BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6903
         (249 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GW4|A Chain A, Crystal Structure Of Uncharacterized Protein From
           Deinococcus Radiodurans. Northeast Structural Genomics
           Consortium Target Drr162b.
 pdb|3GW4|B Chain B, Crystal Structure Of Uncharacterized Protein From
           Deinococcus Radiodurans. Northeast Structural Genomics
           Consortium Target Drr162b
          Length = 203

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 42  CASCYELIIVADNWGVYAYGVALYILTIWWSLNWDD--ASACPYTHLEDVAERRSNLLIA 99
            A+ YE+  VA ++G  A     Y  ++ ++   DD  A AC +  L D+A++  NLL A
Sbjct: 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA 166


>pdb|3S99|A Chain A, Crystal Structure Of A Basic Membrane Lipoprotein From
           Brucella Melitensis, Iodide Soak
          Length = 356

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 7/69 (10%)

Query: 43  ASCYELIIVADNWGVYAYGVALYIL-------TIWWSLNWDDASACPYTHLEDVAERRSN 95
           A   +L  V D WG Y    A  +L        IWW +        P+T++ D  ++ + 
Sbjct: 243 APDTQLTAVVDEWGPYYIDRAKAVLDGTWKSQNIWWGMKEGLVKMAPFTNMPDDVKKLAE 302

Query: 96  LLIALFKIG 104
              A  K G
Sbjct: 303 ETEARIKSG 311


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.140    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,136,233
Number of Sequences: 62578
Number of extensions: 272510
Number of successful extensions: 653
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 652
Number of HSP's gapped (non-prelim): 8
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)