RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy69
(157 letters)
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 42.7 bits (101), Expect = 2e-05
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 37 PLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADD--VLQLCIGRFITGVAIG 91
+G+L +G + + +GRK +L + ++ F G LL FA L +GR I G+ +G
Sbjct: 60 LIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVG 116
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 40.0 bits (94), Expect = 2e-04
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 25 LFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRF 84
LF A +G+ GAL G + + GR+ L + + F LL A A +V QL I RF
Sbjct: 57 LFSAGLIGMA---FGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRF 113
Query: 85 ITGVAIG 91
+ G+ +G
Sbjct: 114 LAGLGLG 120
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 39.2 bits (92), Expect = 4e-04
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 11 FCYLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLM 70
D ++ +G +GAL +G + + +GRK +L + ++ F G +LM
Sbjct: 62 SANSDSYSSSLWGLVVSIFLVGGF---IGALFAGWLSDRFGRKKSLLIIALLFVIGAILM 118
Query: 71 AFADDVL---QLCIGRFITGVAIG 91
A L L +GR + G+ +G
Sbjct: 119 GLAAFALSVEMLIVGRVLLGIGVG 142
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 36.1 bits (84), Expect = 0.004
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 28 AASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITG 87
S + LG+LL+G + + +GR+ L + + F G LL+AFA + L +GRF+ G
Sbjct: 39 IVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLG 98
Query: 88 VAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAV 130
+ G A ++ ++G+ +
Sbjct: 99 LGGG-------ALYPAAAALIAEWFPPKERGRALGLFSAGFGL 134
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 34.5 bits (79), Expect = 0.015
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 30 SLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVA 89
S +IS GAL+ G + +GR+ + + + F G L FA + + I R + G+
Sbjct: 54 SAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIG 113
Query: 90 IG 91
+G
Sbjct: 114 MG 115
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 33.1 bits (76), Expect = 0.051
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 28 AASL---GVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRF 84
AASL IS G LL G + + +GR+ + ++ + F G L FA L I R
Sbjct: 57 AASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARL 116
Query: 85 ITGVAI 90
+ G+ +
Sbjct: 117 VIGMGM 122
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 32.6 bits (75), Expect = 0.055
Identities = 16/54 (29%), Positives = 21/54 (38%)
Query: 38 LGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIG 91
LGA L + R+ L F LL A A L + R + G+A G
Sbjct: 63 LGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHG 116
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 32.6 bits (75), Expect = 0.061
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFI 85
F A LG++ GALL G + + GRK L V+ F L A A D L + R +
Sbjct: 56 FSAGILGLL---PGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLL 112
Query: 86 TGVAIG 91
TGV +G
Sbjct: 113 TGVGLG 118
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 30.9 bits (70), Expect = 0.21
Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Query: 28 AASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITG 87
+ + L L+G + + +GR+ L + + F G LL+ FA + L + R + G
Sbjct: 37 LLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQG 96
Query: 88 VAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAV 130
+ G A ++ ++G+ +
Sbjct: 97 LGGG-------ALFPAAAALIADWFPPEERGRALGLLSAGFGL 132
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 31.0 bits (71), Expect = 0.23
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 38 LGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIG 91
LG LL G + + +GRK L F G L M + + QL + RF+ A+G
Sbjct: 56 LGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQ--AVG 107
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 30.7 bits (69), Expect = 0.28
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 29 ASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGV 88
A+ I P G L G + + +GRK + + + + G L A V+ L + RFI G+
Sbjct: 59 ATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGM 118
Query: 89 AI 90
+
Sbjct: 119 GM 120
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 30.0 bits (68), Expect = 0.45
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 38 LGALLSGTIMEVWGRKTTLQVAS-IPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELN 96
LG+ + G + + +GRK L +++ + G L AF+ + + R + G+ IG +
Sbjct: 142 LGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVL-TAFSPNYTVFLVFRLLVGMGIGGIWVQ 200
Query: 97 HQLFMTALV 105
+ T +
Sbjct: 201 AVVLNTEFL 209
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 28.8 bits (65), Expect = 1.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 41 LLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIG 91
L +G I + GRK + F LL + A+ GRF+ G+ G
Sbjct: 56 LFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAG 106
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 28.7 bits (65), Expect = 1.2
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 27 VAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA--DDVLQLCIGRF 84
V +G I+ LGA L + + +G+K T + + G +L+ F + +
Sbjct: 261 VLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVV 320
Query: 85 ITGVAIG 91
+ G+ +G
Sbjct: 321 LAGIGLG 327
>gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional.
Length = 434
Score = 28.0 bits (63), Expect = 2.1
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 11/52 (21%)
Query: 22 QQV-LFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF 72
QQV + AA LG + L LS M WG + IPF G L++ F
Sbjct: 162 QQVAVVFAALLGYL---LNQWLSPAQMAEWGWR-------IPFLIGCLIVPF 203
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 26.8 bits (60), Expect = 3.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 38 LGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVA 89
+ + LSG + + +GRK L V F + A + ++ L I RF+ G
Sbjct: 13 IYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFG 64
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 27.0 bits (60), Expect = 5.1
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFF 64
F AS +I +G L G +GR+ +L++A++ FF
Sbjct: 59 FCVAS-ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFF 96
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.139 0.420
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,931,694
Number of extensions: 713402
Number of successful extensions: 934
Number of sequences better than 10.0: 1
Number of HSP's gapped: 927
Number of HSP's successfully gapped: 66
Length of query: 157
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 68
Effective length of database: 6,990,096
Effective search space: 475326528
Effective search space used: 475326528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.0 bits)