BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6902
(86 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To
Murine Cox-2
Length = 604
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C +NPC + G C T D+ YKC C+ TG+YG+ C
Sbjct: 19 NPCCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 54
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To
Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C +NPC + G C T D+ YKC C+ TG+YG+ C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 37
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed
With A Selective Inhibitor, Sc-558
Length = 587
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C +NPC + G C T D+ YKC C+ TG+YG+ C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 37
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site
Of Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound
23d-(R)
Length = 552
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C +NPC + G C T D+ YKC C+ TG+YG+ C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 37
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C +NPC + G C T D+ YKC C+ TG+YG+ C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 37
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C +NPC + G C T D+ YKC C+ TG+YG+ C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 37
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
C +NPC + G C T D+ YKC C+ TG+YG+ C
Sbjct: 10 CCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 43
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
C +NPC + G C T D+ YKC C+ TG+YG+ C
Sbjct: 27 CCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 60
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
C +NPC + G C T D+ YKC C+ TG+YG+ C
Sbjct: 9 CCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 42
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
C +NPC + G C T D+ YKC C+ TG+YG+ C
Sbjct: 9 CCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 42
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
C +NPC + G C T D+ YKC C+ TG+YG+ C
Sbjct: 8 CCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 41
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
C +NPC + G C T D+ YKC C+ TG+YG+ C
Sbjct: 8 CCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 41
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C +NPC + G C + Y C CSGTGY G+ C+
Sbjct: 397 CLSNPCKNNGMCRDGWNR---YVCDCSGTGYLGRSCE 430
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
C + C + G C Q + G+ C CS T + G C
Sbjct: 804 CQEDSCSNQGVCLQQWD---GFSCDCSMTSFSGPLC 836
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C +NPC + G C + Y C CSGTGY G+ C+
Sbjct: 622 CLSNPCKNNGMCRDGWNR---YVCDCSGTGYLGRSCE 655
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
C + C + G C Q + G+ C CS T + G C
Sbjct: 1020 CQEDSCSNQGVCLQQWD---GFSCDCSMTSFSGPLC 1052
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 55 CYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
C +GG C+ D+ C CS TG+ GK C
Sbjct: 198 CLNGGVCS-VVDDQA--VCDCSRTGFRGKDC 225
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C +NPC + G C + Y C CSGTGY G+ C+
Sbjct: 622 CLSNPCKNNGMCRDGWNR---YVCDCSGTGYLGRSCE 655
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
C + C + G C Q + G+ C CS T + G C
Sbjct: 1029 CQEDSCSNQGVCLQQWD---GFSCDCSMTSFSGPLC 1061
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 55 CYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
C +GG C+ D+ C CS TG+ GK C
Sbjct: 198 CLNGGVCS-VVDDQA--VCDCSRTGFRGKDC 225
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C PC H G C + DR Y+C C+ TGY G C
Sbjct: 34 NPCCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 69
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C PC H G C + DR Y+C C+ TGY G C
Sbjct: 3 NPCCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 38
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese
Protoporphyrin Ix- Reconstituted Ovine Prostaglandin H2
Synthase-1 Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese
Protoporphyrin Ix- Reconstituted Ovine Prostaglandin H2
Synthase-1 Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C PC H G C + DR Y+C C+ TGY G C
Sbjct: 3 NPCCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 38
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Alclofenac
Length = 551
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C PC H G C + DR Y+C C+ TGY G C
Sbjct: 2 NPCCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 37
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C PC H G C + DR Y+C C+ TGY G C
Sbjct: 2 NPCCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 37
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C PC H G C + DR Y+C C+ TGY G C
Sbjct: 3 NPCCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 38
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C PC H G C + DR Y+C C+ TGY G C
Sbjct: 14 NPCCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 49
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant
Of Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C PC H G C + DR Y+C C+ TGY G C
Sbjct: 34 NPCCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 69
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C PC H G C + DR Y+C C+ TGY G C
Sbjct: 2 NPCCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 37
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From
The Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From
The Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C PC H G C + DR Y+C C+ TGY G C
Sbjct: 10 NPCCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 45
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin
Endoperoxide H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C PC H G C + DR Y+C C+ TGY G C
Sbjct: 10 NPCCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 45
>pdb|4BDW|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii In Complex With Holmium
pdb|4BDX|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii
Length = 85
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
AC TNPC HGGRC + R C C GY G C
Sbjct: 46 QACRTNPCLHGGRCLEVEGHRL---CHCP-VGYTGPFC 79
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Query: 11 PGCRIQDNQCICGKGCYPEYKFITQE-----ECMTALKGKR----QNACDTNPCYHGGRC 61
P C I N+C+ C + + Q CM +G + C ++PC H GRC
Sbjct: 39 PRCEIDVNECV-SNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRC 97
Query: 62 TQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ ++C C TG+ G CQ
Sbjct: 98 LDKINE---FQCECP-TGFTGHLCQ 118
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 52 TNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
NPC H G+C T ++C+C GY G +C+
Sbjct: 12 ANPCEHAGKCINTL---GSFECQCL-QGYTGPRCE 42
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And
Tgf-A
Length = 39
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ C++NPC +GG C D Y+C C G+ GK C+
Sbjct: 4 DQCESNPCLNGGSCK---DDINSYECWCP-FGFEGKNCE 38
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ C+ NPC +GG C D Y+C C G+ GK C+
Sbjct: 49 DQCEPNPCLNGGLCK---DDINSYECWCQ-VGFEGKNCE 83
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 4 CDPAHVRPGCRIQDNQCICGKGCYPEYKFITQE-----ECMTALKGKR----QNACDTNP 54
C + P C I N+C+ C + + Q CM +G + C ++P
Sbjct: 30 CLQGYTGPRCEIDVNECV-SNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSP 88
Query: 55 CYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C H GRC + ++C C TG+ G CQ
Sbjct: 89 CLHNGRCLDKINE---FQCECP-TGFTGHLCQ 116
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 52 TNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
NPC H G+C T ++C+C GY G +C+
Sbjct: 10 ANPCEHAGKCINTL---GSFECQCL-QGYTGPRCE 40
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
N C+ PC +GG CT + Y C C G + G+ CQ
Sbjct: 98 NECEVEPCKNGGICTDLVAN---YSCECPGE-FMGRNCQ 132
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 50 CDTNPCYHGGRC--TQTFQDRT--GYKCRCSGTGYYGKKCQ 86
C NPC++GG C ++ ++ T GY C+C G+ G CQ
Sbjct: 55 CTPNPCHNGGTCEISEAYRGDTFIGYVCKCP-RGFNGIHCQ 94
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
C + C + G C Q + G+ C CS T + G C
Sbjct: 188 CQEDSCSNQGVCLQQWD---GFSCDCSMTSFSGPLC 220
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C+ NPC +GG C D Y+C C G+ GK C+
Sbjct: 51 CEPNPCLNGGLCK---XDINSYECWCQ-VGFEGKNCE 83
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ C + PC H G C + GY C CS GY G C+
Sbjct: 6 SPCISQPCLHNGSCQDSIW---GYTCTCS-PGYEGSNCE 40
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 27 YPEYKF-ITQEECMTALKGKRQNACD 51
Y +Y F +T+ E MTALK K CD
Sbjct: 623 YADYYFKVTKSEHMTALKKKFNRICD 648
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 26 CYPEYKFITQEECMTALKGKRQNACDTN-PCYHGGRCTQTFQDRTGYKCRCSGTGYYGKK 84
C ++ + + L K N C T+ PC +GG C+ T D+ Y+C C GY G
Sbjct: 110 CNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDK--YQCSCP-EGYSGPN 166
Query: 85 CQ 86
C+
Sbjct: 167 CE 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.494
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,003,235
Number of Sequences: 62578
Number of extensions: 105853
Number of successful extensions: 272
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 79
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)