RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6902
(86 letters)
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 46.2 bits (109), Expect = 1e-07
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C + C + G C Q + G+ C CS T + G C
Sbjct: 186 TTCQEDSCSNQGVCLQQW---DGFSCDCSMTSFSGPLCN 221
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM;
2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 45.8 bits (108), Expect = 2e-07
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
N C PC H G C + DR Y+C C+ TGY G C
Sbjct: 3 NPCCYYPCQHQGICVRFGLDR--YQCDCTRTGYSGPNCT 39
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS
HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 45.5 bits (107), Expect = 2e-07
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
N C +NPC + G C T D+ YKC C+ TG+YG+ C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQ--YKCDCTRTGFYGENCT 38
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 43.7 bits (102), Expect = 9e-07
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 11/70 (15%)
Query: 17 DNQCICGKGCYPEYKFITQEECMTALKGKRQNACDTNPCYHGGRCTQTFQDRTGYKCRCS 76
D+ + P + E + C +GG C+ C CS
Sbjct: 168 DSGEVKLDDEPPNSGGGSPCEAG--------EEGEGGVCLNGGVCSVVD---DQAVCDCS 216
Query: 77 GTGYYGKKCQ 86
TG+ GK C
Sbjct: 217 RTGFRGKDCS 226
Score = 42.1 bits (98), Expect = 4e-06
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C + C + G C Q + G+ C CS T + G C
Sbjct: 1018 TTCQEDSCSNQGVCLQQW---DGFSCDCSMTSFSGPLCN 1053
Score = 38.3 bits (88), Expect = 8e-05
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C +NPC + G C + Y C CSGTGY G+ C+
Sbjct: 620 KPCLSNPCKNNGMCRDGW---NRYVCDCSGTGYLGRSCE 655
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 33.9 bits (78), Expect = 0.002
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ C + PC H G C + GY C CS GY G C+
Sbjct: 6 SPCISQPCLHNGSCQDSIW---GYTCTCS-PGYEGSNCE 40
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular
MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 31.2 bits (71), Expect = 0.015
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 37 ECMTALKGKRQNACDTNPCYHGGRCTQTFQDRT----GYKCRCSGTGYYGKKCQ 86
+ C NPC++GG C + R GY C+C G+ G CQ
Sbjct: 42 VASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCP-RGFNGIHCQ 94
Score = 30.8 bits (70), Expect = 0.021
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
CD NPC +GG C D + C C G+ C
Sbjct: 3 CDPNPCENGGICLPGLADG-SFSCECP-DGFTDPNCS 37
Score = 27.8 bits (62), Expect = 0.29
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
N C+ PC +GG CT Y C C + G+ CQ
Sbjct: 98 NECEVEPCKNGGICTDLVA---NYSCECP-GEFMGRNCQ 132
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 29.4 bits (67), Expect = 0.018
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ C++NPC +GG C Y+C C G+ GK C+
Sbjct: 4 DQCESNPCLNGGSCKDDIN---SYECWCP-FGFEGKNCE 38
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 30.4 bits (69), Expect = 0.053
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Query: 11 PGCRIQDNQCICGKGCYPEYKF-ITQEECMTALKGKRQNACD 51
C Q + Y +Y F +T+ E MTALK K CD
Sbjct: 615 DHCVYQSD--------YADYYFKVTKSEHMTALKKKFNRICD 648
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 29.5 bits (67), Expect = 0.061
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
N C +NPC + C ++C C GY G C+
Sbjct: 46 NECVSNPCQNDATCLDQI---GEFQCICM-PGYEGVHCE 80
Score = 29.5 bits (67), Expect = 0.070
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ C ++PC H GRC ++C C TG+ G CQ
Sbjct: 84 DECASSPCLHNGRCLDKI---NEFQCECP-TGFTGHLCQ 118
Score = 28.3 bits (64), Expect = 0.16
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 49 ACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ NPC H G+C T ++C+C GY G +C+
Sbjct: 9 SLGANPCEHAGKCINTL---GSFECQCL-QGYTGPRCE 42
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 28.2 bits (63), Expect = 0.13
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+C C++GG C Q + + C+C G+ GK C+
Sbjct: 49 KSCSEPRCFNGGTCQQA-LYFSDFVCQCP-EGFAGKSCE 85
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 28.6 bits (64), Expect = 0.19
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 49 ACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+C C G C + + Y C C GYYG +CQ
Sbjct: 121 SCQPWSCSGHGECVEIINN---YTCNC-DVGYYGPQCQ 154
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 28.1 bits (63), Expect = 0.24
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ C ++PC +GG C Q Y C C + G+ C+
Sbjct: 48 DQCASSPCQNGGSCKDQLQ---SYICFCL-PAFEGRNCE 82
Score = 24.2 bits (53), Expect = 6.0
Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTG--YKCRCSGTGYYGKKCQ 86
+ +GG C Q D TG CRC GY
Sbjct: 86 DDQLICVNENGG-CEQYCSDHTGTKRSCRCH-EGYSLLADG 124
>2vh0_B Activated factor XA light chain; serine protease, EGF-like
domain, blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 28.0 bits (63), Expect = 0.25
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ C+T+PC + G+C Y C C G+ GK C+
Sbjct: 43 DQCETSPCQNQGKCKDGLG---EYTCTCL-EGFEGKNCE 77
Score = 23.8 bits (52), Expect = 8.4
Identities = 6/37 (16%), Positives = 10/37 (27%), Gaps = 4/37 (10%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C + C + + C C+ GY
Sbjct: 84 CSLDNGDCDQFCHEE---QNSVVCSCA-RGYTLADNG 116
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 27.7 bits (62), Expect = 0.29
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ C+ NPC +GG C Y+C C G+ GK C+
Sbjct: 49 DQCEPNPCLNGGLCKDDIN---SYECWCQ-VGFEGKNCE 83
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 27.8 bits (62), Expect = 0.33
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 49 ACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
AC C G C +T Y C+C G+ G KC+
Sbjct: 121 ACTNTSCSGHGECVETI---NNYTCKCD-PGFSGLKCE 154
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 26.3 bits (58), Expect = 0.48
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ C +GG C + Y C C GY G +CQ
Sbjct: 7 PSSYDGYCLNGGVC-MHIESLDSYTCNCV-IGYSGDRCQ 43
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 27.2 bits (60), Expect = 0.58
Identities = 5/20 (25%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 27 YPEYKFITQEECM-TALKGK 45
YPE +F + + + + G+
Sbjct: 292 YPELEFTSIDGLLDLFISGR 311
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 26.6 bits (59), Expect = 0.87
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ C+T+PC + G+C Y C C G+ GK C+
Sbjct: 43 DQCETSPCQNQGKCKDGLG---EYTCTCL-EGFEGKNCE 77
Score = 24.3 bits (53), Expect = 5.0
Identities = 4/39 (10%), Positives = 7/39 (17%), Gaps = 3/39 (7%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
PC + R+ + S
Sbjct: 120 IPTGPYPCGKQTLER---RKRSVAQATSSSGEAPDSITW 155
>3top_A Maltase-glucoamylase, intestinal; membrane, hydrolase-hydrolase
inhibitor complex; HET: ACR; 2.88A {Homo sapiens} PDB:
3ton_A*
Length = 908
Score = 26.4 bits (58), Expect = 1.1
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 26 CYPEYKFITQEEC 38
CYP+ + E C
Sbjct: 15 CYPDENGASAENC 27
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 25.2 bits (55), Expect = 1.2
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 53 NPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C H G C + Y C C GY G++CQ
Sbjct: 12 GYCLHDGVC-MYIEALDKYACNCV-VGYIGERCQ 43
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 25.9 bits (57), Expect = 1.4
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 49 ACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+C C G C +T Y C C G+YG +C+
Sbjct: 121 SCQDMSCSKQGECLETI---GNYTCSC-YPGFYGPECE 154
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens}
PDB: 2rhp_A*
Length = 634
Score = 25.7 bits (56), Expect = 2.0
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYG 82
+ C +NPC+ G +C+ + C G+ G
Sbjct: 4 DGCLSNPCFPGAQCSSF--PDGSWSCGFCPVGFLG 36
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 24.3 bits (52), Expect = 3.0
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 48 NACDTNPCYHGGRCT--QTFQDRTGYKCRCSGTGYYGKKCQ 86
+ C +GG C + + + Y C+C G+ G +C
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQ-PGFTGARCT 46
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 24.1 bits (52), Expect = 3.1
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 51 DTNPCYHGGRC-TQTFQDRTGYKCRCSGTGYYGKKCQ 86
D C + C D Y C C+ G+ G++C+
Sbjct: 12 DAWYCLNDAHCFAVKIADLPVYSCECA-IGFMGQRCE 47
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 24.9 bits (54), Expect = 4.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 4 CDPAHVRPGCRIQDNQCICGKG 25
C+PA G ++ N+C+C KG
Sbjct: 426 CEPACRHGGVCVRPNKCLCKKG 447
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB:
1i6v_D* 2gho_D
Length = 1265
Score = 24.2 bits (53), Expect = 6.4
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 15 IQDNQCICGKGCYPEYKFITQEEC 38
I+D +C CGK ++ E C
Sbjct: 53 IKDYECACGKYKRQRFEGKVCERC 76
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA
polymerase, nucleotidyltransferase, transcription,
transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Length = 1407
Score = 24.2 bits (53), Expect = 7.0
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 15 IQDNQCICGKGCYPEYKFITQEEC 38
++D +C+CGK +++ + E+C
Sbjct: 65 VKDYECLCGKYKRLKHRGVICEKC 88
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 24.0 bits (52), Expect = 7.6
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 7/40 (17%)
Query: 47 QNACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C G C + KC+C G++G+ C
Sbjct: 275 SKPVCEPGCGAHGTCHE------PNKCQCQ-EGWHGRHCN 307
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain,
kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP:
g.3.11.1 g.14.1.1 PDB: 2i9b_A*
Length = 145
Score = 23.7 bits (50), Expect = 9.3
Identities = 6/34 (17%), Positives = 9/34 (26%)
Query: 43 KGKRQNACDTNPCYHGGRCTQTFQDRTGYKCRCS 76
+ C +GG C + C C
Sbjct: 3 SNELHQVPSNCDCLNGGTCVSNKYFSNIHWCNCP 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.494
Gapped
Lambda K H
0.267 0.0482 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,307,916
Number of extensions: 64407
Number of successful extensions: 359
Number of sequences better than 10.0: 1
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 154
Length of query: 86
Length of database: 6,701,793
Length adjustment: 54
Effective length of query: 32
Effective length of database: 5,194,059
Effective search space: 166209888
Effective search space used: 166209888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.0 bits)