Query psy6903
Match_columns 249
No_of_seqs 136 out of 1319
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 21:25:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0223|consensus 100.0 1E-43 2.2E-48 304.4 16.8 206 29-244 12-227 (238)
2 COG0580 GlpF Glycerol uptake f 100.0 7.4E-41 1.6E-45 286.0 22.2 214 29-243 6-240 (241)
3 PRK05420 aquaporin Z; Provisio 100.0 1.5E-40 3.2E-45 286.1 23.2 216 29-246 3-231 (231)
4 PLN00184 aquaporin NIP1; Provi 100.0 3.2E-40 7E-45 292.1 21.9 208 29-243 55-273 (296)
5 PF00230 MIP: Major intrinsic 100.0 3.5E-40 7.5E-45 283.4 19.8 200 29-238 9-227 (227)
6 PLN00026 aquaporin NIP; Provi 100.0 1.6E-38 3.6E-43 280.8 20.8 205 29-248 72-287 (298)
7 PTZ00016 aquaglyceroporin; Pro 100.0 3.3E-38 7.2E-43 279.8 22.7 214 29-244 51-291 (294)
8 KOG0224|consensus 100.0 1.7E-39 3.7E-44 280.8 13.8 212 29-241 33-273 (316)
9 PLN00027 aquaporin TIP; Provis 100.0 1.1E-37 2.4E-42 271.4 21.5 201 29-243 21-239 (252)
10 PLN00166 aquaporin TIP2; Provi 100.0 1.3E-37 2.9E-42 270.3 21.9 201 29-243 19-237 (250)
11 PLN00182 putative aquaporin NI 100.0 3.5E-37 7.6E-42 271.2 21.5 201 29-243 43-254 (283)
12 PLN00167 aquaporin TIP5; Provi 100.0 6.9E-37 1.5E-41 266.5 21.5 201 29-243 23-240 (256)
13 cd00333 MIP Major intrinsic pr 100.0 7.9E-37 1.7E-41 262.9 21.5 212 29-241 1-228 (228)
14 PLN00183 putative aquaporin NI 100.0 1.4E-34 3.1E-39 253.8 21.0 201 29-244 46-257 (274)
15 TIGR00861 MIP MIP family chann 100.0 1.9E-34 4.1E-39 246.2 18.6 198 33-238 1-216 (216)
16 PLN00184 aquaporin NIP1; Provi 99.4 1.8E-12 4E-17 115.2 8.8 104 139-244 45-156 (296)
17 PLN00026 aquaporin NIP; Provi 99.4 2E-12 4.4E-17 114.9 8.9 100 143-244 66-173 (298)
18 PLN00183 putative aquaporin NI 99.2 2.3E-11 5E-16 107.2 8.4 107 136-244 32-147 (274)
19 PLN00166 aquaporin TIP2; Provi 99.2 2.4E-11 5.2E-16 105.9 8.4 98 145-244 15-125 (250)
20 PLN00167 aquaporin TIP5; Provi 99.2 1.4E-10 3.1E-15 101.4 9.6 100 143-244 17-129 (256)
21 PLN00027 aquaporin TIP; Provis 99.1 1.8E-10 3.9E-15 100.6 8.3 98 145-244 17-127 (252)
22 PLN00182 putative aquaporin NI 99.1 2.5E-10 5.5E-15 101.0 8.5 103 139-243 33-143 (283)
23 PRK05420 aquaporin Z; Provisio 99.1 4.8E-10 1E-14 96.7 8.2 94 148-243 2-104 (231)
24 cd00333 MIP Major intrinsic pr 99.1 3.2E-10 7E-15 97.6 6.9 93 150-244 2-103 (228)
25 PTZ00016 aquaglyceroporin; Pro 99.0 9.1E-10 2E-14 98.2 8.3 99 144-244 46-152 (294)
26 TIGR00861 MIP MIP family chann 98.9 1.6E-09 3.5E-14 92.5 6.9 90 153-244 1-103 (216)
27 KOG0223|consensus 98.4 9.8E-07 2.1E-11 76.2 8.5 100 144-245 7-114 (238)
28 PF00230 MIP: Major intrinsic 98.4 1.6E-06 3.5E-11 74.3 8.2 98 145-244 5-116 (227)
29 COG0580 GlpF Glycerol uptake f 98.2 4.9E-06 1.1E-10 71.9 7.9 98 146-245 3-111 (241)
30 KOG0224|consensus 97.8 4E-05 8.7E-10 67.6 6.3 91 145-237 29-128 (316)
31 COG2116 FocA Formate/nitrite f 85.5 18 0.0004 31.9 11.5 164 81-247 89-262 (265)
32 COG0730 Predicted permeases [G 54.2 1.4E+02 0.0031 25.6 9.6 33 87-119 64-96 (258)
33 TIGR02854 spore_II_GA sigma-E 52.2 1.1E+02 0.0023 27.3 8.6 52 88-166 25-76 (288)
34 PRK10805 formate transporter; 41.4 2.6E+02 0.0056 24.9 10.4 85 81-167 93-181 (285)
35 PF03033 Glyco_transf_28: Glyc 39.2 7 0.00015 29.8 -0.9 18 76-93 8-25 (139)
36 PF01226 Form_Nir_trans: Forma 37.4 2.8E+02 0.006 24.1 16.3 88 80-168 81-171 (250)
37 PF14034 Spore_YtrH: Sporulati 35.8 98 0.0021 23.3 4.8 45 77-121 53-99 (102)
38 PF04632 FUSC: Fusaric acid re 34.2 4.5E+02 0.0098 25.7 15.3 49 74-122 361-412 (650)
39 PF14147 Spore_YhaL: Sporulati 32.2 29 0.00062 22.7 1.3 17 220-238 3-19 (52)
40 PRK09713 focB putative formate 29.0 4.2E+02 0.009 23.6 9.4 86 81-168 92-181 (282)
41 PRK09765 PTS system 2-O-a-mann 27.6 4.2E+02 0.0092 26.4 9.2 34 78-121 362-395 (631)
42 PF12732 YtxH: YtxH-like prote 25.8 59 0.0013 22.5 2.1 23 223-245 1-23 (74)
43 PRK11562 nitrite transporter N 25.3 4.7E+02 0.01 23.0 18.8 86 81-168 83-171 (268)
44 PF01925 TauE: Sulfite exporte 22.5 4.5E+02 0.0098 21.8 9.5 27 92-118 59-85 (240)
45 PRK10621 hypothetical protein; 22.4 5.1E+02 0.011 22.3 9.1 30 90-119 71-100 (266)
46 PRK12446 undecaprenyldiphospho 20.7 37 0.00081 30.9 0.4 17 76-92 11-27 (352)
No 1
>KOG0223|consensus
Probab=100.00 E-value=1e-43 Score=304.36 Aligned_cols=206 Identities=19% Similarity=0.228 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhh----cchhH----HHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHhccCchHHHH
Q psy6903 29 QDLLLEVVATAELCASCYELIIVAD----NWGVY----AYGVALYILTIWWSLNWDDASACPYTHLEDVAERRSNLLIAL 100 (249)
Q Consensus 29 ~~~~~EfigT~~l~~~~~~~~~~~~----~~g~~----~~g~~l~~~~~~~~~~~sGah~NPavTla~~l~g~~~~~~~~ 100 (249)
|++++||++|++++..........+ ..+.. .+|+.+++++... .++||||+|||||+++++.|++++.+.+
T Consensus 12 ~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~-g~iSGaH~NPAVT~a~~~~~~isl~~~~ 90 (238)
T KOG0223|consen 12 RALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYST-GHISGAHFNPAVTLAFAVGGKISLFRAV 90 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhh-ccccccccCHHHHHHHHHhCCCcHHHhH
Confidence 8899999999998654333222222 12222 3455555443333 3689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHh-hhc-CCchhhh
Q psy6903 101 FKIGAELLGGYIIIKYIQLLWSLEIAHVHVGQANTVYNCQADLQVPVLLGMLVEGVATFLCRFMSRVF-AEK-VPKLSMI 178 (249)
Q Consensus 101 ~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~s~~~~~~~E~~~Tf~l~~~v~~~-~~~-~~~~~~~ 178 (249)
.|+++|++|+++|+.+++.+.+.+....+.. .-.+.++.+..|+++.|++.||.|+++++.+ .|. ++...++
T Consensus 91 ~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~~~a~l 164 (238)
T KOG0223|consen 91 AYIVAQLLGAIAGAALLKVVTPGQYNRKGLG------LTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRSELAPL 164 (238)
T ss_pred HHHHHHHHHHHHHHHHHheecCcccccCCcc------eeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCcccHHH
Confidence 9999999999999999999987642111111 1235678899999999999999999999874 332 3335567
Q ss_pred HHHHHHHHHHHhhhccccccccchhhhhhhhccCCcccccceeehhhhhHHHHHHHHHHHHhhhcc
Q psy6903 179 LDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFNRMQAS 244 (249)
Q Consensus 179 ~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~~~~~~~~~~wVYwvgP~~Ga~la~~~~~~~~~~ 244 (249)
.+++.+...++.++++||++|||||+|||++..+ .|+++||||+||++|+++++++||.+...
T Consensus 165 ~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~ 227 (238)
T KOG0223|consen 165 AIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHWIYWVGPLLGAILAALIYRLVFIP 227 (238)
T ss_pred HHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEEEEEhhHHHHHHHHHHHHHHhccC
Confidence 8888888888999999999999999999999854 49999999999999999999999997553
No 2
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.4e-41 Score=285.98 Aligned_cols=214 Identities=16% Similarity=0.119 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHHH----hhHHHHHhh---hcchh----HHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHhccCchH
Q psy6903 29 QDLLLEVVATAELCA----SCYELIIVA---DNWGV----YAYGVALYILTIWWSLNWDDASACPYTHLEDVAERRSNLL 97 (249)
Q Consensus 29 ~~~~~EfigT~~l~~----~~~~~~~~~---~~~g~----~~~g~~l~~~~~~~~~~~sGah~NPavTla~~l~g~~~~~ 97 (249)
|++++||+||++|+. ++....... .+.++ .++|+.+...++.. ..+||||+|||||+++++.|+++++
T Consensus 6 ~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~-g~iSGaHlNPAVTi~la~~g~fp~~ 84 (241)
T COG0580 6 KKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAF-GGISGAHLNPAVTIALAVRGRFPWR 84 (241)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhc-cCcCccccChHHHHHHHHhCCCCHH
Confidence 678999999999853 333333222 12222 25666666554444 4689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhhccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhh-cCC--
Q psy6903 98 IALFKIGAELLGGYIIIKYIQLLWSLEIAHVH-VGQANTVYNCQADLQVPVLLGMLVEGVATFLCRFMSRVFAE-KVP-- 173 (249)
Q Consensus 98 ~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~-~~~~~~~~~c~~~~~~s~~~~~~~E~~~Tf~l~~~v~~~~~-~~~-- 173 (249)
+.+.|+++|++||++|+.+++.+++.+..+.+ .........|+.|...+..++++.|+++||+|++.++.+.+ ++.
T Consensus 85 ~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~~~~~~~~~ 164 (241)
T COG0580 85 KVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILALTDDGNANA 164 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Confidence 99999999999999999999999987665554 22222355677666678999999999999999999999764 332
Q ss_pred chhhhHHHHHHHHHHHhhhccccccccchhhhhhhhc---cC---CcccccceeehhhhhHHHHHHHHHHHHhhhc
Q psy6903 174 KLSMILDATFGTLLVVAAFSYSGGYFNPALAGSLKYG---CT---GHTVTEHLVVYWLSPTIGSLLSVFAFNRMQA 243 (249)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~---~~---~~~~~~~~wVYwvgP~~Ga~la~~~~~~~~~ 243 (249)
...++.+++.+..++++.++.||.++|||||+||.+. .. ...+++|.|+||+||++|+++++++||.+..
T Consensus 165 ~~apl~iGllv~~i~~s~g~~TG~aiNPARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa~lg~~~~~~~~~ 240 (241)
T COG0580 165 GFAPLAIGLLVTAIGLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLYKLLLG 240 (241)
T ss_pred cchHHHHHHHHHHHHHHhcCCCCCccChHHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHHHHHHHHHHHHcc
Confidence 2567788998888889999999999999999999862 22 1112279999999999999999999997653
No 3
>PRK05420 aquaporin Z; Provisional
Probab=100.00 E-value=1.5e-40 Score=286.06 Aligned_cols=216 Identities=17% Similarity=0.145 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhh---h--cchh----HHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHhccCchHHH
Q psy6903 29 QDLLLEVVATAELCASCYELIIVA---D--NWGV----YAYGVALYILTIWWSLNWDDASACPYTHLEDVAERRSNLLIA 99 (249)
Q Consensus 29 ~~~~~EfigT~~l~~~~~~~~~~~---~--~~g~----~~~g~~l~~~~~~~~~~~sGah~NPavTla~~l~g~~~~~~~ 99 (249)
|++++||+||++++.......... . ..+. ..+|+.+++.+.. ..++||+|+|||||++.++.|++++.+.
T Consensus 3 ~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~-~g~iSG~h~NPAvtl~~~~~~~i~~~~~ 81 (231)
T PRK05420 3 KKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYA-VGHISGGHFNPAVSVGLWAGGRFPAKEL 81 (231)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHH-HhCcccccCCHHHHHHHHHhCCCCHHHh
Confidence 688999999999865332222111 1 1122 2556665555444 3468999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--hccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcCC--ch
Q psy6903 100 LFKIGAELLGGYIIIKYIQLLWSLEIAHVHVG--QANTVYNCQADLQVPVLLGMLVEGVATFLCRFMSRVFAEKVP--KL 175 (249)
Q Consensus 100 ~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~--~~~~~~~c~~~~~~s~~~~~~~E~~~Tf~l~~~v~~~~~~~~--~~ 175 (249)
+.|+++|++||++|+.+++..++.+......+ ..........+...+..++++.|+++||+|+++++...++++ ..
T Consensus 82 ~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~~~~~ 161 (231)
T PRK05420 82 VPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPGGYSLLAALVCEVVLTAFFLLVILGATDKRAPAGF 161 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 99999999999999999998775321100000 000000111233457899999999999999999998765432 23
Q ss_pred hhhHHHHHHHHHHHhhhccccccccchhhhhhhhccCCcccccceeehhhhhHHHHHHHHHHHHhhhcccc
Q psy6903 176 SMILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFNRMQASKI 246 (249)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~~~~~~~~~~wVYwvgP~~Ga~la~~~~~~~~~~~~ 246 (249)
.++.+++.+..+...++++||++|||||+++|++..+ +..++++||||+||++|+++++++|+++.+|||
T Consensus 162 ~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g-~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~~ 231 (231)
T PRK05420 162 APIAIGLALTLIHLISIPVTNTSVNPARSTGVALFVG-GWALEQLWLFWVAPIVGAIIGGLIYRLLLEKDD 231 (231)
T ss_pred hHHHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhC-CCCccceEEeehHHHHHHHHHHHHHHHHhccCC
Confidence 5677888888888889999999999999999998864 234578999999999999999999999977664
No 4
>PLN00184 aquaporin NIP1; Provisional
Probab=100.00 E-value=3.2e-40 Score=292.13 Aligned_cols=208 Identities=18% Similarity=0.197 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhh----cchh----HHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHhccCchHHHH
Q psy6903 29 QDLLLEVVATAELCASCYELIIVAD----NWGV----YAYGVALYILTIWWSLNWDDASACPYTHLEDVAERRSNLLIAL 100 (249)
Q Consensus 29 ~~~~~EfigT~~l~~~~~~~~~~~~----~~g~----~~~g~~l~~~~~~~~~~~sGah~NPavTla~~l~g~~~~~~~~ 100 (249)
|++++||+|||+|+........... ..+. .++|+.+++.++. ..++||||+|||||++.++.|++++.+.+
T Consensus 55 ~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~-~g~iSGaH~NPAVTla~al~g~~~~~~~~ 133 (296)
T PLN00184 55 QKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYS-LGHISGAHINPAVTIAFASCGRFPLKQVP 133 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHH-hcCCCccccCHHHHHHHHHhCCCCHHHHH
Confidence 7799999999998654432211111 1122 2446665555444 35689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcCC---chhh
Q psy6903 101 FKIGAELLGGYIIIKYIQLLWSLEIAHVHVGQANTVYNCQADLQVPVLLGMLVEGVATFLCRFMSRVFAEKVP---KLSM 177 (249)
Q Consensus 101 ~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~s~~~~~~~E~~~Tf~l~~~v~~~~~~~~---~~~~ 177 (249)
.|+++|++||++|+.+++.+++....... +.. ....++.+ ..+..++++.|+++||+|+++++.+.++++ ...+
T Consensus 134 ~YiiaQllGA~lga~~~~~l~~~~~~~~~-~~~-~~~~~t~p-~~s~~~af~~E~i~TfvLv~~il~~~~~~~~~~~~~~ 210 (296)
T PLN00184 134 AYVISQVIGSTLAAATLRLLFGLDHDVCS-GKH-DVFIGSSP-VGSDLQAFVMEFIVTFYLMFIISGVATDNRAIGELAG 210 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhccc-ccc-ceeeccCc-CCcHHHHHHHHHHHHHHHHHHHHheeccCcCCCcchH
Confidence 99999999999999999998864322111 110 01123333 358899999999999999999998744322 1356
Q ss_pred hHHHHHHHHHHHhhhccccccccchhhhhhhhccCCcccccceeehhhhhHHHHHHHHHHHHhhhc
Q psy6903 178 ILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFNRMQA 243 (249)
Q Consensus 178 ~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~~~~~~~~~~wVYwvgP~~Ga~la~~~~~~~~~ 243 (249)
+.+++.+..+++..+++||++|||||+|||++... .|+++||||+||++|+++++++|+++..
T Consensus 211 l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~---~~~~~WVy~vgPilGa~laal~y~~l~~ 273 (296)
T PLN00184 211 LAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYG---CYKGIWIYIVAPTLGAIAGAWVYNTVRY 273 (296)
T ss_pred HHHHHHHHHHHHHhcccCccccCchhhHHHHHHhh---cccccchHHhHHHHHHHHHHHHHHHHhc
Confidence 77888888888899999999999999999998743 5788999999999999999999999844
No 5
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=100.00 E-value=3.5e-40 Score=283.36 Aligned_cols=200 Identities=21% Similarity=0.223 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH----hhhc-----c-hhH----HHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHhccC
Q psy6903 29 QDLLLEVVATAELCASCYELII----VADN-----W-GVY----AYGVALYILTIWWSLNWDDASACPYTHLEDVAERRS 94 (249)
Q Consensus 29 ~~~~~EfigT~~l~~~~~~~~~----~~~~-----~-g~~----~~g~~l~~~~~~~~~~~sGah~NPavTla~~l~g~~ 94 (249)
|++++||+||++++........ ..++ . +.. .+++.++..+... .++||||+||+||++.++.|++
T Consensus 9 r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~-~~iSGaH~NPaVTla~~l~g~~ 87 (227)
T PF00230_consen 9 RKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAF-GPISGAHFNPAVTLAFALTGRI 87 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHH-HHHHTSS-SHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhh-hhccccccccchhhheeeeeee
Confidence 8999999999998543322211 1111 0 111 3455555444443 4589999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q psy6903 95 NLLIALFKIGAELLGGYIIIKYIQLLWSLEIAHVHVGQANTVYNCQADLQVPVLLGMLVEGVATFLCRFMSRVFAEKVPK 174 (249)
Q Consensus 95 ~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~s~~~~~~~E~~~Tf~l~~~v~~~~~~~~~ 174 (249)
++.+.+.|+++|++|+++|+.+++.+++...... ....+.++.+.+..++++.|+++||+|+++++.+.+++++
T Consensus 88 ~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~~~~~~~ 161 (227)
T PF00230_consen 88 SWKKAIVYIIAQFLGAFLGALLVYALYPDSNSAA------GIFATTPPPGISLGQAFFSEFIGTFILVLVILAVADDKRK 161 (227)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHTCT------TTTSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHHTSTTSS
T ss_pred cccceeeEEeeccccccccccchhhcccCccccc------ccccccccccchhhhhhhhhhhhhhHHHhhhhhhcccccc
Confidence 9999999999999999999999999887541111 1223457778899999999999999999999988664332
Q ss_pred h-----hhhHHHHHHHHHHHhhhccccccccchhhhhhhhccCCcccccceeehhhhhHHHHHHHHHHH
Q psy6903 175 L-----SMILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAF 238 (249)
Q Consensus 175 ~-----~~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~~~~~~~~~~wVYwvgP~~Ga~la~~~~ 238 (249)
. .++.+++.+..+...+++.||++|||||+++|++.... |+++||||+||++|+++++++|
T Consensus 162 ~~~~~~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~---~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 162 FPLGPLAPLAIGLTVGALVLAGGPYTGASLNPARALGPALFSGI---WDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp STSSGGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHTH---HTTTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeEEEEEeecccccccccccccCchhhcCceeeccc---CCeEEEEEehHHHHHHHHHhhC
Confidence 2 35667777777778889999999999999999998643 8899999999999999999987
No 6
>PLN00026 aquaporin NIP; Provisional
Probab=100.00 E-value=1.6e-38 Score=280.80 Aligned_cols=205 Identities=17% Similarity=0.092 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhc----chh----HHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHhccCchHHHH
Q psy6903 29 QDLLLEVVATAELCASCYELIIVADN----WGV----YAYGVALYILTIWWSLNWDDASACPYTHLEDVAERRSNLLIAL 100 (249)
Q Consensus 29 ~~~~~EfigT~~l~~~~~~~~~~~~~----~g~----~~~g~~l~~~~~~~~~~~sGah~NPavTla~~l~g~~~~~~~~ 100 (249)
|++++||+|||+|+.......+..+. .+. .++|+.+++.++.. .++||||+|||||++.++.|++++.+.+
T Consensus 72 r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~-g~ISGaHlNPAVTla~al~g~~~~~~~~ 150 (298)
T PLN00026 72 RKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILST-GHISGAHLNPSLTIAFAALRHFPWKHVP 150 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHh-hccCccccCHHHHHHHHHhCCCcHHHHH
Confidence 78999999999986654432222111 111 24566655554443 4689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHhh-hcCCc--hhh
Q psy6903 101 FKIGAELLGGYIIIKYIQLLWSLEIAHVHVGQANTVYNCQADLQVPVLLGMLVEGVATFLCRFMSRVFA-EKVPK--LSM 177 (249)
Q Consensus 101 ~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~s~~~~~~~E~~~Tf~l~~~v~~~~-~~~~~--~~~ 177 (249)
.|+++|++||++|+.+++.+++... . ..++. +..+..++++.|+++||+|+++++.+. +++++ ..+
T Consensus 151 ~YiiaQilGAi~aa~~~~~~~~~~~----~------~g~t~-p~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~~~~~~~~ 219 (298)
T PLN00026 151 AYIAAQVSASICASFALKGVFHPFM----S------GGVTV-PSVSTGQAFALEFIITFNLLFVVTAVATDTRAVGELAG 219 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc----c------Cceee-ecccHHHHHHHHHHHHHHHHHhheeeecCCCCcCCccc
Confidence 9999999999999999998875311 0 11222 356889999999999999999998653 22221 345
Q ss_pred hHHHHHHHHHHHhhhccccccccchhhhhhhhccCCcccccceeehhhhhHHHHHHHHHHHHhhhcccccc
Q psy6903 178 ILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFNRMQASKIKR 248 (249)
Q Consensus 178 ~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~~~~~~~~~~wVYwvgP~~Ga~la~~~~~~~~~~~~k~ 248 (249)
+.+++.+...++.++++||++|||||+++|++..+ .|+++||||+||++|+++++++|+.+.-.++|+
T Consensus 220 l~iGl~V~~~~l~~g~~TGa~mNPARtlgPal~~~---~~~~~wVy~vaPilGAilga~ly~~~~~~~~~~ 287 (298)
T PLN00026 220 IAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAG---NYRAIWIYLVAPTLGALAGAGTYTAVKLREEDG 287 (298)
T ss_pred hHHHHHHHHHHHHhcccCccccChHHHHHHHHhcC---CchheeHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 77888888888899999999999999999998743 588999999999999999999999984444333
No 7
>PTZ00016 aquaglyceroporin; Provisional
Probab=100.00 E-value=3.3e-38 Score=279.83 Aligned_cols=214 Identities=12% Similarity=0.066 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH---hhh-cchh----HHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHhccCchHHHH
Q psy6903 29 QDLLLEVVATAELCASCYELII---VAD-NWGV----YAYGVALYILTIWWSLNWDDASACPYTHLEDVAERRSNLLIAL 100 (249)
Q Consensus 29 ~~~~~EfigT~~l~~~~~~~~~---~~~-~~g~----~~~g~~l~~~~~~~~~~~sGah~NPavTla~~l~g~~~~~~~~ 100 (249)
|++++||+||++++........ ..+ ..+. .++|+.++..++. ...+||||+|||||++.++.|++++.+.+
T Consensus 51 ~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~-~g~iSG~h~NPAVTla~~l~g~i~~~~~~ 129 (294)
T PTZ00016 51 REYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLV-SAGISGGHLNPAVTLGNAVFGKFPWKKLP 129 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHH-hcccCcCccCHHHHHHHHHhccCCHHHHH
Confidence 7899999999998643222111 111 1122 2455555554444 34689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh--------ccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy6903 101 FKIGAELLGGYIIIKYIQLLWSLEIAHVHVGQ--------ANTVYNCQADLQVPVLLGMLVEGVATFLCRFMSRVFAEKV 172 (249)
Q Consensus 101 ~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~c~~~~~~s~~~~~~~E~~~Tf~l~~~v~~~~~~~ 172 (249)
.|+++|++||++|+.+++.+++..+.+...+. ......++. ++.+..++++.|+++||+|+++++.+.+++
T Consensus 130 ~YiiaQ~lGa~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~-p~~s~~~a~~~E~i~T~iLv~~ila~~d~~ 208 (294)
T PTZ00016 130 GYFVAQLLGAFVGAACVYGLYYGFFKDHGIPELPWETMANGFAGVFATY-PREGNFYAIFSELILTAILLLVILAITDPN 208 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcccccccccccccceeeCC-CCccHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999999876443321110 000112223 367889999999999999999999876543
Q ss_pred C-c---hhhhHHHHHHHHHHHhhhccccccccchhhhhhhhccC---Ccccc----cceeehhhhhHHHHHHHHHHHHhh
Q psy6903 173 P-K---LSMILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCT---GHTVT----EHLVVYWLSPTIGSLLSVFAFNRM 241 (249)
Q Consensus 173 ~-~---~~~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~~---~~~~~----~~~wVYwvgP~~Ga~la~~~~~~~ 241 (249)
. . ..++.+++.+..+.+..++.||++|||||||||++... |...| .|+||||+||++|+++++++|+++
T Consensus 209 ~~~~~~~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGPal~~~~~~g~~~~~~~~~~~WVy~vgP~vGa~~aally~~l 288 (294)
T PTZ00016 209 NCPAFNYLPVAVGLLVFVIGISFGGNTGYALNPARDLGPRLFSAILWGSEVFTKDNYYFWVPLVAPFVGAVLGMFLYDKF 288 (294)
T ss_pred cCCCcCcccHHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHhccccccCcCCceeeeeehHHHHHHHHHHHHHHHH
Confidence 2 1 24567788777777888999999999999999987641 21223 378999999999999999999998
Q ss_pred hcc
Q psy6903 242 QAS 244 (249)
Q Consensus 242 ~~~ 244 (249)
.+.
T Consensus 289 l~~ 291 (294)
T PTZ00016 289 IPP 291 (294)
T ss_pred hCC
Confidence 643
No 8
>KOG0224|consensus
Probab=100.00 E-value=1.7e-39 Score=280.84 Aligned_cols=212 Identities=14% Similarity=0.121 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHHHH----hhHHHHHhhhcchh-----HHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHhccCchHHH
Q psy6903 29 QDLLLEVVATAELCA----SCYELIIVADNWGV-----YAYGVALYILTIWWSLNWDDASACPYTHLEDVAERRSNLLIA 99 (249)
Q Consensus 29 ~~~~~EfigT~~l~~----~~~~~~~~~~~~g~-----~~~g~~l~~~~~~~~~~~sGah~NPavTla~~l~g~~~~~~~ 99 (249)
|++++||+||++||. ++.+..+.....|. .+||+.++..+ ..+..+||||+|||||+++++.||++|.|.
T Consensus 33 Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gV-yvag~iSGgHlNPAVS~a~~~~g~~p~~k~ 111 (316)
T KOG0224|consen 33 REFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGV-YVAGRISGGHLNPAVSLAMCILGRLPWKKF 111 (316)
T ss_pred HHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHH-HhhccccccccCHHHHHHHHHhcCCChhhh
Confidence 899999999999853 33333333223332 26777766554 445579999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc-----ccccc--c-CCCCcchHHHHHHHHHHHHHHHHHHHHhhhc
Q psy6903 100 LFKIGAELLGGYIIIKYIQLLWSLEIAHVHVGQAN-----TVYNC--Q-ADLQVPVLLGMLVEGVATFLCRFMSRVFAEK 171 (249)
Q Consensus 100 ~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~c--~-~~~~~s~~~~~~~E~~~Tf~l~~~v~~~~~~ 171 (249)
+.|+++|++||++|+..++.++...+.+..++.+. ..+.| + |+++.|..++|+.|+++|.+|+..++++.|+
T Consensus 112 p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa~L~~~l~aI~D~ 191 (316)
T KOG0224|consen 112 PVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTAMLVLCLFAITDK 191 (316)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHHHHHhheeEEecC
Confidence 99999999999999999999998877777666652 12233 3 7789999999999999999999999988775
Q ss_pred CCc----hhhhHHHHHHHHHHHhhhccccccccchhhhhhhhcc-----CCcccc---cceeehhhhhHHHHHHHHHHHH
Q psy6903 172 VPK----LSMILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGC-----TGHTVT---EHLVVYWLSPTIGSLLSVFAFN 239 (249)
Q Consensus 172 ~~~----~~~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~-----~~~~~~---~~~wVYwvgP~~Ga~la~~~~~ 239 (249)
+.. ..++.+++++..+.++.+.-||..+|||||++|.+.+ +.+.++ .+.|++|+||++|+++++++|+
T Consensus 192 rN~~p~g~~p~~iG~lv~~Ig~s~G~N~GyaiNPARDlgPRlF~~~aGyG~~vF~~~~~~~WvPivgPl~Gai~G~~iY~ 271 (316)
T KOG0224|consen 192 RNPIPTGLHPLVIGILVVAIGMSLGYNTGYAINPARDLGPRLFTSIAGYGPEVFSAGHNWWWVPIVGPLIGAILGGWIYD 271 (316)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHhhcccCcccCcccccchHHHHHHHhcchhhcccCCceeeeeehhhhhhhhhhhhhhe
Confidence 433 2456777777777778888999999999999998652 222222 5788999999999999999999
Q ss_pred hh
Q psy6903 240 RM 241 (249)
Q Consensus 240 ~~ 241 (249)
++
T Consensus 272 ~~ 273 (316)
T KOG0224|consen 272 FF 273 (316)
T ss_pred ee
Confidence 96
No 9
>PLN00027 aquaporin TIP; Provisional
Probab=100.00 E-value=1.1e-37 Score=271.41 Aligned_cols=201 Identities=17% Similarity=0.124 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHH-----Hhhh----cch----hHHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHhccCc
Q psy6903 29 QDLLLEVVATAELCASCYELI-----IVAD----NWG----VYAYGVALYILTIWWSLNWDDASACPYTHLEDVAERRSN 95 (249)
Q Consensus 29 ~~~~~EfigT~~l~~~~~~~~-----~~~~----~~g----~~~~g~~l~~~~~~~~~~~sGah~NPavTla~~l~g~~~ 95 (249)
|++++||+||++++....... ...+ ..+ ..++|+.+++.+.. ...+||||+|||+|++.++.|+++
T Consensus 21 ~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~-~~~iSGah~NPAvtl~~~~~g~~~ 99 (252)
T PLN00027 21 KAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSV-GANISGGHVNPAVTFGAFIGGNIT 99 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHH-HcccCccccChHHHHHHHHhCCCC
Confidence 789999999999854332211 1111 112 12455655544333 446899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHhh-hcCCc
Q psy6903 96 LLIALFKIGAELLGGYIIIKYIQLLWSLEIAHVHVGQANTVYNCQADLQVPVLLGMLVEGVATFLCRFMSRVFA-EKVPK 174 (249)
Q Consensus 96 ~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~s~~~~~~~E~~~Tf~l~~~v~~~~-~~~~~ 174 (249)
+.+...|+++|++||++|+.+.+...+... . ...+ ...+.+..++++.|+++||+|+++++.+. +++++
T Consensus 100 ~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~-------~--~~~~-~~~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~ 169 (252)
T PLN00027 100 LLRGILYWIAQLLGSVVACLLLKFSTGGLE-------T--SAFS-LSSGVGVWNAFVFEIVMTFGLVYTVYATAVDPKKG 169 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-------c--cccc-CCCCccHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 999999999999999999998886653210 0 1112 22467899999999999999999998764 32221
Q ss_pred ----hhhhHHHHHHHHHHHhhhccccccccchhhhhhhhccCCcccccceeehhhhhHHHHHHHHHHHHhhhc
Q psy6903 175 ----LSMILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFNRMQA 243 (249)
Q Consensus 175 ----~~~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~~~~~~~~~~wVYwvgP~~Ga~la~~~~~~~~~ 243 (249)
..++.+++.+..+++.++++||++|||||++||++... .|+++||||+||++|+++++++|+++..
T Consensus 170 ~~~~~~p~~iGl~v~~~~~~~g~~TG~~~NPAR~~gPal~~~---~~~~~wvy~vgP~~Ga~laa~~y~~l~~ 239 (252)
T PLN00027 170 DLGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW---TWTNHWVYWAGPLIGGGIAGLVYELIFI 239 (252)
T ss_pred CccchHHHHHHHHHHHHHHhcccccccccCcchhHHHHHHhh---cchhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567788888888889999999999999999999853 5889999999999999999999999864
No 10
>PLN00166 aquaporin TIP2; Provisional
Probab=100.00 E-value=1.3e-37 Score=270.26 Aligned_cols=201 Identities=19% Similarity=0.193 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH----hh-h----cchh----HHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHhccCc
Q psy6903 29 QDLLLEVVATAELCASCYELII----VA-D----NWGV----YAYGVALYILTIWWSLNWDDASACPYTHLEDVAERRSN 95 (249)
Q Consensus 29 ~~~~~EfigT~~l~~~~~~~~~----~~-~----~~g~----~~~g~~l~~~~~~~~~~~sGah~NPavTla~~l~g~~~ 95 (249)
|++++|++||++++........ .. + ..+. ..+|+.++..+.+. .++||+|+|||+|++.++.|+++
T Consensus 19 ~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~-g~iSGah~NPAvt~~~~l~g~~~ 97 (250)
T PLN00166 19 KAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIA-ANISGGHLNPAVTLGLAIGGNIT 97 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHH-hcccccccCHHHHHHHHHhCCCC
Confidence 7899999999998654332211 11 0 1111 24566666554443 46899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhh-cCCc
Q psy6903 96 LLIALFKIGAELLGGYIIIKYIQLLWSLEIAHVHVGQANTVYNCQADLQVPVLLGMLVEGVATFLCRFMSRVFAE-KVPK 174 (249)
Q Consensus 96 ~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~s~~~~~~~E~~~Tf~l~~~v~~~~~-~~~~ 174 (249)
+.+.+.|+++|++|+++|+.+.+.+.+.+. ... . ....+.+..++++.|+++||+|+++++.+.+ ++++
T Consensus 98 ~~~~~~y~~aq~lGa~~~a~~~~~~~~~~~----~~~----~--~~~~~~~~~~~~~~E~v~Tf~Lv~~i~~~~~~~~~~ 167 (250)
T PLN00166 98 IITGFFYWIAQCLGSIVACLLLVFVTNGES----VPT----H--GVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKG 167 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCC----Ccc----c--ccCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999999999999988764211 010 0 1223568899999999999999999998643 2221
Q ss_pred ----hhhhHHHHHHHHHHHhhhccccccccchhhhhhhhccCCcccccceeehhhhhHHHHHHHHHHHHhhhc
Q psy6903 175 ----LSMILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFNRMQA 243 (249)
Q Consensus 175 ----~~~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~~~~~~~~~~wVYwvgP~~Ga~la~~~~~~~~~ 243 (249)
..++.+++.+..+++.++++||++|||||+|||++..+ .|+|+||||+||++|+++++++||.+..
T Consensus 168 ~~~~~~p~~iGl~v~~~~~~~~~~tG~~~NPAR~~gPal~~~---~~~~~wvywvgPi~Ga~~aa~~y~~l~~ 237 (250)
T PLN00166 168 SLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG---DFSQIWIYWVGPLVGGALAGLIYGDVFI 237 (250)
T ss_pred ccccchhHHHHHHHHHHHHcccCCCCCccCchHhhHHHHhcC---CCcccchhhHHHHHHHHHHHHHHHHHhc
Confidence 34677888888888899999999999999999999853 5889999999999999999999998744
No 11
>PLN00182 putative aquaporin NIP4; Provisional
Probab=100.00 E-value=3.5e-37 Score=271.22 Aligned_cols=201 Identities=19% Similarity=0.185 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHh---h-hcchh----HHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHhccCchHHHH
Q psy6903 29 QDLLLEVVATAELCASCYELIIV---A-DNWGV----YAYGVALYILTIWWSLNWDDASACPYTHLEDVAERRSNLLIAL 100 (249)
Q Consensus 29 ~~~~~EfigT~~l~~~~~~~~~~---~-~~~g~----~~~g~~l~~~~~~~~~~~sGah~NPavTla~~l~g~~~~~~~~ 100 (249)
|++++|++|||+|+......... . ...+. .++|+.+++.+.. ..++||||+|||||++.++.|++++.+.+
T Consensus 43 ~~~~aEflgTflLvf~g~g~~~~~~~~~~~~~~~~iala~Gl~v~~~i~~-~g~iSGah~NPAVTla~~~~~~~~~~~~~ 121 (283)
T PLN00182 43 QKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYS-TGHISGAHFNPAVTVTFAIFRRFPWYQVP 121 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHH-hcCCCccccCHHHHHHHHHHcCCCHHHHH
Confidence 78899999999986533322111 1 11122 2456665554443 35689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhh-cCC--chhh
Q psy6903 101 FKIGAELLGGYIIIKYIQLLWSLEIAHVHVGQANTVYNCQADLQVPVLLGMLVEGVATFLCRFMSRVFAE-KVP--KLSM 177 (249)
Q Consensus 101 ~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~s~~~~~~~E~~~Tf~l~~~v~~~~~-~~~--~~~~ 177 (249)
.|+++|++||++|+.+++.+++... . ...|+. ++.+..++++.|+++||+|+++++.+.. ++. ...+
T Consensus 122 ~Yi~aQ~lGa~~ga~~~~~~~~~~~----~-----~~~~~~-p~~s~~~a~~~E~l~TfiLv~~i~~~~~~~~~~~~~~~ 191 (283)
T PLN00182 122 LYIGAQLTGSLLASLTLRLMFNVTP----E-----AFFGTT-PTDSSGQALVAEIIISFLLMFVISGVATDSRAVGELAG 191 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc----c-----ceeeCC-CCcchHHHHHHHHHHHHHHHHHHHhheeccccCCcchh
Confidence 9999999999999999998874210 0 112222 2457899999999999999999887632 221 1245
Q ss_pred hHHHHHHHHHHHhhhccccccccchhhhhhhhccCCcccccceeehhhhhHHHHHHHHHHHHhhhc
Q psy6903 178 ILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFNRMQA 243 (249)
Q Consensus 178 ~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~~~~~~~~~~wVYwvgP~~Ga~la~~~~~~~~~ 243 (249)
+..++.+...++..+++||++|||||+++|++..+ .|+++|+||+||++|+++++++|+++..
T Consensus 192 l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~---~~~~~wvY~vap~lGA~lgally~~l~~ 254 (283)
T PLN00182 192 IAVGMTIILNVFVAGPISGASMNPARSLGPAIVMG---RYKGIWVYIVGPFVGIIAGGFVYNLIRF 254 (283)
T ss_pred HHHHHHHHHHHHHccccCccccChHHHHHHHHHhc---cccceeHHHHHHHHHHHHHHHHHHHHhc
Confidence 66777777788889999999999999999998742 4789999999999999999999999853
No 12
>PLN00167 aquaporin TIP5; Provisional
Probab=100.00 E-value=6.9e-37 Score=266.54 Aligned_cols=201 Identities=17% Similarity=0.171 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHh-----hh----cchh----HHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHhccCc
Q psy6903 29 QDLLLEVVATAELCASCYELIIV-----AD----NWGV----YAYGVALYILTIWWSLNWDDASACPYTHLEDVAERRSN 95 (249)
Q Consensus 29 ~~~~~EfigT~~l~~~~~~~~~~-----~~----~~g~----~~~g~~l~~~~~~~~~~~sGah~NPavTla~~l~g~~~ 95 (249)
|++++||+||++++......... .+ ..+. .++|+.++..++.. ..+||+|+|||+|++.++.|+++
T Consensus 23 ~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~-g~iSGah~NPAvtl~~~~~g~~~ 101 (256)
T PLN00167 23 RSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIA-ANISGGHVNPAVTFGMAVGGHIS 101 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHh-hcccccccCHHHHHHHHHhCCCc
Confidence 78999999999986433222111 11 0111 35566666554444 46899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcC-Cc
Q psy6903 96 LLIALFKIGAELLGGYIIIKYIQLLWSLEIAHVHVGQANTVYNCQADLQVPVLLGMLVEGVATFLCRFMSRVFAEKV-PK 174 (249)
Q Consensus 96 ~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~s~~~~~~~E~~~Tf~l~~~v~~~~~~~-~~ 174 (249)
+++.+.|+++|++||++|+.+++.+++.. +.... ....+.+..++++.|+++||+|+++++...+++ .+
T Consensus 102 ~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~----~~~~~------~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~~~~~~~ 171 (256)
T PLN00167 102 VPTAMFYWISQMLASVMACLFLKVTTVGQ----HVPTY------KIAEEMTGFGASVLEGVLTFGLVYTVYAAGDPRRGL 171 (256)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhhccc----ccccc------ccCcccchHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 99999999999999999999998875421 11111 112244678899999999999999998875532 21
Q ss_pred ---hhhhHHHHHHHHHHHhhhccccccccchhhhhhhhccCCcccccceeehhhhhHHHHHHHHHHHHhhhc
Q psy6903 175 ---LSMILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFNRMQA 243 (249)
Q Consensus 175 ---~~~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~~~~~~~~~~wVYwvgP~~Ga~la~~~~~~~~~ 243 (249)
..++.+++++..+.+.++++||++|||||||+|++..+ .|+++|+||+||++|+++++++|+++..
T Consensus 172 ~~~~~pl~iGl~v~~~~~~~g~~TG~a~NPAR~~gPal~~~---~~~~~wvywvgP~~Ga~l~a~~y~~l~~ 240 (256)
T PLN00167 172 LGAIGPLAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAG---SFKNQAVYWVGPLLGGAVAGLLYDNVVF 240 (256)
T ss_pred CCCcchHHHHHHHHHHHHhccCCCCcccCcccchHHHHhcc---CccCcEEEeHHHHHHHHHHHHHHHHHhC
Confidence 24667788888888899999999999999999999843 4788999999999999999999999754
No 13
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=100.00 E-value=7.9e-37 Score=262.95 Aligned_cols=212 Identities=17% Similarity=0.163 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHh---hh--cch----hHHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHhccCchHHH
Q psy6903 29 QDLLLEVVATAELCASCYELIIV---AD--NWG----VYAYGVALYILTIWWSLNWDDASACPYTHLEDVAERRSNLLIA 99 (249)
Q Consensus 29 ~~~~~EfigT~~l~~~~~~~~~~---~~--~~g----~~~~g~~l~~~~~~~~~~~sGah~NPavTla~~l~g~~~~~~~ 99 (249)
|++++|++||++++......... .+ ..+ ...+|+.+...+.. ...+||+|+|||+|++.++.|++++.+.
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~~-~~~~sga~~NPa~t~~~~~~~~~~~~~~ 79 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVYA-VGHISGGHINPAVTLALAVGGRFPLIRV 79 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCCCCCcHHHHHHHHHHHHHHHHHH-hccCCCCeEcHHHHHHHHHhCCCCHHHH
Confidence 67899999999986543322111 11 111 12456655554444 3468999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc-c-cccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcCCc---
Q psy6903 100 LFKIGAELLGGYIIIKYIQLLWSLEIAHVHVGQAN-T-VYNCQADLQVPVLLGMLVEGVATFLCRFMSRVFAEKVPK--- 174 (249)
Q Consensus 100 ~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~-~-~~~c~~~~~~s~~~~~~~E~~~Tf~l~~~v~~~~~~~~~--- 174 (249)
+.|+++|++|+++|+.+.+.+++.++.+.+.+.+. . ...|.++.+.+..++++.|+++|++++++++...+++++
T Consensus 80 ~~y~~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~~~~ 159 (228)
T cd00333 80 IPYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTDDPNGPPP 159 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhcCCccccccceeccCCCCCccHHHHHHHHHHHHHHHHHHHHHHccccccCCC
Confidence 99999999999999999999988766554433210 0 112346677899999999999999999999887654322
Q ss_pred --hhhhHHHHHHHHHHHhhhccccccccchhhhhhhhccCCcccccceeehhhhhHHHHHHHHHHHHhh
Q psy6903 175 --LSMILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFNRM 241 (249)
Q Consensus 175 --~~~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~~~~~~~~~~wVYwvgP~~Ga~la~~~~~~~ 241 (249)
..++..++.+..+.+.++++||+++||||++++++.++..+.|+++|+||++|++|+++++++||++
T Consensus 160 ~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~~ 228 (228)
T cd00333 160 GGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228 (228)
T ss_pred CCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhccccccceeehhhhHHHHHHHHHHHHHHhC
Confidence 2346677777777888899999999999999999886543468999999999999999999999864
No 14
>PLN00183 putative aquaporin NIP7; Provisional
Probab=100.00 E-value=1.4e-34 Score=253.80 Aligned_cols=201 Identities=17% Similarity=0.157 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhh----hcchh----HHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHhccCchHHHH
Q psy6903 29 QDLLLEVVATAELCASCYELIIVA----DNWGV----YAYGVALYILTIWWSLNWDDASACPYTHLEDVAERRSNLLIAL 100 (249)
Q Consensus 29 ~~~~~EfigT~~l~~~~~~~~~~~----~~~g~----~~~g~~l~~~~~~~~~~~sGah~NPavTla~~l~g~~~~~~~~ 100 (249)
|++++||++||+++.......... .+.+. ..+|+.+...+.. ...+||||+|||+|++.++.|++++.+.+
T Consensus 46 ~~~laEfigTfllvf~~~g~~~~~~~~~~~~~~~~~al~~Gl~V~~~i~~-~g~vSGah~NPAvTla~~l~g~i~~~~~~ 124 (274)
T PLN00183 46 RMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFS-IGSISGAHVNPSVTIAFATFGHFPWSKVP 124 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHHHHHHH-hhccCccccCHHHHHHHHHhcCCCHHHHH
Confidence 688999999999865443221111 11122 1456555554444 34689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcCCc---hhh
Q psy6903 101 FKIGAELLGGYIIIKYIQLLWSLEIAHVHVGQANTVYNCQADLQVPVLLGMLVEGVATFLCRFMSRVFAEKVPK---LSM 177 (249)
Q Consensus 101 ~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~s~~~~~~~E~~~Tf~l~~~v~~~~~~~~~---~~~ 177 (249)
.|+++|++|+++|+.+++.+++... + ..+ +.+..+..++++.|+++||+++++++.+.+++++ ..+
T Consensus 125 ~Yi~aQ~lGa~~ga~l~~~~~~~~~---~-------~~~-~~p~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~~~~~~~~ 193 (274)
T PLN00183 125 LYITAQTVGSVLATYVGVSVYGVKA---D-------LMT-TKPAQGCSSAFWVEFIATFIVMFLAASLTSQPQSLGHLSG 193 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc---c-------ccc-CCCcccHHHHHHHHHHHHHHHHHhhheeeccccCCCCcee
Confidence 9999999999999999988875321 0 011 2233467899999999999999998876443211 235
Q ss_pred hHHHHHHHHHHHhhhccccccccchhhhhhhhccCCcccccceeehhhhhHHHHHHHHHHHHhhhcc
Q psy6903 178 ILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFNRMQAS 244 (249)
Q Consensus 178 ~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~~~~~~~~~~wVYwvgP~~Ga~la~~~~~~~~~~ 244 (249)
+..++.+...++..+++||++|||||+++|++.. ..|+++|+||+||++|+++++++||.+...
T Consensus 194 l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~---~~~~~~wvy~vapilGailaa~l~~~l~~~ 257 (274)
T PLN00183 194 FVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVS---WDFKDIWIYITAPTIGAVAGALMFHLLRLR 257 (274)
T ss_pred hHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhC---CChhheehHHHHHHHHHHHHHHHHHHHhcc
Confidence 6778777777788999999999999999999874 358899999999999999999999998654
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=100.00 E-value=1.9e-34 Score=246.25 Aligned_cols=198 Identities=18% Similarity=0.113 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHhhHHHHHh----h--hcc---hh----HHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHhccCchHHH
Q psy6903 33 LEVVATAELCASCYELIIV----A--DNW---GV----YAYGVALYILTIWWSLNWDDASACPYTHLEDVAERRSNLLIA 99 (249)
Q Consensus 33 ~EfigT~~l~~~~~~~~~~----~--~~~---g~----~~~g~~l~~~~~~~~~~~sGah~NPavTla~~l~g~~~~~~~ 99 (249)
+||+||++++......... . +.. +. ..+|+.+...+... ..+||+|+|||+|++.++.|++++.+.
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~-~~~sg~h~NPavt~~~~l~~~~~~~~~ 79 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCV-GGISGAHLNPAVTIALLLGRRFPLKRV 79 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHH-hcccccccCHHHHHHHHHhCCCCHHHH
Confidence 5999999986543322211 1 111 11 24555555444443 458999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcCCc-----
Q psy6903 100 LFKIGAELLGGYIIIKYIQLLWSLEIAHVHVGQANTVYNCQADLQVPVLLGMLVEGVATFLCRFMSRVFAEKVPK----- 174 (249)
Q Consensus 100 ~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~s~~~~~~~E~~~Tf~l~~~v~~~~~~~~~----- 174 (249)
+.|+++|++|+++|+.+++.+++......... ...++.+.+..++++.|+++|++++++++...+++++
T Consensus 80 ~~y~~aQ~~Ga~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~~~ 153 (216)
T TIGR00861 80 PVYIVAQLIGAILGAALLYGLTSGLFPGNLAV------NGSGAAGVSSGQAFFVEFIGTAILVLVIFATTDPRNRVPRGG 153 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccCCccc------cCCCCCcccHHHHHHHHHHHHHHHHHHHheeecCCCCCCCCc
Confidence 99999999999999999998776433111000 0112345788999999999999999999887553322
Q ss_pred hhhhHHHHHHHHHHHhhhccccccccchhhhhhhhccCCcccccceeehhhhhHHHHHHHHHHH
Q psy6903 175 LSMILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAF 238 (249)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~~~~~~~~~~wVYwvgP~~Ga~la~~~~ 238 (249)
..++..++.+..++...+++||+++||||++++++.+.. ..|+++|+||++|++|+++++++|
T Consensus 154 ~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~~-~~~~~~~vy~vap~~Ga~~a~~~y 216 (216)
T TIGR00861 154 FAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGPALFAGL-AGWGNHWVYWVGPIIGAILGALVY 216 (216)
T ss_pred cHHHHHHHHHHHHHHhCCCCcccccCchhhhhHHHHhcc-ccccceeHHHHHHHHHHHHHHHhC
Confidence 345677888877888899999999999999999997542 358899999999999999999875
No 16
>PLN00184 aquaporin NIP1; Provisional
Probab=99.37 E-value=1.8e-12 Score=115.23 Aligned_cols=104 Identities=20% Similarity=0.192 Sum_probs=80.3
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHHHHHHHhhh--c-CC-c--hhhhH--HHHHHHHHHHhhhccccccccchhhhhhhhc
Q psy6903 139 CQADLQVPVLLGMLVEGVATFLCRFMSRVFAE--K-VP-K--LSMIL--DATFGTLLVVAAFSYSGGYFNPALAGSLKYG 210 (249)
Q Consensus 139 c~~~~~~s~~~~~~~E~~~Tf~l~~~v~~~~~--~-~~-~--~~~~~--~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~ 210 (249)
|..+.+.+..+.++.|+++||+|+++.+.... . +. . .-.+. -++.+...++..+++||+.+|||+++++.+.
T Consensus 45 ~~~~~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~ 124 (296)
T PLN00184 45 SLLSVSVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASC 124 (296)
T ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHh
Confidence 54445667889999999999999999876431 1 11 1 11122 2666777778899999999999999999875
Q ss_pred cCCcccccceeehhhhhHHHHHHHHHHHHhhhcc
Q psy6903 211 CTGHTVTEHLVVYWLSPTIGSLLSVFAFNRMQAS 244 (249)
Q Consensus 211 ~~~~~~~~~~wVYwvgP~~Ga~la~~~~~~~~~~ 244 (249)
+.-.|.+.|+||++|++|+++++++++.+.+.
T Consensus 125 --g~~~~~~~~~YiiaQllGA~lga~~~~~l~~~ 156 (296)
T PLN00184 125 --GRFPLKQVPAYVISQVIGSTLAAATLRLLFGL 156 (296)
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23468899999999999999999988887653
No 17
>PLN00026 aquaporin NIP; Provisional
Probab=99.37 E-value=2e-12 Score=114.86 Aligned_cols=100 Identities=18% Similarity=0.139 Sum_probs=79.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhhcC---Cc---h-h-hhHHHHHHHHHHHhhhccccccccchhhhhhhhccCCc
Q psy6903 143 LQVPVLLGMLVEGVATFLCRFMSRVFAEKV---PK---L-S-MILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCTGH 214 (249)
Q Consensus 143 ~~~s~~~~~~~E~~~Tf~l~~~v~~~~~~~---~~---~-~-~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~~~~ 214 (249)
.+++..+.++.|+++||+|+++.+.....+ .+ . . .+..++.++..++..+++||+.|||||++++.+.. .
T Consensus 66 ~~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g--~ 143 (298)
T PLN00026 66 PDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALR--H 143 (298)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhC--C
Confidence 356788999999999999999987532111 11 1 1 24456777777888999999999999999998763 3
Q ss_pred ccccceeehhhhhHHHHHHHHHHHHhhhcc
Q psy6903 215 TVTEHLVVYWLSPTIGSLLSVFAFNRMQAS 244 (249)
Q Consensus 215 ~~~~~~wVYwvgP~~Ga~la~~~~~~~~~~ 244 (249)
-.|.+.|+||++|++|+++++++++.+.++
T Consensus 144 ~~~~~~~~YiiaQilGAi~aa~~~~~~~~~ 173 (298)
T PLN00026 144 FPWKHVPAYIAAQVSASICASFALKGVFHP 173 (298)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 458899999999999999999998887654
No 18
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.24 E-value=2.3e-11 Score=107.22 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=81.4
Q ss_pred cccccC-CCCcchHHHHHHHHHHHHHHHHHHHHhhhc-CC-----ch--hhhHHHHHHHHHHHhhhccccccccchhhhh
Q psy6903 136 VYNCQA-DLQVPVLLGMLVEGVATFLCRFMSRVFAEK-VP-----KL--SMILDATFGTLLVVAAFSYSGGYFNPALAGS 206 (249)
Q Consensus 136 ~~~c~~-~~~~s~~~~~~~E~~~Tf~l~~~v~~~~~~-~~-----~~--~~~~~~~~~~~~~~~~~~~TG~~~NPAra~~ 206 (249)
...|.| ..+.+.++.++.|+++||+++++.+..... +. .. -.+..++.+...++..+++||+.+||||+++
T Consensus 32 ~~~~~~~~~~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla 111 (274)
T PLN00183 32 LFGCLPYDMDLNPARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIA 111 (274)
T ss_pred hccccCCcCChHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHH
Confidence 445754 346778899999999999999988765322 11 11 1224556666667789999999999999999
Q ss_pred hhhccCCcccccceeehhhhhHHHHHHHHHHHHhhhcc
Q psy6903 207 LKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFNRMQAS 244 (249)
Q Consensus 207 ~~~~~~~~~~~~~~wVYwvgP~~Ga~la~~~~~~~~~~ 244 (249)
+.+.. .-.|...|+||++|++|+++++.+++.+.+.
T Consensus 112 ~~l~g--~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~ 147 (274)
T PLN00183 112 FATFG--HFPWSKVPLYITAQTVGSVLATYVGVSVYGV 147 (274)
T ss_pred HHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 98863 3357889999999999999999998887543
No 19
>PLN00166 aquaporin TIP2; Provisional
Probab=99.24 E-value=2.4e-11 Score=105.89 Aligned_cols=98 Identities=27% Similarity=0.294 Sum_probs=77.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhh---c--C-Cc--h-h----hhHHHHHHHHHHHhhhccccccccchhhhhhhhcc
Q psy6903 145 VPVLLGMLVEGVATFLCRFMSRVFAE---K--V-PK--L-S----MILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGC 211 (249)
Q Consensus 145 ~s~~~~~~~E~~~Tf~l~~~v~~~~~---~--~-~~--~-~----~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~ 211 (249)
.+..++++.|+++||+++++...... + + ++ . . .+..++.+...++..+++||+.+||||++++.+.
T Consensus 15 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l~- 93 (250)
T PLN00166 15 VASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIG- 93 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHh-
Confidence 56789999999999999999876521 1 1 11 1 1 2234566667778899999999999999999985
Q ss_pred CCcccccceeehhhhhHHHHHHHHHHHHhhhcc
Q psy6903 212 TGHTVTEHLVVYWLSPTIGSLLSVFAFNRMQAS 244 (249)
Q Consensus 212 ~~~~~~~~~wVYwvgP~~Ga~la~~~~~~~~~~ 244 (249)
+.-.|...|+||++|++|+++++.+++.+.++
T Consensus 94 -g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~ 125 (250)
T PLN00166 94 -GNITIITGFFYWIAQCLGSIVACLLLVFVTNG 125 (250)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 33457889999999999999999999988654
No 20
>PLN00167 aquaporin TIP5; Provisional
Probab=99.17 E-value=1.4e-10 Score=101.40 Aligned_cols=100 Identities=25% Similarity=0.325 Sum_probs=78.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhh-cC---C--c---h----hhhHHHHHHHHHHHhhhccccccccchhhhhhhh
Q psy6903 143 LQVPVLLGMLVEGVATFLCRFMSRVFAE-KV---P--K---L----SMILDATFGTLLVVAAFSYSGGYFNPALAGSLKY 209 (249)
Q Consensus 143 ~~~s~~~~~~~E~~~Tf~l~~~v~~~~~-~~---~--~---~----~~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~ 209 (249)
...+..+.++.|+++||+++++.+.... ++ + + . -++..++.+...++..+++||+.+|||+++++.+
T Consensus 17 ~~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~ 96 (256)
T PLN00167 17 VTRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAV 96 (256)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHH
Confidence 3556789999999999999988876532 11 1 1 1 1244566777777889999999999999999988
Q ss_pred ccCCcccccceeehhhhhHHHHHHHHHHHHhhhcc
Q psy6903 210 GCTGHTVTEHLVVYWLSPTIGSLLSVFAFNRMQAS 244 (249)
Q Consensus 210 ~~~~~~~~~~~wVYwvgP~~Ga~la~~~~~~~~~~ 244 (249)
. +.-.|...|+||++|++|+++++.+++.+.++
T Consensus 97 ~--g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 129 (256)
T PLN00167 97 G--GHISVPTAMFYWISQMLASVMACLFLKVTTVG 129 (256)
T ss_pred h--CCCcHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5 23458889999999999999999988887544
No 21
>PLN00027 aquaporin TIP; Provisional
Probab=99.13 E-value=1.8e-10 Score=100.61 Aligned_cols=98 Identities=19% Similarity=0.249 Sum_probs=75.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhh---h--cC-C---ch----hhhHHHHHHHHHHHhhhccccccccchhhhhhhhcc
Q psy6903 145 VPVLLGMLVEGVATFLCRFMSRVFA---E--KV-P---KL----SMILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGC 211 (249)
Q Consensus 145 ~s~~~~~~~E~~~Tf~l~~~v~~~~---~--~~-~---~~----~~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~ 211 (249)
.+..+.++.|+++||+++++..... + .+ . .. -++..++.+...++..++.||+.+||||++++.+.
T Consensus 17 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~- 95 (252)
T PLN00027 17 PDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIG- 95 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHh-
Confidence 3467899999999999999887542 1 11 1 11 12344566666677889999999999999999874
Q ss_pred CCcccccceeehhhhhHHHHHHHHHHHHhhhcc
Q psy6903 212 TGHTVTEHLVVYWLSPTIGSLLSVFAFNRMQAS 244 (249)
Q Consensus 212 ~~~~~~~~~wVYwvgP~~Ga~la~~~~~~~~~~ 244 (249)
+.-.|...|+||++|++|+++++.+++.+.++
T Consensus 96 -g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 127 (252)
T PLN00027 96 -GNITLLRGILYWIAQLLGSVVACLLLKFSTGG 127 (252)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33457788999999999999999998877654
No 22
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.11 E-value=2.5e-10 Score=101.00 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=78.0
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHHHHHHHhhhc----CCchh----hhHHHHHHHHHHHhhhccccccccchhhhhhhhc
Q psy6903 139 CQADLQVPVLLGMLVEGVATFLCRFMSRVFAEK----VPKLS----MILDATFGTLLVVAAFSYSGGYFNPALAGSLKYG 210 (249)
Q Consensus 139 c~~~~~~s~~~~~~~E~~~Tf~l~~~v~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~ 210 (249)
|+.+...+..+.++.|+++||+|+++....... +.... .+..++.+...++..++.||+-+|||+++++.+.
T Consensus 33 ~~~p~~~~~~~~~~aEflgTflLvf~g~g~~~~~~~~~~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~ 112 (283)
T PLN00182 33 CTSPSIVCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIF 112 (283)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHH
Confidence 444445677899999999999999988654221 11111 1234566666777889999999999999998876
Q ss_pred cCCcccccceeehhhhhHHHHHHHHHHHHhhhc
Q psy6903 211 CTGHTVTEHLVVYWLSPTIGSLLSVFAFNRMQA 243 (249)
Q Consensus 211 ~~~~~~~~~~wVYwvgP~~Ga~la~~~~~~~~~ 243 (249)
. .-.|...|+||++|++|+++++++.+.+.+
T Consensus 113 ~--~~~~~~~~~Yi~aQ~lGa~~ga~~~~~~~~ 143 (283)
T PLN00182 113 R--RFPWYQVPLYIGAQLTGSLLASLTLRLMFN 143 (283)
T ss_pred c--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 345889999999999999999998877654
No 23
>PRK05420 aquaporin Z; Provisional
Probab=99.06 E-value=4.8e-10 Score=96.73 Aligned_cols=94 Identities=22% Similarity=0.250 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh---hcCC--chh----hhHHHHHHHHHHHhhhccccccccchhhhhhhhccCCccccc
Q psy6903 148 LLGMLVEGVATFLCRFMSRVFA---EKVP--KLS----MILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCTGHTVTE 218 (249)
Q Consensus 148 ~~~~~~E~~~Tf~l~~~v~~~~---~~~~--~~~----~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~~~~~~~~ 218 (249)
.+.++.|+++||+++++..... ++.+ ... .+..++.+...++..++.||+-+|||+++++.+. +.-.|.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~--~~i~~~ 79 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAG--GRFPAK 79 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHh--CCCCHH
Confidence 5789999999999999865532 1111 111 2344566666777889999999999999999886 334688
Q ss_pred ceeehhhhhHHHHHHHHHHHHhhhc
Q psy6903 219 HLVVYWLSPTIGSLLSVFAFNRMQA 243 (249)
Q Consensus 219 ~~wVYwvgP~~Ga~la~~~~~~~~~ 243 (249)
+.|+||++|++|+++++.+.+.+.+
T Consensus 80 ~~~~Y~~aQ~lGa~~ga~l~~~~~~ 104 (231)
T PRK05420 80 ELVPYIIAQVVGGIAAAAVLYLIAS 104 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999976665543
No 24
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.06 E-value=3.2e-10 Score=97.61 Aligned_cols=93 Identities=22% Similarity=0.163 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-cC-Cc---hh----hhHHHHHHHHHHHhhhccccccccchhhhhhhhccCCcccccce
Q psy6903 150 GMLVEGVATFLCRFMSRVFAE-KV-PK---LS----MILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCTGHTVTEHL 220 (249)
Q Consensus 150 ~~~~E~~~Tf~l~~~v~~~~~-~~-~~---~~----~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~~~~~~~~~~ 220 (249)
.++.|+++||+++++...... ++ ++ .+ ++..++.+...++..++.+|+.+|||+++++.... +-.|...
T Consensus 2 ~~~~E~~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~--~~~~~~~ 79 (228)
T cd00333 2 KYLAEFLGTFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGG--RFPLIRV 79 (228)
T ss_pred hhhHHHHHHHHHHHHHhHHHhhccccCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhC--CCCHHHH
Confidence 467899999999998876532 11 11 11 23345666666778899999999999999998863 3468899
Q ss_pred eehhhhhHHHHHHHHHHHHhhhcc
Q psy6903 221 VVYWLSPTIGSLLSVFAFNRMQAS 244 (249)
Q Consensus 221 wVYwvgP~~Ga~la~~~~~~~~~~ 244 (249)
|+||++|++|+++++.+.+.+.++
T Consensus 80 ~~y~~aq~~Ga~~~~~~~~~~~~~ 103 (228)
T cd00333 80 IPYIIAQLLGAILGAALLYGLYYG 103 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999988887655
No 25
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.02 E-value=9.1e-10 Score=98.17 Aligned_cols=99 Identities=16% Similarity=0.108 Sum_probs=74.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhcC---C-chh----hhHHHHHHHHHHHhhhccccccccchhhhhhhhccCCcc
Q psy6903 144 QVPVLLGMLVEGVATFLCRFMSRVFAEKV---P-KLS----MILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCTGHT 215 (249)
Q Consensus 144 ~~s~~~~~~~E~~~Tf~l~~~v~~~~~~~---~-~~~----~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~~~~~ 215 (249)
..+..+.++.|+++||+++++........ + ... .+..++.+...++..++.||+-+|||+++++.+.. .-
T Consensus 46 ~~~~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g--~i 123 (294)
T PTZ00016 46 YRPNVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFG--KF 123 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhc--cC
Confidence 35677999999999999998876543211 1 111 12335555566678889999999999999998763 34
Q ss_pred cccceeehhhhhHHHHHHHHHHHHhhhcc
Q psy6903 216 VTEHLVVYWLSPTIGSLLSVFAFNRMQAS 244 (249)
Q Consensus 216 ~~~~~wVYwvgP~~Ga~la~~~~~~~~~~ 244 (249)
.|...|.||++|++|+++++.+-+.+.++
T Consensus 124 ~~~~~~~YiiaQ~lGa~~ga~ll~~~~~~ 152 (294)
T PTZ00016 124 PWKKLPGYFVAQLLGAFVGAACVYGLYYG 152 (294)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 58889999999999999999976665543
No 26
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=98.95 E-value=1.6e-09 Score=92.49 Aligned_cols=90 Identities=22% Similarity=0.211 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHhhhc---CC---ch---h----hhHHHHHHHHHHHhhhccccccccchhhhhhhhccCCcccccc
Q psy6903 153 VEGVATFLCRFMSRVFAEK---VP---KL---S----MILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCTGHTVTEH 219 (249)
Q Consensus 153 ~E~~~Tf~l~~~v~~~~~~---~~---~~---~----~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~~~~~~~~~ 219 (249)
.|+++||+++++.+..... ++ .. . ++..++.+...++..++.+|+.+|||+++++.... ...|+.
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~--~~~~~~ 78 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGR--RFPLKR 78 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhC--CCCHHH
Confidence 4999999999988765321 11 11 1 23345555566677888999999999999998863 345889
Q ss_pred eeehhhhhHHHHHHHHHHHHhhhcc
Q psy6903 220 LVVYWLSPTIGSLLSVFAFNRMQAS 244 (249)
Q Consensus 220 ~wVYwvgP~~Ga~la~~~~~~~~~~ 244 (249)
.|+||++|++|+++++.+.+.+.++
T Consensus 79 ~~~y~~aQ~~Ga~~~~~~~~~~~~~ 103 (216)
T TIGR00861 79 VPVYIVAQLIGAILGAALLYGLTSG 103 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999988877664
No 27
>KOG0223|consensus
Probab=98.43 E-value=9.8e-07 Score=76.22 Aligned_cols=100 Identities=21% Similarity=0.214 Sum_probs=77.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhcCC---ch-h----hhHHHHHHHHHHHhhhccccccccchhhhhhhhccCCcc
Q psy6903 144 QVPVLLGMLVEGVATFLCRFMSRVFAEKVP---KL-S----MILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCTGHT 215 (249)
Q Consensus 144 ~~s~~~~~~~E~~~Tf~l~~~v~~~~~~~~---~~-~----~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~~~~~ 215 (249)
..+..|..+.|+++|+++++.-.......+ +. . .+.-++.+...+...+..+|+-+|||.+++....++ .
T Consensus 7 ~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~~--i 84 (238)
T KOG0223|consen 7 SVSFLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGGK--I 84 (238)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhCC--C
Confidence 467899999999999999988765433222 11 1 123345555566778899999999999999877654 5
Q ss_pred cccceeehhhhhHHHHHHHHHHHHhhhccc
Q psy6903 216 VTEHLVVYWLSPTIGSLLSVFAFNRMQASK 245 (249)
Q Consensus 216 ~~~~~wVYwvgP~~Ga~la~~~~~~~~~~~ 245 (249)
.+.+.-.||+++++|+++++.+-+.+.|.|
T Consensus 85 sl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~ 114 (238)
T KOG0223|consen 85 SLFRAVAYIVAQLLGAIAGAALLKVVTPGQ 114 (238)
T ss_pred cHHHhHHHHHHHHHHHHHHHHHHheecCcc
Confidence 677888999999999999999999888774
No 28
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=98.36 E-value=1.6e-06 Score=74.35 Aligned_cols=98 Identities=18% Similarity=0.179 Sum_probs=71.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhh----hcCCc------hhhh----HHHHHHHHHHHhhhccccccccchhhhhhhhc
Q psy6903 145 VPVLLGMLVEGVATFLCRFMSRVFA----EKVPK------LSMI----LDATFGTLLVVAAFSYSGGYFNPALAGSLKYG 210 (249)
Q Consensus 145 ~s~~~~~~~E~~~Tf~l~~~v~~~~----~~~~~------~~~~----~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~ 210 (249)
.+..+.++.|+++||++++...... +...+ .+.. ..++.+...++..++.+|+-+|||.+++..+.
T Consensus 5 ~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla~~l~ 84 (227)
T PF00230_consen 5 PSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLAFALT 84 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhheeee
Confidence 4678999999999999997775421 11111 1211 22444445566788899999999999998775
Q ss_pred cCCcccccceeehhhhhHHHHHHHHHHHHhhhcc
Q psy6903 211 CTGHTVTEHLVVYWLSPTIGSLLSVFAFNRMQAS 244 (249)
Q Consensus 211 ~~~~~~~~~~wVYwvgP~~Ga~la~~~~~~~~~~ 244 (249)
. ...|.....||+++++|+++++.+.+.+.++
T Consensus 85 g--~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~ 116 (227)
T PF00230_consen 85 G--RISWKKAIVYIIAQFLGAFLGALLVYALYPD 116 (227)
T ss_dssp T--SSSHHHHHHHHHHHHHHHHHHHHHHHHHSTH
T ss_pred e--eecccceeeEEeeccccccccccchhhcccC
Confidence 3 4567788899999999999999988777666
No 29
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=98.22 E-value=4.9e-06 Score=71.88 Aligned_cols=98 Identities=18% Similarity=0.102 Sum_probs=70.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHh----hhcCC---chh----hhHHHHHHHHHHHhhhccccccccchhhhhhhhccCCc
Q psy6903 146 PVLLGMLVEGVATFLCRFMSRVF----AEKVP---KLS----MILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCTGH 214 (249)
Q Consensus 146 s~~~~~~~E~~~Tf~l~~~v~~~----~~~~~---~~~----~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~~~~ 214 (249)
+..+-++.|+++||+|++.-... .-++. +.+ .+.-++.+...++..+++||+-+|||.+++.....+
T Consensus 3 ~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~-- 80 (241)
T COG0580 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGR-- 80 (241)
T ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCC--
Confidence 34566799999999999765332 11121 111 233355666667889999999999999999887643
Q ss_pred ccccceeehhhhhHHHHHHHHHHHHhhhccc
Q psy6903 215 TVTEHLVVYWLSPTIGSLLSVFAFNRMQASK 245 (249)
Q Consensus 215 ~~~~~~wVYwvgP~~Ga~la~~~~~~~~~~~ 245 (249)
-.|.....||+++++|+++++.+...+...+
T Consensus 81 fp~~~v~~YivAQ~lGA~~ga~l~~~~~~~~ 111 (241)
T COG0580 81 FPWRKVLPYIVAQVLGAFAGAALLYLLYYGK 111 (241)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4578889999999999999997665555543
No 30
>KOG0224|consensus
Probab=97.83 E-value=4e-05 Score=67.57 Aligned_cols=91 Identities=21% Similarity=0.094 Sum_probs=67.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhh----cCCchh-----hhHHHHHHHHHHHhhhccccccccchhhhhhhhccCCcc
Q psy6903 145 VPVLLGMLVEGVATFLCRFMSRVFAE----KVPKLS-----MILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCTGHT 215 (249)
Q Consensus 145 ~s~~~~~~~E~~~Tf~l~~~v~~~~~----~~~~~~-----~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~~~~~ 215 (249)
....+.++.|+++||+|++.=....- .+.+.+ .+.=++.+++-++.++..||+=+|||.+++..... .-
T Consensus 29 ~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g--~~ 106 (316)
T KOG0224|consen 29 NELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILG--RL 106 (316)
T ss_pred HHHHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhc--CC
Confidence 35788999999999999865443211 112211 23345556666788899999999999999987753 34
Q ss_pred cccceeehhhhhHHHHHHHHHH
Q psy6903 216 VTEHLVVYWLSPTIGSLLSVFA 237 (249)
Q Consensus 216 ~~~~~wVYwvgP~~Ga~la~~~ 237 (249)
.|...-+|.+++++||.+++..
T Consensus 107 p~~k~p~Y~~aQ~iGAF~gaa~ 128 (316)
T KOG0224|consen 107 PWKKFPVYVLAQFIGAFLGAAT 128 (316)
T ss_pred ChhhhhHHHHHHHHHHHHHHHH
Confidence 6778889999999999999873
No 31
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=85.47 E-value=18 Score=31.88 Aligned_cols=164 Identities=12% Similarity=0.038 Sum_probs=83.6
Q ss_pred CcHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhhcc-ccccc-cCCCCcchHHHHHHHHHH
Q psy6903 81 CPYTHLEDVAERRSNLLIALFKIGAELLGGYIIIKYIQLLWSLEI-AHVHVGQAN-TVYNC-QADLQVPVLLGMLVEGVA 157 (249)
Q Consensus 81 NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~-~~~~~~~~~-~~~~c-~~~~~~s~~~~~~~E~~~ 157 (249)
|-..+-.-..+|++++++.+--+.-=.+|=++|+.++..+....- ...+.+... ....+ .-..+.+..|.|.--+++
T Consensus 89 n~m~~t~~~~~k~Is~~~ll~~w~~v~lgNliGa~~~a~l~~~~g~~~~~~~~~~~~~~~~a~~K~~~t~~~~F~~GI~c 168 (265)
T COG2116 89 NTMLLTVGVLSKKISWGQLLRNWLVVYLGNLIGALFVALLFHLSGFNLTANGQWGLFVLGVAEHKLHHTFLEAFAKGILC 168 (265)
T ss_pred chhHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccchhHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 666666667889999999998888888888888887776652100 000010000 00000 122345567777777777
Q ss_pred HHHHHHHHHHhhh-cCCchhhhHHHHHHHHHHHhhhccccccccchhhhhhhhccCCcccccc-eeehh----hhhHH-H
Q psy6903 158 TFLCRFMSRVFAE-KVPKLSMILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCTGHTVTEH-LVVYW----LSPTI-G 230 (249)
Q Consensus 158 Tf~l~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~TG~~~NPAra~~~~~~~~~~~~~~~-~wVYw----vgP~~-G 230 (249)
-.+.++.++..-. |+..-|.+..-+-+. .....+++-...|=..-- +.....+...|.+ .|--+ +|=++ |
T Consensus 169 N~lVclAvwm~~~~k~~~~K~~~m~~pv~--~Fv~~GfeH~VANm~~i~-~~~~~~~~~~~~~fi~~Nlipv~lGNivGG 245 (265)
T COG2116 169 NWLVCLAVWMSYSAKDGAAKIFAIILPVM--LFVASGFEHSVANMFMIP-WAAVFSGALTWADFILKNLIPVTLGNIVGG 245 (265)
T ss_pred HHHHHHHHHHHhcccchhhHHHHHHHHHH--HHHHcCCceeeehHHHHH-HHHHcCChhhhHHHHHHHHHHHHHhchhcc
Confidence 7777777765422 332223222222222 223444444444521111 2222222233333 22111 33333 4
Q ss_pred HHHHHHHHHhhhccccc
Q psy6903 231 SLLSVFAFNRMQASKIK 247 (249)
Q Consensus 231 a~la~~~~~~~~~~~~k 247 (249)
+++-++.|.++.+++++
T Consensus 246 ~v~vgl~Y~~~~~~~~~ 262 (265)
T COG2116 246 AVFVGLMYWYLYRKQNR 262 (265)
T ss_pred hhhhhHHHHHhcccccc
Confidence 56677899999888654
No 32
>COG0730 Predicted permeases [General function prediction only]
Probab=54.19 E-value=1.4e+02 Score=25.57 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=25.8
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy6903 87 EDVAERRSNLLIALFKIGAELLGGYIIIKYIQL 119 (249)
Q Consensus 87 a~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~ 119 (249)
..+-.|+.+++........=++|+.+|+.+...
T Consensus 64 ~~~k~~~v~~~~~~~l~~~~~~G~~lG~~l~~~ 96 (258)
T COG0730 64 AYLKRGNVDWKLALILLLGALIGAFLGALLALL 96 (258)
T ss_pred HHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444456779999999999999999999666543
No 33
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=52.18 E-value=1.1e+02 Score=27.31 Aligned_cols=52 Identities=13% Similarity=0.237 Sum_probs=30.2
Q ss_pred HHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy6903 88 DVAERRSNLLIALFKIGAELLGGYIIIKYIQLLWSLEIAHVHVGQANTVYNCQADLQVPVLLGMLVEGVATFLCRFMSR 166 (249)
Q Consensus 88 ~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~s~~~~~~~E~~~Tf~l~~~v~ 166 (249)
..+.++.++.|.+ +||.+|+..+-.++- | ..+.........+.+++++.+.+
T Consensus 25 ~~lk~~~~~~Rll-------~ga~iGa~~~~~~~~------------------p--~~~~~~~~~~k~~~s~lmv~iaf 76 (288)
T TIGR02854 25 RTLKDKVSQWRLL-------LAALIGSLYVLFMFT------------------P--KASFFTSPIAKLLYSFLIIFIAF 76 (288)
T ss_pred HHhhccchHHHHH-------HHHHHHHHHHHHHHh------------------c--cHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566776664 688888887665531 1 12344455566676666666544
No 34
>PRK10805 formate transporter; Provisional
Probab=41.42 E-value=2.6e+02 Score=24.91 Aligned_cols=85 Identities=11% Similarity=-0.008 Sum_probs=44.8
Q ss_pred CcHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHh--hhh--hhhhhhhccccccccCCCCcchHHHHHHHHH
Q psy6903 81 CPYTHLEDVAERRSNLLIALFKIGAELLGGYIIIKYIQLLWS--LEI--AHVHVGQANTVYNCQADLQVPVLLGMLVEGV 156 (249)
Q Consensus 81 NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~--~~~--~~~~~~~~~~~~~c~~~~~~s~~~~~~~E~~ 156 (249)
|-..++ ..+.||.++.+.+-.+.-=.+|=++|+.+.-.+.. ... .+...+.. ...-.....+.+..+.|+-=++
T Consensus 93 n~l~~~-~~~~~~~~~~~~lr~w~iv~~GNliGal~~a~l~~~s~~~~~~~~~~~~~-~~~~a~~K~~~~~~~~f~~gI~ 170 (285)
T PRK10805 93 TVLIVV-AKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWGLN-VLQTADHKVHHTFIEAVCLGIL 170 (285)
T ss_pred hHHHHH-HHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCccHHHHH-HHHHHHHHhcCCHHHHHHHHHH
Confidence 777664 47889999999885554444444444444333221 110 00000000 0000112234567778887788
Q ss_pred HHHHHHHHHHH
Q psy6903 157 ATFLCRFMSRV 167 (249)
Q Consensus 157 ~Tf~l~~~v~~ 167 (249)
|-++.++.++.
T Consensus 171 CN~lVclaV~~ 181 (285)
T PRK10805 171 ANLMVCLAVWM 181 (285)
T ss_pred HHHHHHHHHHH
Confidence 88888887764
No 35
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=39.21 E-value=7 Score=29.85 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHhcc
Q psy6903 76 DDASACPYTHLEDVAERR 93 (249)
Q Consensus 76 sGah~NPavTla~~l~g~ 93 (249)
|+||+||.+.++..+.++
T Consensus 8 t~Ghv~P~lala~~L~~r 25 (139)
T PF03033_consen 8 TRGHVYPFLALARALRRR 25 (139)
T ss_dssp SHHHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHhcc
Confidence 789999999999999864
No 36
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=37.42 E-value=2.8e+02 Score=24.10 Aligned_cols=88 Identities=10% Similarity=0.056 Sum_probs=57.1
Q ss_pred CCcHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhh-hhhhhhccccccccCCCCcchHHHHHHHHH
Q psy6903 80 ACPYTHLEDVAERRSNLLIALFKIGAELLGGYIIIKYIQLLWSL--EIA-HVHVGQANTVYNCQADLQVPVLLGMLVEGV 156 (249)
Q Consensus 80 ~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~--~~~-~~~~~~~~~~~~c~~~~~~s~~~~~~~E~~ 156 (249)
-|-.+...-++.||.++++.+-.+.-=.+|=++|+.+.-.+... ... +...... .........+.+..+.|+-=.+
T Consensus 81 gn~~~~~~~~~~~~~~~~~~l~~w~~v~~gNliG~~~~a~l~~~~~~~~~~~~~~~~-~~~~a~~K~~~~~~~~f~~gI~ 159 (250)
T PF01226_consen 81 GNMMVMTLALLNKRISWKKLLRNWGIVYLGNLIGALLFAYLFAFSGGFMSSPAMGEY-LISVAEHKVSHTFWELFFRGIL 159 (250)
T ss_dssp TTCHHHHHHHCTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGTTTHHHHH-HHHHHHCCSSS-HHHHHHHHHH
T ss_pred cchHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHH-HHHHHHHHhCCCHHHHHHHHHH
Confidence 38998888899999999999888877777777777776665432 111 0011100 0111223345578888888888
Q ss_pred HHHHHHHHHHHh
Q psy6903 157 ATFLCRFMSRVF 168 (249)
Q Consensus 157 ~Tf~l~~~v~~~ 168 (249)
+-++..+.++..
T Consensus 160 cN~lVclav~~~ 171 (250)
T PF01226_consen 160 CNWLVCLAVWLA 171 (250)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888764
No 37
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=35.79 E-value=98 Score=23.27 Aligned_cols=45 Identities=18% Similarity=0.165 Sum_probs=37.9
Q ss_pred CCCCCcHHHHHHHH-hccC-chHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6903 77 DASACPYTHLEDVA-ERRS-NLLIALFKIGAELLGGYIIIKYIQLLW 121 (249)
Q Consensus 77 Gah~NPavTla~~l-~g~~-~~~~~~~yi~aQ~~Ga~~g~~~~~~~~ 121 (249)
|+.++|--.++.=+ .|+. +..|=++|+.+-++||-.|+.+.+.+-
T Consensus 53 GGTfd~~~~iE~g~~~G~~~~~~KQ~l~Il~Af~GA~~g~~lI~wl~ 99 (102)
T PF14034_consen 53 GGTFDTFRSIEKGFFEGELSDIIKQLLYILSAFLGAHTGYILIRWLT 99 (102)
T ss_pred hcCchHHHHHHhHhcCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 77889999999854 5665 678999999999999999999988654
No 38
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=34.21 E-value=4.5e+02 Score=25.66 Aligned_cols=49 Identities=12% Similarity=0.147 Sum_probs=33.6
Q ss_pred ccCCCCCCc---HHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6903 74 NWDDASACP---YTHLEDVAERRSNLLIALFKIGAELLGGYIIIKYIQLLWS 122 (249)
Q Consensus 74 ~~sGah~NP---avTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~ 122 (249)
.+++|+.-. +|+.+.+-...-|......++...++|+.+|..+...++|
T Consensus 361 ~W~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP 412 (650)
T PF04632_consen 361 GWPSGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFVLP 412 (650)
T ss_pred CCChhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 355555433 3333333344557788888999999999999999888876
No 39
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=32.23 E-value=29 Score=22.72 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=12.3
Q ss_pred eeehhhhhHHHHHHHHHHH
Q psy6903 220 LVVYWLSPTIGSLLSVFAF 238 (249)
Q Consensus 220 ~wVYwvgP~~Ga~la~~~~ 238 (249)
.|||.+ ++|-++++...
T Consensus 3 wWvY~v--i~gI~~S~ym~ 19 (52)
T PF14147_consen 3 WWVYFV--IAGIIFSGYMA 19 (52)
T ss_pred chHHHH--HHHHHHHHHHH
Confidence 588876 77777777643
No 40
>PRK09713 focB putative formate transporter; Provisional
Probab=28.99 E-value=4.2e+02 Score=23.59 Aligned_cols=86 Identities=8% Similarity=-0.062 Sum_probs=44.3
Q ss_pred CcHHHHHHHHhccCchHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccCCCCcchHHHHHHHHH
Q psy6903 81 CPYTHLEDVAERRSNLLIALFKI----GAELLGGYIIIKYIQLLWSLEIAHVHVGQANTVYNCQADLQVPVLLGMLVEGV 156 (249)
Q Consensus 81 NPavTla~~l~g~~~~~~~~~yi----~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~s~~~~~~~E~~ 156 (249)
|=... ....+||.++++.+-.+ +.-++|+++-+.+.+..-..+.++.+.+.. ...-.....+.+..+.|+--++
T Consensus 92 N~~~~-~~~~~~~i~~~~~l~~w~iv~~GNlvGal~~A~l~~~s~~~~~~~~~~~~~-~~~ia~~K~~~~~~~~F~~gI~ 169 (282)
T PRK09713 92 SVMTV-MAKSRGVISWRTWLINALLVACGNLAGIACFSLLIWFSGLVMSENAMWGVA-VLHCAEGKMHHTFTESVSLGIM 169 (282)
T ss_pred HHHHH-HHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhHHHH-HHHHHHHHhcCCHHHHHHHHHH
Confidence 55544 33578999999998544 455555555554433210000000000000 0000012234567888888888
Q ss_pred HHHHHHHHHHHh
Q psy6903 157 ATFLCRFMSRVF 168 (249)
Q Consensus 157 ~Tf~l~~~v~~~ 168 (249)
|=++.++.++..
T Consensus 170 CN~lVclaV~~~ 181 (282)
T PRK09713 170 CNLMVCLALWMS 181 (282)
T ss_pred HHHHHHHHHHHH
Confidence 888888888643
No 41
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=27.60 E-value=4.2e+02 Score=26.38 Aligned_cols=34 Identities=18% Similarity=0.067 Sum_probs=20.1
Q ss_pred CCCCcHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6903 78 ASACPYTHLEDVAERRSNLLIALFKIGAELLGGYIIIKYIQLLW 121 (249)
Q Consensus 78 ah~NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~ 121 (249)
..+||....+..... . -+.++|++++.+++-.+.
T Consensus 362 ~g~~pg~~~g~~a~~-~---------~sgflg~Ii~~~l~gyv~ 395 (631)
T PRK09765 362 PALAPGFAAGLAANM-I---------GSGFLGAVVGGLIAGYLM 395 (631)
T ss_pred cCcCchhHHHHHHHh-c---------CCccHHHHHHHHHHHHHH
Confidence 677898766644322 1 256667776666665543
No 42
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=25.77 E-value=59 Score=22.48 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=18.4
Q ss_pred hhhhhHHHHHHHHHHHHhhhccc
Q psy6903 223 YWLSPTIGSLLSVFAFNRMQASK 245 (249)
Q Consensus 223 YwvgP~~Ga~la~~~~~~~~~~~ 245 (249)
|+.|=++|+++++.+--++.|++
T Consensus 1 F~~g~l~Ga~~Ga~~glL~aP~s 23 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFAPKS 23 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCC
Confidence 45677889999988888888864
No 43
>PRK11562 nitrite transporter NirC; Provisional
Probab=25.32 E-value=4.7e+02 Score=23.03 Aligned_cols=86 Identities=12% Similarity=0.063 Sum_probs=51.3
Q ss_pred CcHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhccccccccCCCCcchHHHHHHHHHH
Q psy6903 81 CPYTHLEDVAERRSNLLIALFKIGAELLGGYIIIKYIQLLWSLE---IAHVHVGQANTVYNCQADLQVPVLLGMLVEGVA 157 (249)
Q Consensus 81 NPavTla~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~---~~~~~~~~~~~~~~c~~~~~~s~~~~~~~E~~~ 157 (249)
|-.....-.+.||.++++.+-.+.-=.+|=++|+.+.-.+.... ..+...... ..-.....+.+..+.|+--++|
T Consensus 83 n~~~~~~~~~~~~~s~~~~lr~w~iv~~GNliGa~~~A~l~~~~~~~~~~~~~~~~--~~ia~~K~~~~~~~~f~~gI~C 160 (268)
T PRK11562 83 HTMFLTFGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDTSIV--HSVALAKTTAPAMVLFFKGALC 160 (268)
T ss_pred chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHH--HHHHHHHhcCCHHHHHHHHHHH
Confidence 77776677888999999988777777777777766665543221 111000000 0001122234677777777777
Q ss_pred HHHHHHHHHHh
Q psy6903 158 TFLCRFMSRVF 168 (249)
Q Consensus 158 Tf~l~~~v~~~ 168 (249)
-.+..+.++..
T Consensus 161 NwLVclavw~~ 171 (268)
T PRK11562 161 NWLVCLAIWMA 171 (268)
T ss_pred HHHHHHHHHHH
Confidence 78877777654
No 44
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=22.48 E-value=4.5e+02 Score=21.78 Aligned_cols=27 Identities=22% Similarity=0.080 Sum_probs=22.7
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHH
Q psy6903 92 RRSNLLIALFKIGAELLGGYIIIKYIQ 118 (249)
Q Consensus 92 g~~~~~~~~~yi~aQ~~Ga~~g~~~~~ 118 (249)
|+++++........-+.|+.+|+.+..
T Consensus 59 ~~i~~~~~~~~~~~~~~g~~iG~~l~~ 85 (240)
T PF01925_consen 59 GNIDWKIVLPLIIGALIGVVIGAWLLS 85 (240)
T ss_pred cccchhhhhhhhhHhHHHHHHHHhhhc
Confidence 458999999999999999999877765
No 45
>PRK10621 hypothetical protein; Provisional
Probab=22.43 E-value=5.1e+02 Score=22.33 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=24.3
Q ss_pred HhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy6903 90 AERRSNLLIALFKIGAELLGGYIIIKYIQL 119 (249)
Q Consensus 90 l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~ 119 (249)
-.|+++++......+.=+.|+.+|+.++..
T Consensus 71 ~~~~v~~~~~~~l~~~~l~Ga~~G~~l~~~ 100 (266)
T PRK10621 71 RRKVVNLADQKLNIAMTFVGSMSGALLVQY 100 (266)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346688888888899999999999987654
No 46
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=20.68 E-value=37 Score=30.87 Aligned_cols=17 Identities=6% Similarity=0.059 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy6903 76 DDASACPYTHLEDVAER 92 (249)
Q Consensus 76 sGah~NPavTla~~l~g 92 (249)
.|||+.||+.++..+..
T Consensus 11 TGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 11 SAGHVTPNLAIIPYLKE 27 (352)
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 78999999999999874
Done!