RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy6902
         (86 letters)



>gnl|CDD|178716 PLN03172, PLN03172, chalcone synthase family protein;
          Provisional.
          Length = 393

 Score = 28.9 bits (64), Expect = 0.27
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 27 YPEYKF-ITQEECMTALKGKRQNACD 51
          YP+Y F IT  E MT LK K +  CD
Sbjct: 36 YPDYYFRITNSEHMTELKEKFKRMCD 61


>gnl|CDD|178714 PLN03170, PLN03170, chalcone synthase; Provisional.
          Length = 401

 Score = 28.9 bits (64), Expect = 0.29
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 27 YPEYKF-ITQEECMTALKGKRQNACD 51
          YP+Y F IT+ E MT LK K +  CD
Sbjct: 40 YPDYYFRITKSEHMTELKEKFKRMCD 65


>gnl|CDD|201072 pfam00195, Chal_sti_synt_N, Chalcone and stilbene synthases,
          N-terminal domain.  The C-terminal domain of Chalcone
          synthase is reported to be structurally similar to
          domains in thiolase and beta-ketoacyl synthase. The
          differences in activity are accounted for by
          differences in this N-terminal domain.
          Length = 227

 Score = 27.3 bits (61), Expect = 0.74
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 27 YPEYKF-ITQEECMTALKGKRQNACDT 52
          YP+Y F +T+ E +T LK K Q  C+ 
Sbjct: 35 YPDYYFRVTKSEHLTDLKEKFQRICEK 61


>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a
          large number of membrane-bound and extracellular
          (mostly animal) proteins. Many of these proteins
          require calcium for their biological function and
          calcium-binding sites have been found to be located at
          the N-terminus of particular EGF-like domains;
          calcium-binding may be crucial for numerous
          protein-protein interactions. Six conserved core
          cysteines form three disulfide bridges as in non
          calcium-binding EGF domains, whose structures are very
          similar. EGF_CA can be found in tandem repeat
          arrangements.
          Length = 38

 Score = 25.3 bits (56), Expect = 1.2
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)

Query: 53 NPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
          NPC +GG C  T      Y+C C   GY G+ C+
Sbjct: 9  NPCQNGGTCVNT---VGSYRCSCP-PGYTGRNCE 38


>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH)
          domain of a group of proteins with similarity to
          glucose-1-phosphate adenylyltransferase: Included in
          this family are glucose-1-phosphate
          adenylyltransferase, mannose-1-phosphate
          guanylyltransferase, and the eukaryotic translation
          initiation factor eIF-2B subunits, epsilon and gamma.
          Most members of this family contains an N-terminal
          catalytic domain that resembles a dinucleotide-binding
          Rossmann fold, followed by a LbH fold domain with at
          least 4 turns, each containing three imperfect tandem
          repeats of a hexapeptide repeat motif
          (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an
          additional domain of unknown function at the
          C-terminus. Proteins containing hexapeptide repeats are
          often enzymes showing acyltransferase activity.
          Length = 79

 Score = 25.3 bits (56), Expect = 2.5
 Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 1/23 (4%)

Query: 4  CDPAHVRPGCRIQDNQCICGKGC 26
           D A +    R+  N CI G   
Sbjct: 54 GDNAVIGENVRV-VNLCIIGDDV 75


>gnl|CDD|215424 PLN02790, PLN02790, transketolase.
          Length = 654

 Score = 25.4 bits (56), Expect = 4.5
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 4/34 (11%)

Query: 10  RPGCRIQDNQ--CICGKGCYPEYKFITQEECMTA 41
           +P  +I D+   CI G GC  E   I+ E    A
Sbjct: 130 KPDHKIVDHYTYCILGDGCQMEG--ISNEAASLA 161


>gnl|CDD|225373 COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger,
           probably nucleic-acid-binding [DNA replication,
           recombination, and repair].
          Length = 279

 Score = 25.0 bits (55), Expect = 4.9
 Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)

Query: 59  GRC-TQTFQDRTGYKCRCSGTGYY 81
           GRC T+T+    G+   C   G+ 
Sbjct: 115 GRCGTKTYPREGGWARVCPKCGHE 138


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.139    0.494 

Gapped
Lambda     K      H
   0.267   0.0762    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,872,824
Number of extensions: 261406
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 14
Length of query: 86
Length of database: 10,937,602
Length adjustment: 54
Effective length of query: 32
Effective length of database: 8,542,486
Effective search space: 273359552
Effective search space used: 273359552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.1 bits)