Query psy6910
Match_columns 1145
No_of_seqs 867 out of 6236
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 21:35:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3209|consensus 100.0 2E-126 5E-131 1072.3 64.8 922 79-1118 2-983 (984)
2 KOG3209|consensus 100.0 1.3E-52 2.7E-57 475.0 50.3 700 102-1121 11-841 (984)
3 KOG0609|consensus 100.0 1.3E-44 2.8E-49 407.6 15.4 223 19-252 120-473 (542)
4 COG0194 Gmk Guanylate kinase [ 100.0 1.9E-35 4.1E-40 296.6 10.1 146 99-265 3-148 (191)
5 KOG3580|consensus 100.0 4.7E-29 1E-33 278.3 29.4 433 432-905 5-489 (1027)
6 PRK14737 gmk guanylate kinase; 100.0 3.7E-30 8.1E-35 269.8 10.7 148 99-266 3-151 (186)
7 PLN02772 guanylate kinase 99.9 2.7E-27 5.9E-32 267.1 9.4 149 99-266 134-282 (398)
8 smart00072 GuKc Guanylate kina 99.9 1.6E-26 3.5E-31 243.3 10.7 148 100-266 2-149 (184)
9 PF00625 Guanylate_kin: Guanyl 99.9 5.9E-27 1.3E-31 246.6 6.2 146 100-264 2-147 (183)
10 KOG3580|consensus 99.9 9.8E-23 2.1E-27 228.2 20.6 293 815-1120 5-492 (1027)
11 PRK14738 gmk guanylate kinase; 99.9 4.5E-23 9.8E-28 220.8 10.3 147 99-265 12-158 (206)
12 KOG0707|consensus 99.9 2.3E-23 4.9E-28 216.3 5.3 135 125-265 49-183 (231)
13 cd00071 GMPK Guanosine monopho 99.8 2.5E-18 5.3E-23 171.8 9.9 119 103-240 2-120 (137)
14 PRK00300 gmk guanylate kinase; 99.7 1.4E-17 3.1E-22 178.7 10.9 150 96-265 1-150 (205)
15 TIGR03263 guanyl_kin guanylate 99.7 3.9E-17 8.5E-22 171.6 10.3 146 100-265 1-146 (180)
16 KOG1891|consensus 99.6 9.5E-16 2.1E-20 154.3 5.7 78 287-375 85-162 (271)
17 COG3709 Uncharacterized compon 99.5 1.6E-14 3.5E-19 140.8 8.6 147 99-268 4-151 (192)
18 KOG3605|consensus 99.4 7.4E-13 1.6E-17 152.0 10.3 157 921-1113 647-810 (829)
19 PRK10078 ribose 1,5-bisphospho 99.4 3.5E-13 7.5E-18 142.4 5.1 144 100-266 2-145 (186)
20 KOG3550|consensus 99.4 1.4E-12 3.1E-17 123.8 8.1 82 436-520 91-172 (207)
21 PF00595 PDZ: PDZ domain (Also 99.3 4E-12 8.7E-17 115.1 9.4 80 438-520 1-81 (81)
22 PF00595 PDZ: PDZ domain (Also 99.3 3.5E-12 7.7E-17 115.4 8.5 79 24-106 1-80 (81)
23 TIGR02037 degP_htrA_DO peripla 99.3 2E-11 4.4E-16 145.6 16.5 154 944-1120 257-423 (428)
24 KOG3605|consensus 99.3 1.1E-11 2.3E-16 142.6 11.7 158 820-997 647-808 (829)
25 KOG3552|consensus 99.3 1.7E-12 3.8E-17 153.3 5.4 130 317-522 2-132 (1298)
26 PRK10139 serine endoprotease; 99.3 3.3E-11 7.2E-16 143.6 16.4 157 944-1120 290-449 (455)
27 PRK10942 serine endoprotease; 99.3 5.4E-11 1.2E-15 142.4 17.1 154 944-1120 311-467 (473)
28 KOG3550|consensus 99.3 1.1E-11 2.3E-16 117.9 7.9 88 1032-1120 90-177 (207)
29 PRK10779 zinc metallopeptidase 99.3 4.5E-11 9.8E-16 143.0 15.1 154 945-1120 127-281 (449)
30 TIGR02322 phosphon_PhnN phosph 99.2 2.4E-11 5.3E-16 127.5 10.0 143 100-265 1-144 (179)
31 TIGR02037 degP_htrA_DO peripla 99.2 2.2E-10 4.8E-15 136.8 15.9 145 843-1003 256-420 (428)
32 PRK10139 serine endoprotease; 99.2 3.5E-10 7.7E-15 134.8 16.9 165 817-1003 268-446 (455)
33 KOG3549|consensus 99.2 4.9E-11 1.1E-15 127.8 7.9 99 6-107 39-137 (505)
34 PRK10942 serine endoprotease; 99.1 9.4E-10 2E-14 131.9 18.5 145 843-1003 310-464 (473)
35 TIGR00054 RIP metalloprotease 99.1 4.6E-10 1E-14 133.0 14.0 135 944-1120 128-263 (420)
36 PRK10779 zinc metallopeptidase 99.1 1.4E-09 3E-14 130.3 16.3 141 845-1003 127-278 (449)
37 KOG3551|consensus 99.0 4.1E-10 9E-15 122.7 8.6 84 434-520 83-167 (506)
38 KOG3549|consensus 99.0 1.4E-09 3.1E-14 116.8 9.9 114 1030-1144 52-181 (505)
39 KOG1892|consensus 99.0 1.5E-09 3.3E-14 128.7 9.3 87 433-522 931-1019(1629)
40 TIGR00054 RIP metalloprotease 98.9 1.6E-08 3.4E-13 120.1 15.1 132 843-1002 127-259 (420)
41 KOG0708|consensus 98.9 1.1E-09 2.4E-14 121.7 3.9 111 127-257 198-308 (359)
42 cd00136 PDZ PDZ domain, also c 98.8 1.8E-08 3.8E-13 88.3 9.1 68 447-519 2-69 (70)
43 smart00228 PDZ Domain present 98.8 4.7E-08 1E-12 88.8 11.5 82 437-522 3-84 (85)
44 cd00992 PDZ_signaling PDZ doma 98.8 5.2E-08 1.1E-12 88.1 10.8 79 437-519 2-81 (82)
45 cd00992 PDZ_signaling PDZ doma 98.8 5.7E-08 1.2E-12 87.8 10.9 79 1034-1114 2-81 (82)
46 KOG3553|consensus 98.8 3.5E-09 7.6E-14 94.0 2.7 86 433-522 13-116 (124)
47 KOG3606|consensus 98.7 2.4E-08 5.2E-13 104.4 7.6 85 25-112 162-256 (358)
48 KOG3551|consensus 98.7 4.2E-08 9.1E-13 107.4 9.7 83 1033-1116 85-168 (506)
49 smart00228 PDZ Domain present 98.7 1.5E-07 3.2E-12 85.5 12.0 83 1034-1118 3-85 (85)
50 PRK08356 hypothetical protein; 98.7 5.5E-09 1.2E-13 111.3 2.1 130 100-258 5-141 (195)
51 PF00397 WW: WW domain; Inter 98.7 1.9E-08 4E-13 72.8 3.7 30 296-325 1-31 (31)
52 KOG3651|consensus 98.7 7.4E-08 1.6E-12 102.1 9.1 80 438-520 7-87 (429)
53 PF13180 PDZ_2: PDZ domain; PD 98.6 1.2E-07 2.6E-12 86.0 9.0 71 447-522 2-72 (82)
54 cd00136 PDZ PDZ domain, also c 98.6 1.6E-07 3.5E-12 82.2 9.1 67 1044-1114 2-69 (70)
55 KOG3553|consensus 98.6 5E-08 1.1E-12 86.8 4.9 73 1044-1118 36-117 (124)
56 KOG3571|consensus 98.6 1.5E-07 3.2E-12 106.5 9.2 90 433-522 247-339 (626)
57 PF13180 PDZ_2: PDZ domain; PD 98.6 3.2E-07 6.9E-12 83.2 9.5 72 1044-1120 2-75 (82)
58 smart00456 WW Domain with 2 co 98.5 1.2E-07 2.6E-12 69.4 4.0 31 296-326 1-31 (32)
59 cd00988 PDZ_CTP_protease PDZ d 98.5 6.5E-07 1.4E-11 81.6 9.7 71 446-522 2-72 (85)
60 KOG1892|consensus 98.5 3.3E-07 7.2E-12 109.5 8.4 90 1029-1119 930-1021(1629)
61 cd00988 PDZ_CTP_protease PDZ d 98.4 1.9E-06 4.1E-11 78.5 9.6 69 1044-1117 3-72 (85)
62 KOG1891|consensus 98.4 3E-07 6.4E-12 93.8 4.1 64 339-413 91-155 (271)
63 KOG3651|consensus 98.4 1.3E-06 2.8E-11 92.9 8.9 83 23-108 6-88 (429)
64 PF00397 WW: WW domain; Inter 98.3 5E-07 1.1E-11 65.4 3.8 30 342-371 1-31 (31)
65 KOG1421|consensus 98.3 0.0029 6.3E-08 75.0 36.0 58 461-523 303-360 (955)
66 cd00201 WW Two conserved trypt 98.3 8E-07 1.7E-11 64.5 3.9 30 297-326 1-30 (31)
67 KOG3938|consensus 98.3 9.6E-07 2.1E-11 92.5 5.5 88 430-520 121-208 (334)
68 cd00991 PDZ_archaeal_metallopr 98.3 4.1E-06 8.8E-11 75.4 8.6 61 1057-1120 9-71 (79)
69 KOG3571|consensus 98.2 3.6E-06 7.8E-11 95.6 9.4 90 1030-1119 247-341 (626)
70 cd00989 PDZ_metalloprotease PD 98.2 6.7E-06 1.5E-10 73.7 9.1 68 1045-1119 3-71 (79)
71 smart00456 WW Domain with 2 co 98.2 2.4E-06 5.2E-11 62.5 4.0 31 342-372 1-31 (32)
72 COG0793 Prc Periplasmic protea 98.1 4.4E-06 9.5E-11 98.2 8.1 82 436-522 90-171 (406)
73 cd00990 PDZ_glycyl_aminopeptid 98.1 1E-05 2.2E-10 72.8 8.1 65 448-522 3-67 (80)
74 cd00991 PDZ_archaeal_metallopr 98.1 1.3E-05 2.9E-10 72.0 8.4 60 460-522 9-68 (79)
75 cd00990 PDZ_glycyl_aminopeptid 98.1 1.4E-05 3.1E-10 71.8 8.4 68 1045-1120 3-70 (80)
76 KOG3606|consensus 98.0 1.5E-05 3.2E-10 84.0 8.8 87 1031-1117 157-253 (358)
77 cd00989 PDZ_metalloprotease PD 98.0 2.3E-05 5E-10 70.2 8.6 67 448-522 3-69 (79)
78 KOG4371|consensus 98.0 1.8E-05 3.9E-10 96.6 9.7 179 433-677 1145-1329(1332)
79 cd00201 WW Two conserved trypt 98.0 7.7E-06 1.7E-10 59.3 3.9 30 343-372 1-30 (31)
80 PRK11186 carboxy-terminal prot 98.0 1.3E-05 2.8E-10 99.0 7.6 75 443-522 241-320 (667)
81 KOG4371|consensus 98.0 2.2E-05 4.8E-10 95.9 9.2 180 921-1117 1149-1329(1332)
82 cd00986 PDZ_LON_protease PDZ d 97.9 3.6E-05 7.9E-10 69.1 8.4 59 1058-1120 8-68 (79)
83 cd00987 PDZ_serine_protease PD 97.9 3.6E-05 7.7E-10 70.8 8.3 60 1058-1120 24-85 (90)
84 KOG3552|consensus 97.9 9.1E-06 2E-10 97.8 5.4 77 1033-1117 56-132 (1298)
85 COG5104 PRP40 Splicing factor 97.9 3E-06 6.5E-11 94.3 1.0 70 298-374 15-86 (590)
86 PLN00049 carboxyl-terminal pro 97.9 3.6E-05 7.9E-10 90.7 10.2 76 445-522 84-161 (389)
87 PRK00091 miaA tRNA delta(2)-is 97.9 2.3E-06 4.9E-11 96.8 -0.5 122 100-255 4-133 (307)
88 cd00986 PDZ_LON_protease PDZ d 97.9 5.1E-05 1.1E-09 68.1 8.4 57 462-522 9-65 (79)
89 KOG3938|consensus 97.8 2.2E-05 4.7E-10 82.6 4.9 82 596-677 125-210 (334)
90 TIGR00225 prc C-terminal pepti 97.8 6.1E-05 1.3E-09 87.2 9.1 72 445-522 50-121 (334)
91 cd00987 PDZ_serine_protease PD 97.8 9.7E-05 2.1E-09 67.9 8.2 59 461-522 24-82 (90)
92 COG0793 Prc Periplasmic protea 97.7 7.7E-05 1.7E-09 87.8 9.2 73 1042-1118 99-172 (406)
93 PLN00049 carboxyl-terminal pro 97.7 0.00011 2.5E-09 86.5 10.3 76 1043-1119 85-163 (389)
94 TIGR00225 prc C-terminal pepti 97.7 0.00011 2.3E-09 85.2 9.6 72 1043-1119 51-123 (334)
95 KOG3542|consensus 97.7 4.6E-05 1E-09 88.8 6.2 85 433-522 533-619 (1283)
96 KOG3542|consensus 97.7 5.1E-05 1.1E-09 88.4 6.4 84 1030-1116 533-618 (1283)
97 TIGR01713 typeII_sec_gspC gene 97.6 0.00026 5.7E-09 78.3 9.3 61 1057-1120 190-252 (259)
98 TIGR01713 typeII_sec_gspC gene 97.5 0.00035 7.7E-09 77.3 9.2 61 460-523 190-250 (259)
99 KOG3259|consensus 97.5 4.7E-05 1E-09 73.2 1.5 34 294-327 5-39 (163)
100 KOG0609|consensus 97.4 0.00033 7.2E-09 81.6 8.3 84 1032-1118 122-206 (542)
101 PRK11186 carboxy-terminal prot 97.4 0.00034 7.4E-09 86.6 8.7 71 1043-1117 244-320 (667)
102 KOG0940|consensus 97.4 0.00018 3.9E-09 82.4 5.0 81 291-374 56-146 (358)
103 TIGR03279 cyano_FeS_chp putati 97.2 0.0027 5.8E-08 74.1 12.7 132 848-1000 2-146 (433)
104 TIGR02038 protease_degS peripl 97.2 0.00079 1.7E-08 78.4 7.9 60 1058-1120 278-339 (351)
105 KOG3834|consensus 97.2 0.0051 1.1E-07 69.9 13.4 142 844-1002 15-166 (462)
106 PRK10898 serine endoprotease; 97.1 0.00097 2.1E-08 77.6 8.1 60 1058-1120 279-340 (353)
107 TIGR02038 protease_degS peripl 97.1 0.0012 2.6E-08 76.9 7.8 59 461-522 278-336 (351)
108 PRK10898 serine endoprotease; 97.0 0.0015 3.3E-08 75.9 8.3 59 461-522 279-337 (353)
109 KOG3834|consensus 97.0 0.0045 9.8E-08 70.3 10.8 142 945-1116 16-166 (462)
110 TIGR02860 spore_IV_B stage IV 96.9 0.0039 8.4E-08 72.3 9.4 71 1041-1120 94-173 (402)
111 KOG0606|consensus 96.6 0.0044 9.5E-08 77.9 7.5 80 1035-1115 629-714 (1205)
112 TIGR03279 cyano_FeS_chp putati 96.6 0.0034 7.3E-08 73.3 6.2 53 1062-1119 2-55 (433)
113 PF14685 Tricorn_PDZ: Tricorn 96.5 0.0071 1.5E-07 55.1 6.9 70 33-110 1-80 (88)
114 KOG3259|consensus 96.5 0.0012 2.6E-08 63.8 1.9 36 339-374 4-40 (163)
115 TIGR02860 spore_IV_B stage IV 96.5 0.037 8.1E-07 64.4 13.9 75 825-908 91-173 (402)
116 KOG4407|consensus 96.4 0.0045 9.7E-08 77.7 6.2 58 1059-1117 144-201 (1973)
117 PRK09681 putative type II secr 96.4 0.0063 1.4E-07 67.1 6.7 82 424-522 184-265 (276)
118 cd00227 CPT Chloramphenicol (C 96.3 0.0013 2.8E-08 68.8 0.7 124 99-254 1-133 (175)
119 PF04495 GRASP55_65: GRASP55/6 96.2 0.012 2.5E-07 58.7 7.1 72 1043-1117 26-101 (138)
120 TIGR00174 miaA tRNA isopenteny 96.2 0.0022 4.8E-08 71.9 2.0 84 102-213 1-94 (287)
121 KOG4407|consensus 96.2 0.0054 1.2E-07 77.0 5.2 123 824-1000 51-198 (1973)
122 KOG0606|consensus 96.1 0.0097 2.1E-07 75.0 7.2 90 427-519 617-713 (1205)
123 PF04495 GRASP55_65: GRASP55/6 96.0 0.047 1E-06 54.5 10.1 97 829-939 25-129 (138)
124 KOG1421|consensus 95.7 0.1 2.2E-06 62.5 12.9 128 844-991 303-446 (955)
125 KOG3129|consensus 95.7 0.022 4.7E-07 58.9 6.4 61 1060-1121 141-203 (231)
126 KOG1320|consensus 95.6 0.13 2.9E-06 60.7 13.3 61 1057-1120 397-459 (473)
127 KOG0155|consensus 95.6 0.019 4.2E-07 66.3 6.1 76 297-372 11-142 (617)
128 PF14685 Tricorn_PDZ: Tricorn 95.6 0.048 1E-06 49.8 7.6 59 1059-1119 13-81 (88)
129 COG3480 SdrC Predicted secrete 95.5 0.038 8.2E-07 61.0 7.9 57 462-522 131-187 (342)
130 COG3031 PulC Type II secretory 95.2 0.049 1.1E-06 57.5 7.2 83 424-522 183-265 (275)
131 KOG3129|consensus 95.1 0.043 9.4E-07 56.8 6.2 61 460-522 138-199 (231)
132 PRK00098 GTPase RsgA; Reviewed 95.1 0.013 2.9E-07 66.7 2.7 79 126-206 177-276 (298)
133 COG3975 Predicted protease wit 95.0 0.037 8.1E-07 65.0 6.3 68 441-523 446-513 (558)
134 KOG1738|consensus 94.9 0.031 6.6E-07 66.8 5.2 76 443-522 210-285 (638)
135 KOG3532|consensus 94.9 0.069 1.5E-06 63.6 7.9 67 1044-1116 387-453 (1051)
136 COG3480 SdrC Predicted secrete 94.7 0.087 1.9E-06 58.2 7.6 57 1058-1118 130-188 (342)
137 PRK09681 putative type II secr 94.5 0.061 1.3E-06 59.5 5.9 48 630-679 220-267 (276)
138 COG0265 DegQ Trypsin-like seri 94.4 0.11 2.4E-06 60.7 8.1 59 461-522 270-328 (347)
139 COG0265 DegQ Trypsin-like seri 94.2 0.12 2.6E-06 60.3 8.1 61 1057-1120 269-331 (347)
140 KOG3532|consensus 94.0 0.13 2.9E-06 61.3 7.5 69 446-522 386-454 (1051)
141 KOG1738|consensus 93.4 0.15 3.2E-06 61.2 6.7 73 1041-1116 211-283 (638)
142 COG3975 Predicted protease wit 93.0 0.091 2E-06 61.9 4.0 42 1043-1089 451-492 (558)
143 COG3031 PulC Type II secretory 92.9 0.4 8.6E-06 51.0 8.3 68 1036-1119 198-267 (275)
144 KOG1320|consensus 90.2 0.58 1.2E-05 55.6 6.7 59 461-522 398-456 (473)
145 PRK00698 tmk thymidylate kinas 89.5 0.17 3.7E-06 54.0 1.7 126 99-254 2-150 (205)
146 COG5104 PRP40 Splicing factor 89.4 0.11 2.5E-06 58.9 0.2 63 343-410 14-77 (590)
147 COG5021 HUL4 Ubiquitin-protein 89.1 0.091 2E-06 66.9 -1.0 81 293-373 385-478 (872)
148 COG5021 HUL4 Ubiquitin-protein 88.2 0.084 1.8E-06 67.2 -2.1 126 287-412 290-472 (872)
149 PF12812 PDZ_1: PDZ-like domai 86.4 1.3 2.8E-05 39.7 4.9 43 49-95 33-75 (78)
150 PF12812 PDZ_1: PDZ-like domai 84.0 2.5 5.5E-05 37.8 5.7 47 1059-1108 31-77 (78)
151 KOG0940|consensus 82.7 1.4 3E-05 51.1 4.4 74 338-413 57-140 (358)
152 KOG4286|consensus 80.3 0.51 1.1E-05 57.3 -0.2 29 300-328 354-382 (966)
153 PLN02840 tRNA dimethylallyltra 79.9 0.44 9.6E-06 56.2 -0.8 87 99-212 20-115 (421)
154 KOG0707|consensus 77.3 0.25 5.4E-06 52.9 -3.5 192 7-204 8-214 (231)
155 KOG0792|consensus 77.0 1.2 2.6E-05 56.7 1.6 71 25-95 708-797 (1144)
156 KOG0792|consensus 75.7 3 6.5E-05 53.3 4.5 65 446-510 715-798 (1144)
157 KOG4286|consensus 75.5 0.91 2E-05 55.3 0.0 29 345-373 353-381 (966)
158 PF11874 DUF3394: Domain of un 67.9 36 0.00079 35.6 9.6 84 880-973 60-150 (183)
159 COG0750 Predicted membrane-ass 65.1 13 0.00029 43.7 6.8 53 1061-1116 132-188 (375)
160 KOG0155|consensus 64.5 5.7 0.00012 46.8 3.3 27 300-326 116-142 (617)
161 PF07931 CPT: Chloramphenicol 61.9 6.1 0.00013 41.2 2.7 117 100-254 1-132 (174)
162 PF13671 AAA_33: AAA domain; P 61.0 2.3 5.1E-05 42.2 -0.5 114 102-256 1-122 (143)
163 PRK14530 adenylate kinase; Pro 58.3 7.4 0.00016 42.0 2.7 56 208-265 108-172 (215)
164 PF11874 DUF3394: Domain of un 55.9 72 0.0016 33.5 9.3 39 1044-1087 112-150 (183)
165 KOG4334|consensus 55.6 10 0.00023 44.4 3.4 36 291-326 150-185 (650)
166 PHA02530 pseT polynucleotide k 51.3 24 0.00051 40.1 5.5 119 101-261 3-134 (300)
167 PRK07667 uridine kinase; Provi 44.7 67 0.0014 34.0 7.3 77 174-261 91-168 (193)
168 PRK06761 hypothetical protein; 40.0 47 0.001 37.5 5.5 120 100-254 3-129 (282)
169 KOG2921|consensus 39.1 45 0.00098 38.5 5.0 46 1057-1105 219-265 (484)
170 COG0750 Predicted membrane-ass 38.8 76 0.0016 37.3 7.4 55 847-904 132-188 (375)
171 cd01672 TMPK Thymidine monopho 38.8 9.8 0.00021 39.9 -0.1 115 126-255 13-149 (200)
172 PRK12339 2-phosphoglycerate ki 38.7 48 0.001 35.3 5.1 57 196-256 88-144 (197)
173 PRK06762 hypothetical protein; 38.4 66 0.0014 32.8 6.0 51 200-254 63-118 (166)
174 smart00391 MBD Methyl-CpG bind 38.3 32 0.0007 30.7 3.1 26 293-318 5-38 (77)
175 cd00122 MBD MeCP2, MBD1, MBD2, 34.8 40 0.00087 28.6 3.0 25 294-318 4-35 (62)
176 cd01396 MeCP2_MBD MeCP2, MBD1, 31.9 46 0.001 29.7 3.0 24 295-318 6-36 (77)
177 KOG4334|consensus 31.6 41 0.00089 39.7 3.3 36 339-374 152-187 (650)
178 KOG1712|consensus 29.2 1.7E+02 0.0038 29.8 6.7 60 427-509 89-148 (183)
179 COG4100 Cystathionine beta-lya 29.1 25 0.00053 39.3 1.0 32 62-95 100-131 (416)
180 KOG1945|consensus 28.7 23 0.00049 40.4 0.6 84 435-520 99-187 (377)
181 KOG3354|consensus 25.6 2.2E+02 0.0048 29.1 6.7 20 234-254 121-140 (191)
182 KOG1703|consensus 25.5 37 0.00081 41.5 1.7 76 1044-1122 9-84 (479)
183 TIGR03574 selen_PSTK L-seryl-t 24.3 75 0.0016 35.0 3.8 102 126-254 12-118 (249)
184 PRK13810 orotate phosphoribosy 23.5 1.2E+02 0.0025 32.2 4.8 38 477-516 116-153 (187)
185 PF01429 MBD: Methyl-CpG bindi 22.3 74 0.0016 28.3 2.6 24 292-315 7-38 (77)
186 KOG2921|consensus 21.5 1.4E+02 0.0029 34.9 4.9 48 843-892 219-266 (484)
187 PRK04040 adenylate kinase; Pro 20.9 60 0.0013 34.3 2.0 39 224-264 106-148 (188)
No 1
>KOG3209|consensus
Probab=100.00 E-value=2.2e-126 Score=1072.30 Aligned_cols=922 Identities=45% Similarity=0.699 Sum_probs=737.1
Q ss_pred EecCCCHHHHHHHHHhhcCCCCcEEEEEecCCc-cCcccchhccccCCCCchHHHHhhhhccCcceeecccccCCCCCCC
Q psy6910 79 KVAGYTRRDTIAWLNHCCRSGKTLTLRTVSSAY-VTTDLRQFLNTRFPKGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGE 157 (1145)
Q Consensus 79 ~v~g~~~~~~~~~l~~~~~~~~~v~~~~~p~~~-~~~~~~~~~~l~f~k~~i~~~l~~~~~~~~~~~~v~~TTR~~r~~E 157 (1145)
.|.|++..++.-+|.+| ...|+++.+-.+. -.+++++|+.+.|+|+.+++.|.+.++.++|.+.+++|||.++.+|
T Consensus 2 rV~~~~~~~vll~i~s~---~~al~~~~~~~~~~~~k~l~~f~~~~f~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 78 (984)
T KOG3209|consen 2 RVKGLDACDVLLVISSC---KAALRTKYVIQGGYCSKDLRHFLNTRFQKGFVDHELQQSIRDNLYLFQVPCTTRRILEGE 78 (984)
T ss_pred ccccccccceeeeecch---hhhhhhHHhhhcccccccchhhhhhhhhhccchhhhcccccccccccccccccccccccc
Confidence 57888999999999999 9999999888766 7889999999999999999999999999999999999999999999
Q ss_pred cCCccEEEeCHHHHHHHHHcCCEEEEEEeCCcccCCCccchhhhhcCCCCceee-----ecCCCChhhhhhhhccccccc
Q psy6910 158 LNGVDYTFLSIEEFKQLEKSGCLLESGLYEGNHYGTPKPVKEPYVSLPQNVNLL-----PGAHPSSEGKRKRNRSNVEAM 232 (1145)
Q Consensus 158 ~~g~~Y~fvs~~~f~~~~~~~~flE~~~~~g~~YGt~~~~i~~~~~~g~~~~~i-----l~~~~~~~~~~~~~~~~~~~~ 232 (1145)
++ ||.|.+...|..+...|-|+|++.|.+|||||++..-..+-. + +++ +....+++..+++.++|..+.
T Consensus 79 ~~--d~~fs~~~~~l~l~~~~~~l~~~~~~~~~ygtPkPp~~pa~~--~--~~~~d~~~~~~~~~~es~~kr~~sy~~m~ 152 (984)
T KOG3209|consen 79 VP--DYSFSTVPIFLCLEVSGCLLEFGTYESNYYGTPKPPECPADD--D--MMLTDQELLLPPNSAESYRKRTKSYSIME 152 (984)
T ss_pred cC--ccccccchhhheeeecceeecccCcccCCCCCCCCccccCcc--c--ceeecccccCCCcchhcccccCcceeehh
Confidence 99 999999999999999999999999999999999875544322 2 333 333456778888999998888
Q ss_pred ceeEecCCChhhhhhhhhccCCC---CcccccccC---CC---CCCCCCCCCCCCCCCCCCC-CCccccCCCCCCCCcEE
Q psy6910 233 ASKSIEPDMKTNGFDNKTVNMGN---SSDYELNDN---NG---RESPPSYYNPYIGQGLKEI-DPLLELDLGPLPPRWEK 302 (1145)
Q Consensus 233 ~~ifi~pps~~~l~~rl~~rg~~---s~~~i~~~~---~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~pLP~gWe~ 302 (1145)
..-|.+|..++-+.+-..++.. +.|..++.+ .| ++.+|. ++++.. +.... ....++.++|||.+||+
T Consensus 153 -n~g~~~~eeeee~d~g~~n~~~~~~~~E~~e~s~~~s~~m~ssy~aPs-ts~s~~-~~~~~~~~~~e~~~gplp~nwem 229 (984)
T KOG3209|consen 153 -NAGITTPEEEEEEDPGWENGSGQNYSVEMEESSYPTSSDMPSSYFAPS-TSQSTT-PMDRYSPATQEDNLGPLPHNWEM 229 (984)
T ss_pred -ccCCCCcccccccCccccccCCcccchhhhhccCCccCCCcccccccc-cCCCCC-cccccCccccccccCCCCccceE
Confidence 8889999877777677777665 444444222 22 222343 244431 11111 23456778999999999
Q ss_pred EEccCCceEeeeCCCCceeccCCcchhcccccccCCCCCCCCCceeeeCCCCceEEEeCCCceeeCcCCccccccCCCCC
Q psy6910 303 AYTEKGEVYFIDHNSSTSSWLDPRLCKFQKKLEDCSDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQAKHRDQGA 382 (1145)
Q Consensus 303 ~~~~~Gr~yyidh~t~tT~W~~Pr~~~~~~~~~~~~~~~LP~gWe~~~~~~g~~yyinh~~k~t~~~~P~~~~~~~~~~~ 382 (1145)
+++++|++|||||||+||+|+|||+.+.++.+..|..++||+||+...++.+..||++|.|+.|||+.|.+.+++..+..
T Consensus 230 ayte~gevyfiDhntkttswLdprl~kkaK~~eeckd~elPygWeki~dpiYg~yyvdHiN~~sq~enpvleakrk~Q~~ 309 (984)
T KOG3209|consen 230 AYTEQGEVYFIDHNTKTTSWLDPRLTKKAKPPEECKDQELPYGWEKIEDPIYGTYYVDHINRKSQYENPVLEAKRKKQLR 309 (984)
T ss_pred eEeecCeeEeeecccccceecChhhhcccCChhhcccccccccccccCCccceeEEecccchhhhhccchhhcccchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988775543
Q ss_pred CCCCCCCCCCc-ccCCCCcccCCCCCCCccccCCCCCCCCCCcccCCCCcCccceEEEEEEecccceeEEEecCCCC-CC
Q psy6910 383 GPSEMDDNEHK-VKDSPGKRIAPQARNTLVSTSNRSNNDENYFFTLNPDELIGERIHSSLVKSLRGLGFTIVGGDDS-KE 460 (1145)
Q Consensus 383 ~~~~~~p~~w~-~~~~~g~~~~~~h~~~~~s~~~~~~~~~~~~~~~~p~~~~g~~~~v~l~k~~~glG~~i~gg~~~-~~ 460 (1145)
... |. ..+++-. +|+. -..+.|.||+||++++|+.+.+.|.|+..||||+|.||++. ++
T Consensus 310 ~~~------~~E~g~~p~~----~~p~---------~~q~Kp~fTrdPSqlkG~~ist~LvKg~~GFGfTliGGdd~~gD 370 (984)
T KOG3209|consen 310 GFD------QTETGTAPPQ----DHPS---------LIQGKPLFTRDPSQLKGELISTKLVKGYMGFGFTLIGGDDVRGD 370 (984)
T ss_pred Ccc------ceeccCCCCC----cCch---------hhccCCcccCChHHhCCeEEEEEEeecccccceEEecCCcCCCC
Confidence 211 32 1111110 0000 14578899999999999999999999999999999999853 38
Q ss_pred ccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEEEeCCCCCCCCCCCCCcceecc
Q psy6910 461 EFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDPNTEVVTTV 540 (1145)
Q Consensus 461 ~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~~~~~~~~~~~~~~~ 540 (1145)
++++|++|+++|||++||+|.+||+||.|||.|+.|+||+|||++|+.+|.|+.|.|++||+|++|++++++..+ +.+
T Consensus 371 efLqVKsvl~DGPAa~dGkle~GDviV~INg~cvlGhTHAqaV~~fqaiPvg~~V~L~lcRgyelp~dp~dp~~s--p~~ 448 (984)
T KOG3209|consen 371 EFLQVKSVLKDGPAAQDGKLETGDVIVHINGECVLGHTHAQAVKRFQAIPVGQSVDLVLCRGYELPFDPEDPVGS--PRV 448 (984)
T ss_pred ceeeeeecccCCchhhcCccccCcEEEEECCceeccccHHHHHHHhhccccCCeeeEEEecCccCCCCCcccCCC--Ccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997554 233
Q ss_pred cccCCCCCCCCCccccccCCcCCCCCCCCCCCCCCcccccccCCCCCccccccCCccEEEEEEecCCCCcceEEeccCCc
Q psy6910 541 AVNAPDLDNGSDRHLYMSANDFTDQSVKSMPDLYTSEKMVKLERPSSTDLILESDSEYLTIPIVKGAMGFGFTIADSSHG 620 (1145)
Q Consensus 541 ~~~~p~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k~~~glG~~i~~~~~g 620 (1145)
++.. .. ..+ .+..+.++....+++.......++ .++++++.+.|++.||||+|+|++.|
T Consensus 449 ~iv~-~~--------P~~----~~~~~gp~v~~~~sss~~~a~~~~--------~~el~ti~i~kgpegfgftiADsPtg 507 (984)
T KOG3209|consen 449 AIVP-SW--------PDS----STDKGGPMVTGRPSSSTHLAQHDG--------PPELTTIKIVKGPEGFGFTIADSPTG 507 (984)
T ss_pred cccc-CC--------CCC----CCCCCCCeeecCCCCccccccCCC--------CcccEEEeeecCCCCCCceeccCCCC
Confidence 3322 00 001 112222222222211111111111 27889999999999999999999999
Q ss_pred ceEEEeecccccCCCCCCCEEEEECCEecCCCCHHHHHHHHhcCCCCceEEEEEEcCCCCCCCCCCCCCCCCCCcccCCC
Q psy6910 621 QKVKKILDRQRCKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKTPTEMYTRP 700 (1145)
Q Consensus 621 ~~V~~i~~a~~~g~L~~GD~Il~INg~~v~~~s~~ea~~~Lk~~~~g~~v~L~v~R~~~~~p~~~~~~~~~~p~~~~~~~ 700 (1145)
++||+|.+..+|-+|++||.|++||+.+|++++|.+|++||++||.|..+.|+|.|++.+++.+.|. +
T Consensus 508 qrvK~ilDp~~c~gl~eGd~IVei~~rnvr~L~h~qvvdmlke~piG~r~~Llv~RGgp~s~~ktpk-------~----- 575 (984)
T KOG3209|consen 508 QRVKQILDPQDCPGLSEGDLIVEINERNVRALTHTQVVDMLKECPIGSRVHLLVKRGGPPSPSKTPK-------A----- 575 (984)
T ss_pred CceeeecCcccCCCCCCCCeEEecccccccccchHHHHHHHHhccCCcceeEEEecCCCCCCCcCcc-------h-----
Confidence 9999999999999999999999999999999999999999999999999999999998776644322 1
Q ss_pred chhcccCCCCCcccccCCCCCC-CCCCccccccccccccccccCcCCCCCCCCCcccCCCCCC-----ccccCCcccccc
Q psy6910 701 KEIVARRPKTPLVDTRSRSKTP-TENYSEYYINKELKDLDINKNIWDPQTTNPGFMQSNYSDS-----MSYCGGYNVYQV 774 (1145)
Q Consensus 701 ~~~~~~~~~~p~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~p~s-----~~~~~p~~~~~~ 774 (1145)
..++. +..+ ..+.+++... +. ..+|.. .++..|++ +++|+|+..|.
T Consensus 576 ~~r~~-------------~~~s~~~s~sap~i~------q~---~Pfpp~-----~rs~~pd~t~~~~qrkpdp~~~we- 627 (984)
T KOG3209|consen 576 ADRKE-------------NQGSNQMSSSAPLIP------QK---LPFPPT-----SRSEEPDNTRNTLQRKPDPTEEWE- 627 (984)
T ss_pred hhhcc-------------CCCCccccccccccC------CC---CCCCCc-----ccccCCcccccccccCCChHHHhh-
Confidence 11111 0000 0111111000 00 002211 13333333 45899999998
Q ss_pred cccCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceEEEEEEeecCCcccEEEccCCccCCceEEEEeCCC
Q psy6910 775 NKRKESTSFEHEQPLPSNDMRYIPPDNLGLPRVRPTNIKSVEYSDVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPG 854 (1145)
Q Consensus 775 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~k~~~glGf~l~gg~~~~~~i~V~~V~pg 854 (1145)
+|++++++++.+++.+. ..+. +.+.| .|.|...||||+|.||.+.+.+++|+.|++.
T Consensus 628 ---~Sraiyesr~~Ps~tsn------------------~~pd-k~ldV-~L~rkesGFGFRiLGG~ep~qpi~iG~Iv~l 684 (984)
T KOG3209|consen 628 ---KSRAIYESRMRPSSTSN------------------QKPD-KELDV-FLRRKESGFGFRILGGDEPGQPIYIGAIVPL 684 (984)
T ss_pred ---hcccchhccCCCCCccc------------------cCCc-cceeE-EEEeeccccceEEecCCCCCCeeEEeeeeec
Confidence 89999999976333321 1233 67888 9999999999999999999999999999999
Q ss_pred ChhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhccCCCeEEEEEeeccCCCCcccc----cCCCCCeEEEEeccCC
Q psy6910 855 GAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTS----MMLGYPYDVTITRREN 930 (1145)
Q Consensus 855 s~A~~~G~L~~GD~IlsVNG~~v~~~s~~~~~~~L~~~~~~~~v~L~v~r~~~~~~~~~~----~~~~~~~~V~l~r~~~ 930 (1145)
|+|+.+|||+.||+|+.|+|++|.+.+|.+++.+|..++.++.|.|+|+|........++ .....+++|.++|+++
T Consensus 685 GaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~LtVRRkv~~~~~~rsp~~s~~~~~~yDV~lhR~EN 764 (984)
T KOG3209|consen 685 GAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNLTVRRKVRTGPARRSPRNSAAPSGPYDVVLHRKEN 764 (984)
T ss_pred ccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCceEEEEeeeeeeccccCCcccccCCCCCeeeEEecccC
Confidence 999999999999999999999999999999999999999999999999998766533222 2345689999999999
Q ss_pred CcccEEEeecCCCCCceEEEeCCCCcccccCCCCCCCEEEEECCeeecccCHHHHHHHHHcCCCEEEEEEeCCCCCCC--
Q psy6910 931 EGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDD-- 1008 (1145)
Q Consensus 931 ~~lG~~l~~~~~~~g~~I~~v~~gs~A~~~G~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~L~v~r~~~~~~-- 1008 (1145)
++|||.|.++.+..+.-|..|++||||++||+|++||+|++|||++|.+++|.+++.+||.+|..|+|+|..+.....
T Consensus 765 eGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLtIip~ee~~~~~ 844 (984)
T KOG3209|consen 765 EGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLTIIPPEEAGPPT 844 (984)
T ss_pred CceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEEEcChhccCCCC
Confidence 999999999888877779999999999999999999999999999999999999999999999999999954322211
Q ss_pred ---CCCCcccCccCC-----------C-------CCC---------CCCCCCcccEEEEeecCCcceeEEEEccCCcccc
Q psy6910 1009 ---ASSTTSVSAASH-----------R-------EYE---------EGGEHDEQYHAIELSRGTRGFGFSIRGGREFQNM 1058 (1145)
Q Consensus 1009 ---~~~~~s~~~~~~-----------~-------~~p---------~~~~~~~~~~~v~l~k~~~~lG~sl~gg~~~~~~ 1058 (1145)
+...+++..+.+ + +.| .....+..+++|+|+++..+|||+|+||.++ +|
T Consensus 845 ~~~sa~~~s~~t~~~~~~q~~glp~~~~s~~~~~pqpdt~~~~~~~~r~~qn~~~~~VelErG~kGFGFSiRGGrey-nM 923 (984)
T KOG3209|consen 845 SMTSAEKQSPFTQNGPYEQQYGLPGPRPSVYEEHPQPDTFQGLSINDRMSQNGDLYTVELERGAKGFGFSIRGGREY-NM 923 (984)
T ss_pred CCcchhhcCcccccCCHhHccCCCCCCccccccCCCCccccceeccccccccCCeeEEEeeccccccceEeeccccc-cc
Confidence 111222222211 0 011 1234577899999999999999999999887 99
Q ss_pred cEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCC
Q psy6910 1059 ALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGG 1118 (1145)
Q Consensus 1059 ~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~~~v~L~v~R~~ 1118 (1145)
++||.++.++|||.++||+++||+|++|||+++++|+|+.|+++||+.+..|.|.++|+.
T Consensus 924 ~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~vll~Lr~g~ 983 (984)
T KOG3209|consen 924 DLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRRVLLLLRRGT 983 (984)
T ss_pred ceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeEEEEEeccCC
Confidence 999999999999999999999999999999999999999999999998888888887753
No 2
>KOG3209|consensus
Probab=100.00 E-value=1.3e-52 Score=474.98 Aligned_cols=700 Identities=21% Similarity=0.245 Sum_probs=450.9
Q ss_pred EEEEEecCCc-cCcccchhccccCCCCchHHHHhhhhccCcceeecccccCCCCCCCcCCccEEEeCHHHHHHHHHcCCE
Q psy6910 102 LTLRTVSSAY-VTTDLRQFLNTRFPKGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCL 180 (1145)
Q Consensus 102 v~~~~~p~~~-~~~~~~~~~~l~f~k~~i~~~l~~~~~~~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~~~~~f 180 (1145)
|.++|..-.. ..+....+.|++|++..+...++....-..+....+++++.+|.++.-+..|+|+.... ...-..--
T Consensus 11 vll~i~s~~~al~~~~~~~~~~~~k~l~~f~~~~f~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~--d~~fs~~~ 88 (984)
T KOG3209|consen 11 VLLVISSCKAALRTKYVIQGGYCSKDLRHFLNTRFQKGFVDHELQQSIRDNLYLFQVPCTTRRILEGEVP--DYSFSTVP 88 (984)
T ss_pred eeeeecchhhhhhhHHhhhcccccccchhhhhhhhhhccchhhhcccccccccccccccccccccccccC--ccccccch
Confidence 3444443333 55666777999999988887665442334455689999999999999999999986544 22111222
Q ss_pred EEEEEeCCcccCCCccchhhhhcCCCCceeeecCCCChhhhhhhhcccccccceeEecCCChhhhhhhhhccCCCCcccc
Q psy6910 181 LESGLYEGNHYGTPKPVKEPYVSLPQNVNLLPGAHPSSEGKRKRNRSNVEAMASKSIEPDMKTNGFDNKTVNMGNSSDYE 260 (1145)
Q Consensus 181 lE~~~~~g~~YGt~~~~i~~~~~~g~~~~~il~~~~~~~~~~~~~~~~~~~~~~ifi~pps~~~l~~rl~~rg~~s~~~i 260 (1145)
++.+.|.++ |++.... .+.+.. -
T Consensus 89 ~~l~l~~~~--------------------~~l~~~~----------~~~~~y----g----------------------- 111 (984)
T KOG3209|consen 89 IFLCLEVSG--------------------CLLEFGT----------YESNYY----G----------------------- 111 (984)
T ss_pred hhheeeecc--------------------eeecccC----------cccCCC----C-----------------------
Confidence 222222222 2222111 000000 0
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCcEEEEccCCceEeeeCCCCceeccCCcch-hcc--------
Q psy6910 261 LNDNNGRESPPSYYNPYIGQGLKEIDPLLELDLGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRLC-KFQ-------- 331 (1145)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pLP~gWe~~~~~~Gr~yyidh~t~tT~W~~Pr~~-~~~-------- 331 (1145)
.+-|+. .+++.. +-.-+..+.||++|++.+...+.-|+++||+.+|+|++++-. ..+
T Consensus 112 -------tPkPp~----~pa~~~---~~~~d~~~~~~~~~~es~~kr~~sy~~m~n~g~~~~eeeee~d~g~~n~~~~~~ 177 (984)
T KOG3209|consen 112 -------TPKPPE----CPADDD---MMLTDQELLLPPNSAESYRKRTKSYSIMENAGITTPEEEEEEDPGWENGSGQNY 177 (984)
T ss_pred -------CCCCcc----ccCccc---ceeecccccCCCcchhcccccCcceeehhccCCCCcccccccCccccccCCccc
Confidence 001110 001111 123355677888888888888888888888888888777532 000
Q ss_pred ---------------------------ccc--------ccCCCCCCCCCceeeeCCCCceEEEeCCCceeeCcCCccccc
Q psy6910 332 ---------------------------KKL--------EDCSDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQAK 376 (1145)
Q Consensus 332 ---------------------------~~~--------~~~~~~~LP~gWe~~~~~~g~~yyinh~~k~t~~~~P~~~~~ 376 (1145)
... .+..+.+||..||++++++|.+||+||+|+.|+|-+||+..+
T Consensus 178 ~~E~~e~s~~~s~~m~ssy~aPsts~s~~~~~~~~~~~~e~~~gplp~nwemayte~gevyfiDhntkttswLdprl~kk 257 (984)
T KOG3209|consen 178 SVEMEESSYPTSSDMPSSYFAPSTSQSTTPMDRYSPATQEDNLGPLPHNWEMAYTEQGEVYFIDHNTKTTSWLDPRLTKK 257 (984)
T ss_pred chhhhhccCCccCCCcccccccccCCCCCcccccCccccccccCCCCccceEeEeecCeeEeeecccccceecChhhhcc
Confidence 000 011134799999999999999999999999999999996544
Q ss_pred cCCCCCCCCCCCCCCCc-ccCCCCcccCCCCCCCccccCCCCCCCCCCcccCCCCcCccceEEEEEEecc--cceeEEEe
Q psy6910 377 HRDQGAGPSEMDDNEHK-VKDSPGKRIAPQARNTLVSTSNRSNNDENYFFTLNPDELIGERIHSSLVKSL--RGLGFTIV 453 (1145)
Q Consensus 377 ~~~~~~~~~~~~p~~w~-~~~~~g~~~~~~h~~~~~s~~~~~~~~~~~~~~~~p~~~~g~~~~v~l~k~~--~glG~~i~ 453 (1145)
.+..-.-....+|.+|+ ..+..=..||.+|.+..+..-+. . . ++.+.. .||--+=.
T Consensus 258 aK~~eeckd~elPygWeki~dpiYg~yyvdHiN~~sq~enp-----v-------l---------eakrk~Q~~~~~~~E~ 316 (984)
T KOG3209|consen 258 AKPPEECKDQELPYGWEKIEDPIYGTYYVDHINRKSQYENP-----V-------L---------EAKRKKQLRGFDQTET 316 (984)
T ss_pred cCChhhcccccccccccccCCccceeEEecccchhhhhccc-----h-------h---------hcccchhhcCccceec
Confidence 33221113456999999 44444456677777776654111 0 0 000000 00000000
Q ss_pred cCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEEEeCCCCCCCCCCCC
Q psy6910 454 GGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDPN 533 (1145)
Q Consensus 454 gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~~~~~~~~ 533 (1145)
|. .+ +.+.-..+ ++.++
T Consensus 317 g~-~p----------------------------------------~~~~p~~~--------------q~Kp~-------- 333 (984)
T KOG3209|consen 317 GT-AP----------------------------------------PQDHPSLI--------------QGKPL-------- 333 (984)
T ss_pred cC-CC----------------------------------------CCcCchhh--------------ccCCc--------
Confidence 00 00 00000000 00000
Q ss_pred CcceecccccCCCCCCCCCccccccCCcCCCCCCCCCCCCCCcccccccCCCCCccccccCCccEEEEEEecCCCCcceE
Q psy6910 534 TEVVTTVAVNAPDLDNGSDRHLYMSANDFTDQSVKSMPDLYTSEKMVKLERPSSTDLILESDSEYLTIPIVKGAMGFGFT 613 (1145)
Q Consensus 534 ~~~~~~~~~~~p~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k~~~glG~~ 613 (1145)
+ +..+....++.+.++|+|+..||||+
T Consensus 334 ----------------------f-------------------------------TrdPSqlkG~~ist~LvKg~~GFGfT 360 (984)
T KOG3209|consen 334 ----------------------F-------------------------------TRDPSQLKGELISTKLVKGYMGFGFT 360 (984)
T ss_pred ----------------------c-------------------------------cCChHHhCCeEEEEEEeecccccceE
Confidence 0 00001125788999999999999999
Q ss_pred EeccC--Ccc---eEEEeec---ccccCCCCCCCEEEEECCEecCCCCHHHHHHHHhcCCCCceEEEEEEcCCCCCCCCC
Q psy6910 614 IADSS--HGQ---KVKKILD---RQRCKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTS 685 (1145)
Q Consensus 614 i~~~~--~g~---~V~~i~~---a~~~g~L~~GD~Il~INg~~v~~~s~~ea~~~Lk~~~~g~~v~L~v~R~~~~~p~~~ 685 (1145)
|.++. .|. .||.|+. |++||+|.+||+|+.|||..+.+.+|.||+++++..|.|..|.|+|+|+..-.
T Consensus 361 liGGdd~~gDefLqVKsvl~DGPAa~dGkle~GDviV~INg~cvlGhTHAqaV~~fqaiPvg~~V~L~lcRgyelp---- 436 (984)
T KOG3209|consen 361 LIGGDDVRGDEFLQVKSVLKDGPAAQDGKLETGDVIVHINGECVLGHTHAQAVKRFQAIPVGQSVDLVLCRGYELP---- 436 (984)
T ss_pred EecCCcCCCCceeeeeecccCCchhhcCccccCcEEEEECCceeccccHHHHHHHhhccccCCeeeEEEecCccCC----
Confidence 99877 453 4888876 99999999999999999999999999999999999999999999999985321
Q ss_pred CCCCCCCCCcccCCCchhcccCCCCCcccccCCCCCCCCCCccccccccccccccccCcCCCCCCCCCcccCCCCCCccc
Q psy6910 686 PPFRSKTPTEMYTRPKEIVARRPKTPLVDTRSRSKTPTENYSEYYINKELKDLDINKNIWDPQTTNPGFMQSNYSDSMSY 765 (1145)
Q Consensus 686 ~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~p~s~~~ 765 (1145)
|++..|.. +....+.+ ..| . + +..+
T Consensus 437 --~dp~dp~~--sp~~~iv~---~~P--------------------~--------------~--------------~~~~ 461 (984)
T KOG3209|consen 437 --FDPEDPVG--SPRVAIVP---SWP--------------------D--------------S--------------STDK 461 (984)
T ss_pred --CCCcccCC--CCcccccc---CCC--------------------C--------------C--------------CCCC
Confidence 11111100 00000000 000 0 0 0000
Q ss_pred cCCcccccccccCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceEEEEEEeecCCcccEEEccCCccCCc
Q psy6910 766 CGGYNVYQVNKRKESTSFEHEQPLPSNDMRYIPPDNLGLPRVRPTNIKSVEYSDVMVITLLRQENGFGFRIVGGTEEGSQ 845 (1145)
Q Consensus 766 ~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~k~~~glGf~l~gg~~~~~~ 845 (1145)
..|.-+- +.+++.+... .....+-+++ .+.|+.+||||+|+.+- .+
T Consensus 462 ~gp~v~~----~~sss~~~a~--------------------------~~~~~el~ti-~i~kgpegfgftiADsP---tg 507 (984)
T KOG3209|consen 462 GGPMVTG----RPSSSTHLAQ--------------------------HDGPPELTTI-KIVKGPEGFGFTIADSP---TG 507 (984)
T ss_pred CCCeeec----CCCCcccccc--------------------------CCCCcccEEE-eeecCCCCCCceeccCC---CC
Confidence 0110000 0000000000 0001233455 88999999999998643 22
Q ss_pred eEEEEeCCCChhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhccCCCeEEEEEeeccCCCCcc-------------
Q psy6910 846 VSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAET------------- 912 (1145)
Q Consensus 846 i~V~~V~pgs~A~~~G~L~~GD~IlsVNG~~v~~~s~~~~~~~L~~~~~~~~v~L~v~r~~~~~~~~------------- 912 (1145)
--|+.|.. +-..-| |+.||.|+++|++.|..++|.+++++|++++.+..+.|.|.|.+......
T Consensus 508 qrvK~ilD--p~~c~g-l~eGd~IVei~~rnvr~L~h~qvvdmlke~piG~r~~Llv~RGgp~s~~ktpk~~~r~~~~~s 584 (984)
T KOG3209|consen 508 QRVKQILD--PQDCPG-LSEGDLIVEINERNVRALTHTQVVDMLKECPIGSRVHLLVKRGGPPSPSKTPKAADRKENQGS 584 (984)
T ss_pred CceeeecC--cccCCC-CCCCCeEEecccccccccchHHHHHHHHhccCCcceeEEEecCCCCCCCcCcchhhhccCCCC
Confidence 35555532 334456 99999999999999999999999999999999999999999977554110
Q ss_pred ----------cc------------------------------------------cCC------CCCeEEEEeccCCCccc
Q psy6910 913 ----------TS------------------------------------------MML------GYPYDVTITRRENEGFG 934 (1145)
Q Consensus 913 ----------~~------------------------------------------~~~------~~~~~V~l~r~~~~~lG 934 (1145)
++ +.. ...++|.|.|+ ..+||
T Consensus 585 ~~~s~sap~i~q~~Pfpp~~rs~~pd~t~~~~qrkpdp~~~we~Sraiyesr~~Ps~tsn~~pdk~ldV~L~rk-esGFG 663 (984)
T KOG3209|consen 585 NQMSSSAPLIPQKLPFPPTSRSEEPDNTRNTLQRKPDPTEEWEKSRAIYESRMRPSSTSNQKPDKELDVFLRRK-ESGFG 663 (984)
T ss_pred ccccccccccCCCCCCCCcccccCCcccccccccCCChHHHhhhcccchhccCCCCCccccCCccceeEEEEee-ccccc
Confidence 00 000 13456777654 56899
Q ss_pred EEEeecCCC-CCceEEEeCCCCcccccCCCCCCCEEEEECCeeecccCHHHHHHHHHcC--CCEEEEEEeCCCCCCCCCC
Q psy6910 935 FVIISSLNK-AGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDS--GYCVTLTIGAPISGDDASS 1011 (1145)
Q Consensus 935 ~~l~~~~~~-~g~~I~~v~~gs~A~~~G~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~--~~~v~L~v~r~~~~~~~~~ 1011 (1145)
|.|.++... .+++|..|.+.+.|+++|+|+.||.|++|+|++|.+.+|.+++.++..+ ...|.|+|+|+.-....
T Consensus 664 FRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~LtVRRkv~~~~~-- 741 (984)
T KOG3209|consen 664 FRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNLTVRRKVRTGPA-- 741 (984)
T ss_pred eEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCceEEEEeeeeeeccc--
Confidence 999877654 7899999999999999999999999999999999999999999999875 45799999886322111
Q ss_pred CcccCccCCCCCCCCCCCCcccEEEEeecC-CcceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEE
Q psy6910 1012 TTSVSAASHREYEEGGEHDEQYHAIELSRG-TRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGIN 1090 (1145)
Q Consensus 1012 ~~s~~~~~~~~~p~~~~~~~~~~~v~l~k~-~~~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~ 1090 (1145)
..++. ........+.|.|+++ +++|||.|.........+ |.+|++||||+++|+|++||+|++|||++
T Consensus 742 ~rsp~---------~s~~~~~~yDV~lhR~ENeGFGFVi~sS~~kp~sg--iGrIieGSPAdRCgkLkVGDrilAVNG~s 810 (984)
T KOG3209|consen 742 RRSPR---------NSAAPSGPYDVVLHRKENEGFGFVIMSSQNKPESG--IGRIIEGSPADRCGKLKVGDRILAVNGQS 810 (984)
T ss_pred cCCcc---------cccCCCCCeeeEEecccCCceeEEEEecccCCCCC--ccccccCChhHhhccccccceEEEecCee
Confidence 01100 1112334688889875 569999998766532333 99999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHcCCCeEEEEEEeCCCcC
Q psy6910 1091 TKNMTHAEAIEIIRNGDSTVRLLIKRGGSVV 1121 (1145)
Q Consensus 1091 v~~~s~~eav~~lk~~~~~v~L~v~R~~~~~ 1121 (1145)
+.+++|.++|++||.+|-.|+|+|...+..-
T Consensus 811 I~~lsHadiv~LIKdaGlsVtLtIip~ee~~ 841 (984)
T KOG3209|consen 811 ILNLSHADIVSLIKDAGLSVTLTIIPPEEAG 841 (984)
T ss_pred eeccCchhHHHHHHhcCceEEEEEcChhccC
Confidence 9999999999999999999999998766543
No 3
>KOG0609|consensus
Probab=100.00 E-value=1.3e-44 Score=407.63 Aligned_cols=223 Identities=22% Similarity=0.283 Sum_probs=196.3
Q ss_pred ccceEeEEEeCCCCCCCceeeeccccCCCceEEEEecCCccccccCCCCCCcEEEeeCCEEecCCCHHHHHHHHHhhcCC
Q psy6910 19 QDKETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGYTRRDTIAWLNHCCRS 98 (1145)
Q Consensus 19 ~~~v~~~~~~~~~~g~~~~~i~gg~e~g~~~~v~~i~~~~~~~~sg~l~~GD~i~evng~~v~g~~~~~~~~~l~~~~~~ 98 (1145)
.++|+-|.|.++.+.+||+||+ .+.+.-|+||||||||+++|+|+||+||+|+||||++|.++.+++++++|+++
T Consensus 120 ~~~vriv~i~k~~~eplG~Tik--~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~--- 194 (542)
T KOG0609|consen 120 VEAVRIVRIVKNTGEPLGATIR--VEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNS--- 194 (542)
T ss_pred cceeEEEEEeecCCCccceEEE--eccCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhC---
Confidence 3568999999999999999999 45555799999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCCc--cC------cccchh------------ccccCCCCchHH---------------------------
Q psy6910 99 GKTLTLRTVSSAY--VT------TDLRQF------------LNTRFPKGSVDH--------------------------- 131 (1145)
Q Consensus 99 ~~~v~~~~~p~~~--~~------~~~~~~------------~~l~f~k~~i~~--------------------------- 131 (1145)
.|+|||||+|+.. .. +.+.+| |||+|+||+|++
T Consensus 195 ~G~itfkiiP~~~~~~~~~~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiP 274 (542)
T KOG0609|consen 195 RGSITFKIIPSYRPPPQQQVVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIP 274 (542)
T ss_pred CCcEEEEEcccccCCCceeeeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCcccccccccc
Confidence 9999999999955 11 112233 999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy6910 132 -------------------------------------------------------------------------------- 131 (1145)
Q Consensus 132 -------------------------------------------------------------------------------- 131 (1145)
T Consensus 275 S~~~qerr~a~~~~~~~~~~~~~~c~~l~kkkk~~~~~y~~~~~~~~d~~~~~tYEEV~~~~~~~rrtlVLiGa~GvGr~ 354 (542)
T KOG0609|consen 275 SKELQERRVACLRREVSKEPEKTRCQRLSKKKKKKKSKYLGKHSAVFDQPELLTYEEVVRYPPFRRRTLVLIGAQGVGRR 354 (542)
T ss_pred CHHHHHHHHHHHhhhcccCCcCchhcccchhhhhhhhhhhhhcchhhhccccccHHHHhhhcccccceEEEECCcccchH
Confidence
Q ss_pred ----HHhhhhccCcceeecccccCCCCCCCcCCccEEEeCHHHHHHHHHcCCEEEEEEeCCcccCCCccchhhhhcCCCC
Q psy6910 132 ----DLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGLYEGNHYGTPKPVKEPYVSLPQN 207 (1145)
Q Consensus 132 ----~l~~~~~~~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~~~~~flE~~~~~g~~YGt~~~~i~~~~~~g~~ 207 (1145)
.|+.. +|+.|.++||||||+||++|++|++|||||+++|+++|++|+|||||||++|+|||++++|+.++++||
T Consensus 355 elk~~Li~~-~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~lE~GEy~~nlYGTs~dsVr~v~~~gK- 432 (542)
T KOG0609|consen 355 ELKNKLIEL-NPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFLEYGEYEGNLYGTSLDSVRNVIASGK- 432 (542)
T ss_pred HHHHHHHhh-CccccccCCCCcCCCCCCCCCCCccceeeehHHHhhhhhcCCceecCcchhccccchHHHHHHHHHhCC-
Confidence 23333 689999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ceeeecCCCChhhhhhhhcccccccceeEecCCChhhhhhhhhcc
Q psy6910 208 VNLLPGAHPSSEGKRKRNRSNVEAMASKSIEPDMKTNGFDNKTVN 252 (1145)
Q Consensus 208 ~~~il~~~~~~~~~~~~~~~~~~~~~~ifi~pps~~~l~~rl~~r 252 (1145)
+||||++|+..+..+..++.| + +|||+||+++++++..+.-
T Consensus 433 -icvLdv~Pqalk~lRt~Ef~P--y-VIFI~pP~~~~~r~~r~~~ 473 (542)
T KOG0609|consen 433 -ICVLDVEPQALKVLRTAEFKP--Y-VIFIAPPSLEELRALRKVA 473 (542)
T ss_pred -EEEEecCHHHhhhhhhhcccc--e-EEEecCCCchhHHHHhhhc
Confidence 999999997666655555544 4 6799999999997755543
No 4
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.9e-35 Score=296.65 Aligned_cols=146 Identities=25% Similarity=0.257 Sum_probs=139.1
Q ss_pred CCcEEEEEecCCccCcccchhccccCCCCchHHHHhhhhccCcceeecccccCCCCCCCcCCccEEEeCHHHHHHHHHcC
Q psy6910 99 GKTLTLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSG 178 (1145)
Q Consensus 99 ~~~v~~~~~p~~~~~~~~~~~~~l~f~k~~i~~~l~~~~~~~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~~~~ 178 (1145)
.|.+.+...||+++ |+||+++|++.. + +.++|++|||+||+||+||+||||||+++|+++|++|
T Consensus 3 ~G~l~vlsgPSG~G-------------KsTl~k~L~~~~--~-l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~ 66 (191)
T COG0194 3 KGLLIVLSGPSGVG-------------KSTLVKALLEDD--K-LRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERD 66 (191)
T ss_pred CceEEEEECCCCCC-------------HHHHHHHHHhhc--C-eEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcC
Confidence 68899999999997 899999999994 4 4469999999999999999999999999999999999
Q ss_pred CEEEEEEeCCcccCCCccchhhhhcCCCCceeeecCCCChhhhhhhhcccccccceeEecCCChhhhhhhhhccCCCCcc
Q psy6910 179 CLLESGLYEGNHYGTPKPVKEPYVSLPQNVNLLPGAHPSSEGKRKRNRSNVEAMASKSIEPDMKTNGFDNKTVNMGNSSD 258 (1145)
Q Consensus 179 ~flE~~~~~g~~YGt~~~~i~~~~~~g~~~~~il~~~~~~~~~~~~~~~~~~~~~~ifi~pps~~~l~~rl~~rg~~s~~ 258 (1145)
+||||.+|+||||||++..|+.++++|+ +||||||+ +|++++++.+|+++ .|||.|||+++|++||++||+|+.+
T Consensus 67 ~fLE~a~~~gnyYGT~~~~ve~~~~~G~--~vildId~--qGa~qvk~~~p~~v-~IFi~pPs~eeL~~RL~~Rgtds~e 141 (191)
T COG0194 67 EFLEWAEYHGNYYGTSREPVEQALAEGK--DVILDIDV--QGALQVKKKMPNAV-SIFILPPSLEELERRLKGRGTDSEE 141 (191)
T ss_pred CcEEEEEEcCCcccCcHHHHHHHHhcCC--eEEEEEeh--HHHHHHHHhCCCeE-EEEEcCCCHHHHHHHHHccCCCCHH
Confidence 9999999999999999999999999988 99999999 78999999999999 9999999999999999999999999
Q ss_pred cccccCC
Q psy6910 259 YELNDNN 265 (1145)
Q Consensus 259 ~i~~~~~ 265 (1145)
.|++|+.
T Consensus 142 ~I~~Rl~ 148 (191)
T COG0194 142 VIARRLE 148 (191)
T ss_pred HHHHHHH
Confidence 9999885
No 5
>KOG3580|consensus
Probab=99.97 E-value=4.7e-29 Score=278.34 Aligned_cols=433 Identities=22% Similarity=0.272 Sum_probs=238.6
Q ss_pred CccceEEEEEEecc-cceeEEEecCCCCCCc-----cEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy6910 432 LIGERIHSSLVKSL-RGLGFTIVGGDDSKEE-----FLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505 (1145)
Q Consensus 432 ~~g~~~~v~l~k~~-~glG~~i~gg~~~~~~-----~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~ 505 (1145)
+..+.++|+|.|++ .||||.|.||.|.+.. .|+|+.|+||||| +|+||.||+|+.|||++|.+.+|.-||++
T Consensus 5 ~IWEQhTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPA--eG~LQenDrvvMVNGvsMenv~haFAvQq 82 (1027)
T KOG3580|consen 5 LIWEQHTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPA--EGLLQENDRVVMVNGVSMENVLHAFAVQQ 82 (1027)
T ss_pred hhhhhheeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCc--ccccccCCeEEEEcCcchhhhHHHHHHHH
Confidence 45678999999986 5999999999997533 7999999999999 69999999999999999999999999999
Q ss_pred HhcCCCCCeEEEEEEeCCC--CCCCCCCCC-------CcceecccccC--CCC--------CCCCCcccccc--CCcCCC
Q psy6910 506 FQSISPGETVQLEVCRGYP--LPFDPNDPN-------TEVVTTVAVNA--PDL--------DNGSDRHLYMS--ANDFTD 564 (1145)
Q Consensus 506 l~~~~~g~~v~l~v~R~~~--~~~~~~~~~-------~~~~~~~~~~~--p~~--------~~~~~~~~~~s--~~~~~~ 564 (1145)
|+. .|....++|+|... +|..-.+|. ........... ... ..|+......+ +.-+..
T Consensus 83 Lrk--sgK~A~ItvkRprkvqvpa~~asPp~s~~~r~~~ded~~d~Rs~rsg~~~r~~~~s~~grsrsw~~~~er~rP~~ 160 (1027)
T KOG3580|consen 83 LRK--SGKVAAITVKRPRKVQVPALQASPPLSQDDRAFEDEDEFDGRSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHE 160 (1027)
T ss_pred HHh--hccceeEEecccceeeccccCCCCCCCCccccccchhccCcccccccccccccccccCCcccccccccccCCccc
Confidence 999 68889999988632 332222220 00000000000 000 00000000000 000000
Q ss_pred CCCCCCCC-----CCCcccccccCCCCCccccc-cCCccEEEEEEecCCC--CcceEEeccCCcceEEEeec---ccccC
Q psy6910 565 QSVKSMPD-----LYTSEKMVKLERPSSTDLIL-ESDSEYLTIPIVKGAM--GFGFTIADSSHGQKVKKILD---RQRCK 633 (1145)
Q Consensus 565 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~l~k~~~--glG~~i~~~~~g~~V~~i~~---a~~~g 633 (1145)
..-...-. ..+.+......++-... +. .-.+..+.|.|+|... -+|+.|. .-++||.|.. |+++|
T Consensus 161 R~rsrer~ls~~~~gprs~~r~~~ss~~~~-p~p~~~~~p~kv~LvKsR~nEEyGlrLg---SqIFvKeit~~gLAardg 236 (1027)
T KOG3580|consen 161 RARSRERDLSRDRRGPRSRSREHPSSRSPS-PEPRGRPGPIKVLLVKSRANEEYGLRLG---SQIFVKEITRTGLAARDG 236 (1027)
T ss_pred cccccccccccCCCCCcccccccccCCCCC-CCccCCCCcceEEEEeeccchhhccccc---chhhhhhhcccchhhccC
Confidence 00000000 00011111111111100 00 0123336788887543 5777774 3467888887 99999
Q ss_pred CCCCCCEEEEECCEecCCCCHHHHHHHHhcCCCCceEEEEEEcCCCCCCCCCCCCCCCCCCcccCCCchhc--ccCCCCC
Q psy6910 634 NLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKTPTEMYTRPKEIV--ARRPKTP 711 (1145)
Q Consensus 634 ~L~~GD~Il~INg~~v~~~s~~ea~~~Lk~~~~g~~v~L~v~R~~~~~p~~~~~~~~~~p~~~~~~~~~~~--~~~~~~p 711 (1145)
+|++||+||.|||+..+||++.+|..++.+.. ..+.|+|+|+...+-.+.|. .....+....-+++. ..+..+|
T Consensus 237 nlqEGDiiLkINGtvteNmSLtDar~LIEkS~--GKL~lvVlRD~~qtLiNiP~--l~d~dSe~~disEi~tms~rs~sp 312 (1027)
T KOG3580|consen 237 NLQEGDIILKINGTVTENMSLTDARKLIEKSR--GKLQLVVLRDSQQTLINIPS--LNDSDSEIEDISEIETMSDRSFSP 312 (1027)
T ss_pred CcccccEEEEECcEeeccccchhHHHHHHhcc--CceEEEEEecCCceeeecCC--CccccccccchhhhhccccccCCC
Confidence 99999999999999999999999999999863 57999999997654333222 111111111011111 1111111
Q ss_pred ccc-ccCCCC---CCCCCCccccccccccccccccCcCCCCCCCCCcccCCCCCCccccCCccccc------ccccCCCC
Q psy6910 712 LVD-TRSRSK---TPTENYSEYYINKELKDLDINKNIWDPQTTNPGFMQSNYSDSMSYCGGYNVYQ------VNKRKEST 781 (1145)
Q Consensus 712 ~~~-~~~~s~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~p~s~~~~~p~~~~~------~~~~~s~~ 781 (1145)
... ....+. ++.+.++..+..++ ++.. + ++.. .. .+.|....+ ++.+.-..
T Consensus 313 p~rrs~~~s~d~~s~s~h~p~~Ps~r~--~~~~-R---~s~~-----------ga--t~tPvks~~d~~~~~V~e~t~e~ 373 (1027)
T KOG3580|consen 313 PERRSQYSSYDYHSSSEHLPERPSSRE--DTPS-R---LSRM-----------GA--TPTPVKSTGDIAGTVVPETTKEP 373 (1027)
T ss_pred chhhhhccCccccCchhcCCCCCCccc--cchh-h---cccC-----------CC--CCCCccCccccCCccccccccCc
Confidence 111 100010 01111111111000 0000 0 0000 00 000100000 00000000
Q ss_pred ccccCCCCCCCCCCCCCCC-CCCCC-CCCCCCCCCcccceEEEEEEeecCCcccEEEccCCccCCceEEEEeCCCChhhh
Q psy6910 782 SFEHEQPLPSNDMRYIPPD-NLGLP-RVRPTNIKSVEYSDVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADL 859 (1145)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~v~~L~k~~~glGf~l~gg~~~~~~i~V~~V~pgs~A~~ 859 (1145)
.+...+++|-+... ++ +.... .......-.+..+-+. .+++.++|++++||+ +.||||..|..|+||+.
T Consensus 374 ~~~q~p~lP~pk~~---~~~~~~pS~~~m~~ygysP~tk~Vr----F~KGdSvGLRLAGGN--DVGIFVaGvqegspA~~ 444 (1027)
T KOG3580|consen 374 RYQQEPPLPQPKAA---PRTFLRPSPEDMAIYGYSPNTKMVR----FKKGDSVGLRLAGGN--DVGIFVAGVQEGSPAEQ 444 (1027)
T ss_pred ccccCCCCCCcccC---cceeeecCHHHHHHhcCCCCceeEE----eecCCeeeeEeccCC--ceeEEEeecccCCchhh
Confidence 11111111111100 00 00000 0000001112222222 255889999999997 78999999999999999
Q ss_pred cCCCCCCCEEEEECCEecCCCCHHHHHHHHHhccCCCeEEEEEeec
Q psy6910 860 DGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRK 905 (1145)
Q Consensus 860 ~G~L~~GD~IlsVNG~~v~~~s~~~~~~~L~~~~~~~~v~L~v~r~ 905 (1145)
.| |+.||+|+.||.++..++..++++.+|...+++..|+|.-.++
T Consensus 445 eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~k 489 (1027)
T KOG3580|consen 445 EG-LQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQSK 489 (1027)
T ss_pred cc-ccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhhh
Confidence 99 9999999999999999999999999999999988898876554
No 6
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.96 E-value=3.7e-30 Score=269.81 Aligned_cols=148 Identities=23% Similarity=0.244 Sum_probs=136.9
Q ss_pred CCcEEEEEecCCccCcccchhccccCCCCchHHHHhhhhccCcceeecccccCCCCCCCcCCccEEEeCHHHHHHHHHcC
Q psy6910 99 GKTLTLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSG 178 (1145)
Q Consensus 99 ~~~v~~~~~p~~~~~~~~~~~~~l~f~k~~i~~~l~~~~~~~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~~~~ 178 (1145)
.+.+.+.++|+|++ |++|++.|++.+ |+++ ++++||||+||+||+||+||||||+++|++++++|
T Consensus 3 ~~~~ivl~GpsG~G-------------K~tl~~~l~~~~-~~~~-~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~ 67 (186)
T PRK14737 3 SPKLFIISSVAGGG-------------KSTIIQALLEEH-PDFL-FSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADG 67 (186)
T ss_pred CCeEEEEECCCCCC-------------HHHHHHHHHhcC-Cccc-cccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcC
Confidence 67888999999997 889999999985 6665 58999999999999999999999999999999999
Q ss_pred CEEEEEEeCCcccCCCccchhhhhcCCCCceeeecCCCChhhhhhhhcccccc-cceeEecCCChhhhhhhhhccCCCCc
Q psy6910 179 CLLESGLYEGNHYGTPKPVKEPYVSLPQNVNLLPGAHPSSEGKRKRNRSNVEA-MASKSIEPDMKTNGFDNKTVNMGNSS 257 (1145)
Q Consensus 179 ~flE~~~~~g~~YGt~~~~i~~~~~~g~~~~~il~~~~~~~~~~~~~~~~~~~-~~~ifi~pps~~~l~~rl~~rg~~s~ 257 (1145)
+|+||++|+||+|||++++|+.++++|+ +||+|+++ ++++.+++.+++. + +|||.|||.+++++||.+|+.++.
T Consensus 68 ~f~e~~~~~g~~YGt~~~~i~~~~~~g~--~~i~d~~~--~g~~~l~~~~~~~~~-~Ifi~pps~e~l~~RL~~R~~~s~ 142 (186)
T PRK14737 68 EFLEWAEVHDNYYGTPKAFIEDAFKEGR--SAIMDIDV--QGAKIIKEKFPERIV-TIFIEPPSEEEWEERLIHRGTDSE 142 (186)
T ss_pred CeEEEEEECCeeecCcHHHHHHHHHcCC--eEEEEcCH--HHHHHHHHhCCCCeE-EEEEECCCHHHHHHHHHhcCCCCH
Confidence 9999999999999999999999999988 99999876 7888899988886 6 899999999999999999999999
Q ss_pred ccccccCCC
Q psy6910 258 DYELNDNNG 266 (1145)
Q Consensus 258 ~~i~~~~~~ 266 (1145)
++|++|+..
T Consensus 143 e~i~~Rl~~ 151 (186)
T PRK14737 143 ESIEKRIEN 151 (186)
T ss_pred HHHHHHHHH
Confidence 999988853
No 7
>PLN02772 guanylate kinase
Probab=99.94 E-value=2.7e-27 Score=267.06 Aligned_cols=149 Identities=21% Similarity=0.195 Sum_probs=136.5
Q ss_pred CCcEEEEEecCCccCcccchhccccCCCCchHHHHhhhhccCcceeecccccCCCCCCCcCCccEEEeCHHHHHHHHHcC
Q psy6910 99 GKTLTLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSG 178 (1145)
Q Consensus 99 ~~~v~~~~~p~~~~~~~~~~~~~l~f~k~~i~~~l~~~~~~~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~~~~ 178 (1145)
...+.+.+.||++. |++|++.|++.+ +..|.++++||||+||++|++|+||||+++++|++++++|
T Consensus 134 ~~k~iVlsGPSGvG-------------KsTL~~~L~~~~-p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g 199 (398)
T PLN02772 134 AEKPIVISGPSGVG-------------KGTLISMLMKEF-PSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDG 199 (398)
T ss_pred CCcEEEEECCCCCC-------------HHHHHHHHhhhc-cccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhC
Confidence 34577777888886 889999999885 5668889999999999999999999999999999999999
Q ss_pred CEEEEEEeCCcccCCCccchhhhhcCCCCceeeecCCCChhhhhhhhcccccccceeEecCCChhhhhhhhhccCCCCcc
Q psy6910 179 CLLESGLYEGNHYGTPKPVKEPYVSLPQNVNLLPGAHPSSEGKRKRNRSNVEAMASKSIEPDMKTNGFDNKTVNMGNSSD 258 (1145)
Q Consensus 179 ~flE~~~~~g~~YGt~~~~i~~~~~~g~~~~~il~~~~~~~~~~~~~~~~~~~~~~ifi~pps~~~l~~rl~~rg~~s~~ 258 (1145)
+|+||++|+||||||++++|+.++++|+ +||||+|+ ++++.+++.+++++ +|||.||++++|++||+.||+++++
T Consensus 200 ~FlE~~e~~Gn~YGTsk~~V~~vl~~Gk--~vILdLD~--qGar~Lr~~~l~~v-~IFI~PPSlEeLe~RL~~RGteseE 274 (398)
T PLN02772 200 KFLEFASVHGNLYGTSIEAVEVVTDSGK--RCILDIDV--QGARSVRASSLEAI-FIFICPPSMEELEKRLRARGTETEE 274 (398)
T ss_pred ccceeeeecCccccccHHHHHHHHHhCC--cEEEeCCH--HHHHHHHHhcCCeE-EEEEeCCCHHHHHHHHHhcCCCCHH
Confidence 9999999999999999999999999987 99999888 67788888878888 9999999999999999999999999
Q ss_pred cccccCCC
Q psy6910 259 YELNDNNG 266 (1145)
Q Consensus 259 ~i~~~~~~ 266 (1145)
+|++|+..
T Consensus 275 ~I~kRL~~ 282 (398)
T PLN02772 275 QIQKRLRN 282 (398)
T ss_pred HHHHHHHH
Confidence 99999864
No 8
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.93 E-value=1.6e-26 Score=243.34 Aligned_cols=148 Identities=28% Similarity=0.358 Sum_probs=137.2
Q ss_pred CcEEEEEecCCccCcccchhccccCCCCchHHHHhhhhccCcceeecccccCCCCCCCcCCccEEEeCHHHHHHHHHcCC
Q psy6910 100 KTLTLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGC 179 (1145)
Q Consensus 100 ~~v~~~~~p~~~~~~~~~~~~~l~f~k~~i~~~l~~~~~~~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~~~~~ 179 (1145)
+.+.+.++|++++ |++|.+.|++.+ |+.|.++++||||+||+||++|+||||||+++|++++++|+
T Consensus 2 ~r~ivl~Gpsg~G-------------K~tl~~~L~~~~-~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~ 67 (184)
T smart00072 2 RRPIVLSGPSGVG-------------KGTLLAELIQEI-PDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGL 67 (184)
T ss_pred CcEEEEECCCCCC-------------HHHHHHHHHhcC-CcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCC
Confidence 4577888999886 889999999995 66788899999999999999999999999999999999999
Q ss_pred EEEEEEeCCcccCCCccchhhhhcCCCCceeeecCCCChhhhhhhhcccccccceeEecCCChhhhhhhhhccCCCCccc
Q psy6910 180 LLESGLYEGNHYGTPKPVKEPYVSLPQNVNLLPGAHPSSEGKRKRNRSNVEAMASKSIEPDMKTNGFDNKTVNMGNSSDY 259 (1145)
Q Consensus 180 flE~~~~~g~~YGt~~~~i~~~~~~g~~~~~il~~~~~~~~~~~~~~~~~~~~~~ifi~pps~~~l~~rl~~rg~~s~~~ 259 (1145)
|+||++|+||+|||++++|+.++++|+ +||+|+++ +++.++++.+++++ +|||.||+.++|++||..|++++.+.
T Consensus 68 fve~~~~~g~~YGt~~~~i~~~~~~~~--~~ild~~~--~~~~~l~~~~~~~~-vIfi~~~s~~~l~~rl~~R~~~~~~~ 142 (184)
T smart00072 68 FLEWGEYSGNYYGTSKETIRQVAEQGK--HCLLDIDP--QGVKQLRKAQLYPI-VIFIAPPSSEELERRLRGRGTETAER 142 (184)
T ss_pred eEEEEEEcCcCcccCHHHHHHHHHcCC--eEEEEECH--HHHHHHHHhCCCcE-EEEEeCcCHHHHHHHHHhcCCCCHHH
Confidence 999999999999999999999999977 99999886 78888888888988 99999999999999999999999999
Q ss_pred ccccCCC
Q psy6910 260 ELNDNNG 266 (1145)
Q Consensus 260 i~~~~~~ 266 (1145)
|++|+..
T Consensus 143 i~~rl~~ 149 (184)
T smart00072 143 IQKRLAA 149 (184)
T ss_pred HHHHHHH
Confidence 9988853
No 9
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.93 E-value=5.9e-27 Score=246.61 Aligned_cols=146 Identities=26% Similarity=0.362 Sum_probs=130.9
Q ss_pred CcEEEEEecCCccCcccchhccccCCCCchHHHHhhhhccCcceeecccccCCCCCCCcCCccEEEeCHHHHHHHHHcCC
Q psy6910 100 KTLTLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGC 179 (1145)
Q Consensus 100 ~~v~~~~~p~~~~~~~~~~~~~l~f~k~~i~~~l~~~~~~~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~~~~~ 179 (1145)
+.+.+.++|++++ |++|.+.|++.+ |+.|.++++||||+||+||++|+||||||+++|++|+++|+
T Consensus 2 ~r~ivl~Gpsg~G-------------K~~l~~~L~~~~-~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~ 67 (183)
T PF00625_consen 2 RRPIVLVGPSGSG-------------KSTLAKRLIQEF-PDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGE 67 (183)
T ss_dssp SSEEEEESSTTSS-------------HHHHHHHHHHHS-TTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTH
T ss_pred CCEEEEECCCCCC-------------HHHHHHHHHHhc-ccccccceeecccCCcccccCCcceEEEeechhhhhhcccc
Confidence 5677889998886 889999999995 78888999999999999999999999999999999999999
Q ss_pred EEEEEEeCCcccCCCccchhhhhcCCCCceeeecCCCChhhhhhhhcccccccceeEecCCChhhhhhhhhccCCCCccc
Q psy6910 180 LLESGLYEGNHYGTPKPVKEPYVSLPQNVNLLPGAHPSSEGKRKRNRSNVEAMASKSIEPDMKTNGFDNKTVNMGNSSDY 259 (1145)
Q Consensus 180 flE~~~~~g~~YGt~~~~i~~~~~~g~~~~~il~~~~~~~~~~~~~~~~~~~~~~ifi~pps~~~l~~rl~~rg~~s~~~ 259 (1145)
|+||++|+|++|||++++|+.++++|+ +|||++++ +++..+++...+++ +|||.||+.++|++||+.|+.++.+.
T Consensus 68 fie~~~~~g~~YGt~~~~i~~~~~~gk--~~il~~~~--~g~~~L~~~~~~~~-~IfI~~~s~~~l~~~l~~r~~~~~~~ 142 (183)
T PF00625_consen 68 FIEYGEYDGNYYGTSKSAIDKVLEEGK--HCILDVDP--EGVKQLKKAGFNPI-VIFIKPPSPEVLKRRLRRRGDESEEE 142 (183)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHTTT--EEEEEETH--HHHHHHHHCTTTEE-EEEEEESSHHHHHHHHHTTTHCHHHH
T ss_pred EEEEeeecchhhhhccchhhHhhhcCC--cEEEEccH--HHHHHHHhcccCce-EEEEEccchHHHHHHHhccccccHHH
Confidence 999999999999999999999999988 99999875 78888988888888 99999999999999999999888888
Q ss_pred ccccC
Q psy6910 260 ELNDN 264 (1145)
Q Consensus 260 i~~~~ 264 (1145)
|.+|+
T Consensus 143 i~~r~ 147 (183)
T PF00625_consen 143 IEERL 147 (183)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88665
No 10
>KOG3580|consensus
Probab=99.90 E-value=9.8e-23 Score=228.18 Aligned_cols=293 Identities=27% Similarity=0.423 Sum_probs=216.2
Q ss_pred cccceEEEEEEeec-CCcccEEEccCCcc------CCceEEEEeCCCChhhhcCCCCCCCEEEEECCEecCCCCHHHHHH
Q psy6910 815 VEYSDVMVITLLRQ-ENGFGFRIVGGTEE------GSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVE 887 (1145)
Q Consensus 815 ~~~~~~~v~~L~k~-~~glGf~l~gg~~~------~~~i~V~~V~pgs~A~~~G~L~~GD~IlsVNG~~v~~~s~~~~~~ 887 (1145)
..|+..++ +|.|+ ..|||+.|.||.+. ...++|..|.|||||+ |+||.+|+|+-|||.+++++.|.-+++
T Consensus 5 ~IWEQhTv-TL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAvQ 81 (1027)
T KOG3580|consen 5 LIWEQHTV-TLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAVQ 81 (1027)
T ss_pred hhhhhhee-eeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHHH
Confidence 45888899 99999 88999999998874 2369999999999997 889999999999999999999999999
Q ss_pred HHHhccCCCeEEEEEeeccCCC----Cc--c----------------------------------cc-------------
Q psy6910 888 LMGKASVYGRVTLGIRRKVMPP----AE--T----------------------------------TS------------- 914 (1145)
Q Consensus 888 ~L~~~~~~~~v~L~v~r~~~~~----~~--~----------------------------------~~------------- 914 (1145)
.|+++++...+++...|+.... .+ + ++
T Consensus 82 qLrksgK~A~ItvkRprkvqvpa~~asPp~s~~~r~~~ded~~d~Rs~rsg~~~r~~~~s~~grsrsw~~~~er~rP~~R 161 (1027)
T KOG3580|consen 82 QLRKSGKVAAITVKRPRKVQVPALQASPPLSQDDRAFEDEDEFDGRSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHER 161 (1027)
T ss_pred HHHhhccceeEEecccceeeccccCCCCCCCCccccccchhccCcccccccccccccccccCCcccccccccccCCcccc
Confidence 9999986544444333322111 00 0 00
Q ss_pred ---------------------------c-----CCCCCeEEEEec-cCCCcccEEEeecCCCCCceEEEeCCCCcccccC
Q psy6910 915 ---------------------------M-----MLGYPYDVTITR-RENEGFGFVIISSLNKAGSTIGRIIEDSPADRSG 961 (1145)
Q Consensus 915 ---------------------------~-----~~~~~~~V~l~r-~~~~~lG~~l~~~~~~~g~~I~~v~~gs~A~~~G 961 (1145)
+ ....+..|.|.+ ..++.+|+.+.+ -+||+.|...+.|++.|
T Consensus 162 ~rsrer~ls~~~~gprs~~r~~~ss~~~~p~p~~~~~p~kv~LvKsR~nEEyGlrLgS-----qIFvKeit~~gLAardg 236 (1027)
T KOG3580|consen 162 ARSRERDLSRDRRGPRSRSREHPSSRSPSPEPRGRPGPIKVLLVKSRANEEYGLRLGS-----QIFVKEITRTGLAARDG 236 (1027)
T ss_pred ccccccccccCCCCCcccccccccCCCCCCCccCCCCcceEEEEeeccchhhcccccc-----hhhhhhhcccchhhccC
Confidence 0 011234555554 347788887743 78999999999999999
Q ss_pred CCCCCCEEEEECCeeecccCHHHHHHHHHcCCCEEEEEEeCCCCC---------C-CCC----------CCcccC-----
Q psy6910 962 ELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISG---------D-DAS----------STTSVS----- 1016 (1145)
Q Consensus 962 ~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~L~v~r~~~~---------~-~~~----------~~~s~~----- 1016 (1145)
.|+.||+||+|||+...+++..++..+|..+...+.|+|.|.... . .++ +..+.+
T Consensus 237 nlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~qtLiNiP~l~d~dSe~~disEi~tms~rs~spp~rr 316 (1027)
T KOG3580|consen 237 NLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQTLINIPSLNDSDSEIEDISEIETMSDRSFSPPERR 316 (1027)
T ss_pred CcccccEEEEECcEeeccccchhHHHHHHhccCceEEEEEecCCceeeecCCCccccccccchhhhhccccccCCCchhh
Confidence 999999999999999999999999999999888888888653211 0 000 000000
Q ss_pred ----------ccCCC--------------------CCC---------------------------CC-------------
Q psy6910 1017 ----------AASHR--------------------EYE---------------------------EG------------- 1026 (1145)
Q Consensus 1017 ----------~~~~~--------------------~~p---------------------------~~------------- 1026 (1145)
+..|. +.| +.
T Consensus 317 s~~~s~d~~s~s~h~p~~Ps~r~~~~~R~s~~gat~tPvks~~d~~~~~V~e~t~e~~~~q~p~lP~pk~~~~~~~~pS~ 396 (1027)
T KOG3580|consen 317 SQYSSYDYHSSSEHLPERPSSREDTPSRLSRMGATPTPVKSTGDIAGTVVPETTKEPRYQQEPPLPQPKAAPRTFLRPSP 396 (1027)
T ss_pred hhccCccccCchhcCCCCCCccccchhhcccCCCCCCCccCccccCCccccccccCcccccCCCCCCcccCcceeeecCH
Confidence 00000 000 00
Q ss_pred -----CCCCcccEEEEeecCCcceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy6910 1027 -----GEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIE 1101 (1145)
Q Consensus 1027 -----~~~~~~~~~v~l~k~~~~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~ 1101 (1145)
....+..+.|.+.|+ ...|+.|.||. +.||||..|..|++|++.| |+.||+||+||.+++.++..++||.
T Consensus 397 ~~m~~ygysP~tk~VrF~KG-dSvGLRLAGGN---DVGIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVl 471 (1027)
T KOG3580|consen 397 EDMAIYGYSPNTKMVRFKKG-DSVGLRLAGGN---DVGIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVL 471 (1027)
T ss_pred HHHHHhcCCCCceeEEeecC-CeeeeEeccCC---ceeEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHH
Confidence 011244556666555 67899999987 4599999999999999999 9999999999999999999999999
Q ss_pred HHHcC--CCeEEEEEEeCCCc
Q psy6910 1102 IIRNG--DSTVRLLIKRGGSV 1120 (1145)
Q Consensus 1102 ~lk~~--~~~v~L~v~R~~~~ 1120 (1145)
.|-.- |..|+|+.++..++
T Consensus 472 fLL~lPkGEevtilaQ~k~Dv 492 (1027)
T KOG3580|consen 472 FLLELPKGEEVTILAQSKADV 492 (1027)
T ss_pred HHhcCCCCcEEeehhhhhhHH
Confidence 99874 45688876654443
No 11
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.88 E-value=4.5e-23 Score=220.80 Aligned_cols=147 Identities=23% Similarity=0.237 Sum_probs=133.2
Q ss_pred CCcEEEEEecCCccCcccchhccccCCCCchHHHHhhhhccCcceeecccccCCCCCCCcCCccEEEeCHHHHHHHHHcC
Q psy6910 99 GKTLTLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSG 178 (1145)
Q Consensus 99 ~~~v~~~~~p~~~~~~~~~~~~~l~f~k~~i~~~l~~~~~~~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~~~~ 178 (1145)
.+.+.+.++|++.+ |++|++.|.+.. + .|.++++||||+||++|++|++|||||+++|++++.+|
T Consensus 12 ~~~~ivi~GpsG~G-------------K~tl~~~L~~~~-~-~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~ 76 (206)
T PRK14738 12 KPLLVVISGPSGVG-------------KDAVLARMRERK-L-PFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQN 76 (206)
T ss_pred CCeEEEEECcCCCC-------------HHHHHHHHHhcC-C-cccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcC
Confidence 56777788999986 889999998763 3 46679999999999999999999999999999999999
Q ss_pred CEEEEEEeCCcccCCCccchhhhhcCCCCceeeecCCCChhhhhhhhcccccccceeEecCCChhhhhhhhhccCCCCcc
Q psy6910 179 CLLESGLYEGNHYGTPKPVKEPYVSLPQNVNLLPGAHPSSEGKRKRNRSNVEAMASKSIEPDMKTNGFDNKTVNMGNSSD 258 (1145)
Q Consensus 179 ~flE~~~~~g~~YGt~~~~i~~~~~~g~~~~~il~~~~~~~~~~~~~~~~~~~~~~ifi~pps~~~l~~rl~~rg~~s~~ 258 (1145)
+|+||++++||+|||++++|+.++++|+ +||++++. +++..+++.+|+.+ +||+.||+.+++++||.+|+.++.+
T Consensus 77 ~~le~~~~~g~~YGt~~~~i~~~~~~g~--~vi~~~~~--~g~~~l~~~~pd~~-~if~~pps~e~l~~Rl~~R~~~~~~ 151 (206)
T PRK14738 77 ELLEWAEVYGNYYGVPKAPVRQALASGR--DVIVKVDV--QGAASIKRLVPEAV-FIFLAPPSMDELTRRLELRRTESPE 151 (206)
T ss_pred CcEEEEEEcCceecCCHHHHHHHHHcCC--cEEEEcCH--HHHHHHHHhCCCeE-EEEEeCCCHHHHHHHHHHcCCCCHH
Confidence 9999999999999999999999999987 99998776 67888889999988 9999999999999999999988888
Q ss_pred cccccCC
Q psy6910 259 YELNDNN 265 (1145)
Q Consensus 259 ~i~~~~~ 265 (1145)
.+.+|+.
T Consensus 152 ~~~~Rl~ 158 (206)
T PRK14738 152 ELERRLA 158 (206)
T ss_pred HHHHHHH
Confidence 8887764
No 12
>KOG0707|consensus
Probab=99.88 E-value=2.3e-23 Score=216.29 Aligned_cols=135 Identities=21% Similarity=0.288 Sum_probs=126.8
Q ss_pred CCCchHHHHhhhhccCcceeecccccCCCCCCCcCCccEEEeCHHHHHHHHHcCCEEEEEEeCCcccCCCccchhhhhcC
Q psy6910 125 PKGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGLYEGNHYGTPKPVKEPYVSL 204 (1145)
Q Consensus 125 ~k~~i~~~l~~~~~~~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~~~~~flE~~~~~g~~YGt~~~~i~~~~~~ 204 (1145)
.|+++++.|++.+ +..|.++|+||||.||.+|++|+||||+++++|+.|+++++|+||+.+.||+|||+++++++....
T Consensus 49 gk~tll~~l~ee~-~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yGtsi~av~~~~~~ 127 (231)
T KOG0707|consen 49 GKSTLLKRLREEL-GGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYGTSIAAVQRLMLS 127 (231)
T ss_pred chhHHHHHHHHHc-CCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCCchHHHHHHHHhc
Confidence 3889999999995 778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeecCCCChhhhhhhhcccccccceeEecCCChhhhhhhhhccCCCCcccccccCC
Q psy6910 205 PQNVNLLPGAHPSSEGKRKRNRSNVEAMASKSIEPDMKTNGFDNKTVNMGNSSDYELNDNN 265 (1145)
Q Consensus 205 g~~~~~il~~~~~~~~~~~~~~~~~~~~~~ifi~pps~~~l~~rl~~rg~~s~~~i~~~~~ 265 (1145)
|+ .|++|||. ++++.++....+++ +||+.||+..++++||+.||+|+.+++.+|+.
T Consensus 128 gk--~~ildId~--qg~~~i~~~~~~~i-~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~ 183 (231)
T KOG0707|consen 128 GK--VCILDIDL--QGVQPIRATSLDAI-YIFIKPPSIKILEERLRARGTETEESLLKRLK 183 (231)
T ss_pred CC--cceeehhh--cCceeeecCCCceE-EEEecCCcchhHHHHhhccCcchHHHHHHHHH
Confidence 88 99999888 56777777788999 99999999999999999999999999999886
No 13
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.75 E-value=2.5e-18 Score=171.82 Aligned_cols=119 Identities=33% Similarity=0.432 Sum_probs=108.7
Q ss_pred EEEEecCCccCcccchhccccCCCCchHHHHhhhhccCcceeecccccCCCCCCCcCCccEEEeCHHHHHHHHHcCCEEE
Q psy6910 103 TLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLE 182 (1145)
Q Consensus 103 ~~~~~p~~~~~~~~~~~~~l~f~k~~i~~~l~~~~~~~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~~~~~flE 182 (1145)
.+.++|++.+ |+++++.|.+.+ +..|...++||||+||.+|.+|++|+|+++++|.+++.+++|+|
T Consensus 2 i~i~GpsGsG-------------Kstl~~~L~~~~-~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e 67 (137)
T cd00071 2 IVLSGPSGVG-------------KSTLLKRLLEEF-DPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLE 67 (137)
T ss_pred EEEECCCCCC-------------HHHHHHHHHhcC-CccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEE
Confidence 4556787775 889999999886 44577799999999999999999999999999999999999999
Q ss_pred EEEeCCcccCCCccchhhhhcCCCCceeeecCCCChhhhhhhhcccccccceeEecCC
Q psy6910 183 SGLYEGNHYGTPKPVKEPYVSLPQNVNLLPGAHPSSEGKRKRNRSNVEAMASKSIEPD 240 (1145)
Q Consensus 183 ~~~~~g~~YGt~~~~i~~~~~~g~~~~~il~~~~~~~~~~~~~~~~~~~~~~ifi~pp 240 (1145)
|++|+||+||+++++|++++++|+ +||+|++. +++.++++.++++. +|||.||
T Consensus 68 ~~~~~~~~yg~~~~~i~~~~~~g~--~~il~~~~--~~~~~l~~~~~~~~-~I~i~~~ 120 (137)
T cd00071 68 WAEFHGNYYGTSKAAVEEALAEGK--IVILEIDV--QGARQVKKSYPDAV-SIFILPP 120 (137)
T ss_pred EEEEcCEEecCcHHHHHHHHhCCC--eEEEEecH--HHHHHHHHcCCCeE-EEEEECC
Confidence 999999999999999999999988 99999665 88899999999999 9999999
No 14
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.72 E-value=1.4e-17 Score=178.73 Aligned_cols=150 Identities=26% Similarity=0.258 Sum_probs=136.1
Q ss_pred cCCCCcEEEEEecCCccCcccchhccccCCCCchHHHHhhhhccCcceeecccccCCCCCCCcCCccEEEeCHHHHHHHH
Q psy6910 96 CRSGKTLTLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLE 175 (1145)
Q Consensus 96 ~~~~~~v~~~~~p~~~~~~~~~~~~~l~f~k~~i~~~l~~~~~~~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~ 175 (1145)
|.+.|.+.+.++|++++ |+++++.|...+ + .|.+.+++|||+|+.||++|.+|+|++.++|.+++
T Consensus 1 ~~~~g~~i~i~G~sGsG-------------Kstl~~~l~~~~-~-~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~ 65 (205)
T PRK00300 1 MMRRGLLIVLSGPSGAG-------------KSTLVKALLERD-P-NLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMI 65 (205)
T ss_pred CCCCCCEEEEECCCCCC-------------HHHHHHHHHhhC-c-cceeccCccccCCCCCCcCCCeeEEcCHHHHHHHH
Confidence 55689999999999996 889998888885 3 45569999999999999999999999999999999
Q ss_pred HcCCEEEEEEeCCcccCCCccchhhhhcCCCCceeeecCCCChhhhhhhhcccccccceeEecCCChhhhhhhhhccCCC
Q psy6910 176 KSGCLLESGLYEGNHYGTPKPVKEPYVSLPQNVNLLPGAHPSSEGKRKRNRSNVEAMASKSIEPDMKTNGFDNKTVNMGN 255 (1145)
Q Consensus 176 ~~~~flE~~~~~g~~YGt~~~~i~~~~~~g~~~~~il~~~~~~~~~~~~~~~~~~~~~~ifi~pps~~~l~~rl~~rg~~ 255 (1145)
.+++|++++++.+++||++...|+.++++|+ +||+|+++ .+...+++.+++.. +||+.+++.+++++|+..|+.+
T Consensus 66 ~~~~~~~~~~~~~~~y~~~~~~i~~~l~~g~--~vi~dl~~--~g~~~l~~~~~~~~-~I~i~~~s~~~l~~Rl~~R~~~ 140 (205)
T PRK00300 66 ENGEFLEWAEVFGNYYGTPRSPVEEALAAGK--DVLLEIDW--QGARQVKKKMPDAV-SIFILPPSLEELERRLRGRGTD 140 (205)
T ss_pred HcCCcEEEEEECCccccCcHHHHHHHHHcCC--eEEEeCCH--HHHHHHHHhCCCcE-EEEEECcCHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999977 99999877 66778888888777 8999999999999999999999
Q ss_pred CcccccccCC
Q psy6910 256 SSDYELNDNN 265 (1145)
Q Consensus 256 s~~~i~~~~~ 265 (1145)
+.+.+++|+.
T Consensus 141 ~~~~i~~rl~ 150 (205)
T PRK00300 141 SEEVIARRLA 150 (205)
T ss_pred CHHHHHHHHH
Confidence 9999998774
No 15
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.70 E-value=3.9e-17 Score=171.58 Aligned_cols=146 Identities=28% Similarity=0.307 Sum_probs=131.1
Q ss_pred CcEEEEEecCCccCcccchhccccCCCCchHHHHhhhhccCcceeecccccCCCCCCCcCCccEEEeCHHHHHHHHHcCC
Q psy6910 100 KTLTLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGC 179 (1145)
Q Consensus 100 ~~v~~~~~p~~~~~~~~~~~~~l~f~k~~i~~~l~~~~~~~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~~~~~ 179 (1145)
|.+.+.++|++++ |+++++.|.+.+ +..+ ..+++|||+|+.||.+|++|+|++.++|.+++..++
T Consensus 1 g~ii~l~G~~GsG-------------KsTl~~~L~~~~-~~~~-~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 65 (180)
T TIGR03263 1 GLLIVISGPSGVG-------------KSTLVKALLEED-PNLK-FSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGE 65 (180)
T ss_pred CcEEEEECCCCCC-------------HHHHHHHHHccC-cccc-ccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCC
Confidence 5688889999886 889999998875 4544 589999999999999999999999999999999999
Q ss_pred EEEEEEeCCcccCCCccchhhhhcCCCCceeeecCCCChhhhhhhhcccccccceeEecCCChhhhhhhhhccCCCCccc
Q psy6910 180 LLESGLYEGNHYGTPKPVKEPYVSLPQNVNLLPGAHPSSEGKRKRNRSNVEAMASKSIEPDMKTNGFDNKTVNMGNSSDY 259 (1145)
Q Consensus 180 flE~~~~~g~~YGt~~~~i~~~~~~g~~~~~il~~~~~~~~~~~~~~~~~~~~~~ifi~pps~~~l~~rl~~rg~~s~~~ 259 (1145)
|++++++.+++||++++.|+.++++|+ +||+|++. .+...+++.++++. .||+.+|+.+++++||+.|+.++.++
T Consensus 66 ~~~~~~~~~~~y~~~~~~i~~~~~~g~--~vi~d~~~--~~~~~~~~~~~~~~-~i~~~~~~~e~~~~Rl~~r~~~~~~~ 140 (180)
T TIGR03263 66 FLEWAEVHGNYYGTPKSPVEEALAAGK--DVLLEIDV--QGARQVKKKFPDAV-SIFILPPSLEELERRLRKRGTDSEEV 140 (180)
T ss_pred cEEEEEECCeeeCCcHHHHHHHHHCCC--eEEEECCH--HHHHHHHHhCCCcE-EEEEECCCHHHHHHHHHHcCCCCHHH
Confidence 999999999999999999999999977 99999765 67777888887777 89999999999999999999999999
Q ss_pred ccccCC
Q psy6910 260 ELNDNN 265 (1145)
Q Consensus 260 i~~~~~ 265 (1145)
|++|+.
T Consensus 141 i~~rl~ 146 (180)
T TIGR03263 141 IERRLA 146 (180)
T ss_pred HHHHHH
Confidence 998774
No 16
>KOG1891|consensus
Probab=99.59 E-value=9.5e-16 Score=154.29 Aligned_cols=78 Identities=40% Similarity=0.801 Sum_probs=70.5
Q ss_pred CccccCCCCCCCCcEEEEccCCceEeeeCCCCceeccCCcchhcccccccCCCCCCCCCceeeeCCCCceEEEeCCCcee
Q psy6910 287 PLLELDLGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRLCKFQKKLEDCSDDELPYGWERIDDPAYGTYYIDHVNKQT 366 (1145)
Q Consensus 287 ~~~~~~~~pLP~gWe~~~~~~Gr~yyidh~t~tT~W~~Pr~~~~~~~~~~~~~~~LP~gWe~~~~~~g~~yyinh~~k~t 366 (1145)
.+.+....|||+||...+|-.||.||||||++||+|.||-. -..||+||++.+++.-++||+||.+|++
T Consensus 85 ~~~~sedlPLPpgWav~~T~~grkYYIDHn~~tTHW~HPle-----------rEgLppGW~rv~s~e~GtyY~~~~~k~t 153 (271)
T KOG1891|consen 85 SCDCSEDLPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLE-----------REGLPPGWKRVFSPEKGTYYYHEEMKRT 153 (271)
T ss_pred cCCCcccCCCCCCcceeeEecCceeEeecCCCcccccChhh-----------hccCCcchhhccccccceeeeecccchh
Confidence 44556778999999999999999999999999999999942 2379999999999999999999999999
Q ss_pred eCcCCcccc
Q psy6910 367 QYENPVLQA 375 (1145)
Q Consensus 367 ~~~~P~~~~ 375 (1145)
|++||++..
T Consensus 154 Qy~HPc~~s 162 (271)
T KOG1891|consen 154 QYEHPCISS 162 (271)
T ss_pred hhcCCCCCC
Confidence 999999863
No 17
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.53 E-value=1.6e-14 Score=140.81 Aligned_cols=147 Identities=17% Similarity=0.064 Sum_probs=128.9
Q ss_pred CCcEEEEEecCCccCcccchhccccCCCCchHHHHhhhhccC-cceeecccccCCCCCCCcCCccEEEeCHHHHHHHHHc
Q psy6910 99 GKTLTLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRDN-LYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKS 177 (1145)
Q Consensus 99 ~~~v~~~~~p~~~~~~~~~~~~~l~f~k~~i~~~l~~~~~~~-~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~~~ 177 (1145)
.|.++..+.||++. |++|+..+...+..+ .+.++..+.||+.-.| |+|+.-+|..+|.++..+
T Consensus 4 ~G~lI~vvGPSGAG-------------KDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag---~EdH~avs~~eF~~~a~~ 67 (192)
T COG3709 4 MGRLIAVVGPSGAG-------------KDTLLDAARARLAGRPRLHFVRRVITRPADAG---GEDHDALSEAEFNTRAGQ 67 (192)
T ss_pred CceEEEEECCCCCC-------------hHHHHHHHHHHhccCCceEEEEEEecccCCCC---cccccccCHHHHHHHhhc
Confidence 58899999999997 889998776665332 2667999999998877 889999999999999999
Q ss_pred CCEEEEEEeCCcccCCCccchhhhhcCCCCceeeecCCCChhhhhhhhcccccccceeEecCCChhhhhhhhhccCCCCc
Q psy6910 178 GCLLESGLYEGNHYGTPKPVKEPYVSLPQNVNLLPGAHPSSEGKRKRNRSNVEAMASKSIEPDMKTNGFDNKTVNMGNSS 257 (1145)
Q Consensus 178 ~~flE~~~~~g~~YGt~~~~i~~~~~~g~~~~~il~~~~~~~~~~~~~~~~~~~~~~ifi~pps~~~l~~rl~~rg~~s~ 257 (1145)
|.|.-+|+.||.+||++ .+|...++.|. ++|.| .++..+..+++.|+... .|.|..+. ++|.+||..||+|+.
T Consensus 68 g~FAlsWqAhGL~Ygip-~eId~wl~~G~--vvl~N--gSRa~Lp~arrry~~Ll-vv~ita~p-~VLaqRL~~RGREs~ 140 (192)
T COG3709 68 GAFALSWQAHGLSYGIP-AEIDLWLAAGD--VVLVN--GSRAVLPQARRRYPQLL-VVCITASP-EVLAQRLAERGRESR 140 (192)
T ss_pred CceeEEehhcCccccCc-hhHHHHHhCCC--EEEEe--ccHhhhHHHHHhhhcce-eEEEecCH-HHHHHHHHHhccCCH
Confidence 99999999999999999 56999999966 99988 78889999999999877 77777665 999999999999999
Q ss_pred ccccccCCCCC
Q psy6910 258 DYELNDNNGRE 268 (1145)
Q Consensus 258 ~~i~~~~~~~~ 268 (1145)
|+|.+||.|..
T Consensus 141 eeI~aRL~R~a 151 (192)
T COG3709 141 EEILARLARAA 151 (192)
T ss_pred HHHHHHHHhhc
Confidence 99999998744
No 18
>KOG3605|consensus
Probab=99.40 E-value=7.4e-13 Score=151.96 Aligned_cols=157 Identities=25% Similarity=0.474 Sum_probs=130.7
Q ss_pred eEEEEeccCCCcccEEEe-ecCCC--CCceEEEeCCCCcccccCCCCCCCEEEEECCeeecccCHHHHHHHHHcCC--CE
Q psy6910 921 YDVTITRRENEGFGFVII-SSLNK--AGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSG--YC 995 (1145)
Q Consensus 921 ~~V~l~r~~~~~lG~~l~-~~~~~--~g~~I~~v~~gs~A~~~G~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~--~~ 995 (1145)
.+|.+.|..++.||+.|. ++++. ..++|..+..++||+++|+|-.||+|++|||.++.++....+...||... ..
T Consensus 647 KEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~ 726 (829)
T KOG3605|consen 647 KEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTA 726 (829)
T ss_pred ceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccce
Confidence 577788888999998875 44443 45778999999999999999999999999999999999999999999754 45
Q ss_pred EEEEEeCCCCCCCCCCCcccCccCCCCCCCCCCCCcccEEEEeecCCc--ceeEEEEccCCcccccEEEEEEcCCChhcc
Q psy6910 996 VTLTIGAPISGDDASSTTSVSAASHREYEEGGEHDEQYHAIELSRGTR--GFGFSIRGGREFQNMALFVLQIAENGPAAL 1073 (1145)
Q Consensus 996 v~L~v~r~~~~~~~~~~~s~~~~~~~~~p~~~~~~~~~~~v~l~k~~~--~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~ 1073 (1145)
|+|+|.+. +-..+|.+.|... -|||++..| +|+++..||.|++
T Consensus 727 VkltiV~c---------------------------pPV~~V~I~RPd~kyQLGFSVQNG--------iICSLlRGGIAER 771 (829)
T KOG3605|consen 727 VKLNIVSC---------------------------PPVTTVLIRRPDLRYQLGFSVQNG--------IICSLLRGGIAER 771 (829)
T ss_pred EEEEEecC---------------------------CCceEEEeecccchhhccceeeCc--------Eeehhhcccchhc
Confidence 77877542 1235666766543 699999765 5999999999999
Q ss_pred cCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEE
Q psy6910 1074 DGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLL 1113 (1145)
Q Consensus 1074 ~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~~~v~L~ 1113 (1145)
-| +++|-+|++|||++|--..|+.+|++|..+-+.+.++
T Consensus 772 GG-VRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIhMK 810 (829)
T KOG3605|consen 772 GG-VRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIHMK 810 (829)
T ss_pred cC-ceeeeeEEEECCceEEeccHHHHHHHHHHhhhhhhhh
Confidence 99 9999999999999999999999999999877766553
No 19
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.37 E-value=3.5e-13 Score=142.39 Aligned_cols=144 Identities=15% Similarity=-0.031 Sum_probs=116.6
Q ss_pred CcEEEEEecCCccCcccchhccccCCCCchHHHHhhhhccCcceeecccccCCCCCCCcCCccEEEeCHHHHHHHHHcCC
Q psy6910 100 KTLTLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGC 179 (1145)
Q Consensus 100 ~~v~~~~~p~~~~~~~~~~~~~l~f~k~~i~~~l~~~~~~~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~~~~~ 179 (1145)
|.+.+.++|+|.+ |+||++.|.....+.+ .....++||+++.+ +.+|+|++.++|.++++++.
T Consensus 2 g~~i~l~G~sGsG-------------KsTl~~~l~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 64 (186)
T PRK10078 2 GKLIWLMGPSGSG-------------KDSLLAALRQREQTQL-LVAHRYITRPASAG---SENHIALSEQEFFTRAGQNL 64 (186)
T ss_pred CcEEEEECCCCCC-------------HHHHHHHHhccCCCeE-EEcCEECCCccchh---HHhheeEcHHHHHHHHHCCc
Confidence 4678889999996 8899998877754454 45888999987755 77899999999999999999
Q ss_pred EEEEEEeCCcccCCCccchhhhhcCCCCceeeecCCCChhhhhhhhcccccccceeEecCCChhhhhhhhhccCCCCccc
Q psy6910 180 LLESGLYEGNHYGTPKPVKEPYVSLPQNVNLLPGAHPSSEGKRKRNRSNVEAMASKSIEPDMKTNGFDNKTVNMGNSSDY 259 (1145)
Q Consensus 180 flE~~~~~g~~YGt~~~~i~~~~~~g~~~~~il~~~~~~~~~~~~~~~~~~~~~~ifi~pps~~~l~~rl~~rg~~s~~~ 259 (1145)
|+|+|.++||||||++ +++..++.|+ .||++ ........+++.+.... .|++..++.+++.+||..|++.+.++
T Consensus 65 ~~~~~~~~g~~yg~~~-~~~~~l~~g~--~VI~~--G~~~~~~~~~~~~~~~~-~vi~l~~s~e~l~~RL~~R~~~~~~~ 138 (186)
T PRK10078 65 FALSWHANGLYYGVGI-EIDLWLHAGF--DVLVN--GSRAHLPQARARYQSAL-LPVCLQVSPEILRQRLENRGRENASE 138 (186)
T ss_pred hhhHHHHhCCccCCcH-HHHHHHhCCC--EEEEe--ChHHHHHHHHHHcCCCE-EEEEEeCCHHHHHHHHHHhCCCCHHH
Confidence 9999999999999998 6999999977 77775 44455556666665555 55566677899999999998888888
Q ss_pred ccccCCC
Q psy6910 260 ELNDNNG 266 (1145)
Q Consensus 260 i~~~~~~ 266 (1145)
+++|+.+
T Consensus 139 i~~rl~r 145 (186)
T PRK10078 139 INARLAR 145 (186)
T ss_pred HHHHHHH
Confidence 8877743
No 20
>KOG3550|consensus
Probab=99.36 E-value=1.4e-12 Score=123.78 Aligned_cols=82 Identities=32% Similarity=0.488 Sum_probs=76.8
Q ss_pred eEEEEEEecccceeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeE
Q psy6910 436 RIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETV 515 (1145)
Q Consensus 436 ~~~v~l~k~~~glG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v 515 (1145)
...|+|-|...||||.|.||... +.+|||++|+|||.|++.|.|+.||++|+|||+++.|-.|+.|+++||.. -..|
T Consensus 91 prvvelpktdeglgfnvmggkeq-nspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa--~gsv 167 (207)
T KOG3550|consen 91 PRVVELPKTDEGLGFNVMGGKEQ-NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAA--VGSV 167 (207)
T ss_pred CceeecCccccccceeeccCccc-CCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHh--cCcE
Confidence 45789999999999999999988 88999999999999999999999999999999999999999999999995 3589
Q ss_pred EEEEE
Q psy6910 516 QLEVC 520 (1145)
Q Consensus 516 ~l~v~ 520 (1145)
+|+|+
T Consensus 168 klvvr 172 (207)
T KOG3550|consen 168 KLVVR 172 (207)
T ss_pred EEEEe
Confidence 99995
No 21
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.34 E-value=4e-12 Score=115.06 Aligned_cols=80 Identities=36% Similarity=0.590 Sum_probs=71.9
Q ss_pred EEEEEe-cccceeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEE
Q psy6910 438 HSSLVK-SLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQ 516 (1145)
Q Consensus 438 ~v~l~k-~~~glG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~ 516 (1145)
+|.|.| ...+|||++.++.+....+++|.+|.++|||+++| |++||+|++|||+++.+++|.+++.+|+.+ +..|+
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~--~~~v~ 77 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSA--SNPVT 77 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHS--TSEEE
T ss_pred CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCC--CCcEE
Confidence 478888 66789999999987634689999999999999999 999999999999999999999999999994 45899
Q ss_pred EEEE
Q psy6910 517 LEVC 520 (1145)
Q Consensus 517 l~v~ 520 (1145)
|+|.
T Consensus 78 L~V~ 81 (81)
T PF00595_consen 78 LTVQ 81 (81)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9873
No 22
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.33 E-value=3.5e-12 Score=115.42 Aligned_cols=79 Identities=29% Similarity=0.458 Sum_probs=74.7
Q ss_pred eEEEeCCCCCCCceeeeccccCC-CceEEEEecCCccccccCCCCCCcEEEeeCCEEecCCCHHHHHHHHHhhcCCCCcE
Q psy6910 24 PVTLTVPPDGSLNFSVGGGSDSG-EFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGYTRRDTIAWLNHCCRSGKTL 102 (1145)
Q Consensus 24 ~~~~~~~~~g~~~~~i~gg~e~g-~~~~v~~i~~~~~~~~sg~l~~GD~i~evng~~v~g~~~~~~~~~l~~~~~~~~~v 102 (1145)
+|.|.|.++++|||+|.++.+.. ..++|+.|.++++|++.| |++||+|++|||++|.+++..++.++|+.+ .+.|
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~---~~~v 76 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSA---SNPV 76 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHS---TSEE
T ss_pred CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCC---CCcE
Confidence 47888889999999999998876 689999999999999999 999999999999999999999999999999 8899
Q ss_pred EEEE
Q psy6910 103 TLRT 106 (1145)
Q Consensus 103 ~~~~ 106 (1145)
+|+|
T Consensus 77 ~L~V 80 (81)
T PF00595_consen 77 TLTV 80 (81)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9987
No 23
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.32 E-value=2e-11 Score=145.64 Aligned_cols=154 Identities=28% Similarity=0.383 Sum_probs=109.0
Q ss_pred CCceEEEeCCCCcccccCCCCCCCEEEEECCeeecccCHHHHHHHHH--cCCCEEEEEEeCCCCCCCCCCCcccCccCCC
Q psy6910 944 AGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIK--DSGYCVTLTIGAPISGDDASSTTSVSAASHR 1021 (1145)
Q Consensus 944 ~g~~I~~v~~gs~A~~~G~L~~GD~Il~VNG~~v~~~~~~~~~~~l~--~~~~~v~L~v~r~~~~~~~~~~~s~~~~~~~ 1021 (1145)
.+++|..|.++|||+++| |++||+|++|||+.+.++. ++..++. ..+..+.|++.|..............+.
T Consensus 257 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~~~--~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~--- 330 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISSFA--DLRRAIGTLKPGKKVTLGILRKGKEKTITVTLGASPE--- 330 (428)
T ss_pred CceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCCHH--HHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECcCCC---
Confidence 488999999999999999 9999999999999997654 4444443 3578899999774321110000000000
Q ss_pred CCCCCCCCCcccEEEEeecCCcceeEEEEccCC---------cccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcC
Q psy6910 1022 EYEEGGEHDEQYHAIELSRGTRGFGFSIRGGRE---------FQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTK 1092 (1145)
Q Consensus 1022 ~~p~~~~~~~~~~~v~l~k~~~~lG~sl~gg~~---------~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~ 1092 (1145)
... ......+|+.+..-.. ....+++|..|.++|+|+++| |++||+|++|||+++.
T Consensus 331 -------~~~-------~~~~~~lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~ 395 (428)
T TIGR02037 331 -------EQA-------SSSNPFLGLTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVS 395 (428)
T ss_pred -------ccc-------cccccccceEEecCCHHHHHHcCCCcCcCceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcC
Confidence 000 0011235666542111 012589999999999999999 9999999999999998
Q ss_pred CCCHHHHHHHHHc--CCCeEEEEEEeCCCc
Q psy6910 1093 NMTHAEAIEIIRN--GDSTVRLLIKRGGSV 1120 (1145)
Q Consensus 1093 ~~s~~eav~~lk~--~~~~v~L~v~R~~~~ 1120 (1145)
+++++.++|++ .++.+.|+|.|++..
T Consensus 396 --s~~d~~~~l~~~~~g~~v~l~v~R~g~~ 423 (428)
T TIGR02037 396 --SVAELRKVLDRAKKGGRVALLILRGGAT 423 (428)
T ss_pred --CHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 78899999986 357799999998864
No 24
>KOG3605|consensus
Probab=99.29 E-value=1.1e-11 Score=142.56 Aligned_cols=158 Identities=23% Similarity=0.336 Sum_probs=129.1
Q ss_pred EEEEEEeec-CCcccEEEc--cCCccCCceEEEEeCCCChhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhccCCC
Q psy6910 820 VMVITLLRQ-ENGFGFRIV--GGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYG 896 (1145)
Q Consensus 820 ~~v~~L~k~-~~glGf~l~--gg~~~~~~i~V~~V~pgs~A~~~G~L~~GD~IlsVNG~~v~~~s~~~~~~~L~~~~~~~ 896 (1145)
-+| .|.|. ++.||+.|+ |+..--.-++|..++++|||+++|+|..||+|++|||.++-++.......+++......
T Consensus 647 KEV-vv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT 725 (829)
T KOG3605|consen 647 KEV-VLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQT 725 (829)
T ss_pred cee-eeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccc
Confidence 345 56666 889999986 22222234788999999999999999999999999999999999999999999886666
Q ss_pred eEEEEEeeccCCCCcccccCCCCCeEEEEeccC-CCcccEEEeecCCCCCceEEEeCCCCcccccCCCCCCCEEEEECCe
Q psy6910 897 RVTLGIRRKVMPPAETTSMMLGYPYDVTITRRE-NEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHV 975 (1145)
Q Consensus 897 ~v~L~v~r~~~~~~~~~~~~~~~~~~V~l~r~~-~~~lG~~l~~~~~~~g~~I~~v~~gs~A~~~G~L~~GD~Il~VNG~ 975 (1145)
.|+|.|.+-.+. .+|.+.|.+ ...|||++..+ +|.++..|++|++.| +++|.+|+.|||+
T Consensus 726 ~VkltiV~cpPV------------~~V~I~RPd~kyQLGFSVQNG------iICSLlRGGIAERGG-VRVGHRIIEINgQ 786 (829)
T KOG3605|consen 726 AVKLNIVSCPPV------------TTVLIRRPDLRYQLGFSVQNG------IICSLLRGGIAERGG-VRVGHRIIEINGQ 786 (829)
T ss_pred eEEEEEecCCCc------------eEEEeecccchhhccceeeCc------EeehhhcccchhccC-ceeeeeEEEECCc
Confidence 789988774433 456665544 45799998643 799999999999999 9999999999999
Q ss_pred eecccCHHHHHHHHHcCCCEEE
Q psy6910 976 DIMSLHHGEIVNLIKDSGYCVT 997 (1145)
Q Consensus 976 ~v~~~~~~~~~~~l~~~~~~v~ 997 (1145)
+|....|+.++++|..+-..|.
T Consensus 787 SVVA~pHekIV~lLs~aVGEIh 808 (829)
T KOG3605|consen 787 SVVATPHEKIVQLLSNAVGEIH 808 (829)
T ss_pred eEEeccHHHHHHHHHHhhhhhh
Confidence 9999999999999998644443
No 25
>KOG3552|consensus
Probab=99.29 E-value=1.7e-12 Score=153.33 Aligned_cols=130 Identities=32% Similarity=0.570 Sum_probs=102.6
Q ss_pred CCceeccCCcchhcccccccCCCCCCCCCceeeeCCCCceEEEeCCCceeeCcCCccccccCCCCCCCCCCCCCCCcccC
Q psy6910 317 SSTSSWLDPRLCKFQKKLEDCSDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQAKHRDQGAGPSEMDDNEHKVKD 396 (1145)
Q Consensus 317 t~tT~W~~Pr~~~~~~~~~~~~~~~LP~gWe~~~~~~g~~yyinh~~k~t~~~~P~~~~~~~~~~~~~~~~~p~~w~~~~ 396 (1145)
+..+.|..|+..+.. ...|+++|+++.|..|+.||+||.+++|++++|.-- -|
T Consensus 2 ~~~a~~~p~~~~~~~-------~~~v~~~~~r~~dsk~r~~y~~~~~~~~~~~~~~~i----------------~~---- 54 (1298)
T KOG3552|consen 2 TQSAGWLPACEDWSK-------HEELSYGWERAIDSKGRSYYINHLNKTTTYEAPECI----------------RW---- 54 (1298)
T ss_pred cccccCCCCcccccc-------ccccchHHHHhhhcccchhHHhhcCCccCcCCCccc----------------cC----
Confidence 456788877643321 347999999999999999999999999999887431 01
Q ss_pred CCCcccCCCCCCCccccCCCCCCCCCCcccCCCCcCccceEEEEEEecc-cceeEEEecCCCCCCccEEEEEeccCCccc
Q psy6910 397 SPGKRIAPQARNTLVSTSNRSNNDENYFFTLNPDELIGERIHSSLVKSL-RGLGFTIVGGDDSKEEFLQIKSVVPNGPAA 475 (1145)
Q Consensus 397 ~~g~~~~~~h~~~~~s~~~~~~~~~~~~~~~~p~~~~g~~~~v~l~k~~-~glG~~i~gg~~~~~~~i~V~~v~~~g~A~ 475 (1145)
+...|++.+.. -|||| ++| .+++|..|.+|||+
T Consensus 55 --------------------------------------~pr~vq~~r~~~lGFgf-vag------rPviVr~VT~GGps- 88 (1298)
T KOG3552|consen 55 --------------------------------------EPRQVQLQRNASLGFGF-VAG------RPVIVRFVTEGGPS- 88 (1298)
T ss_pred --------------------------------------cchhhhhhcccccccee-ecC------CceEEEEecCCCCc-
Confidence 01124444443 37777 333 36999999999999
Q ss_pred ccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEEEeC
Q psy6910 476 LEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522 (1145)
Q Consensus 476 ~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 522 (1145)
.|+|+|||+||.|||++|..+..+.|++++|.|. +.|.|+|++.
T Consensus 89 -~GKL~PGDQIl~vN~Epv~daprervIdlvRace--~sv~ltV~qP 132 (1298)
T KOG3552|consen 89 -IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACE--SSVNLTVCQP 132 (1298)
T ss_pred -cccccCCCeEEEecCcccccccHHHHHHHHHHHh--hhcceEEecc
Confidence 5999999999999999999999999999999964 6999999997
No 26
>PRK10139 serine endoprotease; Provisional
Probab=99.29 E-value=3.3e-11 Score=143.57 Aligned_cols=157 Identities=20% Similarity=0.263 Sum_probs=107.8
Q ss_pred CCceEEEeCCCCcccccCCCCCCCEEEEECCeeecccCHHHHHHHHH--cCCCEEEEEEeCCCCCCCCCCCcccCccCCC
Q psy6910 944 AGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIK--DSGYCVTLTIGAPISGDDASSTTSVSAASHR 1021 (1145)
Q Consensus 944 ~g~~I~~v~~gs~A~~~G~L~~GD~Il~VNG~~v~~~~~~~~~~~l~--~~~~~v~L~v~r~~~~~~~~~~~s~~~~~~~ 1021 (1145)
.|++|..|.++|||+++| |++||+|++|||+++.++ .++...+. ..++.+.|+|.|...............
T Consensus 290 ~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~~~~~---- 362 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTST---- 362 (455)
T ss_pred CceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCCC----
Confidence 488999999999999999 999999999999999775 45555554 357788998877432110000000000
Q ss_pred CCCCCCCCCcccEEEEeecCCcceeEEEEccCC-cccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHH
Q psy6910 1022 EYEEGGEHDEQYHAIELSRGTRGFGFSIRGGRE-FQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAI 1100 (1145)
Q Consensus 1022 ~~p~~~~~~~~~~~v~l~k~~~~lG~sl~gg~~-~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav 1100 (1145)
.. .. ....+ .....|+.+..... ....+++|..|.++++|+++| |++||+|++|||+++. +++++.
T Consensus 363 ~~------~~--~~~~~--~~~~~g~~l~~~~~~~~~~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~--~~~~~~ 429 (455)
T PRK10139 363 SS------SA--SAEMI--TPALQGATLSDGQLKDGTKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVN--SIAEMR 429 (455)
T ss_pred Cc------cc--ccccc--cccccccEecccccccCCCceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHH
Confidence 00 00 00000 00112333322110 013579999999999999999 9999999999999998 889999
Q ss_pred HHHHcCCCeEEEEEEeCCCc
Q psy6910 1101 EIIRNGDSTVRLLIKRGGSV 1120 (1145)
Q Consensus 1101 ~~lk~~~~~v~L~v~R~~~~ 1120 (1145)
++|++.++.+.|++.|++..
T Consensus 430 ~~l~~~~~~v~l~v~R~g~~ 449 (455)
T PRK10139 430 KVLAAKPAIIALQIVRGNES 449 (455)
T ss_pred HHHHhCCCeEEEEEEECCEE
Confidence 99998777899999998864
No 27
>PRK10942 serine endoprotease; Provisional
Probab=99.28 E-value=5.4e-11 Score=142.42 Aligned_cols=154 Identities=24% Similarity=0.250 Sum_probs=107.7
Q ss_pred CCceEEEeCCCCcccccCCCCCCCEEEEECCeeecccCHHHHHHHHH--cCCCEEEEEEeCCCCCCCCCCCcccCccCCC
Q psy6910 944 AGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIK--DSGYCVTLTIGAPISGDDASSTTSVSAASHR 1021 (1145)
Q Consensus 944 ~g~~I~~v~~gs~A~~~G~L~~GD~Il~VNG~~v~~~~~~~~~~~l~--~~~~~v~L~v~r~~~~~~~~~~~s~~~~~~~ 1021 (1145)
.|++|..|.++|+|+++| |+.||+|++|||+.+.++. ++...+. ..+..+.|.+.|..............
T Consensus 311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~--dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~l~~~----- 382 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFA--ALRAQVGTMPVGSKLTLGLLRDGKPVNVNVELQQS----- 382 (473)
T ss_pred CceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCHH--HHHHHHHhcCCCCEEEEEEEECCeEEEEEEEeCcC-----
Confidence 488999999999999999 9999999999999997754 4444444 35678899887743211100000000
Q ss_pred CCCCCCCCCcccEEEEeecCCcceeEEEEccCC-cccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHH
Q psy6910 1022 EYEEGGEHDEQYHAIELSRGTRGFGFSIRGGRE-FQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAI 1100 (1145)
Q Consensus 1022 ~~p~~~~~~~~~~~v~l~k~~~~lG~sl~gg~~-~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav 1100 (1145)
+ ... .......+|+....-.+ ....+++|..|.++|+|+++| |++||+|++|||+.+. +++++.
T Consensus 383 ~-------~~~-----~~~~~~~lGl~g~~l~~~~~~~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~--s~~dl~ 447 (473)
T PRK10942 383 S-------QNQ-----VDSSNIFNGIEGAELSNKGGDKGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVK--NIAELR 447 (473)
T ss_pred c-------ccc-----cccccccccceeeecccccCCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHH
Confidence 0 000 00000124443221111 113579999999999999999 9999999999999998 789999
Q ss_pred HHHHcCCCeEEEEEEeCCCc
Q psy6910 1101 EIIRNGDSTVRLLIKRGGSV 1120 (1145)
Q Consensus 1101 ~~lk~~~~~v~L~v~R~~~~ 1120 (1145)
+++++.+..+.|+|.|++..
T Consensus 448 ~~l~~~~~~v~l~V~R~g~~ 467 (473)
T PRK10942 448 KILDSKPSVLALNIQRGDSS 467 (473)
T ss_pred HHHHhCCCeEEEEEEECCEE
Confidence 99998777899999998854
No 28
>KOG3550|consensus
Probab=99.26 E-value=1.1e-11 Score=117.91 Aligned_cols=88 Identities=28% Similarity=0.607 Sum_probs=82.0
Q ss_pred ccEEEEeecCCcceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEE
Q psy6910 1032 QYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVR 1111 (1145)
Q Consensus 1032 ~~~~v~l~k~~~~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~~~v~ 1111 (1145)
-.+.|+|.|...+|||.+.||++. +.++||.+|+|||.|++.|.|+.||++++|||.+|.+--|+.++++||.+.+.|.
T Consensus 90 hprvvelpktdeglgfnvmggkeq-nspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvk 168 (207)
T KOG3550|consen 90 HPRVVELPKTDEGLGFNVMGGKEQ-NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVK 168 (207)
T ss_pred CCceeecCccccccceeeccCccc-CCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEE
Confidence 357899999999999999999987 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCc
Q psy6910 1112 LLIKRGGSV 1120 (1145)
Q Consensus 1112 L~v~R~~~~ 1120 (1145)
|+|+.-.+.
T Consensus 169 lvvrytpkv 177 (207)
T KOG3550|consen 169 LVVRYTPKV 177 (207)
T ss_pred EEEecChHH
Confidence 999865544
No 29
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.26 E-value=4.5e-11 Score=143.04 Aligned_cols=154 Identities=19% Similarity=0.305 Sum_probs=107.9
Q ss_pred CceEEEeCCCCcccccCCCCCCCEEEEECCeeecccCHHHHHHHHHcCCCEEEEEEeCCCCCCCCCCCcccCccCCCCCC
Q psy6910 945 GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSAASHREYE 1024 (1145)
Q Consensus 945 g~~I~~v~~gs~A~~~G~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~L~v~r~~~~~~~~~~~s~~~~~~~~~p 1024 (1145)
..+|..|.++|||+++| |+.||+|++|||+++.+++.....-..+..++.+.+++.|.............. +.+
T Consensus 127 ~~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~~~-----~~~ 200 (449)
T PRK10779 127 RPVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKTLDLR-----HWA 200 (449)
T ss_pred CccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEEeccc-----ccc
Confidence 45789999999999999 999999999999999887655444444456678999998754322111000000 000
Q ss_pred CCCCCCcccEEEEeecCCcceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHH
Q psy6910 1025 EGGEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIR 1104 (1145)
Q Consensus 1025 ~~~~~~~~~~~v~l~k~~~~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk 1104 (1145)
..... ......+|+..... ..++.|..|.++|+|+++| |++||+|++|||+.+. +++++.+.++
T Consensus 201 ---~~~~~------~~~~~~lGl~~~~~----~~~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~--s~~dl~~~l~ 264 (449)
T PRK10779 201 ---FEPDK------QDPVSSLGIRPRGP----QIEPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLT--QWQTFVTLVR 264 (449)
T ss_pred ---cCccc------cchhhcccccccCC----CcCcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHH
Confidence 00000 00012366533211 3357899999999999999 9999999999999998 8899999998
Q ss_pred cC-CCeEEEEEEeCCCc
Q psy6910 1105 NG-DSTVRLLIKRGGSV 1120 (1145)
Q Consensus 1105 ~~-~~~v~L~v~R~~~~ 1120 (1145)
.. ++.+.|++.|++..
T Consensus 265 ~~~~~~v~l~v~R~g~~ 281 (449)
T PRK10779 265 DNPGKPLALEIERQGSP 281 (449)
T ss_pred hCCCCEEEEEEEECCEE
Confidence 74 45699999998864
No 30
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.24 E-value=2.4e-11 Score=127.52 Aligned_cols=143 Identities=15% Similarity=0.059 Sum_probs=114.7
Q ss_pred CcEEEEEecCCccCcccchhccccCCCCchHHHHhhhhccC-cceeecccccCCCCCCCcCCccEEEeCHHHHHHHHHcC
Q psy6910 100 KTLTLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRDN-LYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSG 178 (1145)
Q Consensus 100 ~~v~~~~~p~~~~~~~~~~~~~l~f~k~~i~~~l~~~~~~~-~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~~~~ 178 (1145)
|.+.+.++|++++ |+++++.|...+... ...+.+++|||+++ .+|++|+|+++++|..++.++
T Consensus 1 ~~~~~i~G~sGsG-------------Kttl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~ 64 (179)
T TIGR02322 1 GRLIYVVGPSGAG-------------KDTLLDYARARLAGDPRVHFVRRVITRPAS---AGGENHIALSTEEFDHREDGG 64 (179)
T ss_pred CcEEEEECCCCCC-------------HHHHHHHHHHHcCcCCcEEEeeEEcccCCC---CCCccccccCHHHHHHHHHCC
Confidence 4577888999986 889998887764321 23458999999875 459999999999999999999
Q ss_pred CEEEEEEeCCcccCCCccchhhhhcCCCCceeeecCCCChhhhhhhhcccccccceeEecCCChhhhhhhhhccCCCCcc
Q psy6910 179 CLLESGLYEGNHYGTPKPVKEPYVSLPQNVNLLPGAHPSSEGKRKRNRSNVEAMASKSIEPDMKTNGFDNKTVNMGNSSD 258 (1145)
Q Consensus 179 ~flE~~~~~g~~YGt~~~~i~~~~~~g~~~~~il~~~~~~~~~~~~~~~~~~~~~~ifi~pps~~~l~~rl~~rg~~s~~ 258 (1145)
+|.+++++.+++||++. .+...+++|+ .||++.. ......+++.+.+.. +||+.+ +.+++.+||..|++...+
T Consensus 65 ~~~~~~~~~~~~~g~~~-~i~~~~~~g~--~vv~~g~--~~~~~~~~~~~~~~~-~i~l~~-~~~~~~~Rl~~R~~~~~~ 137 (179)
T TIGR02322 65 AFALSWQAHGLSYGIPA-EIDQWLEAGD--VVVVNGS--RAVLPEARQRYPNLL-VVNITA-SPDVLAQRLAARGRESRE 137 (179)
T ss_pred CEEEEEeecCccccChH-HHHHHHhcCC--EEEEECC--HHHHHHHHHHCCCcE-EEEEEC-CHHHHHHHHHHcCCCCHH
Confidence 99999999999999997 5888888866 8888865 455566666666666 788875 569999999999887777
Q ss_pred cccccCC
Q psy6910 259 YELNDNN 265 (1145)
Q Consensus 259 ~i~~~~~ 265 (1145)
.+++|+.
T Consensus 138 ~~~~rl~ 144 (179)
T TIGR02322 138 EIEERLA 144 (179)
T ss_pred HHHHHHH
Confidence 7776764
No 31
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.18 E-value=2.2e-10 Score=136.77 Aligned_cols=145 Identities=29% Similarity=0.413 Sum_probs=110.1
Q ss_pred CCceEEEEeCCCChhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhccCCCeEEEEEeeccCCCCcccccCCCCCeE
Q psy6910 843 GSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSMMLGYPYD 922 (1145)
Q Consensus 843 ~~~i~V~~V~pgs~A~~~G~L~~GD~IlsVNG~~v~~~s~~~~~~~L~~~~~~~~v~L~v~r~~~~~~~~~~~~~~~~~~ 922 (1145)
..+++|..|.+++||+++| |++||+|++|||..+. ++.++...+.....+..+.|++.|++... ...
T Consensus 256 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~--~~~~~~~~l~~~~~g~~v~l~v~R~g~~~----------~~~ 322 (428)
T TIGR02037 256 QRGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPIS--SFADLRRAIGTLKPGKKVTLGILRKGKEK----------TIT 322 (428)
T ss_pred CCceEEEEccCCCChHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEE----------EEE
Confidence 3578999999999999999 9999999999999999 66777777776655678999999876441 112
Q ss_pred EEEecc-------CCCcccEEEeecC-----------CCCCceEEEeCCCCcccccCCCCCCCEEEEECCeeecccCHHH
Q psy6910 923 VTITRR-------ENEGFGFVIISSL-----------NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGE 984 (1145)
Q Consensus 923 V~l~r~-------~~~~lG~~l~~~~-----------~~~g~~I~~v~~gs~A~~~G~L~~GD~Il~VNG~~v~~~~~~~ 984 (1145)
+.+... ....+|+.+.... ...+++|..|.++|+|+++| |++||+|++|||+++.+ ..+
T Consensus 323 v~l~~~~~~~~~~~~~~lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s--~~d 399 (428)
T TIGR02037 323 VTLGASPEEQASSSNPFLGLTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSS--VAE 399 (428)
T ss_pred EEECcCCCccccccccccceEEecCCHHHHHHcCCCcCcCceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHH
Confidence 222111 1223676654211 11489999999999999999 99999999999999976 456
Q ss_pred HHHHHHc--CCCEEEEEEeCC
Q psy6910 985 IVNLIKD--SGYCVTLTIGAP 1003 (1145)
Q Consensus 985 ~~~~l~~--~~~~v~L~v~r~ 1003 (1145)
+..+++. .++.+.|.|.|.
T Consensus 400 ~~~~l~~~~~g~~v~l~v~R~ 420 (428)
T TIGR02037 400 LRKVLDRAKKGGRVALLILRG 420 (428)
T ss_pred HHHHHHhcCCCCEEEEEEEEC
Confidence 6777764 467899999774
No 32
>PRK10139 serine endoprotease; Provisional
Probab=99.17 E-value=3.5e-10 Score=134.83 Aligned_cols=165 Identities=19% Similarity=0.283 Sum_probs=115.9
Q ss_pred cceEEEEEEeec-CCcccEEEccCCccCCceEEEEeCCCChhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhccCC
Q psy6910 817 YSDVMVITLLRQ-ENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVY 895 (1145)
Q Consensus 817 ~~~~~v~~L~k~-~~glGf~l~gg~~~~~~i~V~~V~pgs~A~~~G~L~~GD~IlsVNG~~v~~~s~~~~~~~L~~~~~~ 895 (1145)
|..+.+..|... ...||+. ...+++|..|.++|||+++| |++||+|++|||.++. ++.++...+.....+
T Consensus 268 ~LGv~~~~l~~~~~~~lgl~------~~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g 338 (455)
T PRK10139 268 LLGIKGTEMSADIAKAFNLD------VQRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIATTEPG 338 (455)
T ss_pred ceeEEEEECCHHHHHhcCCC------CCCceEEEEECCCChHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCC
Confidence 445555445443 3344432 24578999999999999999 9999999999999999 678888888765456
Q ss_pred CeEEEEEeeccCCCCcccccCCCCCeEEEEeccCC----------CcccEEEeecC---CCCCceEEEeCCCCcccccCC
Q psy6910 896 GRVTLGIRRKVMPPAETTSMMLGYPYDVTITRREN----------EGFGFVIISSL---NKAGSTIGRIIEDSPADRSGE 962 (1145)
Q Consensus 896 ~~v~L~v~r~~~~~~~~~~~~~~~~~~V~l~r~~~----------~~lG~~l~~~~---~~~g~~I~~v~~gs~A~~~G~ 962 (1145)
..+.|++.|.+... .+.+.+..... ...|+.+.... ...+++|..|.++|+|+++|
T Consensus 339 ~~v~l~V~R~G~~~----------~l~v~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~Gv~V~~V~~~spA~~aG- 407 (455)
T PRK10139 339 TKVKLGLLRNGKPL----------EVEVTLDTSTSSSASAEMITPALQGATLSDGQLKDGTKGIKIDEVVKGSPAAQAG- 407 (455)
T ss_pred CEEEEEEEECCEEE----------EEEEEECCCCCcccccccccccccccEecccccccCCCceEEEEeCCCChHHHcC-
Confidence 68999998876431 11222211110 01233222110 11478999999999999999
Q ss_pred CCCCCEEEEECCeeecccCHHHHHHHHHcCCCEEEEEEeCC
Q psy6910 963 LHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAP 1003 (1145)
Q Consensus 963 L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~L~v~r~ 1003 (1145)
|++||+|++|||+++.++ .++..+++...+.+.|++.|.
T Consensus 408 L~~GD~I~~Ing~~v~~~--~~~~~~l~~~~~~v~l~v~R~ 446 (455)
T PRK10139 408 LQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIVRG 446 (455)
T ss_pred CCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEEC
Confidence 999999999999999664 567777776557888888773
No 33
>KOG3549|consensus
Probab=99.16 E-value=4.9e-11 Score=127.82 Aligned_cols=99 Identities=23% Similarity=0.345 Sum_probs=94.0
Q ss_pred ccccccccCCCccccceEeEEEeCCCCCCCceeeeccccCCCceEEEEecCCccccccCCCCCCcEEEeeCCEEecCCCH
Q psy6910 6 NKLDNLTAGGTHWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGYTR 85 (1145)
Q Consensus 6 ~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~i~gg~e~g~~~~v~~i~~~~~~~~sg~l~~GD~i~evng~~v~g~~~ 85 (1145)
.|+|-+.....|.-++-++|+|+|..-|.||+.|+|||||.--++|.+|...-+|+.+|.|.+||.||.|||+-|...++
T Consensus 39 QkqdVvcvsG~p~~s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~H 118 (505)
T KOG3549|consen 39 QKQDVVCVSGPPMESKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPH 118 (505)
T ss_pred hccceEecCCCCccCCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCCh
Confidence 35677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcEEEEEe
Q psy6910 86 RDTIAWLNHCCRSGKTLTLRTV 107 (1145)
Q Consensus 86 ~~~~~~l~~~~~~~~~v~~~~~ 107 (1145)
+||+.+|+++ .+.|+|.+-
T Consensus 119 eevV~iLRNA---GdeVtlTV~ 137 (505)
T KOG3549|consen 119 EEVVNILRNA---GDEVTLTVK 137 (505)
T ss_pred HHHHHHHHhc---CCEEEEEeH
Confidence 9999999999 999998874
No 34
>PRK10942 serine endoprotease; Provisional
Probab=99.14 E-value=9.4e-10 Score=131.86 Aligned_cols=145 Identities=21% Similarity=0.318 Sum_probs=110.1
Q ss_pred CCceEEEEeCCCChhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhccCCCeEEEEEeeccCCCCcccccCCCCCeE
Q psy6910 843 GSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSMMLGYPYD 922 (1145)
Q Consensus 843 ~~~i~V~~V~pgs~A~~~G~L~~GD~IlsVNG~~v~~~s~~~~~~~L~~~~~~~~v~L~v~r~~~~~~~~~~~~~~~~~~ 922 (1145)
..+++|..|.++++|+++| |+.||+|++|||..+. ++.++...+.....+..+.|.+.|.+... .+.
T Consensus 310 ~~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~G~~~----------~v~ 376 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDGKPV----------NVN 376 (473)
T ss_pred CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCeEE----------EEE
Confidence 4578999999999999999 9999999999999999 67788778877666678999999876441 122
Q ss_pred EEEecc-------CCCcccEEEeec---CCCCCceEEEeCCCCcccccCCCCCCCEEEEECCeeecccCHHHHHHHHHcC
Q psy6910 923 VTITRR-------ENEGFGFVIISS---LNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDS 992 (1145)
Q Consensus 923 V~l~r~-------~~~~lG~~l~~~---~~~~g~~I~~v~~gs~A~~~G~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~ 992 (1145)
+.+... ....+|+..... ....+++|..|.++|+|+++| |++||+|++|||+++.++ .++..+++..
T Consensus 377 v~l~~~~~~~~~~~~~~lGl~g~~l~~~~~~~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s~--~dl~~~l~~~ 453 (473)
T PRK10942 377 VELQQSSQNQVDSSNIFNGIEGAELSNKGGDKGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKNI--AELRKILDSK 453 (473)
T ss_pred EEeCcCcccccccccccccceeeecccccCCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhC
Confidence 222111 111245433211 112478999999999999999 999999999999999764 6677777776
Q ss_pred CCEEEEEEeCC
Q psy6910 993 GYCVTLTIGAP 1003 (1145)
Q Consensus 993 ~~~v~L~v~r~ 1003 (1145)
++.+.|+|.|.
T Consensus 454 ~~~v~l~V~R~ 464 (473)
T PRK10942 454 PSVLALNIQRG 464 (473)
T ss_pred CCeEEEEEEEC
Confidence 67888888773
No 35
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.11 E-value=4.6e-10 Score=133.00 Aligned_cols=135 Identities=24% Similarity=0.344 Sum_probs=100.7
Q ss_pred CCceEEEeCCCCcccccCCCCCCCEEEEECCeeecccCHHHHHHHHHcCCCEEEEEEeCCCCCCCCCCCcccCccCCCCC
Q psy6910 944 AGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSAASHREY 1023 (1145)
Q Consensus 944 ~g~~I~~v~~gs~A~~~G~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~L~v~r~~~~~~~~~~~s~~~~~~~~~ 1023 (1145)
.+.+|..|.++|||+++| |++||+|++|||.++.++.. +...+.....++.+.+.|....
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~~d--l~~~ia~~~~~v~~~I~r~g~~----------------- 187 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGFKD--VRQQIADIAGEPMVEILAEREN----------------- 187 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHH--HHHHHHhhcccceEEEEEecCc-----------------
Confidence 477899999999999999 99999999999999987653 3333333225677777663111
Q ss_pred CCCCCCCcccEEEEeecCCcceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy6910 1024 EEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEII 1103 (1145)
Q Consensus 1024 p~~~~~~~~~~~v~l~k~~~~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~l 1103 (1145)
..+.+ .+++.... . ..++.|..|.++++|+++| |++||+|++|||+++. +++++.+.+
T Consensus 188 ----------~~l~v-----~l~~~~~~--~--~~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~--s~~dl~~~l 245 (420)
T TIGR00054 188 ----------WTFEV-----MKELIPRG--P--KIEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLR--SWTDFVSAV 245 (420)
T ss_pred ----------eEecc-----cccceecC--C--CcCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHH
Confidence 11111 12222111 1 2468999999999999999 9999999999999998 789999999
Q ss_pred HcC-CCeEEEEEEeCCCc
Q psy6910 1104 RNG-DSTVRLLIKRGGSV 1120 (1145)
Q Consensus 1104 k~~-~~~v~L~v~R~~~~ 1120 (1145)
+.. +..+.|++.|++..
T Consensus 246 ~~~~~~~v~l~v~R~g~~ 263 (420)
T TIGR00054 246 KENPGKSMDIKVERNGET 263 (420)
T ss_pred HhCCCCceEEEEEECCEE
Confidence 874 45699999998864
No 36
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.08 E-value=1.4e-09 Score=130.33 Aligned_cols=141 Identities=19% Similarity=0.247 Sum_probs=105.0
Q ss_pred ceEEEEeCCCChhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhccCCCeEEEEEeeccCCCCcccccCCCCCeEEE
Q psy6910 845 QVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSMMLGYPYDVT 924 (1145)
Q Consensus 845 ~i~V~~V~pgs~A~~~G~L~~GD~IlsVNG~~v~~~s~~~~~~~L~~~~~~~~v~L~v~r~~~~~~~~~~~~~~~~~~V~ 924 (1145)
..+|..|.++|||+++| |++||.|++|||.++. +++++...+.....+..+.+++.|++.... ..++
T Consensus 127 ~~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~--~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~----------~~v~ 193 (449)
T PRK10779 127 RPVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETP--DWDAVRLALVSKIGDESTTITVAPFGSDQR----------RDKT 193 (449)
T ss_pred CccccccCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhhccCCceEEEEEeCCccce----------EEEE
Confidence 35789999999999999 9999999999999999 557776666666556789999999875421 1222
Q ss_pred Eec----------cCCCcccEEEeecCCCCCceEEEeCCCCcccccCCCCCCCEEEEECCeeecccCHHHHHHHHHc-CC
Q psy6910 925 ITR----------RENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKD-SG 993 (1145)
Q Consensus 925 l~r----------~~~~~lG~~l~~~~~~~g~~I~~v~~gs~A~~~G~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~~ 993 (1145)
+.. .....+|+... ....+..|..|.++|+|+++| |++||+|++|||+++.++ .++...++. .+
T Consensus 194 l~~~~~~~~~~~~~~~~~lGl~~~--~~~~~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~s~--~dl~~~l~~~~~ 268 (449)
T PRK10779 194 LDLRHWAFEPDKQDPVSSLGIRPR--GPQIEPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLTQW--QTFVTLVRDNPG 268 (449)
T ss_pred ecccccccCccccchhhccccccc--CCCcCcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCCC
Confidence 210 11224565322 222357899999999999999 999999999999999764 455555554 56
Q ss_pred CEEEEEEeCC
Q psy6910 994 YCVTLTIGAP 1003 (1145)
Q Consensus 994 ~~v~L~v~r~ 1003 (1145)
+.+.+++.|.
T Consensus 269 ~~v~l~v~R~ 278 (449)
T PRK10779 269 KPLALEIERQ 278 (449)
T ss_pred CEEEEEEEEC
Confidence 7889988763
No 37
>KOG3551|consensus
Probab=99.04 E-value=4.1e-10 Score=122.71 Aligned_cols=84 Identities=29% Similarity=0.400 Sum_probs=77.4
Q ss_pred cceEEEEEEe-cccceeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCC
Q psy6910 434 GERIHSSLVK-SLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPG 512 (1145)
Q Consensus 434 g~~~~v~l~k-~~~glG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g 512 (1145)
+....|.+.| +.+||||+|.||.++ .++|.|++|++|=+|++.+.|..||.||+|||.++...||+|||+.||. .|
T Consensus 83 ~~~R~V~V~K~d~gGLGISIKGGreN-kMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKr--aG 159 (506)
T KOG3551|consen 83 EAERRVRVVKQDAGGLGISIKGGREN-KMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKR--AG 159 (506)
T ss_pred cccceeEEEEecCCcceEEeecCccc-CCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHh--hC
Confidence 3346777777 578999999999999 9999999999999999999999999999999999999999999999999 79
Q ss_pred CeEEEEEE
Q psy6910 513 ETVQLEVC 520 (1145)
Q Consensus 513 ~~v~l~v~ 520 (1145)
..|.|.|.
T Consensus 160 keV~levK 167 (506)
T KOG3551|consen 160 KEVLLEVK 167 (506)
T ss_pred ceeeeeee
Confidence 99999884
No 38
>KOG3549|consensus
Probab=98.99 E-value=1.4e-09 Score=116.79 Aligned_cols=114 Identities=29% Similarity=0.499 Sum_probs=91.8
Q ss_pred CcccEEEEeecCC-cceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC
Q psy6910 1030 DEQYHAIELSRGT-RGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDS 1108 (1145)
Q Consensus 1030 ~~~~~~v~l~k~~-~~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~~ 1108 (1145)
....++|++.+.. ++||++|.||.+. +.|++|.+|..+-+|+..|.|-+||.|++|||+.|..++|+|+|++|+++|+
T Consensus 52 ~s~eRtVtirRQ~vGGlGLSIKGGaEH-n~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGd 130 (505)
T KOG3549|consen 52 ESKERTVTIRRQKVGGLGLSIKGGAEH-NLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGD 130 (505)
T ss_pred cCCceeEEEEeeecCcceeeecccccc-CccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCC
Confidence 3456888888754 5899999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEe--CC---------CcCCCCC----CCCCCCCCCCCCCccccCC
Q psy6910 1109 TVRLLIKR--GG---------SVVAPTD----NAAGIYSSDTSSNYWSRAI 1144 (1145)
Q Consensus 1109 ~v~L~v~R--~~---------~~~~~~~----~~~~~~~~~~~~~~~~~~~ 1144 (1145)
.|+|+|.. .. +.-|+++ +++..+++-.++|.++--|
T Consensus 131 eVtlTV~~lr~ApaFLklpL~~~~p~SD~ssg~sspl~DsGlhln~ns~T~ 181 (505)
T KOG3549|consen 131 EVTLTVKHLRAAPAFLKLPLTKDTPDSDNSSGCSSPLADSGLHLNVNSGTI 181 (505)
T ss_pred EEEEEeHhhhcCcHHhcCccCCCCCCccccccccccccccceeecccCCCc
Confidence 99999863 22 1223333 2444555556666665444
No 39
>KOG1892|consensus
Probab=98.95 E-value=1.5e-09 Score=128.75 Aligned_cols=87 Identities=31% Similarity=0.531 Sum_probs=77.4
Q ss_pred ccceEEEEEEecccceeEEEec--CCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCC
Q psy6910 433 IGERIHSSLVKSLRGLGFTIVG--GDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSIS 510 (1145)
Q Consensus 433 ~g~~~~v~l~k~~~glG~~i~g--g~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~ 510 (1145)
.-+++.|.|+|. +|+|++|+. |......+||||+|++||+|+.||||+.||+||+|||.++.|++.+.|.++|-.
T Consensus 931 ~pei~~vtL~Kn-nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtr-- 1007 (1629)
T KOG1892|consen 931 EPEIITVTLKKN-NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTR-- 1007 (1629)
T ss_pred CCceEEEEEecc-CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhc--
Confidence 445899999998 888888876 444456799999999999999999999999999999999999999999999998
Q ss_pred CCCeEEEEEEeC
Q psy6910 511 PGETVQLEVCRG 522 (1145)
Q Consensus 511 ~g~~v~l~v~R~ 522 (1145)
.|..|.|.|...
T Consensus 1008 tg~vV~leVaKq 1019 (1629)
T KOG1892|consen 1008 TGNVVHLEVAKQ 1019 (1629)
T ss_pred cCCeEEEehhhh
Confidence 799999999654
No 40
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.89 E-value=1.6e-08 Score=120.10 Aligned_cols=132 Identities=20% Similarity=0.283 Sum_probs=100.1
Q ss_pred CCceEEEEeCCCChhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhccCCCeEEEEEeeccCCCCcccccCCCCCeE
Q psy6910 843 GSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSMMLGYPYD 922 (1145)
Q Consensus 843 ~~~i~V~~V~pgs~A~~~G~L~~GD~IlsVNG~~v~~~s~~~~~~~L~~~~~~~~v~L~v~r~~~~~~~~~~~~~~~~~~ 922 (1145)
..+.+|..|.++|||+++| +++||.|++|||..+. ++.++...+.... +.+.+.+.|+... ..
T Consensus 127 ~~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~--~~~dl~~~ia~~~--~~v~~~I~r~g~~------------~~ 189 (420)
T TIGR00054 127 EVGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIP--GFKDVRQQIADIA--GEPMVEILAEREN------------WT 189 (420)
T ss_pred CCCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhhc--ccceEEEEEecCc------------eE
Confidence 3567899999999999999 9999999999999999 5677777666654 5777888776433 11
Q ss_pred EEEeccCCCcccEEEeecCCCCCceEEEeCCCCcccccCCCCCCCEEEEECCeeecccCHHHHHHHHHc-CCCEEEEEEe
Q psy6910 923 VTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKD-SGYCVTLTIG 1001 (1145)
Q Consensus 923 V~l~r~~~~~lG~~l~~~~~~~g~~I~~v~~gs~A~~~G~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~~~~v~L~v~ 1001 (1145)
+.+ .+++.. .....++.|..|.++|||+++| |++||+|++|||+++.++ .++...++. .++.+.+++.
T Consensus 190 l~v------~l~~~~--~~~~~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s~--~dl~~~l~~~~~~~v~l~v~ 258 (420)
T TIGR00054 190 FEV------MKELIP--RGPKIEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRSW--TDFVSAVKENPGKSMDIKVE 258 (420)
T ss_pred ecc------ccccee--cCCCcCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCCceEEEEE
Confidence 111 122221 1122468899999999999999 999999999999999764 566666665 4667888887
Q ss_pred C
Q psy6910 1002 A 1002 (1145)
Q Consensus 1002 r 1002 (1145)
|
T Consensus 259 R 259 (420)
T TIGR00054 259 R 259 (420)
T ss_pred E
Confidence 6
No 41
>KOG0708|consensus
Probab=98.87 E-value=1.1e-09 Score=121.65 Aligned_cols=111 Identities=16% Similarity=0.188 Sum_probs=94.2
Q ss_pred CchHHHHhhhhccCcceeecccccCCCCCCCcCCccEEEeCHHHHHHHHHcCCEEEEEEeCCcccCCCccchhhhhcCCC
Q psy6910 127 GSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGLYEGNHYGTPKPVKEPYVSLPQ 206 (1145)
Q Consensus 127 ~~i~~~l~~~~~~~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~~~~~flE~~~~~g~~YGt~~~~i~~~~~~g~ 206 (1145)
+-|++.|+..+ ++.|..+++||||+. +++|+..++++.|||+++++++||||+..+|+++.++|+
T Consensus 198 d~l~~~Lv~e~-~~kF~~C~~~t~~~~--------------~~eme~~~k~~~fI~~~q~~~~~~~tsv~si~~va~k~~ 262 (359)
T KOG0708|consen 198 DRLLDNLVNEF-PDKFKSCLPETLRPS--------------REEMERDSKEETFIDAGQRSNGLYGTSVASIREVAEKGK 262 (359)
T ss_pred HHHHHHHHHhh-hccccccchhhhccc--------------HHHhhhhcccCceeeecccCCCcceehHHHHHHHhcCCC
Confidence 34666777775 899999999999986 899999999999999999999999999999999999988
Q ss_pred CceeeecCCCChhhhhhhhcccccccceeEecCCChhhhhhhhhccCCCCc
Q psy6910 207 NVNLLPGAHPSSEGKRKRNRSNVEAMASKSIEPDMKTNGFDNKTVNMGNSS 257 (1145)
Q Consensus 207 ~~~~il~~~~~~~~~~~~~~~~~~~~~~ifi~pps~~~l~~rl~~rg~~s~ 257 (1145)
.||||+.. .+.+.+.....+++ +|||.+-|.+.++.+-.++..+.+
T Consensus 263 --HCiLdv~~--~ai~rLq~~~IyPI-vIfIr~ks~~~i~e~~~~~t~~~a 308 (359)
T KOG0708|consen 263 --HCLLDVGG--DAIRRLQRNQIYPI-VIFIRVKSKKQIKERNLKITGEQA 308 (359)
T ss_pred --ceEEecCc--chHHHHHhcceece-EEEEEechHHHHHHHhcccchHHH
Confidence 99999766 56677777777888 999999999888876544443333
No 42
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.82 E-value=1.8e-08 Score=88.32 Aligned_cols=68 Identities=41% Similarity=0.618 Sum_probs=62.2
Q ss_pred ceeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEE
Q psy6910 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEV 519 (1145)
Q Consensus 447 glG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v 519 (1145)
+|||.+.++.+ .+++|.+|.+++||+..| |++||+|++|||.++.++++.++.++|+..+ |..|+|+|
T Consensus 2 ~~G~~~~~~~~---~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTE---GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEV-GEKVTLTV 69 (70)
T ss_pred CccEEEecCCC---CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCC-CCeEEEEE
Confidence 68999998765 369999999999999877 9999999999999999999999999999975 78999987
No 43
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.80 E-value=4.7e-08 Score=88.83 Aligned_cols=82 Identities=43% Similarity=0.643 Sum_probs=72.0
Q ss_pred EEEEEEecccceeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEE
Q psy6910 437 IHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQ 516 (1145)
Q Consensus 437 ~~v~l~k~~~glG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~ 516 (1145)
..+.+.+....|||.+..+... ..+++|..|.+++||++.| |++||+|++|||+.+.++++.++..+++. .+..+.
T Consensus 3 ~~~~~~~~~~~~G~~~~~~~~~-~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~--~~~~~~ 78 (85)
T smart00228 3 RLVELEKGGGGLGFSLVGGKDE-GGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKK--AGGKVT 78 (85)
T ss_pred EEEEEEECCCcccEEEECCCCC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh--CCCeEE
Confidence 5677888778899999887543 2579999999999999999 99999999999999999999999999998 356899
Q ss_pred EEEEeC
Q psy6910 517 LEVCRG 522 (1145)
Q Consensus 517 l~v~R~ 522 (1145)
|++.|.
T Consensus 79 l~i~r~ 84 (85)
T smart00228 79 LTVLRG 84 (85)
T ss_pred EEEEeC
Confidence 999875
No 44
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.77 E-value=5.2e-08 Score=88.08 Aligned_cols=79 Identities=38% Similarity=0.590 Sum_probs=67.8
Q ss_pred EEEEEEec-ccceeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeE
Q psy6910 437 IHSSLVKS-LRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETV 515 (1145)
Q Consensus 437 ~~v~l~k~-~~glG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v 515 (1145)
+.+.+.+. ..+|||.+.++.+. ..+++|..|.+++||++.| |++||+|++|||..+.++++.++..+|+.. +..+
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~-~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~--~~~v 77 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDS-GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNS--GDEV 77 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccC-CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhC--CCeE
Confidence 46778887 67899999987653 4579999999999999877 999999999999999999999999999984 3477
Q ss_pred EEEE
Q psy6910 516 QLEV 519 (1145)
Q Consensus 516 ~l~v 519 (1145)
.|++
T Consensus 78 ~l~v 81 (82)
T cd00992 78 TLTV 81 (82)
T ss_pred EEEE
Confidence 7765
No 45
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.77 E-value=5.7e-08 Score=87.82 Aligned_cols=79 Identities=38% Similarity=0.788 Sum_probs=67.5
Q ss_pred EEEEeecC-CcceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEE
Q psy6910 1034 HAIELSRG-TRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRL 1112 (1145)
Q Consensus 1034 ~~v~l~k~-~~~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~~~v~L 1112 (1145)
+.+.+.+. ..+|||.+...... ..+++|..|.++++|+++| |++||+|++|||.++.+++++++.++|+.....+.|
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~-~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l 79 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDS-GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTL 79 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccC-CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEE
Confidence 35666665 56899999876543 3589999999999999998 999999999999999999999999999987777777
Q ss_pred EE
Q psy6910 1113 LI 1114 (1145)
Q Consensus 1113 ~v 1114 (1145)
++
T Consensus 80 ~v 81 (82)
T cd00992 80 TV 81 (82)
T ss_pred EE
Confidence 76
No 46
>KOG3553|consensus
Probab=98.76 E-value=3.5e-09 Score=94.05 Aligned_cols=86 Identities=29% Similarity=0.352 Sum_probs=73.6
Q ss_pred ccceEEEEEEecc----cc-----eeEEEecCCCC---------CCccEEEEEeccCCcccccCCCCCCCEEEEECCEEc
Q psy6910 433 IGERIHSSLVKSL----RG-----LGFTIVGGDDS---------KEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCV 494 (1145)
Q Consensus 433 ~g~~~~v~l~k~~----~g-----lG~~i~gg~~~---------~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~ 494 (1145)
..-.+.|+|.|.. .| +||.|-||.|. .+.+|||..|.+||||+.+| |+.+|.||.|||-++
T Consensus 13 eclsi~velHK~~~~d~~Gre~l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~Df 91 (124)
T KOG3553|consen 13 ECLSIRVELHKLRDYDQQGRENLILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDF 91 (124)
T ss_pred EEEEEEEEeeeehhhhcCCcEEEEEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCcee
Confidence 3446778888854 45 89999999885 26689999999999999999 999999999999999
Q ss_pred CCCCHHHHHHHHhcCCCCCeEEEEEEeC
Q psy6910 495 LGYTHHDMVSVFQSISPGETVQLEVCRG 522 (1145)
Q Consensus 495 ~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 522 (1145)
.=+||++|++.|++. ..+.|.|.|.
T Consensus 92 TMvTHd~Avk~i~k~---~vl~mLVaR~ 116 (124)
T KOG3553|consen 92 TMVTHDQAVKRITKE---EVLRMLVARQ 116 (124)
T ss_pred EEEEhHHHHHHhhHh---HHHHHHHHhh
Confidence 999999999999983 4677777765
No 47
>KOG3606|consensus
Probab=98.72 E-value=2.4e-08 Score=104.37 Aligned_cols=85 Identities=18% Similarity=0.259 Sum_probs=73.7
Q ss_pred EEEeC-CCCCCCceeeecccc-----CC----CceEEEEecCCccccccCCCCCCcEEEeeCCEEecCCCHHHHHHHHHh
Q psy6910 25 VTLTV-PPDGSLNFSVGGGSD-----SG----EFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGYTRRDTIAWLNH 94 (1145)
Q Consensus 25 ~~~~~-~~~g~~~~~i~gg~e-----~g----~~~~v~~i~~~~~~~~sg~l~~GD~i~evng~~v~g~~~~~~~~~l~~ 94 (1145)
|.++| +.+-+|||-|.-|+. +| --|||.|++.||+|+-.|+|.+.||||||||++|+|||+++|-++|-.
T Consensus 162 VRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvA 241 (358)
T KOG3606|consen 162 VRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVA 241 (358)
T ss_pred eehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhh
Confidence 44553 678899999987653 22 248999999999999999999999999999999999999999999988
Q ss_pred hcCCCCcEEEEEecCCcc
Q psy6910 95 CCRSGKTLTLRTVSSAYV 112 (1145)
Q Consensus 95 ~~~~~~~v~~~~~p~~~~ 112 (1145)
- ...++++|-|+.+.
T Consensus 242 N---shNLIiTVkPANQR 256 (358)
T KOG3606|consen 242 N---SHNLIITVKPANQR 256 (358)
T ss_pred c---ccceEEEecccccc
Confidence 7 89999999998773
No 48
>KOG3551|consensus
Probab=98.71 E-value=4.2e-08 Score=107.35 Aligned_cols=83 Identities=30% Similarity=0.534 Sum_probs=75.4
Q ss_pred cEEEEeec-CCcceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEE
Q psy6910 1033 YHAIELSR-GTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVR 1111 (1145)
Q Consensus 1033 ~~~v~l~k-~~~~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~~~v~ 1111 (1145)
.+.|.+.| +..+||++|.||.++ .++|.|.+|.+|-+|++.+.|..||.|++|||.++.+.+|+|||+.||++|+.|.
T Consensus 85 ~R~V~V~K~d~gGLGISIKGGreN-kMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~ 163 (506)
T KOG3551|consen 85 ERRVRVVKQDAGGLGISIKGGREN-KMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVL 163 (506)
T ss_pred cceeEEEEecCCcceEEeecCccc-CCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceee
Confidence 36677666 446899999999998 9999999999999999999999999999999999999999999999999999988
Q ss_pred EEEEe
Q psy6910 1112 LLIKR 1116 (1145)
Q Consensus 1112 L~v~R 1116 (1145)
|.|+.
T Consensus 164 levKy 168 (506)
T KOG3551|consen 164 LEVKY 168 (506)
T ss_pred eeeee
Confidence 87753
No 49
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.71 E-value=1.5e-07 Score=85.54 Aligned_cols=83 Identities=39% Similarity=0.723 Sum_probs=70.3
Q ss_pred EEEEeecCCcceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEE
Q psy6910 1034 HAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLL 1113 (1145)
Q Consensus 1034 ~~v~l~k~~~~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~~~v~L~ 1113 (1145)
..+.+.+....|||.+...... ..+++|..|.++++|+++| |++||+|++|||..+.++++.++..+++..+..+.|+
T Consensus 3 ~~~~~~~~~~~~G~~~~~~~~~-~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~ 80 (85)
T smart00228 3 RLVELEKGGGGLGFSLVGGKDE-GGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLT 80 (85)
T ss_pred EEEEEEECCCcccEEEECCCCC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 3456666657899998765432 2689999999999999999 9999999999999999999999999999877789999
Q ss_pred EEeCC
Q psy6910 1114 IKRGG 1118 (1145)
Q Consensus 1114 v~R~~ 1118 (1145)
+.|++
T Consensus 81 i~r~~ 85 (85)
T smart00228 81 VLRGG 85 (85)
T ss_pred EEeCC
Confidence 98863
No 50
>PRK08356 hypothetical protein; Provisional
Probab=98.69 E-value=5.5e-09 Score=111.28 Aligned_cols=130 Identities=16% Similarity=0.089 Sum_probs=96.1
Q ss_pred CcEEEEEecCCccCcccchhccccCCCCchHHHHhhhhccCcceeecccccCCCCCCCcCCccEEEeCHHHHHHHHHcCC
Q psy6910 100 KTLTLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGC 179 (1145)
Q Consensus 100 ~~v~~~~~p~~~~~~~~~~~~~l~f~k~~i~~~l~~~~~~~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~~~~~ 179 (1145)
.-+.+.+.|++++ |+++.+.|. .+ + |. .+++++|.++..|.++.+|+|+++++|..++..+.
T Consensus 5 ~~~i~~~G~~gsG-------------K~t~a~~l~-~~--g-~~-~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 66 (195)
T PRK08356 5 KMIVGVVGKIAAG-------------KTTVAKFFE-EK--G-FC-RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTREN 66 (195)
T ss_pred cEEEEEECCCCCC-------------HHHHHHHHH-HC--C-Cc-EEeCCCcccccccccccccccccHHHHhhcccccc
Confidence 3466777888886 899998884 42 3 44 89999999999999999999999999999999999
Q ss_pred EEEEEEeCCcccCCCc---cchhhhhcCCCCceeeecCCCChhhhhhhhc---c-cccccceeEecCCChhhhhhhhhcc
Q psy6910 180 LLESGLYEGNHYGTPK---PVKEPYVSLPQNVNLLPGAHPSSEGKRKRNR---S-NVEAMASKSIEPDMKTNGFDNKTVN 252 (1145)
Q Consensus 180 flE~~~~~g~~YGt~~---~~i~~~~~~g~~~~~il~~~~~~~~~~~~~~---~-~~~~~~~ifi~pps~~~l~~rl~~r 252 (1145)
|+||+++.+++|||+. ..++.+ .... .+++| . ++...+ . ..... .|||.+|. +++.+||.+|
T Consensus 67 ~~e~g~~~~~~yG~~~~~~~~~~~~-~~~~--~ivid--G----~r~~~q~~~l~~~~~~-vi~l~~~~-~~~~~Rl~~R 135 (195)
T PRK08356 67 LIELGRYLKEKYGEDILIRLAVDKK-RNCK--NIAID--G----VRSRGEVEAIKRMGGK-VIYVEAKP-EIRFERLRRR 135 (195)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHh-ccCC--eEEEc--C----cCCHHHHHHHHhcCCE-EEEEECCH-HHHHHHHHhc
Confidence 9999999999999983 333333 2222 34444 3 333222 0 11234 78888886 8899999999
Q ss_pred CCCCcc
Q psy6910 253 MGNSSD 258 (1145)
Q Consensus 253 g~~s~~ 258 (1145)
+++++.
T Consensus 136 ~~~~~~ 141 (195)
T PRK08356 136 GAEKDK 141 (195)
T ss_pred CCcccc
Confidence 876443
No 51
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.67 E-value=1.9e-08 Score=72.82 Aligned_cols=30 Identities=37% Similarity=0.994 Sum_probs=28.6
Q ss_pred CCCCcEEEEccC-CceEeeeCCCCceeccCC
Q psy6910 296 LPPRWEKAYTEK-GEVYFIDHNSSTSSWLDP 325 (1145)
Q Consensus 296 LP~gWe~~~~~~-Gr~yyidh~t~tT~W~~P 325 (1145)
||+||+++++++ |++||+|+.|++|+|++|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 899999999876 999999999999999998
No 52
>KOG3651|consensus
Probab=98.65 E-value=7.4e-08 Score=102.12 Aligned_cols=80 Identities=29% Similarity=0.380 Sum_probs=71.4
Q ss_pred EEEEEecccc-eeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEE
Q psy6910 438 HSSLVKSLRG-LGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQ 516 (1145)
Q Consensus 438 ~v~l~k~~~g-lG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~ 516 (1145)
.|.|.|+..+ +||+|-||..- -..+||..|+.+.||+++|+|+.||.|+.|||++|.|.|.-+|.+|++.. -..|+
T Consensus 7 ~v~ltKD~~nliGISIGGGapy-CPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~--~~eV~ 83 (429)
T KOG3651|consen 7 TVELTKDEKNLIGISIGGGAPY-CPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVS--LNEVK 83 (429)
T ss_pred cEEEeeccccceeEEecCCCCc-CCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHh--ccceE
Confidence 5889998877 69999998665 55799999999999999999999999999999999999999999999984 45788
Q ss_pred EEEE
Q psy6910 517 LEVC 520 (1145)
Q Consensus 517 l~v~ 520 (1145)
+...
T Consensus 84 IhyN 87 (429)
T KOG3651|consen 84 IHYN 87 (429)
T ss_pred EEeh
Confidence 7763
No 53
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.64 E-value=1.2e-07 Score=85.96 Aligned_cols=71 Identities=39% Similarity=0.616 Sum_probs=61.1
Q ss_pred ceeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEEEeC
Q psy6910 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522 (1145)
Q Consensus 447 glG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 522 (1145)
+||+.+..-.+ ..+++|.+|.++|||+++| |++||+|++|||..+. +..+...+|...+.|+.|+|+|.|+
T Consensus 2 ~lGv~~~~~~~--~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~~~~g~~v~l~v~R~ 72 (82)
T PF13180_consen 2 GLGVTVQNLSD--TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVN--SSEDLVNILSKGKPGDTVTLTVLRD 72 (82)
T ss_dssp E-SEEEEECSC--SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESS--SHHHHHHHHHCSSTTSEEEEEEEET
T ss_pred EECeEEEEccC--CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEEC
Confidence 57888877644 3469999999999999999 9999999999999995 6688889998888999999999997
No 54
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.63 E-value=1.6e-07 Score=82.20 Aligned_cols=67 Identities=39% Similarity=0.698 Sum_probs=59.3
Q ss_pred ceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEE
Q psy6910 1044 GFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGD-STVRLLI 1114 (1145)
Q Consensus 1044 ~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~-~~v~L~v 1114 (1145)
.+||.+....+ .+++|..|.++++|+.+| |++||+|++|||.++.+++++++.++|+... ..+.|++
T Consensus 2 ~~G~~~~~~~~---~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTE---GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCC---CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 57898887543 379999999999999999 9999999999999999999999999999876 5688876
No 55
>KOG3553|consensus
Probab=98.59 E-value=5e-08 Score=86.81 Aligned_cols=73 Identities=30% Similarity=0.626 Sum_probs=63.2
Q ss_pred ceeEEEEccCCc---------ccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEE
Q psy6910 1044 GFGFSIRGGREF---------QNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLI 1114 (1145)
Q Consensus 1044 ~lG~sl~gg~~~---------~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~~~v~L~v 1114 (1145)
.+||.+.||.+. .+.++||.+|.+||||+.+| |+.+|.|++|||.++.=++|++|+..|++. ..+.+.|
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k~-~vl~mLV 113 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITKE-EVLRMLV 113 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhHh-HHHHHHH
Confidence 489999998863 36799999999999999999 999999999999999988999999999983 4466666
Q ss_pred EeCC
Q psy6910 1115 KRGG 1118 (1145)
Q Consensus 1115 ~R~~ 1118 (1145)
.|.+
T Consensus 114 aR~~ 117 (124)
T KOG3553|consen 114 ARQS 117 (124)
T ss_pred Hhhc
Confidence 6644
No 56
>KOG3571|consensus
Probab=98.58 E-value=1.5e-07 Score=106.49 Aligned_cols=90 Identities=22% Similarity=0.381 Sum_probs=76.2
Q ss_pred ccceEEEEEEecccc-eeEEEecCCCC-CCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCC
Q psy6910 433 IGERIHSSLVKSLRG-LGFTIVGGDDS-KEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSIS 510 (1145)
Q Consensus 433 ~g~~~~v~l~k~~~g-lG~~i~gg~~~-~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~ 510 (1145)
.=.+++|.|.-+.-. |||+|+|-.+. .+++|||.+|.++|+.++||||.+||.||.||.+++.+++.+|||.+|+.+-
T Consensus 247 slnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV 326 (626)
T KOG3571|consen 247 SLNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAV 326 (626)
T ss_pred ceeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHh
Confidence 336788888887765 99999994442 2668999999999999999999999999999999999999999999999752
Q ss_pred CC-CeEEEEEEeC
Q psy6910 511 PG-ETVQLEVCRG 522 (1145)
Q Consensus 511 ~g-~~v~l~v~R~ 522 (1145)
.. ..++|+|...
T Consensus 327 ~~~gPi~ltvAk~ 339 (626)
T KOG3571|consen 327 SRPGPIKLTVAKC 339 (626)
T ss_pred ccCCCeEEEEeec
Confidence 22 2599999776
No 57
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.56 E-value=3.2e-07 Score=83.17 Aligned_cols=72 Identities=28% Similarity=0.494 Sum_probs=59.1
Q ss_pred ceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCc
Q psy6910 1044 GFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRN--GDSTVRLLIKRGGSV 1120 (1145)
Q Consensus 1044 ~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~--~~~~v~L~v~R~~~~ 1120 (1145)
.+|+.+....+ ..+++|..|.++|||+++| |++||+|++|||..+. +..++..+|.. .+.++.|++.|++..
T Consensus 2 ~lGv~~~~~~~--~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~~~~g~~v~l~v~R~g~~ 75 (82)
T PF13180_consen 2 GLGVTVQNLSD--TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVN--SSEDLVNILSKGKPGDTVTLTVLRDGEE 75 (82)
T ss_dssp E-SEEEEECSC--SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESS--SHHHHHHHHHCSSTTSEEEEEEEETTEE
T ss_pred EECeEEEEccC--CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 46777766432 3489999999999999999 9999999999999997 78999999964 456799999998764
No 58
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.50 E-value=1.2e-07 Score=69.36 Aligned_cols=31 Identities=35% Similarity=0.950 Sum_probs=29.9
Q ss_pred CCCCcEEEEccCCceEeeeCCCCceeccCCc
Q psy6910 296 LPPRWEKAYTEKGEVYFIDHNSSTSSWLDPR 326 (1145)
Q Consensus 296 LP~gWe~~~~~~Gr~yyidh~t~tT~W~~Pr 326 (1145)
||.+|++..+.+|++||+|+.|+.++|++|+
T Consensus 1 lp~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 1 LPPGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 7999999999999999999999999999995
No 59
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.49 E-value=6.5e-07 Score=81.59 Aligned_cols=71 Identities=34% Similarity=0.584 Sum_probs=62.3
Q ss_pred cceeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEEEeC
Q psy6910 446 RGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522 (1145)
Q Consensus 446 ~glG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 522 (1145)
.|||+.+.... ..++|..|.+++||++.| |++||+|++|||+.+.+.++.++..+++.. .|..+.|++.|.
T Consensus 2 ~~lG~~~~~~~----~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~-~~~~i~l~v~r~ 72 (85)
T cd00988 2 GGIGLELKYDD----GGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGK-AGTKVRLTLKRG 72 (85)
T ss_pred eEEEEEEEEcC----CeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCC-CCCEEEEEEEcC
Confidence 47899887543 359999999999999988 999999999999999999999999999874 478999999875
No 60
>KOG1892|consensus
Probab=98.46 E-value=3.3e-07 Score=109.49 Aligned_cols=90 Identities=21% Similarity=0.506 Sum_probs=79.1
Q ss_pred CCcccEEEEeecCCcceeEEEEccCCc--ccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC
Q psy6910 1029 HDEQYHAIELSRGTRGFGFSIRGGREF--QNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNG 1106 (1145)
Q Consensus 1029 ~~~~~~~v~l~k~~~~lG~sl~gg~~~--~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~ 1106 (1145)
...++..|+|.|. .+.|++|..-+.. ...||||++|.+||+|+.+|||..||++|.|||+++-|.+.+.|.++|.+.
T Consensus 930 ~~pei~~vtL~Kn-nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrt 1008 (1629)
T KOG1892|consen 930 KEPEIITVTLKKN-NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRT 1008 (1629)
T ss_pred cCCceEEEEEecc-CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhcc
Confidence 3466889999988 8899998654432 267999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEeCCC
Q psy6910 1107 DSTVRLLIKRGGS 1119 (1145)
Q Consensus 1107 ~~~v~L~v~R~~~ 1119 (1145)
+..|+|.|...+.
T Consensus 1009 g~vV~leVaKqgA 1021 (1629)
T KOG1892|consen 1009 GNVVHLEVAKQGA 1021 (1629)
T ss_pred CCeEEEehhhhhh
Confidence 9999999976544
No 61
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.38 E-value=1.9e-06 Score=78.53 Aligned_cols=69 Identities=30% Similarity=0.596 Sum_probs=59.6
Q ss_pred ceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeC
Q psy6910 1044 GFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNG-DSTVRLLIKRG 1117 (1145)
Q Consensus 1044 ~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~-~~~v~L~v~R~ 1117 (1145)
+||+.+... ..+++|..|.++++|+++| |++||+|++|||..+.++++.++..+++.. +..+.|++.|+
T Consensus 3 ~lG~~~~~~----~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 3 GIGLELKYD----DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred EEEEEEEEc----CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 578887643 3579999999999999999 999999999999999988779999999764 56799999987
No 62
>KOG1891|consensus
Probab=98.36 E-value=3e-07 Score=93.76 Aligned_cols=64 Identities=25% Similarity=0.249 Sum_probs=53.8
Q ss_pred CCCCCCCceeeeCCCCceEEEeCCCceeeCcCCccccccCCCCCCCCCCCCCCCc-ccCCCCcccCCCCCCCcccc
Q psy6910 339 DDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQAKHRDQGAGPSEMDDNEHK-VKDSPGKRIAPQARNTLVST 413 (1145)
Q Consensus 339 ~~~LP~gWe~~~~~~g~~yyinh~~k~t~~~~P~~~~~~~~~~~~~~~~~p~~w~-~~~~~g~~~~~~h~~~~~s~ 413 (1145)
+-+||+||...++..|+.|||||++++|.|.||.. .+.||+||+ .....--.||.++-...+++
T Consensus 91 dlPLPpgWav~~T~~grkYYIDHn~~tTHW~HPle-----------rEgLppGW~rv~s~e~GtyY~~~~~k~tQy 155 (271)
T KOG1891|consen 91 DLPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLE-----------REGLPPGWKRVFSPEKGTYYYHEEMKRTQY 155 (271)
T ss_pred cCCCCCCcceeeEecCceeEeecCCCcccccChhh-----------hccCCcchhhccccccceeeeecccchhhh
Confidence 34899999999999999999999999999999953 367999999 66666667777777777665
No 63
>KOG3651|consensus
Probab=98.35 E-value=1.3e-06 Score=92.86 Aligned_cols=83 Identities=16% Similarity=0.247 Sum_probs=78.3
Q ss_pred EeEEEeCCCCCCCceeeeccccCCCceEEEEecCCccccccCCCCCCcEEEeeCCEEecCCCHHHHHHHHHhhcCCCCcE
Q psy6910 23 TPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGYTRRDTIAWLNHCCRSGKTL 102 (1145)
Q Consensus 23 ~~~~~~~~~~g~~~~~i~gg~e~g~~~~v~~i~~~~~~~~sg~l~~GD~i~evng~~v~g~~~~~~~~~l~~~~~~~~~v 102 (1145)
..|++.+++.+-+|+.|+||+-.=-.++|..|..+..|.+.|.|..||+|+.|||++|.|+|.-+|.++|+.+ .+.|
T Consensus 6 ~~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~---~~eV 82 (429)
T KOG3651|consen 6 ETVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVS---LNEV 82 (429)
T ss_pred CcEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHh---ccce
Confidence 4678899999999999999999988889999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEec
Q psy6910 103 TLRTVS 108 (1145)
Q Consensus 103 ~~~~~p 108 (1145)
++..-.
T Consensus 83 ~IhyNK 88 (429)
T KOG3651|consen 83 KIHYNK 88 (429)
T ss_pred EEEehh
Confidence 987654
No 64
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.34 E-value=5e-07 Score=65.38 Aligned_cols=30 Identities=43% Similarity=0.858 Sum_probs=28.3
Q ss_pred CCCCceeeeCCC-CceEEEeCCCceeeCcCC
Q psy6910 342 LPYGWERIDDPA-YGTYYIDHVNKQTQYENP 371 (1145)
Q Consensus 342 LP~gWe~~~~~~-g~~yyinh~~k~t~~~~P 371 (1145)
||+||++.++++ |++||+|+.|++++|++|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 799999999875 999999999999999998
No 65
>KOG1421|consensus
Probab=98.33 E-value=0.0029 Score=75.00 Aligned_cols=58 Identities=29% Similarity=0.607 Sum_probs=49.6
Q ss_pred ccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEEEeCC
Q psy6910 461 EFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGY 523 (1145)
Q Consensus 461 ~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 523 (1145)
+-+.|+.|.++|||+ ..|++||.+++||++++. ...++-++|..- .|+.+.|+|.|+.
T Consensus 303 gmLvV~~vL~~gpa~--k~Le~GDillavN~t~l~--df~~l~~iLDeg-vgk~l~LtI~Rgg 360 (955)
T KOG1421|consen 303 GMLVVETVLPEGPAE--KKLEPGDILLAVNSTCLN--DFEALEQILDEG-VGKNLELTIQRGG 360 (955)
T ss_pred eeEEEEEeccCCchh--hccCCCcEEEEEcceehH--HHHHHHHHHhhc-cCceEEEEEEeCC
Confidence 358999999999996 569999999999999887 456777778764 7999999999983
No 66
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.28 E-value=8e-07 Score=64.50 Aligned_cols=30 Identities=43% Similarity=1.142 Sum_probs=28.8
Q ss_pred CCCcEEEEccCCceEeeeCCCCceeccCCc
Q psy6910 297 PPRWEKAYTEKGEVYFIDHNSSTSSWLDPR 326 (1145)
Q Consensus 297 P~gWe~~~~~~Gr~yyidh~t~tT~W~~Pr 326 (1145)
|++|++..+.+|++||+|+.|+.|+|++|+
T Consensus 1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 789999999999999999999999999996
No 67
>KOG3938|consensus
Probab=98.26 E-value=9.6e-07 Score=92.53 Aligned_cols=88 Identities=22% Similarity=0.349 Sum_probs=80.1
Q ss_pred CcCccceEEEEEEecccceeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcC
Q psy6910 430 DELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSI 509 (1145)
Q Consensus 430 ~~~~g~~~~v~l~k~~~glG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~ 509 (1145)
+..+|+..+|++.|+...||++|..+. -+..||+.|.++|.-++--.+++||.|-+|||.++.|+.|+||..+||.+
T Consensus 121 AHvkGq~kEv~v~KsedalGlTITDNG---~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel 197 (334)
T KOG3938|consen 121 AHVKGQAKEVEVVKSEDALGLTITDNG---AGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKEL 197 (334)
T ss_pred hhhcCcceeEEEEecccccceEEeeCC---cceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhc
Confidence 346899999999999999999998753 33699999999999998888999999999999999999999999999999
Q ss_pred CCCCeEEEEEE
Q psy6910 510 SPGETVQLEVC 520 (1145)
Q Consensus 510 ~~g~~v~l~v~ 520 (1145)
+.|+..+|.+.
T Consensus 198 ~rge~ftlrLi 208 (334)
T KOG3938|consen 198 PRGETFTLRLI 208 (334)
T ss_pred ccCCeeEEEee
Confidence 99999888764
No 68
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.25 E-value=4.1e-06 Score=75.37 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=54.3
Q ss_pred cccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCc
Q psy6910 1057 NMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNG--DSTVRLLIKRGGSV 1120 (1145)
Q Consensus 1057 ~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~--~~~v~L~v~R~~~~ 1120 (1145)
..+++|..|.++++|+++| |++||+|++|||..+. +++++..+|... +..+.|++.|+++.
T Consensus 9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g~~ 71 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPSTTK 71 (79)
T ss_pred CCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECCEE
Confidence 4578999999999999999 9999999999999998 789999999874 56799999998753
No 69
>KOG3571|consensus
Probab=98.23 E-value=3.6e-06 Score=95.56 Aligned_cols=90 Identities=24% Similarity=0.453 Sum_probs=75.0
Q ss_pred CcccEEEEeecCCcc-eeEEEEccCCc-ccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-
Q psy6910 1030 DEQYHAIELSRGTRG-FGFSIRGGREF-QNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNG- 1106 (1145)
Q Consensus 1030 ~~~~~~v~l~k~~~~-lG~sl~gg~~~-~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~- 1106 (1145)
...+.+|.|.-+.-. ||++|.|-.+. ++.+|||.+|+++|+.+.+|||.+||.||+||..++.+|+-.|||..|+.+
T Consensus 247 slnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV 326 (626)
T KOG3571|consen 247 SLNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAV 326 (626)
T ss_pred ceeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHh
Confidence 345677777655444 99999985532 477999999999999999999999999999999999999999999999973
Q ss_pred --CCeEEEEEEeCCC
Q psy6910 1107 --DSTVRLLIKRGGS 1119 (1145)
Q Consensus 1107 --~~~v~L~v~R~~~ 1119 (1145)
.++++|+|...-+
T Consensus 327 ~~~gPi~ltvAk~~D 341 (626)
T KOG3571|consen 327 SRPGPIKLTVAKCWD 341 (626)
T ss_pred ccCCCeEEEEeeccC
Confidence 4569999876444
No 70
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.21 E-value=6.7e-06 Score=73.71 Aligned_cols=68 Identities=28% Similarity=0.542 Sum_probs=56.2
Q ss_pred eeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCeEEEEEEeCCC
Q psy6910 1045 FGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNG-DSTVRLLIKRGGS 1119 (1145)
Q Consensus 1045 lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~-~~~v~L~v~R~~~ 1119 (1145)
+||..... ..+++|..|.++++|+++| |++||+|++|||.++. +++++..+|+.. +..+.|++.|++.
T Consensus 3 ~~~~~g~~----~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~~~~l~v~r~~~ 71 (79)
T cd00989 3 LGFVPGGP----PIEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVERNGE 71 (79)
T ss_pred eeEeccCC----ccCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHHCCCceEEEEEEECCE
Confidence 56654332 3358899999999999999 9999999999999998 778898888875 4578999988764
No 71
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.15 E-value=2.4e-06 Score=62.48 Aligned_cols=31 Identities=48% Similarity=0.907 Sum_probs=29.8
Q ss_pred CCCCceeeeCCCCceEEEeCCCceeeCcCCc
Q psy6910 342 LPYGWERIDDPAYGTYYIDHVNKQTQYENPV 372 (1145)
Q Consensus 342 LP~gWe~~~~~~g~~yyinh~~k~t~~~~P~ 372 (1145)
||.||++..++.|+.||+|+.|++++|++|+
T Consensus 1 lp~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 1 LPPGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 6999999999999999999999999999996
No 72
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.14 E-value=4.4e-06 Score=98.18 Aligned_cols=82 Identities=24% Similarity=0.441 Sum_probs=73.4
Q ss_pred eEEEEEEecccceeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeE
Q psy6910 436 RIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETV 515 (1145)
Q Consensus 436 ~~~v~l~k~~~glG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v 515 (1145)
.+...+.....|+|+.+.-..+ ..+.|.++++++||++.| |++||+|+.|||.++.+++..+|+..|+.. .|..|
T Consensus 90 ~~~~~~~~~~~GiG~~i~~~~~---~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~-~Gt~V 164 (406)
T COG0793 90 EFRTDTSGEFGGIGIELQMEDI---GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGK-PGTKV 164 (406)
T ss_pred HhhhhccccccceeEEEEEecC---CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCC-CCCeE
Confidence 4566666778899999988652 459999999999999999 999999999999999999999999999995 69999
Q ss_pred EEEEEeC
Q psy6910 516 QLEVCRG 522 (1145)
Q Consensus 516 ~l~v~R~ 522 (1145)
+|++.|.
T Consensus 165 ~L~i~r~ 171 (406)
T COG0793 165 TLTILRA 171 (406)
T ss_pred EEEEEEc
Confidence 9999995
No 73
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.11 E-value=1e-05 Score=72.80 Aligned_cols=65 Identities=32% Similarity=0.418 Sum_probs=51.7
Q ss_pred eeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEEEeC
Q psy6910 448 LGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522 (1145)
Q Consensus 448 lG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 522 (1145)
||+.+... +..+.|..|.+++||++.| |++||+|++|||..+.. ..++++....|..+.|++.|+
T Consensus 3 ~G~~~~~~----~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~-----~~~~l~~~~~~~~v~l~v~r~ 67 (80)
T cd00990 3 LGLTLDKE----EGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA-----LQDRLKEYQAGDPVELTVFRD 67 (80)
T ss_pred ccEEEEcc----CCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH-----HHHHHHhcCCCCEEEEEEEEC
Confidence 56666433 2359999999999999999 99999999999999875 334555544678999999886
No 74
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.09 E-value=1.3e-05 Score=72.01 Aligned_cols=60 Identities=27% Similarity=0.388 Sum_probs=53.1
Q ss_pred CccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEEEeC
Q psy6910 460 EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522 (1145)
Q Consensus 460 ~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 522 (1145)
..++.|.+|.+++||++.| |++||+|++|||..+. +..++..+|+....|..+.|++.|+
T Consensus 9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~ 68 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPS 68 (79)
T ss_pred CCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEEC
Confidence 3469999999999999988 9999999999999998 5578888998765688999999886
No 75
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.07 E-value=1.4e-05 Score=71.82 Aligned_cols=68 Identities=22% Similarity=0.365 Sum_probs=53.0
Q ss_pred eeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Q psy6910 1045 FGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSV 1120 (1145)
Q Consensus 1045 lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~~~v~L~v~R~~~~ 1120 (1145)
+|+.+... ..++.|..|.++|+|+++| |++||+|++|||..+.+ +.+++..++ .+..+.|++.|++..
T Consensus 3 ~G~~~~~~----~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~l~~~~-~~~~v~l~v~r~g~~ 70 (80)
T cd00990 3 LGLTLDKE----EGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQDRLKEYQ-AGDPVELTVFRDDRL 70 (80)
T ss_pred ccEEEEcc----CCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHHHHHhcC-CCCEEEEEEEECCEE
Confidence 56766432 3468999999999999999 99999999999999974 555544432 456799999987753
No 76
>KOG3606|consensus
Probab=98.04 E-value=1.5e-05 Score=83.99 Aligned_cols=87 Identities=24% Similarity=0.450 Sum_probs=74.2
Q ss_pred cccEEEEeecCC--cceeEEEEccCCc--------ccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHH
Q psy6910 1031 EQYHAIELSRGT--RGFGFSIRGGREF--------QNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAI 1100 (1145)
Q Consensus 1031 ~~~~~v~l~k~~--~~lG~sl~gg~~~--------~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav 1100 (1145)
...+.|.|.|.+ ..|||-|+.|... ...||||.++.|||.|+..|.|.+.|++|+|||..|.|.+.+++.
T Consensus 157 EtHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVT 236 (358)
T KOG3606|consen 157 ETHRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVT 236 (358)
T ss_pred hhhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHH
Confidence 345678887754 4799999887632 246899999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEEEEEeC
Q psy6910 1101 EIIRNGDSTVRLLIKRG 1117 (1145)
Q Consensus 1101 ~~lk~~~~~v~L~v~R~ 1117 (1145)
++|-+....+.++|+..
T Consensus 237 DMMvANshNLIiTVkPA 253 (358)
T KOG3606|consen 237 DMMVANSHNLIITVKPA 253 (358)
T ss_pred HHHhhcccceEEEeccc
Confidence 99998877788888643
No 77
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.01 E-value=2.3e-05 Score=70.21 Aligned_cols=67 Identities=34% Similarity=0.487 Sum_probs=54.8
Q ss_pred eeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEEEeC
Q psy6910 448 LGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522 (1145)
Q Consensus 448 lG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 522 (1145)
|||..-... ..+.|..|.+++||++.| |++||+|++|||..+. +..++..+|+... +..+.|++.|+
T Consensus 3 ~~~~~g~~~----~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~--~~~~~~~~l~~~~-~~~~~l~v~r~ 69 (79)
T cd00989 3 LGFVPGGPP----IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIK--SWEDLVDAVQENP-GKPLTLTVERN 69 (79)
T ss_pred eeEeccCCc----cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHHCC-CceEEEEEEEC
Confidence 566543332 248999999999999988 9999999999999998 4578888888753 77899999886
No 78
>KOG4371|consensus
Probab=98.00 E-value=1.8e-05 Score=96.62 Aligned_cols=179 Identities=23% Similarity=0.344 Sum_probs=129.2
Q ss_pred ccceEEEEEEecccceeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCC
Q psy6910 433 IGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPG 512 (1145)
Q Consensus 433 ~g~~~~v~l~k~~~glG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g 512 (1145)
-...+.+++.+....||..++.-... +.|+...-.+.-.+ -.|+.||.|+.|||+.+.+.-|.+|+.+++. .|
T Consensus 1145 ~p~~i~~~~~r~~~~l~~~~a~~~~~----~~~~~~~~~~~~~~-pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~--~~ 1217 (1332)
T KOG4371|consen 1145 GPRVIDVELDRNEGSLGVQIASLSGR----VCIKQLTSEPAISH-PDIRVGDVLLYVNGIAVEGKVHQEVVAMLRG--GG 1217 (1332)
T ss_pred CCccccccCCCCCCCCCceeccCccc----eehhhcccCCCCCC-CCcchhhhhhhccceeeechhhHHHHHHHhc--cC
Confidence 33567888888888899988765333 67777666655544 3499999999999999999999999999999 79
Q ss_pred CeEEEEEEeCCCCCCCCCCCCCcceecccccCCCCCCCCCccccccCCcCCCCCCCCCCCCCCcccccccCCCCCccccc
Q psy6910 513 ETVQLEVCRGYPLPFDPNDPNTEVVTTVAVNAPDLDNGSDRHLYMSANDFTDQSVKSMPDLYTSEKMVKLERPSSTDLIL 592 (1145)
Q Consensus 513 ~~v~l~v~R~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (1145)
+.|.|-|.|..+.-.| +++-+ . +. .
T Consensus 1218 ~~~~~~~~r~~~~~~d------------------------~~~~s-~----------------------~~----~---- 1242 (1332)
T KOG4371|consen 1218 DRVVLGVQRPPPAYSD------------------------QHHAS-S----------------------TS----A---- 1242 (1332)
T ss_pred ceEEEEeecCCccccc------------------------chhhh-h----------------------hc----c----
Confidence 9999999887432111 01000 0 00 0
Q ss_pred cCCccEEEEEEecCCC-CcceEEeccC--CcceEEEeec---ccccCCCCCCCEEEEECCEecCCCCHHHHHHHHhcCCC
Q psy6910 593 ESDSEYLTIPIVKGAM-GFGFTIADSS--HGQKVKKILD---RQRCKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQR 666 (1145)
Q Consensus 593 ~~~~~~~~v~l~k~~~-glG~~i~~~~--~g~~V~~i~~---a~~~g~L~~GD~Il~INg~~v~~~s~~ea~~~Lk~~~~ 666 (1145)
..-++.|.+.|.+. |+|+.++... .|+++..|-. |.-.+.|++||+++..+|.++.+.+-.+...-|+ . .
T Consensus 1243 --~~~l~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~-~-v 1318 (1332)
T KOG4371|consen 1243 --SAPLISVMLLKKPMATLGLSLAKRTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLK-L-V 1318 (1332)
T ss_pred --cchhhhheeeecccccccccccccCcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhh-h-c
Confidence 12234567776664 8999997544 3677766654 5556799999999999999999998877777777 3 3
Q ss_pred CceEEEEEEcC
Q psy6910 667 NLEANIIVQRS 677 (1145)
Q Consensus 667 g~~v~L~v~R~ 677 (1145)
.+.|.+++.|.
T Consensus 1319 ~~p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1319 QGPVQITVTRE 1329 (1332)
T ss_pred cCchhheehhh
Confidence 46788888775
No 79
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=97.98 E-value=7.7e-06 Score=59.30 Aligned_cols=30 Identities=47% Similarity=0.841 Sum_probs=28.8
Q ss_pred CCCceeeeCCCCceEEEeCCCceeeCcCCc
Q psy6910 343 PYGWERIDDPAYGTYYIDHVNKQTQYENPV 372 (1145)
Q Consensus 343 P~gWe~~~~~~g~~yyinh~~k~t~~~~P~ 372 (1145)
|.||+...+..|++||+|+.+++++|++|+
T Consensus 1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 689999999999999999999999999996
No 80
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.95 E-value=1.3e-05 Score=98.98 Aligned_cols=75 Identities=33% Similarity=0.544 Sum_probs=64.0
Q ss_pred ecccceeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECC-----EEcCCCCHHHHHHHHhcCCCCCeEEE
Q psy6910 443 KSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVND-----KCVLGYTHHDMVSVFQSISPGETVQL 517 (1145)
Q Consensus 443 k~~~glG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg-----~~~~~~~~~~~~~~l~~~~~g~~v~l 517 (1145)
....|+|+.+.-.. ..++|.+|+|||||++++.|++||+|++||+ +++.|++..+++.+|++ +.|..|+|
T Consensus 241 ~~~~GIGa~l~~~~----~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG-~~Gt~V~L 315 (667)
T PRK11186 241 LSLEGIGAVLQMDD----DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKG-PKGSKVRL 315 (667)
T ss_pred CceeEEEEEEEEeC----CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcC-CCCCEEEE
Confidence 34568999886532 3599999999999999855999999999994 47789999999999998 57999999
Q ss_pred EEEeC
Q psy6910 518 EVCRG 522 (1145)
Q Consensus 518 ~v~R~ 522 (1145)
+|.|.
T Consensus 316 tV~r~ 320 (667)
T PRK11186 316 EILPA 320 (667)
T ss_pred EEEeC
Confidence 99884
No 81
>KOG4371|consensus
Probab=97.95 E-value=2.2e-05 Score=95.86 Aligned_cols=180 Identities=22% Similarity=0.373 Sum_probs=129.0
Q ss_pred eEEEEeccCCCcccEEEeecCCCCCceEEEeCCCCcccccCCCCCCCEEEEECCeeecccCHHHHHHHHHcCCCEEEEEE
Q psy6910 921 YDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000 (1145)
Q Consensus 921 ~~V~l~r~~~~~lG~~l~~~~~~~g~~I~~v~~gs~A~~~G~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~L~v 1000 (1145)
+.+++.|++ ..||..+..... ...|+.....+.-.+-. |++||.++.|||+.+...-+.+++.+++..++.|.|-|
T Consensus 1149 i~~~~~r~~-~~l~~~~a~~~~--~~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~ 1224 (1332)
T KOG4371|consen 1149 IDVELDRNE-GSLGVQIASLSG--RVCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGV 1224 (1332)
T ss_pred ccccCCCCC-CCCCceeccCcc--ceehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhccCceEEEEe
Confidence 344554544 678877765433 34455554433333444 99999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCcccCccCCCCCCCCCCCCcccEEEEeecCC-cceeEEEEccCCcccccEEEEEEcCCChhcccCCCCC
Q psy6910 1001 GAPISGDDASSTTSVSAASHREYEEGGEHDEQYHAIELSRGT-RGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKV 1079 (1145)
Q Consensus 1001 ~r~~~~~~~~~~~s~~~~~~~~~p~~~~~~~~~~~v~l~k~~-~~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~ 1079 (1145)
.|+++........+. .....-...+.+.+.+ .++|+++..-.. ..++||..+..++.|.-.|.+++
T Consensus 1225 ~r~~~~~~d~~~~s~-----------~~~~~~l~~~~~~~~p~~~~~~~~~~~~~--s~~~~~~~~~~~~~a~~~~~~r~ 1291 (1332)
T KOG4371|consen 1225 QRPPPAYSDQHHASS-----------TSASAPLISVMLLKKPMATLGLSLAKRTM--SDGIFIRNIAQDSAASSEGTLRV 1291 (1332)
T ss_pred ecCCcccccchhhhh-----------hcccchhhhheeeecccccccccccccCc--CCceeeecccccccccccccccc
Confidence 887654322100000 0011223444444444 578888765432 56899999999999999999999
Q ss_pred CCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy6910 1080 GDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRG 1117 (1145)
Q Consensus 1080 GD~Il~ING~~v~~~s~~eav~~lk~~~~~v~L~v~R~ 1117 (1145)
||+++..+|+++.+.+..+..+.++---+.+.+++.|.
T Consensus 1292 g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1292 GDRLVSLDGEPVDGFTPATILEKLKLVQGPVQITVTRE 1329 (1332)
T ss_pred cceeeccCCccCCCCChHHHHHHhhhccCchhheehhh
Confidence 99999999999999998888888886667788888764
No 82
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.94 E-value=3.6e-05 Score=69.12 Aligned_cols=59 Identities=34% Similarity=0.491 Sum_probs=51.3
Q ss_pred ccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCc
Q psy6910 1058 MALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRN--GDSTVRLLIKRGGSV 1120 (1145)
Q Consensus 1058 ~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~--~~~~v~L~v~R~~~~ 1120 (1145)
.+++|..|.++++|+. | |++||+|++|||..+. +++++..+|+. .+..+.|++.|++..
T Consensus 8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~g~~ 68 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKREEKE 68 (79)
T ss_pred cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 4689999999999986 8 9999999999999998 78899999985 356799999998754
No 83
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.93 E-value=3.6e-05 Score=70.81 Aligned_cols=60 Identities=32% Similarity=0.458 Sum_probs=52.6
Q ss_pred ccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCc
Q psy6910 1058 MALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNG--DSTVRLLIKRGGSV 1120 (1145)
Q Consensus 1058 ~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~--~~~v~L~v~R~~~~ 1120 (1145)
.+++|..|.++++|+++| |++||+|++|||..+. ++.++.+++... +..+.|.+.|++..
T Consensus 24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~--~~~~~~~~l~~~~~~~~i~l~v~r~g~~ 85 (90)
T cd00987 24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVK--SVADLRRALAELKPGDKVTLTVLRGGKE 85 (90)
T ss_pred CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 479999999999999999 9999999999999998 677888888765 56799999988743
No 84
>KOG3552|consensus
Probab=97.93 E-value=9.1e-06 Score=97.80 Aligned_cols=77 Identities=29% Similarity=0.559 Sum_probs=66.4
Q ss_pred cEEEEeecCCcceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEE
Q psy6910 1033 YHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRL 1112 (1145)
Q Consensus 1033 ~~~v~l~k~~~~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~~~v~L 1112 (1145)
.+.|.+.+. ..|||.+..| .+++|..|.+|||+. |+|++||+||+|||++|+..+++.++++++.+...|.|
T Consensus 56 pr~vq~~r~-~~lGFgfvag-----rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~l 127 (1298)
T KOG3552|consen 56 PRQVQLQRN-ASLGFGFVAG-----RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNL 127 (1298)
T ss_pred chhhhhhcc-ccccceeecC-----CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcce
Confidence 566666665 3566666654 489999999999995 88999999999999999999999999999999999999
Q ss_pred EEEeC
Q psy6910 1113 LIKRG 1117 (1145)
Q Consensus 1113 ~v~R~ 1117 (1145)
+|++.
T Consensus 128 tV~qP 132 (1298)
T KOG3552|consen 128 TVCQP 132 (1298)
T ss_pred EEecc
Confidence 99984
No 85
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=97.92 E-value=3e-06 Score=94.32 Aligned_cols=70 Identities=21% Similarity=0.558 Sum_probs=57.0
Q ss_pred CCcEEEEccCCceEeeeCCCCceeccCCcc-hhcccccccCCCCCC-CCCceeeeCCCCceEEEeCCCceeeCcCCccc
Q psy6910 298 PRWEKAYTEKGEVYFIDHNSSTSSWLDPRL-CKFQKKLEDCSDDEL-PYGWERIDDPAYGTYYIDHVNKQTQYENPVLQ 374 (1145)
Q Consensus 298 ~gWe~~~~~~Gr~yyidh~t~tT~W~~Pr~-~~~~~~~~~~~~~~L-P~gWe~~~~~~g~~yyinh~~k~t~~~~P~~~ 374 (1145)
..|++..+++||+||+|..|+.++|+.|.- -+. .+..| -.+|.+..+.+|++||+|..|+.+.|.-|...
T Consensus 15 s~w~e~k~~dgRiYYYN~~T~kS~weKPkell~~-------~e~~l~~~~Wke~~TadGkvyyyN~~TREs~W~iP~e~ 86 (590)
T COG5104 15 SEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKG-------SEEDLDVDPWKECRTADGKVYYYNSITRESRWKIPPER 86 (590)
T ss_pred HHHHHhhCCCCceEEEecccccccccChHHHhcc-------hHhhhchhhHHHHhhcCCceEEecCccccccccCChhh
Confidence 349999999999999999999999999942 111 11112 25799999999999999999999999988543
No 86
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.91 E-value=3.6e-05 Score=90.67 Aligned_cols=76 Identities=26% Similarity=0.464 Sum_probs=64.0
Q ss_pred ccceeEEEecCCCC--CCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEEEeC
Q psy6910 445 LRGLGFTIVGGDDS--KEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522 (1145)
Q Consensus 445 ~~glG~~i~gg~~~--~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 522 (1145)
..|+|+.+.-.... ...++.|..|.++|||++.| |++||+|++|||+++.+++..++..+|+. +.|..|.|+|.|+
T Consensus 84 ~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g-~~g~~v~ltv~r~ 161 (389)
T PLN00049 84 VTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQG-PEGSSVELTLRRG 161 (389)
T ss_pred ceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCCEEEEEEEEC
Confidence 45899988643221 12369999999999999999 99999999999999999999999999986 4688999999885
No 87
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.89 E-value=2.3e-06 Score=96.81 Aligned_cols=122 Identities=12% Similarity=0.081 Sum_probs=92.7
Q ss_pred CcEEEEEecCCccCcccchhccccCCCCchHHHHhhhhcc--------CcceeecccccCCCCCCCcCCccEEEeCHHHH
Q psy6910 100 KTLTLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRD--------NLYLRTVPVTTRTPRDGELNGVDYTFLSIEEF 171 (1145)
Q Consensus 100 ~~v~~~~~p~~~~~~~~~~~~~l~f~k~~i~~~l~~~~~~--------~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f 171 (1145)
..+.+.++|++++ |+++...|.+.+.- .+| +.+++||++|+++|++|++|||++..+|
T Consensus 4 ~~~i~i~GptgsG-------------Kt~la~~la~~~~~~iis~Ds~Qvy-~~l~i~Takp~~~E~~gv~hhlid~~~~ 69 (307)
T PRK00091 4 PKVIVIVGPTASG-------------KTALAIELAKRLNGEIISADSMQVY-RGMDIGTAKPTAEERAGVPHHLIDILDP 69 (307)
T ss_pred ceEEEEECCCCcC-------------HHHHHHHHHHhCCCcEEecccccee-ecccccCCCCCHHHHcCccEEeecccCh
Confidence 4688888998885 66777666665321 145 5899999999999999999999999999
Q ss_pred HHHHHcCCEEEEEEeCCcccCCCccchhhhhcCCCCceeeecCCCChhhhhhhhcccccccceeEecCCChhhhhhhhhc
Q psy6910 172 KQLEKSGCLLESGLYEGNHYGTPKPVKEPYVSLPQNVNLLPGAHPSSEGKRKRNRSNVEAMASKSIEPDMKTNGFDNKTV 251 (1145)
Q Consensus 172 ~~~~~~~~flE~~~~~g~~YGt~~~~i~~~~~~g~~~~~il~~~~~~~~~~~~~~~~~~~~~~ifi~pps~~~l~~rl~~ 251 (1145)
.+....++|+|+. ++.|++++++|+ ++|+. . +.++ .+ +...... +..||+.++++++|+.
T Consensus 70 ~~~~s~~~f~~~a----------~~~i~~i~~~gk--~pIlv--G-Gt~~-Y~-~al~~g~---~~~p~~~~~~r~~l~~ 129 (307)
T PRK00091 70 TESYSVADFQRDA----------LAAIADILARGK--LPILV--G-GTGL-YI-KALLEGL---SPLPPADPELRAELEA 129 (307)
T ss_pred hhcccHHHHHHHH----------HHHHHHHHhCCC--CEEEE--C-cHHH-HH-HHhccCC---CCCCCCCHHHHHHHHH
Confidence 9999999999986 788999999988 77775 2 1222 12 2333333 4678888999999998
Q ss_pred cCCC
Q psy6910 252 NMGN 255 (1145)
Q Consensus 252 rg~~ 255 (1145)
+..+
T Consensus 130 ~~~~ 133 (307)
T PRK00091 130 LAAE 133 (307)
T ss_pred HHHh
Confidence 7654
No 88
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.88 E-value=5.1e-05 Score=68.14 Aligned_cols=57 Identities=33% Similarity=0.414 Sum_probs=50.3
Q ss_pred cEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEEEeC
Q psy6910 462 FLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522 (1145)
Q Consensus 462 ~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 522 (1145)
++.|.+|.+++||+. | |++||+|++|||..+. +.+++..+|+....|..+.|++.|+
T Consensus 9 Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~ 65 (79)
T cd00986 9 GVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKRE 65 (79)
T ss_pred CEEEEEECCCCchhh-C-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEEC
Confidence 589999999999985 7 9999999999999998 4678888888766788999999886
No 89
>KOG3938|consensus
Probab=97.80 E-value=2.2e-05 Score=82.62 Aligned_cols=82 Identities=24% Similarity=0.356 Sum_probs=70.7
Q ss_pred ccEEEEEEecCCCCcceEEeccCCc-ceEEEeec---ccccCCCCCCCEEEEECCEecCCCCHHHHHHHHhcCCCCceEE
Q psy6910 596 SEYLTIPIVKGAMGFGFTIADSSHG-QKVKKILD---RQRCKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEAN 671 (1145)
Q Consensus 596 ~~~~~v~l~k~~~glG~~i~~~~~g-~~V~~i~~---a~~~g~L~~GD~Il~INg~~v~~~s~~ea~~~Lk~~~~g~~v~ 671 (1145)
++.-+|+++|....||++|.|.-.| -+||+|.+ .++-..+++||.|-+|||.++.++.|-||..+||+.++|.+.+
T Consensus 125 Gq~kEv~v~KsedalGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ft 204 (334)
T KOG3938|consen 125 GQAKEVEVVKSEDALGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFT 204 (334)
T ss_pred CcceeEEEEecccccceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeE
Confidence 4556789999999999999987665 57898887 4555589999999999999999999999999999999998888
Q ss_pred EEEEcC
Q psy6910 672 IIVQRS 677 (1145)
Q Consensus 672 L~v~R~ 677 (1145)
|.+.-+
T Consensus 205 lrLieP 210 (334)
T KOG3938|consen 205 LRLIEP 210 (334)
T ss_pred EEeecc
Confidence 877554
No 90
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.79 E-value=6.1e-05 Score=87.21 Aligned_cols=72 Identities=31% Similarity=0.503 Sum_probs=62.8
Q ss_pred ccceeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEEEeC
Q psy6910 445 LRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522 (1145)
Q Consensus 445 ~~glG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 522 (1145)
..|||+.+.-.. ..+.|..|.++|||+++| |++||+|++|||..+.+++..++..+|+.. .|..|.|+|.|+
T Consensus 50 ~~~lG~~~~~~~----~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~-~g~~v~l~v~R~ 121 (334)
T TIGR00225 50 LEGIGIQVGMDD----GEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGK-KGTKVSLEILRA 121 (334)
T ss_pred eEEEEEEEEEEC----CEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCC-CCCEEEEEEEeC
Confidence 457999886532 359999999999999999 999999999999999999888898988774 588999999886
No 91
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.76 E-value=9.7e-05 Score=67.89 Aligned_cols=59 Identities=39% Similarity=0.586 Sum_probs=51.3
Q ss_pred ccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEEEeC
Q psy6910 461 EFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522 (1145)
Q Consensus 461 ~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 522 (1145)
.+++|..|.+++||++.| |++||+|++|||..+.+ ..++..+++....+..+.|.+.|+
T Consensus 24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~--~~~~~~~l~~~~~~~~i~l~v~r~ 82 (90)
T cd00987 24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKS--VADLRRALAELKPGDKVTLTVLRG 82 (90)
T ss_pred CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEEC
Confidence 469999999999999988 99999999999999985 456777887765688999999886
No 92
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.75 E-value=7.7e-05 Score=87.83 Aligned_cols=73 Identities=30% Similarity=0.467 Sum_probs=63.6
Q ss_pred CcceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeCC
Q psy6910 1042 TRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGD-STVRLLIKRGG 1118 (1145)
Q Consensus 1042 ~~~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~-~~v~L~v~R~~ 1118 (1145)
-.++|..+..... ..+.|.++.+++||+++| |++||+|++|||.++.+++..+++..|+... ..|+|++.|.+
T Consensus 99 ~~GiG~~i~~~~~---~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~ 172 (406)
T COG0793 99 FGGIGIELQMEDI---GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAG 172 (406)
T ss_pred ccceeEEEEEecC---CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcC
Confidence 3578888876431 578999999999999999 9999999999999999999999999999865 46999999963
No 93
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.73 E-value=0.00011 Score=86.53 Aligned_cols=76 Identities=30% Similarity=0.483 Sum_probs=61.6
Q ss_pred cceeEEEEccCCc--ccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Q psy6910 1043 RGFGFSIRGGREF--QNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRN-GDSTVRLLIKRGGS 1119 (1145)
Q Consensus 1043 ~~lG~sl~gg~~~--~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~-~~~~v~L~v~R~~~ 1119 (1145)
.++|+.+...... ...+++|..|.++|||+++| |++||+|++|||+++.++++.++..+|+. .+..+.|+|.|++.
T Consensus 85 ~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~ 163 (389)
T PLN00049 85 TGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGPE 163 (389)
T ss_pred eEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 3678877542211 01378999999999999999 99999999999999999999999999986 44579999988764
No 94
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.72 E-value=0.00011 Score=85.25 Aligned_cols=72 Identities=31% Similarity=0.536 Sum_probs=60.8
Q ss_pred cceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Q psy6910 1043 RGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRN-GDSTVRLLIKRGGS 1119 (1145)
Q Consensus 1043 ~~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~-~~~~v~L~v~R~~~ 1119 (1145)
.++|+.+... ..+++|..|.++|||+++| |++||+|++|||.++.+++..++..+++. .+..+.|++.|++.
T Consensus 51 ~~lG~~~~~~----~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~ 123 (334)
T TIGR00225 51 EGIGIQVGMD----DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGK 123 (334)
T ss_pred EEEEEEEEEE----CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCC
Confidence 3678877542 3468999999999999999 99999999999999998887888888876 45679999999764
No 95
>KOG3542|consensus
Probab=97.71 E-value=4.6e-05 Score=88.76 Aligned_cols=85 Identities=24% Similarity=0.318 Sum_probs=75.8
Q ss_pred ccceEEEEEEecc--cceeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCC
Q psy6910 433 IGERIHSSLVKSL--RGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSIS 510 (1145)
Q Consensus 433 ~g~~~~v~l~k~~--~glG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~ 510 (1145)
+.+...|.|.|.. ..|=|.+.||.+. +-+|||..|.||+.|++.| |+.||+|++|||.+..+++...|+++|++
T Consensus 533 KAK~RqviLtk~sre~pl~f~L~GGsEk-GfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrn-- 608 (1283)
T KOG3542|consen 533 KAKPRQVILTKASREDPLMFRLVGGSEK-GFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRN-- 608 (1283)
T ss_pred cccceeEEEecccccCCceeEeccCccc-cceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcC--
Confidence 5667788899843 4799999999887 7789999999999999999 99999999999999999999999999998
Q ss_pred CCCeEEEEEEeC
Q psy6910 511 PGETVQLEVCRG 522 (1145)
Q Consensus 511 ~g~~v~l~v~R~ 522 (1145)
...+.|+|.-+
T Consensus 609 -nthLtltvKtN 619 (1283)
T KOG3542|consen 609 -NTHLTLTVKTN 619 (1283)
T ss_pred -CceEEEEEecc
Confidence 35788888654
No 96
>KOG3542|consensus
Probab=97.70 E-value=5.1e-05 Score=88.40 Aligned_cols=84 Identities=32% Similarity=0.542 Sum_probs=72.3
Q ss_pred CcccEEEEeecCC--cceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC
Q psy6910 1030 DEQYHAIELSRGT--RGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGD 1107 (1145)
Q Consensus 1030 ~~~~~~v~l~k~~--~~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~ 1107 (1145)
..+.+.|.|.|.. ..+-|.|.||.+. .-++||..|.||+.|+++| |+.||+|++|||++....+...|+++|++.
T Consensus 533 KAK~RqviLtk~sre~pl~f~L~GGsEk-GfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnn- 609 (1283)
T KOG3542|consen 533 KAKPRQVILTKASREDPLMFRLVGGSEK-GFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNN- 609 (1283)
T ss_pred cccceeEEEecccccCCceeEeccCccc-cceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCC-
Confidence 3456788888743 4799999999876 6689999999999999999 999999999999999999999999999975
Q ss_pred CeEEEEEEe
Q psy6910 1108 STVRLLIKR 1116 (1145)
Q Consensus 1108 ~~v~L~v~R 1116 (1145)
-.++|+|+-
T Consensus 610 thLtltvKt 618 (1283)
T KOG3542|consen 610 THLTLTVKT 618 (1283)
T ss_pred ceEEEEEec
Confidence 446777653
No 97
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.56 E-value=0.00026 Score=78.27 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=53.6
Q ss_pred cccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCc
Q psy6910 1057 NMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNG--DSTVRLLIKRGGSV 1120 (1145)
Q Consensus 1057 ~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~--~~~v~L~v~R~~~~ 1120 (1145)
..|+.|..+.++++|+++| |++||+|++|||.++. +++++.+++... +..+.|+|.|++..
T Consensus 190 ~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~--~~~~~~~~l~~~~~~~~v~l~V~R~G~~ 252 (259)
T TIGR01713 190 LEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLR--DPEQAFQALQMLREETNLTLTVERDGQR 252 (259)
T ss_pred eeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCeEEEEEEECCEE
Confidence 3578999999999999999 9999999999999998 778888888873 35799999998864
No 98
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.49 E-value=0.00035 Score=77.26 Aligned_cols=61 Identities=20% Similarity=0.143 Sum_probs=54.3
Q ss_pred CccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEEEeCC
Q psy6910 460 EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGY 523 (1145)
Q Consensus 460 ~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 523 (1145)
..++.|..+.++++|++.| |++||+|++|||.++. +..++.+++.....+..++|+|.|+.
T Consensus 190 ~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~--~~~~~~~~l~~~~~~~~v~l~V~R~G 250 (259)
T TIGR01713 190 LEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLR--DPEQAFQALQMLREETNLTLTVERDG 250 (259)
T ss_pred eeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCeEEEEEEECC
Confidence 3579999999999999999 9999999999999998 45678888888777889999999973
No 99
>KOG3259|consensus
Probab=97.46 E-value=4.7e-05 Score=73.17 Aligned_cols=34 Identities=32% Similarity=0.781 Sum_probs=30.8
Q ss_pred CCCCCCcEEEEcc-CCceEeeeCCCCceeccCCcc
Q psy6910 294 GPLPPRWEKAYTE-KGEVYFIDHNSSTSSWLDPRL 327 (1145)
Q Consensus 294 ~pLP~gWe~~~~~-~Gr~yyidh~t~tT~W~~Pr~ 327 (1145)
.-||++||++++. +||+||+||.|+.++|+.|..
T Consensus 5 ~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~ 39 (163)
T KOG3259|consen 5 EKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSG 39 (163)
T ss_pred ccCCchhheeccccCCCcceeccccchhhccCCCc
Confidence 4599999999994 699999999999999999964
No 100
>KOG0609|consensus
Probab=97.43 E-value=0.00033 Score=81.64 Aligned_cols=84 Identities=29% Similarity=0.445 Sum_probs=73.2
Q ss_pred ccEEEEeecC-CcceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeE
Q psy6910 1032 QYHAIELSRG-TRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTV 1110 (1145)
Q Consensus 1032 ~~~~v~l~k~-~~~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~~~v 1110 (1145)
..+.|.+.|. ...+|.+++.... ..++|.+|..||.|.+.|.|++||+|++|||.++.+.+..++.++|+...+.+
T Consensus 122 ~vriv~i~k~~~eplG~Tik~~e~---~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~i 198 (542)
T KOG0609|consen 122 AVRIVRIVKNTGEPLGATIRVEED---TKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSI 198 (542)
T ss_pred eeEEEEEeecCCCccceEEEeccC---CccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcE
Confidence 3567777776 6689999987432 26999999999999999999999999999999999999999999999998999
Q ss_pred EEEEEeCC
Q psy6910 1111 RLLIKRGG 1118 (1145)
Q Consensus 1111 ~L~v~R~~ 1118 (1145)
++++...-
T Consensus 199 tfkiiP~~ 206 (542)
T KOG0609|consen 199 TFKIIPSY 206 (542)
T ss_pred EEEEcccc
Confidence 99987553
No 101
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.42 E-value=0.00034 Score=86.61 Aligned_cols=71 Identities=25% Similarity=0.403 Sum_probs=57.9
Q ss_pred cceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECC-----EEcCCCCHHHHHHHHHcCC-CeEEEEEEe
Q psy6910 1043 RGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEING-----INTKNMTHAEAIEIIRNGD-STVRLLIKR 1116 (1145)
Q Consensus 1043 ~~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING-----~~v~~~s~~eav~~lk~~~-~~v~L~v~R 1116 (1145)
.++|+.+... ...++|.+|.+||||++++.|++||+|++||+ .++.+++.++++.+|+... .+|.|+|.|
T Consensus 244 ~GIGa~l~~~----~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r 319 (667)
T PRK11186 244 EGIGAVLQMD----DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILP 319 (667)
T ss_pred eEEEEEEEEe----CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEe
Confidence 4678777543 23589999999999999833999999999994 4677889999999999754 569999988
Q ss_pred C
Q psy6910 1117 G 1117 (1145)
Q Consensus 1117 ~ 1117 (1145)
.
T Consensus 320 ~ 320 (667)
T PRK11186 320 A 320 (667)
T ss_pred C
Confidence 4
No 102
>KOG0940|consensus
Probab=97.36 E-value=0.00018 Score=82.40 Aligned_cols=81 Identities=22% Similarity=0.315 Sum_probs=64.9
Q ss_pred cCCCCCCCCcEEEEccCC---ceEeeeCCCC-ceeccCCcchhcccccccC-----CCCCCC-CCceeeeCCCCceEEEe
Q psy6910 291 LDLGPLPPRWEKAYTEKG---EVYFIDHNSS-TSSWLDPRLCKFQKKLEDC-----SDDELP-YGWERIDDPAYGTYYID 360 (1145)
Q Consensus 291 ~~~~pLP~gWe~~~~~~G---r~yyidh~t~-tT~W~~Pr~~~~~~~~~~~-----~~~~LP-~gWe~~~~~~g~~yyin 360 (1145)
.+.++||.+|+...+..| ..||++|++. .|.|.+|.... .+.+. ..+.|+ ++|+..++..|.+||++
T Consensus 56 ldy~glprewf~~lS~e~~~p~~~~~~~~~~~~tlq~~P~sg~---~p~~l~~~~~vg~~~~l~~~h~~~~~~g~r~F~~ 132 (358)
T KOG0940|consen 56 LDYGGLPREWFFLLSHEGFNPWYGLFQHSRKDYTLWLNPRSGV---NPGHLTYFRFVGGVLALAGWHMRFTDTGQRPFYK 132 (358)
T ss_pred cccCCCCcceeeeeccccCCcceeeeeecccccccccCCccCC---CCCcccccccccccccccceeeEecCCCceehhh
Confidence 356889999999999998 9999999999 59999997651 11111 122222 38999999999999999
Q ss_pred CCCceeeCcCCccc
Q psy6910 361 HVNKQTQYENPVLQ 374 (1145)
Q Consensus 361 h~~k~t~~~~P~~~ 374 (1145)
|.+++|+|-+|+..
T Consensus 133 ~i~~ktt~ldd~e~ 146 (358)
T KOG0940|consen 133 HILKKTTTLDDREA 146 (358)
T ss_pred hhhcCccccCchhh
Confidence 99999999999765
No 103
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.23 E-value=0.0027 Score=74.11 Aligned_cols=132 Identities=16% Similarity=0.168 Sum_probs=89.8
Q ss_pred EEEeCCCChhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhccCCCeEEEEEe-eccCCCCcccccCCCCCeEEEEe
Q psy6910 848 IGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIR-RKVMPPAETTSMMLGYPYDVTIT 926 (1145)
Q Consensus 848 V~~V~pgs~A~~~G~L~~GD~IlsVNG~~v~~~s~~~~~~~L~~~~~~~~v~L~v~-r~~~~~~~~~~~~~~~~~~V~l~ 926 (1145)
|..|.|+|+|+.+| |++||+|++|||..+. ++.++...+. ...+.+.|. |.+ ....+.+.
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~--Dw~D~~~~l~----~e~l~L~V~~rdG------------e~~~l~Ie 62 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPR--DLIDYQFLCA----DEELELEVLDANG------------ESHQIEIE 62 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHhc----CCcEEEEEEcCCC------------eEEEEEEe
Confidence 67889999999999 9999999999999998 6677665553 246788776 433 22567777
Q ss_pred ccCCCcccEEEeecCCC------CC---ceEEEeCCCCcccccCCCCCCCEEEEE---CCeeecccCHHHHHHHHHcCCC
Q psy6910 927 RRENEGFGFVIISSLNK------AG---STIGRIIEDSPADRSGELHLGDHILAV---NHVDIMSLHHGEIVNLIKDSGY 994 (1145)
Q Consensus 927 r~~~~~lG~~l~~~~~~------~g---~~I~~v~~gs~A~~~G~L~~GD~Il~V---NG~~v~~~~~~~~~~~l~~~~~ 994 (1145)
+...+.||+.+....-. .. +||...-+|- =...- ++--|-=++. |-..+++++..+...+++.-=.
T Consensus 63 ~~~dedlG~~f~~~~~d~~~~C~N~C~FCFidQlP~gm-R~sLY-~KDDDyRLSFL~GnyiTLTNl~~~d~~RI~~~~ls 140 (433)
T TIGR03279 63 KDLDEDLGLEFTTALFDGLIQCNNRCPFCFIDQQPPGK-RESLY-LKDDDYRLSFLYGSYLTLTNLPPAEWQRIEQLRLS 140 (433)
T ss_pred cCCCCCCcEEeccccCCcccccCCcCceEeccCCCCCC-cCcce-eccCcchhhhhccceeeecCCCHHHHHHHHHcCCC
Confidence 77789999987543311 12 3344433321 11111 3444443333 6677889999999999988666
Q ss_pred EEEEEE
Q psy6910 995 CVTLTI 1000 (1145)
Q Consensus 995 ~v~L~v 1000 (1145)
++.+.|
T Consensus 141 pl~iSV 146 (433)
T TIGR03279 141 PLYVSV 146 (433)
T ss_pred CEEEEE
Confidence 777777
No 104
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.18 E-value=0.00079 Score=78.39 Aligned_cols=60 Identities=27% Similarity=0.397 Sum_probs=53.2
Q ss_pred ccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCc
Q psy6910 1058 MALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRN--GDSTVRLLIKRGGSV 1120 (1145)
Q Consensus 1058 ~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~--~~~~v~L~v~R~~~~ 1120 (1145)
.+++|..|.++++|+++| |++||+|++|||+.+. +++++.+.++. .++++.|++.|++..
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~g~~ 339 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVI--GAEELMDRIAETRPGSKVMVTVLRQGKQ 339 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 479999999999999999 9999999999999998 77888888875 457799999998754
No 105
>KOG3834|consensus
Probab=97.16 E-value=0.0051 Score=69.92 Aligned_cols=142 Identities=19% Similarity=0.180 Sum_probs=96.0
Q ss_pred CceEEEEeCCCChhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhccCCCeEEEEEeeccCCCCcccccCCCCCeEE
Q psy6910 844 SQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSMMLGYPYDV 923 (1145)
Q Consensus 844 ~~i~V~~V~pgs~A~~~G~L~~GD~IlsVNG~~v~~~s~~~~~~~L~~~~~~~~v~L~v~r~~~~~~~~~~~~~~~~~~V 923 (1145)
.+.-|.+|..+++|.++|..---|.|++|||.-+.. ..+.+..+|+...+ .|+|+|...... ..+.+
T Consensus 15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~se--kVkltv~n~kt~----------~~R~v 81 (462)
T KOG3834|consen 15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKANSE--KVKLTVYNSKTQ----------EVRIV 81 (462)
T ss_pred eeEEEEEeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhccc--ceEEEEEecccc----------eeEEE
Confidence 356677899999999999445588999999998884 23344455555543 388888764332 34566
Q ss_pred EEeccCCCc---ccEEEeecCCC----CCceEEEeCCCCcccccCCCC-CCCEEEEE-CCeeecccCHHHHHHHHHc-CC
Q psy6910 924 TITRRENEG---FGFVIISSLNK----AGSTIGRIIEDSPADRSGELH-LGDHILAV-NHVDIMSLHHGEIVNLIKD-SG 993 (1145)
Q Consensus 924 ~l~r~~~~~---lG~~l~~~~~~----~g~~I~~v~~gs~A~~~G~L~-~GD~Il~V-NG~~v~~~~~~~~~~~l~~-~~ 993 (1145)
.+.+....+ ||++|.-.... .---|-+|.++|||+++| |+ .+|-|+-+ |.+.- ..++...+|.. -+
T Consensus 82 ~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAg-l~~~~DYivG~~~~~~~---~~eDl~~lIeshe~ 157 (462)
T KOG3834|consen 82 EIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAG-LRPYTDYIVGIWDAVMH---EEEDLFTLIESHEG 157 (462)
T ss_pred EecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcc-cccccceEecchhhhcc---chHHHHHHHHhccC
Confidence 666655444 88877533221 112377899999999999 66 89999988 55432 34555555554 56
Q ss_pred CEEEEEEeC
Q psy6910 994 YCVTLTIGA 1002 (1145)
Q Consensus 994 ~~v~L~v~r 1002 (1145)
+.+.|.|..
T Consensus 158 kpLklyVYN 166 (462)
T KOG3834|consen 158 KPLKLYVYN 166 (462)
T ss_pred CCcceeEee
Confidence 788888854
No 106
>PRK10898 serine endoprotease; Provisional
Probab=97.14 E-value=0.00097 Score=77.61 Aligned_cols=60 Identities=22% Similarity=0.422 Sum_probs=52.3
Q ss_pred ccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCCCc
Q psy6910 1058 MALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRN--GDSTVRLLIKRGGSV 1120 (1145)
Q Consensus 1058 ~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~--~~~~v~L~v~R~~~~ 1120 (1145)
.+++|..|.++++|+++| |++||+|++|||+++. ++.++.+.|.. .+..+.|++.|+++.
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~--s~~~l~~~l~~~~~g~~v~l~v~R~g~~ 340 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDKQ 340 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 579999999999999999 9999999999999998 67777777765 456799999998754
No 107
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.06 E-value=0.0012 Score=76.94 Aligned_cols=59 Identities=31% Similarity=0.470 Sum_probs=52.9
Q ss_pred ccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEEEeC
Q psy6910 461 EFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522 (1145)
Q Consensus 461 ~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 522 (1145)
.+++|.+|.+++||++.| |++||+|++|||..+. +..++.++|+....|+.|.|+|.|+
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~ 336 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVI--GAEELMDRIAETRPGSKVMVTVLRQ 336 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 469999999999999999 9999999999999997 4667888888766799999999986
No 108
>PRK10898 serine endoprotease; Provisional
Probab=97.02 E-value=0.0015 Score=75.94 Aligned_cols=59 Identities=29% Similarity=0.539 Sum_probs=52.1
Q ss_pred ccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEEEeC
Q psy6910 461 EFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522 (1145)
Q Consensus 461 ~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 522 (1145)
.+++|..|.+++||++.| |++||+|++|||..+.. ..+..++|...+.|+.+.|++.|+
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~~l~~~l~~~~~g~~v~l~v~R~ 337 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAIS--ALETMDQVAEIRPGSVIPVVVMRD 337 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEEC
Confidence 579999999999999999 99999999999999974 456777777766799999999986
No 109
>KOG3834|consensus
Probab=96.96 E-value=0.0045 Score=70.34 Aligned_cols=142 Identities=25% Similarity=0.384 Sum_probs=100.3
Q ss_pred CceEEEeCCCCcccccCCCCCCCEEEEECCeeecccCHHHHHHHHHcCCCEEEEEEeCCCCCCCCCCCcccCccCCCCCC
Q psy6910 945 GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSAASHREYE 1024 (1145)
Q Consensus 945 g~~I~~v~~gs~A~~~G~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~L~v~r~~~~~~~~~~~s~~~~~~~~~p 1024 (1145)
+..|-.|..+|+|.++|-.---|.|++|||..+.. ....+..++++..+.|+|+|...
T Consensus 16 g~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~sekVkltv~n~--------------------- 73 (462)
T KOG3834|consen 16 GYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKANSEKVKLTVYNS--------------------- 73 (462)
T ss_pred eEEEEEeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhcccceEEEEEec---------------------
Confidence 45577899999999999667789999999998864 45566667777666699998542
Q ss_pred CCCCCCcccEEEEeecCCc-c---eeEEEEccCCc--ccccEEEEEEcCCChhcccCCCC-CCCEEEEE-CCEEcCCCCH
Q psy6910 1025 EGGEHDEQYHAIELSRGTR-G---FGFSIRGGREF--QNMALFVLQIAENGPAALDGHLK-VGDEIVEI-NGINTKNMTH 1096 (1145)
Q Consensus 1025 ~~~~~~~~~~~v~l~k~~~-~---lG~sl~gg~~~--~~~~v~V~~V~~gg~A~~~G~L~-~GD~Il~I-NG~~v~~~s~ 1096 (1145)
.....+.+.+..... + ||++|+--... ...---|.+|.++++|+++| |+ -+|.|+-| |..- ...
T Consensus 74 ----kt~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAg-l~~~~DYivG~~~~~~---~~~ 145 (462)
T KOG3834|consen 74 ----KTQEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAG-LRPYTDYIVGIWDAVM---HEE 145 (462)
T ss_pred ----ccceeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcc-cccccceEecchhhhc---cch
Confidence 123445566654322 3 78888754321 01223488999999999999 66 88999988 5533 267
Q ss_pred HHHHHHHHcCCC-eEEEEEEe
Q psy6910 1097 AEAIEIIRNGDS-TVRLLIKR 1116 (1145)
Q Consensus 1097 ~eav~~lk~~~~-~v~L~v~R 1116 (1145)
++...+|..+.+ .+.|.|..
T Consensus 146 eDl~~lIeshe~kpLklyVYN 166 (462)
T KOG3834|consen 146 EDLFTLIESHEGKPLKLYVYN 166 (462)
T ss_pred HHHHHHHHhccCCCcceeEee
Confidence 888888887654 47777653
No 110
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=96.85 E-value=0.0039 Score=72.33 Aligned_cols=71 Identities=25% Similarity=0.562 Sum_probs=55.3
Q ss_pred CCcceeEEEEccCCcccccEEEEEEc--------CCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEE
Q psy6910 1041 GTRGFGFSIRGGREFQNMALFVLQIA--------ENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGD-STVR 1111 (1145)
Q Consensus 1041 ~~~~lG~sl~gg~~~~~~~v~V~~V~--------~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~-~~v~ 1111 (1145)
++..+|+.+. ..+++|.... .++||+++| |++||+|++|||.++. +++++.++++... ..+.
T Consensus 94 gG~~iGI~l~------t~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~--s~~DL~~iL~~~~g~~V~ 164 (402)
T TIGR02860 94 GGQSIGVKLN------TKGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIK--NMDDLANLINKAGGEKLT 164 (402)
T ss_pred CCEEEEEEEe------cCEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCeEE
Confidence 4456676664 2456665432 258999999 9999999999999998 8899999998754 5699
Q ss_pred EEEEeCCCc
Q psy6910 1112 LLIKRGGSV 1120 (1145)
Q Consensus 1112 L~v~R~~~~ 1120 (1145)
|++.|++..
T Consensus 165 LtV~R~Ge~ 173 (402)
T TIGR02860 165 LTIERGGKI 173 (402)
T ss_pred EEEEECCEE
Confidence 999998764
No 111
>KOG0606|consensus
Probab=96.56 E-value=0.0044 Score=77.94 Aligned_cols=80 Identities=26% Similarity=0.442 Sum_probs=66.6
Q ss_pred EEEeecCCcceeEEEEccC------CcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC
Q psy6910 1035 AIELSRGTRGFGFSIRGGR------EFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDS 1108 (1145)
Q Consensus 1035 ~v~l~k~~~~lG~sl~gg~------~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~~ 1108 (1145)
.+.+.+++.+|||++..-. +....-..|..|.+++||..+| |++||.|+.|||+.|.++.|.|++++|-+.++
T Consensus 629 pI~i~~~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~gn 707 (1205)
T KOG0606|consen 629 PITIHFSGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSGN 707 (1205)
T ss_pred ceeeeccccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcCC
Confidence 4778888889999875332 2112235688999999999999 99999999999999999999999999999999
Q ss_pred eEEEEEE
Q psy6910 1109 TVRLLIK 1115 (1145)
Q Consensus 1109 ~v~L~v~ 1115 (1145)
++.|.+.
T Consensus 708 ~v~~~tt 714 (1205)
T KOG0606|consen 708 KVTLRTT 714 (1205)
T ss_pred eeEEEee
Confidence 8877654
No 112
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=96.56 E-value=0.0034 Score=73.30 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=44.5
Q ss_pred EEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEE-eCCC
Q psy6910 1062 VLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIK-RGGS 1119 (1145)
Q Consensus 1062 V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~~~v~L~v~-R~~~ 1119 (1145)
|..|.|+|+|+++| |++||+|++|||+.+. +|.++...+. +..+.|+|. |++.
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~--Dw~D~~~~l~--~e~l~L~V~~rdGe 55 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPR--DLIDYQFLCA--DEELELEVLDANGE 55 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHhc--CCcEEEEEEcCCCe
Confidence 67889999999999 9999999999999998 7888777774 356888886 5553
No 113
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.55 E-value=0.0071 Score=55.14 Aligned_cols=70 Identities=19% Similarity=0.140 Sum_probs=42.2
Q ss_pred CCCceeeeccccCCCceEEEEecCCcccc--------ccC-CCCCCcEEEeeCCEEecCCCHHHHHHHHHhhcCCCC-cE
Q psy6910 33 GSLNFSVGGGSDSGEFAYVTNINKEKVKG--------AEK-YLEEKAIILEIQGQKVAGYTRRDTIAWLNHCCRSGK-TL 102 (1145)
Q Consensus 33 g~~~~~i~gg~e~g~~~~v~~i~~~~~~~--------~sg-~l~~GD~i~evng~~v~g~~~~~~~~~l~~~~~~~~-~v 102 (1145)
|.||..+. .+. ....|++|..|..-+ +-| .+++||.|++|||++|. ...++..+|.+. .| .|
T Consensus 1 G~LGAd~~--~~~-~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~--~~~~~~~lL~~~---agk~V 72 (88)
T PF14685_consen 1 GLLGADFS--YDN-GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVT--ADANPYRLLEGK---AGKQV 72 (88)
T ss_dssp -B-SEEEE--EET-TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-B--TTB-HHHHHHTT---TTSEE
T ss_pred CccceEEE--EcC-CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECC--CCCCHHHHhccc---CCCEE
Confidence 34565555 343 445799999984433 334 78999999999999997 556788888887 66 77
Q ss_pred EEEEecCC
Q psy6910 103 TLRTVSSA 110 (1145)
Q Consensus 103 ~~~~~p~~ 110 (1145)
.|++-...
T Consensus 73 ~Ltv~~~~ 80 (88)
T PF14685_consen 73 LLTVNRKP 80 (88)
T ss_dssp EEEEE-ST
T ss_pred EEEEecCC
Confidence 77776644
No 114
>KOG3259|consensus
Probab=96.54 E-value=0.0012 Score=63.83 Aligned_cols=36 Identities=28% Similarity=0.617 Sum_probs=31.8
Q ss_pred CCCCCCCceeeeCC-CCceEEEeCCCceeeCcCCccc
Q psy6910 339 DDELPYGWERIDDP-AYGTYYIDHVNKQTQYENPVLQ 374 (1145)
Q Consensus 339 ~~~LP~gWe~~~~~-~g~~yyinh~~k~t~~~~P~~~ 374 (1145)
...||+||+.+.+. .|++||.||.|+..||+.|.-.
T Consensus 4 ~~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t 40 (163)
T KOG3259|consen 4 EEKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGT 40 (163)
T ss_pred cccCCchhheeccccCCCcceeccccchhhccCCCcc
Confidence 34799999999986 8999999999999999999543
No 115
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=96.46 E-value=0.037 Score=64.35 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=56.4
Q ss_pred EeecCCcccEEEccCCccCCceEEEEe--------CCCChhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhccCCC
Q psy6910 825 LLRQENGFGFRIVGGTEEGSQVSIGHI--------VPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYG 896 (1145)
Q Consensus 825 L~k~~~glGf~l~gg~~~~~~i~V~~V--------~pgs~A~~~G~L~~GD~IlsVNG~~v~~~s~~~~~~~L~~~~~~~ 896 (1145)
+...+..+|+.+. ..+++|... ..++||+.+| |++||.|++|||.++. +++++..++.... +.
T Consensus 91 v~pgG~~iGI~l~-----t~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~--s~~DL~~iL~~~~-g~ 161 (402)
T TIGR02860 91 VIPGGQSIGVKLN-----TKGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIK--NMDDLANLINKAG-GE 161 (402)
T ss_pred EEECCEEEEEEEe-----cCEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCC-CC
Confidence 3334677888874 234555333 1368999999 9999999999999999 7788888888764 56
Q ss_pred eEEEEEeeccCC
Q psy6910 897 RVTLGIRRKVMP 908 (1145)
Q Consensus 897 ~v~L~v~r~~~~ 908 (1145)
.+.|.+.|....
T Consensus 162 ~V~LtV~R~Ge~ 173 (402)
T TIGR02860 162 KLTLTIERGGKI 173 (402)
T ss_pred eEEEEEEECCEE
Confidence 889999887643
No 116
>KOG4407|consensus
Probab=96.41 E-value=0.0045 Score=77.74 Aligned_cols=58 Identities=19% Similarity=0.440 Sum_probs=52.5
Q ss_pred cEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeC
Q psy6910 1059 ALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRG 1117 (1145)
Q Consensus 1059 ~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~~~v~L~v~R~ 1117 (1145)
.+||+.|.++++|-.+- |+.||+++.||..++.++.+.+++.++++....+.|.|..-
T Consensus 144 T~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P~ 201 (1973)
T KOG4407|consen 144 TIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVPK 201 (1973)
T ss_pred hhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCCCCCCceeccc
Confidence 47899999999999998 99999999999999999999999999999887777777543
No 117
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=96.38 E-value=0.0063 Score=67.09 Aligned_cols=82 Identities=18% Similarity=0.365 Sum_probs=59.8
Q ss_pred cccCCCCcCccceEEEEEEecccceeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHH
Q psy6910 424 FFTLNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMV 503 (1145)
Q Consensus 424 ~~~~~p~~~~g~~~~v~l~k~~~glG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~ 503 (1145)
.++.||..+-..+-.....+++ -.|+.|.-|.+. ..+ .+.| |++||++++|||.++.+ -+++.
T Consensus 184 ~l~~dP~~l~d~i~lsPv~~~G-l~GYrl~Pgkd~-~lF------------~~~G-Lq~GDva~sING~dL~D--~~qa~ 246 (276)
T PRK09681 184 ALAKDPQKIFNYIQLTPVRKEG-IVGYAVKPGADR-SLF------------DASG-FKEGDIAIALNQQDFTD--PRAMI 246 (276)
T ss_pred HHHhCHHHHhhhEEEEEEeeCC-ceEEEECCCCcH-HHH------------HHcC-CCCCCEEEEeCCeeCCC--HHHHH
Confidence 4566777754444333444443 458888777665 111 3457 99999999999999984 56888
Q ss_pred HHHhcCCCCCeEEEEEEeC
Q psy6910 504 SVFQSISPGETVQLEVCRG 522 (1145)
Q Consensus 504 ~~l~~~~~g~~v~l~v~R~ 522 (1145)
+++++.+....++|+|.|+
T Consensus 247 ~l~~~L~~~tei~ltVeRd 265 (276)
T PRK09681 247 ALMRQLPSMDSIQLTVLRK 265 (276)
T ss_pred HHHHHhccCCeEEEEEEEC
Confidence 8888888889999999997
No 118
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.29 E-value=0.0013 Score=68.84 Aligned_cols=124 Identities=13% Similarity=-0.061 Sum_probs=76.4
Q ss_pred CCcEEEEEecCCccCcccchhccccCCCCchHHHHhhhhccCcceeecccccCCCCCCCcCCccEEE-eCHHHHHH---H
Q psy6910 99 GKTLTLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTF-LSIEEFKQ---L 174 (1145)
Q Consensus 99 ~~~v~~~~~p~~~~~~~~~~~~~l~f~k~~i~~~l~~~~~~~~~~~~v~~TTR~~r~~E~~g~~Y~f-vs~~~f~~---~ 174 (1145)
+|.|.+..+|++++ |+|+.+.|.+.+. ..|. . -++|++| .....+.. .
T Consensus 1 ~~~~i~l~G~~gsG-------------Kst~a~~l~~~~~-~~~~-~-------------~~~D~~~~~~~~~~~~~~~~ 52 (175)
T cd00227 1 TGRIIILNGGSSAG-------------KSSIARALQSVLA-EPWL-H-------------FGVDSFIEALPLKCQDAEGG 52 (175)
T ss_pred CCCEEEEECCCCCC-------------HHHHHHHHHHhhC-CCcc-c-------------cCccHHHHhcChhhcccccc
Confidence 36788888998886 8899999988752 2232 1 1445333 22222221 1
Q ss_pred HHcCC-EEEEEE-eCCcccCCCccchhhhhcCCCCceeeecCCCC-hhhhhhhhcccc--cccceeEecCCChhhhhhhh
Q psy6910 175 EKSGC-LLESGL-YEGNHYGTPKPVKEPYVSLPQNVNLLPGAHPS-SEGKRKRNRSNV--EAMASKSIEPDMKTNGFDNK 249 (1145)
Q Consensus 175 ~~~~~-flE~~~-~~g~~YGt~~~~i~~~~~~g~~~~~il~~~~~-~~~~~~~~~~~~--~~~~~ifi~pps~~~l~~rl 249 (1145)
+..+. +.|+-+ +.++.|++.+..+...+++|. .||+|.... ....+...+.+. +.. .||+.+|. +++.+|+
T Consensus 53 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~G~--~VIvD~~~~~~~~~r~~~~~~~~~~~~-~v~l~~~~-~~l~~R~ 128 (175)
T cd00227 53 IEFDGDGGVSPGPEFRLLEGAWYEAVAAMARAGA--NVIADDVFLGRAALQDCWRSFVGLDVL-WVGVRCPG-EVAEGRE 128 (175)
T ss_pred cccCccCCcccchHHHHHHHHHHHHHHHHHhCCC--cEEEeeeccCCHHHHHHHHHhcCCCEE-EEEEECCH-HHHHHHH
Confidence 11111 333332 455899999999999999977 999996553 222322211221 344 78888885 8999999
Q ss_pred hccCC
Q psy6910 250 TVNMG 254 (1145)
Q Consensus 250 ~~rg~ 254 (1145)
.+|+.
T Consensus 129 ~~R~~ 133 (175)
T cd00227 129 TARGD 133 (175)
T ss_pred HhcCC
Confidence 99974
No 119
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=96.23 E-value=0.012 Score=58.70 Aligned_cols=72 Identities=25% Similarity=0.329 Sum_probs=50.4
Q ss_pred cceeEEEEccCCc--ccccEEEEEEcCCChhcccCCCCC-CCEEEEECCEEcCCCCHHHHHHHHHcCC-CeEEEEEEeC
Q psy6910 1043 RGFGFSIRGGREF--QNMALFVLQIAENGPAALDGHLKV-GDEIVEINGINTKNMTHAEAIEIIRNGD-STVRLLIKRG 1117 (1145)
Q Consensus 1043 ~~lG~sl~gg~~~--~~~~v~V~~V~~gg~A~~~G~L~~-GD~Il~ING~~v~~~s~~eav~~lk~~~-~~v~L~v~R~ 1117 (1145)
..||++++-.... ...+..|.+|.|+|||+++| |++ .|.|+.+++..+. +.+++.++++... .++.|.|...
T Consensus 26 g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~--~~~~l~~~v~~~~~~~l~L~Vyns 101 (138)
T PF04495_consen 26 GLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLD--DEDDLFELVEANENKPLQLYVYNS 101 (138)
T ss_dssp SSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE----STCHHHHHHHHTTTS-EEEEEEET
T ss_pred CCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecC--CHHHHHHHHHHcCCCcEEEEEEEC
Confidence 4689988754322 24577899999999999999 998 6999999998888 4578888888755 4588888654
No 120
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.21 E-value=0.0022 Score=71.85 Aligned_cols=84 Identities=12% Similarity=0.093 Sum_probs=65.3
Q ss_pred EEEEEecCCccCcccchhccccCCCCchHHHHhhhhcc--------CcceeecccccCCCCCCCcCCccEEEeCHHHHHH
Q psy6910 102 LTLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRD--------NLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQ 173 (1145)
Q Consensus 102 v~~~~~p~~~~~~~~~~~~~l~f~k~~i~~~l~~~~~~--------~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~ 173 (1145)
|.+.++|++++ |+++...|.+.+.- .+|. -.+++|+.|+++|++|+.||||+
T Consensus 1 vi~i~G~t~~G-------------Ks~la~~l~~~~~~~iis~Ds~qvY~-~l~IgTakp~~~e~~~v~hhlid------ 60 (287)
T TIGR00174 1 VIFIMGPTAVG-------------KSQLAIQLAKKLNAEIISVDSMQIYK-GMDIGTAKPSLQEREGIPHHLID------ 60 (287)
T ss_pred CEEEECCCCCC-------------HHHHHHHHHHhCCCcEEEechhheee-eccccCCCCCHHHHcCccEEEEE------
Confidence 35667787775 66777777665421 3454 88999999999999999999998
Q ss_pred HHHcCCEEEEEEeC--CcccCCCccchhhhhcCCCCceeeec
Q psy6910 174 LEKSGCLLESGLYE--GNHYGTPKPVKEPYVSLPQNVNLLPG 213 (1145)
Q Consensus 174 ~~~~~~flE~~~~~--g~~YGt~~~~i~~~~~~g~~~~~il~ 213 (1145)
|+++.+.. +++|++.++.|++++++|+ ++|+-
T Consensus 61 ------~~~~~~~~~v~~f~~~a~~~i~~~~~~g~--~pi~v 94 (287)
T TIGR00174 61 ------ILDPSESYSAADFQTLALNAIADITARGK--IPLLV 94 (287)
T ss_pred ------EechhheEcHHHHHHHHHHHHHHHHhCCC--CEEEE
Confidence 55555554 8999999999999999988 66663
No 121
>KOG4407|consensus
Probab=96.16 E-value=0.0054 Score=77.01 Aligned_cols=123 Identities=20% Similarity=0.253 Sum_probs=93.3
Q ss_pred EEeecCCcccEEEccCC----------------cc---------CCceEEEEeCCCChhhhcCCCCCCCEEEEECCEecC
Q psy6910 824 TLLRQENGFGFRIVGGT----------------EE---------GSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVL 878 (1145)
Q Consensus 824 ~L~k~~~glGf~l~gg~----------------~~---------~~~i~V~~V~pgs~A~~~G~L~~GD~IlsVNG~~v~ 878 (1145)
.+.|...||||+|.--. .. ..-+++..+..++++..+| +..||.|..|||..+.
T Consensus 51 ~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG-~~s~~~v~~itG~e~~ 129 (1973)
T KOG4407|consen 51 IRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSG-SSSSVGVAGITGLEPT 129 (1973)
T ss_pred EEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccC-cccccceeeecccccC
Confidence 67777999999986210 00 1236667777888999999 9999999999999887
Q ss_pred CCCHHHHHHHHHhccCCCeEEEEEeeccCCCCcccccCCCCCeEEEEeccCCCcccEEEeecCCCCCceEEEeCCCCccc
Q psy6910 879 NSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSMMLGYPYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPAD 958 (1145)
Q Consensus 879 ~~s~~~~~~~L~~~~~~~~v~L~v~r~~~~~~~~~~~~~~~~~~V~l~r~~~~~lG~~l~~~~~~~g~~I~~v~~gs~A~ 958 (1145)
+-+ .....+++. ...+||.+|.++++|.
T Consensus 130 ~~T-S~~~~~vk~---------------------------------------------------~eT~~~~eV~~n~~~~ 157 (1973)
T KOG4407|consen 130 SPT-SLPPYQVKA---------------------------------------------------METIFIKEVQANGPAH 157 (1973)
T ss_pred CCc-cccHHHHhh---------------------------------------------------hhhhhhhhhccCChhH
Confidence 543 111111110 1256788999999999
Q ss_pred ccCCCCCCCEEEEECCeeecccCHHHHHHHHHcCCCEEEEEE
Q psy6910 959 RSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000 (1145)
Q Consensus 959 ~~G~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~~~~v~L~v 1000 (1145)
.+. ||.||+++.||..++.++....++.++++.....++.|
T Consensus 158 ~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~ 198 (1973)
T KOG4407|consen 158 YAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHV 198 (1973)
T ss_pred HHh-hhccceeEEeecCcccchhhhhhhhhhccCCCCCCcee
Confidence 999 99999999999999999999999999998766556655
No 122
>KOG0606|consensus
Probab=96.13 E-value=0.0097 Score=74.96 Aligned_cols=90 Identities=23% Similarity=0.313 Sum_probs=70.0
Q ss_pred CCCCcCccceE-EEEEEecccceeEEEec------CCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCH
Q psy6910 427 LNPDELIGERI-HSSLVKSLRGLGFTIVG------GDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTH 499 (1145)
Q Consensus 427 ~~p~~~~g~~~-~v~l~k~~~glG~~i~g------g~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~ 499 (1145)
+|.+....... .|.+.++..+|||++.- +.+---.--.|-+|.+++||...| |+.||.|..|||+++.++.|
T Consensus 617 rd~s~~~~~~~ppI~i~~~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H 695 (1205)
T KOG0606|consen 617 RDSSAAMLSLRPPITIHFSGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVH 695 (1205)
T ss_pred cccchhhcCcCCceeeeccccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhH
Confidence 44444444444 48899999999988753 333101124688999999999888 99999999999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEE
Q psy6910 500 HDMVSVFQSISPGETVQLEV 519 (1145)
Q Consensus 500 ~~~~~~l~~~~~g~~v~l~v 519 (1145)
.|++++|-+ .|..|.+.+
T Consensus 696 ~ev~~Lll~--~gn~v~~~t 713 (1205)
T KOG0606|consen 696 TEVMELLLK--SGNKVTLRT 713 (1205)
T ss_pred HHHHHHHHh--cCCeeEEEe
Confidence 999999987 677887766
No 123
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=96.01 E-value=0.047 Score=54.46 Aligned_cols=97 Identities=19% Similarity=0.119 Sum_probs=61.5
Q ss_pred CCcccEEEccCCc---cCCceEEEEeCCCChhhhcCCCCC-CCEEEEECCEecCCCCHHHHHHHHHhccCCCeEEEEEee
Q psy6910 829 ENGFGFRIVGGTE---EGSQVSIGHIVPGGAADLDGRLCT-GDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRR 904 (1145)
Q Consensus 829 ~~glGf~l~gg~~---~~~~i~V~~V~pgs~A~~~G~L~~-GD~IlsVNG~~v~~~s~~~~~~~L~~~~~~~~v~L~v~r 904 (1145)
.+-||+++.-... ...+.-|..|.|+|||+.+| |++ .|.|+.+++..+. ..++...++... .+..+.|.|..
T Consensus 25 ~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~--~~~~l~~~v~~~-~~~~l~L~Vyn 100 (138)
T PF04495_consen 25 QGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLD--DEDDLFELVEAN-ENKPLQLYVYN 100 (138)
T ss_dssp SSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE----STCHHHHHHHHT-TTS-EEEEEEE
T ss_pred CCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecC--CHHHHHHHHHHc-CCCcEEEEEEE
Confidence 4558888763222 25678899999999999999 998 6999999998888 445666667655 35788898876
Q ss_pred ccCCCCcccccCCCCCeEEEEecc----CCCcccEEEee
Q psy6910 905 KVMPPAETTSMMLGYPYDVTITRR----ENEGFGFVIIS 939 (1145)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~V~l~r~----~~~~lG~~l~~ 939 (1145)
.... ..+.|++... ..+-||+.|..
T Consensus 101 s~~~----------~vR~V~i~P~~~WgG~GlLGc~ig~ 129 (138)
T PF04495_consen 101 SKTD----------SVREVTITPSRNWGGRGLLGCHIGY 129 (138)
T ss_dssp TTTT----------CEEEEEE---TTSSSSTSSSEEEE-
T ss_pred CCCC----------eEEEEEEEcCCCCCCCeeeeEEecc
Confidence 5433 3356777443 24567888754
No 124
>KOG1421|consensus
Probab=95.75 E-value=0.1 Score=62.48 Aligned_cols=128 Identities=19% Similarity=0.234 Sum_probs=86.8
Q ss_pred CceEEEEeCCCChhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhccCCCeEEEEEeeccCCCCcccccCCCCCeEE
Q psy6910 844 SQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSMMLGYPYDV 923 (1145)
Q Consensus 844 ~~i~V~~V~pgs~A~~~G~L~~GD~IlsVNG~~v~~~s~~~~~~~L~~~~~~~~v~L~v~r~~~~~~~~~~~~~~~~~~V 923 (1145)
+.++|..|.++|+|+.. |.+||.+++||+..+. .+.++.++|-+. .+..+.|+|.|.+...+ +.+
T Consensus 303 gmLvV~~vL~~gpa~k~--Le~GDillavN~t~l~--df~~l~~iLDeg-vgk~l~LtI~Rggqele----------l~v 367 (955)
T KOG1421|consen 303 GMLVVETVLPEGPAEKK--LEPGDILLAVNSTCLN--DFEALEQILDEG-VGKNLELTIQRGGQELE----------LTV 367 (955)
T ss_pred eeEEEEEeccCCchhhc--cCCCcEEEEEcceehH--HHHHHHHHHhhc-cCceEEEEEEeCCEEEE----------EEE
Confidence 45788999999999874 9999999999988777 567777777765 46789999999876421 112
Q ss_pred EEeccCC-------CcccEEEeecC---------CCCCceEEEeCCCCcccccCCCCCCCEEEEECCeeecccCHHHHHH
Q psy6910 924 TITRREN-------EGFGFVIISSL---------NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVN 987 (1145)
Q Consensus 924 ~l~r~~~-------~~lG~~l~~~~---------~~~g~~I~~v~~gs~A~~~G~L~~GD~Il~VNG~~v~~~~~~~~~~ 987 (1145)
++....+ +-.|..+.... ...|+||.+-- |+++...+ .. |-.|.+||++++..+ ..++.
T Consensus 368 tvqdlh~itp~R~levcGav~hdlsyq~ar~y~lP~~GvyVa~~~-gsf~~~~~-~y-~~ii~~vanK~tPdL--daFid 442 (955)
T KOG1421|consen 368 TVQDLHGITPDRFLEVCGAVFHDLSYQLARLYALPVEGVYVASPG-GSFRHRGP-RY-GQIIDSVANKPTPDL--DAFID 442 (955)
T ss_pred EeccccCCCCceEEEEcceEecCCCHHHHhhcccccCcEEEccCC-CCccccCC-cc-eEEEEeecCCcCCCH--HHHHH
Confidence 2111110 01122221111 01478888766 88888877 55 999999999998554 45666
Q ss_pred HHHc
Q psy6910 988 LIKD 991 (1145)
Q Consensus 988 ~l~~ 991 (1145)
.+++
T Consensus 443 vlk~ 446 (955)
T KOG1421|consen 443 VLKE 446 (955)
T ss_pred HHHh
Confidence 6665
No 125
>KOG3129|consensus
Probab=95.72 E-value=0.022 Score=58.95 Aligned_cols=61 Identities=25% Similarity=0.434 Sum_probs=47.4
Q ss_pred EEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCC-CHHHHHHHHHcCC-CeEEEEEEeCCCcC
Q psy6910 1060 LFVLQIAENGPAALDGHLKVGDEIVEINGINTKNM-THAEAIEIIRNGD-STVRLLIKRGGSVV 1121 (1145)
Q Consensus 1060 v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~-s~~eav~~lk~~~-~~v~L~v~R~~~~~ 1121 (1145)
++|.+|.|+|||+++| |+.||.|+++....-.+. ++..+....+... ..+.++|.|.+..+
T Consensus 141 a~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v 203 (231)
T KOG3129|consen 141 AVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKV 203 (231)
T ss_pred EEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEE
Confidence 5799999999999999 999999999887665544 3555555555544 55999999988654
No 126
>KOG1320|consensus
Probab=95.60 E-value=0.13 Score=60.73 Aligned_cols=61 Identities=26% Similarity=0.331 Sum_probs=50.9
Q ss_pred cccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEEEEeCCCc
Q psy6910 1057 NMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGD--STVRLLIKRGGSV 1120 (1145)
Q Consensus 1057 ~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~--~~v~L~v~R~~~~ 1120 (1145)
.+.++|..|.+++++...+ +++||+|++|||+.|. ...++.++|+.+- ++|.+..+|+.+.
T Consensus 397 ~q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~--n~~~l~~~i~~~~~~~~v~vl~~~~~e~ 459 (473)
T KOG1320|consen 397 VQLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVK--NLKHLYELIEECSTEDKVAVLDRRSAED 459 (473)
T ss_pred eeEEEEEEeccCCCccccc-ccCCCEEEEECCEEee--chHHHHHHHHhcCcCceEEEEEecCccc
Confidence 3568999999999999988 9999999999999999 4577888888754 4677777776653
No 127
>KOG0155|consensus
Probab=95.59 E-value=0.019 Score=66.34 Aligned_cols=76 Identities=16% Similarity=0.396 Sum_probs=57.6
Q ss_pred CCCcEEEEccCCceEeeeCCCCceeccCCcchhc-----------cc--------------cc------------c----
Q psy6910 297 PPRWEKAYTEKGEVYFIDHNSSTSSWLDPRLCKF-----------QK--------------KL------------E---- 335 (1145)
Q Consensus 297 P~gWe~~~~~~Gr~yyidh~t~tT~W~~Pr~~~~-----------~~--------------~~------------~---- 335 (1145)
|++|...-.++|..||+|..|...+|.+|..... .. .. .
T Consensus 11 ps~wtef~ap~G~pyy~ns~t~~st~ekP~~l~~~~s~~~~~~~p~~sp~~~~~~~~t~~~~~~e~~~~k~~~s~~~~ee 90 (617)
T KOG0155|consen 11 PSGWTEFKAPDGIPYYWNSETLESTWEKPSFLEKNESSGVTASEPSLSPAIAEAQQKTSSNAFGENPSEKLFVSENAAEE 90 (617)
T ss_pred CCCCccCCCCCCcceecccccccchhhCchhhhhccccCccccCCccCcchhhhhhhhhhccCCcchHHHHHhCcchhhc
Confidence 3899999999999999999999999999963210 00 00 0
Q ss_pred -----c---------CCCCCCCC-CceeeeCCCCceEEEeCCCceeeCcCCc
Q psy6910 336 -----D---------CSDDELPY-GWERIDDPAYGTYYIDHVNKQTQYENPV 372 (1145)
Q Consensus 336 -----~---------~~~~~LP~-gWe~~~~~~g~~yyinh~~k~t~~~~P~ 372 (1145)
. ....++|. .|-..++.++++||+|..|+...|+.|-
T Consensus 91 ~~~~~~~~kk~p~rPi~~~~ipgtdWcVVwTgD~RvFFyNpktk~S~We~P~ 142 (617)
T KOG0155|consen 91 RKNSRAARKKLPDRPIFKKPIPGTDWCVVWTGDNRVFFYNPKTKLSVWERPL 142 (617)
T ss_pred CCCcccccccCCCCCCCCCCCCCCCeEEEEeCCCceEEeCCccccccccCch
Confidence 0 00013442 4999999999999999999999999984
No 128
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=95.59 E-value=0.048 Score=49.77 Aligned_cols=59 Identities=24% Similarity=0.372 Sum_probs=37.9
Q ss_pred cEEEEEEcCC--------ChhcccC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Q psy6910 1059 ALFVLQIAEN--------GPAALDG-HLKVGDEIVEINGINTKNMTHAEAIEIIRN-GDSTVRLLIKRGGS 1119 (1145)
Q Consensus 1059 ~v~V~~V~~g--------g~A~~~G-~L~~GD~Il~ING~~v~~~s~~eav~~lk~-~~~~v~L~v~R~~~ 1119 (1145)
+..|.+|.++ ||-.+.| .+++||.|++|||+++.. -.....+|.. ++..|.|+|.+.+.
T Consensus 13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~--~~~~~~lL~~~agk~V~Ltv~~~~~ 81 (88)
T PF14685_consen 13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTA--DANPYRLLEGKAGKQVLLTVNRKPG 81 (88)
T ss_dssp EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BT--TB-HHHHHHTTTTSEEEEEEE-STT
T ss_pred EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCC--CCCHHHHhcccCCCEEEEEEecCCC
Confidence 4668888886 5666655 256999999999999983 3456666776 55679999988764
No 129
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=95.55 E-value=0.038 Score=61.00 Aligned_cols=57 Identities=25% Similarity=0.473 Sum_probs=53.8
Q ss_pred cEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEEEeC
Q psy6910 462 FLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522 (1145)
Q Consensus 462 ~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 522 (1145)
++||.+|..++|| .|.|+.||.|.+|||+.+. +.+|.+..+++.+.|+.|++..+|.
T Consensus 131 gvyv~~v~~~~~~--~gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~ 187 (342)
T COG3480 131 GVYVLSVIDNSPF--KGKLEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERH 187 (342)
T ss_pred eEEEEEccCCcch--hceeccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEec
Confidence 5999999999999 6999999999999999998 7789999999999999999999986
No 130
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=95.24 E-value=0.049 Score=57.53 Aligned_cols=83 Identities=22% Similarity=0.315 Sum_probs=65.8
Q ss_pred cccCCCCcCccceEEEEEEecccceeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHH
Q psy6910 424 FFTLNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMV 503 (1145)
Q Consensus 424 ~~~~~p~~~~g~~~~v~l~k~~~glG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~ 503 (1145)
..++||.++=-.+.-+.+.++..=+|+.+.-|++. +.-++.| ||+||..++||+.++. .-+++.
T Consensus 183 alakdpqkif~yIrltpv~r~eki~Gyr~~pgkd~-------------slF~~sg-lq~GDIavaiNnldlt--dp~~m~ 246 (275)
T COG3031 183 ALAKDPQKIFTYIRLTPVIRNEKIEGYRFEPGKDG-------------SLFYKSG-LQRGDIAVAINNLDLT--DPEDMF 246 (275)
T ss_pred hhccCHHHHhhheEeeeEeeCCceEEEEecCCCCc-------------chhhhhc-CCCcceEEEecCcccC--CHHHHH
Confidence 55677877766677777777777899999888776 2234457 9999999999999987 467778
Q ss_pred HHHhcCCCCCeEEEEEEeC
Q psy6910 504 SVFQSISPGETVQLEVCRG 522 (1145)
Q Consensus 504 ~~l~~~~~g~~v~l~v~R~ 522 (1145)
.+|+.++.-+.+.|+|.|+
T Consensus 247 ~llq~l~~m~s~qlTv~R~ 265 (275)
T COG3031 247 RLLQMLRNMPSLQLTVIRR 265 (275)
T ss_pred HHHHhhhcCcceEEEEEec
Confidence 8888887778999999886
No 131
>KOG3129|consensus
Probab=95.10 E-value=0.043 Score=56.84 Aligned_cols=61 Identities=28% Similarity=0.424 Sum_probs=47.7
Q ss_pred CccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCC-HHHHHHHHhcCCCCCeEEEEEEeC
Q psy6910 460 EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYT-HHDMVSVFQSISPGETVQLEVCRG 522 (1145)
Q Consensus 460 ~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~-~~~~~~~l~~~~~g~~v~l~v~R~ 522 (1145)
..+++|.+|.|++||+..| |+.||.||++..+.-.+.. ..+.-...++ ..+..|.++|.|.
T Consensus 138 ~~Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~-~e~~~v~v~v~R~ 199 (231)
T KOG3129|consen 138 RPFAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQS-NEDQIVSVTVIRE 199 (231)
T ss_pred cceEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHh-ccCcceeEEEecC
Confidence 4579999999999999999 9999999999887766644 3343333333 3678899999887
No 132
>PRK00098 GTPase RsgA; Reviewed
Probab=95.06 E-value=0.013 Score=66.69 Aligned_cols=79 Identities=15% Similarity=0.066 Sum_probs=63.5
Q ss_pred CCchHHHHhhhhccCcceeecc-------cccCCCCCCCcC------------CccEEEeCHHHHHHHHHc-CCEEEEEE
Q psy6910 126 KGSVDHDLQNIIRDNLYLRTVP-------VTTRTPRDGELN------------GVDYTFLSIEEFKQLEKS-GCLLESGL 185 (1145)
Q Consensus 126 k~~i~~~l~~~~~~~~~~~~v~-------~TTR~~r~~E~~------------g~~Y~fvs~~~f~~~~~~-~~flE~~~ 185 (1145)
|++++..|....... . ..|+ ||||.++..+++ +.+|++++.+++.+.... ..|.++..
T Consensus 177 KStlin~l~~~~~~~-~-g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~f~~~~~~~~~c~ 254 (298)
T PRK00098 177 KSTLLNALAPDLELK-T-GEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEHYFPEFRPLSGDCK 254 (298)
T ss_pred HHHHHHHHhCCcCCC-C-cceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 888998887653222 2 2444 799998887777 778899999998888765 77888888
Q ss_pred eCC-cccCCCccchhhhhcCCC
Q psy6910 186 YEG-NHYGTPKPVKEPYVSLPQ 206 (1145)
Q Consensus 186 ~~g-~~YGt~~~~i~~~~~~g~ 206 (1145)
|++ .+|++|.-+|++++++|+
T Consensus 255 f~~c~h~~ep~c~v~~a~~~g~ 276 (298)
T PRK00098 255 FRNCTHLHEPGCAVKAAVEEGE 276 (298)
T ss_pred CCCCcCCCCCCChHHHHHHcCC
Confidence 888 899999999999999988
No 133
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=95.03 E-value=0.037 Score=64.97 Aligned_cols=68 Identities=25% Similarity=0.341 Sum_probs=51.9
Q ss_pred EEecccceeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEEE
Q psy6910 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVC 520 (1145)
Q Consensus 441 l~k~~~glG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v~ 520 (1145)
+......||+.+..- .+...|..|.++|||.++| |.+||.||.|||. -..|.....+..|.+++.
T Consensus 446 ~~~~~~~LGl~v~~~----~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~----------s~~l~~~~~~d~i~v~~~ 510 (558)
T COG3975 446 KPREAYYLGLKVKSE----GGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI----------SDQLDRYKVNDKIQVHVF 510 (558)
T ss_pred cCCCCcccceEeccc----CCeeEEEecCCCChhHhcc-CCCccEEEEEcCc----------cccccccccccceEEEEc
Confidence 333445799888554 3458999999999999999 9999999999999 223334456788888887
Q ss_pred eCC
Q psy6910 521 RGY 523 (1145)
Q Consensus 521 R~~ 523 (1145)
|.-
T Consensus 511 ~~~ 513 (558)
T COG3975 511 REG 513 (558)
T ss_pred cCC
Confidence 763
No 134
>KOG1738|consensus
Probab=94.91 E-value=0.031 Score=66.78 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=63.1
Q ss_pred ecccceeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEEEeC
Q psy6910 443 KSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522 (1145)
Q Consensus 443 k~~~glG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 522 (1145)
|-..|+|+-|-.--+ +..+|.++++++||+.++.|..||+|+.||+..+.|..+..+|+.|+..+.| .+.++..|.
T Consensus 210 kp~eglg~~I~Ssyd---g~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sg-i~l~lkKrp 285 (638)
T KOG1738|consen 210 SPSEGLGLYIDSSYD---GPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAG-IELTLKKRP 285 (638)
T ss_pred CcccCCceEEeeecC---CceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCccc-ceeeeeccC
Confidence 455689998866543 3689999999999999999999999999999999999999999999998876 233333443
No 135
>KOG3532|consensus
Probab=94.89 E-value=0.069 Score=63.58 Aligned_cols=67 Identities=22% Similarity=0.390 Sum_probs=56.3
Q ss_pred ceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy6910 1044 GFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116 (1145)
Q Consensus 1044 ~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~~~v~L~v~R 1116 (1145)
.+|+.+.... +..+.|..|.++++|.++. +++||++++|||.++. +..++...++...+.+...+.|
T Consensus 387 ~ig~vf~~~~---~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~ 453 (1051)
T KOG3532|consen 387 PIGLVFDKNT---NRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVER 453 (1051)
T ss_pred ceeEEEecCC---ceEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcccceEEEEee
Confidence 4666554332 5678899999999999999 9999999999999998 8899999999987777766665
No 136
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=94.70 E-value=0.087 Score=58.24 Aligned_cols=57 Identities=25% Similarity=0.490 Sum_probs=50.4
Q ss_pred ccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHc--CCCeEEEEEEeCC
Q psy6910 1058 MALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRN--GDSTVRLLIKRGG 1118 (1145)
Q Consensus 1058 ~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~--~~~~v~L~v~R~~ 1118 (1145)
.|+|+..|..+++|. |.|+.||.|++|||+++. +.+|++..+++ .|+.|+|.++|.+
T Consensus 130 ~gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~~ 188 (342)
T COG3480 130 AGVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERHN 188 (342)
T ss_pred eeEEEEEccCCcchh--ceeccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEecc
Confidence 479999999999995 679999999999999998 88999999997 4678999999744
No 137
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=94.48 E-value=0.061 Score=59.50 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=41.0
Q ss_pred cccCCCCCCCEEEEECCEecCCCCHHHHHHHHhcCCCCceEEEEEEcCCC
Q psy6910 630 QRCKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRL 679 (1145)
Q Consensus 630 ~~~g~L~~GD~Il~INg~~v~~~s~~ea~~~Lk~~~~g~~v~L~v~R~~~ 679 (1145)
....+|++||++++|||.++.+ -+++.+++++.....+++|+|.|++.
T Consensus 220 F~~~GLq~GDva~sING~dL~D--~~qa~~l~~~L~~~tei~ltVeRdGq 267 (276)
T PRK09681 220 FDASGFKEGDIAIALNQQDFTD--PRAMIALMRQLPSMDSIQLTVLRKGA 267 (276)
T ss_pred HHHcCCCCCCEEEEeCCeeCCC--HHHHHHHHHHhccCCeEEEEEEECCE
Confidence 4567999999999999999995 45777777777777899999999985
No 138
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=0.11 Score=60.67 Aligned_cols=59 Identities=36% Similarity=0.571 Sum_probs=52.2
Q ss_pred ccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEEEeC
Q psy6910 461 EFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522 (1145)
Q Consensus 461 ~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 522 (1145)
.+++|..|.++|||++.| |++||.|+++||..+. +..+....+.....|..+.+.+.|+
T Consensus 270 ~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~--~~~~l~~~v~~~~~g~~v~~~~~r~ 328 (347)
T COG0265 270 AGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVA--SLSDLVAAVASNRPGDEVALKLLRG 328 (347)
T ss_pred CceEEEecCCCChHHHcC-CCCCCEEEEECCEEcc--CHHHHHHHHhccCCCCEEEEEEEEC
Confidence 359999999999999999 9999999999999998 4557777777766899999999997
No 139
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.12 Score=60.32 Aligned_cols=61 Identities=28% Similarity=0.453 Sum_probs=52.2
Q ss_pred cccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC--CCeEEEEEEeCCCc
Q psy6910 1057 NMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNG--DSTVRLLIKRGGSV 1120 (1145)
Q Consensus 1057 ~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~--~~~v~L~v~R~~~~ 1120 (1145)
..+++|..|.+++||+++| ++.||.|+++||..+. +..+....+... +..+.+.+.|+++.
T Consensus 269 ~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~--~~~~l~~~v~~~~~g~~v~~~~~r~g~~ 331 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVA--SLSDLVAAVASNRPGDEVALKLLRGGKE 331 (347)
T ss_pred CCceEEEecCCCChHHHcC-CCCCCEEEEECCEEcc--CHHHHHHHHhccCCCCEEEEEEEECCEE
Confidence 4579999999999999999 9999999999999998 667777777753 45799999998654
No 140
>KOG3532|consensus
Probab=93.96 E-value=0.13 Score=61.29 Aligned_cols=69 Identities=22% Similarity=0.322 Sum_probs=54.5
Q ss_pred cceeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEEEeC
Q psy6910 446 RGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522 (1145)
Q Consensus 446 ~glG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 522 (1145)
..+|+...... ...+.|-.|.++++|.++. +++||+||+|||+++. +..++...++... | .|...+.|+
T Consensus 386 ~~ig~vf~~~~---~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~-~-~~~~l~~~~ 454 (1051)
T KOG3532|consen 386 SPIGLVFDKNT---NRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTT-G-DLTVLVERS 454 (1051)
T ss_pred CceeEEEecCC---ceEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcc-c-ceEEEEeec
Confidence 45777665543 3479999999999999887 9999999999999998 7889999999964 4 444445554
No 141
>KOG1738|consensus
Probab=93.38 E-value=0.15 Score=61.17 Aligned_cols=73 Identities=21% Similarity=0.329 Sum_probs=62.2
Q ss_pred CCcceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEe
Q psy6910 1041 GTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116 (1145)
Q Consensus 1041 ~~~~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~~~v~L~v~R 1116 (1145)
...+||+-|...- +...+|..+.++++|...+.|..||+|++||+..+.|+.+.-+|+.++....-|.++|+.
T Consensus 211 p~eglg~~I~Ssy---dg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkK 283 (638)
T KOG1738|consen 211 PSEGLGLYIDSSY---DGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKK 283 (638)
T ss_pred cccCCceEEeeec---CCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeec
Confidence 3457888876544 447889999999999999999999999999999999999999999999877667777653
No 142
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=92.96 E-value=0.091 Score=61.89 Aligned_cols=42 Identities=33% Similarity=0.472 Sum_probs=35.8
Q ss_pred cceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCE
Q psy6910 1043 RGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGI 1089 (1145)
Q Consensus 1043 ~~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~ 1089 (1145)
..||+.+... .....|..|.++|||.++| |.+||+|++|||.
T Consensus 451 ~~LGl~v~~~----~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~ 492 (558)
T COG3975 451 YYLGLKVKSE----GGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI 492 (558)
T ss_pred cccceEeccc----CCeeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence 3678877543 3457899999999999999 9999999999999
No 143
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=92.94 E-value=0.4 Score=50.96 Aligned_cols=68 Identities=19% Similarity=0.340 Sum_probs=51.7
Q ss_pred EEeecCCcceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCC--CeEEEE
Q psy6910 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGD--STVRLL 1113 (1145)
Q Consensus 1036 v~l~k~~~~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~--~~v~L~ 1113 (1145)
..+.++..-+|+.+..+++ ++.-...| |+.||..++||+.++. +.+++..+|+.-. ..+.|+
T Consensus 198 tpv~r~eki~Gyr~~pgkd-------------~slF~~sg-lq~GDIavaiNnldlt--dp~~m~~llq~l~~m~s~qlT 261 (275)
T COG3031 198 TPVIRNEKIEGYRFEPGKD-------------GSLFYKSG-LQRGDIAVAINNLDLT--DPEDMFRLLQMLRNMPSLQLT 261 (275)
T ss_pred eeEeeCCceEEEEecCCCC-------------cchhhhhc-CCCcceEEEecCcccC--CHHHHHHHHHhhhcCcceEEE
Confidence 3344555668888777654 34455678 9999999999999998 7788888888643 559999
Q ss_pred EEeCCC
Q psy6910 1114 IKRGGS 1119 (1145)
Q Consensus 1114 v~R~~~ 1119 (1145)
|.|++.
T Consensus 262 v~R~G~ 267 (275)
T COG3031 262 VIRRGK 267 (275)
T ss_pred EEecCc
Confidence 999885
No 144
>KOG1320|consensus
Probab=90.17 E-value=0.58 Score=55.58 Aligned_cols=59 Identities=24% Similarity=0.333 Sum_probs=50.9
Q ss_pred ccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEEEEEEeC
Q psy6910 461 EFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522 (1145)
Q Consensus 461 ~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 522 (1145)
+.++|..|.|++++..-+ +++||+|++|||+.+.++ .++..+++.+-.++.|.+..+|+
T Consensus 398 q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~--~~l~~~i~~~~~~~~v~vl~~~~ 456 (473)
T KOG1320|consen 398 QLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNL--KHLYELIEECSTEDKVAVLDRRS 456 (473)
T ss_pred eEEEEEEeccCCCccccc-ccCCCEEEEECCEEeech--HHHHHHHHhcCcCceEEEEEecC
Confidence 358999999999999766 999999999999999976 57888888877677888888776
No 145
>PRK00698 tmk thymidylate kinase; Validated
Probab=89.53 E-value=0.17 Score=53.98 Aligned_cols=126 Identities=10% Similarity=-0.029 Sum_probs=78.1
Q ss_pred CCcEEEEEecCCccCcccchhccccCCCCchHHHHhhhhccCcceeecccccCCCCCCCcCCccEEEeCHHHHHHHHH--
Q psy6910 99 GKTLTLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEK-- 176 (1145)
Q Consensus 99 ~~~v~~~~~p~~~~~~~~~~~~~l~f~k~~i~~~l~~~~~~~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~~-- 176 (1145)
+|.+....+|.+++ |+|+++.|.+.+... . ..-++++.|+ ++.. .+.|.+++.
T Consensus 2 ~~~~I~ieG~~gsG-------------KsT~~~~L~~~l~~~--~-~~~~~~~~p~-~~~~--------~~~~~~~~~~~ 56 (205)
T PRK00698 2 RGMFITIEGIDGAG-------------KSTQIELLKELLEQQ--G-RDVVFTREPG-GTPL--------GEKLRELLLDP 56 (205)
T ss_pred CceEEEEECCCCCC-------------HHHHHHHHHHHHHHc--C-CceeEeeCCC-CChH--------HHHHHHHHhcc
Confidence 56677777887775 889998888775321 1 2345677777 3333 367777776
Q ss_pred cCCEEEEEEe---CCcccCCCccchhhhhcCCCCceeeec------CCCChh-------hhhhhhc-----cccccccee
Q psy6910 177 SGCLLESGLY---EGNHYGTPKPVKEPYVSLPQNVNLLPG------AHPSSE-------GKRKRNR-----SNVEAMASK 235 (1145)
Q Consensus 177 ~~~flE~~~~---~g~~YGt~~~~i~~~~~~g~~~~~il~------~~~~~~-------~~~~~~~-----~~~~~~~~i 235 (1145)
...+.++..+ -.+.|+.....|...+.+|+ ++|+| +..+.. -...+.+ ..|+. +|
T Consensus 57 ~~~~~~~~~~~~~~~~r~~~~~~~i~~~l~~g~--~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~--~i 132 (205)
T PRK00698 57 NEEMDDKTELLLFYAARAQHLEEVIKPALARGK--WVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDL--TL 132 (205)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCE--EE
Confidence 3444444332 25668888777888888866 88887 212111 1112222 22443 67
Q ss_pred EecCCChhhhhhhhhccCC
Q psy6910 236 SIEPDMKTNGFDNKTVNMG 254 (1145)
Q Consensus 236 fi~pps~~~l~~rl~~rg~ 254 (1145)
|+..|. +++.+|+.+|+.
T Consensus 133 ~l~~~~-~~~~~Rl~~R~~ 150 (205)
T PRK00698 133 YLDVPP-EVGLARIRARGE 150 (205)
T ss_pred EEeCCH-HHHHHHHHhcCC
Confidence 777776 889999999974
No 146
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=89.45 E-value=0.11 Score=58.90 Aligned_cols=63 Identities=19% Similarity=0.303 Sum_probs=45.5
Q ss_pred CCCceeeeCCCCceEEEeCCCceeeCcCCccccccCCCCCCCCCCCCCCCc-ccCCCCcccCCCCCCCc
Q psy6910 343 PYGWERIDDPAYGTYYIDHVNKQTQYENPVLQAKHRDQGAGPSEMDDNEHK-VKDSPGKRIAPQARNTL 410 (1145)
Q Consensus 343 P~gWe~~~~~~g~~yyinh~~k~t~~~~P~~~~~~~~~~~~~~~~~p~~w~-~~~~~g~~~~~~h~~~~ 410 (1145)
-.-|++..+++|++||+|..|+..+|+.|.--.... ... -.-.+|. ..+++|+.||-|.....
T Consensus 14 ~s~w~e~k~~dgRiYYYN~~T~kS~weKPkell~~~---e~~--l~~~~Wke~~TadGkvyyyN~~TRE 77 (590)
T COG5104 14 RSEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKGS---EED--LDVDPWKECRTADGKVYYYNSITRE 77 (590)
T ss_pred HHHHHHhhCCCCceEEEecccccccccChHHHhcch---Hhh--hchhhHHHHhhcCCceEEecCcccc
Confidence 345999999999999999999999999994222111 001 1123699 88999999998754443
No 147
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.06 E-value=0.091 Score=66.93 Aligned_cols=81 Identities=21% Similarity=0.422 Sum_probs=67.0
Q ss_pred CCCCCCCcEEEEccCCceEeeeCCCCceeccCCcchhcc-------------cccccCCCCCCCCCceeeeCCCCceEEE
Q psy6910 293 LGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRLCKFQ-------------KKLEDCSDDELPYGWERIDDPAYGTYYI 359 (1145)
Q Consensus 293 ~~pLP~gWe~~~~~~Gr~yyidh~t~tT~W~~Pr~~~~~-------------~~~~~~~~~~LP~gWe~~~~~~g~~yyi 359 (1145)
....|++|+..+.+.++.|+++|.+.+++|.+|+..... .........+++.+|+.+.....+.|+.
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~ 464 (872)
T COG5021 385 FRNKPTGWSSSIEDLGQFLFSDFLTSSSTYEDLRREQLGRESDESFYVASNVQQQRASREGPLLSGWKTRLNNLYRFYFV 464 (872)
T ss_pred hhcCCccchhhhhhhHHHHHhhhhcchhhhhchhhhhhhhhhccchhhhcccccccccccccccchHHHHhhhhheeeeh
Confidence 356899999999999999999999999999999753110 0011133568999999999999999999
Q ss_pred eCCCceeeCcCCcc
Q psy6910 360 DHVNKQTQYENPVL 373 (1145)
Q Consensus 360 nh~~k~t~~~~P~~ 373 (1145)
.|.+++++|.++++
T Consensus 465 ~h~k~~~~~~~~~~ 478 (872)
T COG5021 465 EHRKKTLTKNDSRL 478 (872)
T ss_pred hcccceeeecCCCC
Confidence 99999999999984
No 148
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.16 E-value=0.084 Score=67.21 Aligned_cols=126 Identities=16% Similarity=0.163 Sum_probs=88.2
Q ss_pred CccccCCCCCCCCcEEEEccCCceEeeeCCCCceeccCCcchhc---------cc--------ccccCC-----------
Q psy6910 287 PLLELDLGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRLCKF---------QK--------KLEDCS----------- 338 (1145)
Q Consensus 287 ~~~~~~~~pLP~gWe~~~~~~Gr~yyidh~t~tT~W~~Pr~~~~---------~~--------~~~~~~----------- 338 (1145)
+...+..+.+++.|+...+.-|+.||++|++..++|..|..... .. ....+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~ 369 (872)
T COG5021 290 SSFEDSLLRLNSLFSTRADSFGRTYYLDHDRILTQYSRPLLEETLGESTSFLVVNNDDSSSIKDLPHQVGSNPFLEAHPE 369 (872)
T ss_pred hhhhhhcccccccccchhhhcchhhhhhhhhhhhhhhhccchhhhhhhhhhccccccchhhhhhcccccCCcccccccHH
Confidence 34667889999999999999999999999999999999942210 00 000000
Q ss_pred ---------------CCCCCCCceeeeCCCCceEEEeCCCceeeCcCCccccccCC------------CCC-CCCCCCCC
Q psy6910 339 ---------------DDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQAKHRD------------QGA-GPSEMDDN 390 (1145)
Q Consensus 339 ---------------~~~LP~gWe~~~~~~g~~yyinh~~k~t~~~~P~~~~~~~~------------~~~-~~~~~~p~ 390 (1145)
....|.+|+......++.++++|.+..+.|++|+-+..-.. +.. ...++++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 449 (872)
T COG5021 370 FSELLKNQSRGTTRDFRNKPTGWSSSIEDLGQFLFSDFLTSSSTYEDLRREQLGRESDESFYVASNVQQQRASREGPLLS 449 (872)
T ss_pred HHHHHhhhcccccchhhcCCccchhhhhhhHHHHHhhhhcchhhhhchhhhhhhhhhccchhhhcccccccccccccccc
Confidence 12568899999999999999999999999999975322111 111 23457777
Q ss_pred CCc-ccCCCCcccCCCCCCCccc
Q psy6910 391 EHK-VKDSPGKRIAPQARNTLVS 412 (1145)
Q Consensus 391 ~w~-~~~~~g~~~~~~h~~~~~s 412 (1145)
+|+ +....-+.++..|......
T Consensus 450 ~~~~r~~~~~~~~~~~h~k~~~~ 472 (872)
T COG5021 450 GWKTRLNNLYRFYFVEHRKKTLT 472 (872)
T ss_pred hHHHHhhhhheeeehhcccceee
Confidence 888 6666666776666555443
No 149
>PF12812 PDZ_1: PDZ-like domain
Probab=86.36 E-value=1.3 Score=39.66 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=34.9
Q ss_pred eEEEEecCCccccccCCCCCCcEEEeeCCEEecCCCHHHHHHHHHhh
Q psy6910 49 AYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGYTRRDTIAWLNHC 95 (1145)
Q Consensus 49 ~~v~~i~~~~~~~~sg~l~~GD~i~evng~~v~g~~~~~~~~~l~~~ 95 (1145)
.+|++ .+|....+|.+..|-+|.+|||+++. +++++++++++.
T Consensus 33 v~v~~--~~g~~~~~~~i~~g~iI~~Vn~kpt~--~Ld~f~~vvk~i 75 (78)
T PF12812_consen 33 VYVAV--SGGSLAFAGGISKGFIITSVNGKPTP--DLDDFIKVVKKI 75 (78)
T ss_pred EEEEe--cCCChhhhCCCCCCeEEEeECCcCCc--CHHHHHHHHHhC
Confidence 44554 34444456669999999999999999 999999999987
No 150
>PF12812 PDZ_1: PDZ-like domain
Probab=84.01 E-value=2.5 Score=37.82 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=38.2
Q ss_pred cEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCC
Q psy6910 1059 ALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDS 1108 (1145)
Q Consensus 1059 ~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~~ 1108 (1145)
+.++.....++++..-| +..|-.|.+|||+++. +.+++++++++-++
T Consensus 31 ~gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~--~Ld~f~~vvk~ipd 77 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTP--DLDDFIKVVKKIPD 77 (78)
T ss_pred CEEEEEecCCChhhhCC-CCCCeEEEeECCcCCc--CHHHHHHHHHhCCC
Confidence 35566667788887666 9999999999999998 77888888887654
No 151
>KOG0940|consensus
Probab=82.71 E-value=1.4 Score=51.09 Aligned_cols=74 Identities=15% Similarity=-0.025 Sum_probs=55.6
Q ss_pred CCCCCCCCceeeeCCCC---ceEEEeCCCc-eeeCcCCccccccCCCCCC---CC--CCCCCCCc-ccCCCCcccCCCCC
Q psy6910 338 SDDELPYGWERIDDPAY---GTYYIDHVNK-QTQYENPVLQAKHRDQGAG---PS--EMDDNEHK-VKDSPGKRIAPQAR 407 (1145)
Q Consensus 338 ~~~~LP~gWe~~~~~~g---~~yyinh~~k-~t~~~~P~~~~~~~~~~~~---~~--~~~p~~w~-~~~~~g~~~~~~h~ 407 (1145)
....||.+|+...+..+ ..||.+|.+. .|+|.+|... ....+... .. .++| +|+ .+++.|.+||.+|-
T Consensus 57 dy~glprewf~~lS~e~~~p~~~~~~~~~~~~tlq~~P~sg-~~p~~l~~~~~vg~~~~l~-~~h~~~~~~g~r~F~~~i 134 (358)
T KOG0940|consen 57 DYGGLPREWFFLLSHEGFNPWYGLFQHSRKDYTLWLNPRSG-VNPGHLTYFRFVGGVLALA-GWHMRFTDTGQRPFYKHI 134 (358)
T ss_pred ccCCCCcceeeeeccccCCcceeeeeecccccccccCCccC-CCCCccccccccccccccc-ceeeEecCCCceehhhhh
Confidence 34689999999999988 8899999999 5999999887 33322111 11 1233 799 88888899999998
Q ss_pred CCcccc
Q psy6910 408 NTLVST 413 (1145)
Q Consensus 408 ~~~~s~ 413 (1145)
...+..
T Consensus 135 ~~ktt~ 140 (358)
T KOG0940|consen 135 LKKTTT 140 (358)
T ss_pred hcCccc
Confidence 777765
No 152
>KOG4286|consensus
Probab=80.27 E-value=0.51 Score=57.32 Aligned_cols=29 Identities=31% Similarity=0.853 Sum_probs=27.1
Q ss_pred cEEEEccCCceEeeeCCCCceeccCCcch
Q psy6910 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRLC 328 (1145)
Q Consensus 300 We~~~~~~Gr~yyidh~t~tT~W~~Pr~~ 328 (1145)
|+.+++++--+|||||.|++|+|.+|...
T Consensus 354 w~rais~nkvpyyinh~~q~t~wdhp~~t 382 (966)
T KOG4286|consen 354 WERAISPNKVPYYINHETQTTCWDHPKMT 382 (966)
T ss_pred chhccCccccchhhcccchhhhccchHHH
Confidence 99999999999999999999999999643
No 153
>PLN02840 tRNA dimethylallyltransferase
Probab=79.88 E-value=0.44 Score=56.18 Aligned_cols=87 Identities=13% Similarity=0.192 Sum_probs=65.1
Q ss_pred CCcEEEEEecCCccCcccchhccccCCCCchHHHHhhhhcc--------CcceeecccccCCCCCCCcCCccEEEeCHHH
Q psy6910 99 GKTLTLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRD--------NLYLRTVPVTTRTPRDGELNGVDYTFLSIEE 170 (1145)
Q Consensus 99 ~~~v~~~~~p~~~~~~~~~~~~~l~f~k~~i~~~l~~~~~~--------~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~ 170 (1145)
.+.+.+.++|.+++ |+++...|.+.+.. .+| +-+..+|++|...|.+++.||||+.-.
T Consensus 20 ~~~vi~I~GptgsG-------------KTtla~~La~~~~~~iis~Ds~qvY-r~~~IgTaKpt~eE~~~V~Hhlidil~ 85 (421)
T PLN02840 20 KEKVIVISGPTGAG-------------KSRLALELAKRLNGEIISADSVQVY-RGLDVGSAKPSLSERKEVPHHLIDILH 85 (421)
T ss_pred CCeEEEEECCCCCC-------------HHHHHHHHHHHCCCCeEecccccee-cceeEEcCCCCHHHHcCCCeEeEeecC
Confidence 45667777787775 66777777666421 234 488899999999999999999998765
Q ss_pred HHHHHHcCCEEEEEEeC-CcccCCCccchhhhhcCCCCceeee
Q psy6910 171 FKQLEKSGCLLESGLYE-GNHYGTPKPVKEPYVSLPQNVNLLP 212 (1145)
Q Consensus 171 f~~~~~~~~flE~~~~~-g~~YGt~~~~i~~~~~~g~~~~~il 212 (1145)
..+ +|. +.|+....+.|+.+.+.|+ +.|+
T Consensus 86 p~e-----------~ySv~~F~~~A~~~I~~i~~rgk--iPIv 115 (421)
T PLN02840 86 PSD-----------DYSVGAFFDDARRATQDILNRGR--VPIV 115 (421)
T ss_pred CCC-----------ceeHHHHHHHHHHHHHHHHhcCC--CEEE
Confidence 542 343 6677888999999999988 6665
No 154
>KOG0707|consensus
Probab=77.30 E-value=0.25 Score=52.87 Aligned_cols=192 Identities=12% Similarity=0.071 Sum_probs=124.9
Q ss_pred cccccccCCCccccceEeEEEe-CCCCCC-CceeeeccccCCCceEEEEecC--Cccccc--cC-CCCCCcEEEeeCCEE
Q psy6910 7 KLDNLTAGGTHWQDKETPVTLT-VPPDGS-LNFSVGGGSDSGEFAYVTNINK--EKVKGA--EK-YLEEKAIILEIQGQK 79 (1145)
Q Consensus 7 ~~~~~~~~~~~~~~~v~~~~~~-~~~~g~-~~~~i~gg~e~g~~~~v~~i~~--~~~~~~--sg-~l~~GD~i~evng~~ 79 (1145)
++++......+|...++.+.+. -..-|. .++.|.|.++.|+.-++.+++. +++.+= |. .=.+++.-++.++..
T Consensus 8 ~~~~~~~~~~~~~s~~~~~~~~~~~~p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~ 87 (231)
T KOG0707|consen 8 SVLKPISESEKEVSRVDSSAVSPQTPPGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYH 87 (231)
T ss_pred ccchhHHhhhhhccchhhheeccccCCCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcce
Confidence 4667788889999999999988 455666 8999999999999999998765 332211 11 112666666677777
Q ss_pred ecCCCHHHHHHHHHhhcCCCCcEEEEEecCCc-cCcccchhccccCCCCchHHHHhhhhccC----ccee--ecccccCC
Q psy6910 80 VAGYTRRDTIAWLNHCCRSGKTLTLRTVSSAY-VTTDLRQFLNTRFPKGSVDHDLQNIIRDN----LYLR--TVPVTTRT 152 (1145)
Q Consensus 80 v~g~~~~~~~~~l~~~~~~~~~v~~~~~p~~~-~~~~~~~~~~l~f~k~~i~~~l~~~~~~~----~~~~--~v~~TTR~ 152 (1145)
+. +.++...++.+. .--..+++.-.-.|. .....+.++-..+...+|.++..+..+.. +|-+ +.+.+++.
T Consensus 88 fs--~~~~~~s~i~~~-~fiE~a~~~gn~yGtsi~av~~~~~~gk~~ildId~qg~~~i~~~~~~~i~i~~~pps~~~~e 164 (231)
T KOG0707|consen 88 FS--TTEEFLSMIKNN-EFIEFATFSGNKYGTSIAAVQRLMLSGKVCILDIDLQGVQPIRATSLDAIYIFIKPPSIKILE 164 (231)
T ss_pred ec--cHHHHHHHhhhh-hhhhhhhhhcccCCchHHHHHHHHhcCCcceeehhhcCceeeecCCCceEEEEecCCcchhHH
Confidence 77 666666666554 002222222222121 22344566778888888887665554333 4443 78999999
Q ss_pred CCCCCcCCccEEEeCHHHHH-HHHHcCCEEEEEEeCCcccCCCccchhhhhcC
Q psy6910 153 PRDGELNGVDYTFLSIEEFK-QLEKSGCLLESGLYEGNHYGTPKPVKEPYVSL 204 (1145)
Q Consensus 153 ~r~~E~~g~~Y~fvs~~~f~-~~~~~~~flE~~~~~g~~YGt~~~~i~~~~~~ 204 (1145)
+|-.+. |.+|.+..-..|. +..+-+.-.+-+.|+..+|++ +.++++-++
T Consensus 165 ~rl~~r-gte~~~~l~~r~~sa~~e~~~~~~~g~~d~~~~ns--~~lee~~ke 214 (231)
T KOG0707|consen 165 ERLRAR-GTETEESLLKRLKSAEEEFEILENSGSFDLVIVNS--DRLEEAYKE 214 (231)
T ss_pred HHhhcc-CcchHHHHHHHHHhhhhhhccccCCccccceecCC--Cchhhhhhh
Confidence 999988 9998887776676 333334444457788888887 455544444
No 155
>KOG0792|consensus
Probab=76.99 E-value=1.2 Score=56.68 Aligned_cols=71 Identities=21% Similarity=0.304 Sum_probs=58.9
Q ss_pred EEEeCCCCCCCceeeeccccCC-----CceEEEEec-------------CCcccccc-CCCCCCcEEEeeCCEEecCCCH
Q psy6910 25 VTLTVPPDGSLNFSVGGGSDSG-----EFAYVTNIN-------------KEKVKGAE-KYLEEKAIILEIQGQKVAGYTR 85 (1145)
Q Consensus 25 ~~~~~~~~g~~~~~i~gg~e~g-----~~~~v~~i~-------------~~~~~~~s-g~l~~GD~i~evng~~v~g~~~ 85 (1145)
+.|.+++.|.+||.++||.|.- +-..++|++ .+.-+|.- =.+.+||+++-|||..+.....
T Consensus 708 ~~~~~~~~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~ 787 (1144)
T KOG0792|consen 708 SYLAEDPPGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEH 787 (1144)
T ss_pred cccccCCCccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccc
Confidence 3444455999999999999998 667788988 55555443 3899999999999999999999
Q ss_pred HHHHHHHHhh
Q psy6910 86 RDTIAWLNHC 95 (1145)
Q Consensus 86 ~~~~~~l~~~ 95 (1145)
+.+..+|+++
T Consensus 788 ~~~vs~irs~ 797 (1144)
T KOG0792|consen 788 DQVVSLIRSP 797 (1144)
T ss_pred cchHHHHhhh
Confidence 9999999888
No 156
>KOG0792|consensus
Probab=75.69 E-value=3 Score=53.29 Aligned_cols=65 Identities=29% Similarity=0.433 Sum_probs=56.4
Q ss_pred cc-eeEEEecCCCCC----CccEEEEEec-------------cCCccccc-CCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy6910 446 RG-LGFTIVGGDDSK----EEFLQIKSVV-------------PNGPAALE-GHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506 (1145)
Q Consensus 446 ~g-lG~~i~gg~~~~----~~~i~V~~v~-------------~~g~A~~~-g~l~~GD~il~vNg~~~~~~~~~~~~~~l 506 (1145)
.| +||.+.||.+.. ..++.+..|. |+++|+.+ -++..||+++.|||.++....|..+|.++
T Consensus 715 ~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~i 794 (1144)
T KOG0792|consen 715 PGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLI 794 (1144)
T ss_pred CccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHH
Confidence 44 999999998861 3678888998 99999766 48899999999999999999999999999
Q ss_pred hcCC
Q psy6910 507 QSIS 510 (1145)
Q Consensus 507 ~~~~ 510 (1145)
++..
T Consensus 795 rs~r 798 (1144)
T KOG0792|consen 795 RSPR 798 (1144)
T ss_pred hhhh
Confidence 9843
No 157
>KOG4286|consensus
Probab=75.48 E-value=0.91 Score=55.31 Aligned_cols=29 Identities=34% Similarity=0.730 Sum_probs=27.0
Q ss_pred CceeeeCCCCceEEEeCCCceeeCcCCcc
Q psy6910 345 GWERIDDPAYGTYYIDHVNKQTQYENPVL 373 (1145)
Q Consensus 345 gWe~~~~~~g~~yyinh~~k~t~~~~P~~ 373 (1145)
+|+....++--+|||||.+++|+|+||..
T Consensus 353 pw~rais~nkvpyyinh~~q~t~wdhp~~ 381 (966)
T KOG4286|consen 353 PWERAISPNKVPYYINHETQTTCWDHPKM 381 (966)
T ss_pred cchhccCccccchhhcccchhhhccchHH
Confidence 59999999888999999999999999975
No 158
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=67.95 E-value=36 Score=35.62 Aligned_cols=84 Identities=13% Similarity=0.190 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHhccCCCeEEEEEeeccCCCCcccccCCCCCeEEEEeccCC-------CcccEEEeecCCCCCceEEEeC
Q psy6910 880 SSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSMMLGYPYDVTITRREN-------EGFGFVIISSLNKAGSTIGRII 952 (1145)
Q Consensus 880 ~s~~~~~~~L~~~~~~~~v~L~v~r~~~~~~~~~~~~~~~~~~V~l~r~~~-------~~lG~~l~~~~~~~g~~I~~v~ 952 (1145)
....+..+.+.+...++.+++.|.+.....+. ....|.+.-.+. ...|+.+.... ..+.|..|.
T Consensus 60 ~p~~~~~~~~~~~~~g~~lrl~V~G~~~~G~~-------~~k~v~lpl~~~~~g~eRL~~~GL~l~~e~--~~~~Vd~v~ 130 (183)
T PF11874_consen 60 VPPSELVQVAEQLPPGSSLRLRVEGPDFEGDP-------VTKTVLLPLGDGADGEERLEAAGLTLMEEG--GKVIVDEVE 130 (183)
T ss_pred CCHHHHHHHHhcCCCCCEEEEEEEccCCCCCc-------eEEEEEEEcCCCCCHHHHHHhCCCEEEeeC--CEEEEEecC
Confidence 35667777788887788999999886554211 123333332221 24688876533 367899999
Q ss_pred CCCcccccCCCCCCCEEEEEC
Q psy6910 953 EDSPADRSGELHLGDHILAVN 973 (1145)
Q Consensus 953 ~gs~A~~~G~L~~GD~Il~VN 973 (1145)
.||+|+++| +.-++.|++|-
T Consensus 131 fgS~A~~~g-~d~d~~I~~v~ 150 (183)
T PF11874_consen 131 FGSPAEKAG-IDFDWEITEVE 150 (183)
T ss_pred CCCHHHHcC-CCCCcEEEEEE
Confidence 999999999 99999998873
No 159
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=65.15 E-value=13 Score=43.68 Aligned_cols=53 Identities=26% Similarity=0.477 Sum_probs=43.4
Q ss_pred EEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcC-CCe---EEEEEEe
Q psy6910 1061 FVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNG-DST---VRLLIKR 1116 (1145)
Q Consensus 1061 ~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~-~~~---v~L~v~R 1116 (1145)
.+..+..+++|+.+| +++||+|+++|+..+. ++.++...+... +.. +.+.+.|
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVA--SWDDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEcc--CHHHHHHHHHhccCCcccceEEEEEe
Confidence 455799999999999 9999999999999998 677777777653 333 6788888
No 160
>KOG0155|consensus
Probab=64.52 E-value=5.7 Score=46.81 Aligned_cols=27 Identities=26% Similarity=0.635 Sum_probs=26.3
Q ss_pred cEEEEccCCceEeeeCCCCceeccCCc
Q psy6910 300 WEKAYTEKGEVYFIDHNSSTSSWLDPR 326 (1145)
Q Consensus 300 We~~~~~~Gr~yyidh~t~tT~W~~Pr 326 (1145)
|-.-+|.++|+||+|..|+-+.|..|-
T Consensus 116 WcVVwTgD~RvFFyNpktk~S~We~P~ 142 (617)
T KOG0155|consen 116 WCVVWTGDNRVFFYNPKTKLSVWERPL 142 (617)
T ss_pred eEEEEeCCCceEEeCCccccccccCch
Confidence 999999999999999999999999995
No 161
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=61.88 E-value=6.1 Score=41.20 Aligned_cols=117 Identities=12% Similarity=0.018 Sum_probs=67.0
Q ss_pred CcEEEEEecCCccCcccchhccccCCCCchHHHHhhhhccCcceeecccccCCCCCCCcCCccEEEeCHHHHHHHHH---
Q psy6910 100 KTLTLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEK--- 176 (1145)
Q Consensus 100 ~~v~~~~~p~~~~~~~~~~~~~l~f~k~~i~~~l~~~~~~~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~~--- 176 (1145)
|.|.|.-+||.++ |++|.+.|+..+ +. -|.-++-+.|..++-
T Consensus 1 g~iI~LNG~sSSG-------------KSsia~~Lq~~~-~~---------------------p~~~l~~D~f~~~~~~~~ 45 (174)
T PF07931_consen 1 GQIIILNGPSSSG-------------KSSIARALQERL-PE---------------------PWLHLSVDTFVDMMPPGR 45 (174)
T ss_dssp --EEEEEE-TTSS-------------HHHHHHHHHHHS-SS----------------------EEEEEHHHHHHHS-GGG
T ss_pred CeEEEEeCCCCCC-------------HHHHHHHHHHhC-cC---------------------CeEEEecChHHhhcCccc
Confidence 4677777887765 889999999885 22 234457777777433
Q ss_pred --cCCEEEEE-------EeCCcccCCCccchhhhhcCCCCceeeecCCCChhh--hhhhhccc-ccccceeEecCCChhh
Q psy6910 177 --SGCLLESG-------LYEGNHYGTPKPVKEPYVSLPQNVNLLPGAHPSSEG--KRKRNRSN-VEAMASKSIEPDMKTN 244 (1145)
Q Consensus 177 --~~~flE~~-------~~~g~~YGt~~~~i~~~~~~g~~~~~il~~~~~~~~--~~~~~~~~-~~~~~~ifi~pps~~~ 244 (1145)
.+.-++|. .....+|-.-...|....+.|. .+|+|--..... ...+++.+ ...+.+|-|.+| +++
T Consensus 46 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a~aG~--~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cp-lei 122 (174)
T PF07931_consen 46 YRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMARAGN--NVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCP-LEI 122 (174)
T ss_dssp GTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHHHTT---EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE---HHH
T ss_pred ccCCccccccccCCchhHHHHHHHHHHHHHHHHHHhCCC--CEEEecCccCcHHHHHHHHHHhCCCceEEEEEECC-HHH
Confidence 23345554 2223445556778888888855 888882211111 12232322 222226777777 589
Q ss_pred hhhhhhccCC
Q psy6910 245 GFDNKTVNMG 254 (1145)
Q Consensus 245 l~~rl~~rg~ 254 (1145)
+++|-+.||.
T Consensus 123 l~~RE~~RgD 132 (174)
T PF07931_consen 123 LERRERARGD 132 (174)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHhcCC
Confidence 9999999995
No 162
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=60.97 E-value=2.3 Score=42.20 Aligned_cols=114 Identities=11% Similarity=0.001 Sum_probs=65.6
Q ss_pred EEEEEecCCccCcccchhccccCCCCchHHHHhhhhccCcceeecccccCCCCCCCcCCccEEEeCHHHHHHHHHcCCEE
Q psy6910 102 LTLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLL 181 (1145)
Q Consensus 102 v~~~~~p~~~~~~~~~~~~~l~f~k~~i~~~l~~~~~~~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~~~~~fl 181 (1145)
|++.++|++++ |+++.+.|.+.. | |.+|+.+++...+....+-
T Consensus 1 lii~~G~pgsG-------------KSt~a~~l~~~~----------------------~--~~~i~~D~~~~~~~~~~~~ 43 (143)
T PF13671_consen 1 LIILCGPPGSG-------------KSTLAKRLAKRL----------------------G--AVVISQDEIRRRLAGEDPP 43 (143)
T ss_dssp EEEEEESTTSS-------------HHHHHHHHHHHS----------------------T--EEEEEHHHHHHHHCCSSSG
T ss_pred CEEEECCCCCC-------------HHHHHHHHHHHC----------------------C--CEEEeHHHHHHHHcccccc
Confidence 56777888775 788888777652 1 5677777777766552221
Q ss_pred E---EEEeCCcccCCCccchhhhhcCCCCceeeecCC-CChhh---hhhhhcccc-cccceeEecCCChhhhhhhhhccC
Q psy6910 182 E---SGLYEGNHYGTPKPVKEPYVSLPQNVNLLPGAH-PSSEG---KRKRNRSNV-EAMASKSIEPDMKTNGFDNKTVNM 253 (1145)
Q Consensus 182 E---~~~~~g~~YGt~~~~i~~~~~~g~~~~~il~~~-~~~~~---~~~~~~~~~-~~~~~ifi~pps~~~l~~rl~~rg 253 (1145)
. +.+.....|..-.+.++..++.|. .+|+|-. ..... ...+.+.+. ... .|++.+|. +++.+|+..|+
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~--~~vvd~~~~~~~~r~~~~~~~~~~~~~~~-~v~l~~~~-~~~~~R~~~R~ 119 (143)
T PF13671_consen 44 SPSDYIEAEERAYQILNAAIRKALRNGN--SVVVDNTNLSREERARLRELARKHGYPVR-VVYLDAPE-ETLRERLAQRN 119 (143)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHTT---EEEEESS--SHHHHHHHHHHHHHCTEEEE-EEEECHHH-HHHHHHHHTTH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHcCC--CceeccCcCCHHHHHHHHHHHHHcCCeEE-EEEEECCH-HHHHHHHHhcC
Confidence 1 111222334444456777778866 7787732 22221 122222222 334 67776655 99999999998
Q ss_pred CCC
Q psy6910 254 GNS 256 (1145)
Q Consensus 254 ~~s 256 (1145)
...
T Consensus 120 ~~~ 122 (143)
T PF13671_consen 120 REG 122 (143)
T ss_dssp CCC
T ss_pred Ccc
Confidence 644
No 163
>PRK14530 adenylate kinase; Provisional
Probab=58.31 E-value=7.4 Score=41.99 Aligned_cols=56 Identities=5% Similarity=-0.068 Sum_probs=36.5
Q ss_pred ceeeecCCCChhhhhhhhccc--c---cccceeEecCCChhhhhh----hhhccCCCCcccccccCC
Q psy6910 208 VNLLPGAHPSSEGKRKRNRSN--V---EAMASKSIEPDMKTNGFD----NKTVNMGNSSDYELNDNN 265 (1145)
Q Consensus 208 ~~~il~~~~~~~~~~~~~~~~--~---~~~~~ifi~pps~~~l~~----rl~~rg~~s~~~i~~~~~ 265 (1145)
.+++|+++..... .++.+.. + ..+ .+++.||+.+.+.. ||..|..++.+.|++|+.
T Consensus 108 ~vI~Ld~~~~~l~-~Rl~~R~~~~~~g~~~-~~~~~~p~~~~~~~~~~~rl~~R~dD~~e~i~~Rl~ 172 (215)
T PRK14530 108 VVLYLDVSEEELV-DRLTGRRVCPDCGANY-HVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLD 172 (215)
T ss_pred EEEEEeCCHHHHH-HHHhCCCcCcccCCcc-ccCCCCCcccccCcccCCcccCCCCCCHHHHHHHHH
Confidence 3677776653332 2222221 1 123 67788888777666 999999999999998874
No 164
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=55.93 E-value=72 Score=33.45 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=32.4
Q ss_pred ceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEEC
Q psy6910 1044 GFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEIN 1087 (1145)
Q Consensus 1044 ~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~IN 1087 (1145)
..|+.+... +..+.|..|..||+|+++| +.-|++|++|-
T Consensus 112 ~~GL~l~~e----~~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v~ 150 (183)
T PF11874_consen 112 AAGLTLMEE----GGKVIVDEVEFGSPAEKAG-IDFDWEITEVE 150 (183)
T ss_pred hCCCEEEee----CCEEEEEecCCCCHHHHcC-CCCCcEEEEEE
Confidence 368877653 3358999999999999999 99999998874
No 165
>KOG4334|consensus
Probab=55.60 E-value=10 Score=44.37 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=32.8
Q ss_pred cCCCCCCCCcEEEEccCCceEeeeCCCCceeccCCc
Q psy6910 291 LDLGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPR 326 (1145)
Q Consensus 291 ~~~~pLP~gWe~~~~~~Gr~yyidh~t~tT~W~~Pr 326 (1145)
+...|||.||.+-+-.+|-+.|+..-||.-+|.+|=
T Consensus 150 ~~~epLPeGW~~i~HnSGmPvylHr~tRVvt~SrPY 185 (650)
T KOG4334|consen 150 DKSEPLPEGWTVISHNSGMPVYLHRFTRVVTHSRPY 185 (650)
T ss_pred CCCCcCCCceEEEeecCCCceEEeeeeeeEeccCce
Confidence 445789999999999999999999999999999995
No 166
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=51.30 E-value=24 Score=40.10 Aligned_cols=119 Identities=8% Similarity=-0.038 Sum_probs=65.2
Q ss_pred cEEEEEecCCccCcccchhccccCCCCchHHHHhhhhccCcceeecccccCCCCCCCcCCccEEEeCHHHHHHHHHcCCE
Q psy6910 101 TLTLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCL 180 (1145)
Q Consensus 101 ~v~~~~~p~~~~~~~~~~~~~l~f~k~~i~~~l~~~~~~~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~~~~~f 180 (1145)
.+.+.++|++++ |+++.+.|.+.++ .+.|++.++|..++....-
T Consensus 3 ~liil~G~pGSG-------------KSTla~~L~~~~~-----------------------~~~~l~~D~~r~~~~~~~~ 46 (300)
T PHA02530 3 KIILTVGVPGSG-------------KSTWAREFAAKNP-----------------------KAVNVNRDDLRQSLFGHGE 46 (300)
T ss_pred EEEEEEcCCCCC-------------HHHHHHHHHHHCC-----------------------CCEEEeccHHHHHhcCCCc
Confidence 456677888876 8899888877630 2567777777766533210
Q ss_pred EEEEEe--C---C-cccCCCccchhhhhcCCCCceeeecCCCChhhhh----hh-hcccccccceeEecCCChhhhhhhh
Q psy6910 181 LESGLY--E---G-NHYGTPKPVKEPYVSLPQNVNLLPGAHPSSEGKR----KR-NRSNVEAMASKSIEPDMKTNGFDNK 249 (1145)
Q Consensus 181 lE~~~~--~---g-~~YGt~~~~i~~~~~~g~~~~~il~~~~~~~~~~----~~-~~~~~~~~~~ifi~pps~~~l~~rl 249 (1145)
++.+ . + ..+..-.+.+...+.+|. .+|+|.-......+ .+ ++...... .|++.+ +.+++.+|+
T Consensus 47 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~--~vIid~~~~~~~~~~~~~~la~~~~~~~~-~v~l~~-~~e~~~~R~ 120 (300)
T PHA02530 47 --WGEYKFTKEKEDLVTKAQEAAALAALKSGK--SVIISDTNLNPERRRKWKELAKELGAEFE-EKVFDV-PVEELVKRN 120 (300)
T ss_pred --ccccccChHHHHHHHHHHHHHHHHHHHcCC--eEEEeCCCCCHHHHHHHHHHHHHcCCeEE-EEEeCC-CHHHHHHHH
Confidence 1111 0 0 111122233455667765 78887444222222 11 22222343 567766 679999999
Q ss_pred hccCCC--Cccccc
Q psy6910 250 TVNMGN--SSDYEL 261 (1145)
Q Consensus 250 ~~rg~~--s~~~i~ 261 (1145)
.+|+.. ..+.|+
T Consensus 121 ~~R~~~~~~~~~i~ 134 (300)
T PHA02530 121 RKRGERAVPEDVLR 134 (300)
T ss_pred HccCcCCCCHHHHH
Confidence 999642 344555
No 167
>PRK07667 uridine kinase; Provisional
Probab=44.67 E-value=67 Score=33.97 Aligned_cols=77 Identities=6% Similarity=-0.067 Sum_probs=37.0
Q ss_pred HHHcCCEEEEEEeCCcccCCCccchhhhhcCCCCceeeecCCCChhhhhhhhcccccc-cceeEecCCChhhhhhhhhcc
Q psy6910 174 LEKSGCLLESGLYEGNHYGTPKPVKEPYVSLPQNVNLLPGAHPSSEGKRKRNRSNVEA-MASKSIEPDMKTNGFDNKTVN 252 (1145)
Q Consensus 174 ~~~~~~flE~~~~~g~~YGt~~~~i~~~~~~g~~~~~il~~~~~~~~~~~~~~~~~~~-~~~ifi~pps~~~l~~rl~~r 252 (1145)
.++.++-+.|-.|+-.. +........ +..+. ++|+|.-. .....+.+. -..|||.+|. ++..+|+..|
T Consensus 91 ~L~~~~~i~~P~~d~~~-~~~~~~~~~-~~~~~--vvIvEG~~------l~~~~~~~~~d~~v~V~~~~-~~~~~R~~~r 159 (193)
T PRK07667 91 KLQNETKLTLPFYHDET-DTCEMKKVQ-IPIVG--VIVIEGVF------LQRKEWRDFFHYMVYLDCPR-ETRFLRESEE 159 (193)
T ss_pred hhcCCCeEEEeeecccc-cccccccee-cCCCC--EEEEEehh------hhhhhHHhhceEEEEEECCH-HHHHHHHhcc
Confidence 45666667776664332 221111111 12323 77777322 122222111 1168999886 5666666666
Q ss_pred CCCCccccc
Q psy6910 253 MGNSSDYEL 261 (1145)
Q Consensus 253 g~~s~~~i~ 261 (1145)
...+.+..+
T Consensus 160 ~~~~~~~~~ 168 (193)
T PRK07667 160 TQKNLSKFK 168 (193)
T ss_pred cHhHHHHHH
Confidence 544444444
No 168
>PRK06761 hypothetical protein; Provisional
Probab=39.98 E-value=47 Score=37.48 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=69.7
Q ss_pred CcEEEEEecCCccCcccchhccccCCCCchHHHHhhhhccCcceeeccccc--CCCCCCCcCCccEEEeCHHHHHHHHHc
Q psy6910 100 KTLTLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRDNLYLRTVPVTT--RTPRDGELNGVDYTFLSIEEFKQLEKS 177 (1145)
Q Consensus 100 ~~v~~~~~p~~~~~~~~~~~~~l~f~k~~i~~~l~~~~~~~~~~~~v~~TT--R~~r~~E~~g~~Y~fvs~~~f~~~~~~ 177 (1145)
+.+.+...|++.+ |+|+++.|.+.+... .. .+.+++ ..+++.|..+..| .+.++|..+++.
T Consensus 3 ~~lIvI~G~~GsG-------------KTTla~~L~~~L~~~-g~-~v~~~~~~~~~~p~d~~~~~~--~~~eer~~~l~~ 65 (282)
T PRK06761 3 TKLIIIEGLPGFG-------------KSTTAKMLNDILSQN-GI-EVELYLEGNLDHPADYDGVAC--FTKEEFDRLLSN 65 (282)
T ss_pred CcEEEEECCCCCC-------------HHHHHHHHHHhcCcC-ce-EEEEEecCCCCCchhhccccC--CCHHHHHHHHHh
Confidence 4577777887775 889999888876322 22 333322 2346677888655 499999999876
Q ss_pred CCEEEEEEeCCcccCCCccchhhhhcCCCCceeeecCCCChhhhhhhhcccc-----cccceeEecCCChhhhhhhhhcc
Q psy6910 178 GCLLESGLYEGNHYGTPKPVKEPYVSLPQNVNLLPGAHPSSEGKRKRNRSNV-----EAMASKSIEPDMKTNGFDNKTVN 252 (1145)
Q Consensus 178 ~~flE~~~~~g~~YGt~~~~i~~~~~~g~~~~~il~~~~~~~~~~~~~~~~~-----~~~~~ifi~pps~~~l~~rl~~r 252 (1145)
...+- +.-++..+..|. .+|+-..-.... -+..+. ... +.|+-..+.|.+++|+..|
T Consensus 66 ~~~f~------------~~l~~~~~~~g~--~~i~~~~~l~~~---yr~~~~~~~~~~~~-v~~~h~~p~e~i~~R~~~r 127 (282)
T PRK06761 66 YPDFK------------EVLLKNVLKKGD--YYLLPYRKIKNE---FGDQFSDELFNDIS-KNDIYELPFDKNTELITDR 127 (282)
T ss_pred hhHHH------------HHHHHHHHHcCC--eEEEEehhhhHH---Hhhhhhhhhcccce-eeeeecCCHHHHHHHHHHH
Confidence 65432 344555556643 544432211111 111111 112 3344477778999999877
Q ss_pred CC
Q psy6910 253 MG 254 (1145)
Q Consensus 253 g~ 254 (1145)
..
T Consensus 128 w~ 129 (282)
T PRK06761 128 WN 129 (282)
T ss_pred HH
Confidence 53
No 169
>KOG2921|consensus
Probab=39.12 E-value=45 Score=38.51 Aligned_cols=46 Identities=22% Similarity=0.344 Sum_probs=35.8
Q ss_pred cccEEEEEEcCCChhccc-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHc
Q psy6910 1057 NMALFVLQIAENGPAALD-GHLKVGDEIVEINGINTKNMTHAEAIEIIRN 1105 (1145)
Q Consensus 1057 ~~~v~V~~V~~gg~A~~~-G~L~~GD~Il~ING~~v~~~s~~eav~~lk~ 1105 (1145)
..++.|..|...||+.-- | |.+||+|.++||.+|. +.++..+.++.
T Consensus 219 g~gV~Vtev~~~Spl~gprG-L~vgdvitsldgcpV~--~v~dW~ecl~t 265 (484)
T KOG2921|consen 219 GEGVTVTEVPSVSPLFGPRG-LSVGDVITSLDGCPVH--KVSDWLECLAT 265 (484)
T ss_pred CceEEEEeccccCCCcCccc-CCccceEEecCCcccC--CHHHHHHHHHh
Confidence 346677778878877643 6 9999999999999998 55677776665
No 170
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=38.79 E-value=76 Score=37.25 Aligned_cols=55 Identities=36% Similarity=0.433 Sum_probs=41.0
Q ss_pred EEEEeCCCChhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhccCCC--eEEEEEee
Q psy6910 847 SIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYG--RVTLGIRR 904 (1145)
Q Consensus 847 ~V~~V~pgs~A~~~G~L~~GD~IlsVNG~~v~~~s~~~~~~~L~~~~~~~--~v~L~v~r 904 (1145)
++..+..+++|..+| ++.||+++++|+..+. ++.++...+....... .+.+.+.|
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVA--SWDDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEcc--CHHHHHHHHHhccCCcccceEEEEEe
Confidence 555899999999999 9999999999999999 5666655555433212 25566666
No 171
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=38.77 E-value=9.8 Score=39.90 Aligned_cols=115 Identities=16% Similarity=0.107 Sum_probs=57.8
Q ss_pred CCchHHHHhhhhccCcceeecccccCCCCCCCcCCccEEEeCHHHHHHHHHcCC------EEEEEEeCCcccCCCccchh
Q psy6910 126 KGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGC------LLESGLYEGNHYGTPKPVKE 199 (1145)
Q Consensus 126 k~~i~~~l~~~~~~~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~~~~~------flE~~~~~g~~YGt~~~~i~ 199 (1145)
|+|+++.|.+.+...-+ .+ ++++.|+..+. .+.+........ +.++..|..+.|....+.+.
T Consensus 13 KtT~~~~L~~~l~~~g~--~v-~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 80 (200)
T cd01672 13 KTTLIELLAERLEARGY--EV-VLTREPGGTPI---------GEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIK 80 (200)
T ss_pred HHHHHHHHHHHHHHcCC--eE-EEEeCCCCCch---------HHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88999988887642222 23 56676664421 234444433321 11222223344555555566
Q ss_pred hhhcCCCCceeeecCCCChh-------------hhhh---hhcccccccceeEecCCChhhhhhhhhccCCC
Q psy6910 200 PYVSLPQNVNLLPGAHPSSE-------------GKRK---RNRSNVEAMASKSIEPDMKTNGFDNKTVNMGN 255 (1145)
Q Consensus 200 ~~~~~g~~~~~il~~~~~~~-------------~~~~---~~~~~~~~~~~ifi~pps~~~l~~rl~~rg~~ 255 (1145)
.....|+ .+|+|=-+... .... .....+.+..+||+..|. +++.+|+..|+..
T Consensus 81 ~~~~~~~--~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~-~~~~~R~~~R~~~ 149 (200)
T cd01672 81 PALARGK--IVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDP-EVGLARIEARGRD 149 (200)
T ss_pred HHHhCCC--EEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCH-HHHHHHHHhcCCc
Confidence 6666755 78877111100 0011 111111222156666665 8899999999853
No 172
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=38.66 E-value=48 Score=35.34 Aligned_cols=57 Identities=5% Similarity=-0.177 Sum_probs=37.8
Q ss_pred cchhhhhcCCCCceeeecCCCChhhhhhhhcccccccceeEecCCChhhhhhhhhccCCCC
Q psy6910 196 PVKEPYVSLPQNVNLLPGAHPSSEGKRKRNRSNVEAMASKSIEPDMKTNGFDNKTVNMGNS 256 (1145)
Q Consensus 196 ~~i~~~~~~g~~~~~il~~~~~~~~~~~~~~~~~~~~~~ifi~pps~~~l~~rl~~rg~~s 256 (1145)
.-++..+.+|. .+|+|.-......+... ...... ++|+..++.+++++|+..|+.+.
T Consensus 88 ~va~~~l~~G~--sVIvEgv~l~p~~~~~~-~~~~v~-~i~l~v~d~e~lr~Rl~~R~~~~ 144 (197)
T PRK12339 88 RVIRRALLNGE--DLVIESLYFHPPMIDEN-RTNNIR-AFYLYIRDAELHRSRLADRINYT 144 (197)
T ss_pred HHHHHHHHcCC--CEEEEecCcCHHHHHHH-HhcCeE-EEEEEeCCHHHHHHHHHHHhhcc
Confidence 44667888866 89998544444443321 123344 67888888899999999998643
No 173
>PRK06762 hypothetical protein; Provisional
Probab=38.40 E-value=66 Score=32.78 Aligned_cols=51 Identities=4% Similarity=-0.106 Sum_probs=29.2
Q ss_pred hhhcCCCCceeeecCCCChh----hhhhhhcccc-cccceeEecCCChhhhhhhhhccCC
Q psy6910 200 PYVSLPQNVNLLPGAHPSSE----GKRKRNRSNV-EAMASKSIEPDMKTNGFDNKTVNMG 254 (1145)
Q Consensus 200 ~~~~~g~~~~~il~~~~~~~----~~~~~~~~~~-~~~~~ifi~pps~~~l~~rl~~rg~ 254 (1145)
..++.|. .+|+|.-.... ..+.+.+.+. ... .||+.+|- ++..+|+..|+.
T Consensus 63 ~~~~~g~--~vild~~~~~~~~~~~~~~l~~~~~~~~~-~v~Ldap~-e~~~~R~~~R~~ 118 (166)
T PRK06762 63 YGLGHCE--FVILEGILNSDRYGPMLKELIHLFRGNAY-TYYFDLSF-EETLRRHSTRPK 118 (166)
T ss_pred HHHhCCC--EEEEchhhccHhHHHHHHHHHHhcCCCeE-EEEEeCCH-HHHHHHHhcccc
Confidence 4456655 88876432111 1333333333 234 77888774 788888888864
No 174
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=38.25 E-value=32 Score=30.72 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=18.9
Q ss_pred CCCCCCCcEEEEc--------cCCceEeeeCCCC
Q psy6910 293 LGPLPPRWEKAYT--------EKGEVYFIDHNSS 318 (1145)
Q Consensus 293 ~~pLP~gWe~~~~--------~~Gr~yyidh~t~ 318 (1145)
.-|||.||+..+- ..+.+||+...-+
T Consensus 5 ~~Plp~GW~R~~~~r~~g~~~~~~dV~Y~sP~Gk 38 (77)
T smart00391 5 RLPLPCGWRRETKQRKSGRSAGKFDVYYISPCGK 38 (77)
T ss_pred cCCCCCCcEEEEEEecCCCCCCcccEEEECCCCC
Confidence 4579999987764 2588999975444
No 175
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=34.80 E-value=40 Score=28.64 Aligned_cols=25 Identities=36% Similarity=0.925 Sum_probs=18.3
Q ss_pred CCCCCCcEEEEc-------cCCceEeeeCCCC
Q psy6910 294 GPLPPRWEKAYT-------EKGEVYFIDHNSS 318 (1145)
Q Consensus 294 ~pLP~gWe~~~~-------~~Gr~yyidh~t~ 318 (1145)
-|||.||+...- ..+.+||+....+
T Consensus 4 ~P~p~GW~R~~~~r~~g~~~k~dv~Y~sP~Gk 35 (62)
T cd00122 4 DPLPPGWKRELVIRKSGSAGKGDVYYYSPCGK 35 (62)
T ss_pred CCCCCCeEEEEEEcCCCCCCcceEEEECCCCc
Confidence 478999977764 2467999976653
No 176
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=31.90 E-value=46 Score=29.73 Aligned_cols=24 Identities=33% Similarity=0.778 Sum_probs=16.9
Q ss_pred CCCCCcEEEEc-------cCCceEeeeCCCC
Q psy6910 295 PLPPRWEKAYT-------EKGEVYFIDHNSS 318 (1145)
Q Consensus 295 pLP~gWe~~~~-------~~Gr~yyidh~t~ 318 (1145)
.||+||+..+- ....+||+....+
T Consensus 6 ~lp~GW~r~~~~R~~gs~~k~DvyY~sP~Gk 36 (77)
T cd01396 6 RLPPGWKRELVPRKSGSAGKFDVYYISPTGK 36 (77)
T ss_pred CCCCCCEEEEEEecCCCCCcceEEEECCCCC
Confidence 39999977653 2356999987654
No 177
>KOG4334|consensus
Probab=31.56 E-value=41 Score=39.70 Aligned_cols=36 Identities=19% Similarity=0.422 Sum_probs=32.3
Q ss_pred CCCCCCCceeeeCCCCceEEEeCCCceeeCcCCccc
Q psy6910 339 DDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQ 374 (1145)
Q Consensus 339 ~~~LP~gWe~~~~~~g~~yyinh~~k~t~~~~P~~~ 374 (1145)
..+||.||...+...|-+.|+...|+..+|..|-+-
T Consensus 152 ~epLPeGW~~i~HnSGmPvylHr~tRVvt~SrPYfl 187 (650)
T KOG4334|consen 152 SEPLPEGWTVISHNSGMPVYLHRFTRVVTHSRPYFL 187 (650)
T ss_pred CCcCCCceEEEeecCCCceEEeeeeeeEeccCceee
Confidence 458999999999999999999999999999999764
No 178
>KOG1712|consensus
Probab=29.20 E-value=1.7e+02 Score=29.85 Aligned_cols=60 Identities=25% Similarity=0.415 Sum_probs=47.3
Q ss_pred CCCCcCccceEEEEEEecccceeEEEecCCCCCCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy6910 427 LNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506 (1145)
Q Consensus 427 ~~p~~~~g~~~~v~l~k~~~glG~~i~gg~~~~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l 506 (1145)
+.|.+|+|+.+.+.-++.. |.|. +-+ +.|.|++||+++-||+.-.+|=|..-|.+++
T Consensus 89 RK~gKLPG~~i~~~Y~lEY---------g~d~----~Em----------q~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll 145 (183)
T KOG1712|consen 89 RKPGKLPGEVISESYELEY---------GEDR----FEM----------QKGAIKPGQRVVVVDDLLATGGTLAAATELL 145 (183)
T ss_pred ccCCCCCCceeEEEEeeec---------Cccc----eee----------eccccCCCCeEEEEechhhcCccHHHHHHHH
Confidence 6788999999988877654 2232 111 2355899999999999999999999999999
Q ss_pred hcC
Q psy6910 507 QSI 509 (1145)
Q Consensus 507 ~~~ 509 (1145)
..+
T Consensus 146 ~r~ 148 (183)
T KOG1712|consen 146 ERV 148 (183)
T ss_pred HHh
Confidence 994
No 179
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=29.13 E-value=25 Score=39.28 Aligned_cols=32 Identities=19% Similarity=0.102 Sum_probs=28.5
Q ss_pred ccCCCCCCcEEEeeCCEEecCCCHHHHHHHHHhh
Q psy6910 62 AEKYLEEKAIILEIQGQKVAGYTRRDTIAWLNHC 95 (1145)
Q Consensus 62 ~sg~l~~GD~i~evng~~v~g~~~~~~~~~l~~~ 95 (1145)
-.|.|++||++|.|-|.|-. |++||+.+=-+.
T Consensus 100 Lfg~LRpgDell~i~G~PYD--TLeevIG~rg~~ 131 (416)
T COG4100 100 LFGILRPGDELLYITGSPYD--TLEEVIGLRGEG 131 (416)
T ss_pred HHhccCCCCeEEEecCCcch--hHHHHhccCCCC
Confidence 45899999999999999998 999999887666
No 180
>KOG1945|consensus
Probab=28.71 E-value=23 Score=40.36 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=67.3
Q ss_pred ceEEEEEEecccceeEEEecCCCC-----CCccEEEEEeccCCcccccCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcC
Q psy6910 435 ERIHSSLVKSLRGLGFTIVGGDDS-----KEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSI 509 (1145)
Q Consensus 435 ~~~~v~l~k~~~glG~~i~gg~~~-----~~~~i~V~~v~~~g~A~~~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~ 509 (1145)
..+.+.+.++..|+|++++|-... ....++++++.+++.-+++|+..+-|++..+.+..+.++......+.++..
T Consensus 99 ~~~e~av~~~~~g~g~~~~~~~~gkk~~~~e~~~~~~sa~sg~~~~r~g~~sved~~~s~~~k~lp~vp~s~~~es~g~S 178 (377)
T KOG1945|consen 99 DLFEVAVEKGAEGLGVSIIGMGVGKKSGLEELGIFVKSATSGGAVHRDGRWSVEDVEVSVDSKSLPGVPFSWFAESLGGS 178 (377)
T ss_pred chhhhhccCCcCCCCccccccccchhccchhhcceeecccccccccccccccccccccccccCCCCCcchhhhhcccccc
Confidence 345678888889999998882221 134699999999999999999999999999999999999999999999873
Q ss_pred CCCCeEEEEEE
Q psy6910 510 SPGETVQLEVC 520 (1145)
Q Consensus 510 ~~g~~v~l~v~ 520 (1145)
-..+.++..
T Consensus 179 --~~~~n~~s~ 187 (377)
T KOG1945|consen 179 --SSRVNFTSP 187 (377)
T ss_pred --hhccCCccc
Confidence 334444443
No 181
>KOG3354|consensus
Probab=25.58 E-value=2.2e+02 Score=29.15 Aligned_cols=20 Identities=5% Similarity=-0.174 Sum_probs=16.9
Q ss_pred eeEecCCChhhhhhhhhccCC
Q psy6910 234 SKSIEPDMKTNGFDNKTVNMG 254 (1145)
Q Consensus 234 ~ifi~pps~~~l~~rl~~rg~ 254 (1145)
+||+.. |+|++..||.+|..
T Consensus 121 fi~l~~-s~evi~~Rl~~R~g 140 (191)
T KOG3354|consen 121 FILLSA-SFEVILKRLKKRKG 140 (191)
T ss_pred Eeeeec-cHHHHHHHHhhccc
Confidence 677777 89999999999854
No 182
>KOG1703|consensus
Probab=25.47 E-value=37 Score=41.48 Aligned_cols=76 Identities=34% Similarity=0.543 Sum_probs=63.4
Q ss_pred ceeEEEEccCCcccccEEEEEEcCCChhcccCCCCCCCEEEEECCEEcCCCCHHHHHHHHHcCCCeEEEEEEeCCCcCC
Q psy6910 1044 GFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSVVA 1122 (1145)
Q Consensus 1044 ~lG~sl~gg~~~~~~~v~V~~V~~gg~A~~~G~L~~GD~Il~ING~~v~~~s~~eav~~lk~~~~~v~L~v~R~~~~~~ 1122 (1145)
.|||.+.++ +. ..++-|.++.+++.++.+. +.++|.|..++|..-..+.+.++..-++..+....+.+.|....++
T Consensus 9 ~~~~r~~~~-~~-~~~l~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 84 (479)
T KOG1703|consen 9 PWGFRLQGG-DF-LQPLRILRVTPGGKAADAE-LDPGDIIAAIDGENEETMTHLEAQNKIKGSGSQLALTLSRSETSSP 84 (479)
T ss_pred Cceeeeccc-cc-ccccceeccCCCCcccccc-ccccccccccccccccccccccccCccccccccccccccccccccc
Confidence 566665554 33 5678899999999999998 9999999999999999999999999999888888998888644433
No 183
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=24.29 E-value=75 Score=35.00 Aligned_cols=102 Identities=9% Similarity=0.060 Sum_probs=52.5
Q ss_pred CCchHHHHhhhhccCcceeecccccCCCCCCCcCCccEEEeCHHHHHHHHHcCCEEEEEEeCCcccCCCccchhhhhcCC
Q psy6910 126 KGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGLYEGNHYGTPKPVKEPYVSLP 205 (1145)
Q Consensus 126 k~~i~~~l~~~~~~~~~~~~v~~TTR~~r~~E~~g~~Y~fvs~~~f~~~~~~~~flE~~~~~g~~YGt~~~~i~~~~~~g 205 (1145)
|+++.+.|.+.+.. .|.++++++.+.+...... +-+ .+.......-...++..++.|
T Consensus 12 KST~a~~La~~l~~-------------------~~~~v~~i~~D~lr~~~~~--~~~--~~e~~~~~~~~~~i~~~l~~~ 68 (249)
T TIGR03574 12 KSTFSKELAKKLSE-------------------KNIDVIILGTDLIRESFPV--WKE--KYEEFIRDSTLYLIKTALKNK 68 (249)
T ss_pred HHHHHHHHHHHHHH-------------------cCCceEEEccHHHHHHhHH--hhH--HhHHHHHHHHHHHHHHHHhCC
Confidence 88888888776410 1345566665555443210 000 011111222234577777775
Q ss_pred CCceeeecCCCChhhhh-hh----hcccccccceeEecCCChhhhhhhhhccCC
Q psy6910 206 QNVNLLPGAHPSSEGKR-KR----NRSNVEAMASKSIEPDMKTNGFDNKTVNMG 254 (1145)
Q Consensus 206 ~~~~~il~~~~~~~~~~-~~----~~~~~~~~~~ifi~pps~~~l~~rl~~rg~ 254 (1145)
. .+|+|--....+.+ .+ +......+ .||+.+|. +++.+|...|+.
T Consensus 69 ~--~VI~D~~~~~~~~r~~l~~~ak~~~~~~~-~I~l~~p~-e~~~~Rn~~R~~ 118 (249)
T TIGR03574 69 Y--SVIVDDTNYYNSMRRDLINIAKEYNKNYI-IIYLKAPL-DTLLRRNIERGE 118 (249)
T ss_pred C--eEEEeccchHHHHHHHHHHHHHhCCCCEE-EEEecCCH-HHHHHHHHhCCC
Confidence 5 88888432111111 11 12222334 67777664 888899888875
No 184
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=23.47 E-value=1.2e+02 Score=32.16 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=32.9
Q ss_pred cCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCeEE
Q psy6910 477 EGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQ 516 (1145)
Q Consensus 477 ~g~l~~GD~il~vNg~~~~~~~~~~~~~~l~~~~~g~~v~ 516 (1145)
.|.+.+||+++-|+++-..|-|-.++++++++ .|..|.
T Consensus 116 ~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~--~Ga~V~ 153 (187)
T PRK13810 116 VGDLKPEDRIVMLEDVTTSGGSVREAIEVVRE--AGAYIK 153 (187)
T ss_pred EccCCCcCEEEEEEeccCCChHHHHHHHHHHH--CCCEEE
Confidence 36688999999999999999999999999999 454443
No 185
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=22.28 E-value=74 Score=28.35 Aligned_cols=24 Identities=29% Similarity=0.638 Sum_probs=16.2
Q ss_pred CCCCCCCCcEEEEc--c------CCceEeeeC
Q psy6910 292 DLGPLPPRWEKAYT--E------KGEVYFIDH 315 (1145)
Q Consensus 292 ~~~pLP~gWe~~~~--~------~Gr~yyidh 315 (1145)
...+||.||....- . ...+||+..
T Consensus 7 ~~~~Lp~GW~re~~~R~~g~~~~~~dv~Y~sP 38 (77)
T PF01429_consen 7 LDPPLPDGWKREVVVRKSGSSAGKKDVYYYSP 38 (77)
T ss_dssp EBTTSTTT-EEEEEESSSSTTTTSEEEEEEET
T ss_pred ccCCCCCCCEEEEEEecCCCcCCceEEEEECC
Confidence 35689999976654 2 256889886
No 186
>KOG2921|consensus
Probab=21.52 E-value=1.4e+02 Score=34.86 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=35.9
Q ss_pred CCceEEEEeCCCChhhhcCCCCCCCEEEEECCEecCCCCHHHHHHHHHhc
Q psy6910 843 GSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKA 892 (1145)
Q Consensus 843 ~~~i~V~~V~pgs~A~~~G~L~~GD~IlsVNG~~v~~~s~~~~~~~L~~~ 892 (1145)
+.++.|..|...||+.----|.+||.|.++||.+|. +.++..+.++.+
T Consensus 219 g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~--~v~dW~ecl~ts 266 (484)
T KOG2921|consen 219 GEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVH--KVSDWLECLATS 266 (484)
T ss_pred CceEEEEeccccCCCcCcccCCccceEEecCCcccC--CHHHHHHHHHhh
Confidence 456777788777777543339999999999999999 556666666653
No 187
>PRK04040 adenylate kinase; Provisional
Probab=20.89 E-value=60 Score=34.30 Aligned_cols=39 Identities=3% Similarity=-0.215 Sum_probs=26.4
Q ss_pred hhcccccccceeEecCCChhhhhhhhhc----cCCCCcccccccC
Q psy6910 224 RNRSNVEAMASKSIEPDMKTNGFDNKTV----NMGNSSDYELNDN 264 (1145)
Q Consensus 224 ~~~~~~~~~~~ifi~pps~~~l~~rl~~----rg~~s~~~i~~~~ 264 (1145)
+++..|+.+ .+|..+|+ +++++|++. |+.++.+.|+.|.
T Consensus 106 ~~~l~pd~i-i~l~a~p~-~i~~Rrl~d~~R~R~~es~e~I~~~~ 148 (188)
T PRK04040 106 LEELNPDVI-VLIEADPD-EILMRRLRDETRRRDVETEEDIEEHQ 148 (188)
T ss_pred HhhcCCCEE-EEEeCCHH-HHHHHHhcccccCCCCCCHHHHHHHH
Confidence 344456665 55555555 999999964 7778888888554
Done!