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh-------cCHHHHHHHHHHH
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA-------DDVLQLCIGRFIT 86 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~ 86 (157)
++..|+|+.|. ..+.+...+|..+ .++.|.+.|++|.+.++.++.+...++....... .+++.+.+..++.
T Consensus 29 k~~l~~sq~~l-~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~ 106 (250)
T PF06813_consen 29 KSRLGYSQSQL-NTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLG 106 (250)
T ss_pred HHHhCCCHHHH-HHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHH
Confidence 35688999999 9999999999987 4888999999999999999999988888765542 2566777777788
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 87 GVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMC 124 (157)
Q Consensus 87 G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~ 124 (157)
|.+....+.....-..+.+| ++||++.+..-...+++
T Consensus 107 ~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLS 143 (250)
T PF06813_consen 107 GNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLS 143 (250)
T ss_pred cccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhH
Confidence 77776666666666668887 57888877655555543
No 177
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.53 E-value=3.2e-06 Score=63.73 Aligned_cols=114 Identities=12% Similarity=0.032 Sum_probs=76.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHH---HH-hcCHHHHHHHHHHHHhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLM---AF-ADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~l~G~~~g 91 (157)
..+.++.+. +.......++..++.++.+++.||+|||+.+..+.....+..... .. ..+.+...++..+.+.+.+
T Consensus 224 ~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (377)
T PRK11102 224 LNGVSPQNF-GYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVS 302 (377)
T ss_pred HhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 357788889 999999999999999999999999999999888776544433222 11 2244444444444454455
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNM-SIGMCQGFSAVL 131 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~-~~~~~~~~~~~~ 131 (157)
........++.|..| +.+++..+..+. ..+++..+++.+
T Consensus 303 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 303 MISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 545555566777766 778877775544 334555555544
No 178
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.52 E-value=4.8e-07 Score=70.85 Aligned_cols=114 Identities=8% Similarity=-0.082 Sum_probs=71.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccch-------hhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKT-------TLQVASIPFFFGWLLMAFADDVLQLCIGRFITGV 88 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~ 88 (157)
+.++++.+. +...+...++..++.++.|+++||++||+ .......+..+...+....++.+...+..++.++
T Consensus 282 ~~g~s~~~a-~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~ 360 (476)
T PLN00028 282 RFGLSLETA-GAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSI 360 (476)
T ss_pred hcCCCHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 367888888 99999999999999999999999998762 2222222222222333334455555555566666
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 89 AIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 89 ~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
+.+........++.+..| +.++...+..+....+|..+++.+
T Consensus 361 ~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l 402 (476)
T PLN00028 361 FVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLL 402 (476)
T ss_pred HHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHH
Confidence 655555555566666544 577777776655554444444433
No 179
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.52 E-value=5e-06 Score=65.08 Aligned_cols=116 Identities=12% Similarity=0.065 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH-----hcCHHHHHHHHHHHHhhhhhhHH
Q psy69 21 KQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF-----ADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 21 ~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
+... +...+...++.+++.++.+++.||+|+|+.+..+..+.+++.+...+ ..+.+.+++.-++.|++.+....
T Consensus 265 ~~~~-~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 265 ADLF-PYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4455 66666666888899999999999999999998877766655544332 23455666677888999999999
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 96 NHQLFMTALVVILM-------ASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 96 ~~~~~~~~~~p~~~-------r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
...++++|..+.++ .+...+......-++.++++.+.+.+..
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987431 2334556666666777777777666543
No 180
>PRK11043 putative transporter; Provisional
Probab=98.51 E-value=3.6e-06 Score=64.13 Aligned_cols=119 Identities=12% Similarity=0.002 Sum_probs=83.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHH---HH--hcCHHHHHHHHHHHHhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLM---AF--ADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~l~G~~~g 91 (157)
.+.++.+. +.......++..++....+++.||+++|+..........++.... .. .++....++...+.|++.+
T Consensus 233 ~g~s~~~~-g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (401)
T PRK11043 233 MGYSPADI-GLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANG 311 (401)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 57888888 887777888889999999999999999987655544443333221 12 2345555566677888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
..++.......|..| +++++..+..+.....+...++.+.+.+.+
T Consensus 312 ~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 312 AIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred HHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 888887777777765 578999998887655555556555555543
No 181
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.50 E-value=2.8e-06 Score=65.23 Aligned_cols=119 Identities=17% Similarity=0.249 Sum_probs=96.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh-cCHHHHHH----HHHHHHhhhhhh
Q psy69 19 IYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA-DDVLQLCI----GRFITGVAIGKS 93 (157)
Q Consensus 19 ~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~l~G~~~g~~ 93 (157)
.+.... +...+...+.-++.-...+++..|+|.|++++++.+..++=..+.+.. ++.+...+ ...+.|+..+..
T Consensus 240 ~~~~~~-g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~ 318 (400)
T PF03825_consen 240 YSGSTI-GILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLF 318 (400)
T ss_pred chhhHH-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHH
Confidence 344555 556666667777788899999999999999999999999998888876 45443332 345699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccccC
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNM-SIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 138 (157)
+.....|+.|.+|++.|++.++.++. ..++|..+|..+.+++.+.
T Consensus 319 ~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~ 364 (400)
T PF03825_consen 319 HAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDA 364 (400)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997665 5789999999999888763
No 182
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.50 E-value=1.4e-06 Score=67.42 Aligned_cols=120 Identities=12% Similarity=-0.051 Sum_probs=75.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHH---HHHHHHHHh--cCHHHHHHHHHHHHhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFF---FGWLLMAFA--DDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~l~G~~~g 91 (157)
.+.++.+. ++......++..++.+..|+++||+++++....+..... ++....... .+.+......++.|.+..
T Consensus 282 ~g~s~~~~-~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 360 (438)
T TIGR00712 282 KHFALDKS-SWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIY 360 (438)
T ss_pred cCCChhhH-HHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHc
Confidence 56788888 888888999999999999999999975432222222211 111111111 233333344455555433
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhcccc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMC-QGFSAVLLPQLHR 137 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 137 (157)
...........|.+|++.|++..+..+.....+ ..+++.+.+.+.+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~ 407 (438)
T TIGR00712 361 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 407 (438)
T ss_pred cHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHH
Confidence 322233456789999999999999887766654 4567777776654
No 183
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.49 E-value=2.2e-06 Score=65.07 Aligned_cols=123 Identities=13% Similarity=-0.016 Sum_probs=77.4
Q ss_pred CccccccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccc---hhhhh-hhHHHHHHHHHHHHhcCHHHHHHH
Q psy69 7 PLPIFCYLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRK---TTLQV-ASIPFFFGWLLMAFADDVLQLCIG 82 (157)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 82 (157)
.+|.+.++ .+++.. . +...+...+...++ .++++||..|| +.... .....++...+..+..+.....+.
T Consensus 214 wlp~~L~~--~g~s~~-~-~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 286 (368)
T TIGR00903 214 WLEAALRP--AGLEDI-A-GDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAF 286 (368)
T ss_pred HHHHHHHH--CCCChH-H-HHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence 34555433 345543 4 55555544444444 47788877654 33222 233333333333444444444555
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 83 RFITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 83 ~~l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
-.+.+++....++....+.+|.+|++.|++..+..+....++...++.+.+.+.
T Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~ 340 (368)
T TIGR00903 287 IGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI 340 (368)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 666777777777778899999999999999999999988888878877776554
No 184
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.49 E-value=5.6e-07 Score=67.43 Aligned_cols=105 Identities=14% Similarity=0.064 Sum_probs=74.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh--c--CHHHHHHHHHHHHhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA--D--DVLQLCIGRFITGVAIG 91 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~l~G~~~g 91 (157)
.++.++.+. +...+...+...++.++.|++.||+|||+....+......+..+..+. . +.+...+...+.++..+
T Consensus 255 ~~g~~~~~~-~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 333 (366)
T TIGR00886 255 QFGLSKVTA-GAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSG 333 (366)
T ss_pred HcCCcHHHH-HHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhc
Confidence 467788888 888888889999999999999999999988777766655555444332 2 44444445555555555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIG 122 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~ 122 (157)
.........+.|..| +++++..+..+....
T Consensus 334 ~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~ 363 (366)
T TIGR00886 334 AGNGSTFALVPHIFR-RATGAVSGLVGAIGN 363 (366)
T ss_pred cccchhhhcchhhch-hhcccHHHHHHHhcc
Confidence 555666677788876 577777776665443
No 185
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.48 E-value=1.3e-06 Score=68.31 Aligned_cols=109 Identities=11% Similarity=0.078 Sum_probs=81.7
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHh----Hhccc-hhhhhhhHHHHHHHHHHHHhcC------HHHHHHHH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIME----VWGRK-TTLQVASIPFFFGWLLMAFADD------VLQLCIGR 83 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d----~~grk-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 83 (157)
+..++++.+. +.+..+.-+...+..++.|.++| |+||| +.++++....+++..+....++ +.++++..
T Consensus 35 ~v~Gls~~~v-g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~ 113 (473)
T PRK10429 35 DVVGLSVGLV-GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTY 113 (473)
T ss_pred HhcCCCHHHH-HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 4468899999 99999999999999999999999 56985 4555666666666554433221 33455566
Q ss_pred HHHHhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy69 84 FITGVAIGKSELNHQLFMTALV-VILMASLSAHSVNMSIGMC 124 (157)
Q Consensus 84 ~l~G~~~g~~~~~~~~~~~~~~-p~~~r~~~~~~~~~~~~~~ 124 (157)
.+.+++.........++..|+. ++++|.+..+.......++
T Consensus 114 ~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig 155 (473)
T PRK10429 114 ILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLA 155 (473)
T ss_pred HHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 7778888888888899999998 5889998887765555544
No 186
>PRK09669 putative symporter YagG; Provisional
Probab=98.48 E-value=6.8e-06 Score=63.69 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH--hcCHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF--ADDVLQLCIGRFITGVAIGKSELNHQLFMTA 103 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~ 103 (157)
+.......+...++.+++++++||+|+|+.+..+.+...+......+ .++.+.+.+..++.|++.+...+...++++|
T Consensus 267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad 346 (444)
T PRK09669 267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD 346 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566777888999999999999999988877665544333222 2456667778889999999999999999999
Q ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 104 LVVILM-------ASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 104 ~~p~~~-------r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
..+.++ .+...+.......+|.++++.+.+.+..
T Consensus 347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987332 2334456666667777887777666553
No 187
>KOG0253|consensus
Probab=98.48 E-value=1.4e-07 Score=70.99 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=73.6
Q ss_pred HHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHH----HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy69 34 ISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVL----QLCIGRFITGVAIGKSELNHQLFMTALVVILM 109 (157)
Q Consensus 34 ~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~ 109 (157)
+.-+-|.++.+++.||+|||+++....+++.++.++...+.+.. +++.+|+.. .+.+.+.+.|..|.+|...
T Consensus 392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi----sg~fqvaYvYtPEVyPTav 467 (528)
T KOG0253|consen 392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI----SGAFQVAYVYTPEVYPTAV 467 (528)
T ss_pred HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH----hchheEEEEecCcccchhh
Confidence 44567889999999999999999999999988887776654433 233455554 4455667799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy69 110 ASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 110 r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
|++..+.-...-.+|..+.+++.
T Consensus 468 RatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 468 RATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred hhcchhhhhhHHhhhhhhhhHHH
Confidence 99988877777777777777665
No 188
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.47 E-value=2.9e-06 Score=64.49 Aligned_cols=110 Identities=6% Similarity=0.009 Sum_probs=71.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
+.+.++.+. +...+...++..++.++.+++.||+|||+.+..+.....++.....+.++.+..+....+.+.+.+....
T Consensus 233 ~~g~~~~~~-~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 311 (392)
T PRK10473 233 QMGFSRGEY-AIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFG 311 (392)
T ss_pred HcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 457788888 8888889999999999999999999999999888888777777666655544444444444444443332
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy69 96 NHQLFMTALVVILMA-SLSAHSVNMSIGMCQGFS 128 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r-~~~~~~~~~~~~~~~~~~ 128 (157)
. .+..+..|.+.| +...+.......++..++
T Consensus 312 ~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~ 343 (392)
T PRK10473 312 V--AMSQALGPFSLRAGVASSTLGIAQVCGSSLW 343 (392)
T ss_pred H--HHHHHhccCcccccHHHHHHHHHHHHHHHHH
Confidence 2 344555564444 333334443333343333
No 189
>KOG0569|consensus
Probab=98.46 E-value=3.4e-06 Score=65.90 Aligned_cols=104 Identities=15% Similarity=0.053 Sum_probs=76.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh---cC-H--H---HHHHHHHHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA---DD-V--L---QLCIGRFITG 87 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~---~~-~--~---~~~~~~~l~G 87 (157)
-++++.++ .+.+....+...+.++++.++.||+|||+.++.+...+.+...++... .+ . + ..+++.++..
T Consensus 300 aG~~~~~a-~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~ 378 (485)
T KOG0569|consen 300 AGFTPEEA-QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFI 378 (485)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 46788888 888999999999999999999999999999999999888887765542 11 1 1 1223444444
Q ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 88 VAIGKS-ELNHQLFMTALVVILMASLSAHSVNMSI 121 (157)
Q Consensus 88 ~~~g~~-~~~~~~~~~~~~p~~~r~~~~~~~~~~~ 121 (157)
++.+.. .++..-+.+|.+|.+.|..+.+......
T Consensus 379 ~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~ 413 (485)
T KOG0569|consen 379 ISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVN 413 (485)
T ss_pred HhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHH
Confidence 333332 5677889999999999998876544433
No 190
>KOG4686|consensus
Probab=98.44 E-value=1.7e-06 Score=63.32 Aligned_cols=129 Identities=9% Similarity=-0.018 Sum_probs=100.5
Q ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHH-HHHHHHHhcCHHHHHHHHHHHHhh
Q psy69 11 FCYLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFF-GWLLMAFADDVLQLCIGRFITGVA 89 (157)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~G~~ 89 (157)
...++.+++++.+. +.+.+....-..+.+++.|.++||+|++...+.+..+..+ +-....+ +++.-..+..++|+.
T Consensus 289 ~fF~~rfGlS~~~a-~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLs 365 (459)
T KOG4686|consen 289 MFFQKRFGLSAVSA-GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLS 365 (459)
T ss_pred HHHHHhhCCChhhc-cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhh
Confidence 34556789999999 9999999999999999999999999999776554443322 2222222 333344566788888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCccc
Q psy69 90 IGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRESSHI 142 (157)
Q Consensus 90 ~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (157)
.....-.....++..+|.+..|++.+..+...++|.++.+.+.+.+.+.++.+
T Consensus 366 ysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y 418 (459)
T KOG4686|consen 366 YSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSY 418 (459)
T ss_pred HHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCch
Confidence 88877778888999999999999999999999999999999999888766543
No 191
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.43 E-value=6.5e-07 Score=67.98 Aligned_cols=116 Identities=10% Similarity=-0.020 Sum_probs=77.3
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh-------cCHHHHHHHHHHH
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA-------DDVLQLCIGRFIT 86 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~ 86 (157)
+++++.++.+. +.....+.+...+..+.+|+++||+|.+|++......++++..+.... .+...........
T Consensus 246 ~~~fg~~~~~A-g~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l 324 (417)
T COG2223 246 VTQFGLSPVTA-GLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLAL 324 (417)
T ss_pred HHhcCCChhhH-HHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHH
Confidence 35688899998 899999999999999999999999999999999998888887776654 2333333333333
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 87 GVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 87 G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
++..|.....+.-++..++|++. +...++.....++|...-+..
T Consensus 325 ~~~~G~GnGsvfk~Ip~if~~~~-G~v~G~vga~G~lGGf~lp~~ 368 (417)
T COG2223 325 FVFAGLGNGSVFKMIPVIFPKET-GAVTGIVGAIGGLGGFFLPLA 368 (417)
T ss_pred HHHhccCcchheeechHHHHhhh-hHHHHHHHHhccccccchhHH
Confidence 33333334444455566665533 445666665555554333333
No 192
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.38 E-value=6.7e-06 Score=63.30 Aligned_cols=117 Identities=8% Similarity=-0.183 Sum_probs=87.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHH
Q psy69 18 IIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNH 97 (157)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~ 97 (157)
+.++... +...+.+..+..+|.++.+++.||+++|+.+.+......+..++..+.++... ....++.|++.+..++..
T Consensus 265 ~~~~~~a-~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i 342 (410)
T TIGR00885 265 GMTAGFA-ANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTI 342 (410)
T ss_pred CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHH
Confidence 3444444 55566666778899999999999999999988888887777777777666443 566778888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy69 98 QLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 98 ~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (157)
.+...+..+++.+......... .+|..+.|.+.+.+.+.
T Consensus 343 ~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~ 381 (410)
T TIGR00885 343 YGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDM 381 (410)
T ss_pred HHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHH
Confidence 9999999988775434333332 26788888888877763
No 193
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.37 E-value=1.1e-05 Score=63.00 Aligned_cols=79 Identities=10% Similarity=0.035 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHH-Hhc-----CHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy69 29 ASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMA-FAD-----DVLQLCIGRFITGVAIGKSELNHQLFMT 102 (157)
Q Consensus 29 ~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~l~G~~~g~~~~~~~~~~~ 102 (157)
..+..+...+..+++|+++||+|+|+++.++.+...+...... ..+ +++...+..+...++.|..+....-++.
T Consensus 292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip 371 (462)
T PRK15034 292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA 371 (462)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence 3445667778899999999999999999988877766654322 222 3444444444444555555556666777
Q ss_pred HHHHH
Q psy69 103 ALVVI 107 (157)
Q Consensus 103 ~~~p~ 107 (157)
+.+|+
T Consensus 372 ~~f~~ 376 (462)
T PRK15034 372 VIFRQ 376 (462)
T ss_pred HHHhh
Confidence 77764
No 194
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.37 E-value=2.4e-05 Score=59.53 Aligned_cols=119 Identities=12% Similarity=-0.022 Sum_probs=84.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhH-HHHHHHHHHHH--hcCHHHHHHHHHHHHhhhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASI-PFFFGWLLMAF--ADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~l~G~~~g~~ 93 (157)
.+.++.+. ++......++..+++.+.+++.||++++........ ...+....... ..+.+.+....++.|++.+..
T Consensus 238 ~g~~~~~~-~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 316 (394)
T PRK11652 238 LGLSSMTV-SILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGML 316 (394)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 56788888 888888888888999999999999884332221111 11111111122 234566677888999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
.+....+..|.+| +.++...+..+....++..+++.+...+..
T Consensus 317 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 317 FPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999887 567888888888888888888877666543
No 195
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.37 E-value=1.3e-05 Score=63.36 Aligned_cols=108 Identities=8% Similarity=-0.039 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhH----hccchhhhhhhHHHHHHHHHHHHhcC---------HHHHHHHHHHHHhhhhh
Q psy69 26 FVAASLGVISNPLGALLSGTIMEV----WGRKTTLQVASIPFFFGWLLMAFADD---------VLQLCIGRFITGVAIGK 92 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~----~grk~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~G~~~g~ 92 (157)
+++++...+...+..++.+++-+| ++.++.+.++.++.+++........+ .++....+++.|++...
T Consensus 319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~ 398 (500)
T PRK09584 319 EQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM 398 (500)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence 455566665566666665444444 44456677888888888777665543 46788899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 93 SELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
..+....++.+..|++.|++.++.+.....++..++..+..
T Consensus 399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888777777777766653
No 196
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.36 E-value=2e-05 Score=62.11 Aligned_cols=110 Identities=10% Similarity=0.003 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchh-------hhhhhHHHHHHHHHH-----HHh-----cCHHHHHHHHHHHHh
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTT-------LQVASIPFFFGWLLM-----AFA-----DDVLQLCIGRFITGV 88 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~-------~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~l~G~ 88 (157)
.++++...+...+.+++.+++.||+++|+. +.++.++.+++.+.. .+. .+.+++....++.|+
T Consensus 312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~ 391 (489)
T PRK10207 312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL 391 (489)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 345666667777888889999999999863 556666655554322 121 256777788999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 89 AIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 89 ~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
|.+...+....++.+..|+++++..++.++...++|..++..+....
T Consensus 392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999987776544
No 197
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.34 E-value=1e-05 Score=62.11 Aligned_cols=116 Identities=13% Similarity=0.025 Sum_probs=92.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHH
Q psy69 19 IYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQ 98 (157)
Q Consensus 19 ~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~ 98 (157)
.+.... +...+...+.-.+...+.+++.+|+|.|+.++++...+.+=...++++++.+.+.+.+.+.|+..+.......
T Consensus 256 ~g~~~~-G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 256 QGNQMY-GYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHH-hHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556 8888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcc
Q psy69 99 LFMTALVVILMASLSAHS-VNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 99 ~~~~~~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~ 135 (157)
-|+++.+|+|..++.... .+...+++..+.+.+.+.+
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~l 372 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYL 372 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 999999999987766553 3455555555554444444
No 198
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.28 E-value=6.3e-06 Score=64.56 Aligned_cols=94 Identities=10% Similarity=0.033 Sum_probs=68.9
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhc-----cchhhhhhhHHHH-HHHHHHHHhcCHHHHH-HHHHHHH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWG-----RKTTLQVASIPFF-FGWLLMAFADDVLQLC-IGRFITG 87 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~g-----rk~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~l~G 87 (157)
+++++++.+. +...+...+...+-. ++|+++||++ ||+.++++.++.. +........++..... +.+++.+
T Consensus 54 ~~lg~s~~~i-~~~~sl~~lpw~~K~-l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~ 131 (468)
T TIGR00788 54 DDLGLDGARY-QRLVGLSSLGWALKP-FAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAA 131 (468)
T ss_pred HhcCCCHHHH-HHHHHHHHHHHHHHH-HHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 4478999999 999999998888854 4999999997 6666666665552 3322233334443343 4788999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q psy69 88 VAIGKSELNHQLFMTALVVILMAS 111 (157)
Q Consensus 88 ~~~g~~~~~~~~~~~~~~p~~~r~ 111 (157)
++.+......-.+..|..+ |.+.
T Consensus 132 ~~~a~~dv~~da~~~e~~~-~~~~ 154 (468)
T TIGR00788 132 LAKALYDVLVDSLYSERIR-ESPS 154 (468)
T ss_pred HHHHHHHHhHHHHHhhhhh-cCCC
Confidence 9999989999999999998 5443
No 199
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.28 E-value=1.8e-05 Score=60.55 Aligned_cols=100 Identities=13% Similarity=0.046 Sum_probs=69.0
Q ss_pred CcccccHHHHHHHHHHHH-HHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHH---HHh-cCHHHHHHHH----HH
Q psy69 15 DRRIIYKQQVLFVAASLG-VISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLM---AFA-DDVLQLCIGR----FI 85 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~-~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~----~l 85 (157)
++.+.++.+. ++..... .++..++.++.+++.||+|||+.+........+..+.. .+. ++.+.+.+.- +.
T Consensus 238 ~~~G~~~~~~-g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (402)
T PRK11902 238 RGAGFSAGEV-GIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLC 316 (402)
T ss_pred HhcCCCHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 3467888888 8887654 45688999999999999999998776666555444332 333 3445444443 45
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy69 86 TGVAIGKSELNHQLFMTALVVILMASLSAH 115 (157)
Q Consensus 86 ~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~ 115 (157)
.|++.+........++++.+|.+.++....
T Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (402)
T PRK11902 317 GGMGTAAFVALLMALCNRSFSATQYALLSA 346 (402)
T ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 666677777778888888888877765333
No 200
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.25 E-value=3.7e-05 Score=57.83 Aligned_cols=126 Identities=13% Similarity=0.046 Sum_probs=93.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhc-cchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWG-RKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~g-rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+.++|+.+. +...+...+.....++....+++|.. +|+..+.....+.++.....+.+....+.- .+++|++.|..+
T Consensus 237 ~~G~sa~~a-G~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F 314 (395)
T COG2807 237 DRGLSAAEA-GSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAF 314 (395)
T ss_pred HcCCCHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHH
Confidence 467899999 99999999999999999999999755 455555555666666655556553322222 489999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccc
Q psy69 95 LNHQLFMTALVVI-LMASLSAHSVNMSIGMCQGFSAVLLPQLHRESSHIL 143 (157)
Q Consensus 95 ~~~~~~~~~~~p~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (157)
+....++.+..+. +..++..+..+....+-.++||.+.+.+++.+++|.
T Consensus 315 ~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~ 364 (395)
T COG2807 315 PLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWS 364 (395)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChH
Confidence 9999988887764 444555555555555568888999999988877764
No 201
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.25 E-value=1.4e-05 Score=61.47 Aligned_cols=90 Identities=16% Similarity=0.174 Sum_probs=72.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhc-cchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWG-RKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~g-rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+.+++..|+ +.+.+...+..+++++++|.++||.+ +|+.+.+..++.++........++++.+++...+..+......
T Consensus 31 ~~G~s~~qI-G~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~ 109 (400)
T PF03825_consen 31 SRGFSGTQI-GILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTM 109 (400)
T ss_pred hCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHH
Confidence 356899999 99999999999999999999999976 5677766666666655566667888888888888888877777
Q ss_pred HHHHHHHHHHHH
Q psy69 95 LNHQLFMTALVV 106 (157)
Q Consensus 95 ~~~~~~~~~~~p 106 (157)
+...++..+...
T Consensus 110 pl~dsi~~~~~~ 121 (400)
T PF03825_consen 110 PLSDSIALSYLG 121 (400)
T ss_pred HHHHHHHHHHcc
Confidence 777777777765
No 202
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.23 E-value=5.4e-05 Score=59.44 Aligned_cols=110 Identities=13% Similarity=-0.029 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccc-----hhh--hhhhHHHHHHHHHHHH---------hcCHHHHHHHHHHHHhh
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRK-----TTL--QVASIPFFFGWLLMAF---------ADDVLQLCIGRFITGVA 89 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk-----~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~G~~ 89 (157)
+++.+...+...+.+++..++..|.+|| ... .++.++.+++.....+ ..+++++.+..++.++|
T Consensus 315 ~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~g 394 (475)
T TIGR00924 315 IWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLG 394 (475)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHH
Confidence 5667777777777777766544454443 222 5666776666666554 35889999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 90 IGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 90 ~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
.....+....++.|..|++.|++..+.+.....+|..++..+....
T Consensus 395 e~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~ 440 (475)
T TIGR00924 395 ELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFG 440 (475)
T ss_pred HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888887776654
No 203
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.19 E-value=1.6e-06 Score=66.86 Aligned_cols=121 Identities=13% Similarity=0.119 Sum_probs=94.1
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHh----Hhccchhh-hhhhHHHHHHHHHHHHh-c-------CHHHHHH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIME----VWGRKTTL-QVASIPFFFGWLLMAFA-D-------DVLQLCI 81 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d----~~grk~~~-~~~~~~~~~~~~~~~~~-~-------~~~~~~~ 81 (157)
+..++++... +.+.....+-.++..|+.|.++| |+||||.. +++....+++..+.... + ...+..+
T Consensus 30 ~~~gl~~~~~-g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~ 108 (428)
T PF13347_consen 30 DVLGLSPALA-GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFV 108 (428)
T ss_pred HHcCCCHHHH-HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHH
Confidence 4467899999 99999999999999999999999 89987665 45667777776665544 3 1234567
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 82 GRFITGVAIGKSELNHQLFMTALVV-ILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 82 ~~~l~G~~~g~~~~~~~~~~~~~~p-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
..++..++....+....++..|+.+ +++|.+..+.......+|..+...+.+.+.
T Consensus 109 ~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~ 164 (428)
T PF13347_consen 109 FYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILV 164 (428)
T ss_pred HHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 7777899999989999999999998 568999998888887777765555555554
No 204
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.19 E-value=5.2e-05 Score=59.04 Aligned_cols=121 Identities=7% Similarity=-0.063 Sum_probs=77.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhh--------hhhHHH--HHHHHHHHH-hcCHHHHHHHHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQ--------VASIPF--FFGWLLMAF-ADDVLQLCIGRF 84 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~--------~~~~~~--~~~~~~~~~-~~~~~~~~~~~~ 84 (157)
..+.+..+. ++..+...++..++.++.|+++||+++|+... ...... .+....... ..+....+++..
T Consensus 291 ~~g~s~~~~-g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (465)
T TIGR00894 291 VLRVSGKEN-GLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILT 369 (465)
T ss_pred HhCcChHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 467788888 99999999999999999999999987653221 111111 111111122 223444444445
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy69 85 ITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 85 l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (157)
+.+.+.+...........|..|. .++...+..+....++..+++.+.+.+.++
T Consensus 370 l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~ 422 (465)
T TIGR00894 370 LANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQ 422 (465)
T ss_pred HHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCC
Confidence 55555554444444555566655 788899998888888888888887777653
No 205
>PRK11462 putative transporter; Provisional
Probab=98.15 E-value=5.7e-05 Score=59.07 Aligned_cols=116 Identities=12% Similarity=-0.003 Sum_probs=89.2
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH----hccchhh-hhhhHHHHHHHHHHHHhcC------HHHHHHHH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEV----WGRKTTL-QVASIPFFFGWLLMAFADD------VLQLCIGR 83 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~----~grk~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 83 (157)
+..++++..+ +.+..+.-+-..+.-|+.|.++|| +||||.. +++.+..+++..+....++ ..+..+..
T Consensus 38 ~~~Gl~~~~~-g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~ 116 (460)
T PRK11462 38 DIFGIPAGFV-GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITY 116 (460)
T ss_pred HhhCCCHHHH-HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 4568899999 999999999999999999999996 7887655 4555666666655443332 34556667
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 84 FITGVAIGKSELNHQLFMTALVV-ILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 84 ~l~G~~~g~~~~~~~~~~~~~~p-~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
.+..++.........++..|+.+ +|+|.+..+.+..+..+|..+++.+
T Consensus 117 ~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~ 165 (460)
T PRK11462 117 TLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVL 165 (460)
T ss_pred HHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888899999999998 8899999998887777766555444
No 206
>PRK11462 putative transporter; Provisional
Probab=98.12 E-value=0.00015 Score=56.71 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc--CHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD--DVLQLCIGRFITGVAIGKSELNHQLFMTA 103 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~~~~ 103 (157)
+.+...+.++.+++.+++++++||+|+|+.+..+.....+...+..+.+ +...+.+.-++.|++.+.......++++|
T Consensus 266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad 345 (460)
T PRK11462 266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSD 345 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677788889999999999999999887655554444333333322 22234445566787777766666777777
Q ss_pred HHHHH-----HH--HHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 104 LVVIL-----MA--SLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 104 ~~p~~-----~r--~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
..+-+ .| +...+......-++.+++..+.+.+.
T Consensus 346 ~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL 385 (460)
T PRK11462 346 TVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWML 385 (460)
T ss_pred hHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77633 22 22223333444455555555544443
No 207
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.12 E-value=6.5e-05 Score=57.15 Aligned_cols=112 Identities=7% Similarity=-0.202 Sum_probs=69.8
Q ss_pred ccccHHHHHHHHH--HHHHHHHHHHHHhH-HHHHhHhccchhhhhhhHHH-HHHHHHHH-H--hcC-HHHHHHHHHHHHh
Q psy69 17 RIIYKQQVLFVAA--SLGVISNPLGALLS-GTIMEVWGRKTTLQVASIPF-FFGWLLMA-F--ADD-VLQLCIGRFITGV 88 (157)
Q Consensus 17 ~~~~~~~~~~~~~--~~~~~g~~i~~~~~-g~l~d~~grk~~~~~~~~~~-~~~~~~~~-~--~~~-~~~~~~~~~l~G~ 88 (157)
.+.+..+. +... ....+..++.+++. ++..||+||||..++..... ........ + ..+ ..+.+....+.++
T Consensus 31 ~g~~~~~i-Gl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (390)
T TIGR02718 31 DGAPLTAL-AFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASL 109 (390)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence 57899999 8863 56677787788888 55789999998865554332 21222222 1 222 2333444455555
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 89 AIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSA 129 (157)
Q Consensus 89 ~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~ 129 (157)
...........+..|..+++.++...+....+..+|..++.
T Consensus 110 ~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~ 150 (390)
T TIGR02718 110 ASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGG 150 (390)
T ss_pred HHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHH
Confidence 56666666777777888777777766666666555555554
No 208
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.12 E-value=5.6e-06 Score=64.84 Aligned_cols=122 Identities=10% Similarity=-0.023 Sum_probs=99.0
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh----------cCHHHHHHHH
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA----------DDVLQLCIGR 83 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 83 (157)
.+..+.++.+. +.......++..++....+.+.+|++.|+.+.++.++.+++....... ++.+.++..-
T Consensus 280 ~~~lG~s~~~~-G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~ 358 (468)
T TIGR00788 280 TQCLPGGPSFS-GMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS 358 (468)
T ss_pred cccCCCCcchh-hhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence 34578899999 999999999999999999999999999999999888887776443211 3333445567
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 84 FITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 84 ~l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
++.+++.+........++++..|++.+++..+..+...++|..+++.+...+.
T Consensus 359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~ 411 (468)
T TIGR00788 359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLM 411 (468)
T ss_pred HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899989888999999999999999999998888888888888876555554
No 209
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.08 E-value=0.00012 Score=57.15 Aligned_cols=119 Identities=12% Similarity=0.135 Sum_probs=89.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc--CHHHHHHHHHHHHhhhhhhHH
Q psy69 18 IIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD--DVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~~~ 95 (157)
+.++.+. .........+..++.++...+++|+|+|+++.++.++.+++..+..+.+ +....++...+.+++.+...+
T Consensus 268 g~~~l~~-~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~ 346 (467)
T COG2211 268 GDPELFA-YLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346 (467)
T ss_pred CChHHHH-HHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence 3344555 5666777777888899999999999999999999999999998888765 677788888999999999999
Q ss_pred HHHHHHHHHHHHHH-----H--HHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 96 NHQLFMTALVVILM-----A--SLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 96 ~~~~~~~~~~p~~~-----r--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
...+.++|..+-.+ | |...+......=+|.+++..+.++...
T Consensus 347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998876432 1 222333334444666777666655543
No 210
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.07 E-value=9.4e-05 Score=56.43 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=102.8
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHh-HhccchhhhhhhHHHHHHHHHHH---HhcCHHHHHHHHHHHHhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIME-VWGRKTTLQVASIPFFFGWLLMA---FADDVLQLCIGRFITGVAI 90 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d-~~grk~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~G~~~ 90 (157)
+.++++..|. ...+.....|..++....|++.. |.++|+...++.....++..+.. ...+.+.+-..-++.|++.
T Consensus 237 ~Vfgmsv~eT-T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~ 315 (403)
T PF03209_consen 237 EVFGMSVGET-TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGN 315 (403)
T ss_pred HHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence 4488999999 99999999999999999998887 57777777777777666655533 3457788888999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
|.......+.+.+..++++.+...+.++....++.+++....+.+.+
T Consensus 316 G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 316 GLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred hHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888888777654
No 211
>PRK09848 glucuronide transporter; Provisional
Probab=98.04 E-value=5.4e-05 Score=58.77 Aligned_cols=104 Identities=10% Similarity=0.078 Sum_probs=70.8
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh----ccchhh-hhhhHHHHHHHHHHH-Hh----cC--HHHHHHH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVW----GRKTTL-QVASIPFFFGWLLMA-FA----DD--VLQLCIG 82 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~----grk~~~-~~~~~~~~~~~~~~~-~~----~~--~~~~~~~ 82 (157)
+..++++.+. +.+.+...+...+..++.|+++||. |||+.. .++.+...+...+.. .. .+ ....++.
T Consensus 37 ~~~gl~~~~~-g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (448)
T PRK09848 37 DVAGVGAAAA-GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLT 115 (448)
T ss_pred HHcCCCHHHH-HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHH
Confidence 4468899999 9999999999999999999999996 666654 444444443333321 11 11 2233445
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy69 83 RFITGVAIGKSELNHQLFMTALVV-ILMASLSAHSVNM 119 (157)
Q Consensus 83 ~~l~G~~~g~~~~~~~~~~~~~~p-~~~r~~~~~~~~~ 119 (157)
..+.+++.+..++...++..|..+ +++|.+..+....
T Consensus 116 ~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~ 153 (448)
T PRK09848 116 YMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGI 153 (448)
T ss_pred HHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHH
Confidence 567788888877777777777664 4567776655543
No 212
>KOG3762|consensus
Probab=98.02 E-value=6.9e-06 Score=64.44 Aligned_cols=111 Identities=9% Similarity=0.022 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTALV 105 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~ 105 (157)
+........|-++.-++.+++.+|+|+-+++..++...++=.+..++..|.|..+..-.++|+..+..+...-+|++...
T Consensus 409 Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~va 488 (618)
T KOG3762|consen 409 GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVA 488 (618)
T ss_pred eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44455566677777788889999999999999999998888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhhhccc
Q psy69 106 VILMASLSAH-SVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 106 p~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~ 136 (157)
||+.|.++.+ ......++|-++|+++.+.+.
T Consensus 489 Pp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v 520 (618)
T KOG3762|consen 489 PPGLRATAQGLLQGIFHGLGKGLGSLIGGFVV 520 (618)
T ss_pred CCcchHHHHHHHHHHhcccCcchhhhhhhhhh
Confidence 9999999988 444556677677766665543
No 213
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=97.99 E-value=5.3e-05 Score=45.33 Aligned_cols=69 Identities=17% Similarity=0.089 Sum_probs=59.0
Q ss_pred ccccccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHH
Q psy69 8 LPIFCYLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQL 79 (157)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (157)
+|.+.++ .++|..+. +++.+..++|+.+|++...++.++.++++.+..+.+...+....+++.++.+.+
T Consensus 15 LP~M~~~--~~ls~~~a-g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 15 LPLMQAD--GGLSLSQA-GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred hHHHHHh--cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 4444443 56899999 999999999999999999999999888888999999999999999988877654
No 214
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=97.95 E-value=9.3e-05 Score=56.95 Aligned_cols=91 Identities=16% Similarity=0.168 Sum_probs=56.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHH--HHHHHH-HH----hcCH-HHHHHHHHHHHh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFF--FGWLLM-AF----ADDV-LQLCIGRFITGV 88 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~--~~~~~~-~~----~~~~-~~~~~~~~l~G~ 88 (157)
.|++.++. +.+.+...+...+.+++.|.++||+|.||-+++...... .+.... .+ ..|. ...+++....|+
T Consensus 38 ~GLs~~~i-G~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~ 116 (412)
T PF01306_consen 38 AGLSGTEI-GIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGL 116 (412)
T ss_dssp H---HHHH-HHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTT
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999 999999999999999999999999997776554432221 122221 11 1233 233344444566
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q psy69 89 AIGKSELNHQLFMTALVVIL 108 (157)
Q Consensus 89 ~~g~~~~~~~~~~~~~~p~~ 108 (157)
......+...+|+.+....+
T Consensus 117 ~f~~~~~~~Ea~~er~sr~~ 136 (412)
T PF01306_consen 117 VFNAGVPLSEAYAERVSRRN 136 (412)
T ss_dssp TTTTHHHHHHHHHHHHHHHH
T ss_pred HHcccchHHHHHHHHHHHHh
Confidence 66666677777766665443
No 215
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.94 E-value=1.6e-06 Score=68.94 Aligned_cols=149 Identities=14% Similarity=0.118 Sum_probs=3.0
Q ss_pred CCCCCccccccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh----cC---
Q psy69 3 MSDTPLPIFCYLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA----DD--- 75 (157)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~----~~--- 75 (157)
|.+..++.. ++++++++.+. +++.+.+-++..+..++..+..+|..|.|.+-.+.++++++.+++++- +.
T Consensus 21 ~~~~~ltti--ErRF~l~S~~~-G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~ 97 (539)
T PF03137_consen 21 YVNSSLTTI--ERRFGLSSSQS-GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSY 97 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH--HHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcc
Confidence 333444433 34488999999 999999999999999999999999888888888888888888775531 00
Q ss_pred -------------------------------------------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy69 76 -------------------------------------------VLQLCIGRFITGVAIGKSELNHQLFMTALVVILMASL 112 (157)
Q Consensus 76 -------------------------------------------~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r~~ 112 (157)
+..++++.++.|+|....++...+|+-|.++++.-+.
T Consensus 98 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~spl 177 (539)
T PF03137_consen 98 EEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPL 177 (539)
T ss_dssp ------------------------------------------------------SSS-----------------------
T ss_pred ccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCcc
Confidence 1345667899999999999999999999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccc------CC--cccccCCCChhhhhh
Q psy69 113 SAHSVNMSIGMCQGFSAVLLPQLHR------ES--SHILVTPGEASWIGK 154 (157)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~w~~~ 154 (157)
-.+.......+|.++|-++.+.... +. ...-..+++.+|+.+
T Consensus 178 YiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGA 227 (539)
T PF03137_consen 178 YIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGA 227 (539)
T ss_dssp --------------------------------------------------
T ss_pred chhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHH
Confidence 7777777666666666555444431 11 122345666677653
No 216
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.81 E-value=0.0001 Score=43.37 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=40.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIP 62 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~ 62 (157)
+.++++.+. +.+.++..+...++++++|.++||+++++..+.....
T Consensus 29 ~~Gl~~~~i-Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 29 QLGLSPSQI-GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred hcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 478999999 9999999999999999999999999999887665443
No 217
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.81 E-value=0.00059 Score=55.73 Aligned_cols=118 Identities=17% Similarity=0.069 Sum_probs=88.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH-hccchhhhhhhHHHHHHHHHHHHhcC--------HHHHHHHHHHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEV-WGRKTTLQVASIPFFFGWLLMAFADD--------VLQLCIGRFITG 87 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~-~grk~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~G 87 (157)
.+.++.+. ..+...+....-+..+++|+++|+ +||++++.++.++..++..+..+... ....+++-.+..
T Consensus 18 lg~~~~~A-~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia 96 (654)
T TIGR00926 18 LGFSESTS-TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIA 96 (654)
T ss_pred cCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHH
Confidence 56777777 777777777777889999999996 89999999999998888877766421 223556778888
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 88 VAIGKSELNHQLFMTALVVILM---ASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 88 ~~~g~~~~~~~~~~~~~~p~~~---r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
+|.|+.-++..+...|.++++. |.+...+.....++|..++..+.+.+
T Consensus 97 ~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l 147 (654)
T TIGR00926 97 LGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPIL 147 (654)
T ss_pred hhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899988999999999887543 44444556666666666666665554
No 218
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.00018 Score=56.10 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=96.3
Q ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH----hccch-hhhhhhHHHHHHHHHHHHhcC------HHHHHH
Q psy69 13 YLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEV----WGRKT-TLQVASIPFFFGWLLMAFADD------VLQLCI 81 (157)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~----~grk~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 81 (157)
+.|..++++..+ +.+..+.=+-.++.-|+.|.++|| +||+| -++++.+..++.+.++-.+++ ....++
T Consensus 39 YTdv~Gis~~~a-G~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~v 117 (467)
T COG2211 39 YTDVFGLSAALA-GTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALV 117 (467)
T ss_pred HhcccCCcHHHH-HHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHH
Confidence 345678999999 888888888899999999999996 77654 456666777777777766653 345667
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 82 GRFITGVAIGKSELNHQLFMTALVV-ILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 82 ~~~l~G~~~g~~~~~~~~~~~~~~p-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
...+.++++........++..|+.+ +++|.+..+.+.....+|..+...+.+.+
T Consensus 118 tY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~pl 172 (467)
T COG2211 118 TYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPL 172 (467)
T ss_pred HHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999988889999999987 67899999998888887766665555444
No 219
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.81 E-value=0.00059 Score=52.18 Aligned_cols=120 Identities=14% Similarity=0.076 Sum_probs=85.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhc-----cchhhh-hhhHHHHHHHHHHHH-----hc-------CH-
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWG-----RKTTLQ-VASIPFFFGWLLMAF-----AD-------DV- 76 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~g-----rk~~~~-~~~~~~~~~~~~~~~-----~~-------~~- 76 (157)
|.+++..-. +....+..+... ..+..|+.+|+.+ ||..++ .+......+..+..+ .. +.
T Consensus 9 EL~vpA~lv-~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~ 86 (403)
T PF03209_consen 9 ELGVPAWLV-ALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW 86 (403)
T ss_pred HhccHHHHH-HHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence 355666666 666666665555 5899999999988 665554 444444444444333 12 12
Q ss_pred H---HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 77 L---QLCIGRFITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 77 ~---~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
. ...+...+.|++.+...+...++..|..|+|+|++..++.....-+|..++..+.+.+.+
T Consensus 87 ~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~ 150 (403)
T PF03209_consen 87 LGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLD 150 (403)
T ss_pred HHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 1 223467889999999999999999999999999999998888888888888777665553
No 220
>KOG2816|consensus
Probab=97.72 E-value=0.00028 Score=55.32 Aligned_cols=100 Identities=14% Similarity=0.097 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHH
Q psy69 31 LGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAI--GKSELNHQLFMTALVVIL 108 (157)
Q Consensus 31 ~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~--g~~~~~~~~~~~~~~p~~ 108 (157)
...+...+.++..|.++||+|||..+.+..+...+......+.. ++..+ +.++.. +.......++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchh
Confidence 34677888999999999999999999998888877777766655 33333 333332 334677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 109 MASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 109 ~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
.|....+..+..+..+..+++.+...+
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~ 171 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYL 171 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999988887776666665554443
No 221
>KOG4686|consensus
Probab=97.68 E-value=1.9e-07 Score=68.10 Aligned_cols=121 Identities=14% Similarity=0.138 Sum_probs=85.5
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH-hccchhhhhhhHHHHHHHHHHH---HhcCHHHHHHHHHHHHhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEV-WGRKTTLQVASIPFFFGWLLMA---FADDVLQLCIGRFITGVA 89 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~-~grk~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~G~~ 89 (157)
+.+.+++.++. .++.+.+..-+.+-+.++|++.|| +|.|...++-.....++.++.+ ..+.+|.+..+|++.|+|
T Consensus 71 k~d~ni~~akf-tLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIG 149 (459)
T KOG4686|consen 71 KLDSNIEYAKF-TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIG 149 (459)
T ss_pred hcccccceeee-eeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccC
Confidence 34456666677 788888889999999999999996 7777666665555566665544 357889999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 90 IGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 90 ~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
.-....+.+.|...++..++.+...+..-..-.+|..+-..+.+++
T Consensus 150 gESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~l 195 (459)
T KOG4686|consen 150 GESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFL 195 (459)
T ss_pred chhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHH
Confidence 8887788888888777666665555554444444433333333333
No 222
>KOG2563|consensus
Probab=97.64 E-value=0.00041 Score=53.67 Aligned_cols=119 Identities=11% Similarity=-0.045 Sum_probs=93.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc------CHH--HHHHHHHHHHhhhh
Q psy69 20 YKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD------DVL--QLCIGRFITGVAIG 91 (157)
Q Consensus 20 ~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~l~G~~~g 91 (157)
+.... -|...++.+......+.+-|+.||+|-|...+++...-+++..+-..+. +++ ....+..+.+.+.-
T Consensus 77 s~~~~-~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~ 155 (480)
T KOG2563|consen 77 SSSAA-DWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQP 155 (480)
T ss_pred chHHH-HHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhh
Confidence 44445 5788888888999999999999999999999999999999988866542 233 44556677766665
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRES 139 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
.....-.-...-++|+++|+.++..-.++-.+|.+++.++-|.+.|.+
T Consensus 156 Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 156 FILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 555554556677899999999999888887888888888888887754
No 223
>KOG3764|consensus
Probab=97.61 E-value=7.3e-05 Score=56.96 Aligned_cols=116 Identities=16% Similarity=0.065 Sum_probs=85.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhc--cchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHH
Q psy69 20 YKQQVLFVAASLGVISNPLGALLSGTIMEVWG--RKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNH 97 (157)
Q Consensus 20 ~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~g--rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~ 97 (157)
+..+. +....-..+...+++.+.|.++||++ |......+.+....+.....+++++..+++-++..+++.+...+..
T Consensus 304 p~w~~-G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl 382 (464)
T KOG3764|consen 304 PGWEV-GLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASL 382 (464)
T ss_pred CCcce-eeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHH
Confidence 33466 66666678889999999999999999 6666666666666666667788999999999999899888887776
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 98 QLFMTALVVILMAS------LSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 98 ~~~~~~~~p~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
.....+.+..++-. ...++....+++++++|+.+.+.+.
T Consensus 383 ~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv 427 (464)
T KOG3764|consen 383 IPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLV 427 (464)
T ss_pred hhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhe
Confidence 66666666655433 4445566666677777766665553
No 224
>KOG0255|consensus
Probab=97.58 E-value=0.0034 Score=49.73 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=74.8
Q ss_pred HHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHH---HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q psy69 35 SNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVL---QLCIGRFITGVAIGKSELNHQLFMTALVVILMAS 111 (157)
Q Consensus 35 g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r~ 111 (157)
.........+...|++|||.....+.....++.+...+..+.. ...+...+...+.+..+.....+..|.+|+..|.
T Consensus 362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~ 441 (521)
T KOG0255|consen 362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRN 441 (521)
T ss_pred HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 4445556667999999999999999999999988888765432 3555666666666666777799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy69 112 LSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~ 132 (157)
.+.+.......++..+++.+.
T Consensus 442 ~~~~~~~~~~~~~~i~ap~~~ 462 (521)
T KOG0255|consen 442 TAVGAISAAARLGSILAPLFP 462 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 998877777776666665543
No 225
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.54 E-value=0.0053 Score=48.63 Aligned_cols=111 Identities=9% Similarity=0.052 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhcc--ch-----hhhhhhHHHHHHHHHHHHh---------cCHHHHHHHHHHHHhh
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGR--KT-----TLQVASIPFFFGWLLMAFA---------DDVLQLCIGRFITGVA 89 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~gr--k~-----~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~G~~ 89 (157)
++.++...+..++.+++.+++-.|.+| |. -+.++.+..+++...+.+. .+.+++++..+++++|
T Consensus 311 ~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~g 390 (493)
T PRK15462 311 AMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFA 390 (493)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH
Confidence 567888888888888888888777633 21 1556667777776555431 2567888899999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhccc
Q psy69 90 IGKSELNHQLFMTALVVILMASLSAHSVNMSI-GMCQGFSAVLLPQLH 136 (157)
Q Consensus 90 ~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~ 136 (157)
.-+..+...+.+++..|+|.|++.++.+.... .++..++..+.....
T Consensus 391 El~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~ 438 (493)
T PRK15462 391 ELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTS 438 (493)
T ss_pred HHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999887743 577777766666553
No 226
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.53 E-value=0.002 Score=50.76 Aligned_cols=111 Identities=13% Similarity=0.028 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhcc-chhhhhhhHHHHHHHHHHHHhcC---------------------HHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGR-KTTLQVASIPFFFGWLLMAFADD---------------------VLQLCIGR 83 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~gr-k~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~ 83 (157)
.+....+.+...+.+++..++.+|+|+ |+....+.++.+++.....+.++ .+..++..
T Consensus 308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (477)
T TIGR01301 308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF 387 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence 344555666666888889999999995 66667777777777666654332 36677788
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 84 FITGVAIGKSELNHQLFMTALVVIL--MASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 84 ~l~G~~~g~~~~~~~~~~~~~~p~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
.+.|+..+..+..-++++++..+++ ..|..+++.|....+...+..+..+.+.
T Consensus 388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~ 442 (477)
T TIGR01301 388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWD 442 (477)
T ss_pred HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999964 4488888999988887777776655543
No 227
>KOG0254|consensus
Probab=97.51 E-value=0.0019 Score=51.22 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc----C-------H-HHH--HHHHHHHHhhhhhhH
Q psy69 29 ASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD----D-------V-LQL--CIGRFITGVAIGKSE 94 (157)
Q Consensus 29 ~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~----~-------~-~~~--~~~~~l~G~~~g~~~ 94 (157)
.....+...++..+..++.||+|||+.++.+...+.++.++.+... . . +.. ..+-++..+..+ ..
T Consensus 335 ~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g-~g 413 (513)
T KOG0254|consen 335 SIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIG-WG 413 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcc-cc
Confidence 3344555667777779999999999999999999988887766431 1 1 111 112222222222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy69 95 LNHQLFMTALVVILMASLSAHS 116 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~ 116 (157)
+....+.+|.+|.+.|++..+.
T Consensus 414 ~v~w~~~sEifp~~~r~~~~s~ 435 (513)
T KOG0254|consen 414 PVPWVIVSEIFPLRLRSKGASL 435 (513)
T ss_pred cchhhhhhccCcHhHHhhhHHH
Confidence 4555788999999999877653
No 228
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.48 E-value=0.0036 Score=49.39 Aligned_cols=85 Identities=16% Similarity=0.105 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhh-HHHHHHHHHHHHh-cC-HHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVAS-IPFFFGWLLMAFA-DD-VLQLCIGRFITGVAIGKSELNHQLFMT 102 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~-~~~~~~~~~~~~~-~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~ 102 (157)
++..++..+...+..++.|-++|+-++||.++... .+..+++....+. ++ ++...+...+.-++.+.......++..
T Consensus 73 ~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP 152 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLP 152 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 67788888889999999999999988776655444 4445555555553 33 444445566666777888888999999
Q ss_pred HHHHHHHH
Q psy69 103 ALVVILMA 110 (157)
Q Consensus 103 ~~~p~~~r 110 (157)
|..+++.+
T Consensus 153 ~la~~~~~ 160 (477)
T PF11700_consen 153 DLARPEPR 160 (477)
T ss_pred hhcCCChh
Confidence 99988877
No 229
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=97.33 E-value=0.016 Score=44.83 Aligned_cols=105 Identities=15% Similarity=0.140 Sum_probs=79.5
Q ss_pred ccccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q psy69 10 IFCYLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVA 89 (157)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 89 (157)
.+....+.|+++.|...-+.-...-......++...++|..+.|+++++..+...+...+..+.++...+-+.-+..|++
T Consensus 28 ~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~ 107 (412)
T PF01770_consen 28 PYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLA 107 (412)
T ss_pred HHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 34444446777776612333344445666788899999999999999999999888888888999999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy69 90 IGKSELNHQLFMTALVVILMASLSAH 115 (157)
Q Consensus 90 ~g~~~~~~~~~~~~~~p~~~r~~~~~ 115 (157)
.+. ..+..+|+-..+|+++--+.++
T Consensus 108 ~a~-evay~sYiys~v~~~~yq~vts 132 (412)
T PF01770_consen 108 TAA-EVAYYSYIYSVVDKEHYQKVTS 132 (412)
T ss_pred HHH-HHHHHHHheeecCHHHHHHHHH
Confidence 887 6667777777777775544544
No 230
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.31 E-value=0.005 Score=47.96 Aligned_cols=122 Identities=12% Similarity=0.040 Sum_probs=83.8
Q ss_pred ccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh-----ccchhhhhhhHHHHHHHHHHHHh----cCHHHHHHH
Q psy69 12 CYLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVW-----GRKTTLQVASIPFFFGWLLMAFA----DDVLQLCIG 82 (157)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~-----grk~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 82 (157)
..++++++++.+. ....+...+-..+ .++.|.++|.+ .||+-++++.++..++....... .+.....++
T Consensus 15 ~l~~~l~ls~~~~-~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 92 (433)
T PF03092_consen 15 FLKDDLGLSPAQL-QRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVL 92 (433)
T ss_pred HHHHHcCCCHHHH-HHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHH
Confidence 3446688999998 8877777766664 89999999985 35555566666655555444442 245555667
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 83 RFITGVAIGKSELNHQLFMTALVVIL--MASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 83 ~~l~G~~~g~~~~~~~~~~~~~~p~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
.++..++........-+...|....| .|+...+.......+|..++..+.+.+
T Consensus 93 l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l 147 (433)
T PF03092_consen 93 LFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPL 147 (433)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 78888888888899999999998544 355666666666666777666555444
No 231
>KOG2816|consensus
Probab=97.19 E-value=0.0046 Score=48.62 Aligned_cols=121 Identities=17% Similarity=0.103 Sum_probs=99.2
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHH-HHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSG-TIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g-~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
..++.++.+. +...+.......+++.+.. .+...+|-|+....+.....+.....++.++.|+.+....+.++... .
T Consensus 270 ~~f~w~~~~~-s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~-~ 347 (463)
T KOG2816|consen 270 AKFGWNKKEF-SDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGI-V 347 (463)
T ss_pred eecCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcc-h
Confidence 4467788888 8788877777777777776 77788999998889998889999999999999988888777665544 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
.+...+.++.+..++++|+..++....-++...+++.+...+.+
T Consensus 348 ~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 348 FPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred hHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 78888999999999999999998888888888888777655543
No 232
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.15 E-value=0.0056 Score=47.15 Aligned_cols=111 Identities=13% Similarity=-0.021 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHH--HHHH---HHHHHhcCHHHHHHHHHHHHhhhhhhHHH
Q psy69 22 QQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPF--FFGW---LLMAFADDVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 22 ~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
.+. .+.+..+.+|.+++.--...+ |+ |++.+.+.+-. .+.. ....+.++.+.+++..+..|+..|..+..
T Consensus 281 ~~Y-~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVN 355 (402)
T PF02487_consen 281 DQY-RWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVN 355 (402)
T ss_pred HHH-HHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 444 788999999988886654433 33 33333322222 1111 12234567888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 97 HQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 97 ~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
....+.|-.|+++|..+.+...++-+.|..++.++.-++.+
T Consensus 356 tF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 356 TFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888766654
No 233
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.14 E-value=0.0037 Score=50.51 Aligned_cols=109 Identities=12% Similarity=-0.026 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHhccc-hhhhhhhHHHHHHHHHHHHh--cCHHHHHHHHHHHHhhhhhhHHHHHH
Q psy69 23 QVLFVAASLGVISNPLGALLSGTIMEVWGRK-TTLQVASIPFFFGWLLMAFA--DDVLQLCIGRFITGVAIGKSELNHQL 99 (157)
Q Consensus 23 ~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~g~~~~~~~~ 99 (157)
+. ++......++..+++.+.|.+..+++|- ..++.+..++.+++.+++.. ++....+..-++.|++.|........
T Consensus 350 ~~-~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~ 428 (599)
T PF06609_consen 350 EI-GWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIV 428 (599)
T ss_pred ee-ehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHH
Confidence 45 5666777888888999999999988874 45556666665554444432 35555667788999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 100 FMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 100 ~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
..+-..|.++-+.+.+.......+|..++..+.
T Consensus 429 ~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy 461 (599)
T PF06609_consen 429 IAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIY 461 (599)
T ss_pred eeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 888888999999999888877777777776554
No 234
>KOG3098|consensus
Probab=97.11 E-value=0.0038 Score=48.83 Aligned_cols=109 Identities=10% Similarity=-0.018 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy69 27 VAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTALVV 106 (157)
Q Consensus 27 ~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p 106 (157)
..+++.+....+.+++.+.+.|+.+.|..+.++............+ +|-+.+..+-++.|+|.+..+...-.|++|+.+
T Consensus 54 ~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st 132 (461)
T KOG3098|consen 54 YGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNST 132 (461)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCC
Confidence 3367777888899999999999999999999988887666555444 456778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 107 ILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 107 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
+|.+.+..+........+..+|...+-.+.
T Consensus 133 ~~tie~Nisi~Wai~~~~li~Ggi~l~~~~ 162 (461)
T KOG3098|consen 133 RETIERNISIFWAIGQSSLIIGGIILFIYF 162 (461)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHhheeee
Confidence 999998888777766666777755544443
No 235
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.04 E-value=0.011 Score=45.53 Aligned_cols=112 Identities=15% Similarity=-0.005 Sum_probs=60.1
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH-----hcCHHHHHHHHHHHHhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF-----ADDVLQLCIGRFITGVA 89 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~ 89 (157)
+..+.++.+. ++.......+..+++.+.+.+.++..+++..........++..+... .+++....+..++.+++
T Consensus 247 ~~~g~s~~~~-gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G 325 (413)
T PRK15403 247 DAGGMTTSQF-AWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFG 325 (413)
T ss_pred HhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Confidence 3467888888 88887777788888888877665444444332222222222222211 22333345677888888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 90 IGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFS 128 (157)
Q Consensus 90 ~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~ 128 (157)
.+...+......- .-.+..++++.+..+.....+...+
T Consensus 326 ~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~ 363 (413)
T PRK15403 326 IGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVS 363 (413)
T ss_pred HHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHH
Confidence 8877666653221 1111124556555444443333333
No 236
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=96.88 E-value=0.0065 Score=46.60 Aligned_cols=88 Identities=13% Similarity=0.013 Sum_probs=74.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
.+.++.+. +...+.+..+.++|.+++.++.+|+...|.+.+......+.++...+.++.. -+.+-++.|+..+..++.
T Consensus 267 ~g~~~~~a-a~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v-~~~~l~~ig~F~simfPT 344 (422)
T COG0738 267 LGLNEQQA-AYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVV-ALYALFLIGLFNSIMFPT 344 (422)
T ss_pred CCccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHhHHHHHH
Confidence 56788899 9999999999999999999999999999998888877777777777777743 334566778899999999
Q ss_pred HHHHHHHHHH
Q psy69 97 HQLFMTALVV 106 (157)
Q Consensus 97 ~~~~~~~~~p 106 (157)
..+...+..|
T Consensus 345 Ifslal~~l~ 354 (422)
T COG0738 345 IFSLALKNLG 354 (422)
T ss_pred HHHHHHhccC
Confidence 9999888888
No 237
>KOG2615|consensus
Probab=96.81 E-value=0.0061 Score=46.62 Aligned_cols=122 Identities=10% Similarity=-0.023 Sum_probs=96.9
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhc--cchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWG--RKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~g--rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g 91 (157)
+..+++++.|. +.+.+...++..+.+....+..||.. -+..+.....++.-..++.+..+....+.++-.+-.+...
T Consensus 289 ~~rfg~ss~~~-G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A 367 (451)
T KOG2615|consen 289 HGRFGYSSMQQ-GKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTA 367 (451)
T ss_pred cCccCCChhhh-eeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHH
Confidence 35578899999 88888887777777777777778766 4556666666666666666667777777777778777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
...+....++....|.+.||..+++......++=++||++.+.+.
T Consensus 368 ~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~ 412 (451)
T KOG2615|consen 368 SVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF 412 (451)
T ss_pred HhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence 778888899999999999999999999999999999988875554
No 238
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=96.81 E-value=0.0045 Score=45.99 Aligned_cols=65 Identities=8% Similarity=-0.035 Sum_probs=59.5
Q ss_pred HhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 72 FADDVLQLCIGRFITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 72 ~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
...++..++++.++.|.|.+..++..+.|+.+..|+|.+++..+..+...++|..++|++...+.
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i 70 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI 70 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999987665
No 239
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=96.77 E-value=2.8e-06 Score=65.70 Aligned_cols=105 Identities=14% Similarity=0.068 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHH--H--hcCH-----HHHHHHHHHHHhhhh-hhHHHHHHHH
Q psy69 32 GVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMA--F--ADDV-----LQLCIGRFITGVAIG-KSELNHQLFM 101 (157)
Q Consensus 32 ~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~--~--~~~~-----~~~~~~~~l~G~~~g-~~~~~~~~~~ 101 (157)
..+...++.+...++.||+|||+.++.+.....++..... . .++. ...+++-.+.....+ +..+....+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~ 374 (451)
T PF00083_consen 295 LGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYT 374 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccc
Confidence 3345556777778999999999999998888777766553 1 1111 111222222222222 2345566888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 102 TALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 102 ~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
.|.+|++.|++..+.......++..+++.+.+.+.
T Consensus 375 ~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~ 409 (451)
T PF00083_consen 375 AELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLF 409 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 99999999998888666655555555555554444
No 240
>KOG2533|consensus
Probab=96.61 E-value=0.011 Score=46.79 Aligned_cols=99 Identities=10% Similarity=-0.006 Sum_probs=66.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH----hccchhhhhhhHHHHHHH-HHHHHhcCHHHHHHHHHHHHhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEV----WGRKTTLQVASIPFFFGW-LLMAFADDVLQLCIGRFITGVAI 90 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~----~grk~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~G~~~ 90 (157)
..+.+..+. ....+.+.++.+++.+++|+++|| ..+|........++.... .....................+.
T Consensus 303 ~~~~s~~~a-~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~ 381 (495)
T KOG2533|consen 303 NGGYSELQA-NLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGL 381 (495)
T ss_pred CCCcChHHh-ccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhh
Confidence 455788889 999999999999999999999999 666766666655554444 33333332333333334444445
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy69 91 GKSELNHQLFMTALVVILMASLSAH 115 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~ 115 (157)
....+....+.++...++.|.....
T Consensus 382 ~~~~~~~~~w~s~~~~g~~k~~~~~ 406 (495)
T KOG2533|consen 382 IATAIIALSWTSANLAGNTKALTTV 406 (495)
T ss_pred HHHHHHHHhhccccccchHHhHHHH
Confidence 5566777788888877776654443
No 241
>KOG2532|consensus
Probab=96.59 E-value=0.024 Score=44.73 Aligned_cols=115 Identities=11% Similarity=0.013 Sum_probs=71.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccc---------hhhhhhhHHHHHHHHHHHHhcC-HHHHHH----
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRK---------TTLQVASIPFFFGWLLMAFADD-VLQLCI---- 81 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk---------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---- 81 (157)
..+++..+. ++..++..+...+..+++|.++||.-+| ..-.++....+++.+..++.++ .....+
T Consensus 288 VL~f~v~~~-G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~ 366 (466)
T KOG2532|consen 288 VLGFDVRET-GFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLT 366 (466)
T ss_pred HhCCChhhh-hHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHH
Confidence 367888899 9999999999999999999999998663 1122333333333444444432 111111
Q ss_pred -HHHHHHhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 82 -GRFITGVAIGKSELNHQLFMTALV-VILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 82 -~~~l~G~~~g~~~~~~~~~~~~~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
...+.|+..++.. ..-.. .+++-+...+..+....+...+++.+.+.+.+
T Consensus 367 ~~~~~~g~~~~Gf~------~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~ 418 (466)
T KOG2532|consen 367 IAIGLSGFNISGFY------KNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT 418 (466)
T ss_pred HHHHHcccchhhhH------hhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence 1222333222221 12222 45566778888888888888888888888875
No 242
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=96.54 E-value=0.11 Score=41.08 Aligned_cols=108 Identities=14% Similarity=0.042 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccc--h-----hhhhhhHHHHHHHHHHHHh----------cCHHHHHHHHHHHHh
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRK--T-----TLQVASIPFFFGWLLMAFA----------DDVLQLCIGRFITGV 88 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk--~-----~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~G~ 88 (157)
.+.++...+..++.+++..++..+.+++ . -+-++..++..+.++.... .+.++++...+++++
T Consensus 327 ~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~ 406 (498)
T COG3104 327 AWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSF 406 (498)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence 4668888888888888888888885554 1 2344555555555544332 257888889999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 89 AIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 89 ~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
+.=+..+...+++.+..|++..+..++.+......+..++..+.+
T Consensus 407 gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 407 GELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 999999999999999999999999999888877777777665554
No 243
>KOG4332|consensus
Probab=96.49 E-value=0.003 Score=46.39 Aligned_cols=87 Identities=16% Similarity=0.145 Sum_probs=61.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
++....++ +.......-..++...+.|-++||-|||+.-+.-.+...+++ ++-.++++-+++++|.+-|+..+..+..
T Consensus 67 YgFgkG~I-gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSa 144 (454)
T KOG4332|consen 67 YGFGKGDI-GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSA 144 (454)
T ss_pred cCccCCcc-ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHH
Confidence 44555555 555555555566667788899999999997555444444443 3445788999999999999999988887
Q ss_pred HHHH-HHHHH
Q psy69 97 HQLF-MTALV 105 (157)
Q Consensus 97 ~~~~-~~~~~ 105 (157)
..+| +.|+.
T Consensus 145 FEsWliaEHn 154 (454)
T KOG4332|consen 145 FESWLIAEHN 154 (454)
T ss_pred HHHHHHHHhh
Confidence 6664 55665
No 244
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.31 E-value=0.23 Score=38.93 Aligned_cols=122 Identities=13% Similarity=0.019 Sum_probs=79.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHH---HHhcC-------HHHHHHHHHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLM---AFADD-------VLQLCIGRFIT 86 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~---~~~~~-------~~~~~~~~~l~ 86 (157)
.|+++... +..-+...+....+.....++.+|+|..+.=+++...-.....++ .+.+. ...++.+-++.
T Consensus 288 ~G~s~~~i-gi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~S 366 (432)
T PF06963_consen 288 QGYSPSVI-GIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALS 366 (432)
T ss_pred CCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHH
Confidence 47899999 999999999999999999999999998887666655433332222 22221 12222222222
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCc
Q psy69 87 GVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRESS 140 (157)
Q Consensus 87 G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (157)
=+|.=+......-+++|.+|+++|+..++..+...++. -+-..+...+.|++.
T Consensus 367 R~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf-~ll~~~~~ii~~~P~ 419 (432)
T PF06963_consen 367 RIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLF-ELLSFVLTIIFPRPS 419 (432)
T ss_pred HHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHH-HHHHHHHHhccCChH
Confidence 23333345667788899999999999999877777653 333344444555443
No 245
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=96.25 E-value=0.019 Score=44.39 Aligned_cols=90 Identities=14% Similarity=0.032 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhh-hHHHHHHHHHHHHhcC--H-HHHHHHHHHHHhhhhhhHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVA-SIPFFFGWLLMAFADD--V-LQLCIGRFITGVAIGKSELNHQLFM 101 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~-~~~~~~~~~~~~~~~~--~-~~~~~~~~l~G~~~g~~~~~~~~~~ 101 (157)
+...++..+...+-+++.|-++|+.|+||..... ..+..++.....+.++ + +..+++..+..++....+....++.
T Consensus 61 gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L 140 (438)
T COG2270 61 GYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSML 140 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHh
Confidence 7778888888889999999999999977665443 4444455555555544 4 4445577888888888889999999
Q ss_pred HHHHHHHHHHHHHH
Q psy69 102 TALVVILMASLSAH 115 (157)
Q Consensus 102 ~~~~p~~~r~~~~~ 115 (157)
.+..+++..++..+
T Consensus 141 ~~~~~k~~~~riS~ 154 (438)
T COG2270 141 PRLTTKDNMGRISG 154 (438)
T ss_pred hhhcCccccCcccc
Confidence 99998876665543
No 246
>KOG3626|consensus
Probab=96.06 E-value=0.003 Score=51.88 Aligned_cols=139 Identities=18% Similarity=0.107 Sum_probs=103.9
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc-------------------C
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD-------------------D 75 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~-------------------~ 75 (157)
+.+++++.+. +++.+.+-++..+...+..+...|..|.+.+-++.++++++.++.++-+ +
T Consensus 125 rRF~i~Ss~s-G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~ 203 (735)
T KOG3626|consen 125 RRFKISSSQS-GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENP 203 (735)
T ss_pred hhcCCCCCcc-eeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCC
Confidence 3477888889 9999999999999999999999999999999999999999988876420 0
Q ss_pred --------------------------------HH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy69 76 --------------------------------VL-QLCIGRFITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSI- 121 (157)
Q Consensus 76 --------------------------------~~-~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~- 121 (157)
++ .++++-++.|+|....++...+|+-|.+.+++-..-.++.....
T Consensus 204 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~ 283 (735)
T KOG3626|consen 204 SSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAI 283 (735)
T ss_pred ccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHH
Confidence 11 34567899999999999999999999998776555555444444
Q ss_pred ---HHHHHHHHHhhhccccC-CcccccCCCChhhhhh
Q psy69 122 ---GMCQGFSAVLLPQLHRE-SSHILVTPGEASWIGK 154 (157)
Q Consensus 122 ---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~ 154 (157)
.+|+.+|.+++....+. .+.......+..|+++
T Consensus 284 lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGA 320 (735)
T KOG3626|consen 284 LGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGA 320 (735)
T ss_pred hhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhH
Confidence 44555555555554443 3334455666777764
No 247
>PTZ00207 hypothetical protein; Provisional
Probab=96.02 E-value=0.12 Score=42.14 Aligned_cols=94 Identities=13% Similarity=0.070 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHhccch----h-----hhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHH
Q psy69 28 AASLGVISNPLGALLSGTIMEVWGRKT----T-----LQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQ 98 (157)
Q Consensus 28 ~~~~~~~g~~i~~~~~g~l~d~~grk~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~ 98 (157)
..++..+++.+|.+..|.+.....+|+ . +.+..+ +.++.++..+.-+...+.+..++.|++.|...+...
T Consensus 396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~ 474 (591)
T PTZ00207 396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA 474 (591)
T ss_pred ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence 677888999999999998873222222 1 222222 444444444443336788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 99 LFMTALVVILMASLSAHSVNMSIGM 123 (157)
Q Consensus 99 ~~~~~~~p~~~r~~~~~~~~~~~~~ 123 (157)
..++|++. ++-++.-+.......+
T Consensus 475 ~i~selFg-k~~g~~yN~~~~a~pi 498 (591)
T PTZ00207 475 LVTRTIFA-KDPAKHYNFCFLGSVL 498 (591)
T ss_pred HHHHHHhc-cchHHHhhHHhHHHHH
Confidence 99999998 6655555544443333
No 248
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=95.98 E-value=0.37 Score=38.20 Aligned_cols=115 Identities=11% Similarity=0.070 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh----cCH--------------------
Q psy69 22 QQVLFVAASLGVISNPLG-ALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA----DDV-------------------- 76 (157)
Q Consensus 22 ~~~~~~~~~~~~~g~~i~-~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~----~~~-------------------- 76 (157)
... .++-+...+-..+. .++.+++++|++|++.+.+....+.....+..+. ++.
T Consensus 43 e~i-~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~ 121 (472)
T TIGR00769 43 EII-PFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMG 121 (472)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHH
Confidence 455 66666665555554 8889999999999999887776666665554442 111
Q ss_pred -------HHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 77 -------LQLCIGRFITGVAIGKSEL-NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 77 -------~~~~~~~~l~G~~~g~~~~-~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
|...+.....-+-.....+ ....+.+|.+..++..|..+..+.+.++|..+++.+..++..
T Consensus 122 ~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 122 FIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222333333333344 678899999999999999999999999888888877777653
No 249
>KOG3762|consensus
Probab=95.97 E-value=0.018 Score=45.98 Aligned_cols=59 Identities=15% Similarity=0.127 Sum_probs=46.4
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHH-HHHHHHHHHHh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIP-FFFGWLLMAFA 73 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~-~~~~~~~~~~~ 73 (157)
..+.++++.+. +.+...-.+..+++.+++|+++||+.+||.++++..+ ...+.++..+.
T Consensus 38 ~kQLGl~p~~~-Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv 97 (618)
T KOG3762|consen 38 FKQLGLNPAVV-GTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV 97 (618)
T ss_pred HHHcCCCHHHh-hhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence 35689999999 9999999999999999999999999987666555544 44445555444
No 250
>KOG0252|consensus
Probab=95.85 E-value=0.0011 Score=51.72 Aligned_cols=101 Identities=10% Similarity=-0.037 Sum_probs=68.7
Q ss_pred HHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcC-H---HHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHH
Q psy69 36 NPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADD-V---LQLCIGRFITGV-AIGKSELNHQLFMTALVVILMA 110 (157)
Q Consensus 36 ~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~l~G~-~~g~~~~~~~~~~~~~~p~~~r 110 (157)
...|-.+...+.|++|||+..+.+.+.+.+..+..+...| . ...+++..+..+ +.-+.......+-+|.+|.+.|
T Consensus 361 ~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR 440 (538)
T KOG0252|consen 361 TVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVR 440 (538)
T ss_pred cCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHh
Confidence 3346677788999999999999999999888888776544 1 112222222222 1222345566778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 111 SLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
++.-++.....-+|..++.....++.
T Consensus 441 ~t~hGIsAA~GK~GAivg~~~F~~~t 466 (538)
T KOG0252|consen 441 STCHGISAASGKAGAIVGAFGFLYLT 466 (538)
T ss_pred hhhhhHHHHhccchHHHHHHHhhHhh
Confidence 99888777766666666665554443
No 251
>KOG0637|consensus
Probab=95.72 E-value=0.0051 Score=47.92 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=76.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH----hccchhhhhhhHH-HHHHHHHHHHhcCHH---------------
Q psy69 18 IIYKQQVLFVAASLGVISNPLGALLSGTIMEV----WGRKTTLQVASIP-FFFGWLLMAFADDVL--------------- 77 (157)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~----~grk~~~~~~~~~-~~~~~~~~~~~~~~~--------------- 77 (157)
+++.... +.+.-...+...+.+++.|..+|| |||||.++..... ..++.++..++++..
T Consensus 63 Gvphk~~-S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ra 141 (498)
T KOG0637|consen 63 GVPHKWS-SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRA 141 (498)
T ss_pred CCCcccc-cccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHH
Confidence 3444444 555555666777789999999996 9998887665544 455555555554321
Q ss_pred --HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Q psy69 78 --QLCIGRFITGVAIGKSELNHQLFMTALVVILMASL-SAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 78 --~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r~~-~~~~~~~~~~~~~~~~~~~~~ 133 (157)
..+++..+.=++....+...-++..|....+.+.+ +++......++|..+|....+
T Consensus 142 i~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 142 IVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 23334444445555667888899999998877776 888888888888777755543
No 252
>KOG3098|consensus
Probab=95.00 E-value=0.97 Score=35.76 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhHHHHHhH---hccchhhhhhhHHHHHHHHHHHHhc------------------CHHHHHHHHHHHH
Q psy69 29 ASLGVISNPLGALLSGTIMEV---WGRKTTLQVASIPFFFGWLLMAFAD------------------DVLQLCIGRFITG 87 (157)
Q Consensus 29 ~~~~~~g~~i~~~~~g~l~d~---~grk~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~l~G 87 (157)
.....+|..++....+.+.+| +||++++..+..+..+.+++..... ++...++..++.|
T Consensus 285 ~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G 364 (461)
T KOG3098|consen 285 SIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLG 364 (461)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHh
Confidence 334455666666777777654 7888888888887777766654421 2456677889999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 88 VAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQ 125 (157)
Q Consensus 88 ~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~ 125 (157)
++-...+.....++.+.. ++.|..+.++.....+++.
T Consensus 365 ~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s 401 (461)
T KOG3098|consen 365 FGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVAS 401 (461)
T ss_pred hHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHH
Confidence 999999999999999988 5555555554444444333
No 253
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=94.68 E-value=0.39 Score=37.66 Aligned_cols=106 Identities=16% Similarity=0.060 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccc-hhhhhhhH---HHHHHHHHHHHh---------cCHHHHHHHHHHHHhhhhh
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRK-TTLQVASI---PFFFGWLLMAFA---------DDVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk-~~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~~~~l~G~~~g~ 92 (157)
-.....+++|..+|..+..+.. .-++| +.+.+..+ ++....+++..- ++-+..++..++.|+..|.
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 4566678888888888654431 11222 12232233 333333333211 3456667789999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 93 SELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
..+....+..+.+++++|..+.........+|...|..+.
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888888888888887764
No 254
>KOG1479|consensus
Probab=93.72 E-value=0.46 Score=36.83 Aligned_cols=105 Identities=8% Similarity=-0.016 Sum_probs=73.3
Q ss_pred HHHHHH-HHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHH---------HhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 26 FVAASL-GVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMA---------FADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 26 ~~~~~~-~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
...... +++...+|.+...+..++ +||.. .+..++..+..-+.. +-.+-++.+....++|+..|-..+
T Consensus 285 ~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l-~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlts 362 (406)
T KOG1479|consen 285 LLLVFLSFNVFDLIGSILAALLTWP-DPRKL-TIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTS 362 (406)
T ss_pred HHHHHHHhHHHHHhhhhhhhcccCC-CCcee-hHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhh
Confidence 444455 888999998877777664 34433 333333222221221 124567788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
....+..+-+|++++..+..........|...|..+.
T Consensus 363 l~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 363 LIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred heehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999888887777777777776554
No 255
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=92.98 E-value=0.24 Score=37.66 Aligned_cols=83 Identities=19% Similarity=0.218 Sum_probs=61.5
Q ss_pred hhhhhhhHHHHHHHHHHHHhc---C------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q psy69 54 TTLQVASIPFFFGWLLMAFAD---D------VLQLCIGRFITGVAIGKSELNHQLFMTALVVIL---MASLSAHSVNMSI 121 (157)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~---~r~~~~~~~~~~~ 121 (157)
++++++.++..++.++..++. . ...+.++..+.++|.|+.-++..++..|.++++ .|.+..+++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 456777788888877744331 1 256778888999999999999999999999876 4555566778888
Q ss_pred HHHHHHHHHhhhccc
Q psy69 122 GMCQGFSAVLLPQLH 136 (157)
Q Consensus 122 ~~~~~~~~~~~~~~~ 136 (157)
++|..++....+++.
T Consensus 82 n~G~~~~~~~~~~i~ 96 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQ 96 (372)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred hhhhHhhcccchhhc
Confidence 888888877766664
No 256
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=91.94 E-value=0.061 Score=40.04 Aligned_cols=105 Identities=12% Similarity=0.003 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHh-ccchhhhh--hhHHHHHHHHHHHH----------hcCHHHHHHHHHHHHhhhhhhH
Q psy69 28 AASLGVISNPLGALLSGTIMEVW-GRKTTLQV--ASIPFFFGWLLMAF----------ADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 28 ~~~~~~~g~~i~~~~~g~l~d~~-grk~~~~~--~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
....++++..+|..+.++..-+. .+|..... ..+++....+++-. -++-++.++..+++|+..|...
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 45578899999999888753221 23333322 22222222222211 1244566777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
+....+..+..++++|..+..........|...|..+.
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp HHHH----------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888887777777776654
No 257
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=91.71 E-value=0.48 Score=37.03 Aligned_cols=116 Identities=12% Similarity=0.017 Sum_probs=76.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH----------hcCHHHHHHHHHHHH
Q psy69 18 IIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF----------ADDVLQLCIGRFITG 87 (157)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~G 87 (157)
|+++... +....+..++..++..+....-.+...|+++.++.++.++..+.... .++.+..+.--++..
T Consensus 251 ~fs~~f~-~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~ 329 (433)
T PF03092_consen 251 HFSPSFY-GTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEE 329 (433)
T ss_pred ccCHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHH
Confidence 4788877 88887788888888888887777777788887777666555443211 112222233445566
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy69 88 VAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQ 134 (157)
Q Consensus 88 ~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 134 (157)
+.....+.....+++|+.|+..-++..+......++|..++..+...
T Consensus 330 ~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~ 376 (433)
T PF03092_consen 330 VIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAF 376 (433)
T ss_pred HHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777889999998877777666665555555555444333
No 258
>KOG3574|consensus
Probab=91.58 E-value=1.3 Score=34.51 Aligned_cols=96 Identities=13% Similarity=0.157 Sum_probs=62.9
Q ss_pred HHhHHHHHh-----Hhccchhhhh-hhHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy69 40 ALLSGTIME-----VWGRKTTLQV-ASIPFFFGWLLMAFA-----------DDVLQLCIGRFITGVAIGKSELNHQLFMT 102 (157)
Q Consensus 40 ~~~~g~l~d-----~~grk~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~ 102 (157)
-+++.++.| |+||||.-+. +..+....+...+.. ++........++.-+..+....++-.+..
T Consensus 80 KllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwAL 159 (510)
T KOG3574|consen 80 KLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWAL 159 (510)
T ss_pred HHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 567888888 9999986332 222222222222221 12222223445555566666777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 103 ALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 103 ~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
.+..+++.+.++....++...|+.++..+...+
T Consensus 160 tmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL 192 (510)
T KOG3574|consen 160 TMLSRENLGYASTCQSVGQTAGYFLGNVVFLAL 192 (510)
T ss_pred HhcCHhhcCchhHHHHHHHhhhHHhhcceeeEe
Confidence 999999999999999999999999987765444
No 259
>KOG1330|consensus
Probab=90.16 E-value=0.2 Score=39.41 Aligned_cols=112 Identities=14% Similarity=0.146 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccc----hhhhhhhHHHHHHH-------HHHHH-hcCHHHHHHHHHHHHhhhhhh
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRK----TTLQVASIPFFFGW-------LLMAF-ADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk----~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~l~G~~~g~~ 93 (157)
.++..+...+..+|.+++|.++||+.|+ .......+..+.+. .+... ..+........+++|......
T Consensus 286 ~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~ 365 (493)
T KOG1330|consen 286 LIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWF 365 (493)
T ss_pred hhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Confidence 4556677778888999999999985442 11222222211111 11111 122223333445555554443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcccc
Q psy69 94 -ELNHQLFMTALVVILMASLSAHSVNMSIGM-CQGFSAVLLPQLHR 137 (157)
Q Consensus 94 -~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 137 (157)
.+.......|.+|++.|..+..+......+ |-.-++.+++.+.+
T Consensus 366 ~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd 411 (493)
T KOG1330|consen 366 NWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSD 411 (493)
T ss_pred ccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHH
Confidence 344556678899999999888866554443 33333335555543
No 260
>KOG3880|consensus
Probab=89.39 E-value=1.6 Score=33.09 Aligned_cols=110 Identities=13% Similarity=-0.001 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHH---HHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIP---FFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMT 102 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~ 102 (157)
-|.+..+.+|.+++.-......-+ .-+.+-+..+. +.+.-....+.++++..++..+..|+-.|..+....--+.
T Consensus 291 RwyqvlYQlGVFiSRSS~~~~~~p--~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~ 368 (409)
T KOG3880|consen 291 RWYQVLYQLGVFISRSSINLFTMP--YLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIH 368 (409)
T ss_pred hhhheeeeeeEEEEeccceEEech--HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHh
Confidence 677777777776644333222111 11111121222 2222233445678888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 103 ALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 103 ~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
+-.+++.|..+++...+.=.+|..++.++.-.+.|
T Consensus 369 ~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh~ 403 (409)
T KOG3880|consen 369 KETEPDVREFAMSAVSISDSIGIFLAGLLALPLHN 403 (409)
T ss_pred hcCCchHHHHhHhhheecchhhHHHHHHHhccchh
Confidence 99999999999998888888888888777665554
No 261
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=88.95 E-value=0.55 Score=38.64 Aligned_cols=54 Identities=20% Similarity=0.192 Sum_probs=40.0
Q ss_pred CcccccHHHHHHHHHHHHHH-HHHHHHHhHHHHHhHhcc--chhhhhhhHHHHHHHHH
Q psy69 15 DRRIIYKQQVLFVAASLGVI-SNPLGALLSGTIMEVWGR--KTTLQVASIPFFFGWLL 69 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~-g~~i~~~~~g~l~d~~gr--k~~~~~~~~~~~~~~~~ 69 (157)
+++++++.+. +++.....+ +..++.++.|+++||+++ |+.+.++.+...++.+.
T Consensus 359 ~~~g~s~~~a-g~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 359 NQYGISSAEA-NFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHcCCcHHHH-HHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 3578899998 888877665 678999999999999884 45666666555555433
No 262
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=87.07 E-value=2.8 Score=32.65 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy69 27 VAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTALVV 106 (157)
Q Consensus 27 ~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p 106 (157)
.+..+..+-..+..+.+.+..+|+..+.=.....++..++.++.+++++.+.-+++-.+.+++.|........+.+ .++
T Consensus 63 ~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~ 141 (402)
T PF02487_consen 63 AVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYG 141 (402)
T ss_pred HHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcC
Confidence 3444445556667788888889887655556666677778888888899988889999999999988877777644 444
Q ss_pred H
Q psy69 107 I 107 (157)
Q Consensus 107 ~ 107 (157)
+
T Consensus 142 ~ 142 (402)
T PF02487_consen 142 K 142 (402)
T ss_pred c
Confidence 3
No 263
>KOG0637|consensus
Probab=85.32 E-value=4.8 Score=32.01 Aligned_cols=79 Identities=11% Similarity=0.004 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy69 27 VAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTALV 105 (157)
Q Consensus 27 ~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~ 105 (157)
+-..++.+...+.+....++.||+|-|+.+..+...+.++..+.+..++..+....+-..|+-.+....+....+.+..
T Consensus 336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~ 414 (498)
T KOG0637|consen 336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA 414 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence 4455667777888999999999999777777777767777777777888888888898888777776666666666554
No 264
>KOG2563|consensus
Probab=84.59 E-value=0.2 Score=39.27 Aligned_cols=91 Identities=16% Similarity=-0.002 Sum_probs=56.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhcc-chhhhhhhHHHHHHHHHHH-Hh---cCHHHHHHHHHHHHhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGR-KTTLQVASIPFFFGWLLMA-FA---DDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~gr-k~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~l~G~~~g 91 (157)
.+++.... +++.....++.++++...|.++||.+. |.+++.......++..... .. .+.+.+...-.+.|.+..
T Consensus 296 sgY~~~~a-G~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~ 374 (480)
T KOG2563|consen 296 SGYEGVFA-GYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGT 374 (480)
T ss_pred ccCCcccc-chhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhc
Confidence 34455667 899999999999999999999999665 5555555555444432222 11 123344445556666666
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy69 92 KSELNHQLFMTALVVIL 108 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~ 108 (157)
+..++..-+-.|..-|.
T Consensus 375 ~~~Pig~ElgvE~TyPv 391 (480)
T KOG2563|consen 375 GYLPIGFELGVETTYPV 391 (480)
T ss_pred CCCCcceeeeeeecccc
Confidence 55555555555554333
No 265
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=84.36 E-value=11 Score=29.54 Aligned_cols=81 Identities=15% Similarity=0.106 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhh--HHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVAS--IPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTA 103 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~ 103 (157)
|.+-....+...++++..|++..++.+..-+.++. ++.+...+++.+.++.+...++..+.+.......++...-++.
T Consensus 288 G~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~ 367 (412)
T PF01770_consen 288 GAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAK 367 (412)
T ss_pred hHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777788889999999977777754444333 3344445567778899988888888887776666665555555
Q ss_pred HHH
Q psy69 104 LVV 106 (157)
Q Consensus 104 ~~p 106 (157)
...
T Consensus 368 ~l~ 370 (412)
T PF01770_consen 368 NLS 370 (412)
T ss_pred hcc
Confidence 443
No 266
>PRK03612 spermidine synthase; Provisional
Probab=83.35 E-value=22 Score=28.72 Aligned_cols=31 Identities=23% Similarity=0.104 Sum_probs=22.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH
Q psy69 18 IIYKQQVLFVAASLGVISNPLGALLSGTIMEV 49 (157)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~ 49 (157)
+-+..+. +.+.+.+..|..+|+.+.+++.++
T Consensus 46 G~s~~~~-~~ii~~fl~glalGs~l~~~~~~~ 76 (521)
T PRK03612 46 GDSVTQF-STVIGLMLFAMGVGALLSKYLLRD 76 (521)
T ss_pred CchHHHH-HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3345555 778888888999999888877643
No 267
>KOG1237|consensus
Probab=81.75 E-value=6.6 Score=32.12 Aligned_cols=65 Identities=12% Similarity=0.075 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy69 75 DVLQLCIGRFITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRES 139 (157)
Q Consensus 75 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
+..|.+-=.++.|++-........-+.-+-+|+++|+..++.+....++|..++.++.......+
T Consensus 457 Si~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t 521 (571)
T KOG1237|consen 457 SILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFST 521 (571)
T ss_pred eHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34666677889999988888888888889999999999999999999999999988887665544
No 268
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=79.24 E-value=6.1 Score=31.83 Aligned_cols=47 Identities=4% Similarity=-0.036 Sum_probs=35.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 89 AIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 89 ~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
-++-...++-.|...+..+++++.+.....++...|+.++..+...+
T Consensus 131 l~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 131 LCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLAL 177 (544)
T ss_pred HHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhh
Confidence 33344456667888888999999999999999999888886654333
No 269
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=78.81 E-value=11 Score=30.35 Aligned_cols=83 Identities=10% Similarity=0.029 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhH--HHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASI--PFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTA 103 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~ 103 (157)
|.+-.+..+...+.++..|++-.++.+.--+.++.+ +.+...+++..++|.+...++.++.+..+....++...-+++
T Consensus 301 G~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~ 380 (511)
T TIGR00806 301 GAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIAS 380 (511)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666677788999998776654333333333 333334556677899999999998888877777666666665
Q ss_pred HHHHH
Q psy69 104 LVVIL 108 (157)
Q Consensus 104 ~~p~~ 108 (157)
....+
T Consensus 381 ~L~~~ 385 (511)
T TIGR00806 381 SLSKE 385 (511)
T ss_pred Hhccc
Confidence 54433
No 270
>KOG3097|consensus
Probab=76.70 E-value=7.4 Score=29.78 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=54.3
Q ss_pred HHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy69 33 VISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTALVVIL 108 (157)
Q Consensus 33 ~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~ 108 (157)
....+.++++.+.+.+++|-|.++.++........ ..-+-+.+..++..-...|.+.+..+...-+|++++...+
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~y 142 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNY 142 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHHHHH
Confidence 34556678888899999999999888776654432 2233456677777888899999988877777777765433
No 271
>KOG1237|consensus
Probab=76.53 E-value=21 Score=29.28 Aligned_cols=117 Identities=11% Similarity=0.002 Sum_probs=73.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH-hccchhhhhhhHHHHHHHHHHHHhc----------------------
Q psy69 18 IIYKQQVLFVAASLGVISNPLGALLSGTIMEV-WGRKTTLQVASIPFFFGWLLMAFAD---------------------- 74 (157)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~-~grk~~~~~~~~~~~~~~~~~~~~~---------------------- 74 (157)
+.+...+ .-....+.--.....+.+++++|. +||-+++.++.++..++..+.....
T Consensus 69 ~~~~~~a-a~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~ 147 (571)
T KOG1237|consen 69 HASGGGA-ANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESP 147 (571)
T ss_pred ccchHHH-HHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCc
Confidence 3344444 444555555555677899999996 7888888888877777644332211
Q ss_pred C---HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH---HHHHH---HHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 75 D---VLQLCIGRFITGVAIGKSELNHQLFMTALVV---ILMAS---LSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 75 ~---~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p---~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
+ ...+....-+..+|.|+.-+....+-+|-++ ++.+. ....++......|..++..+..+.
T Consensus 148 s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyi 217 (571)
T KOG1237|consen 148 SKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYI 217 (571)
T ss_pred chHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 0 1244556667778888888888899998888 33222 334455555666666665555444
No 272
>KOG4332|consensus
Probab=75.10 E-value=33 Score=25.87 Aligned_cols=97 Identities=11% Similarity=0.042 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccc--hhhhhhhHHHHHHHHHHHH----hc---CHHHHHHHHHHHHhhhhhhHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRK--TTLQVASIPFFFGWLLMAF----AD---DVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk--~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
+.+.+.+.+..++|+-+...+..|-..| ..+.+...+......+... ++ +...-+++..+.-.+.|..++.
T Consensus 285 GfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPS 364 (454)
T KOG4332|consen 285 GFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPS 364 (454)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchH
Confidence 6677777788888888887777664443 3344444444333333222 12 2333345555555666777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 97 HQLFMTALVVILMASLSAHSVNMSIG 122 (157)
Q Consensus 97 ~~~~~~~~~p~~~r~~~~~~~~~~~~ 122 (157)
..-+-++..|.+.|+..++++.+-..
T Consensus 365 imkmRsqyIPEearstimNfFRvPLn 390 (454)
T KOG4332|consen 365 IMKMRSQYIPEEARSTIMNFFRVPLN 390 (454)
T ss_pred HHHHHHhhCCHHHHhhhhhheechhh
Confidence 88888899999999888876555444
No 273
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=74.94 E-value=17 Score=26.74 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhH-hccchhhh----hhhHHHHHHHHHHHH-hc----CHHHHHHHHHHHHhhhhhhHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEV-WGRKTTLQ----VASIPFFFGWLLMAF-AD----DVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~-~grk~~~~----~~~~~~~~~~~~~~~-~~----~~~~~~~~~~l~G~~~g~~~~ 95 (157)
......+..|..+|....|..... +.||+.+. .+.+..+++.++... .. +...+.+..++.|+..=+.++
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 445556667777888888877663 66666543 223333333333211 21 345566777777776544455
Q ss_pred HHHHH
Q psy69 96 NHQLF 100 (157)
Q Consensus 96 ~~~~~ 100 (157)
.....
T Consensus 224 ViL~l 228 (267)
T PF07672_consen 224 VILNL 228 (267)
T ss_pred HHhcC
Confidence 44433
No 274
>KOG3810|consensus
Probab=74.75 E-value=8.3 Score=29.84 Aligned_cols=115 Identities=11% Similarity=0.068 Sum_probs=72.1
Q ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhh
Q psy69 11 FCYLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAI 90 (157)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 90 (157)
+....+.++++.+...-+.-.-.-...+.-.+.=.+.|-...|++++.-.+.......+..+.++.+.+=+.-+..|...
T Consensus 30 yl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~t 109 (433)
T KOG3810|consen 30 YLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPAT 109 (433)
T ss_pred hccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHH
Confidence 33334455665555111111111223334445556889999999998887777777777777888776666666777665
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQG 126 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~ 126 (157)
.. ....++|+-+.++++++-+.++.-....-.|..
T Consensus 110 Aa-EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~ 144 (433)
T KOG3810|consen 110 AA-EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKF 144 (433)
T ss_pred HH-HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhH
Confidence 54 567778888889999887777754444433333
No 275
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=74.09 E-value=14 Score=22.64 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHhccchh
Q psy69 27 VAASLGVISNPLGALLSGTIMEVWGRKTT 55 (157)
Q Consensus 27 ~~~~~~~~g~~i~~~~~g~l~d~~grk~~ 55 (157)
.......++..++....+.+.|..+.+..
T Consensus 91 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 119 (141)
T TIGR00880 91 LMSAGIALGPLLGPPLGGVLAQFLGWRAP 119 (141)
T ss_pred HHHHhHHHHHHHhHHhHHHHhcccchHHH
Confidence 33344444455555555555554444333
No 276
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.40 E-value=20 Score=22.52 Aligned_cols=36 Identities=17% Similarity=0.067 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHh-ccchhhhhhhH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVW-GRKTTLQVASI 61 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~-grk~~~~~~~~ 61 (157)
.+-.+.-+++..+.....||+.||| |.++..++.++
T Consensus 45 a~klssefIsGilVGa~iG~llD~~agTsPwglIv~l 81 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFL 81 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 3455566677777778889999984 55555444333
No 277
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=72.31 E-value=25 Score=24.34 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhHHHHHhHhccch
Q psy69 31 LGVISNPLGALLSGTIMEVWGRKT 54 (157)
Q Consensus 31 ~~~~g~~i~~~~~g~l~d~~grk~ 54 (157)
.+.++..+++.+.|++.||..+|+
T Consensus 90 GyL~gfi~aa~l~G~l~~k~~~~~ 113 (184)
T COG1268 90 GYLIGFIIAAFLIGLLAEKIRKRN 113 (184)
T ss_pred hHHHHHHHHHHHHHHHHHhhhccc
Confidence 367788899999999999987533
No 278
>KOG3810|consensus
Probab=60.97 E-value=55 Score=25.57 Aligned_cols=90 Identities=13% Similarity=0.048 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHH--HHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPF--FFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTA 103 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~ 103 (157)
|..-....+..+++.+..|.+.-++.|+.-++++.... +...+++..+++.|+..++..+...-.....++...-+++
T Consensus 274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~ 353 (433)
T KOG3810|consen 274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR 353 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence 44455566778889999999988888875544444433 3333445566787777777777666666655565555565
Q ss_pred HHHHHHHHHHHH
Q psy69 104 LVVILMASLSAH 115 (157)
Q Consensus 104 ~~p~~~r~~~~~ 115 (157)
....|.-|...+
T Consensus 354 nL~~e~~gLvFG 365 (433)
T KOG3810|consen 354 NLSSELFGLVFG 365 (433)
T ss_pred hhhhhhheeeee
Confidence 554444443333
No 279
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=58.95 E-value=86 Score=25.08 Aligned_cols=95 Identities=13% Similarity=-0.016 Sum_probs=51.0
Q ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHH-HHh--cCHHHHHHHHHHHHhh
Q psy69 13 YLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLM-AFA--DDVLQLCIGRFITGVA 89 (157)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~l~G~~ 89 (157)
-....++++.+. ..+.+...+...+++++--....+.|-|-....+.-...++.... ... ........+-+..|+.
T Consensus 40 vg~a~~l~~~~~-~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi~p~i~~~~~~g~~~~~~~G~ii~ag~~ 118 (451)
T COG2233 40 VGLALGLSAEDT-AYLISADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFVAPMIAIGGTTGDGIAALLGGIIAAGLV 118 (451)
T ss_pred hccCCCCCHHHH-HHHHHHHHHHHHHHHHHHHhhccCcccCCCeeEechHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 334577898898 999999888899988887775553444443333333333333332 222 1244444444444444
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q psy69 90 IGKSELNHQLFMTALVVIL 108 (157)
Q Consensus 90 ~g~~~~~~~~~~~~~~p~~ 108 (157)
.-........++.+.+||-
T Consensus 119 ~~li~~~~~~~l~rlfPPv 137 (451)
T COG2233 119 YFLISPIVKIRLARLFPPV 137 (451)
T ss_pred HHHHHHHHHHHHHHhCCCc
Confidence 4333222222555555444
No 280
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=57.52 E-value=54 Score=21.76 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhHHHHHhHhccch
Q psy69 31 LGVISNPLGALLSGTIMEVWGRKT 54 (157)
Q Consensus 31 ~~~~g~~i~~~~~g~l~d~~grk~ 54 (157)
-+.+|..+.+.+.|++.+|..+++
T Consensus 61 Gyl~gf~~~a~i~g~~~~~~~~~~ 84 (148)
T PF02632_consen 61 GYLLGFPLAALIIGLLAERLKRSR 84 (148)
T ss_pred hHHHHHHHHHHHHHHHHHhccccc
Confidence 477888899999999999987764
No 281
>PRK02237 hypothetical protein; Provisional
Probab=52.41 E-value=39 Score=21.19 Aligned_cols=49 Identities=8% Similarity=-0.147 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHH
Q psy69 22 QQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMA 71 (157)
Q Consensus 22 ~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~ 71 (157)
... +-+...+.-..++.++++++..|+...-+-=.++..++.++..+..
T Consensus 56 ~~~-GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~ 104 (109)
T PRK02237 56 AAF-GRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIM 104 (109)
T ss_pred hhh-hhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhe
Confidence 335 6677777777788889999999987766665666666655554443
No 282
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=52.19 E-value=24 Score=22.08 Aligned_cols=49 Identities=8% Similarity=-0.120 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHH
Q psy69 22 QQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMA 71 (157)
Q Consensus 22 ~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~ 71 (157)
... +-+...+.-..++.++.+++..|+..+.+-=.++..++.++..+..
T Consensus 54 ~~f-GRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 54 AAF-GRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIIL 102 (107)
T ss_pred ccc-hhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheE
Confidence 445 6666777777888999999999987777666666666655554433
No 283
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=48.95 E-value=1.3e+02 Score=24.60 Aligned_cols=58 Identities=7% Similarity=-0.015 Sum_probs=46.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 80 CIGRFITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 80 ~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
++.-.+..+..-..+....++-+++..|...|+-+...|...++|......+.-++.+
T Consensus 409 I~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD 466 (544)
T PF13000_consen 409 IIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD 466 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence 3455666666666778888899999999999999999999999998888777666654
No 284
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=48.43 E-value=1.5e+02 Score=24.06 Aligned_cols=103 Identities=15% Similarity=0.077 Sum_probs=63.2
Q ss_pred HHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh--c-------CH----------------------HHHHHHH
Q psy69 35 SNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA--D-------DV----------------------LQLCIGR 83 (157)
Q Consensus 35 g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~--~-------~~----------------------~~~~~~~ 83 (157)
...+...+..+++++++|++++......+.....+.++. | +. |...+..
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 345567778999999999998877666655555544431 1 11 0011111
Q ss_pred HHHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 84 FITGVAIGKSEL-NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 84 ~l~G~~~g~~~~-~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
.+.-+-.....+ .-..+.+|.++.++..|.-...+.+.+++..++..+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111112122 356788888988888888888888888887777777666654
No 285
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=47.80 E-value=6.1 Score=32.03 Aligned_cols=135 Identities=16% Similarity=0.111 Sum_probs=0.0
Q ss_pred CCCccccccCCcccccHHHHHHHHHHHHHH-HHHHHHHhHHHHHhHhcc--chhhhhhhHHHHHHHHH---HHH--hc--
Q psy69 5 DTPLPIFCYLDRRIIYKQQVLFVAASLGVI-SNPLGALLSGTIMEVWGR--KTTLQVASIPFFFGWLL---MAF--AD-- 74 (157)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~~~g~l~d~~gr--k~~~~~~~~~~~~~~~~---~~~--~~-- 74 (157)
.+..|++.+. ++++++.++ +.+.....+ +..+|.+++|++.+|+.- |+...+..+...++.+. ..+ .+
T Consensus 325 ~tF~pKylE~-QF~~sas~A-~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~ 402 (539)
T PF03137_consen 325 ATFLPKYLES-QFGLSASQA-SLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNP 402 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHH-HhCCCHHHH-HHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCC
Confidence 3456776654 578888888 776655444 777899999999998653 44444333333332222 000 01
Q ss_pred -------CH----------------------------------------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy69 75 -------DV----------------------------------------LQLCIGRFITGVAIGKSELNHQLFMTALVVI 107 (157)
Q Consensus 75 -------~~----------------------------------------~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~ 107 (157)
++ ..+++..++.-+..+.........+-..+|+
T Consensus 403 ~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~ 482 (539)
T PF03137_consen 403 PIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPP 482 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCCh
Confidence 11 0111122222222233334444555677999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhhhccccCCcc
Q psy69 108 LMASLSAHSVNMSIG-MCQGFSAVLLPQLHRESSH 141 (157)
Q Consensus 108 ~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 141 (157)
++|+.+.++...... +|..-+|++.+.+.+.+..
T Consensus 483 ~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~tCl 517 (539)
T PF03137_consen 483 EQRSFALGVQWLIIRLLGFIPGPIIFGAIIDSTCL 517 (539)
T ss_dssp -----------------------------------
T ss_pred hhcchhhhHHHHHHHhhcCcchHHHHhHHHhhhhh
Confidence 999999997776655 4777888888888876653
No 286
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=43.78 E-value=78 Score=19.59 Aligned_cols=29 Identities=10% Similarity=0.024 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhHHHHHhHhccchhhhhh
Q psy69 31 LGVISNPLGALLSGTIMEVWGRKTTLQVA 59 (157)
Q Consensus 31 ~~~~g~~i~~~~~g~l~d~~grk~~~~~~ 59 (157)
...+..++|..++-|+=++++-++.+.+.
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~~~tl~ 79 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPFSWTLT 79 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHH
Confidence 33444444445555554467766644443
No 287
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=42.45 E-value=39 Score=20.44 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=13.5
Q ss_pred HHHHHHHHhHHHHHhHhccc
Q psy69 34 ISNPLGALLSGTIMEVWGRK 53 (157)
Q Consensus 34 ~g~~i~~~~~g~l~d~~grk 53 (157)
....+.+.+.|.+.||..||
T Consensus 86 ~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 86 AVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 44566788899999998876
No 288
>COG1811 Uncharacterized membrane protein, possible Na+ channel or pump [General function prediction only]
Probab=40.33 E-value=1.3e+02 Score=21.56 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHH
Q psy69 32 GVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCI 81 (157)
Q Consensus 32 ~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
..+|..+|..+...+.||+.+--.-..+.....++.-....+++....++
T Consensus 12 Il~G~iiG~l~~~klper~k~~l~~~~Gl~~l~iGI~m~~~~~n~~~~il 61 (228)
T COG1811 12 ILIGGIIGLLIGKKLPERIKDILMQCLGLAILGIGIKMALQAKNDIMILL 61 (228)
T ss_pred HHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHH
Confidence 34566677777777778776666666666666666555555666554433
No 289
>PF06237 DUF1011: Protein of unknown function (DUF1011); InterPro: IPR009357 This is a family of eukaryotic proteins, that include the receptor for porcine endogenous retrovirus subgroup A (PERV-A) [].
Probab=36.13 E-value=1.1e+02 Score=19.02 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=39.4
Q ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHH
Q psy69 4 SDTPLPIFCYLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLL 69 (157)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~ 69 (157)
+|..+|..+...-..++.... -+..+...+.+.+.+++.-++-.| .++..-..+.+....+..+
T Consensus 20 tNGvlPSVQsYSclPYG~~aY-HLa~tL~~iAnPlacfla~f~~~r-Sl~~l~~lt~~~~~~~~Y~ 83 (101)
T PF06237_consen 20 TNGVLPSVQSYSCLPYGNNAY-HLAVTLSSIANPLACFLAMFLPIR-SLRFLGVLTVLGTIFGAYI 83 (101)
T ss_pred HcCCcccchhhccccccchHH-HHHHHHHHHhhHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHH
Confidence 456677777766666666666 677778888888888888777544 3333333333333333333
No 290
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=36.08 E-value=1.4e+02 Score=20.48 Aligned_cols=36 Identities=8% Similarity=0.124 Sum_probs=21.6
Q ss_pred HHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHH
Q psy69 35 SNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLM 70 (157)
Q Consensus 35 g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~ 70 (157)
...+..++.-.+..|.++|..+.+...+..+...++
T Consensus 40 ~ali~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~ 75 (186)
T PF09605_consen 40 AALICGIVYMLMVAKVPKRGAFLIMGIIMGLIFFLM 75 (186)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 344455556667788888877666555554444333
No 291
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=35.61 E-value=1.3e+02 Score=19.69 Aligned_cols=11 Identities=18% Similarity=0.072 Sum_probs=5.2
Q ss_pred HHHHHHhhhhh
Q psy69 82 GRFITGVAIGK 92 (157)
Q Consensus 82 ~~~l~G~~~g~ 92 (157)
.|.+.|+..+.
T Consensus 111 ~Rvllgl~~al 121 (142)
T PF11712_consen 111 YRVLLGLFGAL 121 (142)
T ss_pred HHHHHHHHHHH
Confidence 45555544443
No 292
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=33.60 E-value=2.4e+02 Score=22.18 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=24.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh
Q psy69 19 IYKQQVLFVAASLGVISNPLGALLSGTIMEVW 50 (157)
Q Consensus 19 ~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~ 50 (157)
+++.+. ....+...+...+++++-+...++.
T Consensus 34 l~~~~~-~~li~at~~~sgi~Tllq~~~~~~~ 64 (415)
T TIGR00801 34 LSAEQT-QYLVSISLLTSGIGTLLQLFRTGGQ 64 (415)
T ss_pred CCHHHH-HHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 677778 8888888888889999888876654
No 293
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=33.50 E-value=1.3e+02 Score=21.57 Aligned_cols=59 Identities=19% Similarity=0.186 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhh
Q psy69 32 GVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 32 ~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g 91 (157)
..+|..+|..+...+.||+.+.-....+.....++.-...-.++... ++.-.+.|--.|
T Consensus 11 Il~G~~iG~~~~~~i~~~~~~~l~~~~Gl~~l~iGi~~~~~~~~~~~-vi~slvlG~iiG 69 (226)
T PF04474_consen 11 ILLGGLIGLLLGRRIPERIKDTLMQALGLCVLAIGISMALKGQNPLL-VILSLVLGTIIG 69 (226)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhhHHHHHHHHHHHHccCccHH-HHHHHHHHHHHH
Confidence 44666677777777777766665555555555554333332334433 333344443333
No 294
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=30.03 E-value=2e+02 Score=22.86 Aligned_cols=35 Identities=11% Similarity=0.033 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHH
Q psy69 29 ASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPF 63 (157)
Q Consensus 29 ~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~ 63 (157)
...-.+..++.++..|...||..|++....+.+.-
T Consensus 44 gl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Q 78 (432)
T PF06963_consen 44 GLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQ 78 (432)
T ss_pred HHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHH
Confidence 33344556677888889999999998876665443
No 295
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=28.24 E-value=3e+02 Score=21.79 Aligned_cols=27 Identities=4% Similarity=-0.133 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy69 76 VLQLCIGRFITGVAIGKSELNHQLFMT 102 (157)
Q Consensus 76 ~~~~~~~~~l~G~~~g~~~~~~~~~~~ 102 (157)
++..++.-++.|++.+..+.....+.+
T Consensus 106 f~~~~~~v~~~g~~~~~~q~s~~gla~ 132 (437)
T TIGR00939 106 FVTTMASVVIINSGMALLQGSLFGLAG 132 (437)
T ss_pred HHHHHHHHHHHHhhhhhhcccchhhcc
Confidence 445555666777777776666666554
No 296
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=26.54 E-value=1.3e+02 Score=21.87 Aligned_cols=27 Identities=15% Similarity=-0.013 Sum_probs=19.8
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy69 81 IGRFITGVAIGKSELNHQLFMTALVVI 107 (157)
Q Consensus 81 ~~~~l~G~~~g~~~~~~~~~~~~~~p~ 107 (157)
..-+-.|.|.+..++....-+.+.+|.
T Consensus 176 ALAMasGvGSgSMMaAa~~aL~~~~P~ 202 (241)
T PF11299_consen 176 ALAMASGVGSGSMMAAASGALAAAYPE 202 (241)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHCcc
Confidence 344557888888888887778888863
No 297
>KOG3097|consensus
Probab=25.26 E-value=3.3e+02 Score=21.25 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh----cCHHHHHHHHHHHHhhhhh
Q psy69 21 KQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA----DDVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 21 ~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~G~~~g~ 92 (157)
-... +.....+.++..+.+.+.|.+..++||-+....+-..-..-.....++ .+.+.+.+.-.+.|.+-+.
T Consensus 309 v~~i-gf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l~li~~~~~w~~~~~~~~i~y~~aalwgv~d~v 383 (390)
T KOG3097|consen 309 VSRI-GFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLLLITILFFWAPNPQDSWIFYVAAALWGVGDAV 383 (390)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHhcccCCCCceEEEeehhhcCccHHH
Confidence 3455 777788889989999999999999999988776655533333333332 1333344444555555443
No 298
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=24.61 E-value=1.2e+02 Score=15.90 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=16.2
Q ss_pred HHHhHhccchhhhhhhHHHHHHHHHHH
Q psy69 45 TIMEVWGRKTTLQVASIPFFFGWLLMA 71 (157)
Q Consensus 45 ~l~d~~grk~~~~~~~~~~~~~~~~~~ 71 (157)
-..+|+-|.+.-+++.++.++..++..
T Consensus 7 ~~~~~f~~nk~a~~gl~il~~~vl~ai 33 (56)
T PF12911_consen 7 DAWRRFRRNKLAVIGLIILLILVLLAI 33 (56)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 344677777777777666555444433
No 299
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=24.49 E-value=2.4e+02 Score=19.44 Aligned_cols=30 Identities=7% Similarity=-0.027 Sum_probs=16.4
Q ss_pred HHHHHHHhHHHHHhHhccchhhhhhhHHHH
Q psy69 35 SNPLGALLSGTIMEVWGRKTTLQVASIPFF 64 (157)
Q Consensus 35 g~~i~~~~~g~l~d~~grk~~~~~~~~~~~ 64 (157)
...++.++.-.+..|.+|+..+.+..++..
T Consensus 42 ~al~~g~vyml~~~KV~K~G~~~i~~~i~g 71 (189)
T TIGR02185 42 TAFLVGIIFFLMVAKVPKRGVIFIFGILLG 71 (189)
T ss_pred HHHHHhHHHhhhhhhcCCccHHHHHHHHHH
Confidence 333444445566677777766555444433
No 300
>PF11283 DUF3084: Protein of unknown function (DUF3084); InterPro: IPR021435 This bacterial family of proteins has no known function.
Probab=22.29 E-value=1.8e+02 Score=17.14 Aligned_cols=19 Identities=26% Similarity=0.186 Sum_probs=11.3
Q ss_pred HHhHHHHHhHhccchhhhh
Q psy69 40 ALLSGTIMEVWGRKTTLQV 58 (157)
Q Consensus 40 ~~~~g~l~d~~grk~~~~~ 58 (157)
+.++-.+..|+|+|+.-++
T Consensus 17 A~~GD~iG~kvGKkrlslF 35 (79)
T PF11283_consen 17 AYLGDRIGSKVGKKRLSLF 35 (79)
T ss_pred HHHHHHHHHHHhHHHhhhh
Confidence 4555556666777766444
No 301
>COG2119 Predicted membrane protein [Function unknown]
Probab=21.76 E-value=2.9e+02 Score=19.30 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=23.1
Q ss_pred HHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHH
Q psy69 33 VISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGW 67 (157)
Q Consensus 33 ~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~ 67 (157)
.+...++...+.++++|+..|.+-..+.+++.+..
T Consensus 144 ~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fa 178 (190)
T COG2119 144 ILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFA 178 (190)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 34455666777788888888877766666554443
No 302
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=21.73 E-value=2e+02 Score=17.39 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy69 77 LQLCIGRFITGVAIGKSELNHQLFMTALVVILMA 110 (157)
Q Consensus 77 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r 110 (157)
+=++++|.+.|-+.+..-.....+..|..|...-
T Consensus 32 ~RL~iGR~ilGs~~S~~Aga~Li~~Pdl~plAv~ 65 (89)
T PF04550_consen 32 LRLFIGRVILGSAVSVVAGAALIQFPDLPPLAVI 65 (89)
T ss_pred hhHHhHHHHHhhHHHHHHHHHHhcCCCCCHHHHH
Confidence 3345667776666666555555555666544443
No 303
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=21.49 E-value=2.1e+02 Score=21.70 Aligned_cols=48 Identities=10% Similarity=0.011 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA 73 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~ 73 (157)
.+.....++|..++....+++-|++|....+.+..+.+.++.+.....
T Consensus 75 ~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 75 NWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 466667788888888888899888888888887777777776655543
No 304
>KOG3626|consensus
Probab=20.36 E-value=69 Score=27.32 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=34.9
Q ss_pred CCccccccCCcccccHHHHHHHHHHHH-HHHHHHHHHhHHHHHhHhcc--chhhhhhhH
Q psy69 6 TPLPIFCYLDRRIIYKQQVLFVAASLG-VISNPLGALLSGTIMEVWGR--KTTLQVASI 61 (157)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~i~~~~~g~l~d~~gr--k~~~~~~~~ 61 (157)
+.+|++.+ .+++.++..+ ..+.... .-+..+|.+++|++..|+.- |....+..+
T Consensus 413 tFlPKyLE-~Qfg~sas~A-n~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~ 469 (735)
T KOG3626|consen 413 TFLPKYLE-TQFGISASLA-NILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIV 469 (735)
T ss_pred HhhHHHHH-HHcCCCHHHH-HHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHH
Confidence 44666554 3477888877 7666444 44566899999999998654 344333333
Done!