BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6910
(1145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 149 bits (377), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 71/109 (65%), Positives = 88/109 (80%), Gaps = 1/109 (0%)
Query: 424 FFTLNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTG 483
FFT NP EL G+ IH+ L KS RG GFT+VGGD+ +EFLQIKS+V +GPAAL+G ++TG
Sbjct: 7 FFTRNPSELKGKFIHTKLRKSSRGFGFTVVGGDEP-DEFLQIKSLVLDGPAALDGKMETG 65
Query: 484 DVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDP 532
DV+V VND CVLG+TH +V +FQSI G +V LE+CRGYPLPFDP+DP
Sbjct: 66 DVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDDP 114
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
++ +L + +RGFGF++ GG E + L + + +GPAALDG ++ GD IV +N
Sbjct: 18 KFIHTKLRKSSRGFGFTVVGGDE-PDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCV 76
Query: 1092 KNMTHAEAIEIIRN 1105
THA+ ++I ++
Sbjct: 77 LGHTHAQVVKIFQS 90
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%)
Query: 825 LLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXXXXXXHHH 884
L + GFGF +VGG E + I +V G A LDG++ TGD I H
Sbjct: 24 LRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQ 83
Query: 885 VVELMGKASVYGRVTLGIRR 904
VV++ + V L + R
Sbjct: 84 VVKIFQSIPIGASVDLELCR 103
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 924 TITRRENEGFGFVIISSLNK-AGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHH 982
T R+ + GFGF ++ I ++ D PA G++ GD I++VN ++ H
Sbjct: 22 TKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH 81
Query: 983 GEIVNLIKDSGYCVTLTIGAPI 1004
++V + + ++ IGA +
Sbjct: 82 AQVVKIFQ------SIPIGASV 97
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 85/109 (77%), Gaps = 1/109 (0%)
Query: 424 FFTLNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTG 483
FT + +L G + ++L KS G GFTI+GGD+ +EFLQ+KSV+P+GPAA +G ++TG
Sbjct: 8 LFTRDASQLKGTFLSTTLKKSNMGFGFTIIGGDE-PDEFLQVKSVIPDGPAAQDGKMETG 66
Query: 484 DVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDP 532
DV+VY+N+ CVLG+TH D+V +FQS+ G++V L +CRGYPLPFDP DP
Sbjct: 67 DVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDP 115
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 1033 YHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTK 1092
+ + L + GFGF+I GG E + L V + +GPAA DG ++ GD IV IN +
Sbjct: 20 FLSTTLKKSNMGFGFTIIGGDE-PDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVL 78
Query: 1093 NMTHAEAIEIIRNG--DSTVRLLIKRG 1117
THA+ +++ ++ +V L++ RG
Sbjct: 79 GHTHADVVKLFQSVPIGQSVNLVLCRG 105
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%)
Query: 824 TLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXXXXXXHH 883
TL + GFGF I+GG E + + ++P G A DG++ TGD I H
Sbjct: 24 TLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHA 83
Query: 884 HVVELMGKASVYGRVTLGIRR 904
VV+L + V L + R
Sbjct: 84 DVVKLFQSVPIGQSVNLVLCR 104
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 924 TITRRENEGFGFVIISSLNK-AGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHH 982
T ++ N GFGF II + +I D PA + G++ GD I+ +N V ++ H
Sbjct: 23 TTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTH 82
Query: 983 GEIVNLIK 990
++V L +
Sbjct: 83 ADVVKLFQ 90
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 598 YLTIPIVKGAMGFGFTIADSSHGQ---KVKKIL-DRQRCKN--LAEGDILIEINNLNVRN 651
+L+ + K MGFGFTI +VK ++ D ++ + GD+++ IN + V
Sbjct: 20 FLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLG 79
Query: 652 MCHGEVVQVLKDCQRNLEANIIVQR 676
H +VV++ + N+++ R
Sbjct: 80 HTHADVVKLFQSVPIGQSVNLVLCR 104
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 112 bits (279), Expect = 1e-24, Method: Composition-based stats.
Identities = 53/85 (62%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
Query: 437 IHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
IH+ L KS RG GFT+VGGD+ +EFLQIKS+V +GPAAL+G ++TGDV+V VND CVLG
Sbjct: 2 IHTKLRKSSRGFGFTVVGGDEP-DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLG 60
Query: 497 YTHHDMVSVFQSISPGETVQLEVCR 521
+TH +V +FQSI G +V LE+CR
Sbjct: 61 HTHAQVVKIFQSIPIGASVDLELCR 85
Score = 53.1 bits (126), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 1037 ELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTH 1096
+L + +RGFGF++ GG E L + + +GPAALDG ++ GD IV +N TH
Sbjct: 5 KLRKSSRGFGFTVVGGDEPDEF-LQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH 63
Query: 1097 AEAIEIIRN 1105
A+ ++I ++
Sbjct: 64 AQVVKIFQS 72
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 36/80 (45%)
Query: 825 LLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXXXXXXHHH 884
L + GFGF +VGG E + I +V G A LDG++ TGD I H
Sbjct: 6 LRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQ 65
Query: 885 VVELMGKASVYGRVTLGIRR 904
VV++ + V L + R
Sbjct: 66 VVKIFQSIPIGASVDLELCR 85
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 924 TITRRENEGFGFVIISSLN-KAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHH 982
T R+ + GFGF ++ I ++ D PA G++ GD I++VN ++ H
Sbjct: 4 TKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH 63
Query: 983 GEIVNLIKDSGYCVTLTIGAPI 1004
++V + + ++ IGA +
Sbjct: 64 AQVVKIFQ------SIPIGASV 79
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
Query: 1033 YHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTK 1092
++ +EL RG +GFGFS+RGGRE+ NM L+VL++AE+GPA G +++GDEI+EING TK
Sbjct: 25 FYTVELERGAKGFGFSLRGGREY-NMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTK 83
Query: 1093 NMTHAEAIEIIRNGDSTVRLLIKRGGSVV 1121
NM H+ AIE+I+NG VRL +KRG + V
Sbjct: 84 NMKHSRAIELIKNGGRRVRLFLKRGETSV 112
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 950 RIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
R+ ED PA+RSG++ +GD IL +N ++ H + LIK+ G V L +
Sbjct: 55 RLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFL 105
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 819 DVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXXX 878
D + L R GFGF + GG E + + + G A+ G++ GDEI
Sbjct: 24 DFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTK 83
Query: 879 XXXHHHVVELMGKASVYGRVTLGIRR 904
H +EL+ RV L ++R
Sbjct: 84 NMKHSRAIELIKNGGR--RVRLFLKR 107
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 597 EYLTIPIVKGAMGFGFTIADSSHGQKVKKILD------RQRCKNLAEGDILIEINNLNVR 650
++ T+ + +GA GFGF++ +L +R + GD ++EIN +
Sbjct: 24 DFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTK 83
Query: 651 NMCHGEVVQVLKDCQRNL 668
NM H ++++K+ R +
Sbjct: 84 NMKHSRAIELIKNGGRRV 101
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
L + +G GF++ GG + + L + + +GPA G ++ GD ++ +N + H
Sbjct: 30 LERGAKGFGFSLRGGREYNMD-LYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHS 88
Query: 501 DMVSVFQSISPGETVQLEVCRG 522
+ + + + G V+L + RG
Sbjct: 89 RAIELIK--NGGRRVRLFLKRG 108
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human Membrane
Associated Guanylate Kinase Inverted-2 (Kiaa0705 Protein)
Length = 103
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Query: 1029 HDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEING 1088
D Y +++ +G +GFGFSIRGGRE++ M L+VL++AE+GPA +G ++VGD+I+EING
Sbjct: 8 QDFDYFTVDMEKGAKGFGFSIRGGREYK-MDLYVLRLAEDGPAIRNGRMRVGDQIIEING 66
Query: 1089 INTKNMTHAEAIEIIRNGDSTVRLLIKRG 1117
+T++MTHA AIE+I++G VRLL+KRG
Sbjct: 67 ESTRDMTHARAIELIKSGGRRVRLLLKRG 95
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 919 YPYDVTITRRENEGFGFVIISSLN-KAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDI 977
+ Y + +GFGF I K + R+ ED PA R+G + +GD I+ +N
Sbjct: 10 FDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGEST 69
Query: 978 MSLHHGEIVNLIKDSGYCVTLTI 1000
+ H + LIK G V L +
Sbjct: 70 RDMTHARAIELIKSGGRRVRLLL 92
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 595 DSEYLTIPIVKGAMGFGFTIADSSHGQKVKKILDRQ------RCKNLAEGDILIEINNLN 648
D +Y T+ + KGA GFGF+I + +L R + GD +IEIN +
Sbjct: 9 DFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGES 68
Query: 649 VRNMCHGEVVQVLKDCQRNLE 669
R+M H ++++K R +
Sbjct: 69 TRDMTHARAIELIKSGGRRVR 89
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 443 KSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
K +G GF+I GG + K + L + + +GPA G ++ GD ++ +N + TH
Sbjct: 19 KGAKGFGFSIRGGREYKMD-LYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARA 77
Query: 503 VSVFQSISPGETVQLEVCRG 522
+ + + S G V+L + RG
Sbjct: 78 IELIK--SGGRRVRLLLKRG 95
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 819 DVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXXX 878
D + + + GFGF I GG E + + + G A +GR+ GD+I
Sbjct: 11 DYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTR 70
Query: 879 XXXHHHVVELM 889
H +EL+
Sbjct: 71 DMTHARAIELI 81
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 145/339 (42%), Gaps = 59/339 (17%)
Query: 823 ITLLRQENGFGFRIVGGTE-----EGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXX 877
ITL R +G GF I GGT+ + + I I+PGGAA DGRL D I
Sbjct: 63 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 122
Query: 878 XXXXHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSMMLGYPYDVTITRRENEGFGFVI 937
H VE + +A R+ + +RRK PPAE ++ + + +G GF I
Sbjct: 123 REVTHSAAVEALKEAGSIVRLYV-MRRK--PPAEKV-------MEIKLIKGP-KGLGFSI 171
Query: 938 ISSLNKA------GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKD 991
+ + +IIE A + G L +GD ILAVN V + + H + V +K+
Sbjct: 172 AGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKN 231
Query: 992 SGYCVTLTIGAP----ISGDDXXXXXXXXXXXHREYEEG--------------------- 1026
+ V L + P +S H + E
Sbjct: 232 TYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRY 291
Query: 1027 --------GEHD--EQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGH 1076
GE D + I + RG+ G GF+I GG + + +F+ I GPA L G
Sbjct: 292 SPVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGE--GIFISFILAGGPADLSGE 349
Query: 1077 LKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIK 1115
L+ GD+I+ +NG++ +N +H +A ++N TV ++ +
Sbjct: 350 LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQ 388
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 33/206 (16%)
Query: 921 YDVTITRRENEGFGFVIISSLNKA------GSTIGRIIEDSPADRSGELHLGDHILAVNH 974
Y+ R N G GF I + I +II A + G L + D IL VN
Sbjct: 60 YEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNE 119
Query: 975 VDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDXXXXXXXXXXXHREYEEGGEHDEQYH 1034
VD+ + H V +K++G V L + R+ E+
Sbjct: 120 VDVREVTHSAAVEALKEAGSIVRLYV------------------MRRKPPA-----EKVM 156
Query: 1035 AIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEINGIN 1090
I+L +G +G GFSI GG Q++ +++V +I E G A DG L++GD+I+ +N +
Sbjct: 157 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG 216
Query: 1091 TKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+++ H +A+ ++N V L + +
Sbjct: 217 LEDVMHEDAVAALKNTYDVVYLKVAK 242
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Query: 1023 YEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLK 1078
Y G E + +Y I L RG G GFSI GG + ++ ++F+ +I G AA DG L+
Sbjct: 50 YVNGTEGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLR 109
Query: 1079 VGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
V D I+ +N ++ + +TH+ A+E ++ S VRL + R
Sbjct: 110 VNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR 147
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 44/254 (17%)
Query: 441 LVKSLRGLGFTIVGGDDSK----EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
L+K +GLGF+I GG ++ + + + ++ G A +G LQ GD ++ VN +
Sbjct: 160 LIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLED 219
Query: 497 YTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDPXXXXXXXXXXXXPDLDNGSDRHL- 555
H D V+ ++ + V L+V + P++ PD+ +HL
Sbjct: 220 VMHEDAVAALKNTY--DVVYLKVAK-------PSN----AYLSDSYAPPDITTSYSQHLD 266
Query: 556 -------YMSANDFTDQSVKSMPDLYTSEKMVKLERPSSTDLILESD--SEYLTIPIVKG 606
Y+ D+ + P Y+ P + DL+ E D E I I +G
Sbjct: 267 NEISHSSYL-GTDYPTAMTPTSPRRYS---------PVAKDLLGEEDIPREPRRIVIHRG 316
Query: 607 AMGFGFTIADSSHGQK--VKKILD---RQRCKNLAEGDILIEINNLNVRNMCHGEVVQVL 661
+ G GF I G+ + IL L +GD ++ +N +++RN H + L
Sbjct: 317 STGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL 376
Query: 662 KDCQRNLEANIIVQ 675
K+ + + II Q
Sbjct: 377 KNAGQTV--TIIAQ 388
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 447 GLGFTIVGGDDS----KEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
GLGF+I GG D+ + + I ++P G AA +G L+ D +++VN+ V TH
Sbjct: 71 GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAA 130
Query: 503 VSVFQSISPGETVQLEVCRGYP 524
V + G V+L V R P
Sbjct: 131 VEALK--EAGSIVRLYVMRRKP 150
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 20/120 (16%)
Query: 593 ESDSEYLTIPIVKGAMGFGFTIA---DSSH-----GQKVKKILDRQRCKN---LAEGDIL 641
E + EY I + +G G GF+IA D+ H + KI+ L D +
Sbjct: 55 EGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSI 114
Query: 642 IEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKTPTEMYTRPK 701
+ +N ++VR + H V+ LK EA IV RL + PP ++ PK
Sbjct: 115 LFVNEVDVREVTHSAAVEALK------EAGSIV---RLYVMRRKPPAEKVMEIKLIKGPK 165
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 599 LTIPIVKGAMGFGFTIADSSHGQK--------VKKILD---RQRCKNLAEGDILIEINNL 647
+ I ++KG G GF+IA Q V KI++ + L GD ++ +N++
Sbjct: 156 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSV 215
Query: 648 NVRNMCHGEVVQVLKD 663
+ ++ H + V LK+
Sbjct: 216 GLEDVMHEDAVAALKN 231
>pdb|1UJV|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2 (Magi-2)
Length = 96
Score = 97.4 bits (241), Expect = 4e-20, Method: Composition-based stats.
Identities = 46/81 (56%), Positives = 60/81 (74%)
Query: 596 SEYLTIPIVKGAMGFGFTIADSSHGQKVKKILDRQRCKNLAEGDILIEINNLNVRNMCHG 655
+E +T+ IVKGA GFGFTIADS GQ+VK+ILD Q C L EGD+++EIN NV+N+ H
Sbjct: 9 AELMTLTIVKGAQGFGFTIADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQNLSHT 68
Query: 656 EVVQVLKDCQRNLEANIIVQR 676
EVV +LKDC E ++I+ R
Sbjct: 69 EVVDILKDCPIGSETSLIIHR 89
Score = 38.1 bits (87), Expect = 0.032, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 1026 GGEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVE 1085
G + + + +G +GFGF+I Q + +L I + P +G D IVE
Sbjct: 4 GSSGQAELMTLTIVKGAQGFGFTIADSPTGQRVKQ-ILDI-QGCPGLCEG-----DLIVE 56
Query: 1086 INGINTKNMTHAEAIEIIRNG--DSTVRLLIKRG 1117
IN N +N++H E ++I+++ S L+I RG
Sbjct: 57 INQQNVQNLSHTEVVDILKDCPIGSETSLIIHRG 90
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 931 EGFGFVIISSLNKAGSTIGRI--IEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNL 988
+GFGF I S G + +I I+ P L GD I+ +N ++ +L H E+V++
Sbjct: 21 QGFGFTIADS--PTGQRVKQILDIQGCPG-----LCEGDLIVEINQQNVQNLSHTEVVDI 73
Query: 989 IKD 991
+KD
Sbjct: 74 LKD 76
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 63/87 (72%), Gaps = 8/87 (9%)
Query: 922 DVTITRRENEGFGFVIISSLNK--AGSTI------GRIIEDSPADRSGELHLGDHILAVN 973
DV I R+ENEGFGFVIISSLN+ +GSTI GRII+ SPADR +L +GD ILAVN
Sbjct: 13 DVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVN 72
Query: 974 HVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
I+++ H +IV LIKD+G VTL I
Sbjct: 73 GQSIINMPHADIVKLIKDAGLSVTLRI 99
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 609 GFGFTIADS----------SHGQKVKKILD---RQRCKNLAEGDILIEINNLNVRNMCHG 655
GFGF I S + K+ +I+D RC L GD ++ +N ++ NM H
Sbjct: 23 GFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHA 82
Query: 656 EVVQVLKDCQRNLEANIIVQ 675
++V+++KD ++ II Q
Sbjct: 83 DIVKLIKDAGLSVTLRIIPQ 102
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 1064 QIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLI 1114
+I + PA LKVGD I+ +NG + NM HA+ +++I++ +V L I
Sbjct: 49 RIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRI 99
>pdb|3SOE|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of The Human
Membrane- Associated Guanylate Kinase, Ww And Pdz
Domain-Containing Protein 3 (Magi3)
Length = 113
Score = 81.6 bits (200), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 7/94 (7%)
Query: 599 LTIPIVKGAMGFGFTIADSSHGQKVKKILDRQRCKNLAEGDILIEINNLNVRNMCHGEVV 658
+TIP++KG GFGF IADS GQKVK ILD Q C+ L +GDI+ EI + NV+N+ H +VV
Sbjct: 14 VTIPLIKGPKGFGFAIADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLTHLQVV 73
Query: 659 QVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKT 692
+VLK + +++ R PP +KT
Sbjct: 74 EVLKQFPVGADVPLLILRG-------GPPSPTKT 100
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
I L +G +GFGF+I Q + + + G L+ GD I EI N +N+T
Sbjct: 16 IPLIKGPKGFGFAIADSPTGQKVKMILDSQWCQG-------LQKGDIIKEIYHQNVQNLT 68
Query: 1096 HAEAIEIIRNG--DSTVRLLIKRGGSVVAPTDNA 1127
H + +E+++ + V LLI RGG +PT A
Sbjct: 69 HLQVVEVLKQFPVGADVPLLILRGGP-PSPTKTA 101
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
L+K +G GF I ++ + + S G LQ GD++ + + V TH
Sbjct: 18 LIKGPKGFGFAIADSPTGQKVKMILDSQWCQG-------LQKGDIIKEIYHQNVQNLTHL 70
Query: 501 DMVSVFQSISPGETVQLEVCRGYP 524
+V V + G V L + RG P
Sbjct: 71 QVVEVLKQFPVGADVPLLILRGGP 94
>pdb|3BPU|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Membrane
Associated Guanylate Kinase, C677s And C709s Double
Mutant
Length = 88
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Query: 597 EYLTIPIVKGAMGFGFTIADS--SHGQKVKKILDRQRCKNLAEGDILIEINNLNVRNMCH 654
E +T+ IVKG MGFGFTIADS GQ+VK+I+D R + L EGD+++E+N NV+ + H
Sbjct: 3 ELITVHIVKGPMGFGFTIADSPGGGGQRVKQIVDSPRSRGLKEGDLIVEVNKKNVQALTH 62
Query: 655 GEVVQVLKDCQRNLEANIIVQR 676
+VV +L + + E ++VQR
Sbjct: 63 NQVVDMLVESPKGSEVTLLVQR 84
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 17/89 (19%)
Query: 1035 AIELSRGTRGFGFSIR-----GGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGI 1089
+ + +G GFGF+I GG+ + + + P + LK GD IVE+N
Sbjct: 6 TVHIVKGPMGFGFTIADSPGGGGQRVKQIV--------DSPRSRG--LKEGDLIVEVNKK 55
Query: 1090 NTKNMTHAEAIEIIRNG--DSTVRLLIKR 1116
N + +TH + ++++ S V LL++R
Sbjct: 56 NVQALTHNQVVDMLVESPKGSEVTLLVQR 84
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 435 ERIHSSLVKSLRGLGFTIV---GGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVND 491
E I +VK G GFTI GG + +K +V + P + L+ GD++V VN
Sbjct: 3 ELITVHIVKGPMGFGFTIADSPGGGGQR-----VKQIV-DSPRSR--GLKEGDLIVEVNK 54
Query: 492 KCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
K V TH+ +V + G V L V R
Sbjct: 55 KNVQALTHNQVVDMLVESPKGSEVTLLVQR 84
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 80.1 bits (196), Expect = 6e-15, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 51/82 (62%)
Query: 823 ITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXXXXXXH 882
I L R+E GFGFRI+GG E G + IGHIVP GAAD DGRL +GDE+ H
Sbjct: 6 IFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSH 65
Query: 883 HHVVELMGKASVYGRVTLGIRR 904
VV+LM +A+ G V L +R+
Sbjct: 66 QLVVQLMQQAAKQGHVNLTVRQ 87
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
G GF I+GG++ E + I +VP G A +G L++GD L+ V+ V+G +H +V +
Sbjct: 14 GFGFRILGGNEPGEP-IYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLM 72
Query: 507 QSISPGETVQLEV 519
Q + V L V
Sbjct: 73 QQAAKQGHVNLTV 85
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
I L R GFGF I GG E +++ I G A DG L+ GDE++ ++G +
Sbjct: 6 IFLWRKETGFGFRILGGNE-PGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKS 64
Query: 1096 HAEAIEIIRNG 1106
H +++++
Sbjct: 65 HQLVVQLMQQA 75
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 45/212 (21%)
Query: 921 YDVTITRRENEGFGFVIISSLNKAGST------------IGRIIEDSPADRSGELHLGDH 968
Y+ R N G GF I AG T I +II A + G L + D
Sbjct: 6 YEEITLERGNSGLGFSI------AGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDS 59
Query: 969 ILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDXXXXXXXXXXXHREYEEGGE 1028
IL VN VD+ + H V +K++G V L + R+
Sbjct: 60 ILFVNEVDVREVTHSAAVEALKEAGSIVRLYV------------------MRRKPPA--- 98
Query: 1029 HDEQYHAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIV 1084
E+ I+L +G +G GFSI GG Q++ +++V +I E G A DG L++GD+I+
Sbjct: 99 --EKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKIL 156
Query: 1085 EINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+N + +++ H +A+ ++N V L + +
Sbjct: 157 AVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 188
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 92/201 (45%), Gaps = 25/201 (12%)
Query: 814 SVEYSDVMVITLLRQENGFGFRIVGGTE-----EGSQVSIGHIVPGGAADLDGRLCTGDE 868
S+EY + ITL R +G GF I GGT+ + + I I+PGGAA DGRL D
Sbjct: 3 SMEYEE---ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDS 59
Query: 869 IXXXXXXXXXXXXHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSMMLGYPYDVTITRR 928
I H VE + +A R+ + +RRK PPAE ++ + +
Sbjct: 60 ILFVNEVDVREVTHSAAVEALKEAGSIVRLYV-MRRK--PPAEKV-------MEIKLIKG 109
Query: 929 ENEGFGFVIISSLNKA------GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHH 982
+G GF I + + +IIE A + G L +GD ILAVN V + + H
Sbjct: 110 P-KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMH 168
Query: 983 GEIVNLIKDSGYCVTLTIGAP 1003
+ V +K++ V L + P
Sbjct: 169 EDAVAALKNTYDVVYLKVAKP 189
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEIN 1087
+Y I L RG G GFSI GG + ++ ++F+ +I G AA DG L+V D I+ +N
Sbjct: 5 EYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN 64
Query: 1088 GINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
++ + +TH+ A+E ++ S VRL + R
Sbjct: 65 EVDVREVTHSAAVEALKEAGSIVRLYVMR 93
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 447 GLGFTIVGGDDS----KEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
GLGF+I GG D+ + + I ++P G AA +G L+ D +++VN+ V TH
Sbjct: 17 GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAA 76
Query: 503 VSVFQSISPGETVQLEVCRGYP 524
V + G V+L V R P
Sbjct: 77 VEALK--EAGSIVRLYVMRRKP 96
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 441 LVKSLRGLGFTIVGGDDSK----EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
L+K +GLGF+I GG ++ + + + ++ G A +G LQ GD ++ VN +
Sbjct: 106 LIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLED 165
Query: 497 YTHHDMVSVFQSISPGETVQLEVCR 521
H D V+ ++ + V L+V +
Sbjct: 166 VMHEDAVAALKNTY--DVVYLKVAK 188
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 597 EYLTIPIVKGAMGFGFTIADSSHGQK--------VKKILD---RQRCKNLAEGDILIEIN 645
+ + I ++KG G GF+IA Q V KI++ + L GD ++ +N
Sbjct: 100 KVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVN 159
Query: 646 NLNVRNMCHGEVVQVLKDC 664
++ + ++ H + V LK+
Sbjct: 160 SVGLEDVMHEDAVAALKNT 178
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 20/116 (17%)
Query: 597 EYLTIPIVKGAMGFGFTIA---DSSH-----GQKVKKILDRQRCKN---LAEGDILIEIN 645
EY I + +G G GF+IA D+ H + KI+ L D ++ +N
Sbjct: 5 EYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN 64
Query: 646 NLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKTPTEMYTRPK 701
++VR + H V+ LK EA IV RL + PP ++ PK
Sbjct: 65 EVDVREVTHSAAVEALK------EAGSIV---RLYVMRRKPPAEKVMEIKLIKGPK 111
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 45/212 (21%)
Query: 921 YDVTITRRENEGFGFVIISSLNKAGST------------IGRIIEDSPADRSGELHLGDH 968
Y+ R N G GF I AG T I +II A + G L + D
Sbjct: 3 YEEITLERGNSGLGFSI------AGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDS 56
Query: 969 ILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDXXXXXXXXXXXHREYEEGGE 1028
IL VN VD+ + H V +K++G V L + R+
Sbjct: 57 ILFVNEVDVREVTHSAAVEALKEAGSIVRLYV------------------MRRKPPA--- 95
Query: 1029 HDEQYHAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIV 1084
E+ I+L +G +G GFSI GG Q++ +++V +I E G A DG L++GD+I+
Sbjct: 96 --EKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKIL 153
Query: 1085 EINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+N + +++ H +A+ ++N V L + +
Sbjct: 154 AVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 185
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 87/192 (45%), Gaps = 22/192 (11%)
Query: 823 ITLLRQENGFGFRIVGGTE-----EGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXX 877
ITL R +G GF I GGT+ + + I I+PGGAA DGRL D I
Sbjct: 6 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 65
Query: 878 XXXXHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSMMLGYPYDVTITRRENEGFGFVI 937
H VE + +A R+ + +RRK PPAE ++ + + +G GF I
Sbjct: 66 REVTHSAAVEALKEAGSIVRLYV-MRRK--PPAEKV-------MEIKLIKGP-KGLGFSI 114
Query: 938 ISSLNKA------GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKD 991
+ + +IIE A + G L +GD ILAVN V + + H + V +K+
Sbjct: 115 AGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKN 174
Query: 992 SGYCVTLTIGAP 1003
+ V L + P
Sbjct: 175 TYDVVYLKVAKP 186
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEIN 1087
+Y I L RG G GFSI GG + ++ ++F+ +I G AA DG L+V D I+ +N
Sbjct: 2 EYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN 61
Query: 1088 GINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
++ + +TH+ A+E ++ S VRL + R
Sbjct: 62 EVDVREVTHSAAVEALKEAGSIVRLYVMR 90
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 447 GLGFTIVGGDDS----KEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
GLGF+I GG D+ + + I ++P G AA +G L+ D +++VN+ V TH
Sbjct: 14 GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAA 73
Query: 503 VSVFQSISPGETVQLEVCRGYP 524
V + G V+L V R P
Sbjct: 74 VEALK--EAGSIVRLYVMRRKP 93
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 441 LVKSLRGLGFTIVGGDDSK----EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
L+K +GLGF+I GG ++ + + + ++ G A +G LQ GD ++ VN +
Sbjct: 103 LIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLED 162
Query: 497 YTHHDMVSVFQSISPGETVQLEVCR 521
H D V+ ++ + V L+V +
Sbjct: 163 VMHEDAVAALKNTY--DVVYLKVAK 185
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 597 EYLTIPIVKGAMGFGFTIADSSHGQK--------VKKILD---RQRCKNLAEGDILIEIN 645
+ + I ++KG G GF+IA Q V KI++ + L GD ++ +N
Sbjct: 97 KVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVN 156
Query: 646 NLNVRNMCHGEVVQVLKDC 664
++ + ++ H + V LK+
Sbjct: 157 SVGLEDVMHEDAVAALKNT 175
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 45/212 (21%)
Query: 921 YDVTITRRENEGFGFVIISSLNKAGST------------IGRIIEDSPADRSGELHLGDH 968
Y+ R N G GF I AG T I +II A + G L + D
Sbjct: 13 YEEITLERGNSGLGFSI------AGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDS 66
Query: 969 ILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDXXXXXXXXXXXHREYEEGGE 1028
IL VN VD+ + H V +K++G V L + R+
Sbjct: 67 ILFVNEVDVREVTHSAAVEALKEAGSIVRLYV------------------MRRKPPA--- 105
Query: 1029 HDEQYHAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIV 1084
E+ I+L +G +G GFSI GG Q++ +++V +I E G A DG L++GD+I+
Sbjct: 106 --EKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKIL 163
Query: 1085 EINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+N + +++ H +A+ ++N V L + +
Sbjct: 164 AVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 195
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 92/201 (45%), Gaps = 25/201 (12%)
Query: 814 SVEYSDVMVITLLRQENGFGFRIVGGTE-----EGSQVSIGHIVPGGAADLDGRLCTGDE 868
S+EY + ITL R +G GF I GGT+ + + I I+PGGAA DGRL D
Sbjct: 10 SMEYEE---ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDS 66
Query: 869 IXXXXXXXXXXXXHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSMMLGYPYDVTITRR 928
I H VE + +A R+ + +RRK PPAE ++ + +
Sbjct: 67 ILFVNEVDVREVTHSAAVEALKEAGSIVRLYV-MRRK--PPAEKV-------MEIKLIKG 116
Query: 929 ENEGFGFVIISSLNKA------GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHH 982
+G GF I + + +IIE A + G L +GD ILAVN V + + H
Sbjct: 117 P-KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMH 175
Query: 983 GEIVNLIKDSGYCVTLTIGAP 1003
+ V +K++ V L + P
Sbjct: 176 EDAVAALKNTYDVVYLKVAKP 196
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEIN 1087
+Y I L RG G GFSI GG + ++ ++F+ +I G AA DG L+V D I+ +N
Sbjct: 12 EYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN 71
Query: 1088 GINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
++ + +TH+ A+E ++ S VRL + R
Sbjct: 72 EVDVREVTHSAAVEALKEAGSIVRLYVMR 100
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 447 GLGFTIVGGDDS----KEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
GLGF+I GG D+ + + I ++P G AA +G L+ D +++VN+ V TH
Sbjct: 24 GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAA 83
Query: 503 VSVFQSISPGETVQLEVCRGYP 524
V + G V+L V R P
Sbjct: 84 VEALK--EAGSIVRLYVMRRKP 103
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 441 LVKSLRGLGFTIVGGDDSK----EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
L+K +GLGF+I GG ++ + + + ++ G A +G LQ GD ++ VN +
Sbjct: 113 LIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLED 172
Query: 497 YTHHDMVSVFQSISPGETVQLEVCR 521
H D V+ ++ + V L+V +
Sbjct: 173 VMHEDAVAALKNTY--DVVYLKVAK 195
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 597 EYLTIPIVKGAMGFGFTIADSSHGQK--------VKKILD---RQRCKNLAEGDILIEIN 645
+ + I ++KG G GF+IA Q V KI++ + L GD ++ +N
Sbjct: 107 KVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVN 166
Query: 646 NLNVRNMCHGEVVQVLKDC 664
++ + ++ H + V LK+
Sbjct: 167 SVGLEDVMHEDAVAALKNT 185
>pdb|2YSE|A Chain A, Solution Structure Of The Second Ww Domain From The Human
Membrane-Associated Guanylate Kinase, Ww And Pdz Domain-
Containing Protein 1. Magi-1
Length = 60
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 41/49 (83%), Gaps = 1/49 (2%)
Query: 338 SDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQAKHRDQ-GAGPS 385
S+ ELP GWE+I+DP YG YY+DH+N++TQYENPVL+AK + Q +GPS
Sbjct: 10 SELELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLEAKRKKQLESGPS 58
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 53/85 (62%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
Q IE+S+G G G SI GG++ A+ + ++ E G AA DG L GD+I+E+NG++
Sbjct: 17 QEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDL 76
Query: 1092 KNMTHAEAIEIIRNGDSTVRLLIKR 1116
+N +H EAI +R VRL++ R
Sbjct: 77 RNSSHEEAITALRQTPQKVRLVVYR 101
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 434 GERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKC 493
G+ + + K GLG +IVGG D+ + I V G AA +G L GD ++ VN
Sbjct: 16 GQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVD 75
Query: 494 VLGYTHHDMVSVFQ 507
+ +H + ++ +
Sbjct: 76 LRNSSHEEAITALR 89
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 932 GFGFVII----SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVN 987
G G I+ + LN I + E+ A R G L GD IL VN VD+ + H E +
Sbjct: 29 GLGLSIVGGKDTPLNAI--VIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAIT 86
Query: 988 LIKDSGYCVTLTI 1000
++ + V L +
Sbjct: 87 ALRQTPQKVRLVV 99
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 821 MVITLLRQENGFGFRIVGGTEEG-SQVSIGHIVPGGAADLDGRLCTGDEI 869
M+I + + +G G IVGG + + + I + GAA DGRL GD+I
Sbjct: 19 MIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQI 68
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 599 LTIPIVKGAMGFGFTIADSSHG-------QKVKKILDRQRCKNLAEGDILIEINNLNVRN 651
+ I I KG G G +I +V + R L GD ++E+N +++RN
Sbjct: 19 MIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRN 78
Query: 652 MCHGEVVQVLKDCQRNLEANIIVQRSRLQHK 682
H E + L+ Q + ++V R ++
Sbjct: 79 SSHEEAITALR--QTPQKVRLVVYRDEAHYR 107
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%)
Query: 823 ITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXXXXXXH 882
+ L R E+GFGFRI+GG E G + IG ++ G+AD DGRL GDE+ H
Sbjct: 13 VHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTH 72
Query: 883 HHVVELMGKASVYGRVTLGIRRKVM 907
+V++LM A+ G+V L +RRKV+
Sbjct: 73 RYVIDLMHHAARNGQVNLTVRRKVL 97
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
G GF I+GGD+ + L I +V+ G A +G L GD LVYV+ V G TH ++ +
Sbjct: 21 GFGFRILGGDEPGQPIL-IGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLM 79
Query: 507 QSISPGETVQLEVCR 521
+ V L V R
Sbjct: 80 HHAARNGQVNLTVRR 94
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+ L R GFGF I GG E + + + G A DG L GDE+V ++GI T
Sbjct: 13 VHLRRMESGFGFRILGGDE-PGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKT 71
Query: 1096 HAEAIEII----RNGDSTVRLLIKR 1116
H I+++ RNG V L ++R
Sbjct: 72 HRYVIDLMHHAARNGQ--VNLTVRR 94
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 927 RRENEGFGFVIISSLNKAGS--TIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGE 984
RR GFGF I+ ++ G IG +I ADR G LH GD ++ V+ + + H
Sbjct: 16 RRMESGFGFRILGG-DEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRY 74
Query: 985 IVNLI 989
+++L+
Sbjct: 75 VIDLM 79
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEIN 1087
+Y I L RG G GFSI GG + ++ ++F+ +I G AA DG L+V D I+ +N
Sbjct: 11 EYEEITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVN 70
Query: 1088 GINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
++ +++TH++A+E ++ S VRL +KR
Sbjct: 71 EVDVRDVTHSKAVEALKEAGSIVRLYVKR 99
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 823 ITLLRQENGFGFRIVGGTE-----EGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXX 877
ITL R +G GF I GGT+ + S + I I+ GGAA DGRL D I
Sbjct: 15 ITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDV 74
Query: 878 XXXXHHHVVELMGKASVYGRVTLGIRRKV 906
H VE + +A R+ + R+ V
Sbjct: 75 RDVTHSKAVEALKEAGSIVRLYVKRRKPV 103
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 447 GLGFTIVGGDDS----KEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
GLGF+I GG D+ + + I ++ G AA +G L+ D ++ VN+ V TH
Sbjct: 23 GLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHSKA 82
Query: 503 VSVFQSISPGETVQLEVCRGYPL 525
V + G V+L V R P+
Sbjct: 83 VEALK--EAGSIVRLYVKRRKPV 103
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 597 EYLTIPIVKGAMGFGFTIA---DSSH-----GQKVKKILDRQRCKN---LAEGDILIEIN 645
EY I + +G G GF+IA D+ H + KI+ L D ++ +N
Sbjct: 11 EYEEITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVN 70
Query: 646 NLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSP 686
++VR++ H + V+ LK EA IV RL K+ P
Sbjct: 71 EVDVRDVTHSKAVEALK------EAGSIV---RLYVKRRKP 102
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMA----LFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
I L+RG G GF+I GG + Q ++ ++V +I ENG AALDG L+ GD+I+ +NG +
Sbjct: 11 INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDL 70
Query: 1092 KNMTHAEAIEIIRNGDSTVRLLIK 1115
KN+ H +A+++ RN V L ++
Sbjct: 71 KNLLHQDAVDLFRNAGYAVSLRVQ 94
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 440 SLVKSLRGLGFTIVGGDD----SKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVL 495
+L + GLGF IVGG D S + + + + NG AAL+G LQ GD ++ VN + +
Sbjct: 12 NLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLK 71
Query: 496 GYTHHDMVSVFQSISPGETVQLEV 519
H D V +F+ + G V L V
Sbjct: 72 NLLHQDAVDLFR--NAGYAVSLRV 93
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 932 GFGFVIISSL------NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEI 985
G GF I+ N +G + RI E+ A G L GD IL+VN D+ +L H +
Sbjct: 19 GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 78
Query: 986 VNLIKDSGYCVTLTI 1000
V+L +++GY V+L +
Sbjct: 79 VDLFRNAGYAVSLRV 93
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 823 ITLLRQENGFGFRIVGGTEE-----GSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXX 877
I L R +G GF IVGGT++ S + + I GAA LDGRL GD+I
Sbjct: 11 INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDL 70
Query: 878 XXXXHHHVVELMGKA 892
H V+L A
Sbjct: 71 KNLLHQDAVDLFRNA 85
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human Synaptojanin
2 Binding Protein
Length = 120
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 4/84 (4%)
Query: 1036 IELSRGTRGFGFSIRGGREFQ----NMALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
I L+RG G GF+I GG + Q + ++V +I ENG AALDG L+ GD+I+ +NG +
Sbjct: 21 INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDL 80
Query: 1092 KNMTHAEAIEIIRNGDSTVRLLIK 1115
KN+ H +A+++ RN V L ++
Sbjct: 81 KNLLHQDAVDLFRNAGYAVSLRVQ 104
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 440 SLVKSLRGLGFTIVGGDD----SKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVL 495
+L + GLGF IVGG D S + + + + NG AAL+G LQ GD ++ VN + +
Sbjct: 22 NLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLK 81
Query: 496 GYTHHDMVSVFQSISPGETVQLEV 519
H D V +F+ + G V L V
Sbjct: 82 NLLHQDAVDLFR--NAGYAVSLRV 103
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 14/98 (14%)
Query: 922 DVTITRRENEGFGFVIISSL------NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHV 975
++ +TR + G GF I+ N +G + RI E+ A G L GD IL+VN
Sbjct: 20 EINLTRGPS-GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQ 78
Query: 976 DIMSLHHGEIVNLIKDSGYCVTLTI-------GAPISG 1006
D+ +L H + V+L +++GY V+L + PISG
Sbjct: 79 DLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPISG 116
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 823 ITLLRQENGFGFRIVGGTEE-----GSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXX 877
I L R +G GF IVGGT++ S + + I GAA LDGRL GD+I
Sbjct: 21 INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDL 80
Query: 878 XXXXHHHVVELMGKA 892
H V+L A
Sbjct: 81 KNLLHQDAVDLFRNA 95
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMA----LFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
I L+RG G GF+I GG + Q ++ ++V +I ENG AALDG L+ GD+I+ +NG +
Sbjct: 13 INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDL 72
Query: 1092 KNMTHAEAIEIIRNGDSTVRLLIK 1115
KN+ H +A+++ RN V L ++
Sbjct: 73 KNLLHQDAVDLFRNAGYAVSLRVQ 96
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 440 SLVKSLRGLGFTIVGGDD----SKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVL 495
+L + GLGF IVGG D S + + + + NG AAL+G LQ GD ++ VN + +
Sbjct: 14 NLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLK 73
Query: 496 GYTHHDMVSVFQSISPGETVQLEV 519
H D V +F+ + G V L V
Sbjct: 74 NLLHQDAVDLFR--NAGYAVSLRV 95
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 932 GFGFVIISSL------NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEI 985
G GF I+ N +G + RI E+ A G L GD IL+VN D+ +L H +
Sbjct: 21 GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 80
Query: 986 VNLIKDSGYCVTLTI 1000
V+L +++GY V+L +
Sbjct: 81 VDLFRNAGYAVSLRV 95
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 823 ITLLRQENGFGFRIVGGTEE-----GSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXX 877
I L R +G GF IVGGT++ S + + I GAA LDGRL GD+I
Sbjct: 13 INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDL 72
Query: 878 XXXXHHHVVELMGKA 892
H V+L A
Sbjct: 73 KNLLHQDAVDLFRNA 87
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEIN 1087
+Y I L RG G GFSI GG + ++ ++F+ +I G AA DG L+V D I+ +N
Sbjct: 1 EYEEITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVN 60
Query: 1088 GINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+ +++TH++A+E ++ S VRL +KR
Sbjct: 61 EADVRDVTHSKAVEALKEAGSIVRLYVKR 89
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 823 ITLLRQENGFGFRIVGGTE-----EGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXX 877
ITL R +G GF I GGT+ + S + I I+ GGAA DGRL D I
Sbjct: 5 ITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADV 64
Query: 878 XXXXHHHVVELMGKASVYGRVTLGIRR 904
H VE + +A R+ + R+
Sbjct: 65 RDVTHSKAVEALKEAGSIVRLYVKRRK 91
Score = 38.9 bits (89), Expect = 0.017, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 440 SLVKSLRGLGFTIVGGDDS----KEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVL 495
+L + GLGF+I GG D+ + + I ++ G AA +G L+ D ++ VN+ V
Sbjct: 6 TLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVR 65
Query: 496 GYTHHDMVSVFQSISPGETVQLEVCR 521
TH V + G V+L V R
Sbjct: 66 DVTHSKAVEALK--EAGSIVRLYVKR 89
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 49/81 (60%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
IE+S+G G G SI GG + A+ + ++ E G A DG L GD+I+E+NGI+ + T
Sbjct: 8 IEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKAT 67
Query: 1096 HAEAIEIIRNGDSTVRLLIKR 1116
H EAI ++R VRL + R
Sbjct: 68 HDEAINVLRQTPQRVRLTLYR 88
Score = 36.6 bits (83), Expect = 0.076, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 443 KSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
K GLG +IVGG D+ + I V G A +G L GD ++ VN + TH +
Sbjct: 12 KGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEA 71
Query: 503 VSVFQ 507
++V +
Sbjct: 72 INVLR 76
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 948 IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
I + E+ A + G L GD IL VN +D+ H E +N+++ + V LT+
Sbjct: 34 IHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTL 86
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 16/98 (16%)
Query: 600 TIPIVKGAMGFGFTIADSSHGQKVKKIL-----DRQRCKN--LAEGDILIEINNLNVRNM 652
TI I KG G G +I S I+ + CK+ L GD ++E+N +++R
Sbjct: 7 TIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKA 66
Query: 653 CHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRS 690
H E + VL+ QR RL + P++S
Sbjct: 67 THDEAINVLRQTP---------QRVRLTLYRDEAPYKS 95
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 823 ITLLRQENGFGFRIVGGTEEGSQVSIGH-IVPGGAADLDGRLCTGDEIXXXXXXXXXXXX 881
I + + G G IVGG++ I H + GAA DGRL GD+I
Sbjct: 8 IEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKAT 67
Query: 882 HHHVVELMGKASVYGRVTL 900
H + ++ + R+TL
Sbjct: 68 HDEAINVLRQTPQRVRLTL 86
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 31/203 (15%)
Query: 923 VTITRRENEGFGFVIISSLNKAGS-TIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
V + ++E G + ++K G + + + A RS +L +GD+I AVN +++
Sbjct: 11 VELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFR 70
Query: 982 HGEIVNLIKDSGYCVTLTIGAPISGDDXXXXXXXXXXXHREYE------EGGEHDEQYHA 1035
H EI++L+K+ G V L + EYE +G +
Sbjct: 71 HDEIISLLKNVGERVVLEV---------------------EYELPPVSIQGSSVMFRTVE 109
Query: 1036 IELSRGTRGFGFSIRGGR---EFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTK 1092
+ L + FGF IRGG ++ + + + GPA +G +K GD ++ ++GI
Sbjct: 110 VTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLL 169
Query: 1093 NMTHAEAIEIIRNGDSTVRLLIK 1115
THAEA+ I++ LLI+
Sbjct: 170 GTTHAEAMSILKQCGQEATLLIE 192
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 9/185 (4%)
Query: 822 VITLLRQE-NGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXXXXX 880
V+ L+++E G + GG ++ + + ++ GG A +L GD I
Sbjct: 10 VVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKF 69
Query: 881 XHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSMMLGYPYDVTITRRENEGFGFVIISS 940
H ++ L+ +V RV L + ++ P + S ++ +VT+ +E FGFVI
Sbjct: 70 RHDEIISLL--KNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTL-HKEGNTFGFVIRGG 126
Query: 941 L----NKAGSTIGRIIE-DSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYC 995
NK+ + + PADR G + GD +L+V+ + ++ H E ++++K G
Sbjct: 127 AHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQE 186
Query: 996 VTLTI 1000
TL I
Sbjct: 187 ATLLI 191
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 448 LGFTIVGG---DDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVS 504
GF I GG D +K + I V P GPA EG ++ GD L+ V+ +LG TH + +S
Sbjct: 119 FGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMS 178
Query: 505 VFQSISPGETVQLE 518
+ + T+ +E
Sbjct: 179 ILKQCGQEATLLIE 192
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 68.2 bits (165), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 1033 YHAIELSRGTRGFGFSIRGGREFQ-NMALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
+ ++EL RG GFG ++ GGR+ + L V + ++GPA G L+VGD ++ ING +T
Sbjct: 12 HFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGEST 71
Query: 1092 KNMTHAEAIEIIRNGDSTVRLLIKR 1116
+ +THA+A+E IR G + L+I+R
Sbjct: 72 QGLTHAQAVERIRAGGPQLHLVIRR 96
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 928 RENEGFGFVIISSLNKAGST---IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGE 984
R GFG + + AG T + +++D PA R G L +GD +L +N L H +
Sbjct: 19 RGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQ 78
Query: 985 IVNLIKDSGYCVTLTIGAPISG 1006
V I+ G + L I P+SG
Sbjct: 79 AVERIRAGGPQLHLVIRRPLSG 100
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 441 LVKSLRGLGFTIVGGDD-SKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTH 499
LV+ G G T+ GG D + + L ++ ++ +GPA G L+ GD+++++N + G TH
Sbjct: 17 LVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTH 76
Query: 500 HDMVSVFQSISP 511
V ++ P
Sbjct: 77 AQAVERIRAGGP 88
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 598 YLTIPIVKGAMGFGFTIADSSHGQ-----KVKKILD---RQRCKNLAEGDILIEINNLNV 649
+ ++ +V+G GFG T+ V+ +L QRC L GD+++ IN +
Sbjct: 12 HFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGEST 71
Query: 650 RNMCHGEVVQVLK 662
+ + H + V+ ++
Sbjct: 72 QGLTHAQAVERIR 84
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95: Structural
Basis For Enhanced Affinity And Enzymatic Stability
Length = 99
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEIN 1087
+Y I L RG G GFSI GG + ++ ++F+ +I G AA DG L+V D I+ +N
Sbjct: 1 EYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN 60
Query: 1088 GINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
++ + +TH+ A+E ++ S VRL + R
Sbjct: 61 EVDVREVTHSAAVEALKEAGSIVRLYVMR 89
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 823 ITLLRQENGFGFRIVGGTE-----EGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXX 877
ITL R +G GF I GGT+ + + I I+PGGAA DGRL D I
Sbjct: 5 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 64
Query: 878 XXXXHHHVVELMGKASVYGRVTLGIRRKVMPP 909
H VE + +A R+ + +RRK PP
Sbjct: 65 REVTHSAAVEALKEAGSIVRLYV-MRRK--PP 93
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 447 GLGFTIVGGDDS----KEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
GLGF+I GG D+ + + I ++P G AA +G L+ D +++VN+ V TH
Sbjct: 13 GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAA 72
Query: 503 VSVFQSISPGETVQLEVCRGYP 524
V + G V+L V R P
Sbjct: 73 VEALK--EAGSIVRLYVMRRKP 92
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEIN 1087
+Y I L RG G GFSI GG + ++ ++F+ +I G AA DG L+V D I+ +N
Sbjct: 1 EYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN 60
Query: 1088 GINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
++ + +TH+ A+E ++ S VRL + R
Sbjct: 61 EVDVREVTHSAAVEALKEAGSIVRLYVMR 89
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 823 ITLLRQENGFGFRIVGGTE-----EGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXX 877
ITL R +G GF I GGT+ + + I I+PGGAA DGRL D I
Sbjct: 5 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 64
Query: 878 XXXXHHHVVELMGKASVYGRVTLGIRRKVMPP 909
H VE + +A R+ + +RRK PP
Sbjct: 65 REVTHSAAVEALKEAGSIVRLYV-MRRK--PP 93
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 447 GLGFTIVGGDDS----KEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
GLGF+I GG D+ + + I ++P G AA +G L+ D +++VN+ V TH
Sbjct: 13 GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAA 72
Query: 503 VSVFQSISPGETVQLEVCRGYP 524
V + G V+L V R P
Sbjct: 73 VEALK--EAGSIVRLYVMRRKP 92
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEIN 1087
+Y I L RG G GFSI GG + ++ ++F+ +I G AA DG L+V D I+ +N
Sbjct: 2 EYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN 61
Query: 1088 GINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
++ + +TH+ A+E ++ S VRL + R
Sbjct: 62 EVDVREVTHSAAVEALKEAGSIVRLYVMR 90
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 447 GLGFTIVGGDDS----KEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
GLGF+I GG D+ + + I ++P G AA +G L+ D +++VN+ V TH
Sbjct: 14 GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAA 73
Query: 503 VSVFQSISPGETVQLEVCR 521
V + G V+L V R
Sbjct: 74 VEALK--EAGSIVRLYVMR 90
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 823 ITLLRQENGFGFRIVGGTE-----EGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXX 877
ITL R +G GF I GGT+ + + I I+PGGAA DGRL D I
Sbjct: 6 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 65
Query: 878 XXXXHHHVVELMGKA 892
H VE + +A
Sbjct: 66 REVTHSAAVEALKEA 80
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
+ H IEL + G G S+ G ++ M++FV+ I GPAA DG +++GDE++EIN
Sbjct: 25 ELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQIL 84
Query: 1092 KNMTHAEAIEIIRNGDSTVRLLIKR 1116
+H A II+ S V+L+ R
Sbjct: 85 YGRSHQNASAIIKTAPSKVKLVFIR 109
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 431 ELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVN 490
+L GE L K GLG ++ G D + + + P GPAA +G ++ GD L+ +N
Sbjct: 21 DLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEIN 80
Query: 491 DKCVLGYTHHDMVSVFQS 508
++ + G +H + ++ ++
Sbjct: 81 NQILYGRSHQNASAIIKT 98
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 64.3 bits (155), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
Query: 1027 GEHDEQYHAIELSRGTRGFGFSIRGGREFQNMA----LFVLQIAENGPAALDGHLKVGDE 1082
G + ++ I L RG G GFSI GG + ++ +F+ +I G AA DG L+V D
Sbjct: 4 GSPEFEFEEITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDC 63
Query: 1083 IVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
I+ +N ++ ++H++A+E ++ S VRL ++R
Sbjct: 64 ILRVNEVDVSEVSHSKAVEALKEAGSIVRLYVRR 97
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 823 ITLLRQENGFGFRIVGGTE-----EGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXX 877
ITL R +G GF I GGT+ + + I I+PGGAA DGRL D I
Sbjct: 13 ITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDV 72
Query: 878 XXXXHHHVVELMGKASVYGRVTLGIRRKVM 907
H VE + +A R+ + RR ++
Sbjct: 73 SEVSHSKAVEALKEAGSIVRLYVRRRRPIL 102
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 440 SLVKSLRGLGFTIVGGDDS----KEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVL 495
+L + GLGF+I GG D+ + + I ++P G AA +G L+ D ++ VN+ V
Sbjct: 14 TLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVS 73
Query: 496 GYTHHDMVSVFQSISPGETVQLEVCRGYPL 525
+H V + G V+L V R P+
Sbjct: 74 EVSHSKAVEALK--EAGSIVRLYVRRRRPI 101
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 1032 QYHAIELSRGTRGFGFSIRGG--REFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGI 1089
Q +I L RG G GFSI GG ++ ++V + G A+ DG LK GD+I+ +NG
Sbjct: 25 QCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQ 84
Query: 1090 NTKNMTHAEAIEIIRNGDSTVRLLI 1114
+ + +TH EA+ I++ TV L++
Sbjct: 85 SLEGVTHEEAVAILKRTKGTVTLMV 109
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 447 GLGFTIVGGDDSKEEFLQI--KSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVS 504
GLGF+IVGG S L I K+V G A+ +G L+ GD ++ VN + + G TH + V+
Sbjct: 37 GLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVA 96
Query: 505 VFQ 507
+ +
Sbjct: 97 ILK 99
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 823 ITLLRQENGFGFRIVG--GTEEGSQ-VSIGHIVPGGAADLDGRLCTGDEIXXXXXXXXXX 879
ITL R +G GF IVG G+ G + + + GAA DGRL GD+I
Sbjct: 29 ITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEG 88
Query: 880 XXHHHVVELMGKASVYGRVTL 900
H V ++ + G VTL
Sbjct: 89 VTHEEAVAILKRTK--GTVTL 107
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 928 RENEGFGFVIISSLNKAGST----IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHG 983
R +G GF I+ + + A G L GD I+AVN + + H
Sbjct: 33 RGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHE 92
Query: 984 EIVNLIKDSGYCVTLTI 1000
E V ++K + VTL +
Sbjct: 93 EAVAILKRTKGTVTLMV 109
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 1034 HAIELSRGTRGFGFSIRGGR-----EFQNMALFVLQIAENGPAALDGHLKVGDEIVEING 1088
H L+R RG GFSI GG+ + +FV +IAE G A G L+VGD ++ ING
Sbjct: 9 HVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSING 68
Query: 1089 INTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
++ H A+ ++ T+ LL++R
Sbjct: 69 VDVTEARHDHAVSLLTAASPTIALLLER 96
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 928 RENEGFGFVIISS-------LNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSL 980
R G GF I AG + RI E A R+G L +GD +L++N VD+
Sbjct: 15 RSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEA 74
Query: 981 HHGEIVNLIKDSGYCVTLTI 1000
H V+L+ + + L +
Sbjct: 75 RHDHAVSLLTAASPTIALLL 94
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 439 SSLVKSLRGLGFTIVGGDDSK-----EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKC 493
+ L +S RGLGF+I GG S + + + + G A G LQ GD ++ +N
Sbjct: 11 ACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVD 70
Query: 494 VLGYTHHDMVSVFQSISPGETVQLE 518
V H VS+ + SP + LE
Sbjct: 71 VTEARHDHAVSLLTAASPTIALLLE 95
Score = 37.4 bits (85), Expect = 0.050, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQ--------VSIGHIVPGGAADLDGRLCTGDEIXXXX 873
V L R E G GF I GG +GS + + I GGAA G L GD +
Sbjct: 10 VACLARSERGLGFSIAGG--KGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSIN 67
Query: 874 XXXXXXXXHHHVVELMGKAS 893
H H V L+ AS
Sbjct: 68 GVDVTEARHDHAVSLLTAAS 87
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Query: 1031 EQYHAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEI 1086
E+ I+L +G +G GFSI GG Q++ +++V +I E G A DG L++GD+++ +
Sbjct: 2 EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 1087 NGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
N ++ + +TH EA+ ++N V L + +
Sbjct: 62 NSVSLEEVTHEEAVTALKNTSDFVYLKVAK 91
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 948 IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPIS 1005
+ +IIE A + G+L +GD +LAVN V + + H E V +K++ V L + P S
Sbjct: 37 VTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTS 94
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 441 LVKSLRGLGFTIVGGDDSK----EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
L+K +GLGF+I GG ++ + + + ++ G A +G LQ GD L+ VN +
Sbjct: 9 LIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEE 68
Query: 497 YTHHDMVSVFQSISPGETVQLEVCR 521
TH + V+ ++ S + V L+V +
Sbjct: 69 VTHEEAVTALKNTS--DFVYLKVAK 91
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 820 VMVITLLRQENGFGFRIVGGTEEGSQ-------VSIGHIVPGGAADLDGRLCTGDEIXXX 872
+M I L++ G GF I GG G+Q + + I+ GGAA DG+L GD++
Sbjct: 4 IMEIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 873 XXXXXXXXXHHHVVELMGKAS--VYGRVT 899
H V + S VY +V
Sbjct: 62 NSVSLEEVTHEEAVTALKNTSDFVYLKVA 90
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
Query: 599 LTIPIVKGAMGFGFTIADSSHGQK--------VKKILD---RQRCKNLAEGDILIEINNL 647
+ I ++KG G GF+IA Q V KI++ + L GD L+ +N++
Sbjct: 5 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSV 64
Query: 648 NVRNMCHGEVVQVLKDC 664
++ + H E V LK+
Sbjct: 65 SLEEVTHEEAVTALKNT 81
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway Of
A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway Of
A Pdz Domain
Length = 106
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEIN 1087
+H + RG++G GFSI GG Q+ +++V +I E G A DG L++GD+++ +N
Sbjct: 2 HHHHHLVPRGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN 61
Query: 1088 GINTKNMTHAEAIEIIRNGDSTVRLLIKRGGS 1119
+ + +TH EA+ ++N V L + + GS
Sbjct: 62 NVALEEVTHEEAVTALKNTSDFVYLKVAKPGS 93
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 928 RENEGFGFVIISSLNKA------GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
R ++G GF I + + +IIE A + G+L +GD +LAVN+V + +
Sbjct: 10 RGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVT 69
Query: 982 HGEIVNLIKDSGYCVTLTIGAPISGD 1007
H E V +K++ V L + P SG+
Sbjct: 70 HEEAVTALKNTSDFVYLKVAKPGSGE 95
Score = 39.3 bits (90), Expect = 0.013, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 438 HSSLVKSLRGLGFTIVGGDDSK----EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKC 493
H + + +GLGF+I GG ++ + + + ++ G A +G LQ GD L+ VN+
Sbjct: 5 HHLVPRGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVA 64
Query: 494 VLGYTHHDMVSVFQSIS 510
+ TH + V+ ++ S
Sbjct: 65 LEEVTHEEAVTALKNTS 81
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 827 RQENGFGFRIVGGTEEGSQ-------VSIGHIVPGGAADLDGRLCTGDEIXXXXXXXXXX 879
R G GF I GG G+Q + + I+ GGAA DG+L GD++
Sbjct: 10 RGSKGLGFSIAGGV--GNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEE 67
Query: 880 XXHHHVVELMGKAS--VYGRV 898
H V + S VY +V
Sbjct: 68 VTHEEAVTALKNTSDFVYLKV 88
>pdb|2ZAJ|A Chain A, Solution Structure Of The Short-Isoform Of The Second Ww
Domain From The Human Membrane-Associated Guanylate
Kinase, Ww And Pdz Domain-Containing Protein 1 (Magi-1)
Length = 49
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 30/34 (88%)
Query: 338 SDDELPYGWERIDDPAYGTYYIDHVNKQTQYENP 371
S+ ELP GWE+I+DP YG YY+DH+N++TQYENP
Sbjct: 10 SELELPAGWEKIEDPVYGIYYVDHINRKTQYENP 43
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 56/94 (59%), Gaps = 4/94 (4%)
Query: 1031 EQYHAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEI 1086
E+ I+L +G +G GFSI GG Q++ +++V +I E G A DG L++GD+++ +
Sbjct: 2 EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 1087 NGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSV 1120
N + + +TH EA+ ++N V L + + S+
Sbjct: 62 NSVGLEEVTHEEAVTALKNTSDFVYLKVAKPTSM 95
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 948 IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPIS 1005
+ +IIE A + G+L +GD +LAVN V + + H E V +K++ V L + P S
Sbjct: 37 VTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKVAKPTS 94
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 441 LVKSLRGLGFTIVGGDDSK----EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
L+K +GLGF+I GG ++ + + + ++ G A +G LQ GD L+ VN +
Sbjct: 9 LIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEE 68
Query: 497 YTHHDMVSVFQSIS 510
TH + V+ ++ S
Sbjct: 69 VTHEEAVTALKNTS 82
Score = 36.6 bits (83), Expect = 0.094, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 820 VMVITLLRQENGFGFRIVGGTEEGSQ-------VSIGHIVPGGAADLDGRLCTGDEIXXX 872
+M I L++ G GF I GG G+Q + + I+ GGAA DG+L GD++
Sbjct: 4 IMEIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 873 XXXXXXXXXHHHVVELMGKAS--VYGRV 898
H V + S VY +V
Sbjct: 62 NSVGLEEVTHEEAVTALKNTSDFVYLKV 89
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 599 LTIPIVKGAMGFGFTIADSSHGQK--------VKKILD---RQRCKNLAEGDILIEINNL 647
+ I ++KG G GF+IA Q V KI++ + L GD L+ +N++
Sbjct: 5 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSV 64
Query: 648 NVRNMCHGEVVQVLKD 663
+ + H E V LK+
Sbjct: 65 GLEEVTHEEAVTALKN 80
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g With
C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g With
C-Terminal Glur-A Peptide
Length = 105
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 1031 EQYHAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEI 1086
E+ I+L +G +G GFSI GG Q++ +++V I E G A DG L++GD+++ +
Sbjct: 2 EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAV 61
Query: 1087 NGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
N + + +TH EA+ ++N V L + +
Sbjct: 62 NSVGLEEVTHEEAVTALKNTSDFVYLKVAK 91
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 441 LVKSLRGLGFTIVGGDDSK----EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
L+K +GLGF+I GG ++ + + + S+V G A +G LQ GD L+ VN +
Sbjct: 9 LIKGPKGLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEE 68
Query: 497 YTHHDMVSVFQSISPGETVQLEVCR 521
TH + V+ ++ S + V L+V +
Sbjct: 69 VTHEEAVTALKNTS--DFVYLKVAK 91
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 951 IIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPIS 1005
I+E A + G+L +GD +LAVN V + + H E V +K++ V L + P S
Sbjct: 40 IVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKVAKPTS 94
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 820 VMVITLLRQENGFGFRIVGGTEEGSQ-------VSIGHIVPGGAADLDGRLCTGDEIXXX 872
+M I L++ G GF I GG G+Q + + IV GGAA DG+L GD++
Sbjct: 4 IMEIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAV 61
Query: 873 XXXXXXXXXHHHVVELMGKAS--VYGRVT 899
H V + S VY +V
Sbjct: 62 NSVGLEEVTHEEAVTALKNTSDFVYLKVA 90
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 56/94 (59%), Gaps = 4/94 (4%)
Query: 1031 EQYHAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEI 1086
E+ I+L +G +G GFSI GG Q++ +++V +I E G A DG L++GD+++ +
Sbjct: 10 EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 69
Query: 1087 NGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSV 1120
N + + +TH EA+ ++N V L + + S+
Sbjct: 70 NNVCLEEVTHEEAVTALKNTSDFVYLKVAKPTSM 103
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 441 LVKSLRGLGFTIVGGDDSK----EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
L+K +GLGF+I GG ++ + + + ++ G A +G LQ GD L+ VN+ C+
Sbjct: 17 LIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEE 76
Query: 497 YTHHDMVSVFQSIS 510
TH + V+ ++ S
Sbjct: 77 VTHEEAVTALKNTS 90
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 948 IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPIS 1005
+ +IIE A + G+L +GD +LAVN+V + + H E V +K++ V L + P S
Sbjct: 45 VTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAKPTS 102
Score = 36.6 bits (83), Expect = 0.088, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 820 VMVITLLRQENGFGFRIVGGTEEGSQ-------VSIGHIVPGGAADLDGRLCTGDEIXXX 872
+M I L++ G GF I GG G+Q + + I+ GGAA DG+L GD++
Sbjct: 12 IMEIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 69
Query: 873 XXXXXXXXXHHHVVELMGKAS--VYGRV 898
H V + S VY +V
Sbjct: 70 NNVCLEEVTHEEAVTALKNTSDFVYLKV 97
Score = 33.1 bits (74), Expect = 0.92, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 599 LTIPIVKGAMGFGFTIADSSHGQK--------VKKILD---RQRCKNLAEGDILIEINNL 647
+ I ++KG G GF+IA Q V KI++ + L GD L+ +NN+
Sbjct: 13 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNV 72
Query: 648 NVRNMCHGEVVQVLKD 663
+ + H E V LK+
Sbjct: 73 CLEEVTHEEAVTALKN 88
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 56/94 (59%), Gaps = 4/94 (4%)
Query: 1031 EQYHAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEI 1086
E+ I+L +G +G GFSI GG Q++ +++V +I E G A DG L++GD+++ +
Sbjct: 2 EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 1087 NGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSV 1120
N + + +TH EA+ ++N V L + + S+
Sbjct: 62 NSVCLEEVTHEEAVTALKNTSDFVYLKVAKPTSM 95
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 441 LVKSLRGLGFTIVGGDDSK----EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
L+K +GLGF+I GG ++ + + + ++ G A +G LQ GD L+ VN C+
Sbjct: 9 LIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEE 68
Query: 497 YTHHDMVSVFQSIS 510
TH + V+ ++ S
Sbjct: 69 VTHEEAVTALKNTS 82
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 948 IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPIS 1005
+ +IIE A + G+L +GD +LAVN V + + H E V +K++ V L + P S
Sbjct: 37 VTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALKNTSDFVYLKVAKPTS 94
Score = 36.6 bits (83), Expect = 0.089, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 820 VMVITLLRQENGFGFRIVGGTEEGSQ-------VSIGHIVPGGAADLDGRLCTGDEIXXX 872
+M I L++ G GF I GG G+Q + + I+ GGAA DG+L GD++
Sbjct: 4 IMEIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 873 XXXXXXXXXHHHVVELMGKAS--VYGRV 898
H V + S VY +V
Sbjct: 62 NSVCLEEVTHEEAVTALKNTSDFVYLKV 89
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 599 LTIPIVKGAMGFGFTIADSSHGQK--------VKKILD---RQRCKNLAEGDILIEINNL 647
+ I ++KG G GF+IA Q V KI++ + L GD L+ +N++
Sbjct: 5 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSV 64
Query: 648 NVRNMCHGEVVQVLKD 663
+ + H E V LK+
Sbjct: 65 CLEEVTHEEAVTALKN 80
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
I+L +G +G GFSI GG Q++ +++V +I + G A DG L+VGD ++ +N +
Sbjct: 28 IKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSL 87
Query: 1092 KNMTHAEAIEIIRNGDSTVRLLIKR 1116
+ +TH EA+ I++N V L + +
Sbjct: 88 EEVTHEEAVAILKNTSEVVYLKVGK 112
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 437 IHSSLVKSLRGLGFTIVGGDDSK----EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDK 492
+ L K +GLGF+I GG ++ + + + ++ G A +G LQ GD L+ VN+
Sbjct: 26 VEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNY 85
Query: 493 CVLGYTHHDMVSVFQSISPGETVQLEVCR 521
+ TH + V++ ++ S E V L+V +
Sbjct: 86 SLEEVTHEEAVAILKNTS--EVVYLKVGK 112
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 948 IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPIS 1005
+ +II+ A + G L +GD +L VN+ + + H E V ++K++ V L +G P +
Sbjct: 58 VTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTT 115
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 601 IPIVKGAMGFGFTIADSSHGQK--------VKKILD---RQRCKNLAEGDILIEINNLNV 649
I + KG G GF+IA Q V KI+D Q+ L GD L+ +NN ++
Sbjct: 28 IKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSL 87
Query: 650 RNMCHGEVVQVLKDC 664
+ H E V +LK+
Sbjct: 88 EEVTHEEAVAILKNT 102
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 820 VMVITLLRQENGFGFRIVGGTEEGSQ-------VSIGHIVPGGAADLDGRLCTGDEIXXX 872
V+ I L + G GF I GG G+Q + + I+ GGAA DGRL GD +
Sbjct: 25 VVEIKLFKGPKGLGFSIAGGV--GNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMV 82
Query: 873 XXXXXXXXXHHHVVELMGKAS--VYGRV 898
H V ++ S VY +V
Sbjct: 83 NNYSLEEVTHEEAVAILKNTSEVVYLKV 110
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 1027 GEHD--EQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIV 1084
GE D + I + RG+ G GF+I GG + +F+ I GPA L G L+ GD+I+
Sbjct: 4 GEEDIPREPRRIVIHRGSTGLGFNIVGGEXGE--GIFISFILAGGPADLSGELRKGDQIL 61
Query: 1085 EINGINTKNMTHAEAIEIIRNGDSTVRLL 1113
+NG++ +N +H +A ++N TV ++
Sbjct: 62 SVNGVDLRNASHEQAAIALKNAGQTVTII 90
Score = 50.4 bits (119), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 925 ITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGE 984
+ R + G GF I+ G I I+ PAD SGEL GD IL+VN VD+ + H +
Sbjct: 16 VIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 75
Query: 985 IVNLIKDSGYCVTL 998
+K++G VT+
Sbjct: 76 AAIALKNAGQTVTI 89
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 823 ITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEI 869
I + R G GF IVGG E G + I I+ GG ADL G L GD+I
Sbjct: 15 IVIHRGSTGLGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQI 60
Score = 37.0 bits (84), Expect = 0.061, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVN 490
GLGF IVGG+ + F I ++ GPA L G L+ GD ++ VN
Sbjct: 23 GLGFNIVGGEXGEGIF--ISFILAGGPADLSGELRKGDQILSVN 64
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 1031 EQYHAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEI 1086
E+ I+L +G +G GFSI GG Q++ +++V +I E G A DG L++GD+++ +
Sbjct: 8 EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 67
Query: 1087 NGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGS 1119
N + + +TH EA+ ++N V L + + S
Sbjct: 68 NNVCLEEVTHEEAVTALKNTSDFVYLKVAKPTS 100
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 441 LVKSLRGLGFTIVGGDDSK----EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
L+K +GLGF+I GG ++ + + + ++ G A +G LQ GD L+ VN+ C+
Sbjct: 15 LIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEE 74
Query: 497 YTHHDMVSVFQSIS 510
TH + V+ ++ S
Sbjct: 75 VTHEEAVTALKNTS 88
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 948 IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPIS 1005
+ +IIE A + G+L +GD +LAVN+V + + H E V +K++ V L + P S
Sbjct: 43 VTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAKPTS 100
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 820 VMVITLLRQENGFGFRIVGGTEEGSQ-------VSIGHIVPGGAADLDGRLCTGDEIXXX 872
+M I L++ G GF I GG G+Q + + I+ GGAA DG+L GD++
Sbjct: 10 IMEIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 67
Query: 873 XXXXXXXXXHHHVVELMGKAS--VYGRV 898
H V + S VY +V
Sbjct: 68 NNVCLEEVTHEEAVTALKNTSDFVYLKV 95
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 599 LTIPIVKGAMGFGFTIADSSHGQK--------VKKILD---RQRCKNLAEGDILIEINNL 647
+ I ++KG G GF+IA Q V KI++ + L GD L+ +NN+
Sbjct: 11 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNV 70
Query: 648 NVRNMCHGEVVQVLKD 663
+ + H E V LK+
Sbjct: 71 CLEEVTHEEAVTALKN 86
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv Peptide
Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein Complexed
With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz Domain
Of Post Synaptic Psd-95 Protein
Length = 119
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
I + RG+ G GF+I GG + + +F+ I GPA L G L+ GD+I+ +NG++ +N +
Sbjct: 18 IVIHRGSTGLGFNIVGGEDGE--GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 75
Query: 1096 HAEAIEIIRNGDSTVRLLIK 1115
H +A ++N TV ++ +
Sbjct: 76 HEQAAIALKNAGQTVTIIAQ 95
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%)
Query: 925 ITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGE 984
+ R + G GF I+ + G I I+ PAD SGEL GD IL+VN VD+ + H +
Sbjct: 19 VIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 78
Query: 985 IVNLIKDSGYCVTL 998
+K++G VT+
Sbjct: 79 AAIALKNAGQTVTI 92
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
GLGF IVGG+D + F+ ++ GPA L G L+ GD ++ VN + +H
Sbjct: 26 GLGFNIVGGEDGEGIFISF--ILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL 83
Query: 507 QSISPGETVQL 517
+ + G+TV +
Sbjct: 84 K--NAGQTVTI 92
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 823 ITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEI 869
I + R G GF IVGG E+G + I I+ GG ADL G L GD+I
Sbjct: 18 IVIHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQI 63
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+EL + G GF+I GG+E QN +++ ++ G A G LK GD+++ +NG++ +
Sbjct: 9 VELPKTDEGLGFNIMGGKE-QNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQ 67
Query: 1096 HAEAIEIIRNGDSTVRLLIKRG 1117
H +A+E+++ +V+L+++ G
Sbjct: 68 HEKAVELLKAAQGSVKLVVRSG 89
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXXXXXX 881
V+ L + + G GF I+GG E+ S + I ++PGG AD G L GD++
Sbjct: 8 VVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQ 67
Query: 882 HHHVVELMGKASVYGRVTLGIR 903
H VEL+ A G V L +R
Sbjct: 68 HEKAVELLKAA--QGSVKLVVR 87
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 928 RENEGFGFVIISSLNKAGST-IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIV 986
+ +EG GF I+ + I R+I ADR G L GD +L+VN V + H + V
Sbjct: 13 KTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAV 72
Query: 987 NLIKDSGYCVTLTI 1000
L+K + V L +
Sbjct: 73 ELLKAAQGSVKLVV 86
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
L K+ GLGF I+GG + + + I V+P G A G L+ GD L+ VN V G H
Sbjct: 11 LPKTDEGLGFNIMGGKE-QNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHE 69
Query: 501 DMVSVFQS 508
V + ++
Sbjct: 70 KAVELLKA 77
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
I + RG+ G GF+I GG + +F+ I GPA L G L+ GD+I+ +NG++ +N +
Sbjct: 10 IVIHRGSTGLGFNIVGGEXGE--GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 67
Query: 1096 HAEAIEIIRNGDSTVRLL 1113
H +A ++N TV ++
Sbjct: 68 HEQAAIALKNAGQTVTII 85
Score = 50.4 bits (119), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 925 ITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGE 984
+ R + G GF I+ G I I+ PAD SGEL GD IL+VN VD+ + H +
Sbjct: 11 VIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 70
Query: 985 IVNLIKDSGYCVTL 998
+K++G VT+
Sbjct: 71 AAIALKNAGQTVTI 84
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 823 ITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEI 869
I + R G GF IVGG E G + I I+ GG ADL G L GD+I
Sbjct: 10 IVIHRGSTGLGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQI 55
Score = 37.0 bits (84), Expect = 0.061, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVN 490
GLGF IVGG+ + F I ++ GPA L G L+ GD ++ VN
Sbjct: 18 GLGFNIVGGEXGEGIF--ISFILAGGPADLSGELRKGDQILSVN 59
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
I + RG+ G GF+I GG + + +F+ I GPA L G L+ GD+I+ +NG++ +N +
Sbjct: 18 IVIHRGSTGLGFNIIGGEDGE--GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 75
Query: 1096 HAEAIEIIRNGDSTVRLLIK 1115
H +A ++N TV ++ +
Sbjct: 76 HEQAAIALKNAGQTVTIIAQ 95
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 925 ITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGE 984
+ R + G GF II + G I I+ PAD SGEL GD IL+VN VD+ + H +
Sbjct: 19 VIHRGSTGLGFNIIGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 78
Query: 985 IVNLIKDSGYCVTL 998
+K++G VT+
Sbjct: 79 AAIALKNAGQTVTI 92
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
GLGF I+GG+D + F+ ++ GPA L G L+ GD ++ VN + +H
Sbjct: 26 GLGFNIIGGEDGEGIFISF--ILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL 83
Query: 507 QSISPGETVQL 517
+ + G+TV +
Sbjct: 84 K--NAGQTVTI 92
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 823 ITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEI 869
I + R G GF I+GG E+G + I I+ GG ADL G L GD+I
Sbjct: 18 IVIHRGSTGLGFNIIGG-EDGEGIFISFILAGGPADLSGELRKGDQI 63
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 57.4 bits (137), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 1031 EQYHAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEI 1086
E+ I+L +G +G GFSI GG Q+ +++V +I E G A DG L++GD+++ +
Sbjct: 7 EKIMEIKLIKGPKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 66
Query: 1087 NGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGS 1119
N + + +TH EA+ ++N V L + + S
Sbjct: 67 NNVALEEVTHEEAVTALKNTSDFVYLKVAKPTS 99
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 948 IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPIS 1005
+ +IIE A + G+L +GD +LAVN+V + + H E V +K++ V L + P S
Sbjct: 42 VTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAKPTS 99
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 441 LVKSLRGLGFTIVGGDDSK----EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
L+K +GLGF+I GG ++ + + + ++ G A +G LQ GD L+ VN+ +
Sbjct: 14 LIKGPKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEE 73
Query: 497 YTHHDMVSVFQSIS 510
TH + V+ ++ S
Sbjct: 74 VTHEEAVTALKNTS 87
Score = 36.2 bits (82), Expect = 0.096, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 820 VMVITLLRQENGFGFRIVGGTEEGSQ-------VSIGHIVPGGAADLDGRLCTGDEIXXX 872
+M I L++ G GF I GG G+Q + + I+ GGAA DG+L GD++
Sbjct: 9 IMEIKLIKGPKGLGFSIAGGV--GNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 66
Query: 873 XXXXXXXXXHHHVVELMGKAS--VYGRV 898
H V + S VY +V
Sbjct: 67 NNVALEEVTHEEAVTALKNTSDFVYLKV 94
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 599 LTIPIVKGAMGFGFTIADSSHGQK--------VKKILD---RQRCKNLAEGDILIEINNL 647
+ I ++KG G GF+IA Q V KI++ + L GD L+ +NN+
Sbjct: 10 MEIKLIKGPKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNV 69
Query: 648 NVRNMCHGEVVQVLKD 663
+ + H E V LK+
Sbjct: 70 ALEEVTHEEAVTALKN 85
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 57.0 bits (136), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
I L +G+ G GF+I GG + + +FV I GPA L G L+ GD I+ +NG+N +N T
Sbjct: 16 IILHKGSTGLGFNIVGGEDGE--GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNAT 73
Query: 1096 HAEAIEIIRNGDSTVRLL 1113
H +A ++ +V ++
Sbjct: 74 HEQAAAALKRAGQSVTIV 91
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 925 ITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGE 984
I + + G GF I+ + G + I+ PAD SGEL GD IL+VN V++ + H +
Sbjct: 17 ILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQ 76
Query: 985 IVNLIKDSGYCVTL 998
+K +G VT+
Sbjct: 77 AAAALKRAGQSVTI 90
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 425 FTLNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGD 484
FT P ++I L K GLGF IVGG+D + F+ ++ GPA L G L+ GD
Sbjct: 9 FTREPRKII-------LHKGSTGLGFNIVGGEDGEGIFVSF--ILAGGPADLSGELRRGD 59
Query: 485 VLVYVNDKCVLGYTHHDMVSVFQSISPGETV 515
++ VN + TH + + T+
Sbjct: 60 RILSVNGVNLRNATHEQAAAALKRAGQSVTI 90
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 823 ITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXXXXXXH 882
I L + G GF IVGG E+G + + I+ GG ADL G L GD I H
Sbjct: 16 IILHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATH 74
Query: 883 HHVVELMGKA 892
+ +A
Sbjct: 75 EQAAAALKRA 84
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of Postsynaptic
Density-95
Length = 95
Score = 57.0 bits (136), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Query: 1031 EQYHAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEI 1086
E+ I+L +G +G GFSI GG Q++ +++V +I E G A DG L++GD+I+ +
Sbjct: 2 EKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 61
Query: 1087 NGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
N + +++ H +A+ ++N V L + +
Sbjct: 62 NSVGLEDVMHEDAVAALKNTYDVVYLKVAK 91
Score = 38.9 bits (89), Expect = 0.018, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 948 IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAP 1003
+ +IIE A + G L +GD ILAVN V + + H + V +K++ V L + P
Sbjct: 37 VTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKP 92
Score = 38.5 bits (88), Expect = 0.022, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 820 VMVITLLRQENGFGFRIVGGTEEGSQ-------VSIGHIVPGGAADLDGRLCTGDEI 869
VM I L++ G GF I GG G+Q + + I+ GGAA DGRL GD+I
Sbjct: 4 VMEIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKI 58
Score = 38.1 bits (87), Expect = 0.028, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 441 LVKSLRGLGFTIVGGDDSK----EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
L+K +GLGF+I GG ++ + + + ++ G A +G LQ GD ++ VN +
Sbjct: 9 LIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLED 68
Query: 497 YTHHDMVSVFQS 508
H D V+ ++
Sbjct: 69 VMHEDAVAALKN 80
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 57.0 bits (136), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
I+L +G +G GFSI GG Q++ +++V +I E G A DG L++GD+++ +N +
Sbjct: 3 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCL 62
Query: 1092 KNMTHAEAIEIIRNGDSTVRLLIKR 1116
+ +TH EA+ ++N V L + +
Sbjct: 63 EEVTHEEAVTALKNTSDFVYLKVAK 87
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 441 LVKSLRGLGFTIVGGDDSK----EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
L+K +GLGF+I GG ++ + + + ++ G A +G LQ GD L+ VN+ C+
Sbjct: 5 LIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEE 64
Query: 497 YTHHDMVSVFQSIS 510
TH + V+ ++ S
Sbjct: 65 VTHEEAVTALKNTS 78
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 948 IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAP 1003
+ +IIE A + G+L +GD +LAVN+V + + H E V +K++ V L + P
Sbjct: 33 VTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAKP 88
Score = 35.0 bits (79), Expect = 0.26, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 821 MVITLLRQENGFGFRIVGGTEEGSQ-------VSIGHIVPGGAADLDGRLCTGDEIXXXX 873
M I L++ G GF I GG G+Q + + I+ GGAA DG+L GD++
Sbjct: 1 MEIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN 58
Query: 874 XXXXXXXXHHHVVELMGKAS--VYGRV 898
H V + S VY +V
Sbjct: 59 NVCLEEVTHEEAVTALKNTSDFVYLKV 85
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 599 LTIPIVKGAMGFGFTIADSSHGQK--------VKKILD---RQRCKNLAEGDILIEINNL 647
+ I ++KG G GF+IA Q V KI++ + L GD L+ +NN+
Sbjct: 1 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNV 60
Query: 648 NVRNMCHGEVVQVLKD 663
+ + H E V LK+
Sbjct: 61 CLEEVTHEEAVTALKN 76
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human Dlg3
Length = 94
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
+ L +G +G GFSI GG Q++ ++++ +I E G A DG L++GD ++ +N N
Sbjct: 7 VNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 66
Query: 1092 KNMTHAEAIEIIRNGDSTVRLLIKRGGS 1119
+++ H EA+ ++N V L + + GS
Sbjct: 67 QDVRHEEAVASLKNTSDMVYLKVAKPGS 94
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 948 IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAP 1003
I +IIE A + G L +GD +LAVN+ ++ + H E V +K++ V L + P
Sbjct: 37 ITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP 92
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 440 SLVKSLRGLGFTIVGGDDSK----EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVL 495
+L+K +GLGF+I GG ++ + + I ++ G A +G LQ GD L+ VN+ +
Sbjct: 8 NLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQ 67
Query: 496 GYTHHDMVSVFQSISPGETVQLEVCR 521
H + V+ ++ S + V L+V +
Sbjct: 68 DVRHEEAVASLKNTS--DMVYLKVAK 91
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 820 VMVITLLRQENGFGFRIVGGTEEGSQ-------VSIGHIVPGGAADLDGRLCTGDEI 869
+M + LL+ G GF I GG G+Q + I I+ GGAA DGRL GD +
Sbjct: 4 IMEVNLLKGPKGLGFSIAGGI--GNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRL 58
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 11/77 (14%)
Query: 599 LTIPIVKGAMGFGFTIADSSHGQKV--------KKILD---RQRCKNLAEGDILIEINNL 647
+ + ++KG G GF+IA Q + KI++ Q+ L GD L+ +NN
Sbjct: 5 MEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNT 64
Query: 648 NVRNMCHGEVVQVLKDC 664
N++++ H E V LK+
Sbjct: 65 NLQDVRHEEAVASLKNT 81
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 57.0 bits (136), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
I+L +G +G GFSI GG Q++ +++V +I E G A DG L++GD+++ +N +
Sbjct: 2 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCL 61
Query: 1092 KNMTHAEAIEIIRNGDSTVRL 1112
+ +TH EA+ ++N V L
Sbjct: 62 EEVTHEEAVTALKNTSDFVYL 82
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 441 LVKSLRGLGFTIVGGDDSK----EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
L+K +GLGF+I GG ++ + + + ++ G A +G LQ GD L+ VN C+
Sbjct: 4 LIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEE 63
Query: 497 YTHHDMVSVFQSIS 510
TH + V+ ++ S
Sbjct: 64 VTHEEAVTALKNTS 77
Score = 36.6 bits (83), Expect = 0.091, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 948 IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTL 998
+ +IIE A + G+L +GD +LAVN V + + H E V +K++ V L
Sbjct: 32 VTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALKNTSDFVYL 82
Score = 33.9 bits (76), Expect = 0.49, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 823 ITLLRQENGFGFRIVGGTEEGSQ-------VSIGHIVPGGAADLDGRLCTGDEIXXXXXX 875
I L++ G GF I GG G+Q + + I+ GGAA DG+L GD++
Sbjct: 2 IKLIKGPKGLGFSIAGGV--GNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSV 59
Query: 876 XXXXXXHHHVVELMGKAS 893
H V + S
Sbjct: 60 CLEEVTHEEAVTALKNTS 77
Score = 30.4 bits (67), Expect = 5.8, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
Query: 601 IPIVKGAMGFGFTIADSSHGQK--------VKKILD---RQRCKNLAEGDILIEINNLNV 649
I ++KG G GF+IA Q V KI++ + L GD L+ +N++ +
Sbjct: 2 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCL 61
Query: 650 RNMCHGEVVQVLKD 663
+ H E V LK+
Sbjct: 62 EEVTHEEAVTALKN 75
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 56.6 bits (135), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
I L +G+ G GF+I GG + + +FV I GPA L G L+ GD I+ +NG+N +N T
Sbjct: 19 IILHKGSTGLGFNIVGGEDGE--GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNAT 76
Query: 1096 HAEAIEIIRNGDSTVRLL 1113
H +A ++ +V ++
Sbjct: 77 HEQAAAALKRAGQSVTIV 94
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 925 ITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGE 984
I + + G GF I+ + G + I+ PAD SGEL GD IL+VN V++ + H +
Sbjct: 20 ILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQ 79
Query: 985 IVNLIKDSGYCVTL 998
+K +G VT+
Sbjct: 80 AAAALKRAGQSVTI 93
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
L K GLGF IVGG+D + F+ ++ GPA L G L+ GD ++ VN + TH
Sbjct: 21 LHKGSTGLGFNIVGGEDGEGIFVSF--ILAGGPADLSGELRRGDRILSVNGVNLRNATHE 78
Query: 501 DMVSVFQSISPGETV 515
+ + T+
Sbjct: 79 QAAAALKRAGQSVTI 93
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 823 ITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXXXXXXH 882
I L + G GF IVGG E+G + + I+ GG ADL G L GD I H
Sbjct: 19 IILHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATH 77
Query: 883 HHVVELMGKA 892
+ +A
Sbjct: 78 EQAAAALKRA 87
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
GLGF++ GG D + + + + V PNG A+ EG +Q G+ ++ +N K + G THHD +++
Sbjct: 28 GLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAIL 87
Query: 507 Q 507
+
Sbjct: 88 R 88
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 1044 GFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEII 1103
G GFS+ GG + +N + V ++ NG A+ +G ++ G+E++ ING + K TH +A+ I+
Sbjct: 28 GLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAIL 87
Query: 1104 R 1104
R
Sbjct: 88 R 88
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 819 DVMVITLLRQENG--FGFRIVGGTE-EGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXX 875
D + +T+L +E G GF + GG + E +++ + P G A +G + G+E+
Sbjct: 14 DGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGK 73
Query: 876 XXXXXXHHHVVELMGKASVYGRVTLGIRRKVMPPA 910
HH + ++ +A R + + RK+ P A
Sbjct: 74 SLKGTTHHDALAILRQAR-EPRQAVIVTRKLTPEA 107
>pdb|2YSD|A Chain A, Solution Structure Of The First Ww Domain From The Human
Membrane-Associated Guanylate Kinase, Ww And Pdz Domain-
Containing Protein 1. Magi-1
Length = 57
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 26/33 (78%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRLCKFQK 332
WE AYTE GEVYFIDHN+ T+SWLDPR Q+
Sbjct: 19 WEMAYTENGEVYFIDHNTKTTSWLDPRCLNKQQ 51
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Query: 1036 IELSRGTRGFGFSIRG---GREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTK 1092
+EL++ +G G +I G ++ + +FV I ++ DG +++GD+I+ ++G N +
Sbjct: 8 VELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQ 67
Query: 1093 NMTHAEAIEIIRNGDSTVRL-LIKRGGSVV 1121
T+ +A+E++R+ TV L L++RG + V
Sbjct: 68 GFTNQQAVEVLRHTGQTVLLTLMRRGETSV 97
Score = 39.7 bits (91), Expect = 0.011, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 433 IGERIHSSLVKSLRGLGFTIVG--GDDSKE-EFLQIKSVVPNGPAALEGHLQTGDVLVYV 489
+ E L K+++GLG TI G GD E + +KS+ + +G +Q GD ++ V
Sbjct: 2 MSETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAV 61
Query: 490 NDKCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
+ + G+T+ V V + G+TV L + R
Sbjct: 62 DGTNLQGFTNQQAVEVLRHT--GQTVLLTLMR 91
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 921 YDVTITRRENEGFGFVII-----SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHV 975
+DV +T+ +G G I L +G + I + S + G + +GD I+AV+
Sbjct: 6 FDVELTKNV-QGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGT 64
Query: 976 DIMSLHHGEIVNLIKDSGYCVTLTI 1000
++ + + V +++ +G V LT+
Sbjct: 65 NLQGFTNQQAVEVLRHTGQTVLLTL 89
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs Large
Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs Large
Homologue 2, Dlg2
Length = 102
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+ L +G+ G GF+I GG + + +FV I GPA L G L+ GD+I+ +NGI+ + +
Sbjct: 7 VVLHKGSTGLGFNIVGGEDGE--GIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGAS 64
Query: 1096 HAEAIEIIRNGDSTVRLL 1113
H +A ++ TV ++
Sbjct: 65 HEQAAAALKGAGQTVTII 82
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 925 ITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGE 984
+ + + G GF I+ + G + I+ PAD SGEL GD IL+VN +D+ H +
Sbjct: 8 VLHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQ 67
Query: 985 IVNLIKDSGYCVTL 998
+K +G VT+
Sbjct: 68 AAAALKGAGQTVTI 81
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
L K GLGF IVGG+D + F+ ++ GPA L G LQ GD ++ VN + G +H
Sbjct: 9 LHKGSTGLGFNIVGGEDGEGIFVSF--ILAGGPADLSGELQRGDQILSVNGIDLRGASHE 66
Query: 501 DMVSVFQSISPGETVQL 517
+ + G+TV +
Sbjct: 67 QAAAALK--GAGQTVTI 81
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 823 ITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEI 869
+ L + G GF IVGG E+G + + I+ GG ADL G L GD+I
Sbjct: 7 VVLHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELQRGDQI 52
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 6/82 (7%)
Query: 1040 RGTRGFGFSIRGGR-----EFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNM 1094
R T G G SI GG+ + + +F+ +++E GPAA G ++VGD+++E+NG+ +
Sbjct: 11 RQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGA 69
Query: 1095 THAEAIEIIRNGDSTVRLLIKR 1116
H EA+E +R + V++ + R
Sbjct: 70 EHHEAVEALRGAGTAVQMRVWR 91
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 435 ERIHSSLVKSLRGLGFTIVGGDDSK-----EEFLQIKSVVPNGPAALEGHLQTGDVLVYV 489
E + ++++ GLG +I GG S +E + I V GPAA G ++ GD L+ V
Sbjct: 3 EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 61
Query: 490 NDKCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
N + G HH+ V + G VQ+ V R
Sbjct: 62 NGVALQGAEHHEAVEALR--GAGTAVQMRVWR 91
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 945 GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
G I R+ E+ PA R+G + +GD +L VN V + H E V ++ +G V + +
Sbjct: 35 GIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 89
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 55/92 (59%), Gaps = 6/92 (6%)
Query: 1030 DEQYHAIELSRGTRGFGFSIRGGR-----EFQNMALFVLQIAENGPAALDGHLKVGDEIV 1084
+E+ + + R T G G SI GG+ + + +F+ +++E GPAA G ++VGD+++
Sbjct: 13 EEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLL 71
Query: 1085 EINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
E+NG+ + H EA+E +R + V++ + R
Sbjct: 72 EVNGVALQGAEHHEAVEALRGAGTAVQMRVWR 103
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 429 PDELIGERIHSSLVKSLRGLGFTIVGGDDSK-----EEFLQIKSVVPNGPAALEGHLQTG 483
P + E + ++++ GLG +I GG S +E + I V GPAA G ++ G
Sbjct: 9 PARIEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVG 67
Query: 484 DVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
D L+ VN + G HH+ V + G VQ+ V R
Sbjct: 68 DKLLEVNGVALQGAEHHEAVEALR--GAGTAVQMRVWR 103
Score = 35.4 bits (80), Expect = 0.20, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 945 GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI---G 1001
G I R+ E+ PA R+G + +GD +L VN V + H E V ++ +G V + +
Sbjct: 47 GIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRES 105
Query: 1002 APISG 1006
P SG
Sbjct: 106 GPSSG 110
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 120
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 1036 IELSRG-TRGFGFSIRGG--REFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTK 1092
+E+ +G T G SI GG ++ +F+ + G AA L+VGD IV I G +T+
Sbjct: 28 VEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTE 87
Query: 1093 NMTHAEAIEIIRNGDSTVRLLIKRGGSV 1120
MTH +A+ +++N ++ + + GG V
Sbjct: 88 GMTHTQAVNLLKNASGSIEMQVVAGGDV 115
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+EL G GF I GG+ + V I G A DG L+ GD I++I G N + MT
Sbjct: 19 VELINDGSGLGFGIVGGK---TSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMT 75
Query: 1096 HAEAIEIIRNGDSTVRLLIKR 1116
+ +++RN ++VR+L+ R
Sbjct: 76 SEQVAQVLRNCGNSVRMLVAR 96
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
L+ GLGF IVGG K + ++++VP G A +G LQTGD ++ + V G T
Sbjct: 21 LINDGSGLGFGIVGG---KTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSE 77
Query: 501 DMVSVFQSISPGETVQLEVCR 521
+ V ++ G +V++ V R
Sbjct: 78 QVAQVLRNC--GNSVRMLVAR 96
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 813 KSVEYSDVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEI 869
++V + V + L+ +G GF IVGG G V + IVPGG AD DGRL TGD I
Sbjct: 9 ETVCWGHVEEVELINDGSGLGFGIVGGKTSG--VVVRTIVPGGLADRDGRLQTGDHI 63
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 929 ENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNL 988
+ G GF I+ +G + I+ ADR G L GDHIL + ++ + ++ +
Sbjct: 24 DGSGLGFGIVGG-KTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQV 82
Query: 989 IKDSGYCVTLTIGAPISGD 1007
+++ G V + + +GD
Sbjct: 83 LRNCGNSVRMLVARDPAGD 101
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 607 AMGFGFTIADSSHGQKVKKILD---RQRCKNLAEGDILIEINNLNVRNMCHGEVVQVLKD 663
+GFG + + G V+ I+ R L GD +++I NV+ M +V QVL++
Sbjct: 27 GLGFGI-VGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRN 85
Query: 664 CQRNL 668
C ++
Sbjct: 86 CGNSV 90
>pdb|2PA1|A Chain A, Structure Of The Pdz Domain Of Human Pdlim2 Bound To A
C-Terminal Extension From Human Beta-Tropomyosin
Length = 87
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 1041 GTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAI 1100
G +GF I GGR+F + V ++AE G A D L+ GD IV ING + + M HAEA
Sbjct: 10 GPAPWGFRITGGRDFHT-PIMVTKVAERGKAK-DADLRPGDIIVAINGESAEGMLHAEAQ 67
Query: 1101 EIIRNGDSTVRLLIKR 1116
IR S +RL + R
Sbjct: 68 SKIRQSPSPLRLQLDR 83
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase
Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 1036 IELSRGTRGFGFSIRGG--REFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKN 1093
+EL++ G S+ GG ++ ++V + G A DG + GD ++ +NG++ +
Sbjct: 9 VELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 68
Query: 1094 MTHAEAIEIIRNGDSTVRLLIKRGGS 1119
TH +A+E +RN V LL+++G S
Sbjct: 69 ATHKQAVETLRNTGQVVHLLLEKGQS 94
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 434 GERIHSSLVKSLRGLGFTIVGGDDS--KEEFLQIKSVVPNGPAALEGHLQTGDVLVYVND 491
G+ L K+ LG ++ GG ++ + + +K+V+P G A +G + GD ++ VN
Sbjct: 4 GDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNG 63
Query: 492 KCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
+ G TH V ++ G+ V L + +G
Sbjct: 64 VSLEGATHKQAVETLRNT--GQVVHLLLEKG 92
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 921 YDVTITRRENEGFGFVIISSLNKA----GSTIGRIIEDSPADRSGELHLGDHILAVNHVD 976
++V + + +N G + +N + G + +I A+ G +H GD +LAVN V
Sbjct: 7 FEVELAKNDNS-LGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVS 65
Query: 977 IMSLHHGEIVNLIKDSGYCVTLTI 1000
+ H + V ++++G V L +
Sbjct: 66 LEGATHKQAVETLRNTGQVVHLLL 89
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 819 DVMVITLLRQENGFGFRIVGGTEEGSQ---VSIGHIVPGGAADLDGRLCTGDEIXXXXXX 875
D+ + L + +N G + GG + + + ++P GAA+ DGR+ GD +
Sbjct: 5 DIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGV 64
Query: 876 XXXXXXHHHVVELM 889
H VE +
Sbjct: 65 SLEGATHKQAVETL 78
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEIN 1087
+Y I L RG G GFSI GG + ++ +F+ +I G AA+DG L V D ++ +N
Sbjct: 4 KYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVN 63
Query: 1088 GINTKNMTHAEAIEIIR 1104
++ + H+ A+E ++
Sbjct: 64 EVDVSEVVHSRAVEALK 80
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 823 ITLLRQENGFGFRIVGGTE-----EGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXX 877
I L R +G GF I GG + + + I I+PGGAA +DGRL D +
Sbjct: 8 IVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDV 67
Query: 878 XXXXHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSM 915
H VE + +A G V + R+ PP E TS+
Sbjct: 68 SEVVHSRAVEALKEA---GPVVRLVVRRRQPPPEETSV 102
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 447 GLGFTIVGGDDSK----EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
GLGF+I GG D+ + + I ++P G AA++G L D ++ VN+ V H
Sbjct: 16 GLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRA 75
Query: 503 VSVFQSISP 511
V + P
Sbjct: 76 VEALKEAGP 84
>pdb|3PDV|A Chain A, Structure Of The Pdlim2 Pdz Domain In Complex With The
C-Terminal 6- Peptide Extension Of Ns1
Length = 89
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 1041 GTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAI 1100
G +GF I GGR+F + V ++AE G A D L+ GD IV ING + + M HAEA
Sbjct: 9 GPAPWGFRITGGRDFHT-PIMVTKVAERGKAK-DADLRPGDIIVAINGESAEGMLHAEAQ 66
Query: 1101 EIIRNGDSTVRLLIKR 1116
IR S +RL + R
Sbjct: 67 SKIRQSPSPLRLQLDR 82
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 1027 GEHDEQYHAIELSRGTRGFGFSIRGGREFQ--NMALFVLQIAENGPAALDGHLKVGDEIV 1084
G H E + ++ G G GFS+ G R + +FV +I E A DG LK D+I+
Sbjct: 18 GRHVEVFELLKPPSG--GLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQIL 75
Query: 1085 EINGIN-TKNMTHAEAIEIIRNGDSTVRLLIKRG 1117
ING + +TH +AI I++ TV+L+I RG
Sbjct: 76 AINGQALDQTITHQQAISILQKAKDTVQLVIARG 109
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase
Hptp1e Complexed With A Peptide
Length = 96
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 1036 IELSRGTRGFGFSIRGG--REFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKN 1093
+EL++ G S+ GG ++ ++V + G A DG + GD ++ +NG++ +
Sbjct: 9 VELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 68
Query: 1094 MTHAEAIEIIRNGDSTVRLLIKRGGS 1119
TH +A+E +RN V LL+++G S
Sbjct: 69 ATHKQAVETLRNTGQVVHLLLEKGQS 94
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 434 GERIHSSLVKSLRGLGFTIVGGDDS--KEEFLQIKSVVPNGPAALEGHLQTGDVLVYVND 491
G+ L K+ LG ++ GG ++ + + +K+V+P G A +G + GD ++ VN
Sbjct: 4 GDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNG 63
Query: 492 KCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
+ G TH V + + G+ V L + +G
Sbjct: 64 VSLEGATHKQAVETLR--NTGQVVHLLLEKG 92
Score = 36.6 bits (83), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 918 GYPYDVTITRRENEGFGFVIISSLNKA----GSTIGRIIEDSPADRSGELHLGDHILAVN 973
G ++V + + +N G + +N + G + +I A+ G +H GD +LAVN
Sbjct: 4 GDIFEVELAKNDNS-LGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVN 62
Query: 974 HVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
V + H + V ++++G V L +
Sbjct: 63 GVSLEGATHKQAVETLRNTGQVVHLLL 89
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 819 DVMVITLLRQENGFGFRIVGGTEEGSQ---VSIGHIVPGGAADLDGRLCTGDEIXXXXXX 875
D+ + L + +N G + GG + + + ++P GAA+ DGR+ GD +
Sbjct: 5 DIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGV 64
Query: 876 XXXXXXHHHVVELM 889
H VE +
Sbjct: 65 SLEGATHKQAVETL 78
>pdb|1WIF|A Chain A, The Solution Structure Of Rsgi Ruh-020, A Pdz Domain Of
Hypothetical Protein From Mouse
Length = 126
Score = 53.5 bits (127), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 437 IHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
I + L GLG ++ +LQI ++ G AA +G LQ GDVL+ V VLG
Sbjct: 29 IQTKLTVGNLGLGLVVI----QNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLG 84
Query: 497 YTHHDMVSVFQSISPGETVQLEVCRGY 523
YT + + + Q+I+ G +Q++ RG+
Sbjct: 85 YTLREFLKLLQNITIGTVLQIKAYRGF 111
>pdb|2KXQ|A Chain A, Solution Structure Of Smurf2 Ww2 And Ww3 Bound To Smad7 Py
Motif Containing Peptide
Length = 90
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRLCKFQKKLEDCSDDELPYGWERIDDPAYGTYYI 359
+E+ T++G+VYF+ + S+W DPR+ + + LP GWE + Y++
Sbjct: 14 YEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRNTATGRVYFV 73
Query: 360 DHVNKQTQYENPVLQA 375
DH N+ TQ+ +P L A
Sbjct: 74 DHNNRTTQFTDPRLSA 89
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand From
The Apc Protein
Length = 102
Score = 53.1 bits (126), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 1036 IELSRGTRGFGFSIRGG--REFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKN 1093
+EL++ G S+ GG ++ ++V I G A DG + GD ++ +NG++ +
Sbjct: 16 VELAKTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG 75
Query: 1094 MTHAEAIEIIRNGDSTVRLLIKRG 1117
TH +A+E +RN V LL+++G
Sbjct: 76 ATHKQAVETLRNTGQVVHLLLEKG 99
Score = 38.9 bits (89), Expect = 0.019, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 434 GERIHSSLVKSLRGLGFTIVGGDDS--KEEFLQIKSVVPNGPAALEGHLQTGDVLVYVND 491
G+ L K+ LG ++ GG ++ + + +K+++P G A +G + GD ++ VN
Sbjct: 11 GDTFEVELAKTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNG 70
Query: 492 KCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
+ G TH V ++ G+ V L + +G
Sbjct: 71 VSLEGATHKQAVETLRNT--GQVVHLLLEKG 99
Score = 37.4 bits (85), Expect = 0.054, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 939 SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTL 998
+S+ G + II A+ G +H GD +LAVN V + H + V ++++G V L
Sbjct: 35 TSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHL 94
Query: 999 TI 1000
+
Sbjct: 95 LL 96
Score = 33.5 bits (75), Expect = 0.71, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 819 DVMVITLLRQENGFGFRIVGGTEEGSQ---VSIGHIVPGGAADLDGRLCTGDEIXXXXXX 875
D + L + + G + GG + + + I+P GAA+ DGR+ GD +
Sbjct: 12 DTFEVELAKTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGV 71
Query: 876 XXXXXXHHHVVELM 889
H VE +
Sbjct: 72 SLEGATHKQAVETL 85
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 53.1 bits (126), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 1036 IELSRGTRGFGFSIRG---GRE--FQNMALFVLQIAENGPAALDGHLKVGDEIVEINGIN 1090
+EL + G G SI G G + + + +FV + E G A DG ++V D+IVE++GI+
Sbjct: 8 VELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGIS 67
Query: 1091 TKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+T A ++RN VR +I R
Sbjct: 68 LVGVTQNFAATVLRNTKGNVRFVIGR 93
Score = 30.4 bits (67), Expect = 6.5, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 817 YSDVMVITLLRQENGFGFRIVG---GTEEGSQ---VSIGHIVPGGAADLDGRLCTGDEI 869
+ ++ + L + E+G G I+G G + G + + + + GGAA DGR+ D+I
Sbjct: 2 HMELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQI 60
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase 1
Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase 1
Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 1036 IELSRGTRGFGFSIRG---GRE--FQNMALFVLQIAENGPAALDGHLKVGDEIVEINGIN 1090
+EL + G G SI G G + + + +FV + E G A DG ++V D+IVE++GI+
Sbjct: 84 VELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGIS 143
Query: 1091 TKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+T A ++RN VR +I R
Sbjct: 144 LVGVTQNFAATVLRNTKGNVRFVIGR 169
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 813 KSVEYSDVMVITLLRQENGFGFRIVG---GTEEGSQ---VSIGHIVPGGAADLDGRLCTG 866
K VE ++ + L + E+G G I+G G + G + + + + GGAA DGR+
Sbjct: 74 KRVEKLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVN 133
Query: 867 DEI 869
D+I
Sbjct: 134 DQI 136
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 928 RENEGFGFVII-------SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSL 980
++ +G G II + L K G + + E A R G + + D I+ V+ + ++ +
Sbjct: 88 KDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGV 147
Query: 981 HHGEIVNLIKDSGYCVTLTIG 1001
+++++ V IG
Sbjct: 148 TQNFAATVLRNTKGNVRFVIG 168
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 1044 GFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEII 1103
G G S+RGG EF LF+ + + G A G L+VGDEIV ING + + TH E I +I
Sbjct: 97 GLGLSVRGGLEF-GCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLI 154
Query: 1104 RNGDSTVRLLIKRGGSV 1120
R + TV + ++ G +
Sbjct: 155 RT-EKTVSIKVRHIGLI 170
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 831 GFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXXXXXXHHHVVELM 889
G G + GG E G + I H++ GG AD G L GDEI H V+ L+
Sbjct: 97 GLGLSVRGGLEFGCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLI 154
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 922 DVTITRRENEGFGFVIISSLN-KAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSL 980
+V + R EG G + L G I +I+ AD G L +GD I+ +N I S
Sbjct: 87 EVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSC 145
Query: 981 HHGEIVNLIK 990
H E++NLI+
Sbjct: 146 THEEVINLIR 155
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 1045 FGFSIRGG----REFQN----MALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTH 1096
G SI GG + +N +F+ Q+ E+ PA LK GD+I+E++G++ +N +H
Sbjct: 29 LGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASH 88
Query: 1097 AEAIEIIRNGDSTVRLLIK 1115
+EA+E I+N + V +++
Sbjct: 89 SEAVEAIKNAGNPVVFIVQ 107
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 918 GYPYDVTITRRENEGFGFVIISSLNK----------AGSTIGRIIEDSPADRSGELHLGD 967
G P V I R N G I+ G I +++EDSPA ++ L GD
Sbjct: 14 GPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGD 73
Query: 968 HILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
IL V+ VD+ + H E V IK++G V +
Sbjct: 74 KILEVSGVDLQNASHSEAVEAIKNAGNPVVFIV 106
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 1036 IELSRGTRGFGFSIRGG--REFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKN 1093
+EL++ G S+ GG ++ ++V I G A DG + GD ++ +NG++ +
Sbjct: 8 VELAKTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG 67
Query: 1094 MTHAEAIEIIRNGDSTVRLLIKRG 1117
TH +A+E +RN V LL+++G
Sbjct: 68 ATHKQAVETLRNTGQVVHLLLEKG 91
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 434 GERIHSSLVKSLRGLGFTIVGGDDS--KEEFLQIKSVVPNGPAALEGHLQTGDVLVYVND 491
G+ L K+ LG ++ GG ++ + + +K+++P G A +G + GD ++ VN
Sbjct: 3 GDTFEVELAKTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNG 62
Query: 492 KCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
+ G TH V + + G+ V L + +G
Sbjct: 63 VSLEGATHKQAVETLR--NTGQVVHLLLEKG 91
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 939 SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTL 998
+S+ G + II A+ G +H GD +LAVN V + H + V ++++G V L
Sbjct: 27 TSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHL 86
Query: 999 TI 1000
+
Sbjct: 87 LL 88
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 819 DVMVITLLRQENGFGFRIVGGTEEGSQ---VSIGHIVPGGAADLDGRLCTGDEIXXXXXX 875
D + L + + G + GG + + + I+P GAA+ DGR+ GD +
Sbjct: 4 DTFEVELAKTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGV 63
Query: 876 XXXXXXHHHVVELM 889
H VE +
Sbjct: 64 SLEGATHKQAVETL 77
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human Cdna
Length = 110
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMA--LFVLQIAENGPAALDGHLKVGDEIVEINGINTKN 1093
+EL RG G G + G A L++ + PAA DG L +GD I+E+NG +
Sbjct: 12 VELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLG 71
Query: 1094 MTHAEAIEIIRNGDSTVRLLIKRGGSVVAPTDNAAGIYSSDTS 1136
+ + A+++IR+G +R L+ + + + A I+S +S
Sbjct: 72 LGYLRAVDLIRHGGKKMRFLVAK-----SDVETAKKIHSGPSS 109
Score = 37.0 bits (84), Expect = 0.059, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 918 GYPYDVTITRRENEGFGFVII----SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVN 973
GY + V + R + G G +I + L G I ++ SPA G L LGD IL VN
Sbjct: 7 GYVFTVELERGPS-GLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVN 65
Query: 974 HVDIMSLHHGEIVNLIKDSG 993
++ L + V+LI+ G
Sbjct: 66 GSSLLGLGYLRAVDLIRHGG 85
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 447 GLGFTIVGGDDSK--EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
GLG ++ G + L I++++P PAA +G L GD ++ VN +LG
Sbjct: 20 GLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLG 71
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 12/89 (13%)
Query: 1036 IELSRGTRGFGFSIR------GGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGI 1089
I+L +GT G GFSI GG + ++V I G A DG LK GD ++E+NG+
Sbjct: 9 IQLKKGTEGLGFSITSRDVTIGG----SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGV 64
Query: 1090 NTKNMTHAEAIEIIRNG--DSTVRLLIKR 1116
+ + E + ++R+ + TV LL+ R
Sbjct: 65 DLAGKSQEEVVSLLRSTKMEGTVSLLVFR 93
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 433 IGERIHSSLVKSLRGLGFTIVGGDDS--KEEFLQIKSVVPNGPAALEGHLQTGDVLVYVN 490
+G+R++ L K GLGF+I D + + +K+++P G A +G L+ GD L+ VN
Sbjct: 3 VGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVN 62
Query: 491 DKCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
+ G + ++VS+ +S TV L V R
Sbjct: 63 GVDLAGKSQEEVVSLLRSTKMEGTVSLLVFR 93
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 823 ITLLRQENGFGFRI------VGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXX 876
I L + G GF I +GG+ + + + +I+P GAA DGRL GD +
Sbjct: 9 IQLKKGTEGLGFSITSRDVTIGGS---APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD 65
Query: 877 XXXXXHHHVVELMGKASVYGRVTLGIRRK 905
VV L+ + G V+L + R+
Sbjct: 66 LAGKSQEEVVSLLRSTKMEGTVSLLVFRQ 94
Score = 33.1 bits (74), Expect = 0.80, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 927 RRENEGFGFVIISSLNKAGST----IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHH 982
++ EG GF I S G + + I+ A + G L GD ++ VN VD+
Sbjct: 12 KKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQ 71
Query: 983 GEIVNLIKDS 992
E+V+L++ +
Sbjct: 72 EEVVSLLRST 81
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 599 LTIPIVKGAMGFGFTIA--DSSHGQK----VKKILDRQRC---KNLAEGDILIEINNLNV 649
L I + KG G GF+I D + G VK IL R L GD LIE+N +++
Sbjct: 7 LNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDL 66
Query: 650 RNMCHGEVVQVLKDCQRNLEANIIVQR 676
EVV +L+ + +++V R
Sbjct: 67 AGKSQEEVVSLLRSTKMEGTVSLLVFR 93
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 1036 IELSRGTRGFGFSIRG-----GREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGIN 1090
+EL + G G SI G + + +FV + E G A DG ++V D+IVE++GI+
Sbjct: 13 VELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGIS 72
Query: 1091 TKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+T A ++RN VR +I R
Sbjct: 73 LVGVTQNFAATVLRNTKGNVRFVIGR 98
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz (Mupp-1)
Length = 103
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 1041 GTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAI 1100
G RG G + G + +F+ + E+ PA +G LK GD IVE++G++ ++ +H +A+
Sbjct: 24 GGRGMGSRLSNGEVMR--GIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAV 81
Query: 1101 EIIRNGDSTVRLLIK 1115
E IR + V +++
Sbjct: 82 EAIRKAGNPVVFMVQ 96
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 945 GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPI 1004
G I ++EDSPA ++G L GD I+ V+ +D+ H + V I+ +G V + + I
Sbjct: 40 GIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSII 99
Query: 1005 S 1005
S
Sbjct: 100 S 100
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 5/105 (4%)
Query: 421 ENYFF--TLNPDELIGERIHSSLVKSLRGLGFTIVGGDDS--KEEFLQIKSVVPNGPAAL 476
EN +F + N + IG+R++ L K GLGF+I D + + +K+++P G A
Sbjct: 15 ENLYFQGSYNTKK-IGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQ 73
Query: 477 EGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
+G L+ GD L+ VN ++G + ++VS+ +S TV L V R
Sbjct: 74 DGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFR 118
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 12/89 (13%)
Query: 1036 IELSRGTRGFGFSIR------GGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGI 1089
I+L +GT G GFSI GG + ++V I G A DG LK GD ++E+NG+
Sbjct: 34 IQLKKGTEGLGFSITSRDVTIGG----SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGV 89
Query: 1090 NTKNMTHAEAIEIIRNG--DSTVRLLIKR 1116
+ + E + ++R+ + TV LL+ R
Sbjct: 90 DLVGKSQEEVVSLLRSTKMEGTVSLLVFR 118
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 927 RRENEGFGFVIISS-LNKAGST---IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHH 982
++ EG GF I S + GS + I+ A + G L GD ++ VN VD++
Sbjct: 37 KKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQ 96
Query: 983 GEIVNLIKDS 992
E+V+L++ +
Sbjct: 97 EEVVSLLRST 106
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 823 ITLLRQENGFGFRI------VGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXX 876
I L + G GF I +GG+ + + + +I+P GAA DGRL GD +
Sbjct: 34 IQLKKGTEGLGFSITSRDVTIGGS---APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD 90
Query: 877 XXXXXHHHVVELMGKASVYGRVTLGIRRK 905
VV L+ + G V+L + R+
Sbjct: 91 LVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 599 LTIPIVKGAMGFGFTIA--DSSHGQK----VKKILDRQRC---KNLAEGDILIEINNLNV 649
L I + KG G GF+I D + G VK IL R L GD LIE+N +++
Sbjct: 32 LNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDL 91
Query: 650 RNMCHGEVVQVLKDCQRNLEANIIVQR 676
EVV +L+ + +++V R
Sbjct: 92 VGKSQEEVVSLLRSTKMEGTVSLLVFR 118
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 1032 QYHAIELSRG-TRGFGFSIRGGREFQNM--------ALFVLQIAENGPAALDGHLKVGDE 1082
Q +EL R ++ G SI GGR + +F+ + E+ PA +G LK GD
Sbjct: 24 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 83
Query: 1083 IVEINGINTKNMTHAEAIEIIRNGDSTVRLLIK 1115
IVE++G++ ++ +H +A+E IR + V +++
Sbjct: 84 IVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 116
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 945 GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPI 1004
G I ++EDSPA ++G L GD I+ V+ +D+ H + V I+ +G V + + I
Sbjct: 60 GIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSII 119
Query: 1005 S 1005
S
Sbjct: 120 S 120
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 572 DLYTSEKMVKLERPSSTDLILESDSEYLTIPIVKG-AMGFGFTIADSSHGQKVKKIL-DR 629
DL T + +P +L E S+ L I IV G MG + + G +K +L D
Sbjct: 12 DLGTENLYFQSMQPRRVELWREP-SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDS 70
Query: 630 QRCKN--LAEGDILIEINNLNVRNMCHGEVVQVLKDC 664
KN L GD ++E++ +++R+ H + V+ ++
Sbjct: 71 PAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKA 107
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 12/89 (13%)
Query: 1036 IELSRGTRGFGFSIR------GGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGI 1089
I+L +GT G GFSI GG + ++V I G A DG LK GD ++E+NG+
Sbjct: 15 IQLKKGTEGLGFSITSRDVTIGG----SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGV 70
Query: 1090 NTKNMTHAEAIEIIRNG--DSTVRLLIKR 1116
+ + E + ++R+ + TV LL+ R
Sbjct: 71 DLAGKSQEEVVSLLRSTKMEGTVSLLVFR 99
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 433 IGERIHSSLVKSLRGLGFTIVGGDDS--KEEFLQIKSVVPNGPAALEGHLQTGDVLVYVN 490
+G+R++ L K GLGF+I D + + +K+++P G A +G L+ GD L+ VN
Sbjct: 9 VGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVN 68
Query: 491 DKCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
+ G + ++VS+ +S TV L V R
Sbjct: 69 GVDLAGKSQEEVVSLLRSTKMEGTVSLLVFR 99
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 823 ITLLRQENGFGFRI------VGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXX 876
I L + G GF I +GG+ + + + +I+P GAA DGRL GD +
Sbjct: 15 IQLKKGTEGLGFSITSRDVTIGGS---APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD 71
Query: 877 XXXXXHHHVVELMGKASVYGRVTLGIRRK 905
VV L+ + G V+L + R+
Sbjct: 72 LAGKSQEEVVSLLRSTKMEGTVSLLVFRQ 100
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 599 LTIPIVKGAMGFGFTIA--DSSHGQK----VKKILDRQRC---KNLAEGDILIEINNLNV 649
L I + KG G GF+I D + G VK IL R L GD LIE+N +++
Sbjct: 13 LNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDL 72
Query: 650 RNMCHGEVVQVLKDCQRNLEANIIVQR 676
EVV +L+ + +++V R
Sbjct: 73 AGKSQEEVVSLLRSTKMEGTVSLLVFR 99
Score = 33.5 bits (75), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 927 RRENEGFGFVIISS-LNKAGST---IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHH 982
++ EG GF I S + GS + I+ A + G L GD ++ VN VD+
Sbjct: 18 KKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQ 77
Query: 983 GEIVNLIKDS 992
E+V+L++ +
Sbjct: 78 EEVVSLLRST 87
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase 1
Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase 1
Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNMAL-----FVLQIAENGPAALDGHLKVGDEIVEI 1086
+ +EL + + G G SI G +M L FV + E G A DG ++V D +VE+
Sbjct: 80 ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 139
Query: 1087 NGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+G + +T + A ++RN VR +I R
Sbjct: 140 DGTSLVGVTQSFAASVLRNTKGRVRFMIGR 169
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase 1
Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase 1
Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMAL-----FVLQIAENGPAALDGHLKVGDEIVEINGIN 1090
+EL + + G G SI G +M L FV + E G A DG ++V D +VE++G +
Sbjct: 84 VELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTS 143
Query: 1091 TKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+T + A ++RN VR +I R
Sbjct: 144 LVGVTQSFAASVLRNTKGRVRFMIGR 169
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 1036 IELSRGTRGFGFSIRG---GRE--FQNMALFVLQIAENGPAALDGHLKVGDEIVEINGIN 1090
+EL + + G G SI G G + + + +FV + E G A DG ++V D +VE++G +
Sbjct: 8 VELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTS 67
Query: 1091 TKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+T + A ++RN VR +I R
Sbjct: 68 LVGVTQSFAASVLRNTKGRVRFMIGR 93
>pdb|1VB7|A Chain A, Solution Structure Of The Pdz Domain Of Pdz And Lim Domain 2
Length = 94
Score = 50.4 bits (119), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 1041 GTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAI 1100
G +GF I GGR+F + V ++ E G A L+ GD IV ING + +NM HAEA
Sbjct: 14 GPAPWGFRISGGRDFHT-PIIVTKVTERGKAEA-ADLRPGDIIVAINGQSAENMLHAEAQ 71
Query: 1101 EIIRNGDSTVRLLIKR 1116
IR S +RL + R
Sbjct: 72 SKIRQSASPLRLQLDR 87
>pdb|2RRM|A Chain A, Interplay Between Phosphatidyl-Inositol-Phosphates And
Claudins Upon Binding To The 1st Pdz Domain Of Zonula
Occludens 1
Length = 100
Score = 50.1 bits (118), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 1026 GGEHDEQYHAIELSRGTR-GFGFSIRGGRE---FQN--MALFVLQIAENGPAALDGHLKV 1079
G +H + H + L R GFG +I GGR+ FQ+ ++ + + + GPA +G L+
Sbjct: 4 GSDHIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQE 61
Query: 1080 GDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
D + +NG++ N+ HA A++ +R ++ I+R
Sbjct: 62 NDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRR 98
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
Query: 1034 HAIELSRGTRG-FGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTK 1092
H++ + + G GFS+RGG E + +FV ++ E G +A L VGD+I E+NG++ +
Sbjct: 12 HSVRVEKSPAGRLGFSVRGGSE-HGLGIFVSKV-EEGSSAERAGLCVGDKITEVNGLSLE 69
Query: 1093 NMTHAEAIEIIRNGDSTVRLLIKRGGS 1119
+ T A++++ S + ++++R GS
Sbjct: 70 STTMGSAVKVL-TSSSRLHMMVRRMGS 95
>pdb|2UZC|A Chain A, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|B Chain B, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|C Chain C, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|D Chain D, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|E Chain E, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
Length = 88
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 1041 GTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAI 1100
G +GF ++GG++F NM L + + + G AA ++++GD ++ I+GIN + MTH EA
Sbjct: 11 GPAPWGFRLQGGKDF-NMPLTISSLKDGGKAA-QANVRIGDVVLSIDGINAQGMTHLEAQ 68
Query: 1101 EIIRNGDSTVRLLIKR 1116
I+ ++ + ++R
Sbjct: 69 NKIKGCTGSLNMTLQR 84
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2 Domain
(Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 1036 IELSRGTRGFGFSI-----RGG--REFQNMALFVLQIAENGPAALDGHLKVGDEIVEING 1088
+EL++ G S+ +GG ++ ++V + G A DG + GD ++ +NG
Sbjct: 13 VELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNG 72
Query: 1089 INTKNMTHAEAIEIIRNGDSTVRLLIKRGGS 1119
++ + TH +A+E +RN V LL+++G S
Sbjct: 73 VSLEGATHKQAVETLRNTGQVVHLLLEKGQS 103
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 939 SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTL 998
+S+ G + +I A+ G +H GD +LAVN V + H + V ++++G V L
Sbjct: 37 TSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHL 96
Query: 999 TI 1000
+
Sbjct: 97 LL 98
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
+K+V+P G A +G + GD ++ VN + G TH V ++ G+ V L + +G
Sbjct: 46 VKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT--GQVVHLLLEKG 101
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 918 GYPYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDI 977
G P + ++++E + +GF + + G I I E SPA+++G L GD +L +N V +
Sbjct: 1 GSPRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLD-GDRVLRINGVFV 59
Query: 978 MSLHHGEIVNLIKDSGYCVTLTI 1000
H ++V L++ SG VTL +
Sbjct: 60 DKEEHAQVVELVRKSGNSVTLLV 82
Score = 38.9 bits (89), Expect = 0.017, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 1043 RGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEI 1102
+ +GF +R ++ + V++ E PA G L GD ++ ING+ HA+ +E+
Sbjct: 14 QNYGFFLRIEKDTDGHLIRVIE--EGSPAEKAGLLD-GDRVLRINGVFVDKEEHAQVVEL 70
Query: 1103 IRNGDSTVRLLIKRGGSVVAPTDNAAGIYSSDTSS 1137
+R ++V LL+ G S N + D ++
Sbjct: 71 VRKSGNSVTLLVLDGDSYEKAVKNQVDLKELDIAA 105
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz
Domain-Containing Protein 1
Length = 114
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
P + ++++E + +GF + + G I I E SPA+++G L GD +L +N V +
Sbjct: 14 PRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLD-GDRVLRINGVFVDK 72
Query: 980 LHHGEIVNLIKDSGYCVTLTI 1000
H ++V L++ SG VTL +
Sbjct: 73 EEHAQVVELVRKSGNSVTLLV 93
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 1045 FGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIR 1104
+GF +R ++ + V I E PA G L GD ++ ING+ HA+ +E++R
Sbjct: 27 YGFFLRIEKDTDGHLIRV--IEEGSPAEKAGLLD-GDRVLRINGVFVDKEEHAQVVELVR 83
Query: 1105 NGDSTVRLLIKRGGSVVAPTDNAAGIYSSD 1134
++V LL+ G S N + D
Sbjct: 84 KSGNSVTLLVLDGDSYEKAVKNQVDLKELD 113
>pdb|1WF7|A Chain A, Solution Structure Of The Pdz Domain Of Enigma Homologue
Protein
Length = 103
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 1045 FGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIR 1104
+GF ++GG++F NM L + + + G A+ H+++GD ++ I+GI+ + MTH EA I+
Sbjct: 17 WGFRLQGGKDF-NMPLTISSLKDGGKAS-QAHVRIGDVVLSIDGISAQGMTHLEAQNKIK 74
Query: 1105 NGDSTVRLLIKRGGSVVAPTDNAAG 1129
++ + ++R + ++G
Sbjct: 75 ACTGSLNMTLQRASAAAKSEPVSSG 99
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human
Cdna, Kiaa1095
Length = 107
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 1038 LSRGTRGFGFSIRGGREF-------QNMALFVLQIAENGPAALDGHLKVGDEIVEINGIN 1090
L R + GF+I GGR + +FV +I ++GPAA +G L++ D I+E+NG +
Sbjct: 14 LHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRD 73
Query: 1091 TKNMTHAEAIEIIRNGDSTVRLLIKR 1116
TH +A+E + + + + R
Sbjct: 74 LSRATHDQAVEAFKTAKEPIVVQVLR 99
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 448 LGFTIVGG-------DDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
LGF I+GG D S E + + +V +GPAA EG LQ D ++ VN + + TH
Sbjct: 21 LGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHD 80
Query: 501 DMVSVFQSISPGETVQLEVCR 521
V F++ E + ++V R
Sbjct: 81 QAVEAFKTAK--EPIVVQVLR 99
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
P + ++++E + +GF + + G I I E SPA+++G L GD +L +N V +
Sbjct: 2 PRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLD-GDRVLRINGVFVDK 60
Query: 980 LHHGEIVNLIKDSGYCVTLTI 1000
H ++V L++ SG VTL +
Sbjct: 61 EEHAQVVELVRKSGNSVTLLV 81
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 1045 FGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIR 1104
+GF +R ++ + V I E PA G L GD ++ ING+ HA+ +E++R
Sbjct: 15 YGFFLRIEKDTDGHLIRV--IEEGSPAEKAGLLD-GDRVLRINGVFVDKEEHAQVVELVR 71
Query: 1105 NGDSTVRLLIKRGGSVVAPTDNAAGIYSSDTSS 1137
++V LL+ G S N + D +
Sbjct: 72 KSGNSVTLLVLDGDSYEKAVKNQVDLKELDQEA 104
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 1036 IELSRGTRGFGFSI-----RGG--REFQNMALFVLQIAENGPAALDGHLKVGDEIVEING 1088
+EL++ G S+ +GG ++ ++V I G A DG + GD ++ +NG
Sbjct: 8 VELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNG 67
Query: 1089 INTKNMTHAEAIEIIRNGDSTVRLLIKRG 1117
++ + TH +A+E +RN V LL+++G
Sbjct: 68 VSLEGATHKQAVETLRNTGQVVHLLLEKG 96
Score = 37.4 bits (85), Expect = 0.052, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 939 SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTL 998
+S+ G + II A+ G +H GD +LAVN V + H + V ++++G V L
Sbjct: 32 TSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHL 91
Query: 999 TI 1000
+
Sbjct: 92 LL 93
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 434 GERIHSSLVKSLRGLGFTIV-----GGDDS--KEEFLQIKSVVPNGPAALEGHLQTGDVL 486
G+ L K+ LG ++ GG ++ + + +K+++P G A +G + GD +
Sbjct: 3 GDTFEVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRV 62
Query: 487 VYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
+ VN + G TH V ++ G+ V L + +G
Sbjct: 63 LAVNGVSLEGATHKQAVETLRNT--GQVVHLLLEKG 96
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 1041 GTRGFGFSIRGGREFQNMA---LFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
G+ G G S++G R +N A +FV I G A+ DG L+V D+++ +NG + +
Sbjct: 16 GSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQ 75
Query: 1098 EAIEIIRNGDST 1109
EA+E +R ST
Sbjct: 76 EAMETLRRSMST 87
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 447 GLGFTIVGGDDSKEEF----LQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
GLG + V G+ SKE + +KS++ G A+ +G L+ D L+ VN + +LG + +
Sbjct: 19 GLGVS-VKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEA 77
Query: 503 VSVFQ 507
+ +
Sbjct: 78 METLR 82
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 9/90 (10%)
Query: 1036 IELSRGTRGFGFSIRGG--------REFQNMALFVLQIAENGPAALDGHLKVGDEIVEIN 1087
I+ + G R G SIRGG R+ + +F+ +++ G A DG L+VG ++E+N
Sbjct: 15 IQKAPGER-LGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVN 73
Query: 1088 GINTKNMTHAEAIEIIRNGDSTVRLLIKRG 1117
+ +TH EA++++R+ T+ +L+ G
Sbjct: 74 QQSLLGLTHGEAVQLLRSVGDTLTVLVCDG 103
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 448 LGFTIVGG--------DDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTH 499
LG +I GG D +E + I V P G A +G L+ G L+ VN + +LG TH
Sbjct: 23 LGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTH 82
Query: 500 HDMVSVFQSISPGETVQLEVCRGY 523
+ V + +S+ G+T+ + VC G+
Sbjct: 83 GEAVQLLRSV--GDTLTVLVCDGF 104
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 945 GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
G I ++ A R G L +G +L VN ++ L HGE V L++ G +T+ +
Sbjct: 45 GIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLV 100
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 1031 EQYHAIELSR-GTRGFGFSIRGGR-----EFQNMALFVLQIAENGPAALDGHLKVGDEIV 1084
E H + L + G + FG I G + +F+ I + PA L G LKVGD I+
Sbjct: 4 ELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRIL 63
Query: 1085 EINGINTKNMTHAEAIEIIRNGDSTVRLLIK 1115
+NG + +N T I++I+ D + L I+
Sbjct: 64 SLNGKDVRNSTEQAVIDLIKEADFKIELEIQ 94
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 923 VTITRRENEGFGFVIIS-------SLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHV 975
VT+ + + FG I+ + G I I+ DSPA G L +GD IL++N
Sbjct: 9 VTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGK 68
Query: 976 DIMSLHHGEIVNLIKDSGYCVTLTI 1000
D+ + +++LIK++ + + L I
Sbjct: 69 DVRNSTEQAVIDLIKEADFKIELEI 93
Score = 35.0 bits (79), Expect = 0.25, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 432 LIGERIHSSLVKSL--RGLGFTIVGGD-----DSKEEFLQIKSVVPNGPAALEGHLQTGD 484
+ GE IH + + G IV G+ ++K + IK +VP+ PA L G L+ GD
Sbjct: 1 MAGELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGD 60
Query: 485 VLVYVNDKCVLGYTHHDMVSVFQ 507
++ +N K V T ++ + +
Sbjct: 61 RILSLNGKDVRNSTEQAVIDLIK 83
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With Ve-Cadherin
C-Terminus
Length = 111
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 1041 GTRGFGFSIRGGREFQNMA---LFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
G+ G G S++G R +N A +FV I G A+ DG L+V D+++ +NG + +
Sbjct: 19 GSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQ 78
Query: 1098 EAIEIIRNGDST 1109
EA+E +R ST
Sbjct: 79 EAMETLRRSMST 90
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 447 GLGFTIVGGDDSKEEF----LQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
GLG + V G+ SKE + +KS++ G A+ +G L+ D L+ VN + +LG + +
Sbjct: 22 GLGVS-VKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEA 80
Query: 503 VSVFQ 507
+ +
Sbjct: 81 METLR 85
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 1038 LSRGTRGFGFSIRG--GREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
L RG +G+GF + G GR Q F+ ++ PA L+ GD +VE+NG+N + T
Sbjct: 7 LVRGEQGYGFHLHGEKGRRGQ----FIRRVEPGSPAEA-AALRAGDRLVEVNGVNVEGET 61
Query: 1096 HAEAIEIIRNGDSTVRLLI 1114
H + ++ I+ + RLL+
Sbjct: 62 HHQVVQRIKAVEGQTRLLV 80
Score = 37.4 bits (85), Expect = 0.052, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
LV+ +G GF + G + +F I+ V P PA L+ GD LV VN V G THH
Sbjct: 7 LVRGEQGYGFHLHGEKGRRGQF--IRRVEPGSPAEAAA-LRAGDRLVEVNGVNVEGETHH 63
Query: 501 DMVSVFQSISPGETVQLEV 519
+V +++ G+T L V
Sbjct: 64 QVVQRIKAVE-GQTRLLVV 81
Score = 34.3 bits (77), Expect = 0.37, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 928 RENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVN 987
R +G+GF + + G I R+ SPA+ + L GD ++ VN V++ H ++V
Sbjct: 9 RGEQGYGFHLHGEKGRRGQFIRRVEPGSPAE-AAALRAGDRLVEVNGVNVEGETHHQVVQ 67
Query: 988 LIK 990
IK
Sbjct: 68 RIK 70
Score = 33.9 bits (76), Expect = 0.50, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 12/68 (17%)
Query: 603 IVKGAMGFGFTIADSSHGQKVKK--ILDRQRCKNLAE------GDILIEINNLNVRNMCH 654
+V+G G+GF + HG+K ++ + R + AE GD L+E+N +NV H
Sbjct: 7 LVRGEQGYGFHL----HGEKGRRGQFIRRVEPGSPAEAAALRAGDRLVEVNGVNVEGETH 62
Query: 655 GEVVQVLK 662
+VVQ +K
Sbjct: 63 HQVVQRIK 70
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 1041 GTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAI 1100
G+RG G SI G Q +F+ + +A G L++GD+IVE+NG++ N+ H EA+
Sbjct: 11 GSRGLGCSISSG-PIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAV 68
Query: 1101 EIIRNGDSTVRLLIKRGG 1118
++++ S ++ G
Sbjct: 69 NVLKSSRSLTISIVAAAG 86
Score = 34.3 bits (77), Expect = 0.37, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 923 VTITRRENEGFGFVIISS-LNKAGSTIGRIIEDSPADRSGE--LHLGDHILAVNHVDIMS 979
V I+ + G G I S + K G I + P S E L +GD I+ VN VD +
Sbjct: 5 VFISLVGSRGLGCSISSGPIQKPGIFISHV---KPGSLSAEVGLEIGDQIVEVNGVDFSN 61
Query: 980 LHHGEIVNLIKDS 992
L H E VN++K S
Sbjct: 62 LDHKEAVNVLKSS 74
Score = 30.4 bits (67), Expect = 5.6, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 638 GDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
GD ++E+N ++ N+ H E V VLK R+L +I+ R
Sbjct: 48 GDQIVEVNGVDFSNLDHKEAVNVLKS-SRSLTISIVAAAGR 87
>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like
Protein
Length = 108
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 441 LVKSLRGLGFTIVGGDDS---KEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGY 497
LVK +GLGF+I+ D + I+S+V +G A G L GD LV VN+ C+
Sbjct: 21 LVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNT 80
Query: 498 THHDMVSVFQSISPGETVQLEVCRG 522
+ + V + +++ PG V L +C G
Sbjct: 81 SLAEAVEILKAVPPG-LVHLGICSG 104
Score = 34.3 bits (77), Expect = 0.39, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 1036 IELSRGTRGFGFSIRGGREFQN------MALFVLQIAENGPAALDGHLKVGDEIVEINGI 1089
+EL + +G GFSI ++Q+ + + + +G A G L GD +V +N
Sbjct: 19 VELVKDCKGLGFSIL---DYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEY 75
Query: 1090 NTKNMTHAEAIEIIR 1104
N + AEA+EI++
Sbjct: 76 CLDNTSLAEAVEILK 90
>pdb|1TK7|A Chain A, Nmr Structure Of Ww Domains (Ww3-4) From Suppressor Of
Deltex
Length = 88
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRLCKFQKKLEDCSDDELPYGWERIDDPAYGTYYI 359
WEK VYF++H + T+ W DPR + L ++ LP GWE A +++
Sbjct: 17 WEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSL--INEGPLPPGWEIRYTAAGERFFV 74
Query: 360 DHVNKQTQYENP 371
DH ++T +E+P
Sbjct: 75 DHNTRRTTFEDP 86
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPR 326
WE YT GE +F+DHN+ +++ DPR
Sbjct: 61 WEIRYTAAGERFFVDHNTRRTTFEDPR 87
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 342 LPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQAK 376
LP GWE+ Y+++H N+ TQ+E+P Q +
Sbjct: 13 LPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQ 47
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 28/107 (26%)
Query: 1035 AIELSRGTRGFGFSIR-----------------------GGREFQNM----ALFVLQIAE 1067
+ L R ++GFGF++R GG++ + +FV Q+ E
Sbjct: 11 TVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKE 70
Query: 1068 NGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLI 1114
GPA + L GD I+++NG + T+++ I +I+N D+T+ L +
Sbjct: 71 GGPA-FEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSV 116
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQ 507
+K V GPA E L TGD ++ VN + V+G T+ ++++ Q
Sbjct: 65 VKQVKEGGPA-FEAGLCTGDRIIKVNGESVIGKTYSQVIALIQ 106
>pdb|2DWV|A Chain A, Solution Structure Of The Second Ww Domain From Mouse
Salvador Homolog 1 Protein (Mww45)
pdb|2DWV|B Chain B, Solution Structure Of The Second Ww Domain From Mouse
Salvador Homolog 1 Protein (Mww45)
Length = 49
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 342 LPYGWERIDDPAYGTYYIDHVNKQTQYENP 371
LP GWER++ +GTYY+DH NK+ QY +P
Sbjct: 14 LPPGWERVESSEFGTYYVDHTNKRAQYRHP 43
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The Carboxyl
Tail Peptide Of Glur2
Length = 87
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 1046 GFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIR- 1104
G SI GG ++ L+++Q+ +N PAALDG + GDEI +NG + K T E ++I+
Sbjct: 17 GISIGGGAQYCP-CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQE 75
Query: 1105 -NGDSTV 1110
G+ T+
Sbjct: 76 VKGEVTI 82
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 35/77 (45%)
Query: 440 SLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTH 499
+L K + L +GG L I V N PAAL+G + GD + VN + + G T
Sbjct: 7 TLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTK 66
Query: 500 HDMVSVFQSISPGETVQ 516
++ + Q + T+
Sbjct: 67 VEVAKMIQEVKGEVTIH 83
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1 (Casp
Target)
Length = 114
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 1046 GFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIR- 1104
G SI GG ++ L+++Q+ +N PAALDG + GDEI +NG + K T E ++I+
Sbjct: 39 GISIGGGAQYCP-CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQE 97
Query: 1105 -NGDSTV 1110
G+ T+
Sbjct: 98 VKGEVTI 104
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 423 YFFTLNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQT 482
YF ++ P ++ +L K + L +GG L I V N PAAL+G +
Sbjct: 19 YFQSMVPGKV-------TLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAA 71
Query: 483 GDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQ 516
GD + VN + + G T ++ + Q + T+
Sbjct: 72 GDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 105
>pdb|2H2C|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Derived
Ligand (Wrrttwv)
Length = 107
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 1032 QYHAIELSRGTR-GFGFSIRGGRE---FQN--MALFVLQIAENGPAALDGHLKVGDEIVE 1085
+ H + L R GFG +I GGR+ FQ+ ++ + + + GPA +G L+ D +
Sbjct: 7 EQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAM 64
Query: 1086 INGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+NG++ N+ HA A++ +R ++ I+R
Sbjct: 65 VNGVSMDNVEHAFAVQQLRKSGKNAKITIRR 95
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 914 SMMLGYPYDVTITRRENEGFGFVIISSLN----KAGST---IGRIIEDSPADRSGELHLG 966
S M+ + VT+ R GFG I + ++G T I +++ PA+ G+L
Sbjct: 2 SHMIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQEN 59
Query: 967 DHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
D + VN V + ++ H V ++ SG +TI
Sbjct: 60 DRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITI 93
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 1028 EHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEIN 1087
E+ E+ I L G+RG G SI G Q +F+ + +A G L++GD+IVE+N
Sbjct: 13 ENKEKKVFISLV-GSRGLGCSISSG-PIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVN 69
Query: 1088 GINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAPTDNAA 1128
G++ N+ H EA+ ++++ S ++ G + TD +
Sbjct: 70 GVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRELFMTDRSG 110
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 956 PADRSGE--LHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGA 1002
P S E L +GD I+ VN VD +L H E VN++K S +T++I A
Sbjct: 50 PGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-RSLTISIVA 97
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 635 LAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
L GD ++E+N ++ N+ H E V VLK R+L +I+ R
Sbjct: 59 LEIGDQIVEVNGVDFSNLDHKEAVNVLKS-SRSLTISIVAAAGR 101
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human Kiaa1526
Protein
Length = 101
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 1035 AIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNM 1094
++ ++ G GFSIRGG E + ++V + E G A L+VGD+I+ +N + +
Sbjct: 13 SLRRAKAHEGLGFSIRGGSE-HGVGIYV-SLVEPGSLAEKEGLRVGDQILRVNDKSLARV 70
Query: 1095 THAEAIEIIRNGDSTVRLLIKRGGSVVAPT 1124
THAEA++ ++ G + L + G + P+
Sbjct: 71 THAEAVKALK-GSKKLVLSVYSAGRISGPS 99
Score = 33.1 bits (74), Expect = 0.98, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 443 KSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
K+ GLGF+I GG + + + V P A EG L+ GD ++ VNDK + TH +
Sbjct: 18 KAHEGLGFSIRGGSEHGVG-IYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEA 75
Query: 503 VSVFQ 507
V +
Sbjct: 76 VKALK 80
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 819 DVMVITLLRQE--NGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXX 876
+V +++L R + G GF I GG+E G + + + PG A+ +G L GD+I
Sbjct: 8 EVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKS 66
Query: 877 XXXXXHHHVVELM 889
H V+ +
Sbjct: 67 LARVTHAEAVKAL 79
Score = 29.6 bits (65), Expect = 9.7, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 928 RENEGFGFVIIS-SLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIV 986
+ +EG GF I S + G + + S A++ G L +GD IL VN + + H E V
Sbjct: 18 KAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAV 76
Query: 987 NLIKDS 992
+K S
Sbjct: 77 KALKGS 82
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 924 TITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHG 983
+ R + G GF I+ + G I I+ PAD SGEL GD I++VN VD+ + H
Sbjct: 11 VVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHE 70
Query: 984 EIVNLIKDSGYCVTLT 999
+ +K++G VT+
Sbjct: 71 QAAAALKNAGQAVTIV 86
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+ L RG+ G GF+I GG + + +F+ I GPA L G L+ GD I+ +N ++ + +
Sbjct: 11 VVLHRGSTGLGFNIVGGEDGE--GIFISFILAGGPADLSGELRKGDRIISVNSVDLRAAS 68
Query: 1096 HAEAIEIIRNGDSTVRLLIK 1115
H +A ++N V ++ +
Sbjct: 69 HEQAAAALKNAGQAVTIVAQ 88
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 430 DELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYV 489
DE+ E L + GLGF IVGG+D + F I ++ GPA L G L+ GD ++ V
Sbjct: 2 DEITREPRKVVLHRGSTGLGFNIVGGEDGEGIF--ISFILAGGPADLSGELRKGDRIISV 59
Query: 490 N 490
N
Sbjct: 60 N 60
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 823 ITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEI 869
+ L R G GF IVGG E+G + I I+ GG ADL G L GD I
Sbjct: 11 VVLHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDRI 56
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl Tail
Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl Tail
Of Glur2
Length = 125
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 1046 GFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIR- 1104
G SI GG ++ L+++Q+ +N PAALDG + GDEI +NG + K T E ++I+
Sbjct: 34 GISIGGGAQYCP-CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQE 92
Query: 1105 -NGDSTV 1110
G+ T+
Sbjct: 93 VKGEVTI 99
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 37/85 (43%)
Query: 440 SLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTH 499
+L K + L +GG L I V N PAAL+G + GD + VN + + G T
Sbjct: 24 TLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTK 83
Query: 500 HDMVSVFQSISPGETVQLEVCRGYP 524
++ + Q + T+ + P
Sbjct: 84 VEVAKMIQEVKGEVTIHYNKLQADP 108
>pdb|2H2B|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-derived
Ligand (wrrttyl)
Length = 107
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 1032 QYHAIELSRGTR-GFGFSIRGGRE---FQN--MALFVLQIAENGPAALDGHLKVGDEIVE 1085
+ H + L R GFG +I GGR+ FQ+ ++ + + + GPA +G L+ D +
Sbjct: 7 EQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAM 64
Query: 1086 INGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+NG++ N+ HA A++ +R ++ I+R
Sbjct: 65 VNGVSMDNVEHAFAVQQLRKSGKNAKITIRR 95
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 914 SMMLGYPYDVTITRRENEGFGFVIISSLN----KAGST---IGRIIEDSPADRSGELHLG 966
S M+ + VT+ R GFG I + ++G T I +++ PA+ G+L
Sbjct: 2 SHMIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQEN 59
Query: 967 DHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
D + VN V + ++ H V ++ SG +TI
Sbjct: 60 DRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITI 93
>pdb|2CSJ|A Chain A, Solution Structure Of N-Terminal Pdz Domain From Mouse Tjp2
Length = 117
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 1031 EQYHAIELSRGTRGFGFSIRGGRE---FQN--MALFVLQIAENGPAALDGHLKVGDEIVE 1085
EQY RGFG ++ GGR+ F+N ++ + + GPA DG L+ D +V
Sbjct: 14 EQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQENDRVVM 71
Query: 1086 INGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSV-VAP 1123
+NG +++ H+ A++ +R +++KR V VAP
Sbjct: 72 VNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQVAP 110
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The C
Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The C
Tail Peptide Of Glur2
Length = 111
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1046 GFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIR 1104
G SI GG ++ L+++Q+ +N PAALDG + GDEI +NG + K T E ++I+
Sbjct: 20 GISIGGGAQYCP-GLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 77
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 37/85 (43%)
Query: 440 SLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTH 499
+L K + L +GG L I V N PAAL+G + GD + VN + + G T
Sbjct: 10 TLQKDAQNLIGISIGGGAQYCPGLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTK 69
Query: 500 HDMVSVFQSISPGETVQLEVCRGYP 524
++ + Q + T+ + P
Sbjct: 70 VEVAKMIQEVKGEVTIHYNKLQADP 94
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 925 ITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGE 984
+ R + G GF I+ + G I I+ PAD SGEL GD I++VN VD+ + H +
Sbjct: 9 VLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQ 68
Query: 985 IVNLIKDSGYCVTL 998
+K++G VT+
Sbjct: 69 AAAALKNAGQAVTI 82
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+ L RG+ G GF+I GG + + +F+ I GPA L G L+ GD I+ +N ++ + +
Sbjct: 8 VVLHRGSTGLGFNIVGGEDGE--GIFISFILAGGPADLSGELRKGDRIISVNSVDLRAAS 65
Query: 1096 HAEAIEIIRNGDSTVRLL 1113
H +A ++N V ++
Sbjct: 66 HEQAAAALKNAGQAVTIV 83
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 823 ITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEI 869
+ L R G GF IVGG E+G + I I+ GG ADL G L GD I
Sbjct: 8 VVLHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDRI 53
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVN 490
GLGF IVGG+D + F I ++ GPA L G L+ GD ++ VN
Sbjct: 16 GLGFNIVGGEDGEGIF--ISFILAGGPADLSGELRKGDRIISVN 57
>pdb|2H3M|A Chain A, Crystal Structure Of Zo-1 Pdz1
Length = 97
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 1032 QYHAIELSRGTR-GFGFSIRGGRE---FQN--MALFVLQIAENGPAALDGHLKVGDEIVE 1085
+ H + L R GFG +I GGR+ FQ+ ++ + + + GPA +G L+ D +
Sbjct: 7 EQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAM 64
Query: 1086 INGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+NG++ N+ HA A++ +R ++ I+R
Sbjct: 65 VNGVSMDNVEHAFAVQQLRKSGKNAKITIRR 95
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 914 SMMLGYPYDVTITRRENEGFGFVIISSLN----KAGST---IGRIIEDSPADRSGELHLG 966
S M+ + VT+ R GFG I + ++G T I +++ PA+ G+L
Sbjct: 2 SHMIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQEN 59
Query: 967 DHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
D + VN V + ++ H V ++ SG +TI
Sbjct: 60 DRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITI 93
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 1045 FGFSIRGGR---EFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIE 1101
FGF IRGG ++ + + + GPA +G +K GD ++ ++GI THAEA+
Sbjct: 16 FGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMS 75
Query: 1102 IIRNGDSTVRLLIK 1115
I++ LLI+
Sbjct: 76 ILKQCGQEAALLIE 89
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 448 LGFTIVGG---DDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVS 504
GF I GG D +K + I SV P GPA EG ++ GD L+ V+ +LG TH + +S
Sbjct: 16 FGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMS 75
Query: 505 VFQ 507
+ +
Sbjct: 76 ILK 78
Score = 36.6 bits (83), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 928 RENEGFGFVIISSL----NKAG-STIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHH 982
+E FGFVI NK+ I + PADR G + GD +L+V+ + ++ H
Sbjct: 11 KEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTH 70
Query: 983 GEIVNLIKDSGYCVTLTI 1000
E ++++K G L I
Sbjct: 71 AEAMSILKQCGQEAALLI 88
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 823 ITLLRQENGFGFRIVGGTEE----GSQVSIGHIVPGGAADLDGRLCTGDEI 869
+TL ++ N FGF I GG + V I + PGG AD +G + GD +
Sbjct: 7 VTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRL 57
>pdb|1RGW|A Chain A, Solution Structure Of Zasp's Pdz Domain
Length = 85
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 1041 GTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAI 1100
G +GF ++GG++F NM L + +I G A L GD +V I+G+NT MTH EA
Sbjct: 9 GPGPWGFRLQGGKDF-NMPLTISRITP-GSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQ 66
Query: 1101 EIIRNGDSTVRLLIKR 1116
I++ + L +++
Sbjct: 67 NKIKSASYNLSLTLQK 82
>pdb|1WJL|A Chain A, Solution Structure Of Pdz Domain Of Mouse Cypher Protein
Length = 90
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 1041 GTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAI 1100
G +GF ++GG++F NM L + +I G A L GD +V I+G+NT MTH EA
Sbjct: 16 GPGPWGFRLQGGKDF-NMPLTISRITP-GSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQ 73
Query: 1101 EIIRNGDSTVRLLIKR 1116
I++ + L +++
Sbjct: 74 NKIKSASYNLSLTLQK 89
>pdb|2LAW|A Chain A, Structure Of The Second Ww Domain From Human Yap In
Complex With A Human Smad1 Derived Peptide
Length = 38
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 24/28 (85%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
WE+A T+ GE+Y+I+H + T+SWLDPRL
Sbjct: 11 WEQAMTQDGEIYYINHKNKTTSWLDPRL 38
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine
Nucleotide Exchange Factor 11
Length = 93
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 1038 LSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
+ + GFGF++ G R + ++Q G AA+ +K GD I+++NG N +H
Sbjct: 14 IQKDQHGFGFTVSGDR------IVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHL 67
Query: 1098 EAIEIIRNG 1106
E +++I++G
Sbjct: 68 EVVKLIKSG 76
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 19/83 (22%)
Query: 925 ITRRENEGFGF-------VIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDI 977
I +++ GFGF V++ S+ G+ + +++ GD I+ VN +
Sbjct: 13 IIQKDQHGFGFTVSGDRIVLVQSVRPGGAAMKAGVKE-----------GDRIIKVNGTMV 61
Query: 978 MSLHHGEIVNLIKDSGYCVTLTI 1000
+ H E+V LIK Y V LT+
Sbjct: 62 TNSSHLEVVKLIKSGAY-VALTL 83
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz Domain
Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz Domain
Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz Domain
Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz Domain
Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 1038 LSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
L G G SI GG+E + + + +I PA G L VGD I+ +NG+N ++ H
Sbjct: 9 LKEDHEGLGISITGGKE-HGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHK 67
Query: 1098 EAIEII 1103
EA+ I+
Sbjct: 68 EAVTIL 73
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 923 VTITRRENEGFGFVIISSLNKAGST-IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
V + + ++EG G I I I PADR G LH+GD ILAVN V++
Sbjct: 6 VLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 65
Query: 982 HGEIVNLI 989
H E V ++
Sbjct: 66 HKEAVTIL 73
Score = 36.6 bits (83), Expect = 0.078, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 585 PSSTDLILESDSEYLTIPIVKGA-MGFGFTIADSSHGQKVKKILDRQRCKNLAEGDILIE 643
P L+L+ D E L I I G G I++ GQ RC L GD ++
Sbjct: 2 PIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPA------DRCGGLHVGDAILA 55
Query: 644 INNLNVRNMCHGEVVQVLKDCQRNLEANII 673
+N +N+R+ H E V +L + +E ++
Sbjct: 56 VNGVNLRDTKHKEAVTILSQQRGEIEFEVV 85
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 27/70 (38%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXXXXXX 881
V+ L G G I GG E G + I I PG AD G L GD I
Sbjct: 6 VLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 65
Query: 882 HHHVVELMGK 891
H V ++ +
Sbjct: 66 HKEAVTILSQ 75
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 1038 LSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
L G G SI GG+E + + + +I PA G L VGD I+ +NG+N ++ H
Sbjct: 16 LKEDHEGLGISITGGKE-HGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHK 74
Query: 1098 EAIEII 1103
EA+ I+
Sbjct: 75 EAVTIL 80
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 923 VTITRRENEGFGFVIISSLNKAGST-IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
V + + ++EG G I I I PADR G LH+GD ILAVN V++
Sbjct: 13 VLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 72
Query: 982 HGEIVNLI 989
H E V ++
Sbjct: 73 HKEAVTIL 80
Score = 36.6 bits (83), Expect = 0.078, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 585 PSSTDLILESDSEYLTIPIVKGA-MGFGFTIADSSHGQKVKKILDRQRCKNLAEGDILIE 643
P L+L+ D E L I I G G I++ GQ RC L GD ++
Sbjct: 9 PIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPA------DRCGGLHVGDAILA 62
Query: 644 INNLNVRNMCHGEVVQVLKDCQRNLEANII 673
+N +N+R+ H E V +L + +E ++
Sbjct: 63 VNGVNLRDTKHKEAVTILSQQRGEIEFEVV 92
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 27/70 (38%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXXXXXX 881
V+ L G G I GG E G + I I PG AD G L GD I
Sbjct: 13 VLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 72
Query: 882 HHHVVELMGK 891
H V ++ +
Sbjct: 73 HKEAVTILSQ 82
>pdb|2LTV|A Chain A, Yap Ww2 In Complex With A Smad7 Derived Peptide
Length = 36
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 24/28 (85%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
WE+A T+ GE+Y+I+H + T+SWLDPRL
Sbjct: 7 WEQAMTQDGEIYYINHKNKTTSWLDPRL 34
>pdb|2L4J|A Chain A, Yap Ww2
Length = 46
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 24/28 (85%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
WE+A T +GE+Y+I+H + T+SWLDPRL
Sbjct: 16 WEQAITPEGEIYYINHKNKTTSWLDPRL 43
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 342 LPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQAK 376
LP GWE+ P YYI+H NK T + +P L+ +
Sbjct: 12 LPEGWEQAITPEGEIYYINHKNKTTSWLDPRLETR 46
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 86/200 (43%), Gaps = 20/200 (10%)
Query: 922 DVTITRRENEGFGF-----VIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVD 976
+V +T GFG V + + I I DSPA+R G L +GD ++A+N +
Sbjct: 9 EVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIP 68
Query: 977 IMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDXXXXXXXXXXXHREYEEGGEHDEQYHAI 1036
E L++DS +T + I D H + + H++
Sbjct: 69 TEDSTFEEANQLLRDSS--ITSKVTLEIEFDVAESVIPSSGTFHVKL-------PKKHSV 119
Query: 1037 ELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTH 1096
EL G S R+ + L + I + A G L++GD+++ I+ I + +
Sbjct: 120 EL-----GITISSPSSRKPGD-PLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSM 173
Query: 1097 AEAIEIIRNGDSTVRLLIKR 1116
+A++I++ + V+L I++
Sbjct: 174 EDAVQILQQCEDLVKLKIRK 193
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 1029 HDEQYHAIELSRGTRGFGFSIRG---GREFQNMALFVLQIAENGPAALDGHLKVGDEIVE 1085
H E + + GFG ++G E + + I + PA G L++GD ++
Sbjct: 4 HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 63
Query: 1086 INGINTKNMTHAEAIEIIRNGDSTVRLLIK 1115
INGI T++ T EA +++R+ T ++ ++
Sbjct: 64 INGIPTEDSTFEEANQLLRDSSITSKVTLE 93
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 918 GYPYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDI 977
G P +TI+ E E F +IISSL K G A+R+G +H+GD ILA+N +
Sbjct: 15 GGPLGITISGTE-EPFDPIIISSLTKGGL----------AERTGAIHIGDRILAINSSSL 63
Query: 978 MSLHHGEIVNLIKDSGYCVTLTI 1000
E ++L++ +G VTL I
Sbjct: 64 KGKPLSEAIHLLQMAGETVTLKI 86
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 1034 HAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKN 1093
+ +EL R G +I G E + + + + + G A G + +GD I+ IN + K
Sbjct: 7 YTVELKRYGGPLGITISGTEEPFD-PIIISSLTKGGLAERTGAIHIGDRILAINSSSLKG 65
Query: 1094 MTHAEAIEIIRNGDSTVRLLIKR 1116
+EAI +++ TV L IK+
Sbjct: 66 KPLSEAIHLLQMAGETVTLKIKK 88
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With Beta2-
Ar And Pdgfr
Length = 91
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 1038 LSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
L +G G+GF + G E + ++ ++ E G A L GD +VE+NG N + TH
Sbjct: 9 LEKGPNGYGFHLHG--EKGKLGQYI-RLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQ 65
Query: 1098 EAIEIIRNGDSTVRLLI 1114
+ + IR + VRLL+
Sbjct: 66 QVVSRIRAALNAVRLLV 82
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 932 GFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKD 991
G+GF + K G I + SPA+++G L GD ++ VN ++ H ++V+ I+
Sbjct: 15 GYGFHLHGEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRA 73
Query: 992 SGYCVTLTIGAP 1003
+ V L + P
Sbjct: 74 ALNAVRLLVVDP 85
>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1) In
Complex With The C-Terminal Peptide Of The Metabotropic
Glutamate Receptor Type 1
pdb|2PNT|B Chain B, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1) In
Complex With The C-Terminal Peptide Of The Metabotropic
Glutamate Receptor Type 1
Length = 98
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 1045 FGFSIRG----GREFQN--MALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAE 1098
FGF I+ RE Q M FV ++ E+ PA L G L GD I +NG+N + + H E
Sbjct: 18 FGFEIQTYGLHHREEQRVEMVTFVCRVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHRE 76
Query: 1099 AIEIIRNGDSTVRL 1112
++II+ + +RL
Sbjct: 77 IVDIIKASGNVLRL 90
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 923 VTITRRENEGFGFVIIS--------SLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNH 974
+T+ + +N+ FGF I + + + + R+ E SPA +G L GD I +VN
Sbjct: 8 LTLEKEDNQTFGFEIQTYGLHHREEQRVEMVTFVCRVHESSPAQLAG-LTPGDTIASVNG 66
Query: 975 VDIMSLHHGEIVNLIKDSGYCVTL 998
+++ + H EIV++IK SG + L
Sbjct: 67 LNVEGIRHREIVDIIKASGNVLRL 90
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 1038 LSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
L +G G+GF + G E + ++ ++ E G A L GD +VE+NG N + TH
Sbjct: 8 LEKGPNGYGFHLHG--EKGKLGQYI-RLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQ 64
Query: 1098 EAIEIIRNGDSTVRLLI 1114
+ + IR + VRLL+
Sbjct: 65 QVVSRIRAALNAVRLLV 81
Score = 31.6 bits (70), Expect = 3.0, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 932 GFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKD 991
G+GF + K G I + SPA+++G L GD ++ VN ++ H ++V+ I+
Sbjct: 14 GYGFHLHGEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRA 72
Query: 992 SGYCVTLTIGAP 1003
+ V L + P
Sbjct: 73 ALNAVRLLVVDP 84
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 13/84 (15%)
Query: 1045 FGFSIRGG-----------REFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKN 1093
GFSI GG + + ++V +++E GPA + G L++GD+I+++NG +
Sbjct: 29 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTM 87
Query: 1094 MTHAEAIE-IIRNGDSTVRLLIKR 1116
+TH +A + + + + VRLL+ R
Sbjct: 88 VTHDQARKRLTKRSEEVVRLLVTR 111
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 1038 LSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
L +G G+GF + G E + ++ ++ E G A L GD +VE+NG N + TH
Sbjct: 9 LEKGPNGYGFHLHG--EKGKLGQYI-RLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQ 65
Query: 1098 EAIEIIRNGDSTVRLLI 1114
+ + IR + VRLL+
Sbjct: 66 QVVSRIRAALNAVRLLV 82
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 932 GFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKD 991
G+GF + K G I + SPA+++G L GD ++ VN ++ H ++V+ I+
Sbjct: 15 GYGFHLHGEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRA 73
Query: 992 SGYCVTLTIGAP 1003
+ V L + P
Sbjct: 74 ALNAVRLLVVDP 85
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 1038 LSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
L +G G+GF + G E + ++ ++ E G A L GD +VE+NG N + TH
Sbjct: 9 LEKGPNGYGFHLHG--EKGKLGQYI-RLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQ 65
Query: 1098 EAIEIIRNGDSTVRLLI 1114
+ + IR + VRLL+
Sbjct: 66 QVVSRIRAALNAVRLLV 82
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 932 GFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKD 991
G+GF + K G I + SPA+++G L GD ++ VN ++ H ++V+ I+
Sbjct: 15 GYGFHLHGEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRA 73
Query: 992 SGYCVTLTIGAP 1003
+ V L + P
Sbjct: 74 ALNAVRLLVVDP 85
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 13/84 (15%)
Query: 1045 FGFSIRGG-----------REFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKN 1093
GFSI GG + + ++V +++E GPA + G L++GD+I+++NG +
Sbjct: 29 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTM 87
Query: 1094 MTHAEAIE-IIRNGDSTVRLLIKR 1116
+TH +A + + + + VRLL+ R
Sbjct: 88 VTHDQARKRLTKRSEEVVRLLVTR 111
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 1031 EQYHAIELSRG-TRGFGFSIRG----GREFQN--MALFVLQIAENGPAALDGHLKVGDEI 1083
+Q + L +G + FGF I+ RE Q M FV ++ E+ PA L G L GD I
Sbjct: 3 QQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTI 61
Query: 1084 VEINGINTKNMTHAEAIEIIRNGDSTVRL 1112
+NG+N + + H E ++II+ + +RL
Sbjct: 62 ASVNGLNVEGIRHREIVDIIKASGNVLRL 90
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 923 VTITRRENEGFGFVIIS--------SLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNH 974
+T+ + +N+ FGF I + + + + R+ E SPA +G L GD I +VN
Sbjct: 8 LTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNG 66
Query: 975 VDIMSLHHGEIVNLIKDSGYCVTL 998
+++ + H EIV++IK SG + L
Sbjct: 67 LNVEGIRHREIVDIIKASGNVLRL 90
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz Domain
Length = 95
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 1044 GFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEII 1103
G G SI+GGRE M + + +I A L++GD I+ +NG + + TH +A++ +
Sbjct: 16 GLGISIKGGRE-NRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQAL 74
Query: 1104 RNGDSTVRLLIK 1115
+ V L +K
Sbjct: 75 KRAGKEVLLEVK 86
Score = 38.9 bits (89), Expect = 0.017, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 923 VTITRRENEGFGFVIISSL-NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
V + ++E G G I N+ I +I AD+S L LGD IL+VN D+
Sbjct: 7 VRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQAT 66
Query: 982 HGEIVNLIKDSGYCVTLTI 1000
H + V +K +G V L +
Sbjct: 67 HDQAVQALKRAGKEVLLEV 85
Score = 33.5 bits (75), Expect = 0.67, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 823 ITLLRQE-NGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXXXXXX 881
+ +++QE G G I GG E + I I PG AAD L GD I
Sbjct: 7 VRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQAT 66
Query: 882 HHHVVELMGKA 892
H V+ + +A
Sbjct: 67 HDQAVQALKRA 77
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 13/84 (15%)
Query: 1045 FGFSIRGG-----------REFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKN 1093
GFSI GG + + ++V +++E GPA + G L++GD+I+++NG +
Sbjct: 29 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTM 87
Query: 1094 MTHAEAIE-IIRNGDSTVRLLIKR 1116
+TH +A + + + + VRLL+ R
Sbjct: 88 VTHDQARKRLTKRSEEVVRLLVTR 111
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 13/84 (15%)
Query: 1045 FGFSIRGG-----------REFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKN 1093
GFSI GG + + ++V +++E GPA + G L++GD+I+++NG +
Sbjct: 30 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTM 88
Query: 1094 MTHAEAIE-IIRNGDSTVRLLIKR 1116
+TH +A + + + + VRLL+ R
Sbjct: 89 VTHDQARKRLTKRSEEVVRLLVTR 112
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 1035 AIELSRGTRGFGFSIRGGREFQNMALFVLQIAENG-PAALDGHLKVGDEIVEINGINTKN 1093
++E++RG G+GF++ G A VL G PA G L+ GD+I+ +N IN K
Sbjct: 5 SVEVARGRAGYGFTLSG------QAPCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKK 57
Query: 1094 MTHAEAIEIIRNGDSTVRLLIKRG 1117
+H + +++I + ++I G
Sbjct: 58 ASHEDVVKLIGKCSGVLHMVIAEG 81
Score = 38.1 bits (87), Expect = 0.028, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 928 RENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVN 987
R G+GF + +A + ++ SPAD G L GD ILAVN +++ H ++V
Sbjct: 10 RGRAGYGFTLSG---QAPCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVK 65
Query: 988 LI 989
LI
Sbjct: 66 LI 67
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 600 TIPIVKGAMGFGFTIADSSHGQKVKKILDRQRCKN---LAEGDILIEINNLNVRNMCHGE 656
++ + +G G+GFT+ S V + R + L GD ++ +N +NV+ H +
Sbjct: 5 SVEVARGRAGYGFTL--SGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHED 62
Query: 657 VVQVLKDC 664
VV+++ C
Sbjct: 63 VVKLIGKC 70
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 821 MVITLLRQENGFGFRIVGGTEEGSQ---VSIGHIVPGGAADLDGRLCTGDEIXXXXXXXX 877
++ L+++NG G IV G + + +V GGAAD+DGRL GD++
Sbjct: 6 IITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSL 65
Query: 878 XXXXHHHVVELMGKAS 893
ELM + S
Sbjct: 66 VGLSQERAAELMTRTS 81
Score = 38.1 bits (87), Expect = 0.026, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 1044 GFGFSIRG--GREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIE 1101
G G SI G + ++V + + G A +DG L GD+++ ++G + ++ A E
Sbjct: 16 GMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAE 75
Query: 1102 IIRNGDSTVRLLIKRGGSV 1120
++ S V L + + G++
Sbjct: 76 LMTRTSSVVTLEVAKQGAL 94
Score = 37.4 bits (85), Expect = 0.046, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 442 VKSLRGLGFTIVGGDDSKEEFLQI--KSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTH 499
+K G+G +IV + ++ L I KSVV G A ++G L GD L+ V+ + ++G +
Sbjct: 11 LKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQ 70
Query: 500 HDMVSVFQSISPGETVQLEVCR 521
+ S V LEV +
Sbjct: 71 ERAAELMTRTS--SVVTLEVAK 90
Score = 37.0 bits (84), Expect = 0.068, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 920 PYDVTITRRENEGFGFVIISS----LNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHV 975
P +T+T ++ G G I+++ +K G + +++ AD G L GD +L+V+
Sbjct: 4 PEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 63
Query: 976 DIMSLHHGEIVNLIKDSGYCVTLTIG 1001
++ L L+ + VTL +
Sbjct: 64 SLVGLSQERAAELMTRTSSVVTLEVA 89
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 821 MVITLLRQENGFGFRIVGGTEEGSQ---VSIGHIVPGGAADLDGRLCTGDEIXXXXXXXX 877
++ L+++NG G IV G + + +V GGAAD+DGRL GD++
Sbjct: 6 IITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSL 65
Query: 878 XXXXHHHVVELMGKAS 893
ELM + S
Sbjct: 66 VGLSQERAAELMTRTS 81
Score = 37.7 bits (86), Expect = 0.033, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 1044 GFGFSIRG--GREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIE 1101
G G SI G + ++V + + G A +DG L GD+++ ++G + ++ A E
Sbjct: 16 GMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAE 75
Query: 1102 IIRNGDSTVRLLIKRGGS 1119
++ S V L + + G+
Sbjct: 76 LMTRTSSVVTLEVAKQGA 93
Score = 37.4 bits (85), Expect = 0.047, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 442 VKSLRGLGFTIVGGDDSKEEFLQI--KSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTH 499
+K G+G +IV + ++ L I KSVV G A ++G L GD L+ V+ + ++G +
Sbjct: 11 LKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQ 70
Query: 500 HDMVSVFQSISPGETVQLEVCR 521
+ S V LEV +
Sbjct: 71 ERAAELMTRTS--SVVTLEVAK 90
Score = 37.0 bits (84), Expect = 0.069, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 920 PYDVTITRRENEGFGFVIISS----LNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHV 975
P +T+T ++ G G I+++ +K G + +++ AD G L GD +L+V+
Sbjct: 4 PEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 63
Query: 976 DIMSLHHGEIVNLIKDSGYCVTLTIG 1001
++ L L+ + VTL +
Sbjct: 64 SLVGLSQERAAELMTRTSSVVTLEVA 89
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 13/84 (15%)
Query: 1045 FGFSIRGG-----------REFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKN 1093
GFSI GG + + ++V +++E GPA + G L++GD+I+++NG +
Sbjct: 40 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTM 98
Query: 1094 MTHAEAIE-IIRNGDSTVRLLIKR 1116
+TH +A + + + + VRLL+ R
Sbjct: 99 VTHDQARKRLTKRSEEVVRLLVTR 122
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of Alpha-
Syntrophin
Length = 263
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 1044 GFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEII 1103
G G SI+GGRE M + + +I + A L VGD I+ +NG + + TH EA++ +
Sbjct: 90 GLGISIKGGRE-NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQAL 148
Query: 1104 RNGDSTVRLLIKRGGSVVAPTDNAAG 1129
+ V L +K V N+AG
Sbjct: 149 KKTGKEVVLEVKYMKEVSPYFKNSAG 174
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 909 PAETTSMMLGYPYDVTITRRENEGFGFVIISSL-NKAGSTIGRIIEDSPADRSGELHLGD 967
P + +L VT+ + + G G I NK I +I + AD++ L +GD
Sbjct: 67 PPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGD 126
Query: 968 HILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
IL+VN D+ S H E V +K +G V L +
Sbjct: 127 AILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 159
Score = 30.0 bits (66), Expect = 8.2, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 622 KVKKILDRQRCKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQH 681
K+ K L + + L GD ++ +N ++ + H E VQ LK + + +
Sbjct: 109 KIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM------ 162
Query: 682 KKTSPPFRSK---TPTEMYTRPKEIVARRPKTPLVDTRSRSKTPTENYSEYYINKELKDL 738
K+ SP F++ T + P + R+P +P R+ S+ + Y+++
Sbjct: 163 KEVSPYFKNSAGGTSVGWDSPPASPLQRQPSSPGPQPRNLSEAKHVSLKMAYVSRRCTPT 222
Query: 739 D 739
D
Sbjct: 223 D 223
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery Of
Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 821 MVITLLRQENGFGFRIVGGTEEGSQ---VSIGHIVPGGAADLDGRLCTGDEIXXXXXXXX 877
++ L+++NG G IV G + + +V GGAAD+DGRL GD++
Sbjct: 12 IITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSL 71
Query: 878 XXXXHHHVVELMGKAS 893
ELM + S
Sbjct: 72 VGLSQERAAELMTRTS 87
Score = 38.9 bits (89), Expect = 0.019, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 1044 GFGFSIRG--GREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIE 1101
G G SI G + ++V + + G A +DG L GD+++ ++G + ++ A E
Sbjct: 22 GMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAE 81
Query: 1102 IIRNGDSTVRLLIKRGGSV 1120
++ S V L + + G++
Sbjct: 82 LMTRTSSVVTLEVAKQGAI 100
Score = 37.4 bits (85), Expect = 0.054, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 442 VKSLRGLGFTIVGGDDSKEEFLQI--KSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTH 499
+K G+G +IV + ++ L I KSVV G A ++G L GD L+ V+ + ++G +
Sbjct: 17 LKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQ 76
Query: 500 HDMVSVFQSISPGETVQLEVCR 521
+ S V LEV +
Sbjct: 77 ERAAELMTRTS--SVVTLEVAK 96
Score = 36.6 bits (83), Expect = 0.080, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 920 PYDVTITRRENEGFGFVIISS----LNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHV 975
P +T+T ++ G G I+++ +K G + +++ AD G L GD +L+V+
Sbjct: 10 PEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 69
Query: 976 DIMSLHHGEIVNLIKDSGYCVTLTIG 1001
++ L L+ + VTL +
Sbjct: 70 SLVGLSQERAAELMTRTSSVVTLEVA 95
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
Length = 106
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 821 MVITLLRQENGFGFRIVGGTEEGSQ---VSIGHIVPGGAADLDGRLCTGDEIXXXXXXXX 877
++ L+++NG G IV G + + +V GGAAD+DGRL GD++
Sbjct: 12 IITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSL 71
Query: 878 XXXXHHHVVELMGKAS 893
ELM + S
Sbjct: 72 VGLSQERAAELMTRTS 87
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 1026 GGEHDEQYHAIELSRGTRGFGFSIRG--GREFQNMALFVLQIAENGPAALDGHLKVGDEI 1083
G +H E + G G SI G + ++V + + G A +DG L GD++
Sbjct: 4 GSDHKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQL 63
Query: 1084 VEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSV 1120
+ ++G + ++ A E++ S V L + + G++
Sbjct: 64 LSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAI 100
Score = 37.0 bits (84), Expect = 0.057, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 442 VKSLRGLGFTIVGGDDSKEEFLQI--KSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTH 499
+K G+G +IV + ++ L I KSVV G A ++G L GD L+ V+ + ++G +
Sbjct: 17 LKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQ 76
Query: 500 HDMVSVFQSISPGETVQLEVCR 521
+ S V LEV +
Sbjct: 77 ERAAELMTRTS--SVVTLEVAK 96
Score = 36.6 bits (83), Expect = 0.086, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 920 PYDVTITRRENEGFGFVIISS----LNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHV 975
P +T+T ++ G G I+++ +K G + +++ AD G L GD +L+V+
Sbjct: 10 PEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 69
Query: 976 DIMSLHHGEIVNLIKDSGYCVTLTIG 1001
++ L L+ + VTL +
Sbjct: 70 SLVGLSQERAAELMTRTSSVVTLEVA 95
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 1044 GFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEII 1103
G G SI GG+E + + + +I PA G L VGD I+ +NG+N ++ H EA+ I+
Sbjct: 40 GLGISITGGKE-HGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTIL 98
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 923 VTITRRENEGFGFVIISSLNKAGST-IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
V + + ++EG G I I I PADR G LH+GD ILAVN V++
Sbjct: 31 VLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 90
Query: 982 HGEIVNLI 989
H E V ++
Sbjct: 91 HKEAVTIL 98
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 590 LILESDSEYLTIPIVKGA-MGFGFTIADSSHGQKVKKILDRQRCKNLAEGDILIEINNLN 648
L+L+ D E L I I G G I++ GQ RC L GD ++ +N +N
Sbjct: 32 LLLKEDHEGLGISITGGKEHGVPILISEIHPGQPA------DRCGGLHVGDAILAVNGVN 85
Query: 649 VRNMCHGEVVQVLKDCQRNLEANII 673
+R+ H E V +L + +E ++
Sbjct: 86 LRDTKHKEAVTILSQQRGEIEFEVV 110
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 811 NIKSVEYSDVMVITLLRQEN-GFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEI 869
+++++ + + + LL++++ G G I GG E G + I I PG AD G L GD I
Sbjct: 19 HMENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAI 78
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 1030 DEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGI 1089
DE+ + L G R G +IRGG E+ + +++ + + G A LKVGD+I+E+NG
Sbjct: 20 DEKKVNLVLGDG-RSLGLTIRGGAEY-GLGIYITGV-DPGSEAEGSGLKVGDQILEVNGR 76
Query: 1090 NTKNMTHAEAIEIIRN 1105
+ N+ H EA+ ++++
Sbjct: 77 SFLNILHDEAVRLLKS 92
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 13/84 (15%)
Query: 1045 FGFSIRGG-----------REFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKN 1093
GFSI GG + + ++V +++E GPA + G L++GD+I+++NG +
Sbjct: 19 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTM 77
Query: 1094 MTHAEAIE-IIRNGDSTVRLLIKR 1116
+TH +A + + + + VRLL+ R
Sbjct: 78 VTHDQARKRLTKRSEEVVRLLVTR 101
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 13/84 (15%)
Query: 1045 FGFSIRGG-----------REFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKN 1093
GFSI GG + + ++V +++E GPA + G L++GD+I+++NG +
Sbjct: 21 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTM 79
Query: 1094 MTHAEAIE-IIRNGDSTVRLLIKR 1116
+TH +A + + + + VRLL+ R
Sbjct: 80 VTHDQARKRLTKRSEEVVRLLVTR 103
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 9/79 (11%)
Query: 1045 FGFSIRGG-----REFQ--NMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
GFSI GG F+ + +FV ++ GPA+ L+ GD+I++ NG + N+ H
Sbjct: 4 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHG 61
Query: 1098 EAIEIIRNGDSTVRLLIKR 1116
+A+ +++ +TV L+I R
Sbjct: 62 QAVSLLKTFQNTVELIIVR 80
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 632 CKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQ---------RSRLQHK 682
K L GD +I+ N + N+ HG+ V +LK Q +E I+ + R R++
Sbjct: 38 SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKD 97
Query: 683 KTSPPFRSKTPTEMYTRPKEIVARRPKTPLV 713
S S PT + E+VA P + L+
Sbjct: 98 GGSGGV-SSVPTNL-----EVVAATPTSLLI 122
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 1041 GTRGFGFSIRGG-----REFQ--NMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKN 1093
G+ GFSI GG F+ + +FV ++ GPA+ L+ GD+I++ NG + N
Sbjct: 1 GSPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFIN 58
Query: 1094 MTHAEAIEIIRNGDSTVRLLIKR 1116
+ H +A+ +++ +TV L+I R
Sbjct: 59 IEHGQAVSLLKTFQNTVELIIVR 81
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 15/108 (13%)
Query: 632 CKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQ---------RSRLQHK 682
K L GD +I+ N + N+ HG+ V +LK Q +E I+ + R R++
Sbjct: 39 SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKD 98
Query: 683 KTSPPFRSKTPTEMYTRPKEIVARRPKTPLVDTRSRSKTPTENYSEYY 730
S S PT + E+VA P + L+ + + P Y Y
Sbjct: 99 GGSGGV-SSVPTNL-----EVVAATPTSLLISWDAYRELPVSYYRITY 140
>pdb|2EDP|A Chain A, Solution Structure Of The Pdz Domain From Human Shroom
Family Member 4
Length = 100
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
QY ++L G +GF+++GG E L V +I + G AAL ++ GDE+V ING
Sbjct: 11 QYVPVQLQGGAP-WGFTLKGGLE-HCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPL 68
Query: 1092 KNMTHAEAIEIIRNGDSTVRLLIKR 1116
+ EA+ +I+ ++L+++R
Sbjct: 69 YG-SRQEALILIKGSFRILKLIVRR 92
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 449 GFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
GFT+ GG + E L + + G AAL ++TGD LV +N + G ++ +
Sbjct: 24 GFTLKGGLEHCEP-LTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGSRQEALILI 79
>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex Reveals A
Class I Pdz Interaction And A Novel Pdz-pdz Dimerization
pdb|1Q3O|B Chain B, Crystal Structure Of The Shank Pdz-ligand Complex Reveals A
Class I Pdz Interaction And A Novel Pdz-pdz Dimerization
pdb|1Q3P|A Chain A, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals A
Class I Pdz Interaction And A Novel Pdz-Pdz Dimerization
pdb|1Q3P|B Chain B, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals A
Class I Pdz Interaction And A Novel Pdz-Pdz Dimerization
Length = 109
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 1040 RGTRGFGFSIRGGR------EFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEINGI 1089
+ + GFGF +RG + EF AL L+ + G A L++GD ++E+NG
Sbjct: 16 KDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQ 75
Query: 1090 NTKNMTHAEAIEIIRNGDSTV 1110
N + H + + +IR G +T+
Sbjct: 76 NVVKVGHRQVVNMIRQGGNTL 96
Score = 34.7 bits (78), Expect = 0.34, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 18/86 (20%)
Query: 923 VTITRRENEGFGFVIISSLNKAGSTIGR---------------IIEDSPADRSGELHLGD 967
V + ++++EGFGFV+ + KA + I + E A R+G L +GD
Sbjct: 11 VLLQKKDSEGFGFVLRGA--KAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGD 67
Query: 968 HILAVNHVDIMSLHHGEIVNLIKDSG 993
++ VN +++ + H ++VN+I+ G
Sbjct: 68 FLIEVNGQNVVKVGHRQVVNMIRQGG 93
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 923 VTITRRENEGFGFVIIS--------SLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNH 974
VT+ +++NE FGF I S ++ + I +I EDSPA +G L GD + +N
Sbjct: 19 VTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANING 77
Query: 975 VDIMSLHHGEIVNLIKDSGYCVTL 998
V + ++V+LI+ SG +T+
Sbjct: 78 VSTEGFTYKQVVDLIRSSGNLLTI 101
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 1045 FGFSIRGGR-EFQN-----MALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAE 1098
FGF I+ R + QN M + +I E+ PA G L+ GD + ING++T+ T+ +
Sbjct: 29 FGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQ 87
Query: 1099 AIEIIRN 1105
+++IR+
Sbjct: 88 VVDLIRS 94
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 458 SKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQS 508
S E F I + + PA G LQ GDVL +N G+T+ +V + +S
Sbjct: 45 SSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIRS 94
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 156 GELNGVDYTFLSIEEFKQLEKSGCLLESGLYEGNHYGT 193
GE+NG DY F+S++EFK + K+ +E + GN+YG+
Sbjct: 44 GEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS 81
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 156 GELNGVDYTFLSIEEFKQLEKSGCLLESGLYEGNHYGT 193
GE+NG DY F+S++EFK + K+ +E + GN+YG+
Sbjct: 43 GEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS 80
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 156 GELNGVDYTFLSIEEFKQLEKSGCLLESGLYEGNHYGT 193
GE+NG DY F+S++EFK + K+ +E + GN+YG+
Sbjct: 59 GEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS 96
>pdb|3TAU|A Chain A, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
pdb|3TAU|B Chain B, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
Length = 208
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%)
Query: 155 DGELNGVDYTFLSIEEFKQLEKSGCLLESGLYEGNHYGTP 194
+GE +GVDY F S E F+Q K G LE Y GN+YGTP
Sbjct: 49 EGEQDGVDYYFRSREVFEQAIKDGKXLEYAEYVGNYYGTP 88
>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important For
Its Binding To Different Ligands
pdb|3QJM|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important For
Its Binding To Different Ligands
pdb|3QJN|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important For
Its Binding To Different Ligands
pdb|3QJN|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important For
Its Binding To Different Ligands
pdb|3QJN|C Chain C, Structural Flexibility Of Shank Pdz Domain Is Important For
Its Binding To Different Ligands
pdb|3QJN|D Chain D, Structural Flexibility Of Shank Pdz Domain Is Important For
Its Binding To Different Ligands
pdb|3QJN|E Chain E, Structural Flexibility Of Shank Pdz Domain Is Important For
Its Binding To Different Ligands
pdb|3QJN|F Chain F, Structural Flexibility Of Shank Pdz Domain Is Important For
Its Binding To Different Ligands
pdb|3QJN|G Chain G, Structural Flexibility Of Shank Pdz Domain Is Important For
Its Binding To Different Ligands
pdb|3QJN|H Chain H, Structural Flexibility Of Shank Pdz Domain Is Important For
Its Binding To Different Ligands
Length = 115
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 1040 RGTRGFGFSIRGGR------EFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEINGI 1089
+ + GFGF +RG + EF AL L+ + G A L++GD ++E+NG
Sbjct: 16 KDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQ 75
Query: 1090 NTKNMTHAEAIEIIRNGDSTV 1110
N + H + + +IR G +T+
Sbjct: 76 NVVKVGHRQVVNMIRQGGNTL 96
Score = 34.3 bits (77), Expect = 0.38, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 18/86 (20%)
Query: 923 VTITRRENEGFGFVIISSLNKAGSTIGR---------------IIEDSPADRSGELHLGD 967
V + ++++EGFGFV+ + KA + I + E A R+G L +GD
Sbjct: 11 VLLQKKDSEGFGFVLRGA--KAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGD 67
Query: 968 HILAVNHVDIMSLHHGEIVNLIKDSG 993
++ VN +++ + H ++VN+I+ G
Sbjct: 68 FLIEVNGQNVVKVGHRQVVNMIRQGG 93
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 1031 EQYHAIELSRG-TRGFGFSIRG----GREFQNM--ALFVLQIAENGPAALDGHLKVGDEI 1083
+Q + L +G + FGF I+ RE Q + FV ++ E+ PA L G L GD I
Sbjct: 3 QQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEXVTFVARVHESSPAQLAG-LTPGDTI 61
Query: 1084 VEINGINTKNMTHAEAIEIIRNGDSTVRL 1112
+NG+N + + H E ++II+ + +RL
Sbjct: 62 ASVNGLNVEGIRHREIVDIIKASGNVLRL 90
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 923 VTITRRENEGFGFVIIS--------SLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNH 974
+T+ + +N+ FGF I + + + + R+ E SPA +G L GD I +VN
Sbjct: 8 LTLEKGDNQTFGFEIQTYGLHHREEQRVEXVTFVARVHESSPAQLAG-LTPGDTIASVNG 66
Query: 975 VDIMSLHHGEIVNLIKDSGYCVTL 998
+++ + H EIV++IK SG + L
Sbjct: 67 LNVEGIRHREIVDIIKASGNVLRL 90
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 1044 GFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEII 1103
G G SI+GGRE M + + +I + A L VGD I+ +NG + + TH EA++ +
Sbjct: 13 GLGISIKGGRE-NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQAL 71
Query: 1104 RNGDSTVRLLIK 1115
+ V L +K
Sbjct: 72 KKTGKEVVLEVK 83
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 923 VTITRRENEGFGFVIISSL-NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
VT+ + + G G I NK I +I + AD++ L +GD IL+VN D+ S
Sbjct: 4 VTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT 63
Query: 982 HGEIVNLIKDSGYCVTLTI 1000
H E V +K +G V L +
Sbjct: 64 HDEAVQALKKTGKEVVLEV 82
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 1044 GFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEII 1103
G G SI+GGRE M + + +I + A L VGD I+ +NG + + TH EA++ +
Sbjct: 17 GLGISIKGGRE-NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQAL 75
Query: 1104 RNGDSTVRLLIK 1115
+ V L +K
Sbjct: 76 KKTGKEVVLEVK 87
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 923 VTITRRENEGFGFVIISSL-NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
VT+ + + G G I NK I +I + AD++ L +GD IL+VN D+ S
Sbjct: 8 VTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT 67
Query: 982 HGEIVNLIKDSGYCVTLTI 1000
H E V +K +G V L +
Sbjct: 68 HDEAVQALKKTGKEVVLEV 86
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 1043 RGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEI 1102
+G G SI G R + +FV I + G A DG L GD+I+ +NG + +N T +
Sbjct: 16 KGLGLSIVGKR--NDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAAL 73
Query: 1103 IRNGDSTVRLLIKR 1116
++ TV L + R
Sbjct: 74 LKCSLGTVTLEVGR 87
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 923 VTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHH 982
+ + ++ +G G I+ N G + I++ AD G L GD IL VN D+ +
Sbjct: 8 IGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQ 67
Query: 983 GEIVNLIKDSGYCVTLTIG 1001
+ L+K S VTL +G
Sbjct: 68 EAVAALLKCSLGTVTLEVG 86
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 818 SDVMVITLLRQE-NGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXX 876
SD + I L ++ G G IVG + + V + IV GG AD DGRL GD+I
Sbjct: 3 SDTLTIGLQKKPGKGLGLSIVGKRND-TGVFVSDIVKGGIADADGRLMQGDQILMVNGED 61
Query: 877 XXXXXHHHVVELMGKASVYGRVTLGIRR 904
V L+ K S+ G VTL + R
Sbjct: 62 VRNATQEAVAALL-KCSL-GTVTLEVGR 87
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 1044 GFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEII 1103
G G SI+GGRE M + + +I + A L VGD I+ +NG + + TH EA++ +
Sbjct: 13 GLGISIKGGRE-NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQAL 71
Query: 1104 RNGDSTVRLLIK 1115
+ V L +K
Sbjct: 72 KKTGKEVVLEVK 83
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 923 VTITRRENEGFGFVIISSL-NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
VT+ + + G G I NK I +I + AD++ L +GD IL+VN D+ S
Sbjct: 4 VTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT 63
Query: 982 HGEIVNLIKDSGYCVTLTI 1000
H E V +K +G V L +
Sbjct: 64 HDEAVQALKKTGKEVVLEV 82
>pdb|2PKT|A Chain A, Crystal Structure Of The Human Clp-36 (Pdlim1) Bound To The
C-Terminal Peptide Of Human Alpha-Actinin-1
Length = 91
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 1040 RGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEA 1099
+G +GF + GG++F+ L + ++ AAL +L +GD I I+G NT NMTH EA
Sbjct: 10 QGPGPWGFRLVGGKDFEQ-PLAISRVTPGSKAAL-ANLCIGDVITAIDGENTSNMTHLEA 67
Query: 1100 IEIIRNGDSTVRLLIKR 1116
I+ + L + R
Sbjct: 68 QNRIKGCTDNLTLTVAR 84
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 832 FGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEI 869
+GFR+VGG + ++I + PG A L LC GD I
Sbjct: 15 WGFRLVGGKDFEQPLAISRVTPGSKAAL-ANLCIGDVI 51
Score = 29.6 bits (65), Expect = 9.8, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 634 NLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRS 677
NL GD++ I+ N NM H E +K C NL + V RS
Sbjct: 44 NLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNL--TLTVARS 85
>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank
Pdz Complex
Length = 132
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 1040 RGTRGFGFSIRGGR------EFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEINGI 1089
+ + GFGF +RG + EF AL L+ + G A L++GD ++E+NG
Sbjct: 36 KDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQ 95
Query: 1090 NTKNMTHAEAIEIIRNGDSTV 1110
N + H + + +IR G +T+
Sbjct: 96 NVVKVGHRQVVNMIRQGGNTL 116
Score = 34.3 bits (77), Expect = 0.47, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 18/86 (20%)
Query: 923 VTITRRENEGFGFVIISSLNKAGSTIGR---------------IIEDSPADRSGELHLGD 967
V + ++++EGFGFV+ + KA + I + E A R+G L +GD
Sbjct: 31 VLLQKKDSEGFGFVLRGA--KAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGD 87
Query: 968 HILAVNHVDIMSLHHGEIVNLIKDSG 993
++ VN +++ + H ++VN+I+ G
Sbjct: 88 FLIEVNGQNVVKVGHRQVVNMIRQGG 113
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 1038 LSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
L +G +G+GF++ + ++ + PAA G L+ D ++E+NG N + + HA
Sbjct: 10 LRKGPQGYGFNLHSDK--SRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHA 66
Query: 1098 EAIEIIRNGDSTVRLLI 1114
E + I+ + RLL+
Sbjct: 67 EVVASIKAREDEARLLV 83
Score = 38.5 bits (88), Expect = 0.023, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 927 RRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIV 986
R+ +G+GF + S ++ G I + SPA RSG L D ++ VN ++ L H E+V
Sbjct: 11 RKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVV 69
Query: 987 NLIK 990
IK
Sbjct: 70 ASIK 73
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 605 KGAMGFGFTI-ADSSH-GQKVKKILDRQRC--KNLAEGDILIEINNLNVRNMCHGEVVQV 660
KG G+GF + +D S GQ ++ + L D LIE+N NV + H EVV
Sbjct: 12 KGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVAS 71
Query: 661 LKDCQRNLEANIIV 674
+K R EA ++V
Sbjct: 72 IK--AREDEARLLV 83
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 1038 LSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
+ +G G+GF++ + F+ + + PA G L+ D IVE+NG+ + H
Sbjct: 15 MKKGPSGYGFNLHSDK--SKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHG 71
Query: 1098 EAIEIIRNGDSTVRLLI 1114
+ + IR G +LL+
Sbjct: 72 DVVSAIRAGGDETKLLV 88
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 932 GFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKD 991
G+GF + S +K G I + DSPA+ SG L D I+ VN V + HG++V+ I+
Sbjct: 21 GYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRA 79
Query: 992 SGYCVTLTI 1000
G L +
Sbjct: 80 GGDETKLLV 88
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
Q + + +G+ G+GF +R G E + +++ E G A LK D +V +NG +
Sbjct: 5 QPRVVVIKKGSNGYGFYLRAGPEQKGQ---IIKDIEPGSPAEAAGLKNNDLVVAVNGKSV 61
Query: 1092 KNMTHAEAIEIIRNGDSTVRLLI 1114
+ + H +E+IR G LL+
Sbjct: 62 EALDHDGVVEMIRKGGDQTTLLV 84
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 923 VTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHH 982
V + ++ + G+GF + + + G I I SPA+ +G L D ++AVN + +L H
Sbjct: 8 VVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDH 66
Query: 983 GEIVNLIKDSGYCVTLTI 1000
+V +I+ G TL +
Sbjct: 67 DGVVEMIRKGGDQTTLLV 84
>pdb|2RCZ|A Chain A, Structure Of The Second Pdz Domain Of Zo-1
pdb|2RCZ|B Chain B, Structure Of The Second Pdz Domain Of Zo-1
Length = 81
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 39/57 (68%)
Query: 1060 LFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+FV +I+++ AA DG+++ GD +++ING T+NM+ +A +I ++++++R
Sbjct: 23 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQR 79
>pdb|3CYY|A Chain A, The Crystal Structure Of Zo-1 Pdz2 In Complex With The Cx43
Peptide
pdb|3CYY|B Chain B, The Crystal Structure Of Zo-1 Pdz2 In Complex With The Cx43
Peptide
Length = 92
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 39/57 (68%)
Query: 1060 LFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+FV +I+++ AA DG+++ GD +++ING T+NM+ +A +I ++++++R
Sbjct: 25 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQR 81
>pdb|2JWE|A Chain A, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
pdb|2JWE|B Chain B, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
Length = 88
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 39/57 (68%)
Query: 1060 LFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+FV +I+++ AA DG+++ GD +++ING T+NM+ +A +I ++++++R
Sbjct: 22 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQR 78
>pdb|2Q3G|A Chain A, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-
Terminal Extension From Human Beta-Tropomyosin
pdb|2Q3G|B Chain B, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-
Terminal Extension From Human Beta-Tropomyosin
Length = 89
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 1041 GTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAI 1100
G +GF ++GG++F N+ L + ++ G AA G + VGD ++ I+G N ++TH EA
Sbjct: 11 GPAPWGFRLQGGKDF-NVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQ 68
Query: 1101 EIIRNGDSTVRLLIKRG 1117
IR + L + R
Sbjct: 69 NKIRACGERLSLGLSRA 85
Score = 30.4 bits (67), Expect = 5.7, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 832 FGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXXXXXXHHHVVELMGK 891
+GFR+ GG + +SI + PGG A G + GD + H +E K
Sbjct: 15 WGFRLQGGKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTH---IEAQNK 70
Query: 892 ASVYG-RVTLGIRRKV 906
G R++LG+ R +
Sbjct: 71 IRACGERLSLGLSRAI 86
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 1034 HAIELSR--GTRGFGFSIRGGRE----FQNMALFVLQIAENGPAALDGHLKVGDEIVEIN 1087
+++EL R T G SI G R+ + ++V + AALDG ++ D+I+ ++
Sbjct: 14 YSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVD 73
Query: 1088 GINTKNMTHAEAIEIIRN 1105
+N + M ++ +E++RN
Sbjct: 74 DVNVQGMAQSDVVEVLRN 91
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 425 FTLNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGD 484
F+L EL E+ SSL S+ G+ G+ + + +KS++P AAL+G ++ D
Sbjct: 11 FSLYSVELFREKDTSSLGISISGMRDQSTTGEATG---IYVKSLIPGSAAALDGRIEPND 67
Query: 485 VLVYVNDKCVLGYTHHDMVSVFQ 507
++ V+D V G D+V V +
Sbjct: 68 KILRVDDVNVQGMAQSDVVEVLR 90
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 833 GFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXXXXXXXHHHVVELMGKA 892
G R T E + + + ++PG AA LDGR+ D+I VVE++ A
Sbjct: 33 GMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNA 92
>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1 (150-
270)
Length = 128
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 1038 LSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
+ +G G+GF++ + F+ + + PA G L+ D IVE+NG+ + H
Sbjct: 15 MKKGPSGYGFNLHSDK--SKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHG 71
Query: 1098 EAIEIIRNGDSTVRLLI 1114
+ + IR G +LL+
Sbjct: 72 DVVSAIRAGGDETKLLV 88
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 932 GFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKD 991
G+GF + S +K G I + DSPA+ SG L D I+ VN V + HG++V+ I+
Sbjct: 21 GYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRA 79
Query: 992 SG 993
G
Sbjct: 80 GG 81
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 448 LGFTIVG----GDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMV 503
LG IVG + + +KSV+P A GH+Q D +V V+ + G+ +HD+V
Sbjct: 29 LGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVV 88
Query: 504 SVFQSISPGETVQLEVCR 521
V + + G+ V L + R
Sbjct: 89 EVLR--NAGQVVHLTLVR 104
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 33/58 (56%)
Query: 1059 ALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
++V + A +GH++V D+IV ++G+N + + + +E++RN V L + R
Sbjct: 47 GIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVR 104
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 823 ITLLRQE-NGFGFRIVG-----GTEEGSQVSIGHIVPGGAADLDGRLCTGDEIXXXXXXX 876
+ L+R++ G RIVG T E S + + ++PG AA +G + D+I
Sbjct: 19 VELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVN 78
Query: 877 XXXXXHHHVVELMGKASVYGRVTLGIRRK 905
+H VVE++ A +TL +RRK
Sbjct: 79 IQGFANHDVVEVLRNAGQVVHLTL-VRRK 106
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27)
Fused To The C-Terminal Residues (Eseskv) Of Girk3
Length = 107
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 1027 GEHDEQYHAIELSRGTRGFGFSIRG----GREFQ--NMALFV----LQIAENGPAALDGH 1076
G H + + + G+GF++RG G + + N L+ + G AA
Sbjct: 1 GSHGGSPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG 60
Query: 1077 LKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLI 1114
++ GD I+E+NG+N + TH + +++IR G+ + L +
Sbjct: 61 VRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVS------------IGHIVPGGAADLDGRLCTGDEI 869
V+ +++ E+G+GF + G EG Q+ + ++PGGAAD G + GD I
Sbjct: 9 VVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRI 67
Query: 870 XXXXXXXXXXXXHHHVVELM 889
H VV+L+
Sbjct: 68 LEVNGVNVEGATHKQVVDLI 87
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 918 GYPYDVTITRRENEGFGFVIISSLNKAGST-------------IGRIIEDSPADRSGELH 964
G P V I + E+ G+GF + +++ G + ++ ADR+G +
Sbjct: 5 GSPRVVRIVKSES-GYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VR 62
Query: 965 LGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
GD IL VN V++ H ++V+LI+ + LT+
Sbjct: 63 KGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 9/79 (11%)
Query: 1045 FGFSIRGG-----REFQ--NMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
GFSI GG F+ + +FV ++ GPA+ L+ GD+I++ NG + N+ H
Sbjct: 15 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHG 72
Query: 1098 EAIEIIRNGDSTVRLLIKR 1116
+A+ +++ +TV L+I R
Sbjct: 73 QAVSLLKTFQNTVELIIVR 91
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 632 CKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANII 673
K L GD +I+ N + N+ HG+ V +LK Q +E I+
Sbjct: 49 SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 90
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 1029 HDEQYHAIELSRGTRGFGFSIRGG---REFQNMALFVLQIAENGPAALDGHLKVGDEIVE 1085
H E + GFG ++GG E + V I + PA G L+VGD ++
Sbjct: 13 HTETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLS 72
Query: 1086 INGINTKNMTHAEAIEIIRNG 1106
INGI T++ T EA +++R+
Sbjct: 73 INGIATEDGTMEEANQLLRDA 93
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 954 DSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSG 993
DSPA+R G L +GD +L++N + E L++D+
Sbjct: 55 DSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAA 94
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27)
Fused To The Gly-Gly Linker Followed By C-Terminal
(Eseskv) Of Girk3
Length = 109
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 1027 GEHDEQYHAIELSRGTRGFGFSIRG----GREFQ--NMALFV----LQIAENGPAALDGH 1076
G H + + + G+GF++RG G + + N L+ + G AA
Sbjct: 1 GSHGGSPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG 60
Query: 1077 LKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLI 1114
++ GD I+E+NG+N + TH + +++IR G+ + L +
Sbjct: 61 VRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVS------------IGHIVPGGAADLDGRLCTGDEI 869
V+ +++ E+G+GF + G EG Q+ + ++PGGAAD G + GD I
Sbjct: 9 VVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRI 67
Query: 870 XXXXXXXXXXXXHHHVVELM 889
H VV+L+
Sbjct: 68 LEVNGVNVEGATHKQVVDLI 87
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 918 GYPYDVTITRRENEGFGFVIISSLNKAGST-------------IGRIIEDSPADRSGELH 964
G P V I + E+ G+GF + +++ G + ++ ADR+G +
Sbjct: 5 GSPRVVRIVKSES-GYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VR 62
Query: 965 LGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
GD IL VN V++ H ++V+LI+ + LT+
Sbjct: 63 KGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1
Length = 98
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 1038 LSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
+ +G G+GF++ + F+ + + PA G L+ D IVE+NG+ + H
Sbjct: 15 MKKGPSGYGFNLHSDK--SKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHG 71
Query: 1098 EAIEIIRNGDSTVRLLI 1114
+ + IR G +LL+
Sbjct: 72 DVVSAIRAGGDETKLLV 88
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 932 GFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKD 991
G+GF + S +K G I + DSPA+ SG L D I+ VN V + HG++V+ I+
Sbjct: 21 GYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRA 79
Query: 992 SG 993
G
Sbjct: 80 GG 81
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 9/79 (11%)
Query: 1045 FGFSIRGG-----REFQ--NMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
GFSI GG F+ + +FV ++ GPA+ L+ GD+I++ NG + N+ H
Sbjct: 23 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHG 80
Query: 1098 EAIEIIRNGDSTVRLLIKR 1116
+A+ +++ +TV L+I R
Sbjct: 81 QAVSLLKTFQNTVELIIVR 99
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 632 CKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANII 673
K L GD +I+ N + N+ HG+ V +LK Q +E I+
Sbjct: 57 SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 98
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27)
In Complex With The Eseskv Peptide Corresponding To The
C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27)
In Complex With The Eseskv Peptide Corresponding To The
C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27)
In Complex With The Eseskv Peptide Corresponding To The
C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27)
In Complex With The Eseskv Peptide Corresponding To The
C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27)
In Complex With The Eseskv Peptide Corresponding To The
C-Terminal Tail Of Girk3
Length = 101
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 1027 GEHDEQYHAIELSRGTRGFGFSIRG----GREFQ--NMALFV----LQIAENGPAALDGH 1076
G H + + + G+GF++RG G + + N L+ + G AA
Sbjct: 1 GSHGGSPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG 60
Query: 1077 LKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLI 1114
++ GD I+E+NG+N + TH + +++IR G+ + L +
Sbjct: 61 VRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVS------------IGHIVPGGAADLDGRLCTGDEI 869
V+ +++ E+G+GF + G EG Q+ + ++PGGAAD G + GD I
Sbjct: 9 VVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRI 67
Query: 870 XXXXXXXXXXXXHHHVVELM 889
H VV+L+
Sbjct: 68 LEVNGVNVEGATHKQVVDLI 87
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 918 GYPYDVTITRRENEGFGFVIISSLNKAGST-------------IGRIIEDSPADRSGELH 964
G P V I + E+ G+GF + +++ G + ++ ADR+G +
Sbjct: 5 GSPRVVRIVKSES-GYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VR 62
Query: 965 LGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
GD IL VN V++ H ++V+LI+ + LT+
Sbjct: 63 KGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human
Nherf-1 (Slc9a3r1)
Length = 92
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 1038 LSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
+ +G G+GF++ + F+ + + PA G L+ D IVE+NG+ + H
Sbjct: 10 MKKGPSGYGFNLHSDK--SKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHG 66
Query: 1098 EAIEIIRNGDSTVRLLI 1114
+ + IR G +LL+
Sbjct: 67 DVVSAIRAGGDETKLLV 83
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 932 GFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKD 991
G+GF + S +K G I + DSPA+ SG L D I+ VN V + HG++V+ I+
Sbjct: 16 GYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRA 74
Query: 992 SG 993
G
Sbjct: 75 GG 76
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
WE T VYF+DHN+ T++W DPRL
Sbjct: 13 WEMRLTNTARVYFVDHNTKTTTWDDPRL 40
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 342 LPYGWE-RIDDPAYGTYYIDHVNKQTQYENPVLQAKHRDQGAGPSEMDDNEHKV---KDS 397
LP GWE R+ + A Y++DH K T +++P L + DQ P D KV +
Sbjct: 9 LPSGWEMRLTNTA-RVYFVDHNTKTTTWDDPRLPSS-LDQNV-PQYKRDFRRKVIYFRSQ 65
Query: 398 PGKRIAP 404
P RI P
Sbjct: 66 PALRILP 72
>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 102
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 1027 GEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEI 1086
G + + +G+ G+GF +R G E + +++ E G A LK D +V +
Sbjct: 1 GSSGSSGRVVVIKKGSNGYGFYLRAGPEQKGQ---IIKDIEPGSPAEAAGLKNNDLVVAV 57
Query: 1087 NGINTKNMTHAEAIEIIRNGDSTVRLLI 1114
NG + + + H +E+IR G LL+
Sbjct: 58 NGKSVEALDHDGVVEMIRKGGDQTTLLV 85
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 923 VTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHH 982
V + ++ + G+GF + + + G I I SPA+ +G L D ++AVN + +L H
Sbjct: 9 VVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDH 67
Query: 983 GEIVNLIKDSGYCVTLTI 1000
+V +I+ G TL +
Sbjct: 68 DGVVEMIRKGGDQTTLLV 85
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
Length = 89
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 1034 HAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKN 1093
+ + +G+ G+GF +R G E + +++ E G A LK D +V +NG + +
Sbjct: 4 RVVVIKKGSNGYGFYLRAGPEQKGQ---IIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEA 60
Query: 1094 MTHAEAIEIIRNGDSTVRLLI 1114
+ H +E+IR G LL+
Sbjct: 61 LDHDGVVEMIRKGGDQTTLLV 81
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 923 VTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHH 982
V + ++ + G+GF + + + G I I SPA+ +G L D ++AVN + +L H
Sbjct: 5 VVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDH 63
Query: 983 GEIVNLIKDSGYCVTLTI 1000
+V +I+ G TL +
Sbjct: 64 DGVVEMIRKGGDQTTLLV 81
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase A
Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase A
Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase A
Type Ii Alpha And Pdzk1
Length = 87
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 1038 LSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
L++G G+GF + R F+ ++ + GPA L G L+ D I+E+NG+N + +
Sbjct: 9 LAKGENGYGFHLNAIRGLPGS--FIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYE 65
Query: 1098 EAIEIIRNGDSTVRLLI 1114
+ ++ I++ V LL+
Sbjct: 66 KVVDRIQSSGKNVTLLV 82
Score = 34.7 bits (78), Expect = 0.35, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 925 ITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGE 984
+ + EN G+GF + + GS I + + PAD +G L D I+ VN V+++ + +
Sbjct: 9 LAKGEN-GYGFHLNAIRGLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEK 66
Query: 985 IVNLIKDSGYCVTLTI 1000
+V+ I+ SG VTL +
Sbjct: 67 VVDRIQSSGKNVTLLV 82
>pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|B Chain B, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|C Chain C, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|D Chain D, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
Length = 207
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 155 DGELNGVDYTFLSIEEFKQLEKSGCLLESGLYEGNHYGTP 194
+GE++GVDY F + + F+ L K +E Y GN+YGTP
Sbjct: 47 EGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYGTP 86
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 920 PYDVTITRRENEGFGFVIIS-SLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIM 978
P VT+ + GF I ++ G I ++I DS A R+G L GD +LAVN VD
Sbjct: 16 PRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQ 74
Query: 979 SLHHGEIVNLIKDS 992
+ H + V ++K +
Sbjct: 75 DIEHSKAVEILKTA 88
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 1045 FGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIR 1104
GF+IRGG+ Q + +F+ ++ + A G L+ GD+++ +N ++ +++ H++A+EI++
Sbjct: 29 LGFNIRGGKASQ-LGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILK 86
Query: 1105 NG 1106
Sbjct: 87 TA 88
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding
Protein 2
Length = 95
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 38/83 (45%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+ L + G I+ R +F+L + E G AA DG L D ++ ING + K T
Sbjct: 7 VALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGT 66
Query: 1096 HAEAIEIIRNGDSTVRLLIKRGG 1118
A +II+ V L I R G
Sbjct: 67 PELAAQIIQASGERVNLTIARPG 89
>pdb|1V5Q|A Chain A, Solution Structure Of The Pdz Domain From Mouse Glutamate
Receptor Interacting Protein 1a-L (Grip1) Homolog
Length = 122
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 1029 HDEQYHAIELSRGTRGFGFSIRG---GREFQNMALFVLQIAENGPAALDGHLKVGDEIVE 1085
H E + + GFG ++G E + + I + PA G L++GD ++
Sbjct: 13 HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 72
Query: 1086 INGINTKNMTHAEAIEIIRNGDSTVRLLIK 1115
INGI T++ T EA +++R+ T ++ ++
Sbjct: 73 INGIPTEDSTFEEANQLLRDSSITSKVTLE 102
Score = 35.4 bits (80), Expect = 0.20, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 922 DVTITRRENEGFGF-----VIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVD 976
+V +T GFG V + + I I DSPA+R G L +GD ++A+N +
Sbjct: 18 EVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIP 77
Query: 977 IMSLHHGEIVNLIKDSGYCVTLTI 1000
E L++DS +T+
Sbjct: 78 TEDSTFEEANQLLRDSSITSKVTL 101
>pdb|3E17|A Chain A, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
pdb|3E17|B Chain B, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
Length = 88
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 1060 LFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+FV ++ G A DG+L GD I++ING T+NM+ +A ++I ++L++ R
Sbjct: 23 IFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLR 79
>pdb|2OSG|A Chain A, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
pdb|2OSG|B Chain B, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
Length = 83
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 1060 LFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+FV ++ G A DG+L GD I++ING T+NM+ +A ++I ++L++ R
Sbjct: 23 IFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLR 79
>pdb|1P1E|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 101
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 1029 HDEQYHAIELSRGTRGFGFSIRG---GREFQNMALFVLQIAENGPAALDGHLKVGDEIVE 1085
H E + + GFG ++G E + + I + PA G L++GD ++
Sbjct: 4 HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 63
Query: 1086 INGINTKNMTHAEAIEIIRNGDSTVRLLIK 1115
INGI T++ T EA +++R+ T ++ ++
Sbjct: 64 INGIPTEDSTFEEANQLLRDSSITSKVTLE 93
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 922 DVTITRRENEGFGF-----VIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVD 976
+V +T GFG V + + I I DSPA+R G L +GD ++A+N +
Sbjct: 9 EVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIP 68
Query: 977 IMSLHHGEIVNLIKDSGYCVTLTI 1000
E L++DS +T+
Sbjct: 69 TEDSTFEEANQLLRDSSITSKVTL 92
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 1041 GTRGFGFSIRGGREFQ---NMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
G+ G G S++G + + ++ +F+ I G A DG L++ D+++ +NG ++
Sbjct: 35 GSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNH 94
Query: 1098 EAIEIIR 1104
EA+E +R
Sbjct: 95 EAMETLR 101
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 447 GLGFTIVGGDDSKEEF----LQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
GLG ++ G + S+E + IKS++ G A +G L+ D L+ VN + +LG ++H+
Sbjct: 38 GLGVSLKG-NKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEA 96
Query: 503 VSVFQ 507
+ +
Sbjct: 97 METLR 101
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
Length = 91
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 1038 LSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
L++G G+GF + R F+ ++ + GPA L G L+ D I+E+NG+N + +
Sbjct: 9 LAKGENGYGFHLNAIRGLPGS--FIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYE 65
Query: 1098 EAIEIIRNGDSTVRLLI 1114
+ ++ I++ V LL+
Sbjct: 66 KVVDRIQSSGKNVTLLV 82
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
P + + EN G+GF + + GS I + + PAD +G L D I+ VN V+++
Sbjct: 4 PKLCRLAKGEN-GYGFHLNAIRGLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLD 61
Query: 980 LHHGEIVNLIKDSGYCVTLTI 1000
+ ++V+ I+ SG VTL +
Sbjct: 62 EPYEKVVDRIQSSGKNVTLLV 82
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 1038 LSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
L++G G+GF + R F+ ++ + GPA L G L+ D I+E+NG+N + +
Sbjct: 13 LAKGENGYGFHLNAIRGLPGS--FIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYE 69
Query: 1098 EAIEIIRNGDSTVRLLI 1114
+ ++ I++ V LL+
Sbjct: 70 KVVDRIQSSGKNVTLLV 86
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
P + + EN G+GF + + GS I + + PAD +G L D I+ VN V+++
Sbjct: 8 PKLCRLAKGEN-GYGFHLNAIRGLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLD 65
Query: 980 LHHGEIVNLIKDSGYCVTLTIGAPISG 1006
+ ++V+ I+ SG VTL + SG
Sbjct: 66 EPYEKVVDRIQSSGKNVTLLVCGKKSG 92
>pdb|1V5L|A Chain A, Solution Structure Of Pdz Domain Of Mouse Alpha-Actinin-2
Associated Lim Protein
Length = 103
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 1041 GTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAI 1100
G +GF + GG +F N L + +I G A +L GD I+ I+G T++MTHA+A
Sbjct: 13 GPAPWGFRLSGGIDF-NQPLVITRITP-GSKAAAANLCPGDVILAIDGFGTESMTHADAQ 70
Query: 1101 EIIRNGDSTVRLLIKRG 1117
+ I+ + L I R
Sbjct: 71 DRIKAASYQLCLKIDRA 87
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 1045 FGFSIRG-GREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEII 1103
G SI G E + +++ I + G A DG ++ GD ++++N +N +NM++ +A+ ++
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
Query: 1104 RN 1105
R+
Sbjct: 79 RD 80
Score = 35.8 bits (81), Expect = 0.16, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 448 LGFTIVGGDDSKEEF-LQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
LG +IVG + + + + I S++ G A +G ++ GD+L+ VND ++ D V V
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
Query: 507 QSI--SPGETV 515
+ I PG V
Sbjct: 79 RDIVHKPGPIV 89
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 638 GDILIEINNLNVRNMCHGEVVQVLKD 663
GD+L+++N++N NM + + V+VL+D
Sbjct: 55 GDMLLQVNDMNFENMSNDDAVRVLRD 80
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 817 YSDVMVITL-LRQENGFGFRIVGGTEEGSQ--VSIGHIVPGGAADLDGRLCTGD 867
+ +++ +TL + + N G IVG + E + IG I+ GGA DGR+ GD
Sbjct: 3 HMNIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGD 56
>pdb|1WMV|A Chain A, Solution Structure Of The Second Ww Domain Of Wwox
Length = 54
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 341 ELPYGWERIDDPAYGTYYIDHVNKQTQYENPVL 373
+LPYGWE+ D +++DH+NK+T Y +P L
Sbjct: 11 DLPYGWEQETDENGQVFFVDHINKRTTYLDPRL 43
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRLC 328
WE+ E G+V+F+DH + +++LDPRL
Sbjct: 16 WEQETDENGQVFFVDHINKRTTYLDPRLA 44
>pdb|2KPZ|A Chain A, Human Nedd4 3rd Ww Domain Complex With The Human T-Cell
Leukemia Virus 1 Gag-Pro Poliprotein Derived Peptide
Sdpqipppyvep
pdb|2KQ0|A Chain A, Human Nedd4 3rd Ww Domain Complex With Ebola Zaire Virus
Matrix Protein Vp40 Derived Peptide Ilptappeymea
Length = 49
Score = 38.9 bits (89), Expect = 0.019, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
WE + G +FIDHN+ T++W DPRL
Sbjct: 17 WEVRHAPNGRPFFIDHNTKTTTWEDPRL 44
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 342 LPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQ 374
LP GWE P ++IDH K T +E+P L+
Sbjct: 13 LPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLK 45
>pdb|2DB5|A Chain A, Solution Structure Of The First Pdz Domain Of Inad-Like
Protein
Length = 128
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 1032 QYHAIELSR-GTRGFGFSIRGGREFQNMA---LFVLQIAENGPAALDGHLKVGDEIVEIN 1087
Q I++ R T G GFS+ R QN+ +FV + A D LK D+I+ IN
Sbjct: 25 QIEYIDIERPSTGGLGFSVVALRS-QNLGKVDIFVKDVQPGSVADRDQRLKENDQILAIN 83
Query: 1088 GINT-KNMTHAEAIEIIRNGDSTVRLLIKR 1116
+N++H +AI +++ ++RL++ R
Sbjct: 84 HTPLDQNISHQQAIALLQQTTGSLRLIVAR 113
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 923 VTITRRENEGFGFVIIS----SLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDI- 977
+ I R G GF +++ +L K + + S ADR L D ILA+NH +
Sbjct: 29 IDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLD 88
Query: 978 MSLHHGEIVNLIKDSGYCVTLTIG 1001
++ H + + L++ + + L +
Sbjct: 89 QNISHQQAIALLQQTTGSLRLIVA 112
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And Adenovirus
Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And Adenovirus
Receptor
Length = 118
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 1045 FGFSIRGG---REFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIE 1101
G ++ GG RE+ ++ ++V+ + G + DG +K GD ++ ++G+ ++ +EA+
Sbjct: 38 LGMTVAGGASHREW-DLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVA 96
Query: 1102 IIRNGDSTVRL--LIKRGGSVV 1121
+++ S++ L L + GS+V
Sbjct: 97 LLKRTSSSIVLKALEVKEGSIV 118
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 448 LGFTIVGGDDSKEEFLQI--KSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
LG T+ GG +E L I SV P G + +G ++TGD+L+ V+ + + + V++
Sbjct: 38 LGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVAL 97
Query: 506 FQSISPGETVQ-LEVCRG 522
+ S ++ LEV G
Sbjct: 98 LKRTSSSIVLKALEVKEG 115
>pdb|1V62|A Chain A, Solution Structure Of The 3rd Pdz Domain Of Grip2
Length = 117
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 920 PYDVTITRRENEGFGFVIISS--LNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDI 977
P V I + G + ++ NK+ TI RI S DRSG LH GDHIL+ +D
Sbjct: 16 PLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILS---IDG 72
Query: 978 MSLHHGEIVNLIK 990
S+ H ++ K
Sbjct: 73 TSMEHCSLLEATK 85
>pdb|2V1W|A Chain A, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
pdb|2V1W|B Chain B, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
Length = 90
Score = 38.5 bits (88), Expect = 0.023, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1034 HAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKN 1093
H++ L RG +GF + GGR+F + L + ++ AAL L GD I ING +T+
Sbjct: 4 HSVTL-RGPSPWGFRLVGGRDF-SAPLTISRVHAGSKAAL-AALCPGDLIQAINGESTEL 60
Query: 1094 MTHAEAIEIIRNGDSTVRLLIKR 1116
MTH EA I+ + L + R
Sbjct: 61 MTHLEAQNRIKGCHDHLTLSVSR 83
Score = 30.0 bits (66), Expect = 7.8, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 826 LRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEI 869
LR + +GFR+VGG + + ++I + G A L LC GD I
Sbjct: 8 LRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAAL-AALCPGDLI 50
>pdb|3PS4|A Chain A, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|B Chain B, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|C Chain C, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|D Chain D, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
Length = 102
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 1036 IELSRGTRGFGFSIRGGREFQ------NMALFVLQIAENGPAALDGHLKVGDEIVEINGI 1089
I + R + +GF++R R + ++ V + E GPA G L GD I +NG
Sbjct: 9 ITIQRSGKKYGFTLRAIRVYMGDTDVYSVHHIVWHVEEGGPAQEAG-LCAGDLITHVNGE 67
Query: 1090 NTKNMTHAEAIEIIRNGDSTVRL 1112
M H E +E+I + V +
Sbjct: 68 PVHGMVHPEVVELILKSGNKVAV 90
>pdb|2EEG|A Chain A, Solution Structure Of Pdz Domain Of Pdz And Lim Domain
Protein
Length = 94
Score = 38.5 bits (88), Expect = 0.024, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 1034 HAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKN 1093
H++ L RG +GF + GGR+F + L + ++ AAL L GD I ING +T+
Sbjct: 10 HSVTL-RGPSPWGFRLVGGRDF-SAPLTISRVHAGSKAAL-AALCPGDLIQAINGESTEL 66
Query: 1094 MTHAEAIEIIRNGDSTVRLLIKRGGS 1119
MTH EA I+ + L + G S
Sbjct: 67 MTHLEAQNRIKGCHDHLTLSVSSGPS 92
Score = 29.6 bits (65), Expect = 9.9, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 826 LRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEI 869
LR + +GFR+VGG + + ++I + G A L LC GD I
Sbjct: 14 LRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAAL-AALCPGDLI 56
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 1057 NMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
++ +++ +I N AA DG ++ GD I++INGI +N A A+ + + LLI R
Sbjct: 47 DIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVAL-LTSEENKNFSLLIAR 105
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 447 GLGFTIVGGDDSKE-EFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
GLG I+GG + E + I V+P G +G L+ GD LV +N + ++G + + S+
Sbjct: 26 GLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSI 85
Query: 506 F 506
Sbjct: 86 I 86
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 822 VITLLRQENGFGFRIVGGTE--EGSQVSIGHIVPGGAADLDGRLCTGDEI 869
VIT+ + E G G +I+GG EG V I ++PGG DGRL GD++
Sbjct: 18 VITVTK-ETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQL 66
Score = 33.5 bits (75), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 1028 EHDEQYHAIELSRGTRGFGFSIRGG-REFQNMALFVLQIAENGPAALDGHLKVGDEIVEI 1086
+ D + I +++ T G G I GG + +++ ++ G DG LK GD++V I
Sbjct: 11 DRDPAFRVITVTKET-GLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSI 69
Query: 1087 NGINTKNMTHAEAIEII 1103
N + ++ EA II
Sbjct: 70 NKESMIGVSFEEAKSII 86
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With The
C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With The
C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With The
C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With The
C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With The
C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With The
C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 1045 FGFSIRGGREFQNMALFVLQIAENGPAALD-GHLKVGDEIVEINGINTKNMTHAEAIEII 1103
FGF+++GG + Q M + V ++A PA L L GD++V ING + TH + + I
Sbjct: 31 FGFNVKGGYD-QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFI 89
Query: 1104 R 1104
+
Sbjct: 90 K 90
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 808 RPTNIKSVEYSDVMVITLLRQENG-FGFRIVGGTEEGSQVSIGHIVPGGAADLD-GRLCT 865
+PT + + ++++I + ENG FGF + GG ++ V + + PG ADL RL
Sbjct: 6 KPTPNGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNE 65
Query: 866 GDEIXXXXXXXXXXXXHHHVVELMGKAS 893
GD++ H VV L KAS
Sbjct: 66 GDQVVLINGRDIAEHTHDQVV-LFIKAS 92
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 448 LGFTIVGGDDSKEEFLQIKSVVPNGPAAL-EGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
GF + GG D K + + V P PA L L GD +V +N + + +T HD V +F
Sbjct: 31 FGFNVKGGYDQKMPVI-VSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT-HDQVVLF 88
Query: 507 QSIS 510
S
Sbjct: 89 IKAS 92
>pdb|1WR7|A Chain A, Solution Structure Of The Third Ww Domain Of Nedd4-2
Length = 41
Score = 37.7 bits (86), Expect = 0.034, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
WE G +FIDHN+ T++W DPRL
Sbjct: 13 WEMRIAPNGRPFFIDHNTKTTTWEDPRL 40
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 342 LPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQ 374
LP GWE P ++IDH K T +E+P L+
Sbjct: 9 LPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRLK 41
>pdb|2DJY|A Chain A, Solution Structure Of Smurf2 Ww3 Domain-Smad7 Py Peptide
Complex
Length = 42
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
WE T G VYF+DHN+ T+ + DPRL
Sbjct: 12 WEIRNTATGRVYFVDHNNRTTQFTDPRL 39
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 342 LPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQA 375
LP GWE + Y++DH N+ TQ+ +P L A
Sbjct: 8 LPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLSA 41
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 1045 FGFSIRGGREFQNMALFVLQIAENGPAALD-GHLKVGDEIVEINGINTKNMTHAEAIEII 1103
FGF+++GG + Q M + V ++A PA L L GD++V ING + TH + + I
Sbjct: 29 FGFNVKGGYD-QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFI 87
Query: 1104 R 1104
+
Sbjct: 88 K 88
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 42/99 (42%), Gaps = 21/99 (21%)
Query: 797 IPPDNLGLPRVRPTNIKSVEYSDVMVITLLRQENG-FGFRIVGGTEEGSQVSIGHIVPGG 855
IP DNL L R++P ENG FGF + GG ++ V + + PG
Sbjct: 11 IPHDNLVLIRMKP------------------DENGRFGFNVKGGYDQKMPVIVSRVAPGT 52
Query: 856 AADLD-GRLCTGDEIXXXXXXXXXXXXHHHVVELMGKAS 893
ADL RL GD++ H VV L KAS
Sbjct: 53 PADLCVPRLNEGDQVVLINGRDIAEHTHDQVV-LFIKAS 90
>pdb|1UFX|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Kiaa1526
Protein
Length = 103
Score = 37.7 bits (86), Expect = 0.037, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+ + + G +I GG + ++ I G A G LKVG I+E+NG+ +
Sbjct: 10 VRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKE 69
Query: 1096 HAEAIEII 1103
H EA II
Sbjct: 70 HREAARII 77
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 1045 FGFSIRG-GREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEII 1103
G SI G E + +++ I + G A DG ++ GD ++++N +N +NM++ +A+ ++
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
Query: 1104 RN 1105
R+
Sbjct: 79 RD 80
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 448 LGFTIVGGDDSKEEF-LQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
LG +IVG + + + + I S++ G A +G ++ GD+L+ VND ++ D V V
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
Query: 507 QSI--SPGETV 515
+ I PG V
Sbjct: 79 RDIVHKPGPIV 89
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 638 GDILIEINNLNVRNMCHGEVVQVLKDC 664
GD+L+++N++N NM + + V+VL+D
Sbjct: 55 GDMLLQVNDMNFENMSNDDAVRVLRDI 81
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid Beta
A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 918 GYPYDVTITRRENEGFGFVIISSLNKAGST-----IGRIIEDSPADRSGELHLGDHILAV 972
G DV I +++ E G VI+ S GS I ++ PA++SG+L++GD I+++
Sbjct: 4 GSSGDVFIEKQKGEILGVVIVES--GWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSI 61
Query: 973 NHVDIMSLHHGEIVNLIK 990
N ++ L ++IK
Sbjct: 62 NGTSLVGLPLSTCQSIIK 79
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled 2
(Homologous To Drosophila Dsh)
Length = 100
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 1045 FGFSIRG-GREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEII 1103
G SI G E + +++ I + G A DG ++ GD ++++N +N +NM++ +A+ ++
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
Query: 1104 RN 1105
R+
Sbjct: 79 RD 80
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 448 LGFTIVGGDDSKEEF-LQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
LG +IVG + + + + I S++ G A +G ++ GD+L+ VND ++ D V V
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
Query: 507 QSI--SPGETV 515
+ I PG V
Sbjct: 79 RDIVHKPGPIV 89
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 638 GDILIEINNLNVRNMCHGEVVQVLKD 663
GD+L+++N++N NM + + V+VL+D
Sbjct: 55 GDMLLQVNDMNFENMSNDDAVRVLRD 80
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 819 DVMVITL-LRQENGFGFRIVGGTEEGSQ--VSIGHIVPGGAADLDGRLCTGDEI 869
+++ +TL + + N G IVG + E + IG I+ GGA DGR+ GD +
Sbjct: 5 NIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDML 58
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 37.4 bits (85), Expect = 0.045, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 922 DVTITRRENEGFGFVIISSLNKAGST-----IGRIIEDSPADRSGELHLGDHILAVNHVD 976
DV I +++ E G VI+ S GS I ++ PA++SG+L++GD I+++N
Sbjct: 4 DVFIEKQKGEILGVVIVES--GWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTS 61
Query: 977 IMSLHHGEIVNLIK 990
++ L ++IK
Sbjct: 62 LVGLPLSTCQSIIK 75
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 1060 LFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIR--NGDSTVRLLIKR 1116
+ + + GPA G L +GD+I+ ING + + + II+ S V+L I R
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVR 89
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 1045 FGFSIRG-GREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEII 1103
G SI G E + +++ I + G A DG ++ GD ++++N +N +NM++ +A+ ++
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
Query: 1104 RN 1105
R+
Sbjct: 79 RD 80
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 448 LGFTIVGGDDSKEEF-LQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
LG +IVG + + + + I S++ G A +G ++ GD+L+ VND ++ D V V
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
Query: 507 QSI--SPGETV 515
+ I PG V
Sbjct: 79 RDIVHKPGPIV 89
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 638 GDILIEINNLNVRNMCHGEVVQVLKDC 664
GD+L+++N++N NM + + V+VL+D
Sbjct: 55 GDMLLQVNDMNFENMSNDDAVRVLRDI 81
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 448 LGFTIVG-GDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
LG +IVG +D + + I S++ G A +G ++ GD+L+ VND ++ D V V
Sbjct: 12 LGISIVGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVL 71
Query: 507 QSI-SPGETVQLEVCRGY-PLP 526
+ I S + L V + + P P
Sbjct: 72 REIVSQTGPISLTVAKAWDPTP 93
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 1045 FGFSIRG-GREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEII 1103
G SI G + + +++ I + G A DG ++ GD ++++N +N +NM++ +A+ ++
Sbjct: 12 LGISIVGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVL 71
Query: 1104 R 1104
R
Sbjct: 72 R 72
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 1044 GFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEII 1103
GFG ++ G + +FV + E+G AA+ ++ GD I+++NG + H E +++I
Sbjct: 19 GFGLTVSG-----DNPVFVQSVKEDG-AAMRAGVQTGDRIIKVNGTLVTHSNHLEVVKLI 72
Query: 1104 RNG 1106
++G
Sbjct: 73 KSG 75
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 917 LGYPYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVD 976
+G I ++++ GFG + S N + + ED A R+G + GD I+ VN
Sbjct: 4 MGLVQRCVIIQKDDNGFGLTV-SGDNPV--FVQSVKEDGAAMRAG-VQTGDRIIKVNGTL 59
Query: 977 IMSLHHGEIVNLIKDSGYCVTLTIGAP 1003
+ +H E+V LIK Y G P
Sbjct: 60 VTHSNHLEVVKLIKSGSYVALTVQGRP 86
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 1045 FGFSIRG-GREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEII 1103
G SI G E + +++ I + G A DG ++ GD ++++N +N +NM++ +A+ ++
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
Query: 1104 RN 1105
R+
Sbjct: 79 RD 80
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 448 LGFTIVGGDDSKEEF-LQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
LG +IVG + + + + I S++ G A +G ++ GD+L+ VND ++ D V V
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
Query: 507 QSI--SPGETV 515
+ I PG V
Sbjct: 79 RDIVHKPGPIV 89
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 638 GDILIEINNLNVRNMCHGEVVQVLKDC 664
GD+L+++N++N NM + + V+VL+D
Sbjct: 55 GDMLLQVNDMNFENMSNDDAVRVLRDI 81
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine Phosphatase,
Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine Phosphatase,
Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 1045 FGFSIRGGREFQNMALFVLQIAENGPAALD-GHLKVGDEIVEINGINTKNMTHAEAIEII 1103
FGF+++GG + Q M + V ++A PA L L GD++V ING + TH + + I
Sbjct: 18 FGFNVKGGYD-QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFI 76
Query: 1104 R 1104
+
Sbjct: 77 K 77
Score = 33.5 bits (75), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 819 DVMVITLLRQENG-FGFRIVGGTEEGSQVSIGHIVPGGAADLD-GRLCTGDEIXXXXXXX 876
++++I + ENG FGF + GG ++ V + + PG ADL RL GD++
Sbjct: 4 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRD 63
Query: 877 XXXXXHHHVVELMGKAS 893
H VV L KAS
Sbjct: 64 IAEHTHDQVV-LFIKAS 79
>pdb|2LTZ|A Chain A, Smurf2 Ww3 Domain In Complex With A Smad7 Derived Peptide
Length = 37
Score = 37.0 bits (84), Expect = 0.056, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
WE T G VYF+DHN+ T+ + DPRL
Sbjct: 7 WEIRNTATGRVYFVDHNNRTTQFTDPRL 34
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 342 LPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQA 375
LP GWE + Y++DH N+ TQ+ +P L A
Sbjct: 3 LPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLSA 36
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 1045 FGFSIRG-GREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEII 1103
G SI G E + +++ I + G A DG ++ GD ++++N IN +N ++ +A+ ++
Sbjct: 13 LGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVL 72
Query: 1104 RN 1105
R+
Sbjct: 73 RD 74
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 448 LGFTIVGGDDSKEEF-LQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
LG +IVG + + + + I S+ G A +G ++ GD L+ VND ++ D V V
Sbjct: 13 LGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVL 72
Query: 507 QSI--SPGETV 515
+ I PG V
Sbjct: 73 RDIVHKPGPIV 83
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 37.0 bits (84), Expect = 0.065, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
I L + G +I+ ++ Q A+ V +I G A G + VGDE+ E+NGI ++
Sbjct: 8 IRLVKNREPLGATIK--KDEQTGAIIVARIXRGGAADRSGLIHVGDELREVNGIPVEDKR 65
Query: 1096 HAEAIEIIRNGDSTVRLLIKRGGSVVAP 1123
E I+I+ + I G P
Sbjct: 66 PEEIIQILAQSQGAITFKIIPGSKEETP 93
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%)
Query: 928 RENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVN 987
+ E G I + RI ADRSG +H+GD + VN + + EI+
Sbjct: 12 KNREPLGATIKKDEQTGAIIVARIXRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQ 71
Query: 988 LIKDSGYCVTLTI 1000
++ S +T I
Sbjct: 72 ILAQSQGAITFKI 84
>pdb|2LB1|A Chain A, Structure Of The Second Domain Of Human Smurf1 In Complex
With A Human Smad1 Derived Peptide
Length = 35
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
WE T G +YF+DHN+ T+ + DPRL
Sbjct: 8 WEVRSTVSGRIYFVDHNNRTTQFTDPRL 35
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 342 LPYGWERIDDPAYGTYYIDHVNKQTQYENPVL 373
LP GWE + Y++DH N+ TQ+ +P L
Sbjct: 4 LPPGWEVRSTVSGRIYFVDHNNRTTQFTDPRL 35
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 914 SMMLGYPYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVN 973
S M+ P + R+ + G + N G + ++EDSPA + G L GD IL VN
Sbjct: 2 SHMILRPSMKLVKFRKGDSVGLRLAGG-NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVN 59
Query: 974 HVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGD 1007
+VD ++ E V + D +TI A D
Sbjct: 60 NVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKD 93
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 1046 GFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAI 1100
G + GG ++ +FV + E+ PAA +G L+ GD+I+ +N ++ N+ EA+
Sbjct: 22 GLRLAGG---NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAV 72
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 635 LAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
L EGD ++ +NN++ N+ E V L D + E I+ Q+ +
Sbjct: 49 LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 92
>pdb|2LTX|A Chain A, Smurf1 Ww2 Domain In Complex With A Smad7 Derived Peptide
Length = 35
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
WE T G +YF+DHN+ T+ + DPRL
Sbjct: 7 WEVRSTVSGRIYFVDHNNRTTQFTDPRL 34
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 342 LPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQ 374
LP GWE + Y++DH N+ TQ+ +P L
Sbjct: 3 LPPGWEVRSTVSGRIYFVDHNNRTTQFTDPRLH 35
>pdb|2OP7|A Chain A, Ww4
Length = 39
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPR 326
WE YT +G YF+DHN+ T+++ DPR
Sbjct: 9 WEIRYTREGVRYFVDHNTRTTTFKDPR 35
>pdb|2CSS|A Chain A, Solution Structure Of The Pdz Domain Of Human Kiaa0340
Protein
Length = 121
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 1045 FGFSIRGGR--EFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEI 1102
G + GG+ + + F+ ++ + A + GHL+ GDE++E NG T+ E I
Sbjct: 39 LGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNI 98
Query: 1103 IRNGDS--TVRLLIKR 1116
I S V +++ R
Sbjct: 99 ILESKSEPQVEIIVSR 114
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 36.6 bits (83), Expect = 0.080, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 931 EGFGFVIISSLN---KAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVN 987
+GFGF++ + G + + PA ++G + GD ++AV + L H E V+
Sbjct: 14 QGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVS 72
Query: 988 LIKDSGYCVTLTIGAP 1003
I+ G CV+LT+ P
Sbjct: 73 RIQGQGSCVSLTVVDP 88
Score = 33.9 bits (76), Expect = 0.51, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 1036 IELSRGTRGFGFSIR-----GGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGIN 1090
+ L +G +GFGF +R GR Q F+ ++ PA G ++ GD +V + G +
Sbjct: 7 LHLEKGPQGFGFLLREEKGLDGRPGQ----FLWEVDPGLPAKKAG-MQAGDRLVAVAGES 61
Query: 1091 TKNMTHAEAIEIIRNGDSTVRLLI 1114
+ + H E + I+ S V L +
Sbjct: 62 VEGLGHEETVSRIQGQGSCVSLTV 85
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
Length = 194
Score = 36.6 bits (83), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 942 NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKD 991
N G + ++EDSPA + G L GD IL VN+VD ++ E V + D
Sbjct: 22 NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLD 70
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 1046 GFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAI 1100
G + GG ++ +FV + E+ PAA +G L+ GD+I+ +N ++ N+ EA+
Sbjct: 15 GLRLAGG---NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAV 65
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 635 LAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
L EGD ++ +NN++ N+ E V L D + E I+ Q+ +
Sbjct: 42 LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 85
>pdb|2LAX|A Chain A, Structure Of First Ww Domain Of Human Yap In Complex With
A Human Smad1 Doubly-Phosphorilated Derived Peptide
Length = 40
Score = 36.6 bits (83), Expect = 0.086, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPR 326
WE A T G+ YF++H T++W DPR
Sbjct: 12 WEMAKTSSGQRYFLNHIDQTTTWQDPR 38
>pdb|2YSG|A Chain A, Solution Structure Of The Ww Domain From The Human
Syntaxin- Binding Protein 4
Length = 40
Score = 36.6 bits (83), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
WE+AYT G YFI+H + T+SW+ P +
Sbjct: 12 WEEAYTADGIKYFINHVTQTTSWIHPVM 39
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 342 LPYGWERIDDPAYGTYYIDHVNKQTQYENPVL 373
LPYGWE Y+I+HV + T + +PV+
Sbjct: 8 LPYGWEEAYTADGIKYFINHVTQTTSWIHPVM 39
>pdb|2LAY|A Chain A, Structure Of The First Ww Domain Of Human Yap In Complex
With A Phosphorylated Human Smad1 Derived Peptide
pdb|2LTW|A Chain A, Yap Ww1 In Complex With A Smad7 Derived Peptide
Length = 36
Score = 36.6 bits (83), Expect = 0.092, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPR 326
WE A T G+ YF++H T++W DPR
Sbjct: 8 WEMAKTSSGQRYFLNHIDQTTTWQDPR 34
>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In Complex
With An Elks1b C-Terminal Peptide
Length = 114
Score = 36.6 bits (83), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 1045 FGFSIRGGR--EFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEI 1102
G + GG+ + + F+ ++ + A + GHL+ GDE++E NG T+ E I
Sbjct: 39 LGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNI 98
Query: 1103 IRNGDS--TVRLLIKR 1116
I S V +++ R
Sbjct: 99 ILESKSEPQVEIIVSR 114
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 942 NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKD 991
N G + ++EDSPA + G L GD IL VN+VD ++ E V + D
Sbjct: 21 NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLD 69
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 1046 GFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAI 1100
G + GG ++ +FV + E+ PAA +G L+ GD+I+ +N ++ N+ EA+
Sbjct: 14 GLRLAGG---NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAV 64
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 635 LAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
L EGD ++ +NN++ N+ E V L D + E I+ Q+ +
Sbjct: 41 LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 84
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 1036 IELSRGTRGFGFSIRGGREFQ------NMALFVLQIAENGPAALDGHLKVGDEIVEINGI 1089
I + R + +GF++R R + + V + + GPA+ G L+ GD I +NG
Sbjct: 8 IIIHRAGKKYGFTLRAIRVYMGDSDVYTVHHMVWHVEDGGPASEAG-LRQGDLITHVNGE 66
Query: 1090 NTKNMTHAEAIEIIRNGDSTVRL 1112
+ H E +E+I + V +
Sbjct: 67 PVHGLVHTEVVELILKSGNKVAI 89
>pdb|1WFG|A Chain A, Pdz Domain Of Human Rim2b
Length = 131
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 1045 FGFSIRGGR--EFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEI 1102
G + GG+ E + F+ ++ + A GHL+ GDE++E NG + T E I
Sbjct: 50 LGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNI 109
Query: 1103 IRNG--DSTVRLLIKRGG 1118
I + V L++ R G
Sbjct: 110 ILESKPEPQVELVVSRSG 127
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 448 LGFTIVGGDDSKEEFLQ--IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
LG +VGG ++ L I V A GHL+ GD ++ N + + G T ++ ++
Sbjct: 50 LGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNI 109
Query: 506 FQSISPGETVQLEVCRGYP 524
P V+L V R P
Sbjct: 110 ILESKPEPQVELVVSRSGP 128
>pdb|2YT7|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3
Length = 101
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 922 DVTITRRENEGFGFVIISSLNKA---GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIM 978
+V + +R EG G ++ S + + I ++ PA+RSG L +GD + A+N ++
Sbjct: 12 EVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLV 71
Query: 979 SL 980
L
Sbjct: 72 GL 73
>pdb|2LB2|A Chain A, Structure Of The Second Domain Of Human Nedd4l In Complex
With A Phosphorylated Ptpy Motif Derived From Human
Smad3
Length = 35
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 342 LPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQ 374
LP GWE D TYY++H N+ T + P++Q
Sbjct: 2 LPSGWEERKDAKGRTYYVNHNNRTTTWTRPIMQ 34
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDP 325
WE+ KG Y+++HN+ T++W P
Sbjct: 6 WEERKDAKGRTYYVNHNNRTTTWTRP 31
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 922 DVTITRRENEGFGFVIISSLNKAGST-----IGRIIEDSPADRSGELHLGDHILAVNHVD 976
DV I +++ E G VI+ S GS I ++ PA++SG+L++GD I+++N
Sbjct: 4 DVFIEKQKGEILGVVIVES--GWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTS 61
Query: 977 IMSLHHGEIVNLIK 990
++ L ++IK
Sbjct: 62 LVGLPLSTCQSIIK 75
>pdb|1E0M|A Chain A, Prototype Ww Domain
Length = 37
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
W++ T G+ Y+ +HN+ TS+W DPR+
Sbjct: 8 WDEYKTHNGKTYYYNHNTKTSTWTDPRM 35
>pdb|2LAJ|A Chain A, Third Ww Domain Of Human Nedd4l In Complex With Doubly
Phosphorylated Human Smad3 Derived Peptide
Length = 44
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
WE G +F DHN+ T++W DPRL
Sbjct: 12 WEMRIAPNGRPFFYDHNTKTTTWEDPRL 39
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With Its
Inhibitor
Length = 90
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 31/46 (67%)
Query: 1059 ALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIR 1104
+++ I + G A DG ++ GD ++++N +N +NM++ +A+ ++R
Sbjct: 30 GIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLR 75
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 448 LGFTIVG-GDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
LG +IVG +D + + I S++ G A +G ++ GD+L+ VND ++ D V V
Sbjct: 15 LGISIVGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVL 74
Query: 507 QSI 509
+ I
Sbjct: 75 REI 77
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule Associated
Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule Associated
Serine-Threonine Kinase 4
Length = 98
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 1043 RGFGFSIR------GGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTH 1096
+ +GF+IR G + + V + E PA G LK GD I ING + H
Sbjct: 12 KNYGFTIRAIRVYVGDSDIYTVHHIVWNVEEGSPACQAG-LKAGDLITHINGEPVHGLVH 70
Query: 1097 AEAIEIIRNGDSTVRL 1112
E IE++ + V +
Sbjct: 71 TEVIELLLKSGNKVSI 86
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
Length = 98
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 1045 FGFSIRG-GREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEII 1103
G SI G E + +++ I + G A DG ++ GD ++++N IN +N ++ +A+ ++
Sbjct: 15 LGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVL 74
Query: 1104 RN 1105
R+
Sbjct: 75 RD 76
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 448 LGFTIVGGDDSKEEF-LQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
LG +IVG + + + + I S+ G A +G ++ GD L+ VND ++ D V V
Sbjct: 15 LGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVL 74
Query: 507 QSI--SPGETV 515
+ I PG V
Sbjct: 75 RDIVHKPGPIV 85
>pdb|3L4H|A Chain A, Helical Box Domain And Second Ww Domain Of The Human E3
Ubiq Protein Ligase Hecw1
Length = 109
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
WE ++G+ +F+DHNS ++++DPR+
Sbjct: 77 WEIKTDQQGKSFFVDHNSRATTFIDPRI 104
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 1045 FGFSIRG-GREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEII 1103
G SI G E + +++ I + G A DG ++ GD ++++N IN +N ++ +A+ ++
Sbjct: 15 LGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVL 74
Query: 1104 RN 1105
R+
Sbjct: 75 RD 76
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 448 LGFTIVGGDDSKEEF-LQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
LG +IVG + + + + I S+ G A +G ++ GD L+ VND ++ D V V
Sbjct: 15 LGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVL 74
Query: 507 QSI--SPGETV 515
+ I PG V
Sbjct: 75 RDIVHKPGPIV 85
>pdb|1K5R|A Chain A, Yap65 Ww Domain S24-Amino-Ethylsulfanyl-Acetic Acid Mutant
Length = 41
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPR 326
WE A T G+ YF++H T++W DPR
Sbjct: 13 WEMAKTSXGQRYFLNHIDQTTTWQDPR 39
>pdb|2JO9|A Chain A, Mouse Itch 3rd Ww Domain Complex With The Epstein-Barr
Virus Latent Membrane Protein 2a Derived Peptide
Eeppppyed
pdb|1YIU|A Chain A, Itch E3 Ubiquitin Ligase Ww3 Domain
Length = 37
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPR 326
WEK G VYF++HN+ + W DPR
Sbjct: 10 WEKRTDSNGRVYFVNHNTRITQWEDPR 36
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 342 LPYGWERIDDPAYGTYYIDHVNKQTQYENP 371
LP GWE+ D Y+++H + TQ+E+P
Sbjct: 6 LPPGWEKRTDSNGRVYFVNHNTRITQWEDP 35
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 948 IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISG 1006
I RI++ A++SG LH GD +L +N ++I E+ +L+ D +T + P SG
Sbjct: 52 ISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVL-IPSSG 109
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 1059 ALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLI 1114
++ + +I + G A G L GDE++EINGI + E +++ + T+ ++
Sbjct: 49 SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVL 104
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 37/68 (54%)
Query: 923 VTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHH 982
V + +R+ G GF++ ++K I +I A++SG + GD ILAVN ++ L +
Sbjct: 5 VRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSY 64
Query: 983 GEIVNLIK 990
+ +++
Sbjct: 65 DSALEVLR 72
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 443 KSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
+ + GLGF +V SK + I ++ G A G +Q GD+++ VND+ ++ ++
Sbjct: 10 RKVGGLGF-LVKERVSKPPVI-ISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSA 67
Query: 503 VSVFQSISPGETVQLEVCRG 522
+ V + I+ ET + + RG
Sbjct: 68 LEVLRGIA-SETHVVLILRG 86
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 37/68 (54%)
Query: 923 VTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHH 982
V + +R+ G GF++ ++K I +I A++SG + GD ILAVN ++ L +
Sbjct: 7 VRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSY 66
Query: 983 GEIVNLIK 990
+ +++
Sbjct: 67 DSALEVLR 74
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 443 KSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
+ + GLGF +V SK + I ++ G A G +Q GD+++ VND+ ++ ++
Sbjct: 12 RKVGGLGF-LVKERVSKPPVI-ISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSA 69
Query: 503 VSVFQSISPGETVQLEVCRG 522
+ V + I+ ET + + RG
Sbjct: 70 LEVLRGIA-SETHVVLILRG 88
>pdb|2JMF|A Chain A, Solution Structure Of The Su(Dx) Ww4- Notch Py Peptide
Complex
Length = 53
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPR 326
WE YT GE +F+DHN+ +++ DPR
Sbjct: 23 WEIRYTAAGERFFVDHNTRRTTFEDPR 49
>pdb|2YSF|A Chain A, Solution Structure Of The Fourth Ww Domain From The Human
E3 Ubiquitin-Protein Ligase Itchy Homolog, Itch
Length = 40
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPR 326
WE +T G YF+DHN T++++DPR
Sbjct: 12 WEMRFTVDGIPYFVDHNRRTTTYIDPR 38
>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase
Length = 204
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 157 ELNGVDYTFLSIEEFKQLEKSGCLLESGLYEGNHYGTPK 195
E NGVDY F+ ++F++ K G LE Y N YGT K
Sbjct: 55 ETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYGTLK 93
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated Peptide
Length = 127
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 37/68 (54%)
Query: 923 VTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHH 982
V + +R+ G GF++ ++K I +I A++SG + GD ILAVN ++ L +
Sbjct: 12 VRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSY 71
Query: 983 GEIVNLIK 990
+ +++
Sbjct: 72 DSALEVLR 79
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 443 KSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
+ + GLGF +V SK + I ++ G A G +Q GD+++ VND+ ++ ++
Sbjct: 17 RKVGGLGF-LVKERVSKPPVI-ISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSA 74
Query: 503 VSVFQSISPGETVQLEVCRG 522
+ V + I+ ET + + RG
Sbjct: 75 LEVLRGIA-SETHVVLILRG 93
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 942 NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKD 991
N G + ++EDSPA + G L GD IL VN+VD ++ E V + D
Sbjct: 49 NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLD 97
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 1046 GFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAI 1100
G + GG ++ +FV + E+ PAA +G L+ GD+I+ +N ++ N+ EA+
Sbjct: 42 GLRLAGG---NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAV 92
Score = 31.6 bits (70), Expect = 3.0, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 633 KNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKK 683
+ L EGD ++ +NN++ N+ E V L D + E I+ Q+ + +++
Sbjct: 67 EGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRR 117
>pdb|2JOC|A Chain A, Mouse Itch 3rd Domain Phosphorylated In T30
Length = 37
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPR 326
WEK G VYF++HN+ W DPR
Sbjct: 10 WEKRTDSNGRVYFVNHNTRIXQWEDPR 36
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 35.0 bits (79), Expect = 0.25, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 942 NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKD 991
N G + ++EDSPA + G L GD IL VN+VD ++ E V + D
Sbjct: 24 NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLD 72
Score = 35.0 bits (79), Expect = 0.25, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 1046 GFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAI 1100
G + GG ++ +FV + E+ PAA +G L+ GD+I+ +N ++ N+ EA+
Sbjct: 17 GLRLAGG---NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAV 67
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 633 KNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKK 683
+ L EGD ++ +NN++ N+ E V L D + E I+ Q+ + +++
Sbjct: 42 EGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRR 92
>pdb|2KYK|A Chain A, The Sandwich Region Between Two Lmp2a Py Motif Regulates
The Interaction Between Aip4ww2domain And Py Motif
Length = 39
Score = 35.0 bits (79), Expect = 0.26, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 342 LPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQ 374
LP GWER D YY+DH + T ++ P L+
Sbjct: 7 LPPGWERRVDNMGRIYYVDHFTRTTTWQRPTLE 39
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
WE+ G +Y++DH + T++W P L
Sbjct: 11 WERRVDNMGRIYYVDHFTRTTTWQRPTL 38
>pdb|1K9Q|A Chain A, Yap65 Ww Domain Complexed To N-(N-Octyl)-Gpppy-Nh2
pdb|1K9R|A Chain A, Yap65 Ww Domain Complexed To Acetyl-Plppy
Length = 40
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPR 326
WE A T G+ YF++H T++W DPR
Sbjct: 13 WEMAKTSSGQRYFLNHIDQTTTWQDPR 39
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 35/69 (50%)
Query: 922 DVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
++ + + + E G V++ S + ++ PA RSG+L +GD I+++N ++ L
Sbjct: 194 ELQLEKHKGEILGVVVVESSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLP 253
Query: 982 HGEIVNLIK 990
+IK
Sbjct: 254 LATCQGIIK 262
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 1069 GPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIR 1104
GPAA G L +GD+I+ ING + + A II+
Sbjct: 227 GPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIK 262
>pdb|2EZ5|W Chain W, Solution Structure Of The Dnedd4 Ww3 Domain- Comm Lpsy
Peptide Complex
Length = 46
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 299 RWEKAYTEKGEVYFIDHNSSTSSWLDPR 326
RW G +FIDH S ++W+DPR
Sbjct: 14 RWSMQVAPNGRTFFIDHASRRTTWIDPR 41
>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function, Nmr,
20 Structures
Length = 130
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 1036 IELSRGTRGFGFSIRGGRE--FQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKN 1093
+ L + + G GFS+ GG+ + L + +I + + ++ GDEI+++ G +
Sbjct: 33 VTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQG 92
Query: 1094 MTHAEAIEIIRN-GDSTVRLLIKRGGSVVAPTDNAAG 1129
+T EA II+ D V ++I+R S+ + AAG
Sbjct: 93 LTRFEAWNIIKALPDGPVTIVIRR-KSLQSKETTAAG 128
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 813 KSVEYSDVMVITLLRQENGFGFRIVGGTEEGS-----QVSIGHIVPGGAADLDGRLCTGD 867
+S + V +TL + G GF + GG +GS ++I I G A++ + GD
Sbjct: 23 ESTAEATVCTVTLEKMSAGLGFSLEGG--KGSLHGDKPLTINRIFKGAASEQSETVQPGD 80
Query: 868 EIXXXXXXXXXXXXHHHVVELMGKASVYGRVTLGIRRKVMPPAETTS 914
EI ++ KA G VT+ IRRK + ETT+
Sbjct: 81 EILQLGGTAMQGLTRFEAWNII-KALPDGPVTIVIRRKSLQSKETTA 126
>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
pdb|3LNC|B Chain B, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
Length = 231
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 156 GELNGVDYTFLSIEEFKQLEKSGCLLESGLYEGNHYGTPK 195
GE G DY F+ EEF +L +G ++E GN YG P+
Sbjct: 69 GEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFYGVPR 108
>pdb|1JMQ|A Chain A, Yap65 (L30k Mutant) Ww Domain In Complex With Gtppppytvg
Peptide
Length = 46
Score = 34.7 bits (78), Expect = 0.35, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPR 326
WE A T G+ YF +H T++W DPR
Sbjct: 13 WEMAKTSSGQRYFKNHIDQTTTWQDPR 39
>pdb|1WR4|A Chain A, Solution Structure Of The Second Ww Domain Of Nedd4-2
Length = 36
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 342 LPYGWERIDDPAYGTYYIDHVNKQTQYENPVL 373
LP GWE D TYY++H N+ T + P++
Sbjct: 5 LPSGWEERKDAKGRTYYVNHNNRTTTWTRPIM 36
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDP 325
WE+ KG Y+++HN+ T++W P
Sbjct: 9 WEERKDAKGRTYYVNHNNRTTTWTRP 34
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 1045 FGFSIRGGREFQNMA--------LFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTH 1096
GF IR G + A +F+ ++ G A G L V DE++E+NGI T
Sbjct: 45 LGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTL 104
Query: 1097 AEAIEIIRNGDSTVRLLIK 1115
+ +++ S + + +K
Sbjct: 105 DQVTDMMVANSSNLIITVK 123
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human Microtubule
Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human Microtubule
Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 1043 RGFGFSIRGGREFQN-----MALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
+ +GFS+R R + V+ E+G A + L+ GD I ING + + H
Sbjct: 13 KKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHM 72
Query: 1098 EAIEIIRNGDSTVRL 1112
+ +E++ + + L
Sbjct: 73 DVVELLLKSGNKISL 87
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 437 IHSSLVK---SLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKC 493
IHSS K SLR + + GD + V +G A E L+ GD++ ++N +
Sbjct: 8 IHSSGKKYGFSLRAI--RVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGES 65
Query: 494 VLGYTHHDMVSVF 506
VLG H D+V +
Sbjct: 66 VLGLVHMDVVELL 78
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain Of
Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+++ +G+ G SI G + ++V ++ G A L+ GD+++E NGIN ++ T
Sbjct: 23 VKVQKGSEPLGISIVSG---EKGGIYVSKVT-VGSIAHQAGLEYGDQLLEFNGINLRSAT 78
Query: 1096 HAEAIEIIRNGDSTVRLL 1113
+A II T+ +L
Sbjct: 79 EQQARLIIGQQCDTITIL 96
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 1045 FGFSIRGGREFQNMA--------LFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTH 1096
GF IR G + A +F+ ++ G A G L V DE++E+NGI T
Sbjct: 45 LGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTL 104
Query: 1097 AEAIEIIRNGDSTVRLLIK 1115
+ +++ S + + +K
Sbjct: 105 DQVTDMMVANSSNLIITVK 123
>pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2AN9|B Chain B, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2ANB|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gmp
pdb|2ANC|A Chain A, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|B Chain B, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|C Chain C, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|D Chain D, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|E Chain E, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|F Chain F, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2F3R|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3R|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3T|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|C Chain C, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|D Chain D, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|E Chain E, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|F Chain F, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
Length = 207
Score = 33.5 bits (75), Expect = 0.72, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 156 GELNGVDYTFLSIEEFKQLEKSGCLLESGLYEGNHYGTPKPVKE 199
GE++G Y F++ +EFK++ LE GN+YGT + E
Sbjct: 47 GEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSREAIE 90
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 1041 GTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAI 1100
G+ GF G++ +++ I G A G L D ++E+NG N ++ +H E +
Sbjct: 19 GSYGFSLKTVQGKK----GVYMTDITPQGVAMRAGVL-ADDHLIEVNGENVEDASHEEVV 73
Query: 1101 EIIRNGDSTVRLLI 1114
E ++ S V L+
Sbjct: 74 EKVKKSGSRVMFLL 87
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 928 RENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVN 987
+E +GF + + K G + I A R+G L DH++ VN ++ H E+V
Sbjct: 16 KEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVL-ADDHLIEVNGENVEDASHEEVVE 74
Query: 988 LIKDSGYCVTLTI 1000
+K SG V +
Sbjct: 75 KVKKSGSRVMFLL 87
>pdb|1I5H|W Chain W, Solution Structure Of The Rnedd4 Wwiii Domain-Renac Bp2
Peptide Complex
Length = 50
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
WE+ G V+FI+HN + W DPR+
Sbjct: 16 WEERTHTDGRVFFINHNIKKTQWEDPRM 43
>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella Burnetii
Length = 205
Score = 33.1 bits (74), Expect = 0.84, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 156 GELNGVDYTFLSIEEFKQLEKSGCLLESGLYEGNHYGTPK 195
G+ GVDY F+ F+ K G LE HYGT K
Sbjct: 48 GDQEGVDYFFIDETRFQAXVKEGAFLEHATIYERHYGTEK 87
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 1045 FGFSIRGGREFQNMA--------LFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTH 1096
GF IR G + A +F+ ++ G A G L V DE++E+NGI T
Sbjct: 17 LGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTL 76
Query: 1097 AEAIEIIRNGDSTVRLLIK 1115
+ +++ S + + +K
Sbjct: 77 DQVTDMMVANSSNLIITVK 95
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 1045 FGFSIRGGREFQNMA--------LFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTH 1096
GF IR G + A +F+ ++ G A G L V DE++E+NGI T
Sbjct: 19 LGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTL 78
Query: 1097 AEAIEIIRNGDSTVRLLIK 1115
+ +++ S + + +K
Sbjct: 79 DQVTDMMVANSSNLIITVK 97
>pdb|2EJY|A Chain A, Solution Structure Of The P55 Pdz T85c Domain Complexed With
The Glycophorin C F127c Peptide
Length = 97
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 943 KAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
K T+ RI+ R G LH+GD IL +N ++ + ++ +K++ ++L +
Sbjct: 35 KQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKV 92
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 1062 VLQIAENGPAALDGHLKVGDEIVEINGINTKN 1093
V +I G G L VGDEI+EING N N
Sbjct: 40 VARILHGGMIHRQGSLHVGDEILEINGTNVTN 71
>pdb|2DMV|A Chain A, Solution Structure Of The Second Ww Domain Of Itchy
Homolog E3 Ubiquitin Protein Ligase (Itch)
Length = 43
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 342 LPYGWERIDDPAYGTYYIDHVNKQTQYENP 371
LP GWE+ D YY+DHV K+T ++ P
Sbjct: 8 LPPGWEQRVDQHGRVYYVDHVEKRTTWDRP 37
>pdb|1M5Z|A Chain A, The Pdz7 Of Glutamate Receptor Interacting Protein Binds To
Its Target Via A Novel Hydrophobic Surface Area
Length = 91
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 931 EGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIK 990
E FGF + L + G + I P D G L D +L VNHV +V LI
Sbjct: 19 EDFGFSVADGLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIA 77
Query: 991 DSGYCVTLTI 1000
+SG + L I
Sbjct: 78 ESGNKLDLVI 87
>pdb|1WR3|A Chain A, Solution Structure Of The First Ww Domain Of Nedd4-2
Length = 36
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 342 LPYGWERIDDPAYGTYYIDHVNKQTQYENPVL 373
LP GWE D TYY++H N+ TQ+ P L
Sbjct: 5 LPPGWEEKVDNLGRTYYVNHNNRSTQWHRPSL 36
>pdb|2EV8|A Chain A, Solution Structure Of The Erythroid P55 Pdz Domain
Length = 97
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 943 KAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
K T+ RI+ R G LH+GD IL +N ++ + ++ +K++ ++L +
Sbjct: 35 KQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKV 92
Score = 31.6 bits (70), Expect = 3.0, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 1062 VLQIAENGPAALDGHLKVGDEIVEINGINTKN 1093
V +I G G L VGDEI+EING N N
Sbjct: 40 VARILHGGMIHRQGSLHVGDEILEINGTNVTN 71
>pdb|2LTY|A Chain A, Nedd4l Ww2 Domain In Complex With A Smad7 Derived Peptide
Length = 34
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 342 LPYGWERIDDPAYGTYYIDHVNKQTQYENPV 372
LP GWE D TYY++H N+ T + P+
Sbjct: 3 LPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 33
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDP 325
WE+ KG Y+++HN+ T++W P
Sbjct: 7 WEERKDAKGRTYYVNHNNRTTTWTRP 32
>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
Length = 167
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 339 DDELPYGWERIDDPAYG-TYYIDHVNKQTQYENP 371
+++LP GWE+ + G YY +H+ +Q+E P
Sbjct: 8 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 41
>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain
pdb|1KWA|B Chain B, Human CaskLIN-2 Pdz Domain
Length = 88
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 1062 VLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIR 1104
V +I G G L VGDEI EINGI+ N T + +++R
Sbjct: 29 VARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLR 71
>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding
Domains By O- Phosphorylated Natural Product Derivatives
Length = 166
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 339 DDELPYGWERIDDPAYG-TYYIDHVNKQTQYENP 371
+++LP GWE+ + G YY +H+ +Q+E P
Sbjct: 7 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 40
>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|3NTP|A Chain A, Human Pin1 Complexed With Reduced Amide Inhibitor
Length = 167
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 339 DDELPYGWERIDDPAYG-TYYIDHVNKQTQYENP 371
+++LP GWE+ + G YY +H+ +Q+E P
Sbjct: 8 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 41
>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
pdb|3OOB|A Chain A, Structural And Functional Insights Of Directly Targeting
Pin1 By Epigallocatechin-3-Gallate
Length = 163
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 339 DDELPYGWERIDDPAYG-TYYIDHVNKQTQYENP 371
+++LP GWE+ + G YY +H+ +Q+E P
Sbjct: 4 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 37
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 1061 FVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAE-AIEIIRNGDSTVRLLIKR 1116
V Q+ N PA L G LK GD I +IN T + I ++R G STV+++++R
Sbjct: 285 LVSQVNPNSPAELAG-LKAGDIITQINDTKITQATQVKTTISLLRVG-STVKIIVER 339
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 1061 FVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAE-AIEIIRNGDSTVRLLIKR 1116
V Q+ N PA L G LK GD I +IN T + I ++R G STV+++++R
Sbjct: 285 LVSQVNPNSPAELAG-LKAGDIITQINDTKITQATQVKTTISLLRVG-STVKIIVER 339
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 1061 FVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAE-AIEIIRNGDSTVRLLIKR 1116
V Q+ N PA L G LK GD I +IN T + I ++R G STV+++++R
Sbjct: 285 LVSQVNPNSPAELAG-LKAGDIITQINDTKITQATQVKTTISLLRVG-STVKIIVER 339
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Query: 427 LNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVL 486
+P+++ G+ + +K L + GG DS + + +V G A G + GD +
Sbjct: 9 FSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEI 68
Query: 487 VYVNDKCVLGYTHHDMVSVFQSI--SPGETVQLEVCRGYPLPFD 528
+ +N K V YT + + Q G+ + L V P +D
Sbjct: 69 MAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYD 112
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 1054 EFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAE-AIEIIRNGDSTVRL 1112
+FQ V Q+ N PA L G LK GD I +IN T + I ++R G STV++
Sbjct: 280 DFQ--GALVSQVNPNSPAELAG-LKAGDIITQINDTKITQATQVKTTISLLRVG-STVKI 335
Query: 1113 LIKR 1116
+++R
Sbjct: 336 IVER 339
>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 339 DDELPYGWE-RIDDPAYGTYYIDHVNKQTQYENP 371
+++LP GWE R+ + YY +H+ +Q+E P
Sbjct: 4 EEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition
By Group Iv Ww Domains
Length = 167
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 339 DDELPYGWE-RIDDPAYGTYYIDHVNKQTQYENP 371
+++LP GWE R+ + YY +H+ +Q+E P
Sbjct: 8 EEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 41
>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens
pdb|1NMV|A Chain A, Solution Structure Of Human Pin1
Length = 163
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 339 DDELPYGWE-RIDDPAYGTYYIDHVNKQTQYENP 371
+++LP GWE R+ + YY +H+ +Q+E P
Sbjct: 4 EEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 339 DDELPYGWE-RIDDPAYGTYYIDHVNKQTQYENP 371
+++LP GWE R+ + YY +H+ +Q+E P
Sbjct: 4 EEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 339 DDELPYGWE-RIDDPAYGTYYIDHVNKQTQYENP 371
+++LP GWE R+ + YY +H+ +Q+E P
Sbjct: 4 EEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
pdb|1S96|B Chain B, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
Length = 219
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 156 GELNGVDYTFLSIEEFKQLEKSGCLLESGLYEGNHYGTPKPVKE 199
GE++G Y F++ +EFK+ LE GN+YGT + E
Sbjct: 59 GEVHGEHYFFVNHDEFKEXISRDAFLEHAEVFGNYYGTSREAIE 102
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 1059 ALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNG 1106
+FV + N PA+L G L+ GD++++ING N + +A ++++
Sbjct: 28 GIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQA 74
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 830 NGFGFRIVGGTE-EGSQVSIG----HIVPGGAADLDGRLCTGDEI 869
NG G RIVGG E G IG I+PGG+A+ G+L G ++
Sbjct: 30 NGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQV 74
>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 339 DDELPYGWE-RIDDPAYGTYYIDHVNKQTQYENP 371
+++LP GWE R+ + YY +H+ +Q+E P
Sbjct: 4 EEKLPPGWEKRMSRSSGRVYYANHITNASQWERP 37
>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 339 DDELPYGWE-RIDDPAYGTYYIDHVNKQTQYENP 371
+++LP GWE R+ + YY +H+ Q+E P
Sbjct: 4 EEKLPPGWEKRMSRSSGRVYYFNHITNAAQWERP 37
>pdb|2EDV|A Chain A, Solution Structure Of The Pdz Domain From Human Ferm And Pdz
Domain Containing 1
Length = 96
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 1034 HAIELSRGT--RGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
H +++ + T + +GF I +++ L V+ + G A G L GD+I+++N
Sbjct: 10 HTVKIDKDTLLQDYGFHIS-----ESLPLTVVAVTAGGSA--HGKLFPGDQILQMNNEPA 62
Query: 1092 KNMTHAEAIEIIRNGDSTVRLLIKR 1116
++++ A++I+R + ++ + + R
Sbjct: 63 EDLSWERAVDILREAEDSLSITVVR 87
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 1059 ALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNG 1106
+FV + N PA+L G L+ GD++++ING N + +A ++++
Sbjct: 28 GIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQA 74
>pdb|2F21|A Chain A, Human Pin1 Fip Mutant
Length = 162
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 339 DDELPYGWERIDDPAYGTYYIDHVNKQTQYENP 371
+++LP GWE+ YY +H+ +Q+E P
Sbjct: 4 EEKLPPGWEKRMSADGRVYYFNHITNASQWERP 36
>pdb|1EG3|A Chain A, Structure Of A Dystrophin Ww Domain Fragment In Complex
With A Beta-Dystroglycan Peptide
pdb|1EG4|A Chain A, Structure Of A Dystrophin Ww Domain Fragment In Complex
With A Beta-Dystroglycan Peptide
Length = 261
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRLCKFQKKLED 336
WE+A + Y+I+H + T+ W P++ + + L D
Sbjct: 16 WERAISPNKVPYYINHETQTTCWDHPKMTELYQSLAD 52
>pdb|2D8I|A Chain A, Solution Structure Of The Pdz Domain Of T-Cell Lymphoma
Invasion And Metastasis 1 Varian
Length = 114
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 1045 FGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEIN 1087
+GFS+ E L+V + E G A+ G LK GDEI+EIN
Sbjct: 31 YGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEIN 72
>pdb|3KZD|A Chain A, Crystal Structure Of Free T-Cell Lymphoma Invasion And Metas
Pdz Domain
pdb|3KZE|A Chain A, Crystal Structure Of T-Cell Lymphoma Invasion And Metastasis
Complex With Ssrkeyya Peptide
pdb|3KZE|B Chain B, Crystal Structure Of T-Cell Lymphoma Invasion And Metastasis
Complex With Ssrkeyya Peptide
pdb|3KZE|C Chain C, Crystal Structure Of T-Cell Lymphoma Invasion And Metastasis
Complex With Ssrkeyya Peptide
Length = 94
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 1045 FGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEIN 1087
+GFS+ E L+V + E G A+ G LK GDEI+EIN
Sbjct: 22 YGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEIN 63
>pdb|2LB0|A Chain A, Structure Of The First Ww Domain Of Human Smurf1 In
Complex With A Di- Phosphorylated Human Smad1 Derived
Peptide
Length = 36
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
+E+ T +G+VYF+ + S+W DPR+
Sbjct: 9 YEQRTTVQGQVYFLHTQTGVSTWHDPRI 36
>pdb|2E7K|A Chain A, Solution Structure Of The Pdz Domain From Human Maguk P55
Subfamily Member 2
Length = 91
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 1044 GFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEII 1103
G F + GG L + +I G A G L VGD I E+NG + A E++
Sbjct: 21 GVTFRVEGGE------LVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPRALQ-ELL 73
Query: 1104 RNGDSTVRLLIKRGGS 1119
RN +V L I G S
Sbjct: 74 RNASGSVILKILSGPS 89
>pdb|3SV7|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN COMPLEX
WITH Telaprevir
pdb|3SUE|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN COMPLEX
WITH MK- 5172
pdb|3SUE|B Chain B, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN COMPLEX
WITH MK- 5172
pdb|3SUE|C Chain C, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN COMPLEX
WITH MK- 5172
pdb|3SUE|D Chain D, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN COMPLEX
WITH MK- 5172
Length = 203
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 1096 HAEAIEIIRNGDSTVRLLIKR---------GGSVVAPTDNAAGIYSSDTSSNYWSRAI 1144
HA+ I + R GDS LL R GG ++ P +A GI+ + S+ ++A+
Sbjct: 131 HADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFKAAVSTRGVAKAV 188
>pdb|3SU4|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN COMPLEX
WITH Vaniprevir
pdb|3SU4|B Chain B, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN COMPLEX
WITH Vaniprevir
Length = 203
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 1096 HAEAIEIIRNGDSTVRLLIKR---------GGSVVAPTDNAAGIYSSDTSSNYWSRAI 1144
HA+ I + R GDS LL R GG ++ P +A GI+ + S+ ++A+
Sbjct: 131 HADVIPVRRRGDSRGSLLSPRPISYLKGSAGGPLLCPAGHAVGIFKAAVSTRGVAKAV 188
>pdb|3SU1|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT D168A IN COMPLEX
WITH Danoprevir
pdb|3SU5|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT D168A IN COMPLEX
WITH Vaniprevir
Length = 203
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 1096 HAEAIEIIRNGDSTVRLLIKR---------GGSVVAPTDNAAGIYSSDTSSNYWSRAIS 1145
HA+ I + R GDS LL R GG ++ P +A GI+ + S+ ++A++
Sbjct: 131 HADVIPVRRRGDSRGSLLSPRPISYLKGSAGGPLLCPAGHAVGIFRAAVSTRGVAKAVA 189
>pdb|2LAZ|A Chain A, Structure Of The First Ww Domain Of Human Smurf1 In
Complex With A Mono-Phosphorylated Human Smad1 Derived
Peptide
Length = 33
Score = 30.8 bits (68), Expect = 5.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
+E+ T +G+VYF+ + S+W DPR+
Sbjct: 6 YEQRTTVQGQVYFLHTQTGVSTWHDPRI 33
>pdb|3SV8|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT D168A IN COMPLEX
WITH Telaprevir
Length = 203
Score = 30.8 bits (68), Expect = 5.1, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 1096 HAEAIEIIRNGDSTVRLLIKR---------GGSVVAPTDNAAGIYSSDTSSNYWSRAIS 1145
HA+ I + R GDS LL R GG ++ P +A GI+ + S+ ++A++
Sbjct: 131 HADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVSTRGVAKAVA 189
>pdb|3SU0|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN COMPLEX
WITH Danoprevir
Length = 198
Score = 30.4 bits (67), Expect = 5.3, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 1096 HAEAIEIIRNGDSTVRLLIKR---------GGSVVAPTDNAAGIYSSDTSSNYWSRAI 1144
HA+ I + R GDS LL R GG ++ P +A GI+ + S+ ++A+
Sbjct: 128 HADVIPVRRRGDSRGSLLSPRPISYLKGSAGGPLLCPAGHAVGIFKAAVSTRGVAKAV 185
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 157 ELNGVDYTFLSIEEFKQLEKSGCLLESGLYEGNHYGT 193
E +G +Y F+S EE + + LE G Y+GN +GT
Sbjct: 62 EEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGT 98
>pdb|2E45|A Chain A, Solution Structure Of Fe65 Ww Domain
Length = 55
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 338 SDDELPYGWERIDDPAYGTYYIDHVNKQTQYENP 371
+D +LP GW R+ D + GTYY TQ+E P
Sbjct: 16 TDSDLPAGWMRVQDTS-GTYYWHIPTGTTQWEPP 48
>pdb|2YSB|A Chain A, Solution Structure Of The First Ww Domain From The Mouse
Salvador Homolog 1 Protein (Sav1)
Length = 49
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDP 325
W +T +G Y+IDHN++T+ W P
Sbjct: 16 WSVDWTMRGRKYYIDHNTNTTHWSHP 41
>pdb|3SV6|A Chain A, Crystal Structure Of Ns34A PROTEASE IN COMPLEX WITH
TELAPREVIR
Length = 203
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 1096 HAEAIEIIRNGDSTVRLLIKR---------GGSVVAPTDNAAGIYSSDTSSNYWSRAI 1144
HA+ I + R GDS LL R GG ++ P +A GI+ + S+ ++A+
Sbjct: 131 HADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVSTRGVAKAV 188
>pdb|3SV9|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT A156T IN COMPLEX
WITH Telaprevir
Length = 203
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 1096 HAEAIEIIRNGDSTVRLLIKR---------GGSVVAPTDNAAGIYSSDTSSNYWSRAI 1144
HA+ I + R GDS LL R GG ++ P +A GI+ + S+ ++A+
Sbjct: 131 HADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRTAVSTRGVAKAV 188
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 156 GELNGVDYTFLSIEEFKQLEKSGCLLESGLYEGNHYGTPK 195
GE +G DY F++ E ++ +G +E + GN YGT K
Sbjct: 46 GEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSK 85
>pdb|3SU2|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT A156T IN COMPLEX
WITH Danoprevir
pdb|3SU6|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT A156T IN COMPLEX
WITH Vaniprevir
pdb|3SUG|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT A156T IN COMPLEX
WITH MK- 5172
Length = 203
Score = 30.4 bits (67), Expect = 6.5, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 1096 HAEAIEIIRNGDSTVRLLIKR---------GGSVVAPTDNAAGIYSSDTSSNYWSRAI 1144
HA+ I + R GDS LL R GG ++ P +A GI+ + S+ ++A+
Sbjct: 131 HADVIPVRRRGDSRGSLLSPRPISYLKGSAGGPLLCPAGHAVGIFRTAVSTRGVAKAV 188
>pdb|2L97|A Chain A, Solution Structure Of Htra Pdz Domain From Streptococcus
Pneumoniae
Length = 134
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
++SV N PA GHL+ DV+ V+DK + T D+ S + S G+T+++ R
Sbjct: 61 VRSVQSNMPA--NGHLEKYDVITKVDDKEIASST--DLQSALYNHSIGDTIKITYYR 113
>pdb|3M5L|A Chain A, Crystal Structure Of Hcv Ns34A PROTEASE IN COMPLEX WITH
ITMN-191
pdb|3M5M|A Chain A, Avoiding Drug Resistance Against Hcv Ns34A PROTEASE
INHIBITORS
pdb|3M5M|B Chain B, Avoiding Drug Resistance Against Hcv Ns34A PROTEASE
INHIBITORS
pdb|3M5N|A Chain A, Crystal Structure Of Hcv Ns34A PROTEASE IN COMPLEX WITH
N-Terminal Product 4b5a
pdb|3M5N|B Chain B, Crystal Structure Of Hcv Ns34A PROTEASE IN COMPLEX WITH
N-Terminal Product 4b5a
pdb|3M5N|C Chain C, Crystal Structure Of Hcv Ns34A PROTEASE IN COMPLEX WITH
N-Terminal Product 4b5a
pdb|3M5N|D Chain D, Crystal Structure Of Hcv Ns34A PROTEASE IN COMPLEX WITH
N-Terminal Product 4b5a
pdb|3M5O|A Chain A, Crystal Structure Of Hcv Ns34A PROTEASE IN COMPLEX WITH
N-Terminal Product 5a5b
pdb|3M5O|B Chain B, Crystal Structure Of Hcv Ns34A PROTEASE IN COMPLEX WITH
N-Terminal Product 5a5b
pdb|3RC4|A Chain A, Molecular Mechanisms Of Viral And Host-Cell Substrate
Recognition By Hcv Ns34A PROTEASE
pdb|3RC5|A Chain A, Molecular Mechanisms Of Viral And Host-Cell Substrate
Recognition By Hcv Ns34A PROTEASE
pdb|3RC6|A Chain A, Molecular Mechanisms Of Viral And Host-Cell Substrate
Recognition By Hcv Ns34A PROTEASE
pdb|3SU3|A Chain A, Crystal Structure Of Ns34A PROTEASE IN COMPLEX WITH
VANIPREVIR
pdb|3SUD|A Chain A, Crystal Structure Of Ns34A PROTEASE IN COMPLEX WITH MK-5172
pdb|3SUD|B Chain B, Crystal Structure Of Ns34A PROTEASE IN COMPLEX WITH MK-5172
pdb|3SUD|C Chain C, Crystal Structure Of Ns34A PROTEASE IN COMPLEX WITH MK-5172
pdb|3SUD|D Chain D, Crystal Structure Of Ns34A PROTEASE IN COMPLEX WITH MK-5172
Length = 203
Score = 30.0 bits (66), Expect = 7.0, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 1096 HAEAIEIIRNGDSTVRLLIKR---------GGSVVAPTDNAAGIYSSDTSSNYWSRAI 1144
HA+ I + R GDS LL R GG ++ P +A GI+ + S+ ++A+
Sbjct: 131 HADVIPVRRRGDSRGSLLSPRPISYLKGSAGGPLLCPAGHAVGIFRAAVSTRGVAKAV 188
>pdb|2LPD|A Chain A, Solution Structure Of A Mbth-Like Protein From
Burkholderia Pseudomallei, The Etiological Agent
Responsible For Melioidosis, Seattle Structural Genomics
Center For Infectious Disease Target Bupsa.13472.B
Length = 95
Score = 30.0 bits (66), Expect = 8.0, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 16/78 (20%)
Query: 309 EVYFIDHNS--STSSWLDPRLCKFQKKLEDCSDDELPYGWERIDDPAYGTYYIDHVNKQT 366
E+YF+ N+ S W+D R LP GWE + +PA + + +
Sbjct: 25 ELYFVVRNNEGQYSVWMDGR--------------SLPAGWETVGEPATKQQCLQRIEQLW 70
Query: 367 QYENPVLQAKHRDQGAGP 384
P +H +Q +GP
Sbjct: 71 TDMVPASVREHLNQHSGP 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,767,156
Number of Sequences: 62578
Number of extensions: 1553958
Number of successful extensions: 4245
Number of sequences better than 100.0: 340
Number of HSP's better than 100.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 3016
Number of HSP's gapped (non-prelim): 1061
length of query: 1145
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1036
effective length of database: 8,152,335
effective search space: 8445819060
effective search space used: 8445819060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)