RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6910
(1145 letters)
>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2. Also
called DHR (Dlg homologous region) or GLGF (relatively
well conserved tetrapeptide in these domains). Some PDZs
have been shown to bind C-terminal polypeptides; others
appear to bind internal (non-C-terminal) polypeptides.
Different PDZs possess different binding specificities.
Length = 85
Score = 93.6 bits (233), Expect = 6e-23
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+EL +G G GFS+ GG++ + + V + PAA G L+VGD I+E+NG + + +T
Sbjct: 5 VELEKGGGGLGFSLVGGKD-EGGGVVVSSVVPGSPAAKAG-LRVGDVILEVNGTSVEGLT 62
Query: 1096 HAEAIEIIRNGDSTVRLLIKRGG 1118
H EA+++++ V L + RGG
Sbjct: 63 HLEAVDLLKKAGGKVTLTVLRGG 85
Score = 75.5 bits (186), Expect = 1e-16
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSS 881
++ L + G GF +VGG +EG V + +VPG A G L GD I+ V+ SV +
Sbjct: 4 LVELEKGGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAG-LRVGDVILEVNGTSVEGLT 62
Query: 882 HHHVVELMGKASVYGRVTLGIRRK 905
H V+L+ KA G+VTL + R
Sbjct: 63 HLEAVDLLKKAG--GKVTLTVLRG 84
Score = 72.4 bits (178), Expect = 1e-15
Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 435 ERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCV 494
E L K GLGF++VGG D + + + SVVP PAA G L+ GDV++ VN V
Sbjct: 1 EPRLVELEKGGGGLGFSLVGGKD-EGGGVVVSSVVPGSPAAKAG-LRVGDVILEVNGTSV 58
Query: 495 LGYTHHDMVSVFQSISPGETVQLEVCRG 522
G TH + V + + G V L V RG
Sbjct: 59 EGLTHLEAVDLLK--KAGGKVTLTVLRG 84
Score = 66.2 bits (162), Expect = 2e-13
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 920 PYDVTITRRENEGFGFVIIS-SLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIM 978
P V + + G GF ++ G + ++ SPA ++G L +GD IL VN +
Sbjct: 2 PRLVEL-EKGGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAG-LRVGDVILEVNGTSVE 59
Query: 979 SLHHGEIVNLIKDSGYCVTLTI 1000
L H E V+L+K +G VTLT+
Sbjct: 60 GLTHLEAVDLLKKAGGKVTLTV 81
Score = 51.2 bits (123), Expect = 5e-08
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 603 IVKGAMGFGFTIA---DSSHGQKVKKILDR---QRCKNLAEGDILIEINNLNVRNMCHGE 656
+ KG G GF++ D G V ++ + L GD+++E+N +V + H E
Sbjct: 7 LEKGGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKA-GLRVGDVILEVNGTSVEGLTHLE 65
Query: 657 VVQVLKDCQRNLEANIIVQR 676
V +LK + + V R
Sbjct: 66 AVDLLKKAGGKVT--LTVLR 83
>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan
signaling molecules, often in tandem arrangements. May be
responsible for specific protein-protein interactions, as
most PDZ domains bind C-terminal polypeptides, and
binding to internal (non-C-terminal) polypeptides and
even to lipids has been demonstrated. In this subfamily
of PDZ domains an N-terminal beta-strand forms the
peptide-binding groove base, a circular permutation with
respect to PDZ domains found in proteases.
Length = 82
Score = 90.7 bits (226), Expect = 6e-22
Identities = 30/81 (37%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 1036 IELSRGT-RGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNM 1094
+ L + G GFS+RGG++ +FV ++ GPA G L+VGD I+E+NG++ + +
Sbjct: 4 VTLRKDPGGGLGFSLRGGKD-SGGGIFVSRVEPGGPAER-GGLRVGDRILEVNGVSVEGL 61
Query: 1095 THAEAIEIIRNGDSTVRLLIK 1115
TH EA+E+++N V L ++
Sbjct: 62 THEEAVELLKNSGDEVTLTVR 82
Score = 79.1 bits (196), Expect = 5e-18
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGS-TIGRIIEDSPADRSGELHLGDHILAVNHVDIM 978
VT+ + G GF + + G + R+ PA+R G L +GD IL VN V +
Sbjct: 1 VRTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVE 59
Query: 979 SLHHGEIVNLIKDSGYCVTLTI 1000
L H E V L+K+SG VTLT+
Sbjct: 60 GLTHEEAVELLKNSGDEVTLTV 81
Score = 74.9 bits (185), Expect = 2e-16
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 820 VMVITLLR-QENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVL 878
V +TL + G GF + GG + G + + + PGG A+ G L GD I+ V+ +SV
Sbjct: 1 VRTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAER-GGLRVGDRILEVNGVSVE 59
Query: 879 NSSHHHVVELMGKASVYGRVTLGIR 903
+H VEL+ + VTL +R
Sbjct: 60 GLTHEEAVELLKNSG--DEVTLTVR 82
Score = 69.5 bits (171), Expect = 1e-14
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 446 RGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
GLGF++ GG DS + + V P GPA G L+ GD ++ VN V G TH + V +
Sbjct: 12 GGLGFSLRGGKDSGG-GIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVEL 69
Query: 506 FQSISPGETVQLEVC 520
++ G+ V L V
Sbjct: 70 LKNS--GDEVTLTVR 82
Score = 52.2 bits (126), Expect = 2e-08
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 609 GFGFTI---ADSSHGQKVKKILDRQRC--KNLAEGDILIEINNLNVRNMCHGEVVQVLKD 663
G GF++ DS G V ++ L GD ++E+N ++V + H E V++LK+
Sbjct: 13 GLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKN 72
Query: 664 CQRNLEANIIVQ 675
+ + V+
Sbjct: 73 SGDEVT--LTVR 82
Score = 38.7 bits (91), Expect = 0.001
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKY-LEEKAIILEIQGQKVAGY 83
VTL P G L FS+ GG DSG +V+ + AE+ L ILE+ G V G
Sbjct: 4 VTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGP--AERGGLRVGDRILEVNGVSVEGL 61
Query: 84 TRRDTIAWLNHCCRSGKTLTL 104
T + + L SG +TL
Sbjct: 62 THEEAVELLK---NSGDEVTL 79
>gnl|CDD|214504 smart00072, GuKc, Guanylate kinase homologues. Active enzymes
catalyze ATP-dependent phosphorylation of GMP to GDP.
Structure resembles that of adenylate kinase. So-called
membrane-associated guanylate kinase homologues (MAGUKs)
do not possess guanylate kinase activities; instead at
least some possess protein-binding functions.
Length = 174
Score = 86.6 bits (215), Expect = 2e-19
Identities = 38/71 (53%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 126 KGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGL 185
KG++ +L I D + R V TTR PR GE+NGVDY F+S EEF+ KSG LE G
Sbjct: 5 KGTLLAELIQEIPD-AFERVVSHTTRPPRPGEVNGVDYHFVSKEEFEDDIKSGLFLEWGE 63
Query: 186 YEGNHYGTPKP 196
YEGN+YGT K
Sbjct: 64 YEGNYYGTSKE 74
>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP kinase.
This enzyme transfers a phosphate from ATP to GMP,
yielding ADP and GDP [Purines, pyrimidines, nucleosides,
and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 179
Score = 78.3 bits (194), Expect = 1e-16
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 126 KGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGL 185
K ++ L NL ++ TTR PR GE++GVDY F+S EEF+++ K+G LE
Sbjct: 13 KSTLVKALLEED-PNLKF-SISATTRKPRPGEVDGVDYFFVSKEEFEEMIKAGEFLEWAE 70
Query: 186 YEGNHYGTPK-PVKE 199
GN+YGTPK PV+E
Sbjct: 71 VHGNYYGTPKSPVEE 85
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 78.2 bits (194), Expect = 3e-16
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 126 KGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGL 185
K ++ L NL L +V TTR PR GE++GVDY F+S EEF+++ ++G LE
Sbjct: 18 KSTLVKALLER-DPNLQL-SVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAE 75
Query: 186 YEGNHYGTPK-PVKE 199
GN+YGTP+ PV+E
Sbjct: 76 VFGNYYGTPRSPVEE 90
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 78.0 bits (193), Expect = 3e-16
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 126 KGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGL 185
K ++ L D L +V TTR PR GE++GVDY F++ EEF++L + LE
Sbjct: 17 KSTLVKALLE--DDKLRF-SVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAE 73
Query: 186 YEGNHYGTPKP 196
Y GN+YGT +
Sbjct: 74 YHGNYYGTSRE 84
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 71.0 bits (175), Expect = 2e-14
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 126 KGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGL 185
K ++ L N +V TTR PR GE++GVDY F+S EEF++L ++G LE
Sbjct: 12 KSTLLKRLLEEFDPNFGF-SVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAE 70
Query: 186 YEGNHYGTPK 195
+ GN+YGT K
Sbjct: 71 FHGNYYGTSK 80
>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF). PDZ domains
are found in diverse signaling proteins.
Length = 80
Score = 67.6 bits (166), Expect = 7e-14
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 1036 IELSRGTRG-FGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNM 1094
+ L + RG GFS+ GG + + +FV ++ G A G L+ GD I+ ING + +N+
Sbjct: 2 VTLEKSGRGGLGFSLVGGSD-GDPGIFVSEVLPGGAAEAGG-LQEGDRILSINGQDLENL 59
Query: 1095 THAEAIEIIRNGDSTVRLLIK 1115
+H EA+ ++ V L I
Sbjct: 60 SHDEAVLALKGSGGEVTLTIL 80
Score = 56.5 bits (137), Expect = 5e-10
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 922 DVTITRRENEGFGFVI-ISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSL 980
+VT+ + G GF + S G + ++ A+ G L GD IL++N D+ +L
Sbjct: 1 EVTLEKSGRGGLGFSLVGGSDGDPGIFVSEVLPGGAAEAGG-LQEGDRILSINGQDLENL 59
Query: 981 HHGEIVNLIKDSGYCVTLTI 1000
H E V +K SG VTLTI
Sbjct: 60 SHDEAVLALKGSGGEVTLTI 79
Score = 54.6 bits (132), Expect = 3e-09
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 823 ITLLRQENG-FGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSS 881
+TL + G GF +VGG++ + + ++PGGAA+ G L GD I+S++ + N S
Sbjct: 2 VTLEKSGRGGLGFSLVGGSDGDPGIFVSEVLPGGAAEAGG-LQEGDRILSINGQDLENLS 60
Query: 882 HHHVVELMGKASVYGRVTLGIR 903
H V + + G VTL I
Sbjct: 61 HDEAVLALKGSG--GEVTLTIL 80
Score = 44.2 bits (105), Expect = 1e-05
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
GLGF++VGG D + + V+P G A G LQ GD ++ +N + + +H + V
Sbjct: 11 GLGFSLVGGSDGDPG-IFVSEVLPGGAAEAGG-LQEGDRILSINGQDLENLSHDEAVLAL 68
Query: 507 QSISPGETVQLEV 519
+ G V L +
Sbjct: 69 K--GSGGEVTLTI 79
Score = 41.8 bits (99), Expect = 9e-05
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 609 GFGFTIADSSHGQK---VKKIL-----DRQRCKNLAEGDILIEINNLNVRNMCHGEVVQV 660
G GF++ S G V ++L + L EGD ++ IN ++ N+ H E V
Sbjct: 11 GLGFSLVGGSDGDPGIFVSEVLPGGAAEAG---GLQEGDRILSINGQDLENLSHDEAVLA 67
Query: 661 LKDC 664
LK
Sbjct: 68 LKGS 71
Score = 33.4 bits (77), Expect = 0.090
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKE---KVKGAEKYLEEKAIILEIQGQKVA 81
VTL G L FS+ GGSD +V+ + + G L+E IL I GQ +
Sbjct: 2 VTLEKSGRGGLGFSLVGGSDGDPGIFVSEVLPGGAAEAGG----LQEGDRILSINGQDLE 57
Query: 82 G 82
Sbjct: 58 N 58
>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or
GLGF (after a conserved sequence motif). Many PDZ domains
bind C-terminal polypeptides, though binding to internal
(non-C-terminal) polypeptides and even to lipids has been
demonstrated. Heterodimerization through PDZ-PDZ domain
interactions adds to the domain's versatility, and PDZ
domain-mediated interactions may be modulated dynamically
through target phosphorylation. Some PDZ domains play a
role in scaffolding supramolecular complexes. PDZ domains
are found in diverse signaling proteins in bacteria,
archebacteria, and eurkayotes. This CD contains two
distinct structural subgroups with either a N- or
C-terminal beta-strand forming the peptide-binding groove
base. The circular permutation placing the strand on the
N-terminus appears to be found in Eumetazoa only, while
the C-terminal variant is found in all three kingdoms of
life, and seems to co-occur with protease domains. PDZ
domains have been named after PSD95(post synaptic density
protein), DlgA (Drosophila disc large tumor suppressor),
and ZO1, a mammalian tight junction protein.
Length = 70
Score = 62.3 bits (152), Expect = 4e-12
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 1043 RGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEI 1102
G GFSIRGG + VL + PA G L+ GD I+ +NG + KN+T + E+
Sbjct: 1 GGLGFSIRGGT---EGGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAEL 56
Query: 1103 IRN-GDSTVRLLIK 1115
++ V L ++
Sbjct: 57 LKKEVGEKVTLTVR 70
Score = 54.2 bits (131), Expect = 3e-09
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 830 NGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELM 889
G GF I GGTE G V + + PG A+ G L GD I++V+ V N + V EL+
Sbjct: 1 GGLGFSIRGGTEGG--VVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELL 57
Query: 890 GKASVYGRVTLGIR 903
K V +VTL +R
Sbjct: 58 -KKEVGEKVTLTVR 70
Score = 51.2 bits (123), Expect = 3e-08
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 446 RGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
GLGF+I GG E + + SV P PA G LQ GDV++ VN V T D+ +
Sbjct: 1 GGLGFSIRGGT---EGGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAEL 56
Query: 506 FQSISPGETVQLEV 519
+ GE V L V
Sbjct: 57 LKK-EVGEKVTLTV 69
Score = 49.2 bits (118), Expect = 1e-07
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 932 GFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKD 991
G GF I + G + + SPA+R+G L GD ILAVN D+ +L ++ L+K
Sbjct: 2 GLGF-SIRGGTEGGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKK 59
Query: 992 S 992
Sbjct: 60 E 60
Score = 34.6 bits (80), Expect = 0.023
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 635 LAEGDILIEINNLNVRNMCHGEVVQVLKDCQR 666
L GD+++ +N +V+N+ +V ++LK
Sbjct: 31 LQAGDVILAVNGTDVKNLTLEDVAELLKKEVG 62
>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-,
tail-specific-, and tricorn proteases, which function in
posttranslational protein processing, maturation, and
disassembly or degradation, in Bacteria, Archaea, and
plant chloroplasts. May be responsible for substrate
recognition and/or binding, as most PDZ domains bind
C-terminal polypeptides, and binding to internal
(non-C-terminal) polypeptides and even to lipids has been
demonstrated. In this subfamily of protease-associated
PDZ domains a C-terminal beta-strand forms the
peptide-binding groove base, a circular permutation with
respect to PDZ domains found in Eumetazoan signaling
proteins.
Length = 85
Score = 56.1 bits (136), Expect = 7e-10
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 1060 LFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRN-GDSTVRLLIKRGG 1118
L + + PAA G +K GD IV I+G ++ + ++++R + VRL +KRG
Sbjct: 15 LVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRGD 73
Query: 1119 S 1119
Sbjct: 74 G 74
Score = 41.1 bits (97), Expect = 2e-04
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 931 EGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIK 990
G G + + G I ++ SPA ++G + GD I+A++ + L ++V L++
Sbjct: 2 GGIGLEL--KYDDGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLR 58
Query: 991 -DSGYCVTLTI 1000
+G V LT+
Sbjct: 59 GKAGTKVRLTL 69
Score = 38.0 bits (89), Expect = 0.002
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 20/100 (20%)
Query: 831 GFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELM- 889
G G + + + I ++PG A G + GD IV++D V S VV+L+
Sbjct: 3 GIGLEL---KYDDGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLR 58
Query: 890 GKASVYGR-VTLGIRRKVMPPAETTSMMLGYPYDVTITRR 928
GKA G V L ++R G P +VT+TR
Sbjct: 59 GKA---GTKVRLTLKRGD-----------GEPREVTLTRL 84
Score = 37.6 bits (88), Expect = 0.003
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
G+G + + L I SV+P PAA G ++ GD++V ++ + V G + D+V +
Sbjct: 3 GIGLEL----KYDDGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLL 57
Query: 507 QSISPGETVQLEVCRGYPLPFD 528
+ G V+L + RG P +
Sbjct: 58 RG-KAGTKVRLTLKRGDGEPRE 78
>gnl|CDD|237809 PRK14738, gmk, guanylate kinase; Provisional.
Length = 206
Score = 57.4 bits (139), Expect = 4e-09
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 146 VPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGLYEGNHYGTPK-PVKE 199
V TTR R GE++GVDY F++ EEF+++ LLE GN+YG PK PV++
Sbjct: 44 VTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYYGVPKAPVRQ 98
>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase.
Length = 183
Score = 56.2 bits (136), Expect = 7e-09
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 146 VPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGLYEGNHYGTPKP 196
V TTR PR GE++G DY F+S EE + + LE + GN+YGT K
Sbjct: 34 VSHTTRPPRPGEVDGKDYHFVSKEEMENDISANEFLEYAEFNGNYYGTSKE 84
>gnl|CDD|173199 PRK14737, gmk, guanylate kinase; Provisional.
Length = 186
Score = 54.2 bits (130), Expect = 4e-08
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 142 YLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGLYEGNHYGTP-KPVKEP 200
+L ++ TTR PR G+ G Y FL+IEEFK+ G LE N+YGTP +++
Sbjct: 31 FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGTPKAFIEDA 90
Query: 201 Y 201
+
Sbjct: 91 F 91
>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the
WWP or rsp5 domain; around 40 amino acids; functions as
an interaction module in a diverse set of signalling
proteins; binds specific proline-rich sequences but at
low affinities compared to other peptide recognition
proteins such as antibodies and receptors; WW domains
have a single groove formed by a conserved Trp and Tyr
which recognizes a pair of residues of the sequence
X-Pro; variable loops and neighboring domains confer
specificity in this domain; there are five distinct
groups based on binding: 1) PPXY motifs 2) the PPLP
motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR
motifs.
Length = 31
Score = 47.9 bits (115), Expect = 2e-07
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 297 PPRWEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
PP WE+ + G VY+ +HN+ + W DPR
Sbjct: 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPRE 31
Score = 44.4 bits (106), Expect = 3e-06
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 343 PYGWERIDDPAYGTYYIDHVNKQTQYENPVL 373
P GWE DP YY +H K+TQ+E+P
Sbjct: 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPRE 31
>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues. Also
known as the WWP or rsp5 domain. Binds proline-rich
polypeptides.
Length = 33
Score = 46.8 bits (112), Expect = 4e-07
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 295 PLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
PLPP WE+ G Y+ +H + + W PR
Sbjct: 1 PLPPGWEERKDPDGRPYYYNHETKETQWEKPRE 33
Score = 45.3 bits (108), Expect = 2e-06
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 342 LPYGWERIDDPAYGTYYIDHVNKQTQYENPVL 373
LP GWE DP YY +H K+TQ+E P
Sbjct: 2 LPPGWEERKDPDGRPYYYNHETKETQWEKPRE 33
>gnl|CDD|215899 pfam00397, WW, WW domain. The WW domain is a protein module with
two highly conserved tryptophans that binds proline-rich
peptide motifs in vitro.
Length = 30
Score = 45.6 bits (109), Expect = 1e-06
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 296 LPPRWEKAYTEKGEVYFIDHNSSTSSWLDP 325
LPP WE+ G Y+ +HN+ + W P
Sbjct: 1 LPPGWEERTDTDGRPYYYNHNTGETQWERP 30
Score = 44.1 bits (105), Expect = 4e-06
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 342 LPYGWERIDDPAYGTYYIDHVNKQTQYENP 371
LP GWE D YY +H +TQ+E P
Sbjct: 1 LPPGWEERTDTDGRPYYYNHNTGETQWERP 30
>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc
metalloprotases, presumably membrane-associated or
integral membrane proteases, which may be involved in
signalling and regulatory mechanisms. May be responsible
for substrate recognition and/or binding, as most PDZ
domains bind C-terminal polypeptides, and binding to
internal (non-C-terminal) polypeptides and even to lipids
has been demonstrated. In this subfamily of
protease-associated PDZ domains a C-terminal beta-strand
forms the peptide-binding groove base, a circular
permutation with respect to PDZ domains found in
Eumetazoan signaling proteins.
Length = 79
Score = 46.5 bits (111), Expect = 2e-06
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1064 QIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIR-NGDSTVRLLIKRGGSVV 1121
++ PAA G LK GD I+ ING K+ + ++ ++ N + L ++R G +
Sbjct: 18 EVVPGSPAAKAG-LKAGDRILAINGQKIKSWE--DLVDAVQENPGKPLTLTVERNGETI 73
Score = 38.4 bits (90), Expect = 0.001
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
LGF G I VVP PAA G L+ GD ++ +N + + + D+V
Sbjct: 2 ILGFVPGGPPIE----PVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKSWE--DLVDAV 54
Query: 507 QSISPGETVQLEVCRG 522
Q +PG+ + L V R
Sbjct: 55 QE-NPGKPLTLTVERN 69
Score = 36.4 bits (85), Expect = 0.007
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 932 GFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKD 991
GFV + IG ++ SPA ++G L GD ILA+N I S ++V+ +++
Sbjct: 2 ILGFVPGGPPIEP--VIGEVVPGSPAAKAG-LKAGDRILAINGQKIKSW--EDLVDAVQE 56
Query: 992 SG 993
+
Sbjct: 57 NP 58
Score = 30.7 bits (70), Expect = 0.67
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 831 GFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDN 874
GF G E IG +VPG A G L GD I++++
Sbjct: 2 ILGFVPGGPPIE---PVIGEVVPGSPAAKAG-LKAGDRILAING 41
>gnl|CDD|238487 cd00987, PDZ_serine_protease, PDZ domain of tryspin-like serine
proteases, such as DegP/HtrA, which are oligomeric
proteins involved in heat-shock response, chaperone
function, and apoptosis. May be responsible for substrate
recognition and/or binding, as most PDZ domains bind
C-terminal polypeptides, though binding to internal
(non-C-terminal) polypeptides and even to lipids has been
demonstrated. In this subfamily of protease-associated
PDZ domains a C-terminal beta-strand forms the
peptide-binding groove base, a circular permutation with
respect to PDZ domains found in Eumetazoan signaling
proteins.
Length = 90
Score = 46.1 bits (110), Expect = 3e-06
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 1050 RGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTH-AEAIEIIRNGDS 1108
G + L V + PAA G LK GD I+ +NG K++ A+ ++ GD
Sbjct: 17 ELGLKDTKGVL-VASVDPGSPAAKAG-LKPGDVILAVNGKPVKSVADLRRALAELKPGD- 73
Query: 1109 TVRLLIKRGG 1118
V L + RGG
Sbjct: 74 KVTLTVLRGG 83
Score = 42.6 bits (101), Expect = 5e-05
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
+ SV P PAA G L+ GDV++ VN K V D+ + PG+ V L V RG
Sbjct: 28 VASVDPGSPAAKAG-LKPGDVILAVNGKPVKSVA--DLRRALAELKPGDKVTLTVLRG 82
Score = 31.1 bits (71), Expect = 0.60
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 945 GSTIGRIIEDSPADRSGELHLGDHILAVNHVDI 977
G + + SPA ++G L GD ILAVN +
Sbjct: 25 GVLVASVDPGSPAAKAG-LKPGDVILAVNGKPV 56
>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ family.
This family consists of a set proteins various
designated DegP, heat shock protein HtrA, and protease
DO. The ortholog in Pseudomonas aeruginosa is designated
MucD and is found in an operon that controls mucoid
phenotype. This family also includes the DegQ (HhoA)
paralog in E. coli which can rescue a DegP mutant, but
not the smaller DegS paralog, which cannot. Members of
this family are located in the periplasm and have
separable functions as both protease and chaperone.
Members have a trypsin domain and two copies of a PDZ
domain. This protein protects bacteria from thermal and
other stresses and may be important for the survival of
bacterial pathogens.// The chaperone function is dominant
at low temperatures, whereas the proteolytic activity is
turned on at elevated temperatures [Protein fate, Protein
folding and stabilization, Protein fate, Degradation of
proteins, peptides, and glycopeptides].
Length = 428
Score = 48.8 bits (117), Expect = 1e-05
Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 34/187 (18%)
Query: 945 GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDS--GYCVTLTI-- 1000
G+ + +++ SPA+++G L GD I +VN I S ++ I G VTL I
Sbjct: 258 GALVAQVLPGSPAEKAG-LKAGDVITSVNGKPISS--FADLRRAIGTLKPGKKVTLGILR 314
Query: 1001 -GAP----ISGDDASSTTSVSAASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGREF 1055
G ++ + + S+ E + L +G
Sbjct: 315 KGKEKTITVTLGASPEEQASSSNPFLGLTVANLSPEIRKELRLKGDVKG----------- 363
Query: 1056 QNMALFVLQIAENGPAALDGHLKVGDEIVEINGI---NTKNMTHAEAIEIIRNGDSTVRL 1112
+ V ++ PAA G L+ GD I+ +N + + + + + G V L
Sbjct: 364 ----VVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSSVAELR--KVLARAKKGGR-VAL 415
Query: 1113 LIKRGGS 1119
LI RGG+
Sbjct: 416 LILRGGA 422
Score = 40.7 bits (96), Expect = 0.004
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 23/110 (20%)
Query: 433 IGERIHSSLVKSL-----------RG-LGFTIVGGDDSKEEFLQIKS--------VVPNG 472
IG I S++ K++ RG LG TI + L ++ V+P
Sbjct: 209 IGFAIPSNMAKNVVDQLIEGGKVKRGWLGVTIQEVTSDLAKSLGLEKQRGALVAQVLPGS 268
Query: 473 PAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
PA + L+ GDV+ VN K + + D+ ++ PG+ V L + R
Sbjct: 269 PAE-KAGLKAGDVITSVNGKPI--SSFADLRRAIGTLKPGKKVTLGILRK 315
Score = 29.9 bits (68), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCV 494
+ VV PAA G LQ GDV++ VN + V
Sbjct: 366 VTKVVSGSPAARAG-LQPGDVILSVNQQPV 394
>gnl|CDD|221961 pfam13180, PDZ_2, PDZ domain.
Length = 81
Score = 43.8 bits (104), Expect = 2e-05
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 1062 VLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNG--DSTVRLLIKRGG 1118
V+ + E PAA G LK GD I+ I+G ++T E IE+I NG TV+L + R G
Sbjct: 17 VVSVKEGSPAAKAG-LKPGDIILSIDGKKVNSLT--ELIEVILNGKPGDTVKLTVYRDG 72
Score = 36.1 bits (84), Expect = 0.009
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
+G +V + + + + SV PAA + L+ GD+++ ++ K V T +++ V
Sbjct: 2 DIGVRVVQNEGT---GVTVVSVKEGSPAA-KAGLKPGDIILSIDGKKVNSLT--ELIEVI 55
Query: 507 QSISPGETVQLEVCRG 522
+ PG+TV+L V R
Sbjct: 56 LNGKPGDTVKLTVYRD 71
Score = 34.1 bits (79), Expect = 0.049
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 938 ISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSL 980
+ G T+ + E SPA ++G L GD IL+++ + SL
Sbjct: 7 VVQNEGTGVTVVSVKEGSPAAKAG-LKPGDIILSIDGKKVNSL 48
Score = 29.5 bits (67), Expect = 1.6
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 833 GFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKA 892
G R+V EG+ V++ + G A G L GD I+S+D V + + ++E++
Sbjct: 4 GVRVVQ--NEGTGVTVVSVKEGSPAAKAG-LKPGDIILSIDGKKVNSLT--ELIEVILNG 58
Query: 893 SVYGRVTLGIRRK 905
V L + R
Sbjct: 59 KPGDTVKLTVYRD 71
>gnl|CDD|223864 COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer
membrane].
Length = 406
Score = 47.3 bits (113), Expect = 4e-05
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 1059 ALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRN-GDSTVRLLIKRG 1117
+ V+ + PAA G +K GD I++I+G + ++ EA+++IR + V L I R
Sbjct: 113 GVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA 171
Query: 1118 G 1118
G
Sbjct: 172 G 172
Score = 38.5 bits (90), Expect = 0.020
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 926 TRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEI 985
T E G G + + G + I+ SPA ++G + GD I+ ++ + + E
Sbjct: 95 TSGEFGGIGIELQME-DIGGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEA 152
Query: 986 VNLIK-DSGYCVTLTIGAPISG 1006
V LI+ G VTLTI G
Sbjct: 153 VKLIRGKPGTKVTLTILRAGGG 174
Score = 38.5 bits (90), Expect = 0.021
Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 23/153 (15%)
Query: 427 LNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVL 486
L+P++ + G+G + +++ S + PAA ++ GDV+
Sbjct: 83 LDPEDA--AEFRTDTSGEFGGIGIELQ---MEDIGGVKVVSPIDGSPAAK-AGIKPGDVI 136
Query: 487 VYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDPNTEVVT-------- 538
+ ++ K V G + + V + + PG V L + R VT
Sbjct: 137 IKIDGKSVGGVSLDEAVKLIRGK-PGTKVTLTILR-------AGGGKPFTVTLTREEIEL 188
Query: 539 -TVAVNAPDLDNGSDRHLYMSANDFTDQSVKSM 570
VA + G R Y+ F + + + +
Sbjct: 189 EDVAAKEKVEEGGKGRIGYIRIPSFGEGTYEDL 221
Score = 37.7 bits (88), Expect = 0.034
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 841 EEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELM-GKASVYGR-V 898
E+ V + + G A G + GD I+ +D SV S V+L+ GK G V
Sbjct: 109 EDIGGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKP---GTKV 164
Query: 899 TLGIRRKVMPPAETTSMMLGYPYDVTITRRE 929
TL I R G P+ VT+TR E
Sbjct: 165 TLTILRAGG----------GKPFTVTLTREE 185
>gnl|CDD|238491 cd00991, PDZ_archaeal_metalloprotease, PDZ domain of archaeal zinc
metalloprotases, presumably membrane-associated or
integral membrane proteases, which may be involved in
signalling and regulatory mechanisms. May be responsible
for substrate recognition and/or binding, as most PDZ
domains bind C-terminal polypeptides, and binding to
internal (non-C-terminal) polypeptides and even to
lipids has been demonstrated. In this subfamily of
protease-associated PDZ domains a C-terminal beta-strand
forms the peptide-binding groove base, a circular
permutation with respect to PDZ domains found in
Eumetazoan signaling proteins.
Length = 79
Score = 41.6 bits (98), Expect = 1e-04
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 464 QIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGY 523
I V+ PA L TGDV+ +N + D + + PGE + + V
Sbjct: 13 VIVGVIVGSPAENAV-LHTGDVIYSINGTPITTLE--DFMEALKPTKPGEVITVTVLPST 69
>gnl|CDD|223343 COG0265, DegQ, Trypsin-like serine proteases, typically
periplasmic, contain C-terminal PDZ domain
[Posttranslational modification, protein turnover,
chaperones].
Length = 347
Score = 42.2 bits (99), Expect = 0.001
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
+ V+P PAA G ++ GD++ VN K V + D+V+ S PG+ V L++ RG
Sbjct: 274 VLGVLPGSPAAKAG-IKAGDIITAVNGKPV--ASLSDLVAAVASNRPGDEVALKLLRG 328
Score = 36.4 bits (84), Expect = 0.085
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 1060 LFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNG--DSTVRLLIKRG 1117
VL + PAA G +K GD I +NG + ++ + + + V L + RG
Sbjct: 272 AVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVAS--LSDLVAAVASNRPGDEVALKLLRG 328
Query: 1118 G 1118
G
Sbjct: 329 G 329
>gnl|CDD|234386 TIGR03900, prc_long_Delta, putative carboxyl-terminal-processing
protease, deltaproteobacterial. This model describes a
multidomain protein of about 1070 residues, restricted to
the order Myxococcales in the Deltaproteobacteria.
Members contain a PDZ domain (pfam00595), an S41 family
peptidase domain (pfam03572), and an SH3 domain
(pfam06347). A core region of this family, including PDZ
and S41 regions, is described by TIGR00225, C-terminal
processing peptidase, which recognizes the Prc protease.
The species distribution of this family approximates that
of largely Deltaproteobacterial C-terminal putative
protein-sorting domain, TIGR03901, analogous to LPXTG and
PEP-CTERM, but the co-occurrence may reflect shared
restriction to the Myxococcales rather than a
substrate/target relationship.
Length = 973
Score = 39.8 bits (93), Expect = 0.010
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 1041 GTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAI 1100
G G +R L V+++ PAA G L+ D IV+I+ +T NMT +A+
Sbjct: 140 GGLGIVIGMRDRN------LTVVRVIPGTPAARAG-LQRNDVIVKIDDESTVNMTLNDAV 192
Query: 1101 EIIRNG-DSTVRLLIKRGG 1118
+R D+ V + ++R G
Sbjct: 193 GRLRGPPDTKVTIWVRREG 211
Score = 31.7 bits (72), Expect = 3.2
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 926 TRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEI 985
TR G G VI T+ R+I +PA R+G L D I+ ++ +++ +
Sbjct: 135 TRGAFGGLGIVIGMRDRNL--TVVRVIPGTPAARAG-LQRNDVIVKIDDESTVNMTLNDA 191
Query: 986 VNLIK-DSGYCVTLTI 1000
V ++ VT+ +
Sbjct: 192 VGRLRGPPDTKVTIWV 207
>gnl|CDD|238490 cd00990, PDZ_glycyl_aminopeptidase, PDZ domain associated with
archaeal and bacterial M61 glycyl-aminopeptidases. May be
responsible for substrate recognition and/or binding, as
most PDZ domains bind C-terminal polypeptides, and
binding to internal (non-C-terminal) polypeptides and
even to lipids has been demonstrated. In this subfamily
of protease-associated PDZ domains a C-terminal
beta-strand is presumed to form the peptide-binding
groove base, a circular permutation with respect to PDZ
domains found in Eumetazoan signaling proteins.
Length = 80
Score = 35.9 bits (83), Expect = 0.010
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 1065 IAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGG 1118
+ ++ PA G L GDE+V +NG + + ++ + GD V L + R
Sbjct: 19 VRDDSPADKAG-LVAGDELVAVNGWRVDAL--QDRLKEYQAGD-PVELTVFRDD 68
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational
modification, protein turnover, chaperones].
Length = 872
Score = 39.8 bits (93), Expect = 0.010
Identities = 32/203 (15%), Positives = 63/203 (31%), Gaps = 26/203 (12%)
Query: 251 VNMGNSSDY---ELNDNNGRESPPSYYNPYIGQGLKEIDPLLELDLGPLPPRWEKAYTEK 307
VN +SS + P + LK D P W + +
Sbjct: 343 VNNDDSSSIKDLPHQVGSNPFLEAH---PEFSELLKNQSRGTTRDFRNKPTGWSSSIEDL 399
Query: 308 GEVYFIDHNSSTSSWLDPRLCK---------------FQKKLEDCSDDELPYGWERIDDP 352
G+ F D +S+S++ D R + Q++ + L GW+ +
Sbjct: 400 GQFLFSDFLTSSSTYEDLRREQLGRESDESFYVASNVQQQRASR--EGPLLSGWKTRLNN 457
Query: 353 AYGTYYIDHVNKQTQ-YENPVLQAKHRDQGAGPSEMDDNEHKVKDS--PGKRIAPQARNT 409
Y Y+++H K ++ + ++ +D K+ S +I +
Sbjct: 458 LYRFYFVEHRKKTLTKNDSRLGSFISLNKLDIRRIKEDKRRKLFYSLKQKAKIFDPYLHI 517
Query: 410 LVSTSNRSNNDENYFFTLNPDEL 432
V + + D+L
Sbjct: 518 KVRRDRVFEDSYREIMDESGDDL 540
>gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase.
Length = 398
Score = 39.1 bits (91), Expect = 0.011
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 145 TVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGLYEGNHYGT 193
+V TTR PR+ E +GV Y F ++ K G LE GN YGT
Sbjct: 166 SVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYGT 214
>gnl|CDD|238486 cd00986, PDZ_LON_protease, PDZ domain of ATP-dependent LON serine
proteases. Most PDZ domains bind C-terminal polypeptides,
though binding to internal (non-C-terminal) polypeptides
and even to lipids has been demonstrated. In this
bacterial subfamily of protease-associated PDZ domains a
C-terminal beta-strand is thought to form the
peptide-binding groove base, a circular permutation with
respect to PDZ domains found in Eumetazoan signaling
proteins.
Length = 79
Score = 35.1 bits (81), Expect = 0.021
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 1054 EFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEII---RNGDSTV 1110
++ ++V + E PAA G LK GD I+ ++G K E I+ I + GD TV
Sbjct: 4 DYTYHGVYVTSVVEGMPAA--GKLKAGDHIIAVDGKPFKEAE--ELIDYIQSKKEGD-TV 58
Query: 1111 RLLIKRGG 1118
+L +KR
Sbjct: 59 KLKVKREE 66
Score = 32.8 bits (75), Expect = 0.14
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 467 SVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
SVV PA G L+ GD ++ V+ K +++ QS G+TV+L+V R
Sbjct: 14 SVVEGMPA--AGKLKAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKRE 65
>gnl|CDD|232883 TIGR00225, prc, C-terminal peptidase (prc). A C-terminal peptidase
with different substrates in different species including
processing of D1 protein of the photosystem II reaction
center in higher plants and cleavage of a peptide of 11
residues from the precursor form of penicillin-binding
protein in E.coli E.coli and H influenza have the most
distal branch of the tree and their proteins have an
N-terminal 200 amino acids that show no homology to other
proteins in the database [Protein fate, Degradation of
proteins, peptides, and glycopeptides, Protein fate,
Protein modification and repair].
Length = 334
Score = 37.7 bits (88), Expect = 0.026
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 1067 ENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDST-VRLLIKRGGSVVA 1122
E PA G +K GD+I++ING + M+ +A+ +IR T V L I R G
Sbjct: 71 EGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGKSKP 126
Score = 37.0 bits (86), Expect = 0.050
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 917 LGYPYDVTITRRENEGFGFVIISSLNKAGSTIGR---------IIEDSPADRSGELHLGD 967
L PY ++ + F SL G +G E SPA+++G + GD
Sbjct: 26 LNDPYTRYLSPETAKSFSETTSGSLEGIGIQVGMDDGEIVIVSPFEGSPAEKAG-IKPGD 84
Query: 968 HILAVNHVDIMSLHHGEIVNLIK-DSGYCVTLTI 1000
I+ +N + + + V LI+ G V+L I
Sbjct: 85 KIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEI 118
>gnl|CDD|234035 TIGR02860, spore_IV_B, stage IV sporulation protein B. SpoIVB, the
stage IV sporulation protein B of endospore-forming
bacteria such as Bacillus subtilis, is a serine
proteinase, expressed in the spore (rather than mother
cell) compartment, that participates in a proteolytic
activation cascade for Sigma-K. It appears to be
universal among endospore-forming bacteria and occurs
nowhere else [Cellular processes, Sporulation and
germination].
Length = 402
Score = 37.3 bits (87), Expect = 0.044
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 1070 PAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSVV 1121
P G +++GD I++ING KNM + I + G + L I+RGG ++
Sbjct: 125 PGEEAG-IQIGDRILKINGEKIKNMDDLANL-INKAGGEKLTLTIERGGKII 174
>gnl|CDD|223821 COG0750, COG0750, Predicted membrane-associated Zn-dependent
proteases 1 [Cell envelope biogenesis, outer membrane].
Length = 375
Score = 34.8 bits (80), Expect = 0.27
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 1043 RGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEI 1102
F + G + V ++A AAL G L+ GD IV ++G + + +
Sbjct: 116 FVVLFFVIGLVPV--ASPVVGEVAPKSAAALAG-LRPGDRIVAVDGEKVASWDDVRRLLV 172
Query: 1103 IRNGDSTVRLLI 1114
GD L I
Sbjct: 173 AAAGDVFNLLTI 184
>gnl|CDD|182820 PRK10898, PRK10898, serine endoprotease; Provisional.
Length = 353
Score = 34.6 bits (80), Expect = 0.30
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 463 LQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTH-HDMVSVFQSISPGETVQLEVCR 521
+ + V P+GPAA G +Q D+++ VN+K + D V+ I PG + + V R
Sbjct: 281 IVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISALETMDQVA---EIRPGSVIPVVVMR 336
Score = 31.9 bits (73), Expect = 2.1
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 14/60 (23%)
Query: 1040 RGTRGFGFSIRGGREFQNM-----------ALFVLQIAENGPAALDGHLKVGDEIVEING 1088
R RG+ I GGRE + + V +++ +GPAA G ++V D I+ +N
Sbjct: 252 RVIRGY-IGI-GGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAAKAG-IQVNDLIISVNN 308
>gnl|CDD|236873 PRK11186, PRK11186, carboxy-terminal protease; Provisional.
Length = 667
Score = 34.5 bits (80), Expect = 0.38
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 435 ERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYV 489
E+ ++ + SL G+G + DD + I S+V GPAA L GD +V V
Sbjct: 233 EQFNTEMNLSLEGIGAVLQMDDD----YTVINSLVAGGPAAKSKKLSVGDKIVGV 283
>gnl|CDD|233696 TIGR02038, protease_degS, periplasmic serine pepetdase DegS. This
family consists of the periplasmic serine protease DegS
(HhoB), a shorter paralog of protease DO (HtrA, DegP)
and DegQ (HhoA). It is found in E. coli and several
other Proteobacteria of the gamma subdivision. It
contains a trypsin domain and a single copy of PDZ
domain (in contrast to DegP with two copies). A critical
role of this DegS is to sense stress in the periplasm
and partially degrade an inhibitor of sigma(E) [Protein
fate, Degradation of proteins, peptides, and
glycopeptides, Regulatory functions, Protein
interactions].
Length = 351
Score = 34.0 bits (78), Expect = 0.46
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 434 GERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKC 493
GE I+S +GLG + G + I V PNGPAA G + DV++ + K
Sbjct: 261 GEDINSV---VAQGLGLPDLRG-------IVITGVDPNGPAARAG-ILVRDVILKYDGKD 309
Query: 494 VLGYTHHDMVSVFQSISPGETVQLEVCR 521
V+G +++ PG V + V R
Sbjct: 310 VIG--AEELMDRIAETRPGSKVMVTVLR 335
>gnl|CDD|232801 TIGR00054, TIGR00054, RIP metalloprotease RseP. Members of this
nearly universal bacterial protein family are regulated
intramembrane proteolysis (RIP) proteases. Older and
synonymous gene symbols include yaeL in E. coli, mmpA in
Caulobacter crescentus, etc. This family includes a
region that hits the PDZ domain, found in a number of
proteins targeted to the membrane by binding to a peptide
ligand. The N-terminal region of this family contains a
perfectly conserved motif HEXGH as found in a number of
metalloproteinases, where the Glu is the active site and
the His residues coordinate the metal cation [Protein
fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 419
Score = 33.3 bits (76), Expect = 0.81
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 1062 VLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGG--- 1118
+ + N PA G LK GD I ING ++ T + G S + + ++R G
Sbjct: 206 LSDVTPNSPAEKAG-LKEGDYIQSINGEKLRSWTDFVSAVKENPGKS-MDIKVERNGETL 263
Query: 1119 -SVVAPTDNA-AGIY 1131
+ P GI
Sbjct: 264 SISLTPEAKGKIGIG 278
>gnl|CDD|177681 PLN00049, PLN00049, carboxyl-terminal processing protease;
Provisional.
Length = 389
Score = 32.4 bits (74), Expect = 1.6
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 1037 ELSRGTR----GFGFSIRGGREFQNMA--LFVLQIAENGPAALDGHLKVGDEIVEINGIN 1090
L GT+ G G + L V+ A GPAA G ++ GD I+ I+G +
Sbjct: 75 SLRSGTKGAVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTS 133
Query: 1091 TKNMTHAEAIEIIRNGD-STVRLLIKRGG 1118
T+ ++ EA + ++ + S+V L ++RG
Sbjct: 134 TEGLSLYEAADRLQGPEGSSVELTLRRGP 162
>gnl|CDD|226483 COG3975, COG3975, Predicted protease with the C-terminal PDZ domain
[General function prediction only].
Length = 558
Score = 32.0 bits (73), Expect = 1.9
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSS 881
R+ G ++ EG I + PGG A G L GD+IV+++ +S
Sbjct: 443 FTPKPREAYYLGLKV---KSEGGHEKITFVFPGGPAYKAG-LSPGDKIVAINGISDQLDR 498
Query: 882 HH 883
+
Sbjct: 499 YK 500
Score = 30.9 bits (70), Expect = 4.4
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 1062 VLQIAENGPAALDGHLKVGDEIVEINGINTKNMTH--AEAIEIIRNG-DSTVRLLIKRGG 1118
+ + GPA G L GD+IV INGI+ + + + I++ L+K GG
Sbjct: 466 ITFVFPGGPAYKAG-LSPGDKIVAINGISDQLDRYKVNDKIQVHVFREGRLREFLVKLGG 524
Query: 1119 SV 1120
Sbjct: 525 DP 526
>gnl|CDD|226011 COG3480, SdrC, Predicted secreted protein containing a PDZ domain
[Signal transduction mechanisms].
Length = 342
Score = 31.2 bits (71), Expect = 3.1
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 1061 FVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRN---GDSTVRLLIKR 1116
+VL + +N P G L+ GD I+ ++G + E I+ + + GD V + +R
Sbjct: 133 YVLSVIDNSPFK--GKLEAGDTIIAVDGEPFTSS--DELIDYVSSKKPGD-EVTIDYER 186
>gnl|CDD|182723 PRK10779, PRK10779, zinc metallopeptidase RseP; Provisional.
Length = 449
Score = 30.8 bits (70), Expect = 4.2
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 464 QIKSV---VPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVC 520
QI+ V V AA + LQ GD +V V+ + + + V++ + +PG+ + LE+
Sbjct: 220 QIEPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQW--QTFVTLVRD-NPGKPLALEIE 276
Query: 521 R-GYPLPF 527
R G PL
Sbjct: 277 RQGSPLSL 284
>gnl|CDD|192537 pfam10329, DUF2417, Region of unknown function (DUF2417). This is
a region of a family of proteins conserved in fungi some
of whose members also have the Abhydrolase_1, pfam00561,
domain in their sequence. The function of this region is
not known.
Length = 227
Score = 30.0 bits (68), Expect = 6.1
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 783 FEHEQPLPSNDMRYIPPDNLGLPRVRPTNIKSVEYSDVMVITLL 826
E LP + Y+ PD+ P V P N+ S+ + + LL
Sbjct: 1 DERTPLLPRQNPAYLSPDD---PAVSPYNLWSIRALRWISVILL 41
>gnl|CDD|129173 TIGR00063, folE, GTP cyclohydrolase I. alternate names: Punch
(Drosophila),GTP cyclohydrolase I (EC 3.5.4.16)
catalyzes the biosynthesis of formic acid and
dihydroneopterin triphosphate from GTP. This reaction is
the first step in the biosynthesis of tetrahydrofolate
in prokaryotes, of tetrahydrobiopterin in vertebrates,
and of pteridine-containing pigments in insects
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Folic acid].
Length = 180
Score = 29.3 bits (66), Expect = 7.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 867 DEIVSVDNLSVLNSSHHHVVELMGKASV 894
DE+V V +++ ++ HH+V GKA V
Sbjct: 57 DEMVLVRDITFTSTCEHHLVPFDGKAHV 84
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like
subgroup. Members of this group may play a role in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 345
Score = 29.7 bits (67), Expect = 9.5
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 630 QRCKN-LAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIV--QRSRLQH 681
+R G+ L E N+N M G+ ++VL++ Q + N +V + S+L H
Sbjct: 252 ERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTH 306
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.133 0.390
Gapped
Lambda K H
0.267 0.0779 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 58,377,962
Number of extensions: 5797297
Number of successful extensions: 3658
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3624
Number of HSP's successfully gapped: 100
Length of query: 1145
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 1038
Effective length of database: 6,191,724
Effective search space: 6427009512
Effective search space used: 6427009512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (28.3 bits)