RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy69
         (157 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.4 bits (68), Expect = 0.23
 Identities = 36/163 (22%), Positives = 61/163 (37%), Gaps = 43/163 (26%)

Query: 27  VAASL--G----VISNPLGALLSGTIMEVWGRK----TTLQVASIPF-----FFGW--L- 68
           V  SL  G    V+S P  +L     + +  RK    + L  + IPF      F    L 
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYG---LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422

Query: 69  --------LMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTA----LVVILMASLSAHS 116
                   L+  A D++   + +    V+    ++   ++ T     L       LS  S
Sbjct: 423 VASPFHSHLLVPASDLINKDLVK--NNVSFNAKDIQIPVYDTFDGSDL-----RVLSG-S 474

Query: 117 VNMSIGMCQGFSAVLLPQLHR-ESSHILV-TPGEASWIGKISS 157
           ++  I  C     V      + +++HIL   PG AS +G ++ 
Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTH 517


>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
           symport, sugar transport, transmembrane, formylation;
           2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
           1pv6_A 2cfp_A 2v8n_A 2y5y_A*
          Length = 417

 Score = 30.3 bits (68), Expect = 0.28
 Identities = 11/62 (17%), Positives = 24/62 (38%)

Query: 30  SLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVA 89
           ++G + N      +  I+   G K  L +A        +  +FA   L++ I + +    
Sbjct: 266 TMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFE 325

Query: 90  IG 91
           + 
Sbjct: 326 VP 327


>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
           transporter; 3.50A {Escherichia coli}
          Length = 375

 Score = 29.1 bits (66), Expect = 0.57
 Identities = 11/54 (20%), Positives = 19/54 (35%)

Query: 38  LGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIG 91
           +  L  G I +  GR+  + V    F    L+      +  L     + G+  G
Sbjct: 50  VSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTG 103


>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer
          complex, cytochrome BC1 complex,
          mitochondrialtransmembrane complex; HET: M3L SUC 6PH
          UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
          cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H*
          1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
          Length = 93

 Score = 24.8 bits (54), Expect = 6.4
 Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 1/41 (2%)

Query: 36 NPLGALLSGTIMEVWGR-KTTLQVASIPFFFGWLLMAFADD 75
           PL  +    +   + R K+      IP    W      ++
Sbjct: 34 KPLQGIFHNAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNE 74


>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
           sapiens} PDB: 3p40_A*
          Length = 404

 Score = 26.0 bits (57), Expect = 7.3
 Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 8/31 (25%)

Query: 35  SNPLGALLSGTIMEVWGRKTTLQVASIPFFF 65
            N  G  LS         +  LQV+  P + 
Sbjct: 97  RNKFGTALS--------NRIRLQVSKSPLWP 119


>3nap_B Capsid protein; insect cripavirus, icosahedral virus; 2.50A
           {Triatoma virus}
          Length = 255

 Score = 25.6 bits (55), Expect = 7.6
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 55  TLQVASIPFFFGWLLMAF--ADDVLQLCIGRFITGVAIGKSELNHQLF 100
            +QV + PF  G L++A     D+L L     ++        L H   
Sbjct: 136 HIQVNAHPFQCGRLVLAAVPVPDILPLHRLNMLSFDVSNVITLPHVQL 183


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0613    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,305,959
Number of extensions: 123006
Number of successful extensions: 314
Number of sequences better than 10.0: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 10
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.4 bits)