RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy691
(134 letters)
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 64.0 bits (157), Expect = 8e-15
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGKEE 115
F C +C ++FS L H++ H+ K + C CG+ F + + KRHT+ H +++
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 60.6 bits (148), Expect = 2e-13
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+AC + C + FS L RH++ H+ K + C C + F+ + L H RTHTG
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 62.5 bits (153), Expect = 3e-14
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGKEEEEEE 119
F C +C ++FS L H++ H+ K + C CG+ F + + KRH E++
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDK 63
Query: 120 DGKT 123
+
Sbjct: 64 VEEL 67
Score = 54.8 bits (133), Expect = 3e-11
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHT---RTHTG 112
FAC +C + F+ RH L + + + L+ + G
Sbjct: 32 FACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVARLKKLVG 86
Score = 41.7 bits (99), Expect = 3e-06
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 85 VKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+K + C C + F+ + L H RTHTG
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTG 28
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 59.3 bits (144), Expect = 5e-13
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDV---KRYLCTFCGKGFNDTFDLKRHTRTHTGKEEE 116
C +C + + LN H + H++ R+ C FCGK F + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 117 EEED 120
++
Sbjct: 68 APQE 71
Score = 38.5 bits (90), Expect = 4e-05
Identities = 8/35 (22%), Positives = 8/35 (22%)
Query: 82 HSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGKEEE 116
S C CG L H R H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAA 36
Score = 33.9 bits (78), Expect = 0.002
Identities = 7/39 (17%), Positives = 8/39 (20%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLC 90
RF C C K F + H
Sbjct: 31 AETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 60.2 bits (147), Expect = 5e-13
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ C C + FS L RH + H+ VK + C C + F+ + LK HTRTHTG
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTG 91
Score = 54.1 bits (131), Expect = 1e-10
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 65 CSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTG 112
C+K + L H + H+ K Y C F C + F+ + LKRH R HTG
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Score = 51.8 bits (125), Expect = 7e-10
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTH 110
F C C + FS L H + H+ K + C + C K F + +L RH H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 37.1 bits (87), Expect = 3e-04
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 86 KRYLCT--FCGKGFNDTFDLKRHTRTHTG 112
+ ++C C K + L+ H+R HTG
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTG 33
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 59.4 bits (145), Expect = 5e-13
Identities = 21/53 (39%), Positives = 24/53 (45%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
AC +C K F LNRH HS K Y C CG F + H R+H G
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Score = 51.7 bits (125), Expect = 6e-10
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHS--DVKRYLCTFCGKGFNDTFDLKRHT-RTHTG 112
++C +C F + ++ H++ H K Y+C CGKGF+ L H + H+G
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 39.8 bits (94), Expect = 2e-05
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 82 HSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S C CGK F D + L RH +H+G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSG 32
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 59.8 bits (146), Expect = 8e-13
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTG 112
C C K+F L RH H+ K + CTF CGK F+ F+L+ H R HTG
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 89
Score = 56.8 bits (138), Expect = 1e-11
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
AC C+K F + +H+ H + ++C CGK F ++ LKRH HTG
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTG 59
Score = 54.8 bits (133), Expect = 6e-11
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTG 112
F C C K FSL L H++ H+ + Y+C F C K F + +LK H TH
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Score = 25.9 bits (58), Expect = 3.1
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 65 CSKSFSLQRLLNRHMKCHSDVKRY 88
C+K F+ L H+ H+ K
Sbjct: 100 CNKKFAQSTNLKSHILTHAKAKNN 123
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 57.6 bits (140), Expect = 2e-12
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 60 FACHLCSKSFSLQRLLNRHM--KCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ C +CS+ ++ RH +VK Y C FC K F ++ H +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 37.9 bits (89), Expect = 6e-05
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 82 HSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGKEE 115
Y C C + + + RH T +
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNV 38
Score = 32.1 bits (74), Expect = 0.009
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDV 85
+ C C K F+ + + H+K +
Sbjct: 41 YPCPFCFKEFTRKDNMTAHVKIIHKI 66
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 56.7 bits (138), Expect = 5e-12
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
F C +C KSF L+ H+ HSD + Y C +CGK F+ D+K+HT HTG
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTG 54
Score = 50.9 bits (123), Expect = 9e-10
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ C C K F + + +H H+ K + C CGK F+ + +L H+R HTG
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 56.0 bits (136), Expect = 7e-12
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHS--DVKRYLCTFCGKGFNDTFDLKRHTRT-HTG 112
+ C++C F+ + H+ +V ++ C C DL H R H+
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71
Score = 48.3 bits (116), Expect = 8e-09
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 75 LNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGKEE 115
+ HS K Y C C F + +K H +
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENV 43
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 55.6 bits (135), Expect = 1e-11
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCH----SDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+AC C K+F ++LL+ H K + ++C+ CGK F + RH G
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAG 72
Score = 42.1 bits (100), Expect = 2e-06
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 75 LNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ H+ K Y C+ C K F L H + +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 40
Score = 37.5 bits (88), Expect = 1e-04
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGF 97
F C C K+F+ + + RH + G
Sbjct: 48 FVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 57.3 bits (139), Expect = 1e-11
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTG 112
C KSF + L H++ H+ K + C F CGK F + +LK H RTHTG
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTG 117
Score = 54.2 bits (131), Expect = 2e-10
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTG 112
F C C K F+ L H + H+ K + C F C + F ++ D K+H HT
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS 147
Score = 53.4 bits (129), Expect = 4e-10
Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 9/62 (14%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRY---------LCTFCGKGFNDTFDLKRHTRTH 110
C ++FS L H+ C GK F + L H R H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 111 TG 112
TG
Sbjct: 86 TG 87
Score = 48.4 bits (116), Expect = 3e-08
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 3/49 (6%)
Query: 67 KSFSLQRLLNRHMKC---HSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S S + + + + C C + F+ +L H
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHV 50
Score = 31.9 bits (73), Expect = 0.034
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCT 91
F C C + F+ +HM H+ K +
Sbjct: 121 FKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 55.5 bits (135), Expect = 2e-11
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
C +C K FS + L HM+CH+ VK Y C C D+ L +H R H+
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Score = 55.5 bits (135), Expect = 2e-11
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
C C + + LN+H++ HSD + + C C ++ L H R+HTG
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTG 89
Score = 38.6 bits (91), Expect = 6e-05
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 82 HSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ C CGK F+ LK H R HTG
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTG 33
Score = 26.2 bits (59), Expect = 1.8
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLC 90
F C +C + L H++ H+
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 54.4 bits (132), Expect = 3e-11
Identities = 13/53 (24%), Positives = 21/53 (39%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
C CS S S + L H + H + + C +C +L +H + G
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 39.8 bits (94), Expect = 1e-05
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 82 HSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S C+ C + L+ H R H
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCT 34
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 54.2 bits (131), Expect = 4e-11
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 40 PTRVEPEKVESTTGRKDNTRFACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGF 97
P + + +AC + C + FS L RH++ H+ K + C C + F
Sbjct: 3 PHPMNNLLNYVVPKMR---PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Query: 98 NDTFDLKRHTRTHT 111
+ + L H RTHT
Sbjct: 60 SRSDHLTTHIRTHT 73
Score = 36.9 bits (86), Expect = 1e-04
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 73 RLLNRHMKCHSDVKRYLCT--FCGKGFNDTFDLKRHTRTHTG 112
+ N ++ Y C C + F+ + +L RH R HTG
Sbjct: 5 PMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTG 46
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 54.0 bits (131), Expect = 4e-11
Identities = 21/51 (41%), Positives = 25/51 (49%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
C C SF + L H H+ K Y C CG FN +LK HTR H+G
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 42.8 bits (102), Expect = 7e-07
Identities = 11/38 (28%), Positives = 13/38 (34%)
Query: 75 LNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ H K Y C C F +L H HTG
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTG 42
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 55.3 bits (134), Expect = 7e-11
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTG 112
C + F Q +L HM+ H+ K + CTF C K ++ +LK H R+HTG
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG 94
Score = 51.4 bits (124), Expect = 2e-09
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRH-TRTHTG 112
C C KS+S L H++ H+ K Y+C C K F++ D +H RTH+
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN 125
Score = 51.4 bits (124), Expect = 2e-09
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 65 CSKSFSLQRLLNRHMKC-HSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTG 112
CSK+FS +H HS+ K Y+C C K + D L++H +T G
Sbjct: 105 CSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 51.4 bits (124), Expect = 2e-09
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 62 CHLCSKSFSLQRLLNRHMKC---HSDVKRYLCTFCG-----KGFNDTFDLKRHTRTHTG 112
CS+ F Q L H+ H + K ++C + G + F + L H R HTG
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Score = 33.0 bits (76), Expect = 0.012
Identities = 5/31 (16%), Positives = 8/31 (25%), Gaps = 3/31 (9%)
Query: 86 KRYLCTFCGKGFNDTFDLKRH---TRTHTGK 113
C + F+ L H H +
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGER 32
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 52.5 bits (127), Expect = 1e-10
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHT-RTHTG 112
F C +C+++F+ Q L RH + H++ K Y C C + F L RH + H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 39.4 bits (93), Expect = 1e-05
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ ++C C + F LKRH R+HT
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTN 27
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 52.9 bits (128), Expect = 1e-10
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 60 FACHL--CSKSFSLQRLLNRHMK-CHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTG 112
C C + FS ++ LN H K H K + C CGK FN LK H + H+
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Score = 42.2 bits (100), Expect = 2e-06
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 60 FAC--HLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGF 97
F+C C KSF+ ++ L HMK HSD + Y+C F G
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 52.5 bits (127), Expect = 1e-10
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ C C K+FS +L +H + H+ K Y C CGK F+ L H R HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 41.7 bits (99), Expect = 2e-06
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 75 LNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ HS K Y C CGK F+ + L +H R HTG
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTG 39
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 52.8 bits (128), Expect = 2e-10
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ C +C K+F Q L H HS K + C CGKGF + L H H
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQ 98
Score = 52.1 bits (126), Expect = 5e-10
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
F C C + F+ L H + H+D + Y C C K F L+ H H+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSK 70
Score = 44.3 bits (106), Expect = 4e-07
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 75 LNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K ++C FCG+ F +++L H RTHT
Sbjct: 5 SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTD 42
Score = 27.0 bits (61), Expect = 1.00
Identities = 9/32 (28%), Positives = 9/32 (28%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
F C C K F R L H H
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 51.7 bits (125), Expect = 3e-10
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHT 111
R+ R+ C C KSFS L++H + H+ K Y C CGK F L H R HT
Sbjct: 14 RERR---RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Query: 112 G 112
G
Sbjct: 71 G 71
Score = 44.7 bits (107), Expect = 1e-07
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 75 LNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
R + +RY C CGK F+ + DL +H RTHTG
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG 43
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 52.2 bits (126), Expect = 3e-10
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHT 111
+ C C F+ L RH + H+ K + C C + F+ + L H + H
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 50.3 bits (121), Expect = 2e-09
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 49 ESTTGRKDNTRFACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLK 104
S + C C+K ++ L H++ H+ K Y CT+ C F + +L
Sbjct: 5 SSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELT 64
Query: 105 RHTRTHTG 112
RH R HTG
Sbjct: 65 RHYRKHTG 72
Score = 31.8 bits (73), Expect = 0.018
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSD 84
TG K F C +C++SFS L HMK H +
Sbjct: 71 TGAK---PFQCGVCNRSFSRSDHLALHMKRHQN 100
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 53.6 bits (130), Expect = 5e-10
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ C C KSFS ++ L RH + H+ K Y C CGK F+ +L+ H RTHTG
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTG 102
Score = 52.8 bits (128), Expect = 1e-09
Identities = 27/53 (50%), Positives = 31/53 (58%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+AC C KSFS L H + H+ K Y C CGK F+D DL RH RTHTG
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Score = 52.8 bits (128), Expect = 1e-09
Identities = 24/53 (45%), Positives = 29/53 (54%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+AC C KSFS L H + H+ K Y C CGK F+ +L H RTHTG
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG 158
Score = 52.4 bits (127), Expect = 1e-09
Identities = 23/51 (45%), Positives = 28/51 (54%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
C C KSFS + L+ H + H+ K Y C CGK F+ L H RTHTG
Sbjct: 136 CPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 52.4 bits (127), Expect = 1e-09
Identities = 23/51 (45%), Positives = 28/51 (54%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
C C KSFS + L H + H+ K Y C CGK F+ L+ H RTHTG
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTG 130
Score = 43.2 bits (103), Expect = 4e-06
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 68 SFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S K Y C CGK F+ + L H RTHTG
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTG 46
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 52.1 bits (126), Expect = 6e-10
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ C C KSF+ + +RHM H ++ Y C CGK F L H + HTG
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Score = 49.7 bits (120), Expect = 4e-09
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ C +C K F ++ L HMK H+ +K Y C C K F H +
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSC 88
Score = 32.4 bits (75), Expect = 0.011
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFN 98
C++C+K F + +RH+ S K Y +
Sbjct: 68 CNICAKRFMWRDSFHRHV--TSCTKSYEAAKAEQNTT 102
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 50.5 bits (120), Expect = 7e-10
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 59 RFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
++ C C +L +H++ H+DV+ Y CT+C F +L +H ++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 34.3 bits (78), Expect = 0.001
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 87 RYLCTFCGKGFNDTFDLKRHTRTHTGKE 114
+Y+C CG LK+H RTHT
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVR 28
Score = 27.0 bits (59), Expect = 0.58
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKR 87
+ C C+ SF + L +HMK + K+
Sbjct: 30 YHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 52.1 bits (126), Expect = 8e-10
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 60 FACHLCSKSFSLQRLLNRHMKC---HSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
F C C K + + L H + + + C+ C + F +L+ H +HTG
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTG 91
Score = 51.7 bits (125), Expect = 9e-10
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRH-TRTHTG 112
F C +C ++F + L HM H+ Y C+ C + F DL+ H + H+G
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 50.6 bits (122), Expect = 3e-09
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTR---THTG 112
C C K F + L H + H+ K + C CGK + +L H +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 82 HSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S C C K F + LK H R HTG
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTG 32
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 50.3 bits (121), Expect = 1e-09
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 65 CSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTGKEEEEEE 119
C K+F L H H+ Y C C K F+ LKRH + H G ++++
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD 65
Score = 38.4 bits (90), Expect = 5e-05
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 65 CSKSFSLQRLLNRHMKCHSDV---KRYLCTFCGKGFNDTFDLKRHTRTH 110
C K FSL L RH K H+ K C+F GK + LK H
Sbjct: 39 CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLY--LKHVAECH 85
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 49.8 bits (120), Expect = 2e-09
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTH 110
+ C C F+ L RH + H+ + + C C + F+ + L H + H
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 49.8 bits (120), Expect = 2e-09
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 59 RFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT--FCGKGFNDTFDLKRHTRTHTG 112
C K+++ L H++ H+ K Y C CG F + +L RH R HTG
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 62
Score = 37.5 bits (88), Expect = 1e-04
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 82 HSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ CGK + + LK H RTHTG
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTG 32
Score = 31.0 bits (71), Expect = 0.033
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCH 82
TG + F C C ++FS L HMK H
Sbjct: 61 TGHR---PFQCQKCDRAFSRSDHLALHMKRH 88
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 51.1 bits (123), Expect = 4e-09
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 52 TGRKDNTRFACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCT--FCGKGFNDTFDLKRHT 107
K R+ C C +++ L H+ H+ K + C C KGF L RH+
Sbjct: 8 VVYK---RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHS 64
Query: 108 RTHTG 112
THTG
Sbjct: 65 LTHTG 69
Score = 49.5 bits (119), Expect = 2e-08
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 65 CSKSFSLQRLLNRHMKCHSDVKRYLCT--FCGKGFNDTFDLKRHTRTHTG 112
C K F+ L RH H+ K + C C F ++K+H
Sbjct: 50 CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHN 99
Score = 49.5 bits (119), Expect = 2e-08
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 65 CSKSFSLQRLLNRHMKCHSDVKRYLCT--FCGKGFNDTFDLKRHTRTHTGKEEE 116
C K+F L H H+ Y C C K F+ LKRH + H G +
Sbjct: 112 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCK 165
Score = 38.0 bits (89), Expect = 3e-04
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 65 CSKSFSLQRLLNRHMKCHSDVKR---YLCTFCGKGFNDTFDLKRHTRTHT 111
C K FSL L RH K H+ C+F GK + T LK H
Sbjct: 142 CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW--TLYLKHVAECHQ 189
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 45.8 bits (109), Expect = 6e-08
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTH 110
C C K++ L H + H+ K + C++ C + F + +L RH RTH
Sbjct: 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 41.2 bits (97), Expect = 3e-06
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 75 LNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTG 112
+ S ++ ++C+ CGK + + LK HTRTHTG
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTG 44
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 46.1 bits (109), Expect = 7e-08
Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 9/62 (14%)
Query: 60 FACHLCSKSFSLQRLLNRHM-KCHSDVKRY--------LCTFCGKGFNDTFDLKRHTRTH 110
C ++FS L H+ H C GK F + L H R H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 111 TG 112
TG
Sbjct: 86 TG 87
Score = 31.1 bits (70), Expect = 0.031
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 82 HSDVKRYLCTFCGKGFNDTFDLKRH-TRTHTGKEEEEE 118
C + F+ +L H T H G E+
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNN 57
Score = 29.2 bits (65), Expect = 0.16
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 52 TGRKDNTRFACH-----LCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
G + C+ KSF + L H++ H+ K +
Sbjct: 50 VGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 44.1 bits (105), Expect = 1e-07
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
+D K Y C CGK F F L RH + HT K
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRK 38
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 43.0 bits (101), Expect = 4e-07
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 82 HSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
K+ C CGK F D + L RH +H+G
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSG 37
Score = 40.3 bits (94), Expect = 5e-06
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 49 ESTTGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFC 93
S + + + AC +C K F LNRH HS K Y
Sbjct: 2 SSGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 6e-07
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S K Y+C +CGK F + +L RH R HTG
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTG 37
Score = 26.3 bits (59), Expect = 0.65
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
+G K + C C K+F L L RH + H+ K +
Sbjct: 8 SGEK---PYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 44.1 bits (103), Expect = 7e-07
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 54 RKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRH 106
R C CS F L H + K+ C C + F +F + RH
Sbjct: 37 RLCRNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWRH 88
Score = 39.9 bits (92), Expect = 2e-05
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 55 KDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
++ + C LC+ S H + + +C +C F + H K
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLCRN--AAVCPYCSLRFFSPELKQEHESKCEYK 68
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 42.1 bits (100), Expect = 8e-07
Identities = 13/35 (37%), Positives = 13/35 (37%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
K Y C CG F LK H R HTG
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 28.2 bits (64), Expect = 0.13
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCH 82
+ C +C F + L H++ H
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIH 34
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 41.7 bits (99), Expect = 1e-06
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ +K Y+C CGK F L HTRTHTG
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 24.0 bits (53), Expect = 4.5
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLC 90
C+ C K+F + L H + H+
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 1e-06
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S K Y C CGKG+N +L H R H G
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 25.9 bits (58), Expect = 1.1
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
+ C C K ++ + L+ H + H K +
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 41.7 bits (99), Expect = 1e-06
Identities = 11/35 (31%), Positives = 12/35 (34%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
K Y C CG F L+ H HTG
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTG 36
Score = 25.2 bits (56), Expect = 1.9
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRY 88
+ C C F L H+ H+
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 1e-06
Identities = 13/36 (36%), Positives = 14/36 (38%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S K + C CGK F L H R HTG
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTG 37
Score = 25.6 bits (57), Expect = 1.6
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
+G K F C C K F+ L+ H + H+ K +
Sbjct: 8 SGEK---PFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 2e-06
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGK F+ T L RH R HTG
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTG 37
Score = 25.9 bits (58), Expect = 0.89
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C+ C K+FS L RH + H+ K +
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 2e-06
Identities = 15/35 (42%), Positives = 16/35 (45%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S K Y C CGKG+ DL H R HTG
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTG 37
Score = 25.6 bits (57), Expect = 1.2
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
+G K + C C K + + L+ H + H+ K +
Sbjct: 8 SGEK---PYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 41.5 bits (98), Expect = 2e-06
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 78 HMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTG 112
+ K + CT+ CG F+ + +L RH R+H+G
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSG 39
Score = 30.3 bits (69), Expect = 0.024
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 60 FACH--LCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
FAC C FS L+RH + HS VK +
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 41.4 bits (98), Expect = 2e-06
Identities = 14/36 (38%), Positives = 14/36 (38%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S K Y C CGK F L H RTH G
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 25.6 bits (57), Expect = 1.4
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLC 90
C+ C K+F + LL H + H+ V
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 2e-06
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGK F L+ H R HTG
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTG 37
Score = 25.2 bits (56), Expect = 2.1
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
TG K + C C K+F L H + H+ K +
Sbjct: 8 TGEK---PYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 2e-06
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGKG+N F+L H + HTG
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTG 37
Score = 24.0 bits (53), Expect = 5.0
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C C K ++ + L+ H K H+ + +
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 2e-06
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ VK Y+C CGK F+ L H HTG
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTG 37
Score = 25.6 bits (57), Expect = 1.3
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLC 90
C+ C K+FS+ L H H+ K
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.9 bits (97), Expect = 2e-06
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K + C+ C K FN +L H RTHTG
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTG 37
Score = 25.5 bits (57), Expect = 1.3
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
F C C K+F+ + L H + H+ K +
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 41.0 bits (97), Expect = 2e-06
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S K + C CGK F L+ H R H G
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMG 37
Score = 25.6 bits (57), Expect = 1.2
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C C K+F L H + H K +
Sbjct: 15 CDECGKNFCYISALRIHQRVHMGEKCSGPS 44
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 2e-06
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y+C CGK F +L +H + HT
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTK 37
Score = 26.3 bits (59), Expect = 0.63
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
TG K + C C K+F+++ L +H K H+ K +
Sbjct: 8 TGEK---PYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 3e-06
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K + C CGK +N L +H R HTG
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTG 37
Score = 26.3 bits (59), Expect = 0.65
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
F C C KS++ + L +H + H+ K +
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 3e-06
Identities = 13/36 (36%), Positives = 14/36 (38%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGK F L H R HTG
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTG 37
Score = 25.2 bits (56), Expect = 1.9
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
TG K + C+ C K F+ L H + H+ VK +
Sbjct: 8 TGEK---PYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 3e-06
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K + C CGK F+D L +H R HTG
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTG 37
Score = 27.5 bits (62), Expect = 0.26
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
TG K F C C K+FS LN+H + H+ K +
Sbjct: 8 TGEK---PFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 3e-06
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C+ CGK F+ L H RTH+G
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSG 37
Score = 27.1 bits (61), Expect = 0.33
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
+ C C K+FS + L HM+ HS K +
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.9 bits (97), Expect = 3e-06
Identities = 13/36 (36%), Positives = 14/36 (38%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGK F L RH HTG
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTG 37
Score = 25.9 bits (58), Expect = 1.1
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
TG K + C+ C K F+ L RH H+ K +
Sbjct: 8 TGEK---PYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.9 bits (97), Expect = 3e-06
Identities = 13/36 (36%), Positives = 14/36 (38%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S K + C CGK F L H R HTG
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTG 37
Score = 27.8 bits (63), Expect = 0.21
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
F C C K+F L H++ H+ K +
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 3e-06
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ + Y+CT CGK F D +L +H + HTG
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 25.5 bits (57), Expect = 1.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLC 90
C +C K+F+ + L +H K H+ K
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 4e-06
Identities = 14/36 (38%), Positives = 14/36 (38%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S K Y C CGK F L H R HTG
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 25.1 bits (56), Expect = 1.8
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C+ C K F+ L H + H+ K +
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 40.2 bits (95), Expect = 4e-06
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K + C CGKGF+ L H + HTG
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTG 37
Score = 27.1 bits (61), Expect = 0.33
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
TG K F C C K FS + LN H K H+ K +
Sbjct: 8 TGEK---PFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 4e-06
Identities = 13/36 (36%), Positives = 14/36 (38%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGK F L RH HTG
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTG 37
Score = 26.7 bits (60), Expect = 0.52
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
+ CH C K F L RH H+ K +
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 4e-06
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S K Y C+ CGK F+ L H R HTG
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTG 37
Score = 25.5 bits (57), Expect = 1.4
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
+ C C K+F LN H + H+ + +
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 4e-06
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K + C CGK F L RH+ HT
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTA 37
Score = 27.5 bits (62), Expect = 0.25
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
TG K F C +C KSF + LNRH H+ K +
Sbjct: 8 TGEK---PFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 40.2 bits (95), Expect = 5e-06
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S K + C CG+GF L +H R HTG
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTG 37
Score = 27.9 bits (63), Expect = 0.18
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
CH C + F+L+ LN+H + H+ K +
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 5e-06
Identities = 13/36 (36%), Positives = 14/36 (38%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S K + C CGK F L H R HTG
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTG 37
Score = 25.6 bits (57), Expect = 1.2
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
+G K F C C K F+ L+ H + H+ K +
Sbjct: 8 SGEK---PFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 39.8 bits (94), Expect = 6e-06
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ VK Y C+ C K F+ L H R+HTG
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTG 37
Score = 26.7 bits (60), Expect = 0.56
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
+ C C+K+FSL+ L H + H+ VK +
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 6e-06
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y+C CGK F L RH R HTG
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTG 37
Score = 26.3 bits (59), Expect = 0.83
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
TG K + C+ C KSF + LNRH + H+ K +
Sbjct: 8 TGEK---PYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 39.8 bits (94), Expect = 6e-06
Identities = 14/35 (40%), Positives = 15/35 (42%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGKGF DL H HTG
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTG 37
Score = 25.2 bits (56), Expect = 1.6
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C C K F +R L H H+ K +
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 6e-06
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGK F L RH R HTG
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTG 37
Score = 26.3 bits (59), Expect = 0.72
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
TG K + C+ C K F L+RH + H+ K +
Sbjct: 8 TGEK---PYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 39.8 bits (94), Expect = 6e-06
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ + Y C CGK F L H R+HTG
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTG 37
Score = 25.2 bits (56), Expect = 1.7
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C C K+F + L H + H+ K +
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 39.8 bits (94), Expect = 6e-06
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S K + C CGKGF H R+H+G
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSG 37
Score = 27.1 bits (61), Expect = 0.41
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCG 94
+G K F C C K F H + HS K + G
Sbjct: 8 SGEK---PFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 6e-06
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ + Y C+ CGK F L H R HTG
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTG 37
Score = 25.2 bits (56), Expect = 1.9
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C C K+F+ + L H + H+ K +
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 39.9 bits (94), Expect = 6e-06
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGK F L +H R H+G
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSG 37
Score = 26.4 bits (59), Expect = 0.81
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C C KSF L +H + HS K +
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 6e-06
Identities = 10/35 (28%), Positives = 12/35 (34%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S + Y C CGK F L H + H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFR 37
Score = 30.2 bits (69), Expect = 0.025
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
+ C+ C K+F L H+K H K +
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 6e-06
Identities = 12/36 (33%), Positives = 14/36 (38%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGK F+ L H HTG
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 26.0 bits (58), Expect = 1.1
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C+ C K+FS++ L H H+ K +
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 39.9 bits (94), Expect = 7e-06
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 60 FACHLCSKSFSLQRLLNRHMKC-HSDVKRYLCTFCGKGFND 99
+ C C K FS LN H+K H+ + + C G +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 37.9 bits (89), Expect = 4e-05
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHT-RTHTG 112
S K Y+C CGKGF+ L H + HT
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTS 38
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 7e-06
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C+ CGK F L+ H + HTG
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTG 37
Score = 26.7 bits (60), Expect = 0.45
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C C KSF+ + L H KCH+ + +
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 7e-06
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGK F +L +H R HTG
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTG 37
Score = 25.5 bits (57), Expect = 1.3
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
TG K + C C K+F+ + L +H + H+ K +
Sbjct: 8 TGEK---PYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.5 bits (93), Expect = 8e-06
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGK F D +H R HTG
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTG 37
Score = 26.0 bits (58), Expect = 0.95
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
TG K + C C K+F +H + H+ + +
Sbjct: 8 TGEK---PYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 39.4 bits (93), Expect = 8e-06
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGK F+ T L +H R HTG
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTG 37
Score = 26.7 bits (60), Expect = 0.47
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
TG K + C C K+FS L +H + H+ K +
Sbjct: 8 TGEK---PYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 39.5 bits (93), Expect = 8e-06
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
K Y C CGK F+ L H R HTG
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 23.3 bits (51), Expect = 8.4
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRY 88
+ C C K+FS + L H++ H+
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 39.4 bits (93), Expect = 8e-06
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ KRY C CGK F+ L +H + HTG
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 25.6 bits (57), Expect = 1.3
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
TG K R+ C+ C K FS L++H K H+ K +
Sbjct: 8 TGEK---RYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 8e-06
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGK F + L +H R HT
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQ 37
Score = 29.4 bits (67), Expect = 0.061
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
++C++C K+F L LN+H++ H+ +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 9e-06
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C+ CGK F+ L H R H+G
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 24.0 bits (53), Expect = 4.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C +C K+FS ++ L+ H + HS K +
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 9e-06
Identities = 14/35 (40%), Positives = 15/35 (42%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGK F L RH R HTG
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTG 37
Score = 25.6 bits (57), Expect = 1.5
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
TG K + C+ C K F+ L RH + H+ K +
Sbjct: 8 TGEK---PYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 9e-06
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ Y C CGK F+ + L H RTH G
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAG 37
Score = 24.8 bits (55), Expect = 2.3
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
+ CH C K+FS + L H + H+ K +
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 1e-05
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C C K F L +H +THTG
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 26.3 bits (59), Expect = 0.78
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
+ C +CSK+F+ + L +H K H+ K +
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 1e-05
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ + + C CGK F + L +H R HTG
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTG 37
Score = 25.2 bits (56), Expect = 1.8
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C+ C KSF L +H + H+ K +
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 1e-05
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K + C CGK F+ L H R HTG
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTG 37
Score = 25.6 bits (57), Expect = 1.4
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C C KSFS L H + H+ +
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 1e-05
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGK F L RH HTG
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTG 37
Score = 25.5 bits (57), Expect = 1.2
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
+ C+ C K F+ L RH H+ K +
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 1e-05
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C+ CGK F L H ++HTG
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTG 37
Score = 25.9 bits (58), Expect = 1.1
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C C K+F+ + L+ H + H+ + +
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 1e-05
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGK F+ L +H R H+G
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSG 37
Score = 27.5 bits (62), Expect = 0.27
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
TG K + C C KSFS L +H + HS K +
Sbjct: 8 TGEK---LYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 1e-05
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ + Y C+ CGK F L H R H G
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRG 37
Score = 24.8 bits (55), Expect = 2.4
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C C K+F + L+ H + H K +
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 1e-05
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
K Y C+ CGK F+ ++ L +H THT
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTR 37
Score = 26.7 bits (60), Expect = 0.43
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C C KSFS L +H H+ K +
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKPSGPS 44
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 1e-05
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K + C CG F+ + L +H R+H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHER 37
Score = 28.7 bits (65), Expect = 0.092
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCG 94
F C C +FS L +H++ H G
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGP-SSG 46
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 39.1 bits (92), Expect = 1e-05
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ V Y C+ C K F+ L H R HT
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTR 37
Score = 26.0 bits (58), Expect = 1.0
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
+ C C KSFS + L H + H+ K +
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 1e-05
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C+ CGK F L H + HTG
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTG 37
Score = 24.8 bits (55), Expect = 2.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C +C KSF+ + L+ H + H+ K +
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 1e-05
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C+ CGK F L H R HTG
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTG 37
Score = 24.4 bits (54), Expect = 3.9
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLC 90
C C KSF + L+ H + H+
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 39.1 bits (92), Expect = 1e-05
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ + C+ CGK F + +H R HTG
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTG 37
Score = 24.4 bits (54), Expect = 3.4
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C C K F +H + H+ K +
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 1e-05
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGK F D +L H + HTG
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTG 37
Score = 25.9 bits (58), Expect = 1.1
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLC 90
C C K+F+ + L H K H+ K
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 39.0 bits (92), Expect = 1e-05
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C C K FN +L H RTHTG
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 24.0 bits (53), Expect = 5.2
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLC 90
C+ C K+F+ + L H + H+
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 38.7 bits (91), Expect = 2e-05
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
K + C C F+ L+ H H G
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVG 37
Score = 26.4 bits (59), Expect = 0.79
Identities = 8/30 (26%), Positives = 9/30 (30%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C C FS L H H K +
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 38.6 bits (91), Expect = 2e-05
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K + C CGK F+ + L H R HTG
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTG 37
Score = 25.9 bits (58), Expect = 0.95
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
F C C KSFS+ L H + H+ K +
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 2e-05
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K + C C K F + L H R HTG
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTG 37
Score = 24.4 bits (54), Expect = 3.5
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
F C+ C K+F+ L H + H+ K +
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 2e-05
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGK F+ T L RH R HTG
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTG 37
Score = 26.3 bits (59), Expect = 0.71
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C+ C K+FS L RH + H+ K +
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 2e-05
Identities = 12/36 (33%), Positives = 14/36 (38%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGK F L H TH+G
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSG 37
Score = 25.2 bits (56), Expect = 2.2
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C+ C K+F + L H HS K +
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSGPS 44
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 2e-05
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C C K F+ L +H R H+G
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSG 37
Score = 24.4 bits (54), Expect = 3.1
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C +C K+FS L +H + HS K +
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 2e-05
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGK F L RH HTG
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTG 37
Score = 24.8 bits (55), Expect = 2.3
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
+ C+ C K F+ L RH H+ K +
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 38.7 bits (91), Expect = 2e-05
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K + CT CGK F +L H R HTG
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTG 37
Score = 26.7 bits (60), Expect = 0.54
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
F C C KSF + L H + H+ K +
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 2e-05
Identities = 12/35 (34%), Positives = 13/35 (37%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C C K F L H R HTG
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 26.3 bits (59), Expect = 0.77
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
TG K + C +C KSF L H + H+ K +
Sbjct: 8 TGEK---PYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 2e-05
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGK F +L H HTG
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTG 37
Score = 25.2 bits (56), Expect = 1.9
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C+ C K+F L H H+ K +
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 2e-05
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ ++C+ CGK F +L H + HTG
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTG 37
Score = 25.1 bits (56), Expect = 1.7
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
F C C K F+ + L H K H+ + +
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 2e-05
Identities = 13/36 (36%), Positives = 14/36 (38%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S K Y C C K F L +H R HTG
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTG 37
Score = 26.3 bits (59), Expect = 0.65
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLC 90
C C K+F LN+H + H+ +
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERSSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-05
Identities = 12/36 (33%), Positives = 13/36 (36%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K CT CGK F L H RTH
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVD 37
Score = 28.3 bits (64), Expect = 0.12
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C C K+F + L H + H D K +
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-05
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K Y C CGK F + L +H H+G
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSG 37
Score = 26.7 bits (60), Expect = 0.53
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
+ C +C K+F + L +H HS + +
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 40.3 bits (93), Expect = 2e-05
Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 37 PPPPTRVEPEKVESTTGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKG 96
P E + K ++F C LC FS L +H++ +C C K
Sbjct: 52 HNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKE 109
Query: 97 FNDTFDLKRHT-RTHTG 112
F T H + H
Sbjct: 110 FTSTDSALDHVCKKHNI 126
Score = 33.0 bits (74), Expect = 0.011
Identities = 7/48 (14%), Positives = 18/48 (37%)
Query: 64 LCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHT 111
+ + + + + +++C C F+ + LK+H R
Sbjct: 51 IHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE 98
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 3e-05
Identities = 15/35 (42%), Positives = 16/35 (45%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S K Y C CGK F+ L H RTHTG
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTG 37
Score = 26.3 bits (59), Expect = 0.72
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
+ C+ C K+FS + +L+ H + H+ K +
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 37.7 bits (88), Expect = 3e-05
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ ++C C + F LKRH R+HT
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTN 27
Score = 28.4 bits (64), Expect = 0.091
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVK 86
F C +C+++F+ Q L RH + H++ K
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 3e-05
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S + + C CGKGF L H R H+
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSR 37
Score = 26.3 bits (59), Expect = 0.79
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
F C+ C K F + L H++ HS K +
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 38.5 bits (89), Expect = 3e-05
Identities = 11/55 (20%), Positives = 15/55 (27%), Gaps = 7/55 (12%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGKE 114
C C F S K +C C K L + +GK+
Sbjct: 19 QKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKK 66
Score = 25.4 bits (55), Expect = 2.7
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRY 88
C C K + LN+ S K
Sbjct: 40 PMCEKCRKDSCQEAALNKDEGNESGKKTS 68
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 37.6 bits (88), Expect = 3e-05
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 86 KRYLCTF--CGKGFNDTFDLKRHTRTHTG 112
+ ++CT+ CGK F + +L+RH RTHTG
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTG 29
Score = 23.3 bits (51), Expect = 6.1
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 60 FACH--LCSKSFSLQRLLNRHMKCHSDVK 86
F C C K F+ L RH + H+ K
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 3e-05
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
K Y C CGK F+ + L+ H R HTG
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 24.8 bits (55), Expect = 2.7
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
C +C K FS L H + H+ K +
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.5 bits (88), Expect = 5e-05
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ Y C CGK F+ L H +TH+G
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSG 37
Score = 23.6 bits (52), Expect = 6.2
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLC 90
C C K FS + L H K HS
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 5e-05
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ K + CT CGK F L H + HTG
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTG 37
Score = 25.9 bits (58), Expect = 0.91
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
TG K F C C K+F+ + L+ H K H+ K +
Sbjct: 8 TGGK---HFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 37.3 bits (87), Expect = 6e-05
Identities = 10/35 (28%), Positives = 12/35 (34%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
YLC CGK F L H R+ +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQ 36
Score = 24.5 bits (54), Expect = 3.2
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHS 83
+ C C KSF+ + L H + S
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCS 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 37.2 bits (87), Expect = 8e-05
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTR-THTG 112
+ K Y C CGK F L RH R HTG
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTG 38
Score = 23.7 bits (52), Expect = 7.5
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKC-HSDVKRYLCT 91
TG+K + C C K+F L RH + H+ K +
Sbjct: 8 TGKK---PYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 36.7 bits (86), Expect = 9e-05
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 82 HSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S K + C+ C K F+ L H +TH
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAE 35
Score = 28.3 bits (64), Expect = 0.12
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSDVKRYLCT 91
F C C K+FS + L H + H++ K +
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 36.8 bits (85), Expect = 9e-05
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGKEEEE 117
+ + C+ C + F L +H RTH K
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPS 42
Score = 26.4 bits (58), Expect = 0.62
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSD 84
F C C + F+ + L +H + H+
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHAR 37
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 39.5 bits (91), Expect = 1e-04
Identities = 12/94 (12%), Positives = 18/94 (19%), Gaps = 2/94 (2%)
Query: 19 HGVKNPLANHDVSAIIPPPPPPTRVEPEKVESTTGRKD--NTRFACHLCSKSFSLQRLLN 76
+ + V++ G + S S
Sbjct: 110 AKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARV 169
Query: 77 RHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTH 110
S Y C C DL H +H
Sbjct: 170 GLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 32.9 bits (74), Expect = 0.021
Identities = 10/57 (17%), Positives = 16/57 (28%)
Query: 31 SAIIPPPPPPTRVEPEKVESTTGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKR 87
+ I P +V + CH+CS L+ H+ H
Sbjct: 152 TRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGN 208
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 36.1 bits (84), Expect = 2e-04
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 82 HSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
S K Y C C + F+D L +H + HT K
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVK 36
Score = 25.0 bits (55), Expect = 2.3
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHS 83
++C C ++FS L +H K H+
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHT 34
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 35.6 bits (83), Expect = 2e-04
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 80 KCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S Y C+ CGK FN L H RTH G
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAG 35
Score = 24.4 bits (54), Expect = 3.8
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLC 90
C C K+F+ + L H + H+
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSS 41
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 35.1 bits (80), Expect = 4e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 85 VKRYLCTFCGKGFNDTFDLKRHTRTHTGKE 114
+K Y+C C + F D L+RH R HTG++
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 34.6 bits (80), Expect = 4e-04
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 86 KRYLCTF--CGKGFNDTFDLKRHTRTHTG 112
K+++C CGK + T L+ H R HTG
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTG 35
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 34.9 bits (81), Expect = 4e-04
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTG 112
+ Y C CGK F L H R HTG
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTG 35
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 36.7 bits (84), Expect = 5e-04
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 62 CHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRH-TRTHTGKEEEEEED 120
+ S +R L K C +CG F DL H +T ++
Sbjct: 55 NNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPSS 114
Query: 121 G 121
G
Sbjct: 115 G 115
Score = 32.4 bits (73), Expect = 0.013
Identities = 8/62 (12%), Positives = 16/62 (25%), Gaps = 5/62 (8%)
Query: 58 TRFACHLCSKSFSLQRLLNRHMK-----CHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
++F C CS ++ L HM + + L
Sbjct: 18 SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA 77
Query: 113 KE 114
++
Sbjct: 78 QK 79
Score = 32.4 bits (73), Expect = 0.013
Identities = 6/50 (12%), Positives = 15/50 (30%)
Query: 75 LNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGKEEEEEEDGKTN 124
+ + ++ C C ++ +L H ++ E N
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNN 56
Score = 27.4 bits (60), Expect = 0.92
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 60 FACHLCSKSFSLQRLLNRHMK 80
C C SF + L+ HM
Sbjct: 81 LKCMYCGHSFESLQDLSVHMI 101
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 34.2 bits (79), Expect = 7e-04
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 78 HMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTH 110
+ + +K + C C + F+ + L H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 30.4 bits (69), Expect = 0.021
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCH 82
TG K F C C +SFS L H K H
Sbjct: 7 TGIK---PFQCPDCDRSFSRSDHLALHRKRH 34
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 31.8 bits (72), Expect = 0.008
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 86 KRYLCTF--CGKGFNDTFDLKRHTRTHTG 112
K + C F C K F ++++ H +TH
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding
protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB:
2ab7_A
Length = 29
Score = 30.8 bits (69), Expect = 0.012
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 88 YLCTF--CGKGFNDTFDLKRHTRTHTG 112
Y+C F CG+ FND L RH + HTG
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHTG 29
Score = 26.9 bits (59), Expect = 0.31
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 60 FACHL--CSKSFSLQRLLNRHMKCHS 83
+ CH C +SF+ +R LNRH K H+
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHT 28
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 30.7 bits (69), Expect = 0.014
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 59 RFACHLCSKSFSLQRLLNRHMKCHSDVKR 87
+FAC C K F L++H+ H +
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 26.0 bits (57), Expect = 0.71
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 87 RYLCTFCGKGFNDTFDLKRHTRTHTGKEEEEE 118
++ C C K F + L +H H EE
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLGEERR 33
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 32.1 bits (72), Expect = 0.017
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Query: 53 GRKDNTRFACHLCSKSFSLQRLLNRHM-KCHSDVKR---YLCTFCGKGFNDTFDLKRH-T 107
+K + C C+ + H+ H +V Y+C C L H
Sbjct: 12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNL 71
Query: 108 RTHTG 112
+ H G
Sbjct: 72 KYHPG 76
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 29.9 bits (67), Expect = 0.029
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 59 RFACHLCSKSFSLQRLLNRHMKCHSDVK 86
+FAC C K F L H+ H + K
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENKK 29
Score = 25.6 bits (56), Expect = 0.91
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 87 RYLCTFCGKGFNDTFDLKRHTRTHTGK 113
++ C C K F + L H H K
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENK 28
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 30.0 bits (67), Expect = 0.030
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 88 YLCTF--CGKGFNDTFDLKRHTRTHTGK 113
Y C C K F DL RH ++H K
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 31.1 bits (69), Expect = 0.036
Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 55 KDNTRFACHLCSKSFSLQRL-LNRHMK-CHSDVKRYLCTFCGKGFNDTFDLKRHTR-THT 111
+ C C+ + L +HM+ C C C K F L HT H+
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Query: 112 GKEEEEEED 120
K + E
Sbjct: 80 AKPSDAEAS 88
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 29.3 bits (65), Expect = 0.040
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 89 LCTFCGKGFNDTFDLKRHTRTHTGKE 114
C CGK F L H R HTG++
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.4 bits (65), Expect = 0.044
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 83 SDVKRYLCTFCGKGFNDTFDLKRHTRTHTGKE 114
S K + C +C K F L+ H R HT ++
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 28.3 bits (62), Expect = 0.11
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 52 TGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVK 86
+ F C C+K F + L H++ H++ K
Sbjct: 2 SSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 29.0 bits (64), Expect = 0.055
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 85 VKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
++ Y C+ CGK F+ ++ H R HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 25.5 bits (55), Expect = 1.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHS 83
++C +C K FSL+ + H + H+
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHT 27
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 31.3 bits (70), Expect = 0.069
Identities = 5/40 (12%), Positives = 11/40 (27%)
Query: 75 LNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGKE 114
H KR + ++ DL+ ++
Sbjct: 196 ETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 28.3 bits (63), Expect = 0.099
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 60 FACHLCSKSFSLQRLLNRHM-KCHS 83
+AC LC+++F+ + LL RH K HS
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHS 27
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.2 bits (62), Expect = 0.16
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKEEEEEEDG 121
K + C CG+ F L H H G++ G
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG 46
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 28.3 bits (62), Expect = 0.16
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 82 HSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
S K Y C CG F + H R+H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 27.6 bits (60), Expect = 0.30
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 51 TTGRKDNTRFACHLCSKSFSLQRLLNRHMKCHS 83
++G ++C +C F + ++ H++ H
Sbjct: 2 SSGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (62), Expect = 0.18
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 50 STTGRKDNTRFACHLCSKSFSLQRLLNRHMKCHS 83
S + + F C+ C K+FS + L +H + H+
Sbjct: 3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 24.0 bits (51), Expect = 4.8
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 82 HSDVKRYLCTFCGKGFNDTFDLKRHTRTHT 111
K + C C K F+ + L +H R HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 30.2 bits (67), Expect = 0.20
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 5 GLPKGVTLEFVNGGHGVKNPLANHDVSAIIPPPPPPTRVEPEKVESTTGRKDNTRFACHL 64
+ VN + + ++A+ P V + T + + + C++
Sbjct: 62 AVGDSAPSSSVNNDGDIITRPTSDSIAAVANATKPAAVVSDPQSMKVTPIVNPSSYVCNV 121
Query: 65 CSKSFSLQRLLNRHMK-CHSDV 85
C+ FS L+ H++ H D
Sbjct: 122 CNARFSTMSALSEHLRSDHRDD 143
Score = 29.0 bits (64), Expect = 0.48
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRT 109
Y+C C F+ L H R+
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRS 138
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.5 bits (60), Expect = 0.21
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHT 111
K +LC CGK F LK H HT
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHT 33
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 29.4 bits (67), Expect = 0.32
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 5 GLPKGVTLEFVNGGHGVKNPLANH-DV 30
GLP+GV L V GG L ++ D+
Sbjct: 200 GLPEGV-LSVVPGGIETGQALTSNPDI 225
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 27.9 bits (61), Expect = 0.44
Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 6/89 (6%)
Query: 35 PPPPPPTRVEPEKVESTTGRKDNTRFACHLCSK-SFSLQRLLNRHMK-CHSDVKRYLCTF 92
PP E+ D +C C L +HM+ C ++ + C
Sbjct: 12 EPPVYAAGSLEEQWYLEI--VDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEM--FTCHH 67
Query: 93 CGKGFNDTFDLKRHTRTHTGKEEEEEEDG 121
CGK +K H + G
Sbjct: 68 CGKQLRSLAGMKYHVMANHNSLPSGPSSG 96
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 26.6 bits (59), Expect = 0.49
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCH 82
+ C C + F + L HM H
Sbjct: 7 YTCSFCKREFRSAQALGGHMNVH 29
Score = 25.9 bits (57), Expect = 1.0
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTH 110
+ Y C+FC + F L H H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 26.3 bits (57), Expect = 0.64
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSD 84
+ C LC +SF + L+RH + H +
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHKN 26
Score = 23.6 bits (50), Expect = 5.2
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 88 YLCTFCGKGFNDTFDLKRHTRTH 110
Y C C + F + L RH R H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 26.0 bits (56), Expect = 0.89
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 60 FACHLCSKSFSLQRLLNRHMK 80
++C +C KSFS RL+ H+K
Sbjct: 10 YSCPVCEKSFSEDRLIKSHIK 30
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 28.0 bits (62), Expect = 1.0
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 12/56 (21%)
Query: 88 YLCTFCGKGFNDTFDLKRHTRTHT-----GKEEEE-------EEDGKTNVLTTEYL 131
Y+ F + F +R+ + T G E E DG+ L
Sbjct: 37 YIDDFTLQYFGSKKQYERYRKKCTLRHPPGNEIYRDDYVSFFEIDGRKQRTWCRNL 92
>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic
ehrlichiosis, STRE response, structural genomics; NMR
{Ehrlichia chaffeensis}
Length = 76
Score = 26.6 bits (59), Expect = 1.1
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 24 PLANHDVSAIIPPPPPPTRVEPEKVESTTGRKDNTRFACHLCSKSFSLQRLLNRH 78
+ + +I P + V S G DN ++ + S F + L +H
Sbjct: 5 TVTQSQLELLIRNAFPEAEIT---VTSLVG--DNNHYSIKVISSQFQGKSKLEQH 54
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 27.6 bits (60), Expect = 1.1
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 36 PPPPPTRVEPEKVESTTGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCG 94
+ E K E + C C + + L LLN +C + ++C C
Sbjct: 45 GLKGKIQKESSKRELLSDTAHLNETHCARCLQPYRL--LLNSRRQCL-ECSLFVCKSCS 100
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 25.6 bits (55), Expect = 1.3
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 90 CTFCGKGFNDTFDLKRHTRTHTGK 113
C CGK F + L H H G+
Sbjct: 15 CQECGKIFRHSSLLIEHQALHAGE 38
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 27.0 bits (59), Expect = 1.7
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Query: 35 PPPPPPTRVEPEKVESTTGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCG 94
P ++E +E + C C + F + +N H+ ++ C C
Sbjct: 86 PNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCA 144
Query: 95 KGFNDTFDLKRHTRT 109
D + H +
Sbjct: 145 ASMAFE-DKEIHDQN 158
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 25.1 bits (54), Expect = 1.8
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 82 HSDVKRYLCTFCGKGFNDTFDLKRHTRTHT 111
S + ++C C F + RH + HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 24.7 bits (53), Expect = 2.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 53 GRKDNTRFACHLCSKSFSLQRLLNRHMKCHSD 84
G F C +C +F+ + RH+K H+D
Sbjct: 1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 25.5 bits (55), Expect = 1.9
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKEEEEEEDGKT 123
K Y C CGK + + L H H+ EEE ED +
Sbjct: 6 KPYACDICGKRYKNRPGLSYH-YAHSHLAEEEGEDKED 42
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 27.1 bits (61), Expect = 2.2
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 5 GLPKGVTLEFVNGGHGVKNPLANH-DVSAI 33
G+P G+ + V GG + L +H +V+ +
Sbjct: 209 GVPVGL-VNVVQGGAETGSLLCHHPNVAKV 237
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 25.3 bits (54), Expect = 2.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGK 113
KRY C+ C FN L +H +TH K
Sbjct: 11 KRYECSKCQATFNLRKHLIQHQKTHAAK 38
Score = 24.9 bits (53), Expect = 2.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 59 RFACHLCSKSFSLQRLLNRHMKCHS 83
R+ C C +F+L++ L +H K H+
Sbjct: 12 RYECSKCQATFNLRKHLIQHQKTHA 36
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 26.2 bits (57), Expect = 2.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 87 RYLCTFCGKGFNDTFDLKRHTRT 109
+ C C + F D+ +LK H R+
Sbjct: 50 LHRCLACARYFIDSTNLKTHFRS 72
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 24.7 bits (53), Expect = 2.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTH 110
K Y+C CGK F + L H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.7 bits (53), Expect = 2.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 60 FACHLCSKSFSLQRLLNRHMKCHSD 84
+ CH+C + F + +RHM H D
Sbjct: 10 YDCHICERKFKNELDRDRHMLVHGD 34
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B;
phosphoinositide binding, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 84
Score = 25.6 bits (56), Expect = 2.9
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 12/43 (27%)
Query: 55 KDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGF 97
N C CS +FS +L + + C+ CG F
Sbjct: 10 PTNNFGNCTGCSATFS---VLKK--RRS-------CSNCGNSF 40
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR
{Thermoplasma acidophilum} PDB: 2k22_A
Length = 90
Score = 25.5 bits (56), Expect = 3.0
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 108 RTHTGKEEEEEEDGKT 123
R T K+EE
Sbjct: 11 RPITKKKEETFNGISK 26
>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A
{Coxiella burnetii}
Length = 82
Score = 25.0 bits (55), Expect = 3.8
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 44 EPEKVESTTGRKDNTRFACHLCSKSFSLQRLLNRH 78
+V S G D F + +F Q L RH
Sbjct: 19 SESRVISAEG--DGHHFEAVVLCPTFEGQTALTRH 51
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 24.0 bits (51), Expect = 4.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKEE 115
K Y C +C D+ +LK H +T KE+
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 25.7 bits (57), Expect = 4.9
Identities = 6/50 (12%), Positives = 15/50 (30%), Gaps = 6/50 (12%)
Query: 37 PPPPTRVEPEKVESTTGRKDNTRFACHLCSKSFSLQRLL------NRHMK 80
P + + + D T + C++C + + H+
Sbjct: 338 PKALEELLSKGETTMKKLDDWTHYTCNVCRNADGKNVVAIGEKYWKIHLG 387
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger,
ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding
protein, USP; NMR {Homo sapiens}
Length = 126
Score = 25.4 bits (55), Expect = 5.5
Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Query: 48 VESTTGRKDNTRFACHLCSKSFSLQRLLNRH-MKCHSDVKRYLCTFCGKGFNDTFDLKRH 106
+E +K ++C + ++ ++ + +LC CG ++H
Sbjct: 14 LEQGNLKKALVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQH 73
Query: 107 TRTHTGKEEEE 117
H E
Sbjct: 74 ALKHYLTPRSE 84
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG,
protein structure initiative, PSI, joint center for
structural genomics; 1.83A {Mus musculus} SCOP:
d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Length = 350
Score = 25.8 bits (56), Expect = 5.7
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 7/57 (12%)
Query: 27 NHDVSAIIPPPPPPTRVE-------PEKVESTTGRKDNTRFACHLCSKSFSLQRLLN 76
+H A P R + P E G + T L F +Q++L
Sbjct: 9 HHHHMADTAPQLKRKREQEAEEAETPSTEEKEAGVGNGTSAPVRLPFSGFRVQKVLR 65
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 146
Score = 25.2 bits (55), Expect = 5.9
Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 33 IIPPPPPPTRVEPEKVESTTGRKDNTRFACHLCSKSFSLQRLLNR 77
++PP P G + + + + L++ +N+
Sbjct: 70 VVPPLPGKALKRQLPFRGDEGIFEES----FIEERRQGLEQFINK 110
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 25.4 bits (55), Expect = 6.7
Identities = 11/56 (19%), Positives = 13/56 (23%), Gaps = 11/56 (19%)
Query: 41 TRVEPEKVESTTGRKDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKR--YLCTFCG 94
TR +K G N C C K +C CG
Sbjct: 3 TRESIDKRAGRRGPNLNIVLTCPECK---------VYPPKIVERFSEGDVVCALCG 49
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein,
structural genomics, PSI- 2, protein structure
initiative; 3.00A {Corynebacterium diphtheriae}
Length = 583
Score = 25.7 bits (56), Expect = 6.7
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 5 GLPKGVTLEFVNGGHGVKNP-LAN 27
G P +T E V + P LA+
Sbjct: 338 GFPAAITSENVLSNRAARYPALAD 361
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 24.0 bits (51), Expect = 7.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 90 CTFCGKGFNDTFDLKRHTRTH 110
C CGK F D L++H H
Sbjct: 16 CGLCGKVFTDANRLRQHEAQH 36
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 23.6 bits (50), Expect = 7.3
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 51 TTGRKDNTRFACHLCSKSFSLQRLLNRHM-KCHSD 84
++G N F C+ C FS + L RH + HSD
Sbjct: 2 SSGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSD 36
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 24.9 bits (53), Expect = 7.6
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 35 PPPPPPTRVEPEKVESTTGRKDNTRFACHLCSKSFSLQRLLNRHMK 80
P + + +D ++ C +C+ +FS + H
Sbjct: 70 GEDSVPAKKFKAAPAEISDGEDRSKC-CPVCNMTFSSPVVAESHYI 114
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics,
structural genomics consortium, SGC; HET: COA; 1.45A
{Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A*
3tob_A*
Length = 278
Score = 25.3 bits (55), Expect = 8.1
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 12/56 (21%)
Query: 88 YLCTFCGKGFNDTFDLKRHTRTHT-----GKEEEE-------EEDGKTNVLTTEYL 131
+LC +C K + H GKE E DGK + + + L
Sbjct: 37 WLCEYCLKYMKYEKSYRFHLGQCQWRQPPGKEIYRKSNISVHEVDGKDHKIYCQNL 92
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.3 bits (49), Expect = 8.2
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 86 KRYLCTFCGKGFNDTFDLKRHTRTHTGKE 114
K Y C C +L H R HTG++
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>3hhc_A Interleukin-28B; interferon, IL-22, antiviral, antiviral defense,
cytokine, secreted; 2.80A {Homo sapiens}
Length = 196
Score = 25.2 bits (54), Expect = 8.2
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 37 PPPPTRVEPEKVESTTGRKDNTRFACHLCSKSFSLQRLLNRHMKC 81
P R+ K + C S +F+L RLL R + C
Sbjct: 145 PRTRGRLHHWLHRLQEAPKKESP-GCLEASVTFNLFRLLTRDLNC 188
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics,
structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB:
2yqm_A
Length = 82
Score = 24.3 bits (53), Expect = 8.4
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 12/43 (27%)
Query: 55 KDNTRFACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGF 97
KD+ C C K FS+ R +H H C CG F
Sbjct: 15 KDDEATHCRQCEKEFSISR--RKH---H-------CRNCGHIF 45
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 25.0 bits (54), Expect = 8.5
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 60 FACHLCSKSFSLQRLLNRHMK--CHSD-VKRY--LCTFCGKGF 97
F C C KS L ++ + C K + G+G
Sbjct: 143 FRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGA 185
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 24.8 bits (54), Expect = 8.6
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 7/60 (11%)
Query: 60 FACHLCSKSFSL--QRLLNRHMK-----CHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 112
FAC +C + + + L + + K+ G T + H G
Sbjct: 94 FACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGSGGSGGSGGGTPMVAASPERHDG 153
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein
VPS27; endosome maturation, intracellular trafficking;
1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Length = 73
Score = 23.9 bits (52), Expect = 8.7
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 12/37 (32%)
Query: 61 ACHLCSKSFSLQRLLNRHMKCHSDVKRYLCTFCGKGF 97
AC +CSK FSL L +H H C CG F
Sbjct: 13 ACMICSKKFSL--LNRKH---H-------CRSCGGVF 37
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural
genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo
sapiens}
Length = 280
Score = 24.9 bits (54), Expect = 8.9
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 88 YLCTFCGKGFNDTFDLKRHTRTHTGK 113
YLC FC K L+RH +
Sbjct: 35 YLCEFCLKYGRSLKCLQRHLTKCDLR 60
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Length = 37
Score = 23.2 bits (49), Expect = 8.9
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 83 SDVKRYLCTFCGKGFNDTFDLKRHTR 108
S +K++ C FC K ++D +L +H R
Sbjct: 6 SGIKQH-CRFCKKKYSDVKNLIKHIR 30
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated
deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens}
PDB: 3rzu_A
Length = 211
Score = 25.0 bits (54), Expect = 9.2
Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 13/107 (12%)
Query: 24 PLANHDVSAIIPPPPPPTRVEPEKVESTTGRKDNTRFACHLCSKSFSLQRLLNRHMKCH- 82
PL + D + P PP K + + + + + L
Sbjct: 2 PLGSSDCHTTVRPAKPPVVDRSLKPGALSNSESI---PTIDGLRHVVVPGRLCPQFLQLA 58
Query: 83 -SDVKRYLCT---FCGKGFNDTF-----DLKRHTRTHTGKEEEEEED 120
++ R + T CGK + F + + + E EE+
Sbjct: 59 SANTARGVATCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEE 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.419
Gapped
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,141,003
Number of extensions: 116218
Number of successful extensions: 1049
Number of sequences better than 10.0: 1
Number of HSP's gapped: 886
Number of HSP's successfully gapped: 417
Length of query: 134
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 51
Effective length of database: 4,384,350
Effective search space: 223601850
Effective search space used: 223601850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)