BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy691
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 32/54 (59%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
+AC C KSFS L H + H+ K Y C CGK F+D DL RH RTHTG+
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE 75
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
+ C C KSFS ++ L RH + H+ K Y C CGK F+ +L+ H RTHTG+
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGE 103
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 45 PEKVESTTGRKDNTR----------FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCG 94
PE +S + +KD TR + C C KSFS + L H + H+ K Y C CG
Sbjct: 53 PECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECG 112
Query: 95 KGFNDTFDLKRHTRTHTGK 113
K F+ L+ H RTHTG+
Sbjct: 113 KSFSQLAHLRAHQRTHTGE 131
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
+AC C KSFS L H + H+ K Y C CGK F+ +L H RTHTG+
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGE 159
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
+ C C KSFS + L+ H + H+ K Y C CGK F+ L H RTHTGK
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Score = 32.0 bits (71), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
K Y C CGK F+ + L H RTHTG+
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGE 47
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
+ C C KSFS L +H + H+ K Y C CGK F+ + DL++H RTHTG+
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGE 58
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
+ C C KSFS L +H + H+ K Y C CGK F+ + L RH RTH K
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNK 86
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
K Y C CGK F+ + +L++H RTHTG+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGE 30
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
F C +C KSF L+ H+ HSD + Y C +CGK F+ D+K+HT HTG+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE 55
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 56 DNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
D + C C K F + + +H H+ K + C CGK F+ + +L H+R HTG
Sbjct: 26 DTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 54 RKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+++ R+ C C KSFS L++H + H+ K Y C CGK F L H R HTG
Sbjct: 13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 84 DVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
+ +RY C CGK F+ + DL +H RTHTG+
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGE 44
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
+ C C SF + L H H+ K Y C CG FN +LK HTR H+G+
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHT 111
C +C K FS + L HM+CH+ VK Y C C D+ L +H R H+
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS 60
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ C C + + LN+H++ HSD + + C C ++ L H R+HTG
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTG 89
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 90 CTFCGKGFNDTFDLKRHTRTHTG 112
C CGK F+ LK H R HTG
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTG 33
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHT 111
+ C C K+FS +L +H + H+ K Y C CGK F+ L H R HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
K Y C CGK F+ + L +H R HTG+
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGE 40
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTH 110
TG+K F C +C ++FS Q LN H++ H+ K + C CG+ F RHT+ H
Sbjct: 30 TGQKP---FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
+AC + C + FS + L+ H++ H+ K + C C + F+ L H RTHTG+
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTG 112
C C K+F L RH H+ K + CTF CGK F+ F+L+ H R HTG
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 89
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 65 CSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHT 111
C K FSL L H++ H+ + Y+C F C K F + +LK H TH
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 65 CSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
C+K F + +H+ H + ++C CGK F ++ LKRH HTG+
Sbjct: 13 CTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGE 60
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 65 CSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
C + FS L RH + H+ VK + C C + F+ + LK HTRTHTG+
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGE 92
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 65 CSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTG 112
C+K + L H + H+ K Y C F C + F+ + LKRH R HTG
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTH 110
F C C + FS L H + H+ K + C + C K F + +L RH H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTH 110
F C +C ++FS L H++ H+ K + C CG+ F + + KRHT+ H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
+AC + C + FS L RH++ H+ K + C C + F+ + L H RTHTG+
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTH 110
TG+K F C +C ++FS LN+H++ H+ K + C CG+ F RHT+ H
Sbjct: 30 TGQKP---FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
+AC + C + FS + L+ H++ H+ K + C C + F+ L +H RTHTG+
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTH 110
F C +C ++FS L H++ H+ K + C CG+ F + + KRHT+ H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
+AC + C + FS L RH++ H+ K + C C + F+ + L H RTHTG+
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTH 110
F C +C ++FS L H++ H+ K + C CG+ F + + KRHT+ H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
+AC + C + FS L RH++ H+ K + C C + F+ + L H RTHTG+
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTH 110
F C +C ++FS L H++ H+ K + C CG+ F + + KRHT+ H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
+AC + C + FS L RH++ H+ K + C C + F+ + L H RTHTG+
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTH 110
F C +C ++FS L H++ H+ K + C CG+ F + + KRHT+ H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
+AC + C + FS L RH++ H+ K + C C + F+ + L H RTHTG+
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHT-RTHTG 112
F C +C+++F+ Q L RH + H++ K Y C C + F L RH + H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 88 YLCTFCGKGFNDTFDLKRHTRTHTGK 113
++C C + F LKRH R+HT +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNE 28
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTH 110
F C +C ++FS L H++ H+ K + C CG+ F + + KRHT+ H
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
+AC + C + FS L RH++ H+ K + C C + F+ + L H RTHTG+
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTH 110
F C +C ++FS L H++ H+ K + C CG+ F + + KRHT+ H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
+AC + C + FS L RH++ H+ K + C C + F+ + L H RTHTG+
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 27/60 (45%)
Query: 53 GRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
G ++ AC +C K F LNRH HS K Y C CG F + H R+H G
Sbjct: 1 GSSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCH--SDVKRYLCTFCGKGFNDTFDLKRHTRT-HTG 112
++C +C F + ++ H++ H S K Y+C CGKGF+ L H + H+G
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 90 CTFCGKGFNDTFDLKRHTRTHTGK 113
C CGK F D + L RH +H+G+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGE 33
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 51 TTGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTH 110
++G + + C C KSF+ + +RHM H ++ Y C CGK F L H + H
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 111 TG 112
TG
Sbjct: 61 TG 62
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRH 106
+ C +C K F ++ L HMK H+ +K Y C C K F RH
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH 84
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
F C+ C K++ L+RH + H + C CGK F D ++ RH + H K
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRH 106
F C +C ++FS L H++ H+ K + C CG+ F + + KRH
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 85 VKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
+K + C C + F+ + L H RTHTG+
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGE 29
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 67 KSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTGK 113
KSF + L H++ H+ K + C F CGK F + +LK H RTHTG+
Sbjct: 70 KSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGE 118
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHT 111
F C C K F+ L H + H+ K + C F C + F ++ D K+H HT
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 65 CSKSFSLQRLLNRHMKCHSDVKRYLCTFCG 94
C KSF+ ++ L HMK HSD + Y+C F G
Sbjct: 46 CGKSFNFKKHLKEHMKLHSDTRDYICEFSG 75
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 65 CSKSFSLQRLLNRHMKC-HSDVKRYLCT--FCGKGFNDTFDLKRHTRTHT 111
C + FS ++ LN H K H K + C CGK FN LK H + H+
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHS 64
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHT 111
+AC + C + FS L RH++ H+ K + C C + F+ + L H RTHT
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 56 DNTRFACHL--CSKS---FSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTR 108
+ F CH CS+ F Q +L HM+ H+ K + CTF C K ++ +LK H R
Sbjct: 31 ERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLR 90
Query: 109 THTGK 113
+HTG+
Sbjct: 91 SHTGE 95
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 65 CSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRH-TRTHTGK 113
C KS+S L H++ H+ K Y+C C K F++ D +H RTH+ +
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 126
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y+C +CGK F + +L RH R HTG+ G
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG 46
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVK 86
+ C C K+F L L RH + H+ K
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEK 39
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGK F+ T L RH R HTG+ G
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSSG 46
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGK F+ T L RH R HTG+ G
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG 46
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGKG+N F+L H + HTG+ G
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG 46
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
+ Y+CT CGK F D +L +H + HTG+ G
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG 46
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 56 DNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTH 110
D + C +C K+F Q L H HS K + C CGKGF + L H H
Sbjct: 42 DERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 24/57 (42%)
Query: 55 KDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHT 111
K F C C + F+ L H + H+D + Y C C K F L+ H H+
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS 69
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 59 RFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRT 109
++ C C +L +H++ H+DV+ Y CT+C F +L +H ++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 65 CSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTG 112
C K+++ L H++ H+ K Y C + CG F + +L RH R HTG
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 63
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 33.1 bits (74), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
+ C +C +S+ L RH HS K+Y C +C K F +H HTG+
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGE 76
Score = 32.3 bits (72), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 59 RFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRT 109
++ C C K F L +H H+ +RY C CGK F + + H ++
Sbjct: 50 KYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKS 100
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGK F+ T L +H R HTG+ G
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG 46
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 33.1 bits (74), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 65 CSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTG 112
C K+++ L H++ H+ K Y C + CG F + +L RH R HTG
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 62
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y+C CGK F L RH R HTG+ G
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSSG 46
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVK 86
+ C+ C KSF + LNRH + H+ K
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEK 39
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 85 VKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
+K Y+C CGK F L HTRTHTG+
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
K Y C CGKG+ DL H R HTG+
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGE 38
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 32.7 bits (73), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVK----RYLCTFCGKGFNDTFDLKRHT 107
+AC C K+F ++LL+ H K + D ++C+ CGK F + RH
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 32.7 bits (73), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 65 CSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTG 112
C+K ++ L H++ H+ K Y CT+ C F + +L RH R HTG
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 65 CSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTH 110
C F+ L RH + H+ K + C C + F+ + L H + H
Sbjct: 53 CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C+ CGK F+ L H R H+GK G
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG 46
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGKG+N +L H R H G+ G
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG 46
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 0.097, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 83 SDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
S VK Y C+ CGK F L H RTHTG+
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGE 36
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Query: 88 YLCT--FCGKGFNDTFDLKRHTRTHTGK 113
++CT +CGK F + +L+RH RTHTG+
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGE 30
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 32.0 bits (71), Expect = 0.099, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 85 VKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
+K Y+C C + F D L+RH R HTG+
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGE 29
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
KRY C CGK F+ L +H + HTG+ G
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG 46
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 59 RFACHLCSKSFSLQRLLNRHMKCHSDVK 86
R+ C+ C K FS L++H K H+ K
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEK 39
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGK F +L +H R HTG+ G
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSSG 46
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHT-RTHTG 112
F C +C ++F + L HM H+ Y C+ C + F DL+ H + H+G
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGK F D +H R HTG+ G
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG 46
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 56 DNTRFACHLCS-----KSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTR 108
D++R H+CS K++ L H + H+ K + C++ C + F + +L RH R
Sbjct: 11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Query: 109 TH 110
TH
Sbjct: 71 TH 72
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 83 SDVKRYLCTF--CGKGFNDTFDLKRHTRTHTGK 113
S ++ ++C+ CGK + + LK HTRTHTG+
Sbjct: 13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGE 45
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K + C CGK F+D L +H R HTG+ G
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG 46
>pdb|2AB3|A Chain A, Solution Structures And Characterization Of Hiv Rre Iib
Rna Targeting Zinc Finger Proteins
Length = 29
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 88 YLCTF--CGKGFNDTFDLKRHTRTHTG 112
Y+C F CG+ FND L RH + HTG
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHTG 29
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHS 83
+ CH C +SF+ +R LNRH K H+
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHT 28
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
K Y C C K FN +L H RTHTG+
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 88 YLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
Y C CGK F+ + L H RTH G+ G
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG 46
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGK F+ L H RTHTG+ G
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG 46
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVK 86
+ C+ C K+FS + +L+ H + H+ K
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEK 39
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C C K F L +H +THTG+ G
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSSG 46
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVK 86
+ C +CSK+F+ + L +H K H+ K
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEK 39
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
K+ C CGK F D + L RH +H+G+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGE 38
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 51 TTGRKDNTR--FACHLCSKSFSLQRLLNRHMKCHSDVKRY 88
++G TR AC +C K F LNRH HS K Y
Sbjct: 2 SSGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 90 CTFCGKGFNDTFDLKRHTRTHTGK 113
C++CGK F + L H RTHTG+
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGE 30
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTH 110
C C K F LN H++ H+ K Y C FC L+ H H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.8 bits (68), Expect = 0.24, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 83 SDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
S K Y CT CGK F L H RTHTG+
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 30.8 bits (68), Expect = 0.24, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 88 YLCTFCGKGFNDTFDLKRHTRTHTGK 113
Y C+ CGK FN L H RTH G+
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGK F+ + L+ H R HTG+ G
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSSG 46
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 85 VKRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
VK Y+C CGK F+ L H HTG+ G
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG 46
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGK F D +L H + HTG+ G
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG 46
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGK F L+ H R HTG+ G
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSSG 46
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K + C CGK +N L +H R HTG+ G
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG 46
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 16/36 (44%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGK F L RH R HTG+ G
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG 46
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 14/27 (51%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTG 112
K Y C CGK F L RH R HTG
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTG 37
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K + C+ C K FN +L H RTHTG+ G
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSSG 46
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHT 111
K Y C+ CGK F+ ++ L +H THT
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHT 36
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C+ CGK F L H + HTG+ G
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG 46
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 30.0 bits (66), Expect = 0.41, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 83 SDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
S K Y+C CGK F + L H R HTG+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C+ CGK F+ L H RTH+G+ G
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG 46
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVK 86
+ C C K+FS + L HM+ HS K
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEK 39
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K + C CGK F+ + L H R HTG+ G
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKPSGPSSG 46
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVK 86
F C C KSFS+ L H + H+ K
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEK 39
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVK 86
F C +C+++F+ Q L RH + H++ K
Sbjct: 3 FVCEVCTRAFARQEYLKRHYRSHTNEK 29
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 88 YLCTFCGKGFNDTFDLKRHTRTHTGK 113
++C C + F LKRH R+HT +
Sbjct: 3 FVCEVCTRAFARQEYLKRHYRSHTNE 28
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVK 86
F C +C+++F+ Q L RH + H++ K
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNEK 29
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 88 YLCTFCGKGFNDTFDLKRHTRTHTGK 113
++C C + F LKRH R+HT +
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNE 28
>pdb|3TY7|A Chain A, Crystal Structure Of Aldehyde Dehydrogenase Family Protein
From Staphylococcus Aureus
pdb|3TY7|B Chain B, Crystal Structure Of Aldehyde Dehydrogenase Family Protein
From Staphylococcus Aureus
Length = 478
Score = 29.3 bits (64), Expect = 0.64, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 4 LGLPKGVTLEFVNG-GHGVKNPLANH 28
+G+PKGV VNG G GV NPL+ H
Sbjct: 192 VGVPKGV-FNLVNGDGAGVGNPLSEH 216
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K + C CGK F L H R HTG+ G
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG 46
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 29.3 bits (64), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 85 VKRYLCTFCGKGFNDTFDLKRHTRTH 110
+K Y C +CG+ F+D RH TH
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHLETH 26
>pdb|2AB7|A Chain A, Solution Structures And Characterization Of Hiv Rre Iib
Rna Targeting Zinc Finger Proteins
Length = 29
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 88 YLCTF--CGKGFNDTFDLKRHTRTHT 111
Y+C F CG+ FND L RH + HT
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHT 28
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHS 83
+ CH C +SF+ +R LNRH K H+
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHT 28
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 88 YLCTFCGKGFNDTFDLKRHTRTHTGK 113
Y C CGK F F L RH + HT K
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTRK 38
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 90 CTFCGKGFNDTFDLKRHTRTHTGK 113
C CGK F + +LKRH R H+G+
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGE 28
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 83 SDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
S K Y+C CGK F L H R HTG+
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 28.9 bits (63), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 59 RFACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTGK 113
R+ C C +++ L H+ H+ K + C C KGF L RH+ THTG+
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTG 112
K Y C+ CGK F+ L H R HTG
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTG 37
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 53 GRKDNTRFACHLCSKSFSLQRLLNRHMKCHSD---VKRYLCTFCGKGFNDTFDLKRH-TR 108
G ++ C +C + + LN H + H++ R+ C FCGK F + H ++
Sbjct: 1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Query: 109 TH 110
+H
Sbjct: 61 SH 62
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C+ CGK F L H R HTG+ G
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSSG 46
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y+C CGK F +L +H + HT + G
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG 46
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 13/27 (48%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTG 112
K Y C CGK F L H R HTG
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTG 37
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGK F L H R HTG+ G
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG 46
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
K + CT CGK F +L H R HTG+
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGE 38
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 83 SDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S K Y C CGK F+ L H R HTG
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTG 35
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRH 106
C +C +SF+ + RH++ + + C +C F + L RH
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGK F + L +H R HT + G
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSSG 46
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSD 84
++C++C K+F L LN+H++ H+
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQ 37
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGK F+ L H HTGK G
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSSG 46
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 28.5 bits (62), Expect = 1.2, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTG 112
K Y C CGK F+ L H R HTG
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTG 36
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 1.2, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
K Y C+ CGK F L H RTH+G+
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 85 VKRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K + C CG+GF L +H R HTG+ G
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG 46
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVK 86
CH C + F+L+ LN+H + H+ K
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEK 39
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 83 SDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
S K Y+CT CGK F H R HTG+
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|1ZNM|A Chain A, A Zinc Finger With An Artificial Beta-Turn, Original
Sequence Taken From The Third Zinc Finger Domain Of The
Human Transcriptional Repressor Protein Yy1 (Ying And
Yang 1, A Delta Transcription Factor), Nmr, 34
Structures
Length = 28
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 88 YLCTF--CGKGFNDTFDLKRHTRTHTG 112
+ CTF CGK F+ F+LK H + HTG
Sbjct: 2 FQCTFXCCGKRFSLDFNLKTHVKIHTG 28
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVK 86
F C +C+++F+ Q L RH + H++ K
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 88 YLCTFCGKGFNDTFDLKRHTRTHTGK 113
++C C + F LKRH R+HT +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNE 28
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
+ Y C+ CGK F L H R HTG+ G
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSSG 46
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K + C CGK F L H R HTG+ G
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG 46
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGK F L H TH+G+ G
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSSG 46
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 85 VKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
++ Y C+ CGK F+ ++ H R HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTG 112
+ CH C K+F L H H+ Y C C K F+ LKRH + H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTG 112
+ CH C K+F L H H+ Y C C K F+ LKRH + H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K + CT CGK F L H + HTG+ G
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG 46
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 85 VKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
VK Y C+ C K F+ L H R+HTG
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTG 37
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVK 86
+ C C+K+FSL+ L H + H+ VK
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVK 39
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGK F L RH HTG+ G
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG 46
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 28.1 bits (61), Expect = 1.7, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 74 LLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDGKTNVLT 127
L+ RH+K H D K + T+ +G + ++ ++ H K VLT
Sbjct: 89 LVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLT 142
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
K + C C + F+ + LK HTRTHTG+
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGE 28
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K + C CGK F L H R HTG+ G
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSSG 46
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGK F L RH HTG+ G
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG 46
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 90 CTFCGKGFNDTFDLKRHTRTHTGK 113
C CGK F L H R HTG+
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGE 28
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 59 RFACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTGK 113
R+ C C +++ L H+ H+ K + C C KGF L RH+ THTG+
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTG 112
+ CH C K+F L H H+ Y C C K F+ LKRH + H G
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C C K F+ L +H R H+G+ G
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSSG 46
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 86 KRYLCTF--CGKGFNDTFDLKRHTRTHTG 112
K + CT+ CG F+ + +L RH R+H+G
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSG 39
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 88 YLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
Y C CGK F L H R+HTG+ G
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGPSSG 46
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 13/27 (48%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTG 112
K Y C CG F LK H R HTG
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTG 36
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGK F + L +H H+G+ G
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSSG 46
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K + C CGKGF H R+H+G+ G
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG 46
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
+ + C CGK F + L +H R HTG+ G
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG 46
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 16/36 (44%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGKGF DL H HTG+ G
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG 46
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGK F L +H R H+G+ G
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG 46
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C+ CGK F L H ++HTG+ G
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSSG 46
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K + C CGKGF+ L H + HTG+ G
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG 46
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 83 SDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
S K Y C CGK F+ L H R HTG+
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGK F L RH HTG+ G
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSSG 46
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGK F+ L +H R H+G+ G
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG 46
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
+ Y C+ CGK F L H R H G+ G
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSSG 46
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 88 YLCTFCGKGFNDTFDLKRHTRTHTG 112
Y C CGK F L H R HTG
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGK F L RH HTG+ G
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG 46
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 26.9 bits (58), Expect = 3.5, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 83 SDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
S K +C CGK F + L +H R H+G+
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGE 36
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 5 GLPKGVTLEFVNGGHGVKNPLANHDVSAIIXXXXXXTRV--EPEKVESTTGRKDNTRFAC 62
G+ VTLE + H + P + AI+ ++ E + K ++F C
Sbjct: 19 GIFIHVTLEELKRYHQL-TPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVC 77
Query: 63 HLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDT 100
LC FS L +H++ K +C C K F T
Sbjct: 78 PLCLMPFSSSVSLKQHIRYTEHTK--VCPVCKKEFTST 113
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C CGK F +L H HTG+ G
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSSG 46
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K Y C+ CGK F L+ H + HTG+ G
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG 46
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHS 83
+ C C KSF+ + L H KCH+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHT 36
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
K Y C +C K F D+ +LK H +T K
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSK 28
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 51 TTGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVK 86
++G F C C K+FS + L H + H++ K
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEK 37
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTR-THTGKXXXXXXDG 121
K Y C CGK F L RH R HTG+ G
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG 47
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 26.2 bits (56), Expect = 5.8, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 83 SDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S K Y+C+ CGK F L H HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVK 86
F C +C KSF + LNRH H+ K
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEK 39
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K + C CGK F L RH+ HT + G
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG 46
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
K + C CGK F+ L H R HTG+ G
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG 46
>pdb|2ELO|A Chain A, Solution Structure Of The 12th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 37
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 62 CHLCSKSFSLQRLLNRHMK 80
C +C KSFS RL+ H+K
Sbjct: 12 CPVCEKSFSEDRLIKSHIK 30
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 88 YLCTFCGKGFNDTFDLKRHTRTHTGKXXXXXXDG 121
++C+ CGK F +L H + HTG+ G
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGPSSG 46
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 88 YLCTFCGKGFNDTFDLKRHTRTHTGK 113
Y C CGK F+ L H +TH+G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQ 38
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 83 SDVKRYLCTFCGKGFNDTFDLKRHTRTHT 111
S K +LC CGK F LK H HT
Sbjct: 5 SSGKTHLCDMCGKKFKSKGTLKSHKLLHT 33
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 51 TTGRKDNTRFACHLCSKSFSLQRLLNRHMKCHS 83
++G+K+ F C+ C K+FS + L +H + H+
Sbjct: 5 SSGQKEKC-FKCNKCEKTFSCSKYLTQHERIHT 36
>pdb|1PAA|A Chain A, Structure Of A Histidine-X4-Histidine Zinc Finger
Domain: Insights Into Adr1-Uas1 Protein-Dna Recognition
Length = 30
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 60 FACHLCSKSFSLQRLLNRH-MKCHS 83
+AC LC+++F+ + LL RH K HS
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHS 27
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTR 108
K Y+C CGKGF+ L H +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIK 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,789,198
Number of Sequences: 62578
Number of extensions: 129797
Number of successful extensions: 634
Number of sequences better than 100.0: 178
Number of HSP's better than 100.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 356
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)