BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6902
(86 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P33450|FAT_DROME Cadherin-related tumor suppressor OS=Drosophila melanogaster GN=ft
PE=1 SV=3
Length = 5147
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 35/113 (30%)
Query: 5 DPAHVRPGCRI--QDNQCIC-----GKGCYPEYKFITQEE-------------------- 37
+P H + CR D QC+C GK C E + +
Sbjct: 4020 NPCHSQVQCRRLGSDFQCMCPANRDGKHCEKERSDVCYSKPCRNGGSCQRSPDGSSYFCL 4079
Query: 38 CMTALKGKR----QNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C +G + ++C NPC HGG C + GYKC C+ G YG+ C+
Sbjct: 4080 CRPGFRGNQCESVSDSCRPNPCLHGGLCVSL---KPGYKCNCT-PGRYGRHCE 4128
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 17/82 (20%)
Query: 6 PAHVRPGCRI-QDNQCICGKGCYPEYKFITQEECMTALKGKRQNACDTNPCYHGGRCTQT 64
PA V G R+ D C C G + E+C +RQ+ C NPC+ +C +
Sbjct: 3984 PALVLSGPRVVHDYSCQCTSG-------FSGEQC-----SRRQDPCLPNPCHSQVQCRRL 4031
Query: 65 FQDRTGYKCRCSGTGYYGKKCQ 86
D ++C C GK C+
Sbjct: 4032 GSD---FQCMCPAN-RDGKHCE 4049
>sp|P70682|PGH2_CAVPO Prostaglandin G/H synthase 2 OS=Cavia porcellus GN=PTGS2 PE=2
SV=1
Length = 604
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C +NPC + G C DR YKC C+ TGYYG+ C
Sbjct: 19 NPCCSNPCQNRGECLSVGFDR--YKCDCTRTGYYGENC 54
>sp|Q05769|PGH2_MOUSE Prostaglandin G/H synthase 2 OS=Mus musculus GN=Ptgs2 PE=1 SV=1
Length = 604
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C +NPC + G C T D+ YKC C+ TG+YG+ C
Sbjct: 19 NPCCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENC 54
>sp|Q0V8T5|CTP5B_RAT Contactin-associated protein like 5-2 OS=Rattus norvegicus
GN=Cntnap5b PE=2 SV=1
Length = 1292
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 47 QNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
++ C N C HGG CTQT+ T + C CS TGY G C
Sbjct: 547 KDRCLPNYCEHGGHCTQTW---TSFYCNCSDTGYTGATCH 583
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 55 CYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C++GG+C + GY C C+ + + G CQ
Sbjct: 954 CHNGGKCVEK---HNGYSCDCTNSPFEGPFCQ 982
>sp|Q0V8T8|CTP5B_MOUSE Contactin-associated protein like 5-2 OS=Mus musculus GN=Cntnap5b
PE=2 SV=1
Length = 1292
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 47 QNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
++ C N C HGG CTQT+ T + C CS TGY G C
Sbjct: 547 KDRCFPNYCEHGGHCTQTW---TNFYCNCSNTGYTGATCH 583
>sp|Q0V8T9|CTP5A_MOUSE Contactin-associated protein like 5-1 OS=Mus musculus GN=Cntnap5a
PE=2 SV=1
Length = 1304
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 47 QNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
++ C N C HGG C QT+ T + C CSGTGY G C
Sbjct: 547 KDRCLPNYCEHGGHCDQTW---TTFYCNCSGTGYTGATCH 583
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 55 CYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C++GG+C + TGY C C+ + Y G C+
Sbjct: 967 CHNGGKCVEK---HTGYSCDCTNSPYEGPFCR 995
>sp|P35355|PGH2_RAT Prostaglandin G/H synthase 2 OS=Rattus norvegicus GN=Ptgs2 PE=1
SV=1
Length = 604
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C +NPC + G C D+ YKC C+ TG+YG+ C
Sbjct: 19 NPCCSNPCQNRGECMSIGFDQ--YKCDCTRTGFYGENC 54
>sp|Q0V8T7|CTP5C_MOUSE Contactin-associated protein like 5-3 OS=Mus musculus GN=Cntnap5c
PE=2 SV=1
Length = 1305
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 47 QNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
++ C N C HGG+C QT+ T + C CS TGY G C
Sbjct: 547 KDRCLPNYCEHGGQCAQTW---TNFYCNCSDTGYTGATCH 583
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 55 CYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C +GG+C + GY C C+ + Y G CQ
Sbjct: 967 CQNGGKCVEK---HIGYSCDCTNSPYEGPFCQ 995
>sp|O15943|CADN_DROME Neural-cadherin OS=Drosophila melanogaster GN=CadN PE=1 SV=2
Length = 3097
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 46 RQNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ +C T PC++GGRC T R G C C GY G +CQ
Sbjct: 2342 KPESCRTTPCHNGGRCVDT---RFGPHCSCP-VGYTGPRCQ 2378
>sp|Q0V8T4|CTP5C_RAT Contactin-associated protein like 5-3 OS=Rattus norvegicus
GN=Cntnap5c PE=2 SV=1
Length = 1307
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 47 QNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
++ C N C HGG C QT+ T + C CS TGY G C
Sbjct: 548 KDRCLPNYCEHGGHCVQTW---TTFYCNCSNTGYTGATCH 584
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 53 NPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
N C++GG+C + Y C C+ + Y G CQ
Sbjct: 967 NNCHNGGKCVEK---HNSYSCDCTKSPYEGPFCQ 997
>sp|O62664|PGH1_BOVIN Prostaglandin G/H synthase 1 OS=Bos taurus GN=PTGS1 PE=2 SV=2
Length = 600
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C PC H G C + DR Y+C C+ TGYYG C
Sbjct: 34 NPCCYYPCQHQGICVRFGLDR--YQCDCTRTGYYGPNC 69
>sp|O19183|PGH2_HORSE Prostaglandin G/H synthase 2 OS=Equus caballus GN=PTGS2 PE=2 SV=1
Length = 604
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 44 GKRQNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
G N C +NPC + G C D+ Y+C C+ TG+YG+ C
Sbjct: 15 GHAANPCCSNPCQNRGVCMSVGFDQ--YQCDCTRTGFYGENC 54
>sp|P27607|PGH2_CHICK Prostaglandin G/H synthase 2 OS=Gallus gallus GN=PTGS2 PE=2 SV=1
Length = 603
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C + PC + G C T DR Y+C C+ TGYYG+ C
Sbjct: 19 NPCCSLPCQNRGVCMTTGFDR--YECDCTRTGYYGENC 54
>sp|Q0V8T6|CTP5A_RAT Contactin-associated protein like 5-1 OS=Rattus norvegicus
GN=Cntnap5a PE=2 SV=1
Length = 1305
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 47 QNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
++ C N C HGG C QT+ T + C CS TGY G C
Sbjct: 547 KDRCLPNYCEHGGHCAQTW---TTFYCNCSDTGYTGATCH 583
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 55 CYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C++GG+C + ++GY C C+ + G CQ
Sbjct: 967 CHNGGKCVEK---QSGYSCDCTNSPNEGPFCQ 995
>sp|O02768|PGH2_RABIT Prostaglandin G/H synthase 2 OS=Oryctolagus cuniculus GN=PTGS2
PE=2 SV=1
Length = 604
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C +NPC + G C D+ YKC C+ TG+YG+ C
Sbjct: 19 NPCCSNPCQNRGVCMTMGFDQ--YKCDCTRTGFYGENC 54
>sp|O35161|CELR1_MOUSE Cadherin EGF LAG seven-pass G-type receptor 1 OS=Mus musculus
GN=Celsr1 PE=2 SV=3
Length = 3034
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 19/87 (21%)
Query: 1 SSACDP-AHVRPGCRIQDNQCICGKGCYPEYKFITQEECMTALKGKRQNACDTNPCYHGG 59
SS C P +H R CIC +G + ++C+ +AC NPC H
Sbjct: 1893 SSPCPPHSHCRD--TWDSYSCICDRGYF-------GKKCV--------DACLLNPCKHVA 1935
Query: 60 RCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C ++ GY C C G G+YG+ C+
Sbjct: 1936 ACVRSPNTPRGYSCEC-GPGHYGQYCE 1961
>sp|Q14517|FAT1_HUMAN Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 SV=2
Length = 4588
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 14/88 (15%)
Query: 9 VRPGCRIQ------DNQCICGKGCYPEYKFITQEECMTALKGKR----QNACDTNPCYHG 58
V PGC + N C G C P +C G N C + PC +G
Sbjct: 4005 VSPGCFLTATEDCASNPCQNGGVCNPSPAGGYYCKCSALYIGTHCEISVNPCSSKPCLYG 4064
Query: 59 GRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
G C D G+ C+C G Y G++CQ
Sbjct: 4065 GTCV---VDNGGFVCQCRGL-YTGQRCQ 4088
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 8 HVRPGCRIQDNQCICGKGCYPEYKFITQEECMTALKGKRQNA----CDTNPCYHGGRCTQ 63
+ P C+ D C G C+ + C + +G+R + C NPC HG C
Sbjct: 4088 QLSPYCK--DEPCKNGGTCFDSLDGAVCQ-CDSGFRGERCQSDIDECSGNPCLHGALCEN 4144
Query: 64 TFQDRTGYKCRCSGTGYYGKKCQ 86
T Y C CS Y G+ C+
Sbjct: 4145 T---HGSYHCNCSHE-YRGRHCE 4163
>sp|A1XQX0|NR1AA_DANRE Neurexin-1a OS=Danio rerio GN=nrxn1a PE=2 SV=1
Length = 1491
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C +NPC + G C + + Y C CSGTGY G+ C+
Sbjct: 669 CLSNPCLNSGTCREGWNR---YVCDCSGTGYLGRSCE 702
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
C + C + G C Q ++ G+ C CS T Y G C
Sbjct: 1076 CQEDSCSNQGVCLQQWE---GFSCDCSMTSYGGPLC 1108
>sp|O62725|PGH2_MUSVI Prostaglandin G/H synthase 2 OS=Mustela vison GN=PTGS2 PE=2 SV=1
Length = 604
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C +NPC + G C D+ Y C CS TG+YG+ C
Sbjct: 19 NPCCSNPCQNQGVCMSIGFDQ--YMCDCSRTGFYGENC 54
>sp|Q0V8T0|CNTP5_CANFA Contactin-associated protein-like 5 OS=Canis familiaris GN=CNTNAP5
PE=2 SV=1
Length = 1305
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 47 QNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
++ C N C HGG C+Q++ T + C CS TGY G C
Sbjct: 547 KDRCLPNYCEHGGFCSQSW---TTFYCNCSNTGYTGATCH 583
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 55 CYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C++GG+C + + +GY C C+ + Y G C+
Sbjct: 967 CHNGGKCVEKY---SGYFCDCTNSPYEGPFCK 995
>sp|O62698|PGH2_BOVIN Prostaglandin G/H synthase 2 OS=Bos taurus GN=PTGS2 PE=2 SV=2
Length = 604
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C ++PC + G C D+ YKC C+ TG+YG+ C
Sbjct: 19 NPCCSHPCQNRGVCMSVGFDQ--YKCDCTRTGFYGENC 54
>sp|Q0V8T3|CTP5D_RAT Contactin-associated protein like 5-4 OS=Rattus norvegicus
GN=Cntnap5d PE=2 SV=1
Length = 1305
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 47 QNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
++ C N C HGG C Q + T + C CS TGY G C
Sbjct: 547 KDRCLPNYCEHGGHCAQNW---TTFYCNCSDTGYTGATCH 583
>sp|P79208|PGH2_SHEEP Prostaglandin G/H synthase 2 OS=Ovis aries GN=PTGS2 PE=1 SV=1
Length = 603
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C ++PC + G C D+ YKC C+ TG+YG+ C
Sbjct: 18 NPCCSHPCQNRGVCMSVGFDQ--YKCDCTRTGFYGENC 53
>sp|P35354|PGH2_HUMAN Prostaglandin G/H synthase 2 OS=Homo sapiens GN=PTGS2 PE=1 SV=2
Length = 604
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C ++PC + G C D+ YKC C+ TG+YG+ C
Sbjct: 19 NPCCSHPCQNRGVCMSVGFDQ--YKCDCTRTGFYGENC 54
>sp|Q99P47|CNTP4_MOUSE Contactin-associated protein-like 4 OS=Mus musculus GN=Cntnap4 PE=2
SV=2
Length = 1310
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C N C HGG C+Q++ + + C C+ TGY G C
Sbjct: 555 CLPNSCEHGGECSQSW---STFHCNCTNTGYTGATCH 588
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 55 CYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
C HGG+C + +G+ C CS + Y G C
Sbjct: 971 CRHGGKCREK---PSGFFCDCSSSAYAGPFC 998
>sp|O97554|PGH1_RABIT Prostaglandin G/H synthase 1 OS=Oryctolagus cuniculus GN=PTGS1
PE=2 SV=1
Length = 606
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C PC H G C + DR Y+C C+ TGY G C
Sbjct: 40 NPCCYFPCQHQGVCVRVALDR--YQCDCTRTGYSGPNC 75
>sp|Q63372|NRX1A_RAT Neurexin-1 OS=Rattus norvegicus GN=Nrxn1 PE=1 SV=3
Length = 1530
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C +NPC + G C + Y C CSGTGY G+ C+
Sbjct: 703 CLSNPCKNNGMCRDGWNR---YVCDCSGTGYLGRSCE 736
>sp|Q62059|CSPG2_MOUSE Versican core protein OS=Mus musculus GN=Vcan PE=1 SV=2
Length = 3357
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C TNPC +GG C T T Y C C+ GY G +C+
Sbjct: 3055 CKTNPCLNGGTCYPT---ETSYVCTCA-PGYSGDQCE 3087
>sp|Q2PZL6|FAT4_MOUSE Protocadherin Fat 4 OS=Mus musculus GN=Fat4 PE=1 SV=2
Length = 4981
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 20/87 (22%)
Query: 4 CDPAHVRPGCRIQDN----QCICGKGCYPEYKFITQEECMTALKGKRQNACDTNPCYHGG 59
C P+ + G Q+ C+C G T + C +++ N C+ NPC++GG
Sbjct: 3906 CLPSPCKHGAVCQNFPGGFNCVCKTG-------YTGKMCESSV-----NYCECNPCFNGG 3953
Query: 60 RCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C + Y C C G +GK C+
Sbjct: 3954 SCQSGVES---YYCHCP-FGVFGKHCE 3976
Score = 35.8 bits (81), Expect = 0.073, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
N C +PC HG C Q F G+ C C TGY GK C+
Sbjct: 3904 NECLPSPCKHGAVC-QNFPG--GFNCVCK-TGYTGKMCE 3938
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 16/72 (22%)
Query: 15 IQDNQCICGKGCYPEYKFITQEECMTALKGKRQNACDTNPCYHGGRCTQTFQDRTGYKCR 74
+Q +QC C G + + +EC+ A PC++GG C G+ C
Sbjct: 3845 LQPSQCKCVPGYAGSWCEVDIDECLPA------------PCHNGGTCHNLV---GGFSCS 3889
Query: 75 CSGTGYYGKKCQ 86
C G+ G+ C+
Sbjct: 3890 CP-EGFTGRACE 3900
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 2 SACDPAHVRPGCRIQDNQCICGKG-CYPEYKFITQEECMTALKGKRQNACDTNPCYHGGR 60
S DP+ V+ GCR + IC C+ + I Q A K C ++PC +GG
Sbjct: 4389 SKTDPS-VKIGCRGPN---ICASNPCWGDLLCINQ---WYAYKCVPPGDCASHPCQNGGS 4441
Query: 61 CTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C +GY C C + + G+ C+
Sbjct: 4442 CEPGL--LSGYTCSCPES-HTGRTCE 4464
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 47 QNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ C NPC HGG C + + +C+C G GK C+
Sbjct: 4165 EGTCARNPCQHGGTCVDFW---SWQQCQCM-EGLTGKYCE 4200
>sp|Q28146|NRX1A_BOVIN Neurexin-1 OS=Bos taurus GN=NRXN1 PE=1 SV=1
Length = 1530
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C +NPC + G C + Y C CSGTGY G+ C+
Sbjct: 703 CLSNPCKNNGMCRDGWNR---YVCDCSGTGYLGRSCE 736
>sp|O88278|CELR3_RAT Cadherin EGF LAG seven-pass G-type receptor 3 OS=Rattus norvegicus
GN=Celsr3 PE=2 SV=1
Length = 3313
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 6 PAH---VRPGCRIQDNQCICGKGCYPEY--KFITQEECMTALKGKRQ----NACDTNPCY 56
P+H V PGC + N C G C P K + Q T G +AC NPC
Sbjct: 1925 PSHRINVEPGCTVT-NPCASGP-CPPHANCKDLWQTFSCTCWPGYYGPGCVDACLLNPCQ 1982
Query: 57 HGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ G C GY C C+ +GY+G+ C+
Sbjct: 1983 NQGSCRHLQGGPHGYTCDCA-SGYFGQHCE 2011
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 46 RQNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ + C + PC +GG C++ + G+ C C G+ GK C+
Sbjct: 1713 KSHFCASGPCKNGGLCSERW---GGFSCDCP-VGFGGKDCR 1749
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 16/77 (20%)
Query: 10 RPGCRIQDNQCICGKGCYPEYKFITQEECMTALKGKRQNACDTNPCYHGGRCTQTFQDRT 69
RP I +C C G T + C T L + C +NPC +GG C +
Sbjct: 1402 RPIQPIAGLRCRCPPG-------FTGDFCETEL-----DLCYSNPCRNGGACARR---EG 1446
Query: 70 GYKCRCSGTGYYGKKCQ 86
GY C C + G+ C+
Sbjct: 1447 GYTCVCRPR-FTGEDCE 1462
>sp|Q9ERB4|CSPG2_RAT Versican core protein (Fragments) OS=Rattus norvegicus GN=Vcan PE=2
SV=2
Length = 2738
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C TNPC +GG C T T Y C C+ GY G +C+
Sbjct: 2435 CKTNPCLNGGTCYPT---ETSYVCTCA-PGYSGDQCE 2467
>sp|Q9C0A0|CNTP4_HUMAN Contactin-associated protein-like 4 OS=Homo sapiens GN=CNTNAP4 PE=1
SV=3
Length = 1308
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C N C HGG C+Q++ + + C C+ TGY G C
Sbjct: 553 CLPNYCEHGGECSQSW---STFHCNCTNTGYRGATCH 586
>sp|Q6V0I7|FAT4_HUMAN Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2
Length = 4981
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 38 CMTALKGK----RQNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C T GK N C+ NPC++GG C Q+ D Y C C G +GK C+
Sbjct: 3926 CKTGYTGKMCESSVNYCECNPCFNGGSC-QSGVD--SYYCHCP-FGVFGKHCE 3974
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 47 QNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ AC +PC HGG C + + +C C G GK C+
Sbjct: 4163 EGACTRSPCQHGGTCMDYW---SWQQCHCK-EGLTGKYCE 4198
>sp|P05979|PGH1_SHEEP Prostaglandin G/H synthase 1 OS=Ovis aries GN=PTGS1 PE=1 SV=2
Length = 600
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C PC H G C + DR Y+C C+ TGY G C
Sbjct: 34 NPCCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 69
>sp|Q91ZI0|CELR3_MOUSE Cadherin EGF LAG seven-pass G-type receptor 3 OS=Mus musculus
GN=Celsr3 PE=2 SV=2
Length = 3301
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 1 SSACDPAH---VRPGCRIQDNQCICGKGCYP--EYKFITQEECMTALKGKRQ----NACD 51
S+ P+H V PGC + N C G C P + K + Q T G +AC
Sbjct: 1918 SALLPPSHRVNVEPGCTVT-NPCASGP-CPPHADCKDLWQTFSCTCRPGYYGPGCVDACL 1975
Query: 52 TNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
NPC + G C GY C C +GY+G+ C+
Sbjct: 1976 LNPCQNQGSCRHLQGAPHGYTCDCV-SGYFGQHCE 2009
>sp|Q8WYK1|CNTP5_HUMAN Contactin-associated protein-like 5 OS=Homo sapiens GN=CNTNAP5 PE=2
SV=1
Length = 1306
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 47 QNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
++ C N C HGG C+Q++ T + C CS T Y G C
Sbjct: 547 KDRCLPNYCEHGGSCSQSW---TTFYCNCSDTSYTGATCH 583
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 55 CYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C++GG+C + GY C C+ + Y G C+
Sbjct: 967 CHNGGKCVEK---HNGYLCDCTNSPYEGPFCK 995
>sp|P23219|PGH1_HUMAN Prostaglandin G/H synthase 1 OS=Homo sapiens GN=PTGS1 PE=1 SV=2
Length = 599
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
N C PC H G C + DR Y+C C+ TGY G C
Sbjct: 33 NPCCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNC 68
>sp|P78357|CNTP1_HUMAN Contactin-associated protein 1 OS=Homo sapiens GN=CNTNAP1 PE=1 SV=1
Length = 1384
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C N C H GRC Q++ D + C C TGY G+ C
Sbjct: 544 CSPNMCEHDGRCYQSWDD---FICYCELTGYKGETCH 577
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 54 PCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
PC+HGGRC + + + Y C C T + G C
Sbjct: 967 PCFHGGRCVERY---SYYTCDCDLTAFDGPYC 995
>sp|Q8NFT8|DNER_HUMAN Delta and Notch-like epidermal growth factor-related receptor
OS=Homo sapiens GN=DNER PE=1 SV=1
Length = 737
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 16/67 (23%)
Query: 20 CICGKGCYPEYKFITQEECMTALKGKRQNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTG 79
CIC G T EEC + N CD+NPC+HGG C GY C C G
Sbjct: 567 CICAPG-------FTGEECDIDI-----NECDSNPCHHGGSC---LDQPNGYNCHCP-HG 610
Query: 80 YYGKKCQ 86
+ G C+
Sbjct: 611 WVGANCE 617
>sp|Q0V8S9|CNTP5_CHICK Contactin-associated protein-like 5 OS=Gallus gallus GN=CNTNAP5
PE=2 SV=1
Length = 1305
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 47 QNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
++ C N C HGG+C+Q++ T + C C+ T Y G C
Sbjct: 547 KDRCLPNYCEHGGKCSQSW---TTFYCDCNDTSYMGATCH 583
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 53 NPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
N C++GG+C + + GY C C+ + Y G C+
Sbjct: 965 NLCHNGGKCVEKYN---GYSCDCTSSAYEGPFCK 995
>sp|Q9HCU4|CELR2_HUMAN Cadherin EGF LAG seven-pass G-type receptor 2 OS=Homo sapiens
GN=CELSR2 PE=1 SV=1
Length = 2923
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Query: 2 SACDPAH-----VRPGCRIQD----NQCICGKGCYPEYKFITQEECMTALKGKR-QNACD 51
++ DP+H V GC + D N C C ++ + C G N CD
Sbjct: 1775 NSLDPSHGESINVEQGCSLPDPCDSNPCPANSYCSNDWDSYSCS-CDPGYYGDNCTNVCD 1833
Query: 52 TNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
NPC H CT+ GY C C Y G C+
Sbjct: 1834 LNPCEHQSVCTRKPSAPHGYTCECP-PNYLGPYCE 1867
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 46 RQNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
++N CD+N C++GG C + + C C G+ GK C
Sbjct: 1574 KKNVCDSNTCHNGGTCVNQWD---AFSCECP-LGFGGKSC 1609
>sp|A1XQY1|NR3BA_DANRE Neurexin-3b OS=Danio rerio GN=nrxn3b PE=2 SV=1
Length = 1686
Score = 37.4 bits (85), Expect = 0.031, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
C NPC +GG C+ D Y C CS TGY G+ C
Sbjct: 198 CTENPCENGGSCSMA--DGEAY-CDCSKTGYTGRYC 230
Score = 35.8 bits (81), Expect = 0.077, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
CD+N C + G C + + + C C+GTGY+ + C+
Sbjct: 658 CDSNSCKNNGICKEGWNR---FICDCTGTGYWDRTCE 691
>sp|Q8VHS2|CRUM1_MOUSE Protein crumbs homolog 1 OS=Mus musculus GN=Crb1 PE=1 SV=3
Length = 1405
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
N C++ PC HGG C R Y C C+G+G+ G C+
Sbjct: 263 NECESQPCLHGGLCV---DGRNSYHCDCTGSGFTGMHCE 298
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 29 EYKFITQEECMTALKGKRQNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
E +F+ M NAC ++PC HGG C ++ + Y+C C +G+ G C+
Sbjct: 1121 EEQFLKVSTNMVLTGCLPSNACHSSPCLHGGNCEDSY---SSYRCACL-SGWSGTHCE 1174
>sp|Q9R0M0|CELR2_MOUSE Cadherin EGF LAG seven-pass G-type receptor 2 OS=Mus musculus
GN=Celsr2 PE=1 SV=2
Length = 2920
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 8 HVRPGCRIQDNQCICGKGCYPEYKFITQE------ECMTALKGKR-QNACDTNPCYHGGR 60
+V PGC + D C P + + + C+ G N CD NPC H
Sbjct: 1787 NVEPGCSLPDP---CDSNPCPTNSYYSNDWNSYSCSCVLGYYGDNCTNVCDLNPCEHQSV 1843
Query: 61 CTQTFQDRTGYKCRCSGTGYYGKKCQ 86
CT+ GY C C Y G C+
Sbjct: 1844 CTRKPNTPHGYICECL-PNYLGPYCE 1868
>sp|Q9NYQ6|CELR1_HUMAN Cadherin EGF LAG seven-pass G-type receptor 1 OS=Homo sapiens
GN=CELSR1 PE=1 SV=1
Length = 3014
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 17/86 (19%)
Query: 1 SSACDPAHVRPGCRIQDNQCICGKGCYPEYKFITQEECMTALKGKRQNACDTNPCYHGGR 60
SS C P + R +D C+C KG Y I C+ +AC NPC + G
Sbjct: 1878 SSPC-PPNSRCHDAWEDYSCVCDKG----YLGIN---CV--------DACHLNPCENMGA 1921
Query: 61 CTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C ++ GY C C G +YG C+
Sbjct: 1922 CVRSPGSPQGYVCEC-GPSHYGPYCE 1946
>sp|P46531|NOTC1_HUMAN Neurogenic locus notch homolog protein 1 OS=Homo sapiens GN=NOTCH1
PE=1 SV=4
Length = 2555
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 38 CMTALKGKRQNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C+T L NAC TNPC +GG C T YKCRC G+ GK CQ
Sbjct: 98 CLTPLD----NACLTNPCRNGGTC--DLLTLTEYKCRCP-PGWSGKSCQ 139
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTG-YKCRCSGTGYYGKKCQ 86
N CD+ PC HGG C QD G Y+C C GY G CQ
Sbjct: 1023 NECDSQPCLHGGTC----QDGCGSYRCTCP-QGYTGPNCQ 1057
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
CD++PC +GG+C QT T Y+C C +G+ G C
Sbjct: 1063 CDSSPCKNGGKCWQT---HTQYRCECP-SGWTGLYCD 1095
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 46 RQNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
N C++NPC +GG C +GY C C G+ G CQ
Sbjct: 753 NNNECESNPCVNGGTCKDM---TSGYVCTCR-EGFSGPNCQ 789
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
N C +PC HG C T GY+C C GY G+ C+
Sbjct: 871 NECVLSPCRHGASCQNT---HGGYRCHCQA-GYSGRNCE 905
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 14 RIQDNQCICGKGCYPEYKFITQEECMTALKGKRQNACDTNPCYHGGRCTQTFQDRTGYKC 73
+I + QCIC P Y+ + E + C ++PC H GRC + ++C
Sbjct: 470 QIGEFQCIC----MPGYEGVHCE--------VNTDECASSPCLHNGRCLDKINE---FQC 514
Query: 74 RCSGTGYYGKKCQ 86
C TG+ G CQ
Sbjct: 515 ECP-TGFTGHLCQ 526
>sp|O54991|CNTP1_MOUSE Contactin-associated protein 1 OS=Mus musculus GN=Cntnap1 PE=1 SV=2
Length = 1385
Score = 36.6 bits (83), Expect = 0.046, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C N C H GRC Q++ D + C C TGY G C
Sbjct: 545 CSPNMCEHDGRCYQSWDD---FICYCELTGYKGVTCH 578
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 54 PCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
PC+HGGRC + + + Y C C T + G C
Sbjct: 968 PCFHGGRCVERY---SYYTCDCDLTAFDGPYC 996
>sp|P97846|CNTP1_RAT Contactin-associated protein 1 OS=Rattus norvegicus GN=Cntnap1 PE=1
SV=1
Length = 1381
Score = 36.6 bits (83), Expect = 0.049, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C N C H GRC Q++ D + C C TGY G C
Sbjct: 545 CSPNMCEHDGRCYQSWDD---FICYCELTGYKGVTCH 578
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 54 PCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
PC+HGGRC + + + Y C C T + G C
Sbjct: 968 PCFHGGRCVERY---SYYTCDCDLTAFDGPYC 996
>sp|D0PRN3|NRX3A_CHICK Neurexin-3 OS=Gallus gallus PE=1 SV=1
Length = 1693
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 6 PAHVRPGCRIQDNQCICG--KGCYPEYKFITQEECMTALKGKR---QNACDTNPCYHGGR 60
P+++RP D +G K+ E + +G R + C NPC +GG
Sbjct: 153 PSYIRPAALTLDGVLSEPPFQGFILNLKYGNSEPQLLGSQGVRLEMEGLCTENPCENGGT 212
Query: 61 CTQTFQDRTGYKCRCSGTGYYGKKC 85
C F +C CS TGY GK C
Sbjct: 213 C---FLLDGEPRCDCSATGYTGKLC 234
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
CD+ PC + C + + C C+GTGY+G+ C+
Sbjct: 666 CDSYPCKNNAVCKDGWNR---FICDCTGTGYWGRTCE 699
Score = 32.3 bits (72), Expect = 0.93, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKC 85
C + C + G C Q ++ G+ C CS T Y G +C
Sbjct: 1072 CQEDSCANQGICNQQWE---GFTCDCSMTSYSGSQC 1104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.494
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,274,630
Number of Sequences: 539616
Number of extensions: 1264929
Number of successful extensions: 3914
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 245
Number of HSP's that attempted gapping in prelim test: 2923
Number of HSP's gapped (non-prelim): 1094
length of query: 86
length of database: 191,569,459
effective HSP length: 56
effective length of query: 30
effective length of database: 161,350,963
effective search space: 4840528890
effective search space used: 4840528890
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)