RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6902
(86 letters)
>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
module {Sheep (Ovis aries) [TaxId: 9940]}
Length = 42
Score = 36.0 bits (83), Expect = 2e-05
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
N C PC H G C + D Y+C C+ TGY G C
Sbjct: 3 NPCCYYPCQHQGICVRFGLD--RYQCDCTRTGYSGPNCT 39
>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like
module {Mouse (Mus musculus) [TaxId: 10090]}
Length = 41
Score = 35.9 bits (83), Expect = 2e-05
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
N C +NPC + G C T D YKC C+ TG+YG+ C
Sbjct: 2 NPCCSNPCQNRGECMSTGFD--QYKCDCTRTGFYGENCT 38
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 30.0 bits (68), Expect = 0.004
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ C++NPC +GG C Y+C C G+ GK C+
Sbjct: 4 DQCESNPCLNGGSCKDDIN---SYECWCP-FGFEGKNCE 38
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 30.0 bits (68), Expect = 0.004
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
N C +NPC + C ++C C GY G C+
Sbjct: 2 NECVSNPCQNDATCLDQIG---EFQCICM-PGYEGVHCE 36
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 29.3 bits (66), Expect = 0.009
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ C+T+PC + G+C Y C C G+ GK C+
Sbjct: 1 DQCETSPCQNQGKCKDGLG---EYTCTCL-EGFEGKNCE 35
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 28.9 bits (65), Expect = 0.009
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ C ++PC +GG C Q Y C C + G+ C+
Sbjct: 3 DQCASSPCQNGGSCKDQLQ---SYICFCL-PAFEGRNCE 37
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 28.9 bits (65), Expect = 0.012
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ C ++PC H GRC ++C C TG+ G CQ
Sbjct: 1 DECASSPCLHNGRCLDKIN---EFQCECP-TGFTGHLCQ 35
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 28.6 bits (64), Expect = 0.016
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
AC C G C +T Y C+C G+ G KC+
Sbjct: 2 AACTNTSCSGHGECVETIN---NYTCKCD-PGFSGLKCE 36
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 28.2 bits (63), Expect = 0.019
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+C C G C +T Y C C G+YG +C+
Sbjct: 2 ASCQDMSCSKQGECLETI---GNYTCSCY-PGFYGPECE 36
>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type),
t-PA {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 27.1 bits (60), Expect = 0.050
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 50 CDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C C++GG C Q + + C+C G+ GK C+
Sbjct: 1 CSEPRCFNGGTCQQA-LYFSDFVCQCP-EGFAGKSCE 35
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 27.0 bits (60), Expect = 0.059
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 49 ACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ NPC H G+C T ++C+C GY G +C+
Sbjct: 7 SLGANPCEHAGKCINTLG---SFECQCL-QGYTGPRCE 40
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 27.2 bits (60), Expect = 0.080
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ C +GG C + Y C C GY G +CQ
Sbjct: 7 PSSYDGYCLNGGVCMHI-ESLDSYTCNCV-IGYSGDRCQ 43
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
sapiens) [TaxId: 9606]}
Length = 48
Score = 26.4 bits (58), Expect = 0.11
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
C H G C + Y C C GY G++CQ
Sbjct: 5 PLSHDGYCLHDGVCMYI-EALDKYACNCV-VGYIGERCQ 41
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 26.1 bits (57), Expect = 0.23
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 48 NACDTNPCYHGGRCTQTFQ--DRTGYKCRCSGTGYYGKKCQ 86
+ C +GG C + + Y C+C G+ G +C
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQ-PGFTGARCT 46
>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 46
Score = 25.5 bits (56), Expect = 0.25
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
++ C HG D + CRC GY G +C+
Sbjct: 7 SSDMNGYCLHGQCI--YLVDMSQNYCRCE-VGYTGVRCE 42
>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 49
Score = 24.0 bits (52), Expect = 1.2
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
T C+HG C C +GY G +C+
Sbjct: 8 PDSHTQFCFHGTCR--FLVQEDKPACVCH-SGYVGARCE 43
>d1t6ja_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Fungi
(Rhodosporidium toruloides) [TaxId: 5286]}
Length = 678
Score = 24.6 bits (53), Expect = 2.2
Identities = 3/16 (18%), Positives = 5/16 (31%)
Query: 21 ICGKGCYPEYKFITQE 36
Y F+ +E
Sbjct: 619 YLSPRTQILYAFVREE 634
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 22.9 bits (49), Expect = 2.6
Identities = 8/39 (20%), Positives = 11/39 (28%), Gaps = 3/39 (7%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ C G C C GY G +C+
Sbjct: 9 PKQYKHYCIKGRCR--FVVAEQTPSCVCD-EGYIGARCE 44
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 22.8 bits (49), Expect = 3.0
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 48 NACDTNPCYHGGRCTQTFQDRTGYKCRCSGTGYYGKKCQ 86
+ C + C HG + C C +G+ G+ CQ
Sbjct: 9 HPCASLCCGHGTCIDG----IGSFSCDCR-SGWEGRFCQ 42
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
thermophilus [TaxId: 274]}
Length = 1504
Score = 23.6 bits (50), Expect = 3.9
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 15 IQDNQCICGKGCYPE--YKFITQEEC 38
I+D +C CGK Y ++ E C
Sbjct: 52 IKDYECACGK--YKRQRFEGKVCERC 75
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.494
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 355,640
Number of extensions: 15657
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 51
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)