RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6903
(249 letters)
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C
membrane protein, baculovirus expression system,
glycoprote membrane; 10.00A {Rattus norvegicus}
Length = 340
Score = 33.6 bits (77), Expect = 0.041
Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 22/156 (14%)
Query: 92 RRSNLLIALFKIGAELLGGYIIIKYIQLLWSLEIAHVHVGQANTVYNCQADLQVPVLLGM 151
R+ ++ ++F I A+ LG II L + V TV+ + G+
Sbjct: 125 RKISIAKSVFYITAQCLGA--IIGAGILYLVTPPSVVGGLGVTTVHG-----NLTAGHGL 177
Query: 152 LVEGVATFLCRFMSRVFAEKVPKLSMILDAT---FG---TLLVVAAFSYSGGYFNPA--L 203
LVE + TF + +FA K + + + G + + A +Y+G NPA
Sbjct: 178 LVELIITFQ--LVFTIFASCDDKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSF 235
Query: 204 AGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFN 239
++ G E+ +YW+ P IG++L+ +
Sbjct: 236 GPAVIMG-----NWENHWIYWVGPIIGAVLAGALYE 266
Score = 29.0 bits (65), Expect = 1.4
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 182 TFGTLLVVAAFSY---SGGYFNPALAGSLKYGCTGHTVTEHLVVYWLSPTIGSLL 233
FG + + SGG+ NPA+ ++ CT V Y + +G+++
Sbjct: 93 CFGLSIATMVQCFGHISGGHINPAV--TVAMVCTRKISIAKSVFYITAQCLGAII 145
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.043
Identities = 34/233 (14%), Positives = 75/233 (32%), Gaps = 80/233 (34%)
Query: 16 YILLTGMI-C--YWLRQDLLLEVVATAELCASCYELIIVADNWGVYAYGVALY-----IL 67
+L+ G++ W+ ++C S Y++ D ++ + +L
Sbjct: 152 NVLIDGVLGSGKTWV----------ALDVCLS-YKVQCKMDF-KIFWLNLKNCNSPETVL 199
Query: 68 TIWWSL------NWD---DASACPYTHLEDVAERRSNL---------LIAL--------- 100
+ L NW D S+ + + L L+ L
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 101 --FKIGAELLGGYIIIKYIQL---LWSLEIAHVHVGQANTVY-------------NCQA- 141
F + ++L + ++ Q+ L + H+ + + +C+
Sbjct: 260 NAFNLSCKIL---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 142 DL--QV----PVLLGMLVEGVATFLCR--FMSRVFAEKVPKLSMILDATFGTL 186
DL +V P L ++ E + L V + KL+ I++++ L
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD---KLTTIIESSLNVL 366
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional
crystal, electron diffraction, electron microscopy,
membrane protein; HET: PEE; 2.80A {Rattus norvegicus}
PDB: 2d57_A
Length = 301
Score = 32.0 bits (73), Expect = 0.13
Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 22/156 (14%)
Query: 92 RRSNLLIALFKIGAELLGGYIIIKYIQLLWSLEIAHVHVGQANTVYNCQADLQVPVLLGM 151
R+ ++ ++F I A+ LG II L + V TV+ + G+
Sbjct: 86 RKISIAKSVFYITAQCLGA--IIGAGILYLVTPPSVVGGLGVTTVHG-----NLTAGHGL 138
Query: 152 LVEGVATFLCRFMSRVFAEKVPKLSMILDA---TFG---TLLVVAAFSYSGGYFNPA--L 203
LVE + TF + +FA K + + + G + + A +Y+G NPA
Sbjct: 139 LVELIITFQ--LVFTIFASCDDKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSF 196
Query: 204 AGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFN 239
++ G E+ +YW+ P IG++L+ +
Sbjct: 197 GPAVIMG-----NWENHWIYWVGPIIGAVLAGALYE 227
Score = 28.5 bits (64), Expect = 2.0
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 182 TFGTLLVVAAFSY---SGGYFNPALAGSLKYGCTGHTVTEHLVVYWLSPTIGSLL 233
FG + + SGG+ NPA+ ++ CT V Y + +G+++
Sbjct: 54 CFGLSIATMVQCFGHISGGHINPAV--TVAMVCTRKISIAKSVFYITAQCLGAII 106
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel,
structu genomics, PSI-2, protein structure initiative;
2.01A {Agrobacterium tumefaciens str}
Length = 256
Score = 30.7 bits (70), Expect = 0.33
Identities = 23/154 (14%), Positives = 55/154 (35%), Gaps = 11/154 (7%)
Query: 92 RRSNLLIALFKIGAELLGGYIIIKYIQLLWSLEIAHVHVGQANTVYNCQADLQVPVLLGM 151
R + + A++ G + + ++ + + G A+ Y + ++ +
Sbjct: 102 GRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSAL 161
Query: 152 LVEGVATFLCRFMSRVFAEKVPKLSMILDA-TFG---TLLVVAAFSYSGGYFNPA--LAG 205
L+E + T F+ + ++ G TL+ + + + NPA
Sbjct: 162 LIEIILTAF--FLIVILGSTHGRVPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGQ 219
Query: 206 SLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFN 239
+L G + L ++WL+P +G +
Sbjct: 220 AL---FVGGWALQQLWLFWLAPIVGGAAGAVIWK 250
Score = 29.6 bits (67), Expect = 0.89
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 152 LVEGVATFLCRFM---SRVFAEKVPKLSMILDA---TFGTLLVVAAFSY---SGGYFNPA 202
L E TF F S VFA P+L + FG ++ A++ SGG+FNPA
Sbjct: 34 LAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPA 93
Query: 203 LAGSLKYGCTGHTVTEHLVVYWLSPTIGSLL 233
+ S+ G LV Y ++ G+++
Sbjct: 94 V--SVGLTVAGRFPASSLVPYVIAQVAGAIV 122
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport
protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A
1z98_A 2b5f_A
Length = 304
Score = 30.8 bits (70), Expect = 0.36
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 16/102 (15%)
Query: 150 GMLVEGVATFLCRFMSRVFAEKVPKLSMILDATFG----------TLLVVAAFSYSGGYF 199
+ E + TF+ + VF+ PK S ++ +A +G
Sbjct: 187 ALGAEIIGTFV--LVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGI 244
Query: 200 NPA--LAGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFN 239
NPA ++ + + V + ++W+ P IG+ ++
Sbjct: 245 NPARSFGAAVIFN--SNKVWDDQWIFWVGPFIGAAVAAAYHQ 284
Score = 27.7 bits (62), Expect = 3.3
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 182 TFGTLLVVAAFSY---SGGYFNPALAGSLKYGCTGHTVTEHLVVYWLSPTIGSLL 233
FG ++ V + SGG+ NPA+ + +VY ++ +G++
Sbjct: 103 AFGGMIFVLVYCTAGISGGHINPAV--TFGLFLARKVELLRALVYMIAQCLGAIC 155
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.36
Identities = 49/321 (15%), Positives = 91/321 (28%), Gaps = 119/321 (37%)
Query: 7 YF-SVFVSGFYILLTGMICYW-------LRQDLLLEVVATAELCASCYELIIVADNWGVY 58
Y S+ +S I + + Y L + A + ++ A
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA---TGHSQGLVTA------ 280
Query: 59 AYGVALYILTIWWSLNWDDASACPYTHLEDVAERRSNLLIALFKIGAELLGGY------- 111
+ I + +W+ + LF IG Y
Sbjct: 281 --------VAIAETDSWES--------FFVSV---RKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 112 -IIIKYIQ----------LLWSLEIAHV--HVGQANTVYNCQADLQVPVLLG---MLVEG 155
I+ ++ + +L V +V + N+ +++ ++ G ++V G
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG 381
Query: 156 VATFLCRFM--------------SRV-FAEKVPKLSMILDATFGTLLVVAA-F-SYSGGY 198
L SR+ F+E+ K S F L VA+ F S+
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN----RF---LPVASPFHSH---L 431
Query: 199 FNPAL---------------AGSLK---YG-CTGH-------TVTEHLV-------VYWL 225
PA A ++ Y G +++E +V V W
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE 491
Query: 226 SPTIGSLLSVFAFNRMQASKI 246
+ T + F AS +
Sbjct: 492 TTTQFKATHILDFGPGGASGL 512
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water
transport, X-RAY diffraction, lipid, phosphatidylserine,
PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo
sapiens}
Length = 266
Score = 30.8 bits (70), Expect = 0.39
Identities = 30/156 (19%), Positives = 60/156 (38%), Gaps = 21/156 (13%)
Query: 92 RRSNLLIALFKIGAELLGGYIIIKYIQLLWSLEIAHVHVGQANTVYNCQADLQVPVLLGM 151
+ +LL A F + A+L+G I +L+ + + A N M
Sbjct: 81 NQISLLRAFFYVAAQLVGA--IAGAG-ILYGVAPLNARGNLAVNALN----NNTTQGQAM 133
Query: 152 LVEGVATFLCRFMSRVFAEKVPKLSMILDA---TFG---TLLVVAAFSYSGGYFNPA--L 203
+VE + TF +FA + + + + + G TL + ++G NPA
Sbjct: 134 VVELILTFQ--LALCIFASTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSF 191
Query: 204 AGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFN 239
++ + V+W+ P +G++L+ +
Sbjct: 192 GPAVVMN----RFSPAHWVFWVGPIVGAVLAAILYF 223
Score = 27.7 bits (62), Expect = 3.5
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 151 MLVEGVATFLCRF---MSRVFAEKVPKLSMILDATFGTLLVVAAFSY---SGGYFNPALA 204
+ E +AT + F S + + + FG + A + SGG+ NPA+
Sbjct: 15 VFAEFLATLIFVFFGLGSALKWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAI- 73
Query: 205 GSLKYGCTGHTVTEHLVVYWLSPTIGSLL 233
+L Y + +G++
Sbjct: 74 -TLALLVGNQISLLRAFFYVAAQLVGAIA 101
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P
protein structure initiative, center for structures of
MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli}
PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A*
3nka_A* 3nkc_A*
Length = 234
Score = 30.2 bits (69), Expect = 0.48
Identities = 25/157 (15%), Positives = 52/157 (33%), Gaps = 15/157 (9%)
Query: 92 RRSNLLIALFKIGAELLG---GYIIIKYIQLLWSLEIAHVHVGQANTVYNCQADLQVPVL 148
R + + A+++G ++ I G A+ Y + +L
Sbjct: 77 GRFPAKEVVGYVIAQVVGGIVAAALLYLIASG-KTGFDAAASGFASNGYGEHSPGGYSML 135
Query: 149 LGMLVEGVATFLCRFMSRVFAEKVPKLSMILDA-TFG---TLLVVAAFSYSGGYFNPA-- 202
++VE V + F+ + G TL+ + + + NPA
Sbjct: 136 SALVVELVLSAG--FLLVIHGATDKFAPAGFAPIAIGLACTLIHLISIPVTNTSVNPARS 193
Query: 203 LAGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFN 239
A ++ G E L +W+ P +G ++ +
Sbjct: 194 TAVAI---FQGGWALEQLWFFWVVPIVGGIIGGLIYR 227
Score = 29.1 bits (66), Expect = 1.1
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 152 LVEGVATFLCRFM---SRVFAEKVPKLSMILDA---TFGTLLVVAAFSY---SGGYFNPA 202
E TF F S V A P+L + FG ++ AF+ SGG+FNPA
Sbjct: 9 AAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPA 68
Query: 203 LAGSLKYGCTGHTVTEHLVVYWLSPTIGSLL 233
+ ++ G + +V Y ++ +G ++
Sbjct: 69 V--TIGLWAGGRFPAKEVVGYVIAQVVGGIV 97
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0
junctions, AQP0, lens MIP, lipid-protein interac
membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries}
SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Length = 263
Score = 30.4 bits (69), Expect = 0.49
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 22/156 (14%)
Query: 92 RRSNLLIALFKIGAELLGGYIIIKYIQLLWSLEIAHVHVGQANTVYNCQADLQVPVLLGM 151
+ +LL A+ + A+LLG + L A NT++ + Q
Sbjct: 79 SQMSLLRAICYVVAQLLGA--VAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQ-----AT 131
Query: 152 LVEGVATFLCRFMSRVFAEKVPKLSMILDA---TFG---TLLVVAAFSYSGGYFNPA--L 203
+VE T F+ +FA + + L + G TL + Y+G NPA
Sbjct: 132 IVEIFLTLQ--FVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSF 189
Query: 204 AGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFN 239
A ++ + VYW+ P IG+ L ++
Sbjct: 190 APAILTR-----NFTNHWVYWVGPVIGAGLGSLLYD 220
Score = 28.1 bits (63), Expect = 2.8
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 151 MLVEGVATFLCRF---MSRVFAEKVPKLSMILDATFGTLLVVAAFSY---SGGYFNPALA 204
+ E AT F + + P + + FG L + SG + NPA+
Sbjct: 13 IFAEFFATLFYVFFGLGASLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAV- 71
Query: 205 GSLKYGCTGHTVTEHLVVYWLSPTIGSLL 233
+ + + Y ++ +G++
Sbjct: 72 -TFAFLVGSQMSLLRAICYVVAQLLGAVA 99
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein
structure initiative, center for structures of MEMB
proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo
sapiens}
Length = 223
Score = 30.3 bits (69), Expect = 0.52
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 22/156 (14%)
Query: 92 RRSNLLIALFKIGAELLGGYIIIKYIQLLWSLEIAHVHVGQANTVYNCQADLQVPVLLGM 151
R+ ++ ++F I A+ LG II +L+ + V G T+ + + G+
Sbjct: 77 RKISIAKSVFYIAAQCLGA--IIGAG-ILYLVTPPSVVGGLGVTMVH----GNLTAGHGL 129
Query: 152 LVEGVATFLCRFMSRVFAEKVPKLSMILDA---TFG---TLLVVAAFSYSGGYFNPA--L 203
LVE + TF + +FA K + + + G + + A +Y+G NPA
Sbjct: 130 LVELIITFQ--LVFTIFASCDSKRTDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSF 187
Query: 204 AGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFN 239
++ G E+ +YW+ P IG++L+ +
Sbjct: 188 GPAVIMG-----NWENHWIYWVGPIIGAVLAGGLYE 218
Score = 27.2 bits (61), Expect = 4.0
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 182 TFGTLLVVAAFSY---SGGYFNPALAGSLKYGCTGHTVTEHLVVYWLSPTIGSLL 233
FG + + SGG+ NPA+ ++ CT V Y + +G+++
Sbjct: 45 CFGLSIATMVQCFGHISGGHINPAV--TVAMVCTRKISIAKSVFYIAAQCLGAII 97
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane
protein; HET: BOG; 1.15A {Komagataella pastoris} PDB:
2w1p_A*
Length = 279
Score = 30.0 bits (68), Expect = 0.64
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 13/103 (12%)
Query: 150 GMLVEGVATFLCRFMSRVFAEKVPKLSMILDATFG-----TLLVVAAFSYSGGYFNPA-- 202
G+ +E T + V V K A F + + Y+G NPA
Sbjct: 171 GLFLEAFGTAI--LCLTVLMLAVEKHRATWFAPFVIGIALLIAHLICIYYTGAGLNPARS 228
Query: 203 LAGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFNRMQASK 245
++ + + +YWL P +G+ L+ + +
Sbjct: 229 FGPAVAAR----SFPNYHWIYWLGPILGAFLAYSIWQMWKWLN 267
Score = 29.3 bits (66), Expect = 1.2
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 182 TFGTLLVVAAFSY---SGGYFNPALAGSLKYGCTGHTVTEHLVVYWLSPTIGSLL 233
FG ++V F SGG NPA+ +L ++ + + +
Sbjct: 91 GFGFGVMVGVFITYRVSGGNLNPAV--TLALVLARAIPPFRGILMAFTQIVAGMA 143
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane
helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1
PDB: 1h6i_A 1fqy_A 1ih5_A
Length = 271
Score = 29.7 bits (67), Expect = 0.72
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 15/98 (15%)
Query: 150 GMLVEGVATFLCRFMSRVFA---EKVPKLSMILDATFG---TLLVVAAFSYSGGYFNPA- 202
G+ +E + T + V A + L G L + A Y+G NPA
Sbjct: 140 GLGIEIIGTLQ--LVLCVLATTDRRRRDLGGSGPLAIGFSVALGHLLAIDYTGCGINPAR 197
Query: 203 -LAGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFN 239
S+ + ++W+ P IG+ L+V ++
Sbjct: 198 SFGSSVITH-----NFQDHWIFWVGPFIGAALAVLIYD 230
Score = 27.7 bits (62), Expect = 3.6
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 182 TFGTLLVVAAFSY---SGGYFNPALAGSLKYGCTGHTVTEHLVVYWLSPTIGSLL 233
FG + A S SG + NPA+ +L + ++Y ++ +G+++
Sbjct: 57 AFGLSIATLAQSVGHISGAHLNPAV--TLGLLLSCQISVLRAIMYIIAQCVGAIV 109
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.140 0.443
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,930,227
Number of extensions: 231750
Number of successful extensions: 441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 37
Length of query: 249
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 158
Effective length of database: 4,160,982
Effective search space: 657435156
Effective search space used: 657435156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.4 bits)