RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6903
(249 letters)
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional.
Length = 256
Score = 29.5 bits (66), Expect = 1.5
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 29/98 (29%)
Query: 152 LVEGVATFLCRFMSRVFAEKVPKLSMILDATFGTLL--------VVAAFSYSGGYFNPA- 202
++EGV TF + V+A P+ ++ G L V+AA +SGG NPA
Sbjct: 148 VLEGVLTFGLVYT--VYAAGDPRRGLLG--AIGPLAIGLVAGANVLAAGPFSGGSMNPAC 203
Query: 203 ------LAGSLKYGCTGHTVTEHLVVYWLSPTIGSLLS 234
+AGS K + VYW+ P +G ++
Sbjct: 204 AFGSAVVAGSFK----------NQAVYWVGPLLGGAVA 231
Score = 28.7 bits (64), Expect = 2.6
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 188 VVAAFSYSGGYFNPALAGSLKYGCTGHTVTEHLVVYWLSPTIGSLLS 234
V A + SGG+ NPA+ + G GH + YW+S + S+++
Sbjct: 75 VYIAANISGGHVNPAVTFGMAVG--GHISVPTAMFYWISQMLASVMA 119
>gnl|CDD|205286 pfam13105, DUF3959, Protein of unknown function (DUF3959). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 260 amino acids in length.
Length = 242
Score = 29.5 bits (66), Expect = 1.6
Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 19/120 (15%)
Query: 7 YFSVFVSGFYILLTGMICYWL-------------RQDLLLEVVATAELCASCYELIIVAD 53
+F+ F S F + IC W+ QD+ + A+C LI
Sbjct: 29 FFTSFGSYFAKKMYSRICSWIAYAPFITLLLVIWHQDITTSSLLANAKIAACIALIPCI- 87
Query: 54 NWGVYAYGVALYILTIWWSLNWDDASACPYTHLEDVAERRSNLLIALFKIGAELLGGYII 113
YG+ +L +W +L WD + ER ++L+ + + L+GG I
Sbjct: 88 -LRFRTYGITFGLLALWGALLWDMKEVQSLV----ILERMTSLMTSEYVYLLLLIGGLIF 142
>gnl|CDD|222690 pfam14336, DUF4392, Domain of unknown function (DUF4392). This
family of proteins is found in bacteria, archaea and
eukaryotes. Proteins in this family are typically
between 282 and 585 amino acids in length. There are two
completely conserved G residues that may be functionally
important.
Length = 278
Score = 28.7 bits (65), Expect = 2.7
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 29 QDLLLEVVATAELCASCYE--LIIVAD--NWGVYAYGVALYILTI 69
+D + + + + AS +IVA NWG YA AL L+
Sbjct: 182 RDAVKKHIPNGDDIASVVAADELIVAGVSNWGAYALAAALSALSG 226
>gnl|CDD|225806 COG3267, ExeA, Type II secretory pathway, component ExeA (predicted
ATPase) [Intracellular trafficking and secretion].
Length = 269
Score = 28.5 bits (64), Expect = 3.3
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 11/59 (18%)
Query: 76 DDASACPYTHLEDVAERRSNLLIALFKIG----------AELLGGYIIIKYIQLLWSLE 124
D + P ++ V E+ L AL K G A L ++ ++LL +LE
Sbjct: 101 ADLESQPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDS-ALEALRLLTNLE 158
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional.
Length = 274
Score = 27.9 bits (62), Expect = 4.9
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 19/118 (16%)
Query: 133 ANTVYNCQADLQV--PVL---LGMLVEGVATFLCRFMSRVFAEKVPKLSMILDATFGT-- 185
+VY +ADL P VE +ATF+ F++ + L + G
Sbjct: 141 GVSVYGVKADLMTTKPAQGCSSAFWVEFIATFIVMFLAASLTSQPQSLGHLSGFVIGIAI 200
Query: 186 -LLVVAAFSYSGGYFNPALAGSLKYGCTGHTVT----EHLVVYWLSPTIGSLLSVFAF 238
L V+ SGG NPA + G + + + +Y +PTIG++ F
Sbjct: 201 GLAVLITGPVSGGSMNPARS-------LGPAIVSWDFKDIWIYITAPTIGAVAGALMF 251
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily. Members of
the MIP superfamily function as membrane channels that
selectively transport water, small neutral molecules,
and ions out of and between cells. The channel proteins
share a common fold: the N-terminal cytosolic portion
followed by six transmembrane helices, which might have
arisen through gene duplication. On the basis of
sequence similarity and functional characteristics, the
superfamily can be subdivided into two major groups:
water-selective channels called aquaporins (AQPs) and
glycerol uptake facilitators (GlpFs). AQPs are found in
all three kingdoms of life, while GlpFs have been
characterized only within microorganisms.
Length = 228
Score = 27.6 bits (62), Expect = 6.2
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 185 TLLVVAAFSYSGGYFNPALAGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFN 239
+ +A +G NPA + + VYW+ P IG++ ++
Sbjct: 172 AAIGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYD 226
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional.
Length = 250
Score = 27.6 bits (61), Expect = 6.7
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 188 VVAAFSYSGGYFNPALAGSLKYGCTGHTVTEHLVVYWLSPTIGS----LLSVFAFN 239
V A + SGG+ NPA+ L G G+ YW++ +GS LL VF N
Sbjct: 71 VSIAANISGGHLNPAVTLGLAIG--GNITIITGFFYWIAQCLGSIVACLLLVFVTN 124
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.140 0.443
Gapped
Lambda K H
0.267 0.0764 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,869,197
Number of extensions: 1235590
Number of successful extensions: 1464
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1461
Number of HSP's successfully gapped: 47
Length of query: 249
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 155
Effective length of database: 6,768,326
Effective search space: 1049090530
Effective search space used: 1049090530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.1 bits)