RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6903
         (249 letters)



>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
          Length = 231

 Score = 44.4 bits (104), Expect = 4e-06
 Identities = 29/191 (15%), Positives = 67/191 (35%), Gaps = 6/191 (3%)

Query: 59  AYGVALYILTIWWSLNWDDASACPYTHLEDVAERRSNLLIALFKIGAELLGGYIIIKYIQ 118
           A+G+ +  +  +   +       P   +   A  R      +  + A+++GG +    + 
Sbjct: 42  AFGLTVLTM-AFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLY 100

Query: 119 LLWSLEIAH--VHVGQANTVYNCQADLQVPVLLGMLVEGVATFLCRF--MSRVFAEKVPK 174
           L+ S +        G A+  Y   +     +L  ++VE V +                  
Sbjct: 101 LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG 160

Query: 175 LSMILDATFGTLLVVAAFSYSGGYFNPALAGSLKYGCTGHTVTEHLVVYWLSPTIGSLLS 234
            + I      TL+ + +   +    NPA + ++     G    E L  +W+ P +G ++ 
Sbjct: 161 FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWA-LEQLWFFWVVPIVGGIIG 219

Query: 235 VFAFNRMQASK 245
              +  +   +
Sbjct: 220 GLIYRTLLEKR 230


>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF
           {Escherichia coli [TaxId: 562]}
          Length = 254

 Score = 28.6 bits (63), Expect = 0.57
 Identities = 35/249 (14%), Positives = 77/249 (30%), Gaps = 35/249 (14%)

Query: 27  LRQDLLLEVVATAEL----CASCYELIIVADNWGVY----AYGVALYILTIWWSLNWDDA 78
           L+   + E + T  L          L +   ++G +     +G+ + +  I+ +     A
Sbjct: 2   LKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMA-IYLTAGVSGA 60

Query: 79  SACPYTHLEDVAERRSNLLIALFKIGAELLGGYIIIKYIQLLWSLEIAHVHVGQANT--- 135
              P   +        +    +  I +++ G +     +  L+                 
Sbjct: 61  HLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGS 120

Query: 136 --------VYNCQADLQVPVLLGMLVEGVATFLCRFMSRVFAEKVPKLSMILDATFGTLL 187
                    ++   +  +  +    VE V T +   +     +    +     A     L
Sbjct: 121 VESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGL 180

Query: 188 VVAAFSYSGGY-----FNPA----------LAGSLKYGCTGHTVTEHLVVYWLSPTIGSL 232
           ++A    S G       NPA          LAG      TG     + +V    P +G++
Sbjct: 181 LIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAI 240

Query: 233 LSVFAFNRM 241
           +  FA+ ++
Sbjct: 241 VGAFAYRKL 249


>d1vf8a2 d.26.3.1 (A:246-315) Chitinase-like lectin ym1 {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 70

 Score = 26.3 bits (58), Expect = 0.83
 Identities = 8/33 (24%), Positives = 12/33 (36%)

Query: 56 GVYAYGVALYILTIWWSLNWDDASACPYTHLED 88
          G+ AY      L    +  WD     PY +  +
Sbjct: 33 GLLAYYEVCTFLNEGATEVWDAPQEVPYAYQGN 65


>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 234

 Score = 26.2 bits (57), Expect = 3.2
 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 7/107 (6%)

Query: 145 VPVLLGMLVEGVATF---LCRFMSRVFAEKVPKLSMILDATFG-TLLVVAAFSYSGGYFN 200
           V V    +VE   T    LC F +          S+ L   F  TL  +    Y+G   N
Sbjct: 120 VSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMN 179

Query: 201 PALAGSLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFNRMQASKIK 247
           PA + +        T   +  VYW+ P IG+ L    ++ +   ++K
Sbjct: 180 PARSFAPAILTRNFT---NHWVYWVGPVIGAGLGSLLYDFLLFPRLK 223


>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
          Length = 249

 Score = 26.3 bits (57), Expect = 3.5
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 150 GMLVEGVATFLCRFMSRVFAEK----VPKLSMILDATFGTLLVVAAFSYSGGYFNPALAG 205
           G+ +E + T           ++    +     +       L  + A  Y+G   NPA   
Sbjct: 140 GLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGFSVALGHLLAIDYTGCGINPAR-- 197

Query: 206 SLKYGCTGHTVTEHLVVYWLSPTIGSLLSVFAFN 239
           S       H   +H + +W+ P IG+ L+V  ++
Sbjct: 198 SFGSSVITHNFQDHWI-FWVGPFIGAALAVLIYD 230


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.443 

Gapped
Lambda     K      H
   0.267   0.0525    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 949,117
Number of extensions: 42046
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 9
Length of query: 249
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,268,006
Effective search space: 210488996
Effective search space used: 210488996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.3 bits)