RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6910
(1145 letters)
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane
associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 205 bits (522), Expect = 2e-55
Identities = 97/388 (25%), Positives = 158/388 (40%), Gaps = 60/388 (15%)
Query: 776 KRKESTSFEHEQPLPSNDMRYIPPDNLGLPRVRPTNIKSVEYS-DVMVITLLRQENGFGF 834
+ +++ +H N P P + E + ITL R +G GF
Sbjct: 15 QDEDTPPLKHSPAHLPNQANSPPVIVNTDTLEAPGYVNGTEGEMEYEEITLERGNSGLGF 74
Query: 835 RIVGGTE-----EGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELM 889
I GGT+ + + I I+PGGAA DGRL D I+ V+ + V +H VE +
Sbjct: 75 SIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEAL 134
Query: 890 GKASVYGRVTLGIRRKVMPPAETTSMMLGYPYDVTITRRENEGFGFVIISSL------NK 943
+A V L + R+ P + + L + +G GF I +
Sbjct: 135 KEAG--SIVRLYVMRRKPPAEKVMEIKL---------IKGPKGLGFSIAGGVGNQHIPGD 183
Query: 944 AGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAP 1003
+ +IIE A + G L +GD ILAVN V + + H + V +K++ V L + P
Sbjct: 184 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKP 243
Query: 1004 I----------------------------SGDDASSTTSVSAASHREYEEGGEH------ 1029
S T+++ S R Y +
Sbjct: 244 SNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEED 303
Query: 1030 -DEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEING 1088
+ I + RG+ G GF+I GG + +F+ I GPA L G L+ GD+I+ +NG
Sbjct: 304 IPREPRRIVIHRGSTGLGFNIVGGED--GEGIFISFILAGGPADLSGELRKGDQILSVNG 361
Query: 1089 INTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
++ +N +H +A ++N TV ++ +
Sbjct: 362 VDLRNASHEQAAIALKNAGQTVTIIAQY 389
Score = 121 bits (305), Expect = 2e-28
Identities = 73/415 (17%), Positives = 129/415 (31%), Gaps = 36/415 (8%)
Query: 593 ESDSEYLTIPIVKGAMGFGFTIA---DSSHGQK-----VKKILDR---QRCKNLAEGDIL 641
E + EY I + +G G GF+IA D+ H + KI+ + L D +
Sbjct: 55 EGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSI 114
Query: 642 IEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKTPTEMYTRPK 701
+ +N ++VR + H V+ LK+ + V R + +K K P +
Sbjct: 115 LFVNEVDVREVTHSAAVEALKEAGS--IVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIA 172
Query: 702 EIVARRP---KTPLVDTRSRSKTPTENYSEYYINKEL--------------KDLDINKNI 744
V + + T+ I ++ + KN
Sbjct: 173 GGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT 232
Query: 745 WDPQTTNPGFMQSNYSDSMSYCGGYNVYQVNKRKESTSFEHEQPLPSNDMRYIPPDNLGL 804
+D + Y S
Sbjct: 233 YDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYS 292
Query: 805 PRVRPTNIKSVEYSDVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLC 864
P + + + I + R G GF IVGG E+G + I I+ GG ADL G L
Sbjct: 293 PVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELR 351
Query: 865 TGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRK---VMPPAETTSMMLGYPY 921
GD+I+SV+ + + N+SH + A VT+ + K +
Sbjct: 352 KGDQILSVNGVDLRNASHEQAAIALKNAG--QTVTIIAQYKPEEYSRFEAKIHDLREQLM 409
Query: 922 DVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVD 976
+ ++ +A + + ++ GD + ++ D
Sbjct: 410 NSSLGSGTASLRSNPKRGFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGD 464
Score = 109 bits (272), Expect = 2e-24
Identities = 57/228 (25%), Positives = 98/228 (42%), Gaps = 34/228 (14%)
Query: 920 PYDVTITRRENEGFGFVIIS------SLNKAGSTIGRIIEDSPADRSGELHLGDHILAVN 973
++T+ R N G GF I + I +II A + G L + D IL VN
Sbjct: 60 YEEITLER-GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN 118
Query: 974 HVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSAASHREYEEGGEHDEQY 1033
VD+ + H V +K++G V L + E+
Sbjct: 119 EVDVREVTHSAAVEALKEAGSIVRLYVMRRK-----------------------PPAEKV 155
Query: 1034 HAIELSRGTRGFGFSIRGGREFQNM----ALFVLQIAENGPAALDGHLKVGDEIVEINGI 1089
I+L +G +G GFSI GG Q++ +++V +I E G A DG L++GD+I+ +N +
Sbjct: 156 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSV 215
Query: 1090 NTKNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAPTDNAAGIYSSDTSS 1137
+++ H +A+ ++N V L + + + A ++ S
Sbjct: 216 GLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQ 263
Score = 97.7 bits (242), Expect = 7e-21
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 4/136 (2%)
Query: 1003 PISGDDASSTTSVSAASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQNM---- 1058
P + + Y G E + +Y I L RG G GFSI GG + ++
Sbjct: 30 PNQANSPPVIVNTDTLEAPGYVNGTEGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDP 89
Query: 1059 ALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGG 1118
++F+ +I G AA DG L+V D I+ +N ++ + +TH+ A+E ++ S VRL + R
Sbjct: 90 SIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRK 149
Query: 1119 SVVAPTDNAAGIYSSD 1134
I
Sbjct: 150 PPAEKVMEIKLIKGPK 165
Score = 93.4 bits (231), Expect = 1e-19
Identities = 68/363 (18%), Positives = 119/363 (32%), Gaps = 84/363 (23%)
Query: 813 KSVEYSDVMVITLLRQENGFGFRIVGG-----TEEGSQVSIGHIVPGGAADLDGRLCTGD 867
+ VM I L++ G GF I GG + + + I+ GGAA DGRL GD
Sbjct: 148 RKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGD 207
Query: 868 EIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRK---------------------- 905
+I++V+++ + + H V + V L + +
Sbjct: 208 KILAVNSVGLEDVMHEDAVAALKNTY--DVVYLKVAKPSNAYLSDSYAPPDITTSYSQHL 265
Query: 906 ----------------------------VMPPAETTSMMLGYPYDVTITRRENEGFGFVI 937
V + P + I R + G GF I
Sbjct: 266 DNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVI-HRGSTGLGFNI 324
Query: 938 ISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVT 997
+ + G I I+ PAD SGEL GD IL+VN VD+ + H + +K++G VT
Sbjct: 325 VGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT 384
Query: 998 LTIGAPISGDDASSTTSVSAASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQN 1057
+ + EE + + H + G R
Sbjct: 385 IIA-------------------QYKPEEYSRFEAKIHDLREQLMNSSLGSGTASLRSNPK 425
Query: 1058 MALFVLQIAENGPAALDGHLKVG-----DEIVEINGINTKNMTHAEAIEIIRNGDSTVRL 1112
++ + + G L +++ + I+ + +A + + ++
Sbjct: 426 RGFYIRALFDYDKTKDCGFLSQALSFRFGDVLHV--IDAGDEEWWQARRVHSDSETDDIG 483
Query: 1113 LIK 1115
I
Sbjct: 484 FIP 486
Score = 86.9 bits (214), Expect = 2e-17
Identities = 59/306 (19%), Positives = 111/306 (36%), Gaps = 24/306 (7%)
Query: 435 ERIHSSLVKSLRGLGFTIVGGDDSKEEF----LQIKSVVPNGPAALEGHLQTGDVLVYVN 490
+ + L+K +GLGF+I GG ++ + + ++ G A +G LQ GD ++ VN
Sbjct: 154 KVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVN 213
Query: 491 DKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDPNTEVVTTVAVNAPDLDNG 550
+ H D V+ ++ + V L+V + + ++ T+ +
Sbjct: 214 SVGLEDVMHEDAVAALKNT--YDVVYLKVAKPSNAYLSDSYAPPDITTSYS-------QH 264
Query: 551 SDRHLYMSANDFTDQSVKSMPDLYTSEKMVKLERPSSTDLILESDSEYLTIPIVKGAMGF 610
D + S+ TD P V + D+ E I I +G+ G
Sbjct: 265 LDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDI----PREPRRIVIHRGSTGL 320
Query: 611 GFTIA--DSSHGQKVKKILDR---QRCKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQ 665
GF I + G + IL L +GD ++ +N +++RN H + LK+
Sbjct: 321 GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG 380
Query: 666 RNLEANIIVQRSRLQHKKTSPPFRSKTPTEMYTRPKEIVARRPKTPLVDTRSRSKTPTEN 725
+ + II Q ++ + M + A P R+ +
Sbjct: 381 QTVT--IIAQYKPEEYSRFEAKIHDLREQLMNSSLGSGTASLRSNPKRGFYIRALFDYDK 438
Query: 726 YSEYYI 731
+
Sbjct: 439 TKDCGF 444
Score = 73.8 bits (180), Expect = 2e-13
Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 8/151 (5%)
Query: 388 DDNEHKVKDSPGKRIAPQARNTLVSTSNRSNNDE--NYFFTLNPDELIGERIHSSLVKSL 445
++ +D+P + +P ++ N + +N E E +L +
Sbjct: 10 KKYRYQDEDTPPLKHSPAHLPNQANSPPVIVNTDTLEAPGYVNGTEGEMEYEEITLERGN 69
Query: 446 RGLGFTIVGGDD----SKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHD 501
GLGF+I GG D + + I ++P G AA +G L+ D +++VN+ V TH
Sbjct: 70 SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSA 129
Query: 502 MVSVFQSISPGETVQLEVCRGYPLPFDPNDP 532
V + G V+L V R P +
Sbjct: 130 AVEALK--EAGSIVRLYVMRRKPPAEKVMEI 158
Score = 67.2 bits (163), Expect = 2e-11
Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 4/157 (2%)
Query: 365 QTQYENPVLQAKHRDQGAGPSEMDDNEHKVKDSPGKRIAPQARNTLVSTSNRSNNDENYF 424
+ P ++H + T ++ ++
Sbjct: 237 YLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAK 296
Query: 425 FTLNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGD 484
L +++ E + + GLGF IVGG+D + F I ++ GPA L G L+ GD
Sbjct: 297 DLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIF--ISFILAGGPADLSGELRKGD 354
Query: 485 VLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
++ VN + +H + + G+TV +
Sbjct: 355 QILSVNGVDLRNASHEQAAIALK--NAGQTVTIIAQY 389
Score = 57.6 bits (138), Expect = 2e-08
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 93 NHCCRSGKTLTLRTVSSAYVTTDLRQFLNTRFPKGSV-DHDLQNIIRD--NLYLRTVPVT 149
+ +S VT + G D +++ + + + VP T
Sbjct: 504 WGSSSGSQGREDSVLSYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHT 563
Query: 150 TRTPRDGELNGVDYTFLSI-EEFKQLEKSGCLLESGLYEGNHYGT 193
TR R+ E++G DY F+S E+ ++ ++ +E+G Y + YGT
Sbjct: 564 TRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYGT 608
Score = 32.2 bits (72), Expect = 1.1
Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 9/118 (7%)
Query: 15 GTHWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFA-----YVTNINKEKVKGAEKYLEEK 69
GT + + +TL G L FS+ GG+D+ ++T I + L
Sbjct: 53 GTEGEMEYEEITLERGNSG-LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVN 111
Query: 70 AIILEIQGQKVAGYTRRDTIAWLNHCCRSGKTLTLRTVSSAYVTTDLRQFLNTRFPKG 127
IL + V T + L +G + L + + + + PKG
Sbjct: 112 DSILFVNEVDVREVTHSAAVEAL---KEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKG 166
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 176 bits (448), Expect = 1e-50
Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 19/210 (9%)
Query: 916 MLGYPYDVTITRRENEGFGFVIISSLNKAGS-TIGRIIEDSPADRSGELHLGDHILAVNH 974
V + ++E G + ++K G + + + A RS +L +GD+I AVN
Sbjct: 4 SFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNG 63
Query: 975 VDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSAASHREYEEGGEHDEQYH 1034
+++ H EI++L+K+ G V L + + +G +
Sbjct: 64 INLAKFRHDEIISLLKNVGERVVLEVEYELP---------------PVSIQGSSVMFRTV 108
Query: 1035 AIELSRGTRGFGFSIRGGREFQ---NMALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
+ L + FGF IRGG + + + + GPA +G +K GD ++ ++GI
Sbjct: 109 EVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRL 168
Query: 1092 KNMTHAEAIEIIRNGDSTVRLLIKRGGSVV 1121
THAEA+ I++ LLI+ SV+
Sbjct: 169 LGTTHAEAMSILKQCGQEATLLIEYDVSVM 198
Score = 171 bits (436), Expect = 6e-49
Identities = 48/200 (24%), Positives = 92/200 (46%), Gaps = 9/200 (4%)
Query: 816 EYSDVMVITLLRQEN-GFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDN 874
+ V+ L+++E G + GG ++ + + ++ GG A +L GD I +V+
Sbjct: 4 SFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNG 63
Query: 875 LSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSMMLGYPYDVTITRRENEGFG 934
+++ H ++ L+ RV L + ++ P + S ++ +VT+ +E FG
Sbjct: 64 INLAKFRHDEIISLLKNVG--ERVVLEVEYELPPVSIQGSSVMFRTVEVTL-HKEGNTFG 120
Query: 935 FVII-----SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLI 989
FVI I + PADR G + GD +L+V+ + ++ H E ++++
Sbjct: 121 FVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSIL 180
Query: 990 KDSGYCVTLTIGAPISGDDA 1009
K G TL I +S D+
Sbjct: 181 KQCGQEATLLIEYDVSVMDS 200
Score = 94.0 bits (234), Expect = 7e-22
Identities = 43/251 (17%), Positives = 76/251 (30%), Gaps = 62/251 (24%)
Query: 429 PDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVY 488
P G + + K LG T+ GG D + + ++ G AA L GD +
Sbjct: 2 PGSFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPR-VSNLRQGGIAARSDQLDVGDYIKA 60
Query: 489 VNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDPNTEVVTTVAVNAPDLD 548
VN + + H +++S+ + + GE V LEV P V
Sbjct: 61 VNGINLAKFRHDEIISLLK--NVGERVVLEVEYELPPVSIQGSSVMFRTVEV-------- 110
Query: 549 NGSDRHLYMSANDFTDQSVKSMPDLYTSEKMVKLERPSSTDLILESDSEYLTIPIVKGAM 608
L + I GA
Sbjct: 111 ------------------------------------------TLHKEGNTFGFVIRGGAH 128
Query: 609 GFGFTIADSSHGQKVKKILDRQ---RCKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQ 665
+ S + + R + GD L+ ++ + + H E + +LK C
Sbjct: 129 DD----RNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG 184
Query: 666 RNLEANIIVQR 676
+ EA ++++
Sbjct: 185 Q--EATLLIEY 193
Score = 81.3 bits (201), Expect = 2e-17
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 805 PRVRPTNIKSVEYSDVMVITLLRQENGFGFRIVGGTEEGSQ----VSIGHIVPGGAADLD 860
+ S + +TL ++ N FGF I GG + V I + PGG AD +
Sbjct: 92 ELPPVSIQGSSVMFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADRE 151
Query: 861 GRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKV 906
G + GD ++SVD + +L ++H + ++ + TL I V
Sbjct: 152 GTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG--QEATLLIEYDV 195
Score = 73.6 bits (181), Expect = 6e-15
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQ---IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGY 497
L K GF I GG + I V P GPA EG ++ GD L+ V+ +LG
Sbjct: 112 LHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGT 171
Query: 498 THHDMVSVFQSISPGETVQLEVCRGYPLP 526
TH + +S+ + G+ L + +
Sbjct: 172 THAEAMSILK--QCGQEATLLIEYDVSVM 198
Score = 52.4 bits (126), Expect = 1e-07
Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 9/109 (8%)
Query: 593 ESDSEYLTIPIVK-GAMGFGFTIA---DSSHGQKVKKILDR---QRCKNLAEGDILIEIN 645
S + ++K G T++ D +V + R L GD + +N
Sbjct: 3 GSFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVN 62
Query: 646 NLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKTPT 694
+N+ H E++ +LK+ + V+ +T
Sbjct: 63 GINLAKFRHDEIISLLKNVGE--RVVLEVEYELPPVSIQGSSVMFRTVE 109
Score = 34.7 bits (80), Expect = 0.11
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 17 HWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQ 76
++ V L +L +V GG D V+N+ + + L+ I +
Sbjct: 4 SFKGSTV-VELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVN 62
Query: 77 GQKVAGYTRRDTIAWLNHCCRSGKTLTLR 105
G +A + + I+ L G+ + L
Sbjct: 63 GINLAKFRHDEIISLL---KNVGERVVLE 88
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 167 bits (424), Expect = 2e-47
Identities = 42/203 (20%), Positives = 81/203 (39%), Gaps = 22/203 (10%)
Query: 920 PYDVTITRRENEGFGFVIISSLN-----KAGSTIGRIIEDSPADRSGELHLGDHILAVNH 974
+V +T GFG + S+ + I I DSPA+R G L +GD ++A+N
Sbjct: 7 TTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAING 66
Query: 975 VDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSAASHREYEEGGEHDEQYH 1034
+ E L++DS +T+ E +H
Sbjct: 67 IPTEDSTFEEANQLLRDSSITSKVTLEIE----------------FDVAESVIPSSGTFH 110
Query: 1035 AIELSRGTRGFGFSIRGGREFQN-MALFVLQIAENGPAALDGHLKVGDEIVEINGINTKN 1093
+ + G +I + L + I + A G L++GD+++ I+ I +
Sbjct: 111 VKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDS 170
Query: 1094 MTHAEAIEIIRNGDSTVRLLIKR 1116
+ +A++I++ + V+L I++
Sbjct: 171 CSMEDAVQILQQCEDLVKLKIRK 193
Score = 161 bits (410), Expect = 2e-45
Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 12/194 (6%)
Query: 818 SDVMVITLLRQEN-GFGFRIVGGT----EEGSQVSIGHIVPGGAADLDGRLCTGDEIVSV 872
++ + L GFG ++ G S I +I A+ G L GD ++++
Sbjct: 5 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAI 64
Query: 873 DNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSMMLGYPYDVTITRRENEG 932
+ + +S+ +L+ +S+ +VTL I V +S + V + ++ +
Sbjct: 65 NGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSS----GTFHVKLPKKHSVE 120
Query: 933 FGFVIISSLNKA---GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLI 989
G I S ++ I I + S A R+G L LGD +LA++++ + S + V ++
Sbjct: 121 LGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQIL 180
Query: 990 KDSGYCVTLTIGAP 1003
+ V L I
Sbjct: 181 QQCEDLVKLKIRKD 194
Score = 92.9 bits (231), Expect = 1e-21
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 1031 EQYHAIELSRG-TRGFGFSIRGGR---EFQNMALFVLQIAENGPAALDGHLKVGDEIVEI 1086
+ + L+ GFG ++G E + + I + PA G L++GD ++ I
Sbjct: 5 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAI 64
Query: 1087 NGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSV 1120
NGI T++ T EA +++R+ T ++ ++ V
Sbjct: 65 NGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDV 98
Score = 79.4 bits (196), Expect = 5e-17
Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Query: 802 LGLPRVRPTNIKSVEYSDVMVITLLRQEN-GFGFRIVGGT--EEGSQVSIGHIVPGGAAD 858
+ L + S + L ++ + G I + + G + I I G A
Sbjct: 90 VTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAH 149
Query: 859 LDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRR 904
G L GD+++++DN+ + + S V+++ + V L IR+
Sbjct: 150 RTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCE--DLVKLKIRK 193
Score = 71.0 bits (174), Expect = 5e-14
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 446 RGLGFTIVGGDDSKEEF-LQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVS 504
LG TI K L I + A G L+ GD L+ +++ + + D V
Sbjct: 119 VELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQ 178
Query: 505 VFQSISPGETVQLEVCRGY 523
+ Q + V+L++ +
Sbjct: 179 ILQ--QCEDLVKLKIRKDE 195
Score = 71.0 bits (174), Expect = 5e-14
Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 4/108 (3%)
Query: 434 GERIHSSLVKS-LRGLGFTIVGGDDSKEEFLQ---IKSVVPNGPAALEGHLQTGDVLVYV 489
E L + G G + G + E I + + PA G LQ GD ++ +
Sbjct: 5 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAI 64
Query: 490 NDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDPNTEVV 537
N T + + + S V LE+ P+ V
Sbjct: 65 NGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVK 112
Score = 56.7 bits (137), Expect = 4e-09
Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 11/110 (10%)
Query: 576 SEKMVKLERPSSTDLILESDSEYLTIPIVK-GAMGFGFTIADSSHGQK-----VKKILDR 629
V LE + S + + K ++ G TI+ S + + I
Sbjct: 86 ITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKG 145
Query: 630 Q---RCKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQR 676
R L GD L+ I+N+ + + + VQ+L+ C+ + + +++
Sbjct: 146 SVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLV--KLKIRK 193
Score = 55.2 bits (133), Expect = 1e-08
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 11/93 (11%)
Query: 596 SEYLTIPIVKG-AMGFGFTIA---DSSHGQK----VKKILDRQ---RCKNLAEGDILIEI 644
+E + + GFG + ++ + I RC L GD ++ I
Sbjct: 5 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAI 64
Query: 645 NNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRS 677
N + + E Q+L+D + + ++
Sbjct: 65 NGIPTEDSTFEEANQLLRDSSITSKVTLEIEFD 97
Score = 31.7 bits (72), Expect = 1.0
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 5/89 (5%)
Query: 21 KETPVTLTVPPDGSLNFSVGGGSDSGEFA----YVTNINKEKVKGAEKYLEEKAIILEIQ 76
+ T V LT P + G + E ++ I + L+ ++ I
Sbjct: 6 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAIN 65
Query: 77 GQKVAGYTRRDTIAWLNHCCRSGKTLTLR 105
G T + L + +TL
Sbjct: 66 GIPTEDSTFEEANQLLRDSSITS-KVTLE 93
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB:
3zrt_A 2ka9_A
Length = 196
Score = 162 bits (413), Expect = 6e-46
Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 34/210 (16%)
Query: 920 PYDVTITRRENEGFGFVIIS------SLNKAGSTIGRIIEDSPADRSGELHLGDHILAVN 973
++T+ R N G GF I + I +II A + G L + D IL VN
Sbjct: 6 YEEITL-ERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN 64
Query: 974 HVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSAASHREYEEGGEHDEQY 1033
VD+ + H V +K++G V L + E+
Sbjct: 65 EVDVREVTHSAAVEALKEAGSIVRLYV-----------------------MRRKPPAEKV 101
Query: 1034 HAIELSRGTRGFGFSIRGGREFQNMA----LFVLQIAENGPAALDGHLKVGDEIVEINGI 1089
I+L +G +G GFSI GG Q++ ++V +I E G A DG L++GD+I+ +N +
Sbjct: 102 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSV 161
Query: 1090 NTKNMTHAEAIEIIRNGDSTVRLLIKRGGS 1119
+++ H +A+ ++N V L + + +
Sbjct: 162 GLEDVMHEDAVAALKNTYDVVYLKVAKPSN 191
Score = 154 bits (391), Expect = 5e-43
Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 22/204 (10%)
Query: 818 SDVMVITLLRQENGFGFRIVGGTE-----EGSQVSIGHIVPGGAADLDGRLCTGDEIVSV 872
+ ITL R +G GF I GGT+ + + I I+PGGAA DGRL D I+ V
Sbjct: 4 MEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 63
Query: 873 DNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSMMLGYPYDVTITRRENEG 932
+ + V +H VE + +A V L + R+ P + + L + +G
Sbjct: 64 NEVDVREVTHSAAVEALKEAG--SIVRLYVMRRKPPAEKVMEIKL---------IKGPKG 112
Query: 933 FGFVII------SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIV 986
GF I + +IIE A + G L +GD ILAVN V + + H + V
Sbjct: 113 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAV 172
Query: 987 NLIKDSGYCVTLTIGAPISGDDAS 1010
+K++ V L + P + + +
Sbjct: 173 AALKNTYDVVYLKVAKPSNAETMA 196
Score = 104 bits (261), Expect = 1e-25
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 1030 DEQYHAIELSRGTRGFGFSIRGGRE----FQNMALFVLQIAENGPAALDGHLKVGDEIVE 1085
+Y I L RG G GFSI GG + + ++F+ +I G AA DG L+V D I+
Sbjct: 3 SMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILF 62
Query: 1086 INGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+N ++ + +TH+ A+E ++ S VRL + R
Sbjct: 63 VNEVDVREVTHSAAVEALKEAGSIVRLYVMR 93
Score = 75.2 bits (185), Expect = 2e-15
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 436 RIHSSLVKSLRGLGFTIVGGDDSKEEFLQ----IKSVVPNGPAALEGHLQTGDVLVYVND 491
+ L+K +GLGF+I GG ++ + ++ G A +G LQ GD ++ VN
Sbjct: 101 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 160
Query: 492 KCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
+ H D V+ + + + V L+V +
Sbjct: 161 VGLEDVMHEDAVAALK--NTYDVVYLKVAK 188
Score = 75.2 bits (185), Expect = 2e-15
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQ----IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
L + GLGF+I GG D+ I ++P G AA +G L+ D +++VN+ V
Sbjct: 11 LERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVRE 70
Query: 497 YTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDP 532
TH V + G V+L V R P +
Sbjct: 71 VTHSAAVEALK--EAGSIVRLYVMRRKPPAEKVMEI 104
Score = 74.0 bits (182), Expect = 5e-15
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 11/105 (10%)
Query: 816 EYSDVMVITLLRQENGFGFRIVGGTEEGSQ-----VSIGHIVPGGAADLDGRLCTGDEIV 870
VM I L++ G GF I GG + + I+ GGAA DGRL GD+I+
Sbjct: 97 PAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKIL 156
Query: 871 SVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSM 915
+V+++ + + H V + V L + + P+ +M
Sbjct: 157 AVNSVGLEDVMHEDAVAALKNTY--DVVYLKVAK----PSNAETM 195
Score = 62.8 bits (153), Expect = 3e-11
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 594 SDSEYLTIPIVKGAMGFGFTIA---DSSHGQK-----VKKILDR---QRCKNLAEGDILI 642
EY I + +G G GF+IA D+ H + KI+ + L D ++
Sbjct: 2 GSMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 61
Query: 643 EINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKTP 693
+N ++VR + H V+ LK+ + V R + +K K P
Sbjct: 62 FVNEVDVREVTHSAAVEALKEAGS--IVRLYVMRRKPPAEKVMEIKLIKGP 110
Score = 54.0 bits (130), Expect = 4e-08
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 13/83 (15%)
Query: 605 KGAMGFGFTIA--------DSSHGQKVKKILDRQ---RCKNLAEGDILIEINNLNVRNMC 653
KG G GF+IA + V KI++ + L GD ++ +N++ + ++
Sbjct: 108 KGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVM 167
Query: 654 HGEVVQVLKDCQRNLEANIIVQR 676
H + V LK+ + V +
Sbjct: 168 HEDAVAALKNTYD--VVYLKVAK 188
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 153 bits (388), Expect = 1e-42
Identities = 37/200 (18%), Positives = 70/200 (35%), Gaps = 13/200 (6%)
Query: 818 SDVMVITLLRQENGFGFRIVGG--TEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNL 875
+ ++I L ++ G + GG + I H+ P G D RL D I ++
Sbjct: 17 NKKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGT 76
Query: 876 SVLNSSHHH-VVELMGKASVYGRVTLGIRRKVMPPAETTSMMLGYPYDVTITRRENEGFG 934
+ S V + + VTL + R ++V + ++ + G
Sbjct: 77 PIHVGSMTTLKVHQLFHTTYEKAVTLTVFRA--------DPPELEKFNVDLMKKAGKELG 128
Query: 935 FVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGY 994
+ N+ G TI +I+ + +L GD I N + L L K +
Sbjct: 129 LSLSP--NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANG 186
Query: 995 CVTLTIGAPISGDDASSTTS 1014
V++ + P + +
Sbjct: 187 KVSMEVTRPKPTLRTEAPKA 206
Score = 126 bits (318), Expect = 4e-33
Identities = 28/214 (13%), Positives = 65/214 (30%), Gaps = 31/214 (14%)
Query: 908 PPAETTSMMLGYPYDVTITRRENEGFGFVII---SSLNKAGSTIGRIIEDSPADRSGELH 964
T + + + E + G ++ ++ G I + + L
Sbjct: 7 QEPATAEIKPNKKILIELKV-EKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLK 65
Query: 965 LGDHILAVNHVDI--MSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSAASHRE 1022
+ DHI +N I S+ ++ L TT A +
Sbjct: 66 IFDHICDINGTPIHVGSMTTLKVHQLFH---------------------TTYEKAVTLTV 104
Query: 1023 YEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDE 1082
+ E+++ + + + G S+ + + + +D L+ GD
Sbjct: 105 FRADPPELEKFNVDLMKKAGKELGLSLSPNEI----GCTIADLIQGQYPEIDSKLQRGDI 160
Query: 1083 IVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
I + NG + + + + + V + + R
Sbjct: 161 ITKFNGDALEGLPFQVCYALFKGANGKVSMEVTR 194
Score = 68.8 bits (168), Expect = 3e-13
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 443 KSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
K+ + LG ++ + I ++ ++ LQ GD++ N + G
Sbjct: 122 KAGKELGLSLSPNEIG----CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVC 177
Query: 503 VSVFQSISPGETVQLEVCRGYP 524
++F+ V +EV R P
Sbjct: 178 YALFK--GANGKVSMEVTRPKP 197
Score = 63.0 bits (153), Expect = 3e-11
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Query: 434 GERIHSSLVKSLRGLGFTIVGG-DDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDK 492
++I L + +G + GG ++ I V P G A + L+ D + +N
Sbjct: 17 NKKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGT 76
Query: 493 CVLGYTH-HDMVSVFQSISPGETVQLEVCR 521
+ + V + + V L V R
Sbjct: 77 PIHVGSMTTLKVHQLFHTTYEKAVTLTVFR 106
Score = 58.4 bits (141), Expect = 1e-09
Identities = 22/132 (16%), Positives = 44/132 (33%), Gaps = 9/132 (6%)
Query: 563 TDQSVKSMPDLYTSEKMVKLERPSSTDLILESDSEYLTIPIV----KGAMGFGFTIADSS 618
T V SM L + + T + +D L V K G +++ +
Sbjct: 76 TPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNE 135
Query: 619 HGQKVKKILDRQ---RCKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQ 675
G + ++ Q L GDI+ + N + + + K + ++ V
Sbjct: 136 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANG--KVSMEVT 193
Query: 676 RSRLQHKKTSPP 687
R + + +P
Sbjct: 194 RPKPTLRTEAPK 205
Score = 45.7 bits (108), Expect = 3e-05
Identities = 11/97 (11%), Positives = 29/97 (29%), Gaps = 10/97 (10%)
Query: 595 DSEYLTIPIVKGAMGFGFTIA---DSS--HGQKVKKILDR---QRCKNLAEGDILIEINN 646
++ + I + G + ++ G + + K L D + +IN
Sbjct: 16 PNKKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDING 75
Query: 647 LNVR--NMCHGEVVQVLKDCQRNLEANIIVQRSRLQH 681
+ +M +V Q+ + + +
Sbjct: 76 TPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPEL 112
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 149 bits (379), Expect = 2e-42
Identities = 77/119 (64%), Positives = 97/119 (81%), Gaps = 1/119 (0%)
Query: 424 FFTLNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTG 483
FFT NP EL G+ IH+ L KS RG GFT+VGGD+ +EFLQIKS+V +GPAAL+G ++TG
Sbjct: 7 FFTRNPSELKGKFIHTKLRKSSRGFGFTVVGGDEP-DEFLQIKSLVLDGPAALDGKMETG 65
Query: 484 DVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDPNTEVVTTVAV 542
DV+V VND CVLG+TH +V +FQSI G +V LE+CRGYPLPFDP+DPNT +VT+VA+
Sbjct: 66 DVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDDPNTSLVTSVAI 124
Score = 106 bits (265), Expect = 5e-27
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 1028 EHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEIN 1087
E ++ +L + +RGFGF++ GG E + L + + +GPAALDG ++ GD IV +N
Sbjct: 14 ELKGKFIHTKLRKSSRGFGFTVVGGDE-PDEFLQIKSLVLDGPAALDGKMETGDVIVSVN 72
Query: 1088 GINTKNMTHAEAIEIIRN--GDSTVRLLIKRGGSVVAPTDNAAGIYSSDTSS 1137
THA+ ++I ++ ++V L + RG + P D S TS
Sbjct: 73 DTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPL--PFDPDDPNTSLVTSV 122
Score = 97.9 bits (244), Expect = 4e-24
Identities = 32/97 (32%), Positives = 47/97 (48%)
Query: 818 SDVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSV 877
+ L + GFGF +VGG E + I +V G A LDG++ TGD IVSV++ V
Sbjct: 17 GKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCV 76
Query: 878 LNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTS 914
L +H VV++ + V L + R P +
Sbjct: 77 LGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDD 113
Score = 74.8 bits (184), Expect = 4e-16
Identities = 20/120 (16%), Positives = 47/120 (39%), Gaps = 6/120 (5%)
Query: 581 KLERPSSTDLILESDSEYLTIPIVKGAMGFGFTIA---DSSHGQKVKKILDR---QRCKN 634
+ +P T E +++ + K + GFGFT+ + ++K ++
Sbjct: 2 AMGKPFFTRNPSELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGK 61
Query: 635 LAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKTPT 694
+ GD+++ +N+ V H +VV++ + ++ + R P S +
Sbjct: 62 METGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDDPNTSLVTS 121
Score = 69.4 bits (170), Expect = 4e-14
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 918 GYPYDVTITRRENEGFGFVIIS-SLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVD 976
G + R+ + GFGF ++ I ++ D PA G++ GD I++VN
Sbjct: 17 GKFIHTKL-RKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTC 75
Query: 977 IMSLHHGEIVNLIKD--SGYCVTLTI--GAPISGDDASSTTSVSAAS 1019
++ H ++V + + G V L + G P+ D TS+ +
Sbjct: 76 VLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDDPNTSLVTSV 122
Score = 39.8 bits (93), Expect = 8e-04
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 21 KETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKV 80
K L G F+V GG + EF + ++ + + +E +I+ + V
Sbjct: 18 KFIHTKLRKSSRG-FGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCV 76
Query: 81 AGYTRRDTIAWLNHCCRSGKTLTL 104
G+T + G ++ L
Sbjct: 77 LGHTHAQVVKIFQS-IPIGASVDL 99
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 144 bits (365), Expect = 2e-40
Identities = 61/111 (54%), Positives = 85/111 (76%), Gaps = 1/111 (0%)
Query: 424 FFTLNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTG 483
FT + +L G + ++L KS G GFTI+GGD+ +EFLQ+KSV+P+GPAA +G ++TG
Sbjct: 8 LFTRDASQLKGTFLSTTLKKSNMGFGFTIIGGDEP-DEFLQVKSVIPDGPAAQDGKMETG 66
Query: 484 DVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDPNT 534
DV+VY+N+ CVLG+TH D+V +FQS+ G++V L +CRGYPLPFDP DP
Sbjct: 67 DVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPAN 117
Score = 109 bits (273), Expect = 4e-28
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 1025 EGGEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIV 1084
+ + + + L + GFGF+I GG E + L V + +GPAA DG ++ GD IV
Sbjct: 12 DASQLKGTFLSTTLKKSNMGFGFTIIGGDE-PDEFLQVKSVIPDGPAAQDGKMETGDVIV 70
Query: 1085 EINGINTKNMTHAEAIEIIRNGDS--TVRLLIKRGGSVVAPTDNAAGIYSS 1133
IN + THA+ +++ ++ +V L++ RG + ++ A S
Sbjct: 71 YINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPANSGPS 121
Score = 97.9 bits (244), Expect = 3e-24
Identities = 30/96 (31%), Positives = 47/96 (48%)
Query: 819 DVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVL 878
+ TL + GFGF I+GG E + + ++P G A DG++ TGD IV ++ + VL
Sbjct: 19 TFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVL 78
Query: 879 NSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTS 914
+H VV+L + V L + R P +
Sbjct: 79 GHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPED 114
Score = 68.2 bits (167), Expect = 7e-14
Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 593 ESDSEYLTIPIVKGAMGFGFTIA---DSSHGQKVKKILDR---QRCKNLAEGDILIEINN 646
+ +L+ + K MGFGFTI + +VK ++ + + GD+++ IN
Sbjct: 15 QLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINE 74
Query: 647 LNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKTPT 694
+ V H +VV++ + N+++ R P S +
Sbjct: 75 VCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPANSGPSS 122
Score = 65.5 bits (160), Expect = 6e-13
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 918 GYPYDVTITRRENEGFGFVIIS-SLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVD 976
G T+ ++ N GFGF II + +I D PA + G++ GD I+ +N V
Sbjct: 18 GTFLSTTL-KKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVC 76
Query: 977 IMSLHHGEIVNLIKD--SGYCVTLTI--GAPISGDDASSTTS 1014
++ H ++V L + G V L + G P+ D S
Sbjct: 77 VLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPANS 118
Score = 39.7 bits (93), Expect = 8e-04
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 11 LTAGGTHWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKA 70
T + + TL G F++ GG + EF V ++ + + +E
Sbjct: 9 FTRDASQLKGTFLSTTLKKSNMG-FGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGD 67
Query: 71 IILEIQGQKVAGYTRRDTIAWLNHCCRSGKTLTL 104
+I+ I V G+T D + G+++ L
Sbjct: 68 VIVYINEVCVLGHTHADVVKLFQS-VPIGQSVNL 100
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 132 bits (333), Expect = 4e-36
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 412 STSNRSNNDENYFFTLNPDEL--IGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVV 469
S+ + + +E + + + + I + L GLG ++ +LQI ++
Sbjct: 2 SSGSSGSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVVIQNG----PYLQISHLI 57
Query: 470 PNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGY-PLPFD 528
G AA +G LQ GDVL+ V VLGYT + + + Q+I+ G +Q++ RG+ +P +
Sbjct: 58 NKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFLEIPQE 117
Query: 529 PNDPN 533
D
Sbjct: 118 WQDSG 122
Score = 98.4 bits (245), Expect = 2e-24
Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 6/126 (4%)
Query: 1006 GDDASSTTSVSAASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQI 1065
G SS + + + + +L+ G G G + + L + +
Sbjct: 1 GSSGSSGSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVVIQNGPY----LQISHL 56
Query: 1066 AENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRN--GDSTVRLLIKRGGSVVAP 1123
G AA DG L+ GD ++ + N T E +++++N + +++ RG +
Sbjct: 57 INKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFLEIPQ 116
Query: 1124 TDNAAG 1129
+G
Sbjct: 117 EWQDSG 122
Score = 90.3 bits (224), Expect = 2e-21
Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 816 EYSDVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNL 875
+ V+ L G G ++ G + I H++ GAA DG L GD ++SV +
Sbjct: 24 SLNKVIQTKLTVGNLGLGLVVIQN---GPYLQISHLINKGAAASDGILQPGDVLISVGHA 80
Query: 876 SVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAE 911
+VL + ++L+ ++ + + R + +
Sbjct: 81 NVLGYTLREFLKLLQNITIGTVLQIKAYRGFLEIPQ 116
Score = 73.0 bits (179), Expect = 2e-15
Identities = 17/105 (16%), Positives = 42/105 (40%), Gaps = 7/105 (6%)
Query: 575 TSEKMVKLERPSSTDLILESDSEYLTIPIVKGAMGFGFTIADSSHGQKVKKILDR---QR 631
+EK + +S + ++ + + G +G G + + ++ ++++
Sbjct: 9 KNEKEQLSKAKASVSSL----NKVIQTKLTVGNLGLGLVVIQNGPYLQISHLINKGAAAS 64
Query: 632 CKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQR 676
L GD+LI + + NV E +++L++ I R
Sbjct: 65 DGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYR 109
Score = 69.1 bits (169), Expect = 4e-14
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Query: 904 RKVMPPAETTSMMLGYPYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGEL 963
++ + A+ + L + N G G V+I N I +I A G L
Sbjct: 12 KEQLSKAKASVSSLNKVIQTKL-TVGNLGLGLVVIQ--NGPYLQISHLINKGAAASDGIL 68
Query: 964 HLGDHILAVNHVDIMSLHHGEIVNLIKD--SGYCVTLTI 1000
GD +++V H +++ E + L+++ G + +
Sbjct: 69 QPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKA 107
Score = 28.7 bits (64), Expect = 4.8
Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 16 THWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEI 75
+K LTV G L V G + ++++ + ++ L+ +++ +
Sbjct: 22 VSSLNKVIQTKLTVGNLG-LGLVVIQN---GPYLQISHLINKGAAASDGILQPGDVLISV 77
Query: 76 QGQKVAGYTRRDTIAWLNHCCRSGKTLTL 104
V GYT R+ + L + G L +
Sbjct: 78 GHANVLGYTLREFLKLLQN-ITIGTVLQI 105
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 127 bits (321), Expect = 1e-34
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 1009 ASSTTSVSAASHREYEE-GGEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAE 1067
SS +S A + ++ + + + H IEL + G G S+ G ++ M++FV+ I
Sbjct: 1 GSSGSSGDAFTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINP 60
Query: 1068 NGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRG 1117
GPAA DG +++GDE++EIN +H A II+ S V+L+ R
Sbjct: 61 EGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRN 110
Score = 100 bits (252), Expect = 3e-25
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 412 STSNRSNNDENYFFTLNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPN 471
S+ + + + +L GE L K GLG ++ G D + + + P
Sbjct: 2 SSGSSGDAFTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPE 61
Query: 472 GPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLP 526
GPAA +G ++ GD L+ +N++ + G +H + ++ + + V+L R
Sbjct: 62 GPAAADGRMRIGDELLEINNQILYGRSHQNASAIIK--TAPSKVKLVFIRNEDAV 114
Score = 87.1 bits (216), Expect = 2e-20
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 818 SDVMVITLLRQENGFGFRIVGGTEEGSQ-VSIGHIVPGGAADLDGRLCTGDEIVSVDNLS 876
++ +I L + +NG G + G + + + I P G A DGR+ GDE++ ++N
Sbjct: 24 GELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQI 83
Query: 877 VLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTS 914
+ SH + ++ A +V L R + S
Sbjct: 84 LYGRSHQNASAIIKTAP--SKVKLVFIRNEDAVNQMAS 119
Score = 68.2 bits (167), Expect = 7e-14
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 928 RENEGFGFVII--SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEI 985
++ G G + ++ + I + PA G + +GD +L +N+ + H
Sbjct: 33 KDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNA 92
Query: 986 VNLIKDSGYCVTLTI 1000
+IK + V L
Sbjct: 93 SAIIKTAPSKVKLVF 107
Score = 61.7 bits (150), Expect = 2e-11
Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 16/129 (12%)
Query: 566 SVKSMPDLYTSEKMVKLERPSSTDLILESDSEYLTIPIVKGAMGFGFTIADSSHGQK--- 622
S S D +T +K+ + R + E I + K G G ++A + +
Sbjct: 2 SSGSSGDAFTDQKIRQ--RYAD------LPGELHIIELEKDKNGLGLSLAGNKDRSRMSI 53
Query: 623 -VKKILDR---QRCKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
V I + GD L+EINN + H ++K ++ + ++
Sbjct: 54 FVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKL-VFIRNED 112
Query: 679 LQHKKTSPP 687
++ S P
Sbjct: 113 AVNQMASGP 121
Score = 28.9 bits (65), Expect = 4.5
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 21 KETPVTLTVPPDGSLNFSVGGGSDSGEFA-YVTNINKEKVKGAEKYLEEKAIILEIQGQK 79
+ + L +G L S+ G D + +V IN E A+ + +LEI Q
Sbjct: 25 ELHIIELEKDKNG-LGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQI 83
Query: 80 VAGYTRRDTIAWLNHCCRSGKTLTL 104
+ G + ++ A + + + L
Sbjct: 84 LYGRSHQNASAIIK---TAPSKVKL 105
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 126 bits (318), Expect = 3e-34
Identities = 53/106 (50%), Positives = 73/106 (68%), Gaps = 1/106 (0%)
Query: 1016 SAASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDG 1075
S+ E ++ +EL RG +GFGFS+RGGRE+ NM L+VL++AE+GPA G
Sbjct: 8 SSGVDLGTENLYFQSMDFYTVELERGAKGFGFSLRGGREY-NMDLYVLRLAEDGPAERSG 66
Query: 1076 HLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSVV 1121
+++GDEI+EING TKNM H+ AIE+I+NG VRL +KRG + V
Sbjct: 67 KMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGETSV 112
Score = 97.0 bits (242), Expect = 4e-24
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 818 SDVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSV 877
D + L R GFGF + GG E + + + G A+ G++ GDEI+ ++ +
Sbjct: 23 MDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETT 82
Query: 878 LNSSHHHVVELMGKASVYGRVTLGIRRK 905
N H +EL+ RV L ++R
Sbjct: 83 KNMKHSRAIELIKNGG--RRVRLFLKRG 108
Score = 75.5 bits (186), Expect = 2e-16
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
L + +G GF++ GG + + + + +GPA G ++ GD ++ +N + H
Sbjct: 30 LERGAKGFGFSLRGGREYNMDLY-VLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHS 88
Query: 501 DMVSVFQSISPGETVQLEVCRGYP 524
+ + + + G V+L + RG
Sbjct: 89 RAIELIK--NGGRRVRLFLKRGET 110
Score = 73.5 bits (181), Expect = 9e-16
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 921 YDVTITRRENEGFGFVIISSL-NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
Y V + R +GFGF + + R+ ED PA+RSG++ +GD IL +N +
Sbjct: 26 YTVEL-ERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKN 84
Query: 980 LHHGEIVNLIKDSGYCVTLTI 1000
+ H + LIK+ G V L +
Sbjct: 85 MKHSRAIELIKNGGRRVRLFL 105
Score = 66.6 bits (163), Expect = 2e-13
Identities = 21/100 (21%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 585 PSSTDLILESDSEYLTIPIVKGAMGFGFTIA---DSSHGQKVKKILDR---QRCKNLAEG 638
T+ + ++ T+ + +GA GFGF++ + + V ++ + +R + G
Sbjct: 12 DLGTENLYFQSMDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIG 71
Query: 639 DILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
D ++EIN +NM H ++++K+ R + + ++R
Sbjct: 72 DEILEINGETTKNMKHSRAIELIKNGGRRVR--LFLKRGE 109
Score = 32.3 bits (74), Expect = 0.22
Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 4/103 (3%)
Query: 2 HKRPNKLDNLTAGGTHWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKG 61
H + +D T V L G FS+ GG + YV + ++
Sbjct: 5 HHHSSGVDLGTENLYFQSMDFYTVELERGAKG-FGFSLRGGREYNMDLYVLRLAEDGPAE 63
Query: 62 AEKYLEEKAIILEIQGQKVAGYTRRDTIAWLNHCCRSGKTLTL 104
+ ILEI G+ I + G+ + L
Sbjct: 64 RSGKMRIGDEILEINGETTKNMKHSRAIELIK---NGGRRVRL 103
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 123 bits (310), Expect = 3e-33
Identities = 49/88 (55%), Positives = 71/88 (80%), Gaps = 1/88 (1%)
Query: 1030 DEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGI 1089
D Y +++ +G +GFGFSIRGGRE+ M L+VL++AE+GPA +G ++VGD+I+EING
Sbjct: 9 DFDYFTVDMEKGAKGFGFSIRGGREY-KMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGE 67
Query: 1090 NTKNMTHAEAIEIIRNGDSTVRLLIKRG 1117
+T++MTHA AIE+I++G VRLL+KRG
Sbjct: 68 STRDMTHARAIELIKSGGRRVRLLLKRG 95
Score = 95.5 bits (238), Expect = 1e-23
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 814 SVEYSDVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVD 873
S + D + + + GFGF I GG E + + + G A +GR+ GD+I+ ++
Sbjct: 6 SGQDFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEIN 65
Query: 874 NLSVLNSSHHHVVELMGKASVYGRVTLGIRRKV 906
S + +H +EL+ RV L ++R
Sbjct: 66 GESTRDMTHARAIELIKSGG--RRVRLLLKRGT 96
Score = 78.1 bits (193), Expect = 2e-17
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
+ K +G GF+I GG + K + + + +GPA G ++ GD ++ +N + TH
Sbjct: 17 MEKGAKGFGFSIRGGREYKMDLY-VLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHA 75
Query: 501 DMVSVFQSISPGETVQLEVCRG 522
+ + + S G V+L + RG
Sbjct: 76 RAIELIK--SGGRRVRLLLKRG 95
Score = 73.9 bits (182), Expect = 5e-16
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 921 YDVTITRRENEGFGFVIISSL-NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
+ V + + +GFGF I K + R+ ED PA R+G + +GD I+ +N
Sbjct: 13 FTVDM-EKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRD 71
Query: 980 LHHGEIVNLIKDSGYCVTLTIGAPISGDDAS 1010
+ H + LIK G V L + +S
Sbjct: 72 MTHARAIELIKSGGRRVRLLLKRGTGSGPSS 102
Score = 67.4 bits (165), Expect = 8e-14
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 595 DSEYLTIPIVKGAMGFGFTIA---DSSHGQKVKKILDR---QRCKNLAEGDILIEINNLN 648
D +Y T+ + KGA GFGF+I + V ++ + R + GD +IEIN +
Sbjct: 9 DFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGES 68
Query: 649 VRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
R+M H ++++K R ++++R
Sbjct: 69 TRDMTHARAIELIKSGGR--RVRLLLKRGT 96
Score = 31.1 bits (71), Expect = 0.46
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 12 TAGGTHWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAI 71
++G + V + G FS+ GG + YV + ++ +
Sbjct: 2 SSGSSGQDFDYFTVDMEKGAKG-FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQ 60
Query: 72 ILEIQGQKVAGYTRRDTIAWLNHCCRSGKTLTL 104
I+EI G+ T I + G+ + L
Sbjct: 61 IIEINGESTRDMTHARAIELIKSG---GRRVRL 90
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 122 bits (309), Expect = 4e-33
Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 1028 EHDEQYHAIELSRGTRGFGFSIRGGREF-QNMALFVLQIAENGPAALDGHLKVGDEIVEI 1086
+ ++EL RG GFG ++ GGR+ + L V + ++GPA G L+VGD ++ I
Sbjct: 7 GQASGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHI 66
Query: 1087 NGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
NG +T+ +THA+A+E IR G + L+I+R
Sbjct: 67 NGESTQGLTHAQAVERIRAGGPQLHLVIRR 96
Score = 92.0 bits (229), Expect = 2e-22
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 818 SDVMVITLLRQENGFGFRIVGGTEEGSQVSI--GHIVPGGAADLDGRLCTGDEIVSVDNL 875
S + L+R GFG + GG + + ++ G A GRL GD ++ ++
Sbjct: 10 SGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGE 69
Query: 876 SVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPA 910
S +H VE + ++ L IRR + P+
Sbjct: 70 STQGLTHAQAVERIRAGG--PQLHLVIRRPLSGPS 102
Score = 82.7 bits (205), Expect = 4e-19
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 429 PDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEF-LQIKSVVPNGPAALEGHLQTGDVLV 487
LV+ G G T+ GG D + L ++ ++ +GPA G L+ GD+++
Sbjct: 5 SSGQASGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVL 64
Query: 488 YVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLP 526
++N + G TH V + + G + L + R P
Sbjct: 65 HINGESTQGLTHAQAVERIR--AGGPQLHLVIRRPLSGP 101
Score = 77.3 bits (191), Expect = 3e-17
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 910 AETTSMMLGYPYDVTITRRENEGFGFVIISSLNKAGST---IGRIIEDSPADRSGELHLG 966
+ +S + V + R GFG + + AG T + +++D PA R G L +G
Sbjct: 2 SSGSSGQASGHFSVELVR-GYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVG 60
Query: 967 DHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISG 1006
D +L +N L H + V I+ G + L I P+SG
Sbjct: 61 DLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLSG 100
Score = 65.8 bits (161), Expect = 3e-13
Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 593 ESDSEYLTIPIVKGAMGFGFTIA---DSSH--GQKVKKILDR---QRCKNLAEGDILIEI 644
S + ++ +V+G GFG T+ D + V+ +L QRC L GD+++ I
Sbjct: 7 GQASGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHI 66
Query: 645 NNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
N + + + H + V+ ++ + +++++R
Sbjct: 67 NGESTQGLTHAQAVERIRAGGP--QLHLVIRRPL 98
Score = 30.7 bits (70), Expect = 0.75
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 6/95 (6%)
Query: 12 TAGGTHWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFA--YVTNINKEKVKGAEKYLEEK 69
++G + V L G ++GGG D V + K+ LE
Sbjct: 2 SSGSSGQASGHFSVELVRGYAG-FGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVG 60
Query: 70 AIILEIQGQKVAGYTRRDTIAWLNHCCRSGKTLTL 104
++L I G+ G T + + G L L
Sbjct: 61 DLVLHINGESTQGLTHAQAVERIRAG---GPQLHL 92
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 105
Score = 122 bits (307), Expect = 7e-33
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 1026 GGEHDEQYHAIELSRGTRGFGFSIRGGR-----EFQNMALFVLQIAENGPAALDGHLKVG 1080
G H L+R RG GFSI GG+ + +FV +IAE G A G L+VG
Sbjct: 1 GSSGSSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVG 60
Query: 1081 DEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAPT 1124
D ++ ING++ H A+ ++ T+ LL++R +
Sbjct: 61 DRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAGSGPSS 104
Score = 83.5 bits (207), Expect = 2e-19
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 818 SDVMVITLLRQENGFGFRIVGGTEEGSQVS------IGHIVPGGAADLDGRLCTGDEIVS 871
S V L R E G GF I GG + + I GGAA G L GD ++S
Sbjct: 6 SGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLS 65
Query: 872 VDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAET 912
++ + V + H H V L+ AS + L + R+ +
Sbjct: 66 INGVDVTEARHDHAVSLLTAAS--PTIALLLEREAGSGPSS 104
Score = 79.3 bits (196), Expect = 7e-18
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQ-----IKSVVPNGPAALEGHLQTGDVLVYVNDKCVL 495
L +S RGLGF+I GG S + + G A G LQ GD ++ +N V
Sbjct: 13 LARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVT 72
Query: 496 GYTHHDMVSVFQSISPGETVQLEVCRGYP 524
H VS+ + T+ L + R
Sbjct: 73 EARHDHAVSLLT--AASPTIALLLEREAG 99
Score = 74.3 bits (183), Expect = 4e-16
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 920 PYDVTITRRENEGFGFVII-------SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAV 972
V R G GF I AG + RI E A R+G L +GD +L++
Sbjct: 7 GRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI 66
Query: 973 NHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDAS 1010
N VD+ H V+L+ + + L + +S
Sbjct: 67 NGVDVTEARHDHAVSLLTAASPTIALLLEREAGSGPSS 104
Score = 60.8 bits (148), Expect = 2e-11
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 14/96 (14%)
Query: 593 ESDSEYLTIPIVKGAMGFGFTIA---DSSHGQK------VKKILDR---QRCKNLAEGDI 640
S + + G GF+IA S+ + V +I + R L GD
Sbjct: 3 SGSSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDR 62
Query: 641 LIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQR 676
++ IN ++V H V +L ++++R
Sbjct: 63 VLSINGVDVTEARHDHAVSLLTAASP--TIALLLER 96
Score = 35.4 bits (82), Expect = 0.014
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 10/96 (10%)
Query: 15 GTHWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFA------YVTNINKEKVKGAEKYLEE 68
G+ L G L FS+ GG S + +V+ I + L+
Sbjct: 1 GSSGSSGRHVACLARSERG-LGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQV 59
Query: 69 KAIILEIQGQKVAGYTRRDTIAWLNHCCRSGKTLTL 104
+L I G V ++ L + T+ L
Sbjct: 60 GDRVLSINGVDVTEARHDHAVSLLT---AASPTIAL 92
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 121 bits (306), Expect = 1e-32
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 1030 DEQYHAIELSRGTRGFGFSIRGGRE--FQNMALFVLQIAENGPAALDGHLKVGDEIVEIN 1087
+EL RG G G + G L++ + PAA DG L +GD I+E+N
Sbjct: 6 SGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVN 65
Query: 1088 GINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAPTDNAA 1128
G + + + A+++IR+G +R L+ + A ++
Sbjct: 66 GSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHSG 106
Score = 87.4 bits (217), Expect = 1e-20
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Query: 814 SVEYSDVMVITLLRQENGFGFRIVGGTEEGSQ---VSIGHIVPGGAADLDGRLCTGDEIV 870
S V + L R +G G ++ G + I ++PG A DGRL GD I+
Sbjct: 3 SGSSGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRIL 62
Query: 871 SVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTS 914
V+ S+L + V+L+ ++ + + + A+
Sbjct: 63 EVNGSSLLGLGYLRAVDLIRHGG--KKMRFLVAKSDVETAKKIH 104
Score = 86.2 bits (214), Expect = 3e-20
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 429 PDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQI--KSVVPNGPAALEGHLQTGDVL 486
G L + GLG ++ G + + ++++P PAA +G L GD +
Sbjct: 2 SSGSSGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRI 61
Query: 487 VYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYP 524
+ VN +LG + V + + G+ ++ V +
Sbjct: 62 LEVNGSSLLGLGYLRAVDLIR--HGGKKMRFLVAKSDV 97
Score = 74.7 bits (184), Expect = 3e-16
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
Query: 918 GYPYDVTITRRENEGFGFVII----SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVN 973
GY + V + R G G +I + L G I ++ SPA G L LGD IL VN
Sbjct: 7 GYVFTVEL-ERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVN 65
Query: 974 HVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSAA 1018
++ L + V+LI+ G + + + S+
Sbjct: 66 GSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHSGPSSG 110
Score = 63.9 bits (156), Expect = 2e-12
Identities = 16/103 (15%), Positives = 41/103 (39%), Gaps = 11/103 (10%)
Query: 594 SDSEYLTIPIVKGAMGFGFTIA---DSSHGQK---VKKILDR---QRCKNLAEGDILIEI 644
S T+ + +G G G + + G ++ +L L+ GD ++E+
Sbjct: 5 SSGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEV 64
Query: 645 NNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPP 687
N ++ + + V +++ + + +V +S ++ K
Sbjct: 65 NGSSLLGLGYLRAVDLIRHGGK--KMRFLVAKSDVETAKKIHS 105
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics,
SGC, structural genomics consortium, unknown function;
1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 121 bits (306), Expect = 1e-32
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 1010 SSTTSVSAASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGR--EFQNMALFVLQIAE 1067
S + Q +I L RG G GFSI GG ++ ++V +
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFA 62
Query: 1068 NGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRG 1117
G A+ DG LK GD+I+ +NG + + +TH EA+ I++ TV L++
Sbjct: 63 KGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSS 112
Score = 85.1 bits (211), Expect = 8e-20
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 412 STSNRSNNDENYFFTLNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQI--KSVV 469
+S EN +F P + +L + GLGF+IVGG S L I K+V
Sbjct: 7 HSSGVDLGTENLYFQSMP-----QCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVF 61
Query: 470 PNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYP 524
G A+ +G L+ GD ++ VN + + G TH + V++ + TV L V
Sbjct: 62 AKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILK--RTKGTVTLMVLSSDE 114
Score = 83.9 bits (208), Expect = 2e-19
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 809 PTNIKSVEYSDVMVITLLRQENGFGFRIVGGTEEGSQ---VSIGHIVPGGAADLDGRLCT 865
N+ ITL R +G GF IVGG + + + GAA DGRL
Sbjct: 15 TENLYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKR 74
Query: 866 GDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRR 904
GD+I++V+ S+ +H V ++ + G VTL +
Sbjct: 75 GDQIIAVNGQSLEGVTHEEAVAILKRTK--GTVTLMVLS 111
Score = 72.0 bits (177), Expect = 3e-15
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 908 PPAETTSMMLGYPYDVTIT-RRENEGFGFVII----SSLNKAGSTIGRIIEDSPADRSGE 962
P +IT R +G GF I+ S + + A G
Sbjct: 12 DLGTENLYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGR 71
Query: 963 LHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
L GD I+AVN + + H E V ++K + VTL +
Sbjct: 72 LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 109
Score = 66.6 bits (163), Expect = 3e-13
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Query: 585 PSSTDLILESDSEYLTIPIVKGAMGFGFTIA---DSSHGQK---VKKILDR---QRCKNL 635
+ +L +S + +I + +G G GF+I S HG VK + + L
Sbjct: 13 LGTENLYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRL 72
Query: 636 AEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
GD +I +N ++ + H E V +LK + + ++V S
Sbjct: 73 KRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVT--LMVLSSD 113
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 120 bits (303), Expect = 2e-32
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQ----NMALFVLQIAENGPAALDGHLKVGDEIVEIN 1087
+Y I L RG G GFSI GG + + +F+ +I G AA+DG L V D ++ +N
Sbjct: 4 KYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVN 63
Query: 1088 GINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAPTD 1125
++ + H+ A+E ++ VRL+++R T
Sbjct: 64 EVDVSEVVHSRAVEALKEAGPVVRLVVRRRQPPPEETS 101
Score = 91.6 bits (228), Expect = 3e-22
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 819 DVMVITLLRQENGFGFRIVGGTE-----EGSQVSIGHIVPGGAADLDGRLCTGDEIVSVD 873
I L R +G GF I GG + + + I I+PGGAA +DGRL D ++ V+
Sbjct: 4 KYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVN 63
Query: 874 NLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETT 913
+ V H VE + +A V L +RR+ PP ET+
Sbjct: 64 EVDVSEVVHSRAVEALKEAG--PVVRLVVRRRQPPPEETS 101
Score = 80.8 bits (200), Expect = 2e-18
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 441 LVKSLRGLGFTIVGGDDS----KEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
L + GLGF+I GG D+ + + I ++P G AA++G L D ++ VN+ V
Sbjct: 10 LERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSE 69
Query: 497 YTHHDMVSVFQSISPGETVQLEVCRGYPLPFD 528
H V + G V+L V R P P +
Sbjct: 70 VVHSRAVEALK--EAGPVVRLVVRRRQPPPEE 99
Score = 70.4 bits (173), Expect = 9e-15
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 10/101 (9%)
Query: 921 YDVTITRRENEGFGFVII------SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNH 974
++ + R N G GF I + G I +II A G L + D +L VN
Sbjct: 6 EEIVLER-GNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNE 64
Query: 975 VDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSV 1015
VD+ + H V +K++G V L + TSV
Sbjct: 65 VDVSEVVHSRAVEALKEAGPVVRLVVRRR---QPPPEETSV 102
Score = 63.1 bits (154), Expect = 3e-12
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 597 EYLTIPIVKGAMGFGFTIA---DSSHGQK-----VKKILDR---QRCKNLAEGDILIEIN 645
+Y I + +G G GF+IA D+ H + KI+ L D ++ +N
Sbjct: 4 KYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVN 63
Query: 646 NLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTS 685
++V + H V+ LK+ ++V+R + ++TS
Sbjct: 64 EVDVSEVVHSRAVEALKEAGP--VVRLVVRRRQPPPEETS 101
Score = 28.4 bits (64), Expect = 4.6
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 11/94 (11%)
Query: 16 THWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFA-----YVTNINKEKVKGAEKYLEEKA 70
+ ++ +E + L G L FS+ GG D+ ++T I + L
Sbjct: 1 SMFKYEE--IVLERGNSG-LGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVND 57
Query: 71 IILEIQGQKVAGYTRRDTIAWLNHCCRSGKTLTL 104
+L + V+ + L +G + L
Sbjct: 58 CVLRVNEVDVSEVVHSRAVEALK---EAGPVVRL 88
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling,
trafficking protein; HET: HIS; 1.80A {Rattus norvegicus}
PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 120 bits (302), Expect = 3e-32
Identities = 31/100 (31%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 1031 EQYHAIELSRGTRGFGFSIRGGREFQ----NMALFVLQIAENGPAALDGHLKVGDEIVEI 1086
E+ I+L +G +G GFSI GG Q + +++V +I E G A DG L++GD+++ +
Sbjct: 2 EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 1087 NGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAPTDN 1126
N ++ + +TH EA+ ++N V L + + S+ +
Sbjct: 62 NSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMYISRHH 101
Score = 82.4 bits (204), Expect = 5e-19
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 433 IGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQ----IKSVVPNGPAALEGHLQTGDVLVY 488
+ + + L+K +GLGF+I GG ++ + ++ G A +G LQ GD L+
Sbjct: 1 MEKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLA 60
Query: 489 VNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDP 529
VN + TH + V+ ++ + V L+V + +
Sbjct: 61 VNSVSLEEVTHEEAVTALKNT--SDFVYLKVAKPTSMYISR 99
Score = 82.4 bits (204), Expect = 5e-19
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 820 VMVITLLRQENGFGFRIVGGTEEGSQVS-----IGHIVPGGAADLDGRLCTGDEIVSVDN 874
+M I L++ G GF I GG + I+ GGAA DG+L GD++++V++
Sbjct: 4 IMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNS 63
Query: 875 LSVLNSSHHHVVELMGKASVYGRVTLGIRRKV 906
+S+ +H V + S V L + +
Sbjct: 64 VSLEEVTHEEAVTALKNTS--DFVYLKVAKPT 93
Score = 67.8 bits (166), Expect = 8e-14
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 921 YDVTITRRENEGFGFVII------SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNH 974
++ + + +G GF I + +IIE A + G+L +GD +LAVN
Sbjct: 5 MEIKLIK-GPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNS 63
Query: 975 VDIMSLHHGEIVNLIKDSGYCVTLTIGAPISG 1006
V + + H E V +K++ V L + P S
Sbjct: 64 VSLEEVTHEEAVTALKNTSDFVYLKVAKPTSM 95
Score = 60.1 bits (146), Expect = 4e-11
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 597 EYLTIPIVKGAMGFGFTIA---DSSHGQK-----VKKILDR---QRCKNLAEGDILIEIN 645
+ + I ++KG G GF+IA + H V KI++ + L GD L+ +N
Sbjct: 3 KIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN 62
Query: 646 NLNVRNMCHGEVVQVLKDCQRNLEANIIVQR 676
++++ + H E V LK+ + V +
Sbjct: 63 SVSLEEVTHEEAVTALKNTSD--FVYLKVAK 91
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 120 bits (303), Expect = 3e-32
Identities = 35/96 (36%), Positives = 56/96 (58%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
Q IE+S+G G G SI GG++ A+ + ++ E G AA DG L GD+I+E+NG++
Sbjct: 17 QEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDL 76
Query: 1092 KNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAPTDNA 1127
+N +H EAI +R VRL++ R + ++
Sbjct: 77 RNSSHEEAITALRQTPQKVRLVVYRDEAHYRDEESG 112
Score = 86.3 bits (214), Expect = 3e-20
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 434 GERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKC 493
G+ + + K GLG +IVGG D+ + I V G AA +G L GD ++ VN
Sbjct: 16 GQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVD 75
Query: 494 VLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDPNT 534
+ +H + ++ + + V+L V R D +
Sbjct: 76 LRNSSHEEAITALR--QTPQKVRLVVYRDEAHYRDEESGPS 114
Score = 86.3 bits (214), Expect = 3e-20
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 818 SDVMVITLLRQENGFGFRIVGGTEEGSQ-VSIGHIVPGGAADLDGRLCTGDEIVSVDNLS 876
M+I + + +G G IVGG + + I + GAA DGRL GD+I+ V+ +
Sbjct: 16 GQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVD 75
Query: 877 VLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTS 914
+ NSSH + + + +V L + R + S
Sbjct: 76 LRNSSHEEAITALRQTP--QKVRLVVYRDEAHYRDEES 111
Score = 74.7 bits (184), Expect = 3e-16
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 5/111 (4%)
Query: 908 PPAETTSMMLGYPYDVTITRRENEGFGFVII--SSLNKAGSTIGRIIEDSPADRSGELHL 965
T ++ G + I + G G I+ I + E+ A R G L
Sbjct: 6 SGPATCPIVPGQEMIIEI-SKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWA 64
Query: 966 GDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI--GAPISGDDASSTTS 1014
GD IL VN VD+ + H E + ++ + V L + D+ S +S
Sbjct: 65 GDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYRDEESGPSS 115
Score = 58.2 bits (141), Expect = 3e-10
Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 595 DSEYLTIPIVKGAMGFGFTIA---DSSH-GQKVKKILDR---QRCKNLAEGDILIEINNL 647
+ + I I KG G G +I D+ + ++ + R L GD ++E+N +
Sbjct: 15 PGQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGV 74
Query: 648 NVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPP 687
++RN H E + L+ + + ++V R ++
Sbjct: 75 DLRNSSHEEAITALRQTPQ--KVRLVVYRDEAHYRDEESG 112
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 120 bits (302), Expect = 3e-32
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 426 TLNPDELIGERIHSSLVKSLRGLGFTIVGGDDSK--EEFLQIKSVVPNGPAALEGHLQTG 483
++ + +G+R++ L K GLGF+I D + + +K+++P G A +G L+ G
Sbjct: 2 SVYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAG 61
Query: 484 DVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDPN 533
D L+ VN + G + ++VS+ +S TV L V R F P + N
Sbjct: 62 DRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEE-AFHPREMN 110
Score = 103 bits (258), Expect = 3e-26
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 1028 EHDEQYHAIELSRGTRGFGFSIRGGRE--FQNMALFVLQIAENGPAALDGHLKVGDEIVE 1085
+ + I+L +GT G GFSI + ++V I G A DG LK GD ++E
Sbjct: 7 KKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIE 66
Query: 1086 INGINTKNMTHAEAIEIIRN--GDSTVRLLIKRGGSVVAPTD 1125
+NG++ + E + ++R+ + TV LL+ R P +
Sbjct: 67 VNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAFHPRE 108
Score = 94.3 bits (235), Expect = 4e-23
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 819 DVMVITLLRQENGFGFRIVGGTEEGSQ---VSIGHIVPGGAADLDGRLCTGDEIVSVDNL 875
+ I L + G GF I + + +I+P GAA DGRL GD ++ V+ +
Sbjct: 11 KRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGV 70
Query: 876 SVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAE 911
+ S VV L+ + G V+L + R+
Sbjct: 71 DLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAFHP 106
Score = 68.1 bits (167), Expect = 5e-14
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 918 GYPYDVTITRRENEGFGFVII----SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVN 973
G ++ + ++ EG GF I + A + I+ A + G L GD ++ VN
Sbjct: 10 GKRLNIQL-KKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVN 68
Query: 974 HVDIMSLHHGEIVNLIKDSGY--CVTLTIG 1001
VD+ E+V+L++ + V+L +
Sbjct: 69 GVDLAGKSQEEVVSLLRSTKMEGTVSLLVF 98
Score = 65.4 bits (160), Expect = 6e-13
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 593 ESDSEYLTIPIVKGAMGFGFTIA---DSSHGQK---VKKILDR---QRCKNLAEGDILIE 643
+ + L I + KG G GF+I + G VK IL R + L GD LIE
Sbjct: 7 KKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIE 66
Query: 644 INNLNVRNMCHGEVVQVLKDCQRNLEANIIVQR 676
+N +++ EVV +L+ + +++V R
Sbjct: 67 VNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFR 99
Score = 29.2 bits (66), Expect = 2.4
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 15 GTHWQDKETPVTLTVPPDGSLNFSVGGGSDSG---EFAYVTNINKEKVKGAEKYLEEKAI 71
T K + L +G L FS+ + YV NI + L+
Sbjct: 5 NTKKVGKRLNIQLKKGTEG-LGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDR 63
Query: 72 ILEIQGQKVAGYTRRDTIAWLNHCCRSGK-TLTLR 105
++E+ G +AG ++ + ++ L G +L +
Sbjct: 64 LIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVF 98
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 119 bits (300), Expect = 4e-32
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 1030 DEQYHAIELSRGTRGFGFSIRGGRE--FQNMALFVLQIAENGPAALDGHLKVGDEIVEIN 1087
+EL++ G S+ GG ++ ++V + G A DG + GD ++ +N
Sbjct: 3 PGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVN 62
Query: 1088 GINTKNMTHAEAIEIIRNGDSTVRLLIKRG 1117
G++ + TH +A+E +RN V LL+++G
Sbjct: 63 GVSLEGATHKQAVETLRNTGQVVHLLLEKG 92
Score = 89.9 bits (224), Expect = 9e-22
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 818 SDVMVITLLRQENGFGFRIVGGTEEGSQVS---IGHIVPGGAADLDGRLCTGDEIVSVDN 874
D+ + L + +N G + GG + + ++P GAA+ DGR+ GD +++V+
Sbjct: 4 GDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNG 63
Query: 875 LSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMP 908
+S+ ++H VE + V L + + P
Sbjct: 64 VSLEGATHKQAVETLRNTG--QVVHLLLEKGQSP 95
Score = 88.8 bits (221), Expect = 3e-21
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 434 GERIHSSLVKSLRGLGFTIVGGDDSKEEFLQI--KSVVPNGPAALEGHLQTGDVLVYVND 491
G+ L K+ LG ++ GG ++ I K+V+P G A +G + GD ++ VN
Sbjct: 4 GDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNG 63
Query: 492 KCVLGYTHHDMVSVFQSISPGETVQLEVCRGYP 524
+ G TH V + + G+ V L + +G
Sbjct: 64 VSLEGATHKQAVETLR--NTGQVVHLLLEKGQS 94
Score = 72.2 bits (178), Expect = 1e-15
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 921 YDVTITRRENEGFGFVII----SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVD 976
++V + + + G + +S+ G + +I A+ G +H GD +LAVN V
Sbjct: 7 FEVELAK-NDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVS 65
Query: 977 IMSLHHGEIVNLIKDSGYCVTLTIG 1001
+ H + V ++++G V L +
Sbjct: 66 LEGATHKQAVETLRNTGQVVHLLLE 90
Score = 62.2 bits (152), Expect = 4e-12
Identities = 11/93 (11%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 595 DSEYLTIPIVKGAMGFGFTIA---DSSHGQK---VKKILDR---QRCKNLAEGDILIEIN 645
+ + + K G ++ ++S VK ++ + + + +GD ++ +N
Sbjct: 3 PGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVN 62
Query: 646 NLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
+++ H + V+ L++ + + ++++++ +
Sbjct: 63 GVSLEGATHKQAVETLRNTGQVV--HLLLEKGQ 93
Score = 27.9 bits (63), Expect = 5.8
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 32 DGSLNFSVGGGSDSGEFA---YVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGYTRRDT 88
D SL SV GG ++ YV + + ++ + + +L + G + G T +
Sbjct: 15 DNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQA 74
Query: 89 IAWLNHCCRSGKTLTL 104
+ L +G+ + L
Sbjct: 75 VETLR---NTGQVVHL 87
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 118 bits (299), Expect = 5e-32
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 1036 IELSRGTRGFGFSIRGGREFQ----NMALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
+ L +G +G GFSI GG Q + ++++ +I E G A DG L++GD ++ +N N
Sbjct: 7 VNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 66
Query: 1092 KNMTHAEAIEIIRNGDSTVRLLIKRGGS 1119
+++ H EA+ ++N V L + + GS
Sbjct: 67 QDVRHEEAVASLKNTSDMVYLKVAKPGS 94
Score = 84.3 bits (209), Expect = 7e-20
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 819 DVMVITLLRQENGFGFRIVGGTE-----EGSQVSIGHIVPGGAADLDGRLCTGDEIVSVD 873
+M + LL+ G GF I GG + + I I+ GGAA DGRL GD +++V+
Sbjct: 3 TIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVN 62
Query: 874 NLSVLNSSHHHVVELMGKASVYGRVTLGIRR 904
N ++ + H V + S V L + +
Sbjct: 63 NTNLQDVRHEEAVASLKNTS--DMVYLKVAK 91
Score = 80.4 bits (199), Expect = 2e-18
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQ----IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
L+K +GLGF+I GG ++ I ++ G A +G LQ GD L+ VN+ +
Sbjct: 9 LLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQD 68
Query: 497 YTHHDMVSVFQSISPGETVQLEVCR 521
H + V+ ++ + V L+V +
Sbjct: 69 VRHEEAVASLKNT--SDMVYLKVAK 91
Score = 69.6 bits (171), Expect = 1e-14
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 921 YDVTITRRENEGFGFVII------SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNH 974
+V + + +G GF I I +IIE A + G L +GD +LAVN+
Sbjct: 5 MEVNLLK-GPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNN 63
Query: 975 VDIMSLHHGEIVNLIKDSGYCVTLTIGAPIS 1005
++ + H E V +K++ V L + P S
Sbjct: 64 TNLQDVRHEEAVASLKNTSDMVYLKVAKPGS 94
Score = 60.4 bits (147), Expect = 2e-11
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 597 EYLTIPIVKGAMGFGFTIA---DSSHGQK-----VKKILDR---QRCKNLAEGDILIEIN 645
+ + ++KG G GF+IA + H + KI++ Q+ L GD L+ +N
Sbjct: 3 TIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVN 62
Query: 646 NLNVRNMCHGEVVQVLKDCQRNLEANIIVQR 676
N N++++ H E V LK+ + V +
Sbjct: 63 NTNLQDVRHEEAVASLKNTSD--MVYLKVAK 91
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics,
structural genomics consortium, SGC; 1.50A {Homo sapiens}
Length = 98
Score = 119 bits (300), Expect = 5e-32
Identities = 35/90 (38%), Positives = 51/90 (56%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
IE+S+G G G SI GG + A+ + ++ E G A DG L GD+I+E+NGI+ + T
Sbjct: 8 IEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKAT 67
Query: 1096 HAEAIEIIRNGDSTVRLLIKRGGSVVAPTD 1125
H EAI ++R VRL + R + T
Sbjct: 68 HDEAINVLRQTPQRVRLTLYRDEAPYKSTR 97
Score = 87.7 bits (218), Expect = 6e-21
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 821 MVITLLRQENGFGFRIVGGTEEGSQ-VSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLN 879
I + + G G IVGG++ + I + GAA DGRL GD+I+ V+ + +
Sbjct: 6 TTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRK 65
Query: 880 SSHHHVVELMGKASVYGRVTLGIRRKVMPPAET 912
++H + ++ + RV L + R P T
Sbjct: 66 ATHDEAINVLRQTP--QRVRLTLYRDEAPYKST 96
Score = 84.7 bits (210), Expect = 6e-20
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 433 IGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDK 492
+G + K GLG +IVGG D+ + I V G A +G L GD ++ VN
Sbjct: 2 MGCETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGI 61
Query: 493 CVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPND 531
+ TH + ++V + + V+L + R P+
Sbjct: 62 DLRKATHDEAINVLR--QTPQRVRLTLYRD-EAPYKSTR 97
Score = 71.9 bits (177), Expect = 2e-15
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 917 LGYPYDVTITRRENEGFGFVII--SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNH 974
+G + I++ G G I+ S I + E+ A + G L GD IL VN
Sbjct: 2 MGCETTIEISK-GRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNG 60
Query: 975 VDIMSLHHGEIVNLIKDSGYCVTLTIG 1001
+D+ H E +N+++ + V LT+
Sbjct: 61 IDLRKATHDEAINVLRQTPQRVRLTLY 87
Score = 59.2 bits (144), Expect = 5e-11
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 594 SDSEYLTIPIVKGAMGFGFTIA---DSSHGQ-KVKKILDR---QRCKNLAEGDILIEINN 646
S TI I KG G G +I D+ G + ++ + + L GD ++E+N
Sbjct: 1 SMGCETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNG 60
Query: 647 LNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKT 684
+++R H E + VL+ + + + R +K T
Sbjct: 61 IDLRKATHDEAINVLRQTPQ--RVRLTLYRDEAPYKST 96
Score = 28.0 bits (63), Expect = 4.7
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Query: 21 KETPVTLTVPPDGSLNFSVGGGSDSGEFA-YVTNINKEKVKGAEKYLEEKAIILEIQGQK 79
ET + ++ G L S+ GGSD+ A + + +E + L ILE+ G
Sbjct: 4 CETTIEISKGRTG-LGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGID 62
Query: 80 VAGYTRRDTIAWLNHCCRSGKTLTLRTVSSAYVTTDL 116
+ T + I L + LTL + Y +T L
Sbjct: 63 LRKATHDEAINVLRQTPQR-VRLTLYRDEAPYKSTRL 98
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 118 bits (299), Expect = 6e-32
Identities = 26/86 (30%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
+EL + G GF+I GG+E QN +++ ++ G A G LK GD+++ +NG++
Sbjct: 5 SSGVVELPKTDEGLGFNIMGGKE-QNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 63
Query: 1092 KNMTHAEAIEIIRNGDSTVRLLIKRG 1117
+ H +A+E+++ +V+L+++ G
Sbjct: 64 EGEQHEKAVELLKAAQGSVKLVVRSG 89
Score = 100 bits (250), Expect = 3e-25
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 818 SDVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSV 877
V+ L + + G GF I+GG E+ S + I ++PGG AD G L GD+++SV+ +SV
Sbjct: 4 GSSGVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 63
Query: 878 LNSSHHHVVELMGKASVYGRVTLGIRRK 905
H VEL+ A G V L +R
Sbjct: 64 EGEQHEKAVELLKAAQ--GSVKLVVRSG 89
Score = 81.5 bits (202), Expect = 8e-19
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 434 GERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKC 493
G L K+ GLGF I+GG + I V+P G A G L+ GD L+ VN
Sbjct: 4 GSSGVVELPKTDEGLGFNIMGGKEQNSPIY-ISRVIPGGVADRHGGLKRGDQLLSVNGVS 62
Query: 494 VLGYTHHDMVSVFQSISPGETVQLEVCRG 522
V G H V + + + +V+L V G
Sbjct: 63 VEGEQHEKAVELLK--AAQGSVKLVVRSG 89
Score = 75.4 bits (186), Expect = 1e-16
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 918 GYPYDVTITRRENEGFGFVIISSL-NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVD 976
G V + + +EG GF I+ + I R+I ADR G L GD +L+VN V
Sbjct: 4 GSSGVVEL-PKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVS 62
Query: 977 IMSLHHGEIVNLIKDSGYCVTLTI 1000
+ H + V L+K + V L +
Sbjct: 63 VEGEQHEKAVELLKAAQGSVKLVV 86
Score = 64.2 bits (157), Expect = 9e-13
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 594 SDSEYLTIPIVKGAMGFGFTIA---DSSHGQKVKKILDR---QRCKNLAEGDILIEINNL 647
S + + K G GF I + + + +++ R L GD L+ +N +
Sbjct: 2 SSGSSGVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGV 61
Query: 648 NVRNMCHGEVVQVLKDCQRNLEANIIVQR 676
+V H + V++LK Q ++V+
Sbjct: 62 SVEGEQHEKAVELLKAAQG--SVKLVVRS 88
Score = 29.9 bits (68), Expect = 1.0
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 21 KETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKV 80
V L +G L F++ GG + Y++ + V L+ +L + G V
Sbjct: 5 SSGVVELPKTDEG-LGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 63
Query: 81 AGYTRRDTIAWLNHCCRSGKTLTL 104
G + L + ++ L
Sbjct: 64 EGEQHEKAVELLK---AAQGSVKL 84
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 119 bits (300), Expect = 6e-32
Identities = 41/95 (43%), Positives = 60/95 (63%)
Query: 818 SDVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSV 877
+ + L R E+GFGFRI+GG E G + IG ++ G+AD DGRL GDE+V VD + V
Sbjct: 8 YKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPV 67
Query: 878 LNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAET 912
+H +V++LM A+ G+V L +RRKV+ +
Sbjct: 68 AGKTHRYVIDLMHHAARNGQVNLTVRRKVLSGPSS 102
Score = 107 bits (268), Expect = 1e-27
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 1026 GGEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVE 1085
G + + L R GFGF I GG E + + + G A DG L GDE+V
Sbjct: 3 SGSSGYKELDVHLRRMESGFGFRILGGDE-PGQPILIGAVIAMGSADRDGRLHPGDELVY 61
Query: 1086 INGINTKNMTHAEAIEIIRNG--DSTVRLLIKR 1116
++GI TH I+++ + + V L ++R
Sbjct: 62 VDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRR 94
Score = 92.4 bits (230), Expect = 2e-22
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 435 ERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCV 494
+ + L + G GF I+GGD+ + L I +V+ G A +G L GD LVYV+ V
Sbjct: 9 KELDVHLRRMESGFGFRILGGDEPGQPIL-IGAVIAMGSADRDGRLHPGDELVYVDGIPV 67
Query: 495 LGYTHHDMVSVFQSISPGETVQLEVCRGYP 524
G TH ++ + + V L V R
Sbjct: 68 AGKTHRYVIDLMHHAARNGQVNLTVRRKVL 97
Score = 68.9 bits (169), Expect = 2e-14
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 594 SDSEYLTIPIVKGAMGFGFTIA---DSSHGQKVKKILDRQ---RCKNLAEGDILIEINNL 647
S + L + + + GFGF I + + ++ R L GD L+ ++ +
Sbjct: 6 SGYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGI 65
Query: 648 NVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKT 684
V H V+ ++ RN + N+ V+R L +
Sbjct: 66 PVAGKTHRYVIDLMHHAARNGQVNLTVRRKVLSGPSS 102
Score = 67.3 bits (165), Expect = 8e-14
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 921 YDVTITRRENEGFGFVIISSLN-KAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
DV + RR GFGF I+ IG +I ADR G LH GD ++ V+ + +
Sbjct: 11 LDVHL-RRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAG 69
Query: 980 LHHGEIVNLIKDSGYCVTLTI 1000
H +++L+ + + +
Sbjct: 70 KTHRYVIDLMHHAARNGQVNL 90
Score = 34.2 bits (79), Expect = 0.043
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 21 KETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKV 80
KE V L + F + GG + G+ + + + L ++ + G V
Sbjct: 9 KELDVHL-RRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPV 67
Query: 81 AGYTRRDTIAWLNHCCRSGK-TLTLR 105
AG T R I ++H R+G+ LT+R
Sbjct: 68 AGKTHRYVIDLMHHAARNGQVNLTVR 93
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular
binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A*
2laz_A*
Length = 90
Score = 118 bits (297), Expect = 9e-32
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 293 LGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRLCKFQKKLEDCSDDELPYGWERIDDP 352
LP +E+ T++G+VYF+ + S+W DPR+ + + LP GWE +
Sbjct: 7 PPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRNTA 66
Query: 353 AYGTYYIDHVNKQTQYENPVLQA 375
Y++DH N+ TQ+ +P L A
Sbjct: 67 TGRVYFVDHNNRTTQFTDPRLSA 89
Score = 47.2 bits (112), Expect = 9e-07
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 338 SDDELPYGWERIDDPAYGTYYIDHVNKQTQYENP 371
S +LP G+E+ Y++ + + +P
Sbjct: 6 SPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDP 39
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 118 bits (298), Expect = 1e-31
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 1028 EHDEQYHAIELSRGTRGFGFSIRGGREFQ----NMALFVLQIAENGPAALDGHLKVGDEI 1083
++ I L+RG G GF+I GG + Q + ++V +I ENG AALDG L+ GD+I
Sbjct: 3 DYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKI 62
Query: 1084 VEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+ +NG + KN+ H +A+++ RN V L ++
Sbjct: 63 LSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQH 95
Score = 83.5 bits (207), Expect = 2e-19
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 814 SVEYS-DVMVITLLRQENGFGFRIVGGTEEGSQVS-----IGHIVPGGAADLDGRLCTGD 867
S++Y I L R +G GF IVGGT++ + + I GAA LDGRL GD
Sbjct: 1 SMDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGD 60
Query: 868 EIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKV 906
+I+SV+ + N H V+L A V+L ++ ++
Sbjct: 61 KILSVNGQDLKNLLHQDAVDLFRNAG--YAVSLRVQHRL 97
Score = 80.1 bits (198), Expect = 3e-18
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQ----IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
L + GLGF IVGG D + + + NG AAL+G LQ GD ++ VN + +
Sbjct: 13 LTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKN 72
Query: 497 YTHHDMVSVFQSISPGETVQLEVCRGYP 524
H D V +F+ + G V L V
Sbjct: 73 LLHQDAVDLFR--NAGYAVSLRVQHRLE 98
Score = 70.4 bits (173), Expect = 8e-15
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 920 PYDVTITRRENEGFGFVII------SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVN 973
++ +TR G GF I+ N +G + RI E+ A G L GD IL+VN
Sbjct: 8 EEEINLTR-GPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVN 66
Query: 974 HVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
D+ +L H + V+L +++GY V+L +
Sbjct: 67 GQDLKNLLHQDAVDLFRNAGYAVSLRV 93
Score = 61.6 bits (150), Expect = 8e-12
Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 13/98 (13%)
Query: 592 LESDSEYLTIPIVKGAMGFGFTIA---DSSHGQK-----VKKILDR---QRCKNLAEGDI 640
++ I + +G G GF I D + V +I + L EGD
Sbjct: 2 MDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDK 61
Query: 641 LIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
++ +N +++N+ H + V + ++ ++ VQ
Sbjct: 62 ILSVNGQDLKNLLHQDAVDLFRNAGY--AVSLRVQHRL 97
Score = 29.6 bits (67), Expect = 1.8
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 21 KETPVTLTVPPDGSLNFSVGGGSDSGEFA-----YVTNINKEKVKGAEKYLEEKAIILEI 75
E + LT P G L F++ GG+D + YV+ I + + L+E IL +
Sbjct: 7 TEEEINLTRGPSG-LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 65
Query: 76 QGQKVAGYTRRDTIAWLNHCCRSGKTLTL 104
GQ + +D + +G ++L
Sbjct: 66 NGQDLKNLLHQDAVDLFR---NAGYAVSL 91
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein
25, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 119 bits (299), Expect = 1e-31
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 11/112 (9%)
Query: 1009 ASSTTSVSAASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQ----NMALFVLQ 1064
SS +S ++ I L+RG G GF+I GG + Q + ++V +
Sbjct: 1 GSSGSSGMNGRV-------DYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSR 53
Query: 1065 IAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
I ENG AALDG L+ GD+I+ +NG + KN+ H +A+++ RN V L ++
Sbjct: 54 IKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQH 105
Score = 86.0 bits (213), Expect = 5e-20
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 819 DVMVITLLRQENGFGFRIVGGTEEGSQVS-----IGHIVPGGAADLDGRLCTGDEIVSVD 873
I L R +G GF IVGGT++ + + I GAA LDGRL GD+I+SV+
Sbjct: 17 TEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVN 76
Query: 874 NLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTS 914
+ N H V+L A V+L ++ ++ S
Sbjct: 77 GQDLKNLLHQDAVDLFRNAG--YAVSLRVQHRLQVQNGPIS 115
Score = 82.5 bits (204), Expect = 8e-19
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 428 NPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQ----IKSVVPNGPAALEGHLQTG 483
+ + +L + GLGF IVGG D + + + NG AAL+G LQ G
Sbjct: 10 GRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEG 69
Query: 484 DVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDPNT 534
D ++ VN + + H D V +F+ + G V L V + P +
Sbjct: 70 DKILSVNGQDLKNLLHQDAVDLFR--NAGYAVSLRVQHRLQVQNGPISGPS 118
Score = 70.9 bits (174), Expect = 9e-15
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 908 PPAETTSMMLGYPYDVTITRRENEGFGFVII------SSLNKAGSTIGRIIEDSPADRSG 961
L ++ +TR G GF I+ N +G + RI E+ A G
Sbjct: 6 SGMNGRVDYLVTEEEINLTR-GPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDG 64
Query: 962 ELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSA 1017
L GD IL+VN D+ +L H + V+L +++GY V+L + + + + S
Sbjct: 65 RLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPISGPSSG 120
Score = 64.8 bits (158), Expect = 1e-12
Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 14/115 (12%)
Query: 585 PSSTDLILESDSEYLTIPIVKGAMGFGFTIA---DSSHGQK-----VKKILDR---QRCK 633
S + ++ I + +G G GF I D + V +I +
Sbjct: 5 SSGMNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDG 64
Query: 634 NLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR-LQHKKTSPP 687
L EGD ++ +N +++N+ H + V + ++ ++ VQ +Q+ S P
Sbjct: 65 RLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGY--AVSLRVQHRLQVQNGPISGP 117
Score = 31.3 bits (71), Expect = 0.60
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 12 TAGGTHWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFA-----YVTNINKEKVKGAEKYL 66
G + E + LT P G L F++ GG+D + YV+ I + + L
Sbjct: 8 MNGRVDYLVTEEEINLTRGPSG-LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRL 66
Query: 67 EEKAIILEIQGQKVAGYTRRDTIAWLNHCCRSGKTLTL 104
+E IL + GQ + +D + +G ++L
Sbjct: 67 QEGDKILSVNGQDLKNLLHQDAVDLFR---NAGYAVSL 101
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 118 bits (298), Expect = 1e-31
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 1010 SSTTSVSAASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQ----NMALFVLQI 1065
++ V + Y + I+L +G +G GFSI GG Q + +++V +I
Sbjct: 6 HHSSGVDLGTENLYFQ----SMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKI 61
Query: 1066 AENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSV 1120
+ G A DG L+VGD ++ +N + + +TH EA+ I++N V L + + ++
Sbjct: 62 IDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTI 116
Score = 83.2 bits (206), Expect = 4e-19
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 816 EYSDVMVITLLRQENGFGFRIVGGTEEGSQVS-----IGHIVPGGAADLDGRLCTGDEIV 870
+ V+ I L + G GF I GG + I+ GGAA DGRL GD ++
Sbjct: 21 QSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLL 80
Query: 871 SVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKV 906
V+N S+ +H V ++ S V L + +
Sbjct: 81 MVNNYSLEEVTHEEAVAILKNTS--EVVYLKVGKPT 114
Score = 81.3 bits (201), Expect = 2e-18
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 414 SNRSNNDENYFFTLNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQ----IKSVV 469
+ ++ T N + L K +GLGF+I GG ++ + ++
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKII 62
Query: 470 PNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPL 525
G A +G LQ GD L+ VN+ + TH + V++ ++ E V L+V + +
Sbjct: 63 DGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNT--SEVVYLKVGKPTTI 116
Score = 65.5 bits (160), Expect = 6e-13
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 921 YDVTITRRENEGFGFVII------SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNH 974
++ + + +G GF I + +II+ A + G L +GD +L VN+
Sbjct: 26 VEIKL-FKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNN 84
Query: 975 VDIMSLHHGEIVNLIKDSGYCVTLTIGAPIS 1005
+ + H E V ++K++ V L +G P +
Sbjct: 85 YSLEEVTHEEAVAILKNTSEVVYLKVGKPTT 115
Score = 64.7 bits (158), Expect = 1e-12
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 13/108 (12%)
Query: 585 PSSTDLILESDSEYLTIPIVKGAMGFGFTIA---DSSHGQK-----VKKILDR---QRCK 633
T+ + + I + KG G GF+IA + H V KI+D Q+
Sbjct: 12 DLGTENLYFQSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDG 71
Query: 634 NLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQH 681
L GD L+ +NN ++ + H E V +LK+ + V + +
Sbjct: 72 RLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSE--VVYLKVGKPTTIY 117
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 116 bits (293), Expect = 3e-31
Identities = 47/88 (53%), Positives = 59/88 (67%)
Query: 818 SDVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSV 877
S I L R+E GFGFRI+GG E G + IGHIVP GAAD DGRL +GDE++SVD V
Sbjct: 1 SMEQDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPV 60
Query: 878 LNSSHHHVVELMGKASVYGRVTLGIRRK 905
+ SH VV+LM +A+ G V L +R+
Sbjct: 61 IGKSHQLVVQLMQQAAKQGHVNLTVRQT 88
Score = 107 bits (270), Expect = 5e-28
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
I L R GFGF I GG E +++ I G A DG L+ GDE++ ++G
Sbjct: 2 MEQDIFLWRKETGFGFRILGGNE-PGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPV 60
Query: 1092 KNMTHAEAIEIIRNG--DSTVRLLIKR 1116
+H +++++ V L +++
Sbjct: 61 IGKSHQLVVQLMQQAAKQGHVNLTVRQ 87
Score = 91.9 bits (229), Expect = 2e-22
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
L + G GF I+GG++ E I +VP G A +G L++GD L+ V+ V+G +H
Sbjct: 8 LWRKETGFGFRILGGNEPGEPIY-IGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQ 66
Query: 501 DMVSVFQSISPGETVQLEVCR 521
+V + Q + V L V +
Sbjct: 67 LVVQLMQQAAKQGHVNLTVRQ 87
Score = 69.2 bits (170), Expect = 1e-14
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 922 DVTITRRENEGFGFVIIS-SLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSL 980
D+ + R+ GFGF I+ + IG I+ AD G L GD +++V+ ++
Sbjct: 5 DIFL-WRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGK 63
Query: 981 HHGEIVNLIKDSGY--CVTLTI 1000
H +V L++ + V LT+
Sbjct: 64 SHQLVVQLMQQAAKQGHVNLTV 85
Score = 67.7 bits (166), Expect = 5e-14
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 596 SEYLTIPIVKGAMGFGFTIA---DSSHGQKVKKILDRQ---RCKNLAEGDILIEINNLNV 649
S I + + GFGF I + + I+ L GD LI ++ V
Sbjct: 1 SMEQDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPV 60
Query: 650 RNMCHGEVVQVLKDCQRNLEANIIVQRSRL 679
H VVQ+++ + N+ V+++RL
Sbjct: 61 IGKSHQLVVQLMQQAAKQGHVNLTVRQTRL 90
Score = 36.1 bits (84), Expect = 0.006
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 22 ETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVA 81
E + L G F + GG++ GE Y+ +I + L ++ + G V
Sbjct: 3 EQDIFLWRKETG-FGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVI 61
Query: 82 GYTRRDTIAWLNHCCRSGK-TLTLR 105
G + + + + + G LT+R
Sbjct: 62 GKSHQLVVQLMQQAAKQGHVNLTVR 86
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium, synaptosome,
tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 116 bits (293), Expect = 5e-31
Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGR---EFQNMALFVLQIAENGPAALDGHLKVGDEIVEING 1088
+ +EL++ +G G +I G + + +FV I ++ DG +++GD+I+ ++G
Sbjct: 4 ETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDG 63
Query: 1089 INTKNMTHAEAIEIIRNGDSTVRLLIKRGG 1118
N + T+ +A+E++R+ TV L + R G
Sbjct: 64 TNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 93
Score = 85.8 bits (213), Expect = 3e-20
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 818 SDVMVITLLRQENGFGFRIVGGTEEGSQVSIG----HIVPGGAADLDGRLCTGDEIVSVD 873
S+ + L + G G I G + G I A + DGR+ GD+I++VD
Sbjct: 3 SETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVD 62
Query: 874 NLSVLNSSHHHVVELMGKASVYGRVTLGIRRK 905
++ ++ VE++ V L + R+
Sbjct: 63 GTNLQGFTNQQAVEVLRHTG--QTVLLTLMRR 92
Score = 85.8 bits (213), Expect = 3e-20
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 433 IGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQ---IKSVVPNGPAALEGHLQTGDVLVYV 489
+ E L K+++GLG TI G K+ +KS+ + +G +Q GD ++ V
Sbjct: 2 MSETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAV 61
Query: 490 NDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYP 524
+ + G+T+ V V + G+TV L + R
Sbjct: 62 DGTNLQGFTNQQAVEVLR--HTGQTVLLTLMRRGE 94
Score = 72.3 bits (178), Expect = 2e-15
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 921 YDVTITRRENEGFGFVII-----SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHV 975
+DV +T+ +G G I L +G + I + S + G + +GD I+AV+
Sbjct: 6 FDVELTK-NVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGT 64
Query: 976 DIMSLHHGEIVNLIKDSGYCVTLTIGAP 1003
++ + + V +++ +G V LT+
Sbjct: 65 NLQGFTNQQAVEVLRHTGQTVLLTLMRR 92
Score = 62.3 bits (152), Expect = 5e-12
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 594 SDSEYLTIPIVKGAMGFGFTIA---DSSHGQK----VKKILDR---QRCKNLAEGDILIE 643
S SE + + K G G TIA + VK I + + GD +I
Sbjct: 1 SMSETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIA 60
Query: 644 INNLNVRNMCHGEVVQVLKDC 664
++ N++ + + V+VL+
Sbjct: 61 VDGTNLQGFTNQQAVEVLRHT 81
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 115 bits (291), Expect = 5e-31
Identities = 53/85 (62%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
Query: 437 IHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
IH+ L KS RG GFT+VGGD+ +EFLQIKS+V +GPAAL+G ++TGDV+V VND CVLG
Sbjct: 2 IHTKLRKSSRGFGFTVVGGDEP-DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLG 60
Query: 497 YTHHDMVSVFQSISPGETVQLEVCR 521
+TH +V +FQSI G +V LE+CR
Sbjct: 61 HTHAQVVKIFQSIPIGASVDLELCR 85
Score = 105 bits (263), Expect = 3e-27
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+L + +RGFGF++ GG E + L + + +GPAALDG ++ GD IV +N T
Sbjct: 4 TKLRKSSRGFGFTVVGGDE-PDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHT 62
Query: 1096 HAEAIEIIRN--GDSTVRLLIKR 1116
HA+ ++I ++ ++V L + R
Sbjct: 63 HAQVVKIFQSIPIGASVDLELCR 85
Score = 100 bits (251), Expect = 1e-25
Identities = 31/82 (37%), Positives = 44/82 (53%)
Query: 823 ITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSH 882
L + GFGF +VGG E + I +V G A LDG++ TGD IVSV++ VL +H
Sbjct: 4 TKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH 63
Query: 883 HHVVELMGKASVYGRVTLGIRR 904
VV++ + V L + R
Sbjct: 64 AQVVKIFQSIPIGASVDLELCR 85
Score = 66.5 bits (163), Expect = 1e-13
Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 599 LTIPIVKGAMGFGFTIA---DSSHGQKVKKILDR---QRCKNLAEGDILIEINNLNVRNM 652
+ + K + GFGFT+ + ++K ++ + GD+++ +N+ V
Sbjct: 2 IHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGH 61
Query: 653 CHGEVVQVLKDCQRNLEANIIVQR 676
H +VV++ + ++ + R
Sbjct: 62 THAQVVKIFQSIPIGASVDLELCR 85
Score = 64.2 bits (157), Expect = 7e-13
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 922 DVTITRRENEGFGFVIIS-SLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSL 980
+ + + GFGF ++ I ++ D PA G++ GD I++VN ++
Sbjct: 3 HTKLRK-SSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGH 61
Query: 981 HHGEIVNLIKD--SGYCVTLTI 1000
H ++V + + G V L +
Sbjct: 62 THAQVVKIFQSIPIGASVDLEL 83
Score = 39.2 bits (92), Expect = 4e-04
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGYT 84
L G F+V GG + EF + ++ + + +E +I+ + V G+T
Sbjct: 4 TKLRKSSRG-FGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHT 62
Query: 85 RRDTIAWLNHCCRSGKTLTLR 105
+ G ++ L
Sbjct: 63 HAQVVKIFQS-IPIGASVDLE 82
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 116 bits (293), Expect = 6e-31
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 6/98 (6%)
Query: 1025 EGGEHDEQYHAIELSRGTRGFGFSIRGGRE-----FQNMALFVLQIAENGPAALDGHLKV 1079
E +E+ + + R T G G SI GG+ + +F+ +++E GPAA G ++V
Sbjct: 8 EPARIEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRV 66
Query: 1080 GDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRG 1117
GD+++E+NG+ + H EA+E +R + V++ + R
Sbjct: 67 GDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE 104
Score = 82.0 bits (203), Expect = 7e-19
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 818 SDVMVITLLRQENGFGFRIVGGTEEGSQVS------IGHIVPGGAADLDGRLCTGDEIVS 871
+ + +T+LRQ G G I GG I + G A G + GD+++
Sbjct: 14 EEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLE 72
Query: 872 VDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPA 910
V+ +++ + HH VE + A V + + R+ P +
Sbjct: 73 VNGVALQGAEHHEAVEALRGAG--TAVQMRVWRESGPSS 109
Score = 77.4 bits (191), Expect = 4e-17
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 429 PDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQ-----IKSVVPNGPAALEGHLQTG 483
P + E + ++++ GLG +I GG S I V GPAA G ++ G
Sbjct: 9 PARIEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVG 67
Query: 484 DVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYP 524
D L+ VN + G HH+ V + G VQ+ V R
Sbjct: 68 DKLLEVNGVALQGAEHHEAVEALR--GAGTAVQMRVWRESG 106
Score = 68.1 bits (167), Expect = 6e-14
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 920 PYDVTITRRENEGFGFVII-------SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAV 972
+TI R+ G G I + G I R+ E+ PA R+G + +GD +L V
Sbjct: 16 ELTLTI-LRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 73
Query: 973 NHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
N V + H E V ++ +G V + +
Sbjct: 74 NGVALQGAEHHEAVEALRGAGTAVQMRV 101
Score = 59.3 bits (144), Expect = 8e-11
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 15/108 (13%)
Query: 585 PSSTDLILESDSEYLTIPIVKGAMGFGFTIA---------DSSHGQKVKKILDR---QRC 632
S+ + E LT+ I++ G G +IA G + ++ + R
Sbjct: 3 SGSSGEPARIEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA 62
Query: 633 KNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQ 680
+ GD L+E+N + ++ H E V+ L+ + V R
Sbjct: 63 G-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGT--AVQMRVWRESGP 107
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ
domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 116 bits (293), Expect = 1e-30
Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Query: 1008 DASSTTSVSAASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGRE--FQNMALFVLQI 1065
++S+ ++ SA++ + + + L + + G GFS+ GG+ + L + +I
Sbjct: 5 NSSTDSAASASAASDVSVESTAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRI 64
Query: 1066 AENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRN-GDSTVRLLIKRGGSVVAPT 1124
+ + ++ GDEI+++ G + +T EA II+ D V ++I+R T
Sbjct: 65 FKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSKET 124
Query: 1125 DNAA 1128
A
Sbjct: 125 TAAG 128
Score = 97.6 bits (243), Expect = 6e-24
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 809 PTNIKSVEYSDVMVITLLRQENGFGFRIVGG---TEEGSQVSIGHIVPGGAADLDGRLCT 865
+++S + V +TL + G GF + GG ++I I G A++ +
Sbjct: 19 DVSVESTAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQP 78
Query: 866 GDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTS 914
GDEI+ + ++ + ++ KA G VT+ IRRK + ETT+
Sbjct: 79 GDEILQLGGTAMQGLTRFEAWNII-KALPDGPVTIVIRRKSLQSKETTA 126
Score = 85.2 bits (211), Expect = 1e-19
Identities = 20/131 (15%), Positives = 46/131 (35%), Gaps = 7/131 (5%)
Query: 404 PQARNTLVSTSNRSNNDENYFFTLNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFL 463
P ++ S ++ S + + +L K GLGF++ GG S
Sbjct: 2 PDLNSSTDSAASASAASDVSVESTAE----ATVCTVTLEKMSAGLGFSLEGGKGSLHGDK 57
Query: 464 QI--KSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
+ + + +Q GD ++ + + G T + ++ +++ G V + + R
Sbjct: 58 PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDG-PVTIVIRR 116
Query: 522 GYPLPFDPNDP 532
+
Sbjct: 117 KSLQSKETTAA 127
Score = 70.2 bits (172), Expect = 2e-14
Identities = 27/131 (20%), Positives = 57/131 (43%), Gaps = 11/131 (8%)
Query: 570 MPDLYTSEKMVKLERPSSTDLILESDS-EYLTIPIVKGAMGFGFTIA---DSSHGQK--- 622
MPDL +S +S + + T+ + K + G GF++ S HG K
Sbjct: 1 MPDLNSSTDSAASASAASDVSVESTAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLT 60
Query: 623 VKKILDR---QRCKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRL 679
+ +I ++ + + GD ++++ ++ + E ++K + I+++R L
Sbjct: 61 INRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL-PDGPVTIVIRRKSL 119
Query: 680 QHKKTSPPFRS 690
Q K+T+ S
Sbjct: 120 QSKETTAAGDS 130
Score = 66.4 bits (162), Expect = 4e-13
Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 6/117 (5%)
Query: 905 KVMPPAETTSMMLGYPYDVTITRRENEGFGFVII----SSLNKAGSTIGRIIEDSPADRS 960
S VT+ + + G GF + S TI RI + + +++S
Sbjct: 15 SAASDVSVESTAEATVCTVTL-EKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQS 73
Query: 961 GELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGY-CVTLTIGAPISGDDASSTTSVS 1016
+ GD IL + + L E N+IK VT+ I ++ S
Sbjct: 74 ETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSKETTAAGDS 130
Score = 28.6 bits (64), Expect = 5.6
Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 4/104 (3%)
Query: 5 PNKLDNLTAGGTHWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFA---YVTNINKEKVKG 61
+ + + + VTL G L FS+ GG S + I K
Sbjct: 13 SASAASDVSVESTAEATVCTVTLEKMSAG-LGFSLEGGKGSLHGDKPLTINRIFKGAASE 71
Query: 62 AEKYLEEKAIILEIQGQKVAGYTRRDTIAWLNHCCRSGKTLTLR 105
+ ++ IL++ G + G TR + + T+ +R
Sbjct: 72 QSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIR 115
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 116 bits (292), Expect = 1e-30
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 407 RNTLVSTSNRSNNDENYFFTLNPDELIGERIHSSLVKSLRGLGFTIVGGDDSK--EEFLQ 464
R + + ++ YF + IG+R++ L K GLGF+I D + +
Sbjct: 2 RGSHHHHHHHHGSENLYFQGSYNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIY 61
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
+K+++P G A +G L+ GD L+ VN ++G + ++VS+ +S TV L V R
Sbjct: 62 VKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFR 118
Score = 99.0 bits (247), Expect = 1e-24
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 1036 IELSRGTRGFGFSIRGGRE--FQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKN 1093
I+L +GT G GFSI + ++V I G A DG LK GD ++E+NG++
Sbjct: 34 IQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVG 93
Query: 1094 MTHAEAIEIIRN--GDSTVRLLIKR 1116
+ E + ++R+ + TV LL+ R
Sbjct: 94 KSQEEVVSLLRSTKMEGTVSLLVFR 118
Score = 92.8 bits (231), Expect = 2e-22
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 7/118 (5%)
Query: 791 SNDMRYIPPDNLGLPRVRPTNIKSVEYSDVMVITLLRQENGFGFRIVGGTEEGSQ---VS 847
+ + +NL T + + I L + G GF I +
Sbjct: 6 HHHHHHHGSENLYFQGSYNTK----KIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIY 61
Query: 848 IGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRK 905
+ +I+P GAA DGRL GD ++ V+ + ++ S VV L+ + G V+L + R+
Sbjct: 62 VKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119
Score = 66.7 bits (163), Expect = 2e-13
Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 903 RRKVMPPAETTSMMLGYPYDVTITRRENEGFGFVII----SSLNKAGSTIGRIIEDSPAD 958
+ + +G ++ + ++ EG GF I + A + I+ A
Sbjct: 14 SENLYFQGSYNTKKIGKRLNIQL-KKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAI 72
Query: 959 RSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGY--CVTLTIG 1001
+ G L GD ++ VN VD++ E+V+L++ + V+L +
Sbjct: 73 QDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVF 117
Score = 65.9 bits (161), Expect = 4e-13
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 585 PSSTDLILESDSEYLTIPIVKGAMGFGFTIA---DSSHGQK---VKKILDR---QRCKNL 635
+ + L I + KG G GF+I + G VK IL R + L
Sbjct: 18 YFQGSYNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRL 77
Query: 636 AEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
GD LIE+N +++ EVV +L+ + +++V R
Sbjct: 78 KAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQE 120
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 114 bits (287), Expect = 2e-30
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGRE-----FQNMALFVLQIAENGPAALDGHLKVGDEIVEI 1086
+ + + R T G G SI GG+ + +F+ +++E GPAA G ++VGD+++E+
Sbjct: 3 EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 61
Query: 1087 NGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSV 1120
NG+ + H EA+E +R + V++ + R
Sbjct: 62 NGVALQGAEHHEAVEALRGAGTAVQMRVWRERET 95
Score = 79.2 bits (196), Expect = 6e-18
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 819 DVMVITLLRQENGFGFRIVGGTEEGSQVS------IGHIVPGGAADLDGRLCTGDEIVSV 872
+ + +T+LRQ G G I GG I + G A G + GD+++ V
Sbjct: 3 EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 61
Query: 873 DNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPP 909
+ +++ + HH VE + A V + + R+
Sbjct: 62 NGVALQGAEHHEAVEALRGAG--TAVQMRVWRERETS 96
Score = 74.2 bits (183), Expect = 3e-16
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 435 ERIHSSLVKSLRGLGFTIVGGDDSKEEFLQ-----IKSVVPNGPAALEGHLQTGDVLVYV 489
E + ++++ GLG +I GG S I V GPAA G ++ GD L+ V
Sbjct: 3 EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 61
Query: 490 NDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLP 526
N + G HH+ V + G VQ+ V R
Sbjct: 62 NGVALQGAEHHEAVEALR--GAGTAVQMRVWRERETS 96
Score = 68.8 bits (169), Expect = 3e-14
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 920 PYDVTITRRENEGFGFVII-------SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAV 972
+TI R+ G G I + G I R+ E+ PA R+G + +GD +L V
Sbjct: 4 ELTLTI-LRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 61
Query: 973 NHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
N V + H E V ++ +G V + +
Sbjct: 62 NGVALQGAEHHEAVEALRGAGTAVQMRV 89
Score = 60.8 bits (148), Expect = 1e-11
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 15/94 (15%)
Query: 597 EYLTIPIVKGAMGFGFTIA---DSSHGQK------VKKILDR---QRCKNLAEGDILIEI 644
E LT+ I++ G G +IA S+ + + ++ + R + GD L+E+
Sbjct: 3 EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 61
Query: 645 NNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
N + ++ H E V+ L+ + V R R
Sbjct: 62 NGVALQGAEHHEAVEALRGAGT--AVQMRVWRER 93
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 114 bits (288), Expect = 3e-30
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 1018 ASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHL 1077
S G + I L +G+ G GF+I GG + +FV I GPA L G L
Sbjct: 1 GSSGSSGRPGGDAREPRKIILHKGSTGLGFNIVGGED--GEGIFVSFILAGGPADLSGEL 58
Query: 1078 KVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+ GD I+ +NG+N +N TH +A ++ +V ++ +
Sbjct: 59 RRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQY 97
Score = 87.0 bits (216), Expect = 2e-20
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 814 SVEYSDVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVD 873
+ + I L + G GF IVGG E+G + + I+ GG ADL G L GD I+SV+
Sbjct: 10 GGDAREPRKIILHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVN 68
Query: 874 NLSVLNSSHHHVVELMGKASVYGRVTLGIRRK 905
+++ N++H + +A VT+ + +
Sbjct: 69 GVNLRNATHEQAAAALKRAG--QSVTIVAQYR 98
Score = 79.3 bits (196), Expect = 9e-18
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
P + + + + G GF I+ + G + I+ PAD SGEL GD IL+VN V++ +
Sbjct: 16 PRKIIL-HKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 74
Query: 980 LHHGEIVNLIKDSGYCVTLTI 1000
H + +K +G VT+
Sbjct: 75 ATHEQAAAALKRAGQSVTIVA 95
Score = 77.8 bits (192), Expect = 3e-17
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 429 PDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVY 488
P E L K GLGF IVGG+D + F + ++ GPA L G L+ GD ++
Sbjct: 9 PGGDAREPRKIILHKGSTGLGFNIVGGEDGEGIF--VSFILAGGPADLSGELRRGDRILS 66
Query: 489 VNDKCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
VN + TH + + G++V +
Sbjct: 67 VNGVNLRNATHEQAAAALK--RAGQSVTIVAQY 97
Score = 63.9 bits (156), Expect = 2e-12
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
Query: 585 PSSTDLILESDSEYLTIPIVKGAMGFGFTIA--DSSHGQKVKKILDR---QRCKNLAEGD 639
S+ E I + KG+ G GF I + G V IL L GD
Sbjct: 3 SGSSGRPGGDAREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGD 62
Query: 640 ILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPP 687
++ +N +N+RN H + LK + I+ Q ++ +
Sbjct: 63 RILSVNGVNLRNATHEQAAAALKRAGQ--SVTIVAQYRPEEYSRFESS 108
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 107
Score = 114 bits (287), Expect = 3e-30
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 1027 GEHDEQYHAIELSRGTRGFGFSIRGGRE-----FQNMALFVLQIAENGPAALDGHLKVGD 1081
G + +EL + G G SI G + + +FV + E G A DG ++V D
Sbjct: 4 GSSGLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVND 63
Query: 1082 EIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+IVE++GI+ +T A ++RN VR +I R
Sbjct: 64 QIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGR 98
Score = 83.9 bits (208), Expect = 2e-19
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 819 DVMVITLLRQENGFGFRIVGGT------EEGSQVSIGHIVPGGAADLDGRLCTGDEIVSV 872
++ + L + E+G G I+G E + + + GGAA DGR+ D+IV V
Sbjct: 9 ELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEV 68
Query: 873 DNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAET 912
D +S++ + + ++ G V I R+ +
Sbjct: 69 DGISLVGVTQNFAATVLRNTK--GNVRFVIGREKPSGPSS 106
Score = 82.0 bits (203), Expect = 9e-19
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 434 GERIHSSLVKSLRGLGFTIVGGDDSKEEFLQ-----IKSVVPNGPAALEGHLQTGDVLVY 488
E L K GLG +I+G + L+ +K+V G A +G +Q D +V
Sbjct: 8 LELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVE 67
Query: 489 VNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYP 524
V+ ++G T + +V ++ V+ + R P
Sbjct: 68 VDGISLVGVTQNFAATVLRNT--KGNVRFVIGREKP 101
Score = 70.1 bits (172), Expect = 1e-14
Identities = 19/97 (19%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 921 YDVTITRRENEGFGFVII-------SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVN 973
+ V + ++ +G G II + L K G + + E A R G + + D I+ V+
Sbjct: 11 FPVEL-EKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVD 69
Query: 974 HVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDAS 1010
+ ++ + +++++ V IG +S
Sbjct: 70 GISLVGVTQNFAATVLRNTKGNVRFVIGREKPSGPSS 106
Score = 57.0 bits (138), Expect = 4e-10
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 12/83 (14%)
Query: 594 SDSEYLTIPIVKGAMGFGFTIADSSHGQK---------VKKILDR---QRCKNLAEGDIL 641
S E + + K G G +I G VK + + QR + D +
Sbjct: 6 SGLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQI 65
Query: 642 IEINNLNVRNMCHGEVVQVLKDC 664
+E++ +++ + VL++
Sbjct: 66 VEVDGISLVGVTQNFAATVLRNT 88
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic
reticulum, postsynaptic membrane, membrane, MEMB protein;
1.5A {Homo sapiens}
Length = 97
Score = 113 bits (286), Expect = 4e-30
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 1036 IELSRGTRGFGFSIRGGREFQ---NMALFVLQIAENGPAALDGHLKVGDEIVEINGINTK 1092
+ L + FGF IRGG + + + + GPA +G +K GD ++ ++GI
Sbjct: 7 VTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLL 66
Query: 1093 NMTHAEAIEIIRNGDSTVRLLIKRGGS 1119
THAEA+ I++ LLI+ S
Sbjct: 67 GTTHAEAMSILKQCGQEAALLIEYDVS 93
Score = 91.5 bits (228), Expect = 2e-22
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 818 SDVMVITLLRQENGFGFRIVGGT----EEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVD 873
+ +TL ++ N FGF I GG + V I + PGG AD +G + GD ++SVD
Sbjct: 2 MRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVD 61
Query: 874 NLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPA 910
+ +L ++H + ++ + L I V A
Sbjct: 62 GIRLLGTTHAEAMSILKQCG--QEAALLIEYDVSETA 96
Score = 81.9 bits (203), Expect = 6e-19
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 923 VTIT-RRENEGFGFVII-----SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVD 976
V +T +E FGFVI I + PADR G + GD +L+V+ +
Sbjct: 5 VEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIR 64
Query: 977 IMSLHHGEIVNLIKDSGYCVTLTIGAPIS 1005
++ H E ++++K G L I +S
Sbjct: 65 LLGTTHAEAMSILKQCGQEAALLIEYDVS 93
Score = 78.0 bits (193), Expect = 1e-17
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 435 ERIHSSLVKSLRGLGFTIVGGDDSKEEF---LQIKSVVPNGPAALEGHLQTGDVLVYVND 491
+ +L K GF I GG + I SV P GPA EG ++ GD L+ V+
Sbjct: 3 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDG 62
Query: 492 KCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
+LG TH + +S+ + G+ L +
Sbjct: 63 IRLLGTTHAEAMSILK--QCGQEAALLIEY 90
Score = 61.1 bits (149), Expect = 1e-11
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 596 SEYLTIPIVKGAMGFGFTIA---DSSHGQK----VKKILDRQ---RCKNLAEGDILIEIN 645
+ + + K FGF I + + + R + GD L+ ++
Sbjct: 2 MRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVD 61
Query: 646 NLNVRNMCHGEVVQVLKDCQRNLEANIIVQR 676
+ + H E + +LK C + EA ++++
Sbjct: 62 GIRLLGTTHAEAMSILKQCGQ--EAALLIEY 90
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 114 bits (286), Expect = 4e-30
Identities = 40/98 (40%), Positives = 57/98 (58%)
Query: 597 EYLTIPIVKGAMGFGFTIADSSHGQKVKKILDRQRCKNLAEGDILIEINNLNVRNMCHGE 656
+TIP++KG GFGF IADS GQKVK ILD Q C+ L +GDI+ EI + NV+N+ H +
Sbjct: 12 LLVTIPLIKGPKGFGFAIADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLTHLQ 71
Query: 657 VVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKTPT 694
VV+VLK + +++ R + S +
Sbjct: 72 VVEVLKQFPVGADVPLLILRGGPPSPTKTAKMGSGSGQ 109
Score = 81.4 bits (201), Expect = 1e-18
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
I L +G +GFGF+I Q ++ + L+ GD I EI N
Sbjct: 12 LLVTIPLIKGPKGFGFAIADSPTGQ-------KVKMILDSQWCQGLQKGDIIKEIYHQNV 64
Query: 1092 KNMTHAEAIEIIRN--GDSTVRLLIKRGGSVVAPTDNAAGIYSSDTS 1136
+N+TH + +E+++ + V LLI RGG G S +
Sbjct: 65 QNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKMGSGSGQIT 111
Score = 73.7 bits (181), Expect = 8e-16
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 434 GERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKC 493
G + L+K +G GF I + ++K ++ + LQ GD++ + +
Sbjct: 11 GLLVTIPLIKGPKGFGFAIADSPTGQ----KVKMILDSQWC---QGLQKGDIIKEIYHQN 63
Query: 494 VLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDP 532
V TH +V V + G V L + RG P
Sbjct: 64 VQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAK 102
Score = 65.6 bits (160), Expect = 5e-13
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 819 DVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVL 878
++ I L++ GFGF I + I+ + L GD I + + +V
Sbjct: 12 LLVTIPLIKGPKGFGFAIADSPTGQK---VKMILD---SQWCQGLQKGDIIKEIYHQNVQ 65
Query: 879 NSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSMM 916
N +H VVE++ + V V L I R P T+ M
Sbjct: 66 NLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKM 103
Score = 55.2 bits (133), Expect = 2e-09
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 923 VTIT-RRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
VTI + +GFGF I T ++ + L GD I + H ++ +L
Sbjct: 14 VTIPLIKGPKGFGFAI-----ADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLT 68
Query: 982 HGEIVNLIKD--SGYCVTLTI 1000
H ++V ++K G V L I
Sbjct: 69 HLQVVEVLKQFPVGADVPLLI 89
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 114 bits (287), Expect = 4e-30
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 1027 GEHDEQYHAIELSRGTRGFGFSIRGGRE-----FQNMALFVLQIAENGPAALDGHLKVGD 1081
G + +EL + + G G SI G + + +FV + E G A DG ++V D
Sbjct: 1 GHME--LFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVND 58
Query: 1082 EIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+VE++G + +T + A ++RN VR +I R
Sbjct: 59 LLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR 93
Score = 84.4 bits (209), Expect = 1e-19
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 819 DVMVITLLRQENGFGFRIVGGTEEGSQVS------IGHIVPGGAADLDGRLCTGDEIVSV 872
++ + L + G G I+G + + GGAA DGR+ D +V V
Sbjct: 4 ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 63
Query: 873 DNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAE 911
D S++ + ++ GRV I R+
Sbjct: 64 DGTSLVGVTQSFAASVLRNTK--GRVRFMIGRERPGEQS 100
Score = 83.2 bits (206), Expect = 4e-19
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 435 ERIHSSLVKSLRGLGFTIVGGDDSKEEFLQ-----IKSVVPNGPAALEGHLQTGDVLVYV 489
E L K GLG +I+G + L+ +K+V G A +G +Q D+LV V
Sbjct: 4 ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 63
Query: 490 NDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLP 526
+ ++G T SV ++ V+ + R P
Sbjct: 64 DGTSLVGVTQSFAASVLRNT--KGRVRFMIGRERPGE 98
Score = 70.1 bits (172), Expect = 1e-14
Identities = 20/109 (18%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 921 YDVTITRRENEGFGFVII-------SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVN 973
+ V + +++EG G II L K G + + E A R G + + D ++ V+
Sbjct: 6 FPVEL-EKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVD 64
Query: 974 HVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSAASHRE 1022
++ + ++++++ V IG G+ + + +E
Sbjct: 65 GTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVAQLIQQTLEQE 113
Score = 57.0 bits (138), Expect = 5e-10
Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 14/98 (14%)
Query: 597 EYLTIPIVKGAMGFGFTIADSSHGQK---------VKKILDR---QRCKNLAEGDILIEI 644
E + + K + G G +I G VK + + R + D+L+E+
Sbjct: 4 ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 63
Query: 645 NNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHK 682
+ ++ + VL++ + ++ R R +
Sbjct: 64 DGTSLVGVTQSFAASVLRNTKG--RVRFMIGRERPGEQ 99
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing,
cell junction, cell membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 113 bits (286), Expect = 5e-30
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 1030 DEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGI 1089
+ I + RG+ G GF+I GG +F+ I GPA L G L+ GD+I+ +NG+
Sbjct: 9 PREPRRIVIHRGSTGLGFNIVGGEX--GEGIFISFILAGGPADLSGELRKGDQILSVNGV 66
Query: 1090 NTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+ +N +H +A ++N TV ++ +
Sbjct: 67 DLRNASHEQAAIALKNAGQTVTIIAQY 93
Score = 87.7 bits (218), Expect = 6e-21
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 819 DVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVL 878
+ I + R G GF IVGG E G + I I+ GG ADL G L GD+I+SV+ + +
Sbjct: 11 EPRRIVIHRGSTGLGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR 69
Query: 879 NSSHHHVVELMGKASVYGRVTLGIRRK 905
N+SH + A VT+ + K
Sbjct: 70 NASHEQAAIALKNAG--QTVTIIAQYK 94
Score = 80.0 bits (198), Expect = 4e-18
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Query: 900 LGIRRKVMPPAETTSMMLGYPYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADR 959
+G+ + +P P + I R + G GF I+ G I I+ PAD
Sbjct: 1 MGLGEEDIPRE---------PRRIVI-HRGSTGLGFNIVGGEXGEGIFISFILAGGPADL 50
Query: 960 SGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
SGEL GD IL+VN VD+ + H + +K++G VT+
Sbjct: 51 SGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIA 91
Score = 77.7 bits (192), Expect = 3e-17
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 426 TLNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDV 485
L +++ E + + GLGF IVGG+ + F I ++ GPA L G L+ GD
Sbjct: 2 GLGEEDIPREPRRIVIHRGSTGLGFNIVGGEXGEGIF--ISFILAGGPADLSGELRKGDQ 59
Query: 486 LVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
++ VN + +H + + G+TV +
Sbjct: 60 ILSVNGVDLRNASHEQAAIALK--NAGQTVTIIAQY 93
Score = 63.5 bits (155), Expect = 2e-12
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 593 ESDSEYLTIPIVKGAMGFGFTIA--DSSHGQKVKKILDR---QRCKNLAEGDILIEINNL 647
+ E I I +G+ G GF I + G + IL L +GD ++ +N +
Sbjct: 7 DIPREPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGV 66
Query: 648 NVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
++RN H + LK+ + II Q
Sbjct: 67 DLRNASHEQAAIALKNAGQ--TVTIIAQYKP 95
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 114 bits (286), Expect = 5e-30
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
+EL G GF I GG+ + V I G A DG L+ GD I++I G N
Sbjct: 15 HVEEVELINDGSGLGFGIVGGKT---SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNV 71
Query: 1092 KNMTHAEAIEIIRNGDSTVRLLIKR 1116
+ MT + +++RN ++VR+L+ R
Sbjct: 72 QGMTSEQVAQVLRNCGNSVRMLVAR 96
Score = 101 bits (254), Expect = 1e-25
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 813 KSVEYSDVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSV 872
++V + V + L+ +G GF IVGG G V + IVPGG AD DGRL TGD I+ +
Sbjct: 9 ETVCWGHVEEVELINDGSGLGFGIVGGKTSG--VVVRTIVPGGLADRDGRLQTGDHILKI 66
Query: 873 DNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTS 914
+V + V +++ V + + R TS
Sbjct: 67 GGTNVQGMTSEQVAQVLRNCG--NSVRMLVARDPAGDISVTS 106
Score = 81.3 bits (201), Expect = 2e-18
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 434 GERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKC 493
G L+ GLGF IVGG S + ++++VP G A +G LQTGD ++ +
Sbjct: 14 GHVEEVELINDGSGLGFGIVGGKTSG---VVVRTIVPGGLADRDGRLQTGDHILKIGGTN 70
Query: 494 VLGYTHHDMVSVFQSISPGETVQLEVCR 521
V G T + V + + G +V++ V R
Sbjct: 71 VQGMTSEQVAQVLR--NCGNSVRMLVAR 96
Score = 73.6 bits (181), Expect = 8e-16
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 918 GYPYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDI 977
G+ +V + + G GF I+ +G + I+ ADR G L GDHIL + ++
Sbjct: 14 GHVEEVELIN-DGSGLGFGIVGG-KTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNV 71
Query: 978 MSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTT 1013
+ ++ ++++ G V + + +GD + ++
Sbjct: 72 QGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSG 107
Score = 62.4 bits (152), Expect = 7e-12
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 595 DSEYLTIPIVKGAMGFGFTIAD-SSHGQKVKKILDR---QRCKNLAEGDILIEINNLNVR 650
+ ++ G GF I + G V+ I+ R L GD +++I NV+
Sbjct: 13 WGHVEEVELINDGSGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQ 72
Query: 651 NMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSP 686
M +V QVL++C ++V R +
Sbjct: 73 GMTSEQVAQVLRNCGN--SVRMLVARDPAGDISVTS 106
Score = 28.9 bits (65), Expect = 3.0
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 7/89 (7%)
Query: 16 THWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEI 75
W E V L G L F + GG SG V I + + L+ IL+I
Sbjct: 11 VCWGHVEE-VELINDGSG-LGFGIVGGKTSG--VVVRTIVPGGLADRDGRLQTGDHILKI 66
Query: 76 QGQKVAGYTRRDTIAWLNHCCRSGKTLTL 104
G V G T L +C G ++ +
Sbjct: 67 GGTNVQGMTSEQVAQVLRNC---GNSVRM 92
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium, synaptosome,
tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Length = 120
Score = 114 bits (287), Expect = 5e-30
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 1011 STTSVSAASHREYEEGGEHDEQYHAIELSRG-TRGFGFSIRGGRE--FQNMALFVLQIAE 1067
S+ E +E+ +G T G SI GG ++ +F+ +
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHP 62
Query: 1068 NGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSV 1120
G AA L+VGD IV I G +T+ MTH +A+ +++N ++ + + GG V
Sbjct: 63 TGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDV 115
Score = 83.2 bits (206), Expect = 4e-19
Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 7/109 (6%)
Query: 809 PTNIKSVEYSDVMVITLLRQEN-GFGFRIVGGTEEGSQ---VSIGHIVPGGAADLDGRLC 864
T + + + + + G I GG + I + P G A +L
Sbjct: 14 GTENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLR 73
Query: 865 TGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETT 913
GD IV++ S +H V L+ AS G + + + +ET+
Sbjct: 74 VGDRIVTICGTSTEGMTHTQAVNLLKNAS--GSIEMQVVAGG-DVSETS 119
Score = 82.8 bits (205), Expect = 7e-19
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 447 GLGFTIVGGDDSKEEFLQI--KSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVS 504
LG +I GG S + I + P G AA L+ GD +V + G TH V+
Sbjct: 37 SLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVN 96
Query: 505 VFQSISPGETVQLEVCRGYPLP 526
+ ++ +++++V G +
Sbjct: 97 LLKNA--SGSIEMQVVAGGDVS 116
Score = 82.4 bits (204), Expect = 8e-19
Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 920 PYDVTITRRENEGFGFVII----SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHV 975
V + + + G I S L I + A ++ +L +GD I+ +
Sbjct: 25 LRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGT 84
Query: 976 DIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTT 1013
+ H + VNL+K++ + + + ++G D S T+
Sbjct: 85 STEGMTHTQAVNLLKNASGSIEMQV---VAGGDVSETS 119
Score = 57.4 bits (139), Expect = 5e-10
Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 585 PSSTDLILESDSEYLTIPIVKG-AMGFGFTIA---DSSHGQK---VKKILDRQ---RCKN 634
T+ + T+ + KG G +IA S G + + + +
Sbjct: 12 DLGTENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQK 71
Query: 635 LAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
L GD ++ I + M H + V +LK+ ++E + V
Sbjct: 72 LRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIE--MQVVAGG 113
Score = 32.7 bits (75), Expect = 0.18
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 6/107 (5%)
Query: 2 HKRPNKLDNLTAGGTHWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFA---YVTNINKEK 58
H + +D T V + P SL S+ GG S ++ ++
Sbjct: 5 HHHSSGVDLGTENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTG 64
Query: 59 VKGAEKYLEEKAIILEIQGQKVAGYTRRDTIAWLNHCCRSGKTLTLR 105
V + L I+ I G G T + L + ++ ++
Sbjct: 65 VAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLK---NASGSIEMQ 108
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 113 bits (284), Expect = 6e-30
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Query: 1030 DEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGI 1089
+ +EL R G +I G E + + + + G A G + +GD I+ IN
Sbjct: 3 GAIIYTVELKRYGGPLGITISGTEE-PFDPIIISSLTKGGLAERTGAIHIGDRILAINSS 61
Query: 1090 NTKNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAPT 1124
+ K +EAI +++ TV L IK+ +
Sbjct: 62 SLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQPAS 96
Score = 95.1 bits (237), Expect = 1e-23
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 818 SDVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSV 877
+ + + L R G I G E + I + GG A+ G + GD I+++++ S+
Sbjct: 4 AIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSL 63
Query: 878 LNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETT 913
+ L+ A VTL I+++ ++
Sbjct: 64 KGKPLSEAIHLLQMAG--ETVTLKIKKQTDAQPASS 97
Score = 79.3 bits (196), Expect = 5e-18
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
L + LG TI G ++ + + I S+ G A G + GD ++ +N + G
Sbjct: 11 LKRYGGPLGITISGTEEPFDPII-ISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLS 69
Query: 501 DMVSVFQSISPGETVQLEVCRGYP 524
+ + + Q GETV L++ +
Sbjct: 70 EAIHLLQ--MAGETVTLKIKKQTD 91
Score = 78.1 bits (193), Expect = 1e-17
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 921 YDVTITRRENEGFGFVIISSLNKAGS-TIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
Y V + +R G I + I + + A+R+G +H+GD ILA+N +
Sbjct: 7 YTVEL-KRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKG 65
Query: 980 LHHGEIVNLIKDSGYCVTLTIGAPISGDDASS 1011
E ++L++ +G VTL I ASS
Sbjct: 66 KPLSEAIHLLQMAGETVTLKIKKQTDAQPASS 97
Score = 61.6 bits (150), Expect = 9e-12
Identities = 12/91 (13%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 594 SDSEYLTIPIVKGAMGFGFTIA---DSSHGQKVKKILDRQ---RCKNLAEGDILIEINNL 647
S + T+ + + G TI+ + + + R + GD ++ IN+
Sbjct: 2 SGAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSS 61
Query: 648 NVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
+++ E + +L+ + +++
Sbjct: 62 SLKGKPLSEAIHLLQMAGE--TVTLKIKKQT 90
Score = 30.0 bits (68), Expect = 1.1
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGYT 84
V L G L ++ G + + ++++ K + + IL I + G
Sbjct: 9 VEL-KRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKP 67
Query: 85 RRDTIAWLNHCCRSGKTLTL 104
+ I L +G+T+TL
Sbjct: 68 LSEAIHLLQ---MAGETVTL 84
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 107
Score = 113 bits (284), Expect = 9e-30
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 1029 HDEQYHAIELSRGTRGFGFSIRGGREF-------QNMALFVLQIAENGPAALDGHLKVGD 1081
+ + L R + GF+I GGR + +FV +I ++GPAA +G L++ D
Sbjct: 5 SSGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHD 64
Query: 1082 EIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGS 1119
I+E+NG + TH +A+E + + + + R S
Sbjct: 65 RIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTS 102
Score = 85.1 bits (211), Expect = 7e-20
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 10/106 (9%)
Query: 814 SVEYSDVMVITLLRQENGFGFRIVGGTEEGSQVS--------IGHIVPGGAADLDGRLCT 865
S + + L R GF I+GG + IV G A +G L
Sbjct: 3 SGSSGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQI 62
Query: 866 GDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAE 911
D I+ V+ + ++H VE A + + + R+ P+
Sbjct: 63 HDRIIEVNGRDLSRATHDQAVEAFKTAK--EPIVVQVLRRTSGPSS 106
Score = 81.7 bits (202), Expect = 1e-18
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 434 GERIHSSLVKSLRGLGFTIVGGDDSKEEFLQ-------IKSVVPNGPAALEGHLQTGDVL 486
G+ + L + LGF I+GG S + + +V +GPAA EG LQ D +
Sbjct: 7 GKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRI 66
Query: 487 VYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLP 526
+ VN + + TH V F+ + E + ++V R P
Sbjct: 67 IEVNGRDLSRATHDQAVEAFK--TAKEPIVVQVLRRTSGP 104
Score = 72.4 bits (178), Expect = 2e-15
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 14/102 (13%)
Query: 918 GYPYDVTITRRENEGFGFVII---------SSLNKAGSTIGRIIEDSPADRSGELHLGDH 968
G + + R++ GF II + G + +I++ PA + G L + D
Sbjct: 7 GKSLTLVL-HRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDR 65
Query: 969 ILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI----GAPISG 1006
I+ VN D+ H + V K + + + + P SG
Sbjct: 66 IIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSGPSSG 107
Score = 58.2 bits (141), Expect = 2e-10
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 594 SDSEYLTIPIVKGAMGFGFTIA------DSSHGQK-----VKKILDR---QRCKNLAEGD 639
S + LT+ + + + GF I D+ G V KI+D + L D
Sbjct: 5 SSGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHD 64
Query: 640 ILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQR 676
+IE+N ++ H + V+ K + + V R
Sbjct: 65 RIIEVNGRDLSRATHDQAVEAFKTAKE--PIVVQVLR 99
Score = 28.1 bits (63), Expect = 5.7
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 12/99 (12%)
Query: 14 GGTHWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFA--------YVTNINKEKVKGAEKY 65
G + K + L GSL F++ GG S + +V+ I E
Sbjct: 1 GSSGSSGKSLTLVLHRDS-GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGG 59
Query: 66 LEEKAIILEIQGQKVAGYTRRDTIAWLNHCCRSGKTLTL 104
L+ I+E+ G+ ++ T + + + + +
Sbjct: 60 LQIHDRIIEVNGRDLSRATHDQAVEAFK---TAKEPIVV 95
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 111 bits (281), Expect = 1e-29
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 1032 QYHAIELSRG-TRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGIN 1090
Q + + + G G SI+GGRE M + + +I + A L VGD I+ +NG +
Sbjct: 4 QRRRVTVRKADAGGLGISIKGGRE-NKMPILISKIFKGLAADQTEALFVGDAILSVNGED 62
Query: 1091 TKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+ TH EA++ ++ V L +K
Sbjct: 63 LSSATHDEAVQALKKTGKEVVLEVKY 88
Score = 83.9 bits (208), Expect = 9e-20
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 822 VITLLRQEN-GFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNS 880
+T+ + + G G I GG E + I I G AAD L GD I+SV+ + ++
Sbjct: 7 RVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSA 66
Query: 881 SHHHVVELMGKASVYGRVTLGIRR 904
+H V+ + K V L ++
Sbjct: 67 THDEAVQALKKTG--KEVVLEVKY 88
Score = 78.9 bits (195), Expect = 6e-18
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 920 PYDVTITRRENEGFGFVIISSL-NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIM 978
VT+ + + G G I NK I +I + AD++ L +GD IL+VN D+
Sbjct: 5 RRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLS 64
Query: 979 SLHHGEIVNLIKDSGYCVTLTI 1000
S H E V +K +G V L +
Sbjct: 65 SATHDEAVQALKKTGKEVVLEV 86
Score = 70.8 bits (174), Expect = 4e-15
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 446 RGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
GLG +I GG ++K L I + A L GD ++ VN + + TH + V
Sbjct: 16 GGLGISIKGGRENKMPIL-ISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQA 74
Query: 506 FQSISPGETVQLEVCR 521
+ G+ V LEV
Sbjct: 75 LK--KTGKEVVLEVKY 88
Score = 59.6 bits (145), Expect = 4e-11
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 596 SEYLTIPIVKG-AMGFGFTIA---DSSHGQKVKKILDRQ---RCKNLAEGDILIEINNLN 648
+ + + K A G G +I ++ + KI + + L GD ++ +N +
Sbjct: 3 LQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGED 62
Query: 649 VRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
+ + H E VQ LK + E + V+ +
Sbjct: 63 LSSATHDEAVQALKKTGK--EVVLEVKYMK 90
Score = 39.6 bits (93), Expect = 4e-04
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 21 KETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKV 80
+ VT+ G L S+ GG ++ ++ I K + L IL + G+ +
Sbjct: 4 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDL 63
Query: 81 AGYTRRDTIAWLNHCCRSGKTLTL 104
+ T + + L ++GK + L
Sbjct: 64 SSATHDEAVQALK---KTGKEVVL 84
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 113 bits (284), Expect = 1e-29
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Query: 1022 EYEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGD 1081
E+ + + I + RG+ G GF+I GG + +F+ I GPA L G L+ GD
Sbjct: 4 EFLGEEDIPREPRRIVIHRGSTGLGFNIVGGED--GEGIFISFILAGGPADLSGELRKGD 61
Query: 1082 EIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAPTDNAAGIYSSDTS 1136
+I+ +NG++ +N +H +A ++N TV ++ + + + + + SS
Sbjct: 62 QILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDSSGRI 116
Score = 84.0 bits (208), Expect = 2e-19
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 818 SDVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSV 877
+ I + R G GF IVGG E+G + I I+ GG ADL G L GD+I+SV+ + +
Sbjct: 13 REPRRIVIHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 71
Query: 878 LNSSHHHVVELMGKASVYGRVTLGIRRK 905
N+SH + A VT+ + K
Sbjct: 72 RNASHEQAAIALKNAG--QTVTIIAQYK 97
Score = 81.3 bits (201), Expect = 2e-18
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Query: 908 PPAETTSMMLGYPYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGD 967
P + P + I R + G GF I+ + G I I+ PAD SGEL GD
Sbjct: 3 PEFLGEEDIPREPRRIVI-HRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGD 61
Query: 968 HILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSAASHR 1021
IL+VN VD+ + H + +K++G VT+ S +S R
Sbjct: 62 QILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDSSGR 115
Score = 77.9 bits (192), Expect = 3e-17
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 427 LNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVL 486
L +++ E + + GLGF IVGG+D + F I ++ GPA L G L+ GD +
Sbjct: 6 LGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIF--ISFILAGGPADLSGELRKGDQI 63
Query: 487 VYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
+ VN + +H + + G+TV +
Sbjct: 64 LSVNGVDLRNASHEQAAIALK--NAGQTVTIIAQY 96
Score = 62.4 bits (152), Expect = 8e-12
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 593 ESDSEYLTIPIVKGAMGFGFTIA--DSSHGQKVKKILDR---QRCKNLAEGDILIEINNL 647
+ E I I +G+ G GF I + G + IL L +GD ++ +N +
Sbjct: 10 DIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGV 69
Query: 648 NVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKTPTEMYT 698
++RN H + LK+ + II Q ++ + R + + T
Sbjct: 70 DLRNASHEQAAIALKNAGQ--TVTIIAQYKPEEYSRFEANSRVDSSGRIVT 118
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 112 bits (282), Expect = 2e-29
Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 1031 EQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGIN 1090
++ L G +GF ++GG++F NM L + + + G A+ +++GD ++ I+GI+
Sbjct: 4 GSSGSVSL-VGPAPWGFRLQGGKDF-NMPLTISSLKDGGKASQAH-VRIGDVVLSIDGIS 60
Query: 1091 TKNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAPTDNAAG 1129
+ MTH EA I+ ++ + ++R + ++G
Sbjct: 61 AQGMTHLEAQNKIKACTGSLNMTLQRASAAAKSEPVSSG 99
Score = 76.3 bits (188), Expect = 6e-17
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 826 LRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHV 885
L +GFR+ GG + ++I + GG A + GD ++S+D +S +H
Sbjct: 11 LVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAS-QAHVRIGDVVLSIDGISAQGMTHLEA 69
Query: 886 VELMGKASVYGRVTLGIRRKVMPPAETT 913
+ + G + + ++R
Sbjct: 70 QNKIKACT--GSLNMTLQRASAAAKSEP 95
Score = 69.3 bits (170), Expect = 2e-14
Identities = 15/93 (16%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 923 VTITRRENEGFGFVIISSL-NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
+++ +GF + TI + + A ++ + +GD +L+++ + +
Sbjct: 7 GSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMT 65
Query: 982 HGEIVNLIKDSGYCVTLTIGAPISGDDASSTTS 1014
H E N IK + +T+ + + +S
Sbjct: 66 HLEAQNKIKACTGSLNMTLQRASAAAKSEPVSS 98
Score = 61.6 bits (150), Expect = 9e-12
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 446 RGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
GF + GG D L I S+ G A+ ++ GDV++ ++ G TH + +
Sbjct: 15 APWGFRLQGGKDFNMP-LTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNK 72
Query: 506 FQSISPGETVQLEVCRGYPLPFDP 529
++ ++ + + R
Sbjct: 73 IKAC--TGSLNMTLQRASAAAKSE 94
Score = 59.7 bits (145), Expect = 5e-11
Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 594 SDSEYLTIPIVKGAMGFGFTI---ADSSHGQKVKKILDRQ--RCKNLAEGDILIEINNLN 648
S ++ +V A +GF + D + + + D ++ GD+++ I+ ++
Sbjct: 2 SSGSSGSVSLVGPA-PWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGIS 60
Query: 649 VRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPP 687
+ M H E +K C +L + +QR+ K
Sbjct: 61 AQGMTHLEAQNKIKACTGSLN--MTLQRASAAAKSEPVS 97
Score = 28.9 bits (65), Expect = 3.4
Identities = 11/85 (12%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 20 DKETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQK 79
+ ++++ F + GG D ++++ + K ++ ++ ++L I G
Sbjct: 2 SSGSSGSVSLVGPAPWGFRLQGGKDFNMPLTISSLK-DGGKASQAHVRIGDVVLSIDGIS 60
Query: 80 VAGYTRRDTIAWLNHCCRSGKTLTL 104
G T + + +L +
Sbjct: 61 AQGMTHLEAQNKIK---ACTGSLNM 82
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila
melanogaster} SCOP: b.72.1.1 b.72.1.1
Length = 88
Score = 111 bits (279), Expect = 2e-29
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 292 DLGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRLCKFQKKLEDCSDDELPYGWERIDD 351
LGPLP WEK VYF++H + T+ W DPR + ++ LP GWE
Sbjct: 9 ALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEV--SLINEGPLPPGWEIRYT 66
Query: 352 PAYGTYYIDHVNKQTQYENP 371
A +++DH ++T +E+P
Sbjct: 67 AAGERFFVDHNTRRTTFEDP 86
Score = 57.2 bits (138), Expect = 3e-10
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 291 LDLGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPR 326
++ GPLPP WE YT GE +F+DHN+ +++ DPR
Sbjct: 52 INEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 87
Score = 48.0 bits (114), Expect = 4e-07
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 335 EDCSDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQAKHR 378
+ LP GWE+ Y+++H N+ TQ+E+P Q +
Sbjct: 6 HMDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEV 49
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 110 bits (278), Expect = 4e-29
Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 1026 GGEHDEQYHAIELSRGTRG-FGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIV 1084
G + H++ + + G GFS+RGG E + +FV ++ E A G L VGD+I
Sbjct: 4 GSSGSDIIHSVRVEKSPAGRLGFSVRGGSEH-GLGIFVSKVEEGSSAERAG-LCVGDKIT 61
Query: 1085 EINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSV 1120
E+NG++ ++ T A++++ + + ++++R GS
Sbjct: 62 EVNGLSLESTTMGSAVKVLTSSS-RLHMMVRRMGSG 96
Score = 82.4 bits (204), Expect = 4e-19
Identities = 23/94 (24%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 818 SDVMVITLLRQENG-FGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLS 876
+ + + + G GF + GG+E G + + + G +A+ G LC GD+I V+ LS
Sbjct: 9 DIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLS 67
Query: 877 VLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPA 910
+ +++ V+++ + R+ + +RR P+
Sbjct: 68 LESTTMGSAVKVLTSS---SRLHMMVRRMGSGPS 98
Score = 67.0 bits (164), Expect = 1e-13
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 918 GYPYDVTITRRENEGFGFVIISSL-NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVD 976
+ V + + GF + + G + ++ E S A+R+G L +GD I VN +
Sbjct: 9 DIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLS 67
Query: 977 IMSLHHGEIVNLIKDSGYCVTLTI 1000
+ S G V ++ S + + +
Sbjct: 68 LESTTMGSAVKVLTSSSR-LHMMV 90
Score = 62.0 bits (151), Expect = 7e-12
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 6/87 (6%)
Query: 441 LVKSLRG-LGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTH 499
+ KS G LGF++ GG + + + V A G L GD + VN + T
Sbjct: 16 VEKSPAGRLGFSVRGGSEHGLG-IFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTM 73
Query: 500 HDMVSVFQSISPGETVQLEVCRGYPLP 526
V V S + + V R P
Sbjct: 74 GSAVKVLTS---SSRLHMMVRRMGSGP 97
Score = 46.2 bits (110), Expect = 2e-06
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 593 ESDSEYLTIPIVKGAMG-FGFTI---ADSSHGQKVKKILDR---QRCKNLAEGDILIEIN 645
++ + K G GF++ ++ G V K+ + +R L GD + E+N
Sbjct: 6 SGSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAG-LCVGDKITEVN 64
Query: 646 NLNVRNMCHGEVVQVLK 662
L++ + G V+VL
Sbjct: 65 GLSLESTTMGSAVKVLT 81
Score = 38.5 bits (90), Expect = 0.001
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKY-LEEKAIILEIQGQKVAGY 83
V + P G L FSV GGS+ G +V+ + + AE+ L I E+ G +
Sbjct: 14 VRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSS--AERAGLCVGDKITEVNGLSLEST 71
Query: 84 TRRDTIAWLNHCCRSGKTLTL 104
T + L S L +
Sbjct: 72 TMGSAVKVL----TSSSRLHM 88
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 110 bits (277), Expect = 6e-29
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 1029 HDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEING 1088
H++ L + +GF + GGR+F + L + ++ AAL L GD I ING
Sbjct: 5 SSGMPHSVTLRGPS-PWGFRLVGGRDF-SAPLTISRVHAGSKAALAA-LCPGDLIQAING 61
Query: 1089 INTKNMTHAEAIEIIRNGDSTVRLLIKRGGS 1119
+T+ MTH EA I+ + L + G S
Sbjct: 62 ESTELMTHLEAQNRIKGCHDHLTLSVSSGPS 92
Score = 75.4 bits (186), Expect = 1e-16
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 826 LRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHV 885
LR + +GFR+VGG + + ++I + G A L LC GD I +++ S +H
Sbjct: 14 LRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEA 72
Query: 886 VELMGKASVYGRVTLGIRR 904
+ +TL +
Sbjct: 73 QNRIKGCH--DHLTLSVSS 89
Score = 67.7 bits (166), Expect = 7e-14
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 918 GYPYDVTITRRENEGFGFVIISSL-NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVD 976
G P+ VT+ +GF ++ A TI R+ S A + L GD I A+N
Sbjct: 7 GMPHSVTLRG--PSPWGFRLVGGRDFSAPLTISRVHAGSKAALAA-LCPGDLIQAINGES 63
Query: 977 IMSLHHGEIVNLIKDSGYCVTLTIG-APISG 1006
+ H E N IK +TL++ P SG
Sbjct: 64 TELMTHLEAQNRIKGCHDHLTLSVSSGPSSG 94
Score = 60.7 bits (148), Expect = 2e-11
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 446 RGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
GF +VGG D L I V AAL L GD++ +N + TH + +
Sbjct: 18 SPWGFRLVGGRDFSAP-LTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNR 75
Query: 506 FQSISPGETVQLEVCRG 522
+ + + L V G
Sbjct: 76 IK--GCHDHLTLSVSSG 90
Score = 55.7 bits (135), Expect = 9e-10
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 594 SDSEYLTIPIVKGAMGFGFTI---ADSSHGQKVKKILDRQR--CKNLAEGDILIEINNLN 648
S ++ + + +GF + D S + ++ + L GD++ IN +
Sbjct: 5 SSGMPHSVTLRGPS-PWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGES 63
Query: 649 VRNMCHGEVVQVLKDCQRNLEANIIVQRS 677
M H E +K C +L + V
Sbjct: 64 TELMTHLEAQNRIKGCHDHLT--LSVSSG 90
Score = 33.4 bits (77), Expect = 0.066
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Query: 21 KETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKV 80
P ++T+ F + GG D ++ ++ K A L +I I G+
Sbjct: 6 SGMPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGS-KAALAALCPGDLIQAINGEST 64
Query: 81 AGYTRRDTIAWLNHCCRSGKTLTLRTVSSA 110
T + + C TL++ + S+
Sbjct: 65 ELMTHLEAQNRIKGCHDH-LTLSVSSGPSS 93
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 109 bits (275), Expect = 1e-28
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 1030 DEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGI 1089
QY ++L G +GF+++GG E L V +I + G AAL ++ GDE+V ING
Sbjct: 9 SFQYVPVQLQGGA-PWGFTLKGGLEH-CEPLTVSKIEDGGKAALSQKMRTGDELVNINGT 66
Query: 1090 NTKNMTHAEAIEIIRNGDSTVRLLIKRGGSV 1120
+ EA+ +I+ ++L+++R S
Sbjct: 67 PLY-GSRQEALILIKGSFRILKLIVRRRNSG 96
Score = 84.3 bits (209), Expect = 1e-19
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSS 881
V L+ +GF + GG E +++ I GG A L ++ TGDE+V+++ L S
Sbjct: 13 VPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTP-LYGS 71
Query: 882 HHHVVELMGKASVYGRVTLGIRRKVMPP 909
+ L+ + + L +RR+ P
Sbjct: 72 RQEALILIKGSF--RILKLIVRRRNSGP 97
Score = 72.0 bits (177), Expect = 2e-15
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 923 VTITRRENEGFGFVIISSL-NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
V + + +GF + L + T+ +I + A S ++ GD ++ +N +
Sbjct: 13 VPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGSR 72
Query: 982 HGEIVNLIKDSGYCVTLTI----GAPISG 1006
E + LIK S + L + P SG
Sbjct: 73 Q-EALILIKGSFRILKLIVRRRNSGPSSG 100
Score = 67.0 bits (164), Expect = 1e-13
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
GFT+ GG + E L + + G AAL ++TGD LV +N + G + + + +
Sbjct: 22 PWGFTLKGGLEHCE-PLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-SRQEALILI 79
Query: 507 QSISPGETVQLEVCRGYPLPF 527
+ ++L V R P
Sbjct: 80 KGS--FRILKLIVRRRNSGPS 98
Score = 53.9 bits (130), Expect = 4e-09
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 595 DSEYLTIPIVKGAMGFGFTIA---DSSHGQKVKKILDR---QRCKNLAEGDILIEINNLN 648
+Y+ + + GA +GFT+ + V KI D + + GD L+ IN
Sbjct: 9 SFQYVPVQLQGGA-PWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTP 67
Query: 649 VRNMCHGEVVQVLKDCQRNLEANIIVQRS 677
+ E + ++K R L+ +IV+R
Sbjct: 68 LYGS-RQEALILIKGSFRILK--LIVRRR 93
Score = 31.5 bits (72), Expect = 0.29
Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGYT 84
V + + F++ GG + E V+ I + + ++ I G + G +
Sbjct: 13 VPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-S 71
Query: 85 RRDTIAWLNHCCRSGKTLTL 104
R++ + + S + L L
Sbjct: 72 RQEALILIK---GSFRILKL 88
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity
ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A
2h3m_A 2rrm_A
Length = 107
Score = 109 bits (275), Expect = 1e-28
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 1026 GGEHDEQYHAIELSRG-TRGFGFSIRGGREFQ-----NMALFVLQIAENGPAALDGHLKV 1079
G + H + L R GFG +I GGR+ ++ + + + GPA +G L+
Sbjct: 1 GSHMIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQE 58
Query: 1080 GDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
D + +NG++ N+ HA A++ +R ++ I+R
Sbjct: 59 NDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRR 95
Score = 77.0 bits (190), Expect = 4e-17
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Query: 819 DVMVITLLRQEN-GFGFRIVGGTEEGSQVS------IGHIVPGGAADLDGRLCTGDEIVS 871
+ +TL R GFG I GG + S I ++ GG A+ G+L D +
Sbjct: 7 EQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVAM 64
Query: 872 VDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSMM 916
V+ +S+ N H V+ + K+ + IRRK T+ +
Sbjct: 65 VNGVSMDNVEHAFAVQQLRKSG--KNAKITIRRKKGGGWRRTTYL 107
Score = 73.9 bits (182), Expect = 5e-16
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 920 PYDVTITRRENEGFGFVII----SSLNKAGST---IGRIIEDSPADRSGELHLGDHILAV 972
+ VT+ R GFG I + ++G T I +++ PA+ G+L D + V
Sbjct: 8 QHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVAMV 65
Query: 973 NHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASST 1012
N V + ++ H V ++ SG +TI G +T
Sbjct: 66 NGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGWRRTT 105
Score = 71.6 bits (176), Expect = 3e-15
Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 430 DELIGERIHSSLVK-SLRGLGFTIVGGDDSKEEFLQ-----IKSVVPNGPAALEGHLQTG 483
+I E+ +L + G G I GG D+ I V+ GPA EG LQ
Sbjct: 2 SHMIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQEN 59
Query: 484 DVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
D + VN + H V + G+ ++ + R
Sbjct: 60 DRVAMVNGVSMDNVEHAFAVQQLR--KSGKNAKITIRR 95
Score = 58.9 bits (143), Expect = 1e-10
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 22/110 (20%)
Query: 593 ESDSEYLTIPIVKG-AMGFGFTIA---DSSHGQK------VKKIL-----DRQRCKNLAE 637
E T+ + + GFG I+ D+ H Q + +L + Q L E
Sbjct: 3 HMIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQ----LQE 58
Query: 638 GDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR-LQHKKTSP 686
D + +N +++ N+ H VQ L+ + A I ++R + ++T+
Sbjct: 59 NDRVAMVNGVSMDNVEHAFAVQQLRKSGK--NAKITIRRKKGGGWRRTTY 106
Score = 37.0 bits (86), Expect = 0.004
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 11/96 (11%)
Query: 15 GTHWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFA------YVTNINKEKVKGAEKYLEE 68
G+H ++ VTL P ++ GG D+ F ++++ K AE L+E
Sbjct: 1 GSHMIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGP--AEGQLQE 58
Query: 69 KAIILEIQGQKVAGYTRRDTIAWLNHCCRSGKTLTL 104
+ + G + + L GK +
Sbjct: 59 NDRVAMVNGVSMDNVEHAFAVQQLRKS---GKNAKI 91
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding
protein signaling protein; 1.56A {Homo sapiens} SCOP:
b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A
1ybo_A
Length = 166
Score = 111 bits (280), Expect = 2e-28
Identities = 38/197 (19%), Positives = 71/197 (36%), Gaps = 41/197 (20%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
P +V + + ++ G + S G + + +SPA G L GD +L +N +
Sbjct: 5 PREVILCKDQDGKIGLRLKSI--DNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAG 61
Query: 980 LHHGEIVNLIKDS-GYCVTLTIGAPISGDDASSTTSVSAASHREYEEGGEHDEQYHAIEL 1038
+ ++K + G +T+TI I +
Sbjct: 62 WSSDKAHKVLKQAFGEKITMTI---------------------------RDRPFERTITM 94
Query: 1039 SRGTRG-FGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA 1097
+ + G GF + G+ I ++ AA +G L I EING N + +
Sbjct: 95 HKDSTGHVGFIFKNGKI--------TSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDS 145
Query: 1098 EAIEIIRNGDSTVRLLI 1114
+ +I+ + V + I
Sbjct: 146 QIADILSTSGTVVTITI 162
Score = 111 bits (280), Expect = 2e-28
Identities = 36/179 (20%), Positives = 77/179 (43%), Gaps = 25/179 (13%)
Query: 823 ITLLRQENG-FGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSS 881
+ L + ++G G R+ + + + + A L G L GD+++ ++ + S
Sbjct: 8 VILCKDQDGKIGLRLKSI---DNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWS 63
Query: 882 HHHVVELMGKASVYGRVTLGIRRKVMPPAETTSMMLGYPYDVTITRRENEGFGFVIISSL 941
+++ K + ++T+ IR + + +T+ + GF+
Sbjct: 64 SDKAHKVL-KQAFGEKITMTIRDR------------PFERTITMHKDSTGHVGFI----- 105
Query: 942 NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
I I++DS A R+G L +I +N +++ L +I +++ SG VT+TI
Sbjct: 106 -FKNGKITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 162
Score = 76.4 bits (188), Expect = 3e-16
Identities = 20/101 (19%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 1034 HAIELSRGTRG-FGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTK 1092
+ L + G G ++ + +FV + N PA+L G L+ GD++++ING N
Sbjct: 6 REVILCKDQDGKIGLRLKSI----DNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCA 60
Query: 1093 NMTHAEAIEIIRN-GDSTVRLLIKRGGSVVAPTDNAAGIYS 1132
+ +A ++++ + + I+ T +
Sbjct: 61 GWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGH 101
Score = 61.8 bits (150), Expect = 5e-11
Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
+G + D+ + ++ V N PA+L G L+ GD ++ +N + G++ V
Sbjct: 17 KIGLRLKSIDNG----IFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVL 71
Query: 507 QSISPGETVQLEVCRGYPLPFDPNDPNTE 535
+ + GE + + + ++
Sbjct: 72 KQ-AFGEKITMTIRDRPFERTITMHKDST 99
Score = 49.1 bits (117), Expect = 1e-06
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 6/97 (6%)
Query: 600 TIPIVKGAMG-FGFTIADSSHGQKVKKILDR---QRCKNLAEGDILIEINNLNVRNMCHG 655
+ + K G G + +G V+ + L GD +++IN N
Sbjct: 7 EVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSD 65
Query: 656 EVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKT 692
+ +VLK + + ++ + T +
Sbjct: 66 KAHKVLKQA-FGEKITMTIRDRPFERTITMHKDSTGH 101
Score = 41.7 bits (98), Expect = 3e-04
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
+GF G + S+V + AA G L T + +N + V+G + +
Sbjct: 101 HVGFIFKNGKIT--------SIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADIL 151
Query: 507 QSISPGETVQLEVCRGY 523
+ G V + + +
Sbjct: 152 S--TSGTVVTITIMPAF 166
Score = 38.3 bits (89), Expect = 0.005
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 1/96 (1%)
Query: 578 KMVKLERPSSTDLILESDSEYLTIPIVKGAMGFGFTIADSSHGQKVKKILDRQRCKNLAE 637
K++K + + TI + K + G I + + K R L
Sbjct: 69 KVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLT- 127
Query: 638 GDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANII 673
+ EIN NV + ++ +L + I+
Sbjct: 128 EHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM 163
Score = 31.3 bits (71), Expect = 0.86
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 6/94 (6%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKY-LEEKAIILEIQGQKVAGY 83
V L DG + + +V + A L +L+I G+ AG+
Sbjct: 8 VILCKDQDGKIGLRLKSI---DNGIFVQLVQANSP--ASLVGLRFGDQVLQINGENCAGW 62
Query: 84 TRRDTIAWLNHCCRSGKTLTLRTVSSAYVTTDLR 117
+ L T+T+R T +
Sbjct: 63 SSDKAHKVLKQAFGEKITMTIRDRPFERTITMHK 96
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 109 bits (273), Expect = 2e-28
Identities = 46/82 (56%), Positives = 59/82 (71%)
Query: 597 EYLTIPIVKGAMGFGFTIADSSHGQKVKKILDRQRCKNLAEGDILIEINNLNVRNMCHGE 656
E +T+ IVKGA GFGFTIADS GQ+VK+ILD Q C L EGD+++EIN NV+N+ H E
Sbjct: 10 ELMTLTIVKGAQGFGFTIADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQNLSHTE 69
Query: 657 VVQVLKDCQRNLEANIIVQRSR 678
VV +LKDC E ++I+ R
Sbjct: 70 VVDILKDCPIGSETSLIIHRGS 91
Score = 90.9 bits (226), Expect = 4e-22
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 1026 GGEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVE 1085
G + + + +G +GFGF+I Q V QI + L GD IVE
Sbjct: 4 GSSGQAELMTLTIVKGAQGFGFTIADSPTGQ----RVKQILDIQGCP---GLCEGDLIVE 56
Query: 1086 INGINTKNMTHAEAIEIIRNGD--STVRLLIKRGGS 1119
IN N +N++H E ++I+++ S L+I RG
Sbjct: 57 INQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSG 92
Score = 73.2 bits (180), Expect = 8e-16
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 434 GERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKC 493
E + ++VK +G GFTI + ++K ++ L GD++V +N +
Sbjct: 9 AELMTLTIVKGAQGFGFTIADSPTGQ----RVKQILDIQGCP---GLCEGDLIVEINQQN 61
Query: 494 VLGYTHHDMVSVFQSISPGETVQLEVCRGYP 524
V +H ++V + + G L + RG
Sbjct: 62 VQNLSHTEVVDILKDCPIGSETSLIIHRGSG 92
Score = 68.6 bits (168), Expect = 3e-14
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 819 DVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVL 878
++M +T+++ GFGF I + I+ LC GD IV ++ +V
Sbjct: 10 ELMTLTIVKGAQGFGFTIADSPT---GQRVKQILDIQGC---PGLCEGDLIVEINQQNVQ 63
Query: 879 NSSHHHVVELMGKASVYGRVTLGIRRKVMP 908
N SH VV+++ + +L I R P
Sbjct: 64 NLSHTEVVDILKDCPIGSETSLIIHRGSGP 93
Score = 61.6 bits (150), Expect = 9e-12
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIG-RIIEDSPADRSGELHLGDHILAVNHVDIM 978
+TI + +GFGF I A S G R+ + L GD I+ +N ++
Sbjct: 11 LMTLTI-VKGAQGFGFTI------ADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQ 63
Query: 979 SLHHGEIVNLIKD--SGYCVTLTI---GAPISG 1006
+L H E+V+++KD G +L I P SG
Sbjct: 64 NLSHTEVVDILKDCPIGSETSLIIHRGSGPSSG 96
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 108 bits (273), Expect = 2e-28
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 1040 RGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEA 1099
G +GF I GGR+F + + V ++AE G A D L+ GD IV ING + + M HAEA
Sbjct: 9 AGPAPWGFRITGGRDF-HTPIMVTKVAERGKAK-DADLRPGDIIVAINGESAEGMLHAEA 66
Query: 1100 IEIIRNGDSTVRLLIKRGGSV 1120
IR S +RL + R S+
Sbjct: 67 QSKIRQSPSPLRLQLDRITSL 87
Score = 76.2 bits (188), Expect = 5e-17
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 821 MVIT-LLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLN 879
M +T + +GFRI GG + + + + + G A D L GD IV+++ S
Sbjct: 2 MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAK-DADLRPGDIIVAINGESAEG 60
Query: 880 SSHHHVVELMGKASVYGRVTLGIRR 904
H + ++ + L + R
Sbjct: 61 MLHAEAQSKIRQSP--SPLRLQLDR 83
Score = 68.8 bits (169), Expect = 2e-14
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 923 VTITRRENEGFGFVIIS-SLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
+T+ +GF I + ++ E A + L GD I+A+N +
Sbjct: 4 LTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGML 62
Query: 982 HGEIVNLIKDSGYCVTLTI 1000
H E + I+ S + L +
Sbjct: 63 HAEAQSKIRQSPSPLRLQL 81
Score = 64.2 bits (157), Expect = 8e-13
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 446 RGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
GF I GG D + + V G A L+ GD++V +N + G H + S
Sbjct: 12 APWGFRITGGRDFHTP-IMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSK 69
Query: 506 FQSISPGETVQLEVCRGYPL 525
+ ++L++ R L
Sbjct: 70 IRQS--PSPLRLQLDRITSL 87
Score = 55.0 bits (133), Expect = 1e-09
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 604 VKGAMGFGFTI---ADSSHGQKVKKILDRQR--CKNLAEGDILIEINNLNVRNMCHGEVV 658
V G +GF I D V K+ +R + +L GDI++ IN + M H E
Sbjct: 8 VAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQ 67
Query: 659 QVLKDCQRNLEANIIVQRS 677
++ L + + R
Sbjct: 68 SKIRQSPSPLR--LQLDRI 84
Score = 36.1 bits (84), Expect = 0.006
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 24 PVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGY 83
+T+ V F + GG D VT + E+ K + L II+ I G+ G
Sbjct: 3 ALTVDVAGPAPWGFRITGGRDFHTPIMVTKVA-ERGKAKDADLRPGDIIVAINGESAEGM 61
Query: 84 TRRDTIAWLNHCCRSGKTLTL 104
+ + + +S L L
Sbjct: 62 LHAEAQSKI---RQSPSPLRL 79
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF),
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.2
Length = 119
Score = 109 bits (275), Expect = 2e-28
Identities = 27/100 (27%), Positives = 49/100 (49%)
Query: 1017 AASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGH 1076
+S + D + I G GFS+ GG + +N + V ++ NG A+ +G
Sbjct: 1 GSSGSSGATLKQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGT 60
Query: 1077 LKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
++ G+E++ ING + K TH +A+ I+R + +I
Sbjct: 61 IQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVT 100
Score = 90.6 bits (225), Expect = 1e-21
Identities = 26/107 (24%), Positives = 50/107 (46%)
Query: 428 NPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLV 487
+L G + + GLGF++ GG D + + + + V PNG A+ EG +Q G+ ++
Sbjct: 9 TLKQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVL 68
Query: 488 YVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDPNT 534
+N K + G THHD +++ + + + P + +
Sbjct: 69 SINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPDLNSSG 115
Score = 89.8 bits (223), Expect = 2e-21
Identities = 20/96 (20%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 821 MVITLLRQENGFGFRIVGGTE-EGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLN 879
+ I + G GF + GG + E +++ + P G A +G + G+E++S++ S+
Sbjct: 18 VTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKG 77
Query: 880 SSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSM 915
++HH + ++ +A + + R+ P +
Sbjct: 78 TTHHDALAILRQAREPRQAVIVTRKL--TPEAMPDL 111
Score = 72.9 bits (179), Expect = 1e-15
Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
Query: 908 PPAETTSMMLGYPYDVTITRRENEGFGFVII--SSLNKAGSTIGRIIEDSPADRSGELHL 965
+ T L + + + E G GF + + L T+ R+ + A + G +
Sbjct: 4 GSSGATLKQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQK 63
Query: 966 GDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI----GAPISGDDASSTTSVSA 1017
G+ +L++N + H + + +++ + I P + D +S+ S
Sbjct: 64 GNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPDLNSSGPSSG 119
Score = 63.6 bits (155), Expect = 3e-12
Identities = 20/117 (17%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Query: 585 PSSTDLILESDSEYLTIPIVKGAMGFGFTIADSSHGQK----VKKILDRQ---RCKNLAE 637
SS + + D ++TI + G GF++A + + V ++ + + +
Sbjct: 4 GSSGATLKQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQK 63
Query: 638 GDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKTPT 694
G+ ++ IN +++ H + + +L+ + +A I+ ++ + P S P+
Sbjct: 64 GNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLT---PEAMPDLNSSGPS 117
Score = 31.3 bits (71), Expect = 0.55
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 1/100 (1%)
Query: 20 DKETPVTLTVPPDGSLNFSVGGGSDSGEFA-YVTNINKEKVKGAEKYLEEKAIILEIQGQ 78
D L L FS+ GG+D V + + E +++ +L I G+
Sbjct: 14 DGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGK 73
Query: 79 KVAGYTRRDTIAWLNHCCRSGKTLTLRTVSSAYVTTDLRQ 118
+ G T D +A L + + + + DL
Sbjct: 74 SLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPDLNS 113
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 110 bits (276), Expect = 2e-28
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 1031 EQYHAIELSRGTRGF-GFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGI 1089
+ L + + G SI GG ++ L+++Q+ +N PAALDG + GDEI +NG
Sbjct: 18 TVPGKVTLQKDAQNLIGISIGGGAQY-CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR 76
Query: 1090 NTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+ K T E ++I+ V + +
Sbjct: 77 SIKGKTKVEVAKMIQEVKGEVTIHYNK 103
Score = 87.1 bits (216), Expect = 2e-20
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 818 SDVMVITLLRQENGF-GFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLS 876
+ +TL + G I GG + + I + A LDG + GDEI V+ S
Sbjct: 18 TVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRS 77
Query: 877 VLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAE 911
+ + V +++ + G VT+ + P +
Sbjct: 78 IKGKTKVEVAKMIQEVK--GEVTIHYNKLQADPKQ 110
Score = 77.1 bits (190), Expect = 7e-17
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
Query: 419 NDENYFFTLNPDELIGERIHSSLVKSLRG-LGFTIVGGDDSKEEFLQIKSVVPNGPAALE 477
D +Y + + +L K + +G +I GG I V N PAAL+
Sbjct: 3 ADLDYDIEEDKLGIPTVPGKVTLQKDAQNLIGISIGGGAQYCPCLY-IVQVFDNTPAALD 61
Query: 478 GHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLP 526
G + GD + VN + + G T ++ + Q + V + + P
Sbjct: 62 GTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV--KGEVTIHYNKLQADP 108
Score = 75.2 bits (185), Expect = 3e-16
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 911 ETTSMMLGYPYDVTITRRENEGFGFVIIS-SLNKAGSTIGRIIEDSPADRSGELHLGDHI 969
E + P VT+ + G I + I ++ +++PA G + GD I
Sbjct: 11 EDKLGIPTVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEI 70
Query: 970 LAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
VN I E+ +I++ VT+
Sbjct: 71 TGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 101
Score = 58.2 bits (141), Expect = 3e-10
Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 9/109 (8%)
Query: 592 LESDSEYLTIPIVKGAMGF-GFTI---ADSSHGQKVKKILDRQ---RCKNLAEGDILIEI 644
L + + + K A G +I A + ++ D +A GD + +
Sbjct: 14 LGIPTVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGV 73
Query: 645 NNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKTP 693
N +++ EV +++++ + + I + + K+ F
Sbjct: 74 NGRSIKGKTKVEVAKMIQEVKGEVT--IHYNKLQADPKQLEVLFNGPGI 120
Score = 38.2 bits (89), Expect = 0.003
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGYT 84
VTL + S+GGG+ Y+ + + + I + G+ + G T
Sbjct: 23 VTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKT 82
Query: 85 RRDTIAWLNHCCRSGKTLTL 104
+ + + +T+
Sbjct: 83 KVEVAKMIQ---EVKGEVTI 99
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics
in europe, spine, structural genomics, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 109 bits (274), Expect = 2e-28
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 1030 DEQYHAIELSRGTRGFGFSI-----RGGREFQ--NMALFVLQIAENGPAALDGHLKVGDE 1082
+EL++ G S+ +GG + ++V + G A DG + GD
Sbjct: 7 PGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDR 66
Query: 1083 IVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAP 1123
++ +NG++ + TH +A+E +RN V LL+++G S +
Sbjct: 67 VLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSPTSK 107
Score = 87.0 bits (216), Expect = 1e-20
Identities = 22/102 (21%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 818 SDVMVITLLRQENGFGFRIVGGTEEGSQVS--------IGHIVPGGAADLDGRLCTGDEI 869
D+ + L + +N G + ++G + + ++P GAA+ DGR+ GD +
Sbjct: 8 GDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRV 67
Query: 870 VSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAE 911
++V+ +S+ ++H VE + V L + + P ++
Sbjct: 68 LAVNGVSLEGATHKQAVETLRNTG--QVVHLLLEKGQSPTSK 107
Score = 78.5 bits (194), Expect = 1e-17
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 434 GERIHSSLVKSLRGLGFTIV-----GGDDSKEEFLQI--KSVVPNGPAALEGHLQTGDVL 486
G+ L K+ LG ++ GG ++ I K+V+P G A +G + GD +
Sbjct: 8 GDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRV 67
Query: 487 VYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYP 524
+ VN + G TH V + + G+ V L + +G
Sbjct: 68 LAVNGVSLEGATHKQAVETLR--NTGQVVHLLLEKGQS 103
Score = 71.6 bits (176), Expect = 4e-15
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 921 YDVTITRRENEGFGFVIISSLNKAGST---------IGRIIEDSPADRSGELHLGDHILA 971
++V + + + G + +K G + +I A+ G +H GD +LA
Sbjct: 11 FEVELAK-NDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLA 69
Query: 972 VNHVDIMSLHHGEIVNLIKDSGYCVTLTIG 1001
VN V + H + V ++++G V L +
Sbjct: 70 VNGVSLEGATHKQAVETLRNTGQVVHLLLE 99
Score = 56.6 bits (137), Expect = 8e-10
Identities = 12/104 (11%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 594 SDSEYLTIPIVKGAMGFGFTIA--------DSSHGQK---VKKILDR---QRCKNLAEGD 639
+ + + K G ++ ++S VK ++ + + + +GD
Sbjct: 6 KPGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGD 65
Query: 640 ILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKK 683
++ +N +++ H + V+ L++ + ++++++ + K
Sbjct: 66 RVLAVNGVSLEGATHKQAVETLRNTGQ--VVHLLLEKGQSPTSK 107
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 108 bits (272), Expect = 2e-28
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
+ L G +GF ++GG++F N+ L + ++ G AA G + VGD ++ I+G N
Sbjct: 3 DSFKVVL-EGPAPWGFRLQGGKDF-NVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENA 59
Query: 1092 KNMTHAEAIEIIRNGDSTVRLLIKRGGSVV 1121
++TH EA IR + L + R + +
Sbjct: 60 GSLTHIEAQNKIRACGERLSLGLSRAITSL 89
Score = 76.6 bits (189), Expect = 4e-17
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 825 LLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHH 884
+L +GFR+ GG + +SI + PGG A G + GD ++S+D + + +H
Sbjct: 8 VLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIE 66
Query: 885 VVELMGKASVYGRVTLGIRRKV 906
+ R++LG+ R +
Sbjct: 67 AQNKIRACG--ERLSLGLSRAI 86
Score = 70.4 bits (173), Expect = 6e-15
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 923 VTITRRENEGFGFVIISSL-NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
+ +GF + +I R+ A ++G + +GD +L+++ + SL
Sbjct: 5 FKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLT 63
Query: 982 HGEIVNLIKDSGYCVTLTIGAPISG 1006
H E N I+ G ++L + I+
Sbjct: 64 HIEAQNKIRACGERLSLGLSRAITS 88
Score = 64.6 bits (158), Expect = 6e-13
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 446 RGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
GF + GG D L I + P G AA G + GD ++ ++ + TH + +
Sbjct: 13 APWGFRLQGGKDFNVP-LSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNK 70
Query: 506 FQSISPGETVQLEVCRG 522
++ GE + L + R
Sbjct: 71 IRAC--GERLSLGLSRA 85
Score = 55.8 bits (135), Expect = 8e-10
Identities = 14/86 (16%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 597 EYLTIPIVKGAMGFGFTI---ADSSHGQKVKKILDRQR--CKNLAEGDILIEINNLNVRN 651
+ + +++G +GF + D + + ++ + +A GD ++ I+ N +
Sbjct: 3 DSFKV-VLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGS 61
Query: 652 MCHGEVVQVLKDCQRNLEANIIVQRS 677
+ H E ++ C L + + R+
Sbjct: 62 LTHIEAQNKIRACGERLS--LGLSRA 85
Score = 33.8 bits (78), Expect = 0.040
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 7/88 (7%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGYT 84
+ + F + GG D ++ + K A+ + +L I G+ T
Sbjct: 5 FKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGG-KAAQAGVAVGDWVLSIDGENAGSLT 63
Query: 85 RRDTIAWLNHCCRSGKTLTL---RTVSS 109
+ + G+ L+L R ++S
Sbjct: 64 HIEAQNKI---RACGERLSLGLSRAITS 88
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 109 bits (273), Expect = 4e-28
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 1016 SAASHREYEEGGEHDEQYHAIELSRG-TRGFGFSIRGGREFQ--------NMALFVLQIA 1066
S+ E Q +EL R ++ G SI GGR +F+ +
Sbjct: 8 SSGVDLGTENLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVL 67
Query: 1067 ENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
E+ PA +G LK GD IVE++G++ ++ +H +A+E IR + V +++
Sbjct: 68 EDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 117
Score = 84.8 bits (210), Expect = 1e-19
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 920 PYDVTITRRENEGFGFVII----------SSLNKAGSTIGRIIEDSPADRSGELHLGDHI 969
P V + R ++ G I+ + G I ++EDSPA ++G L GD I
Sbjct: 25 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 84
Query: 970 LAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
+ V+ +D+ H + V I+ +G V +
Sbjct: 85 VEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 115
Score = 80.6 bits (199), Expect = 4e-18
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 12/109 (11%)
Query: 808 RPTNIKSVEYSDVMVITLLRQEN-GFGFRIVGGTEEGSQVS---------IGHIVPGGAA 857
T + + L R+ + G IVGG GS++S I H++ A
Sbjct: 13 LGTENLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPA 72
Query: 858 DLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKV 906
+G L GD IV VD + + ++SH VE + KA V ++ +
Sbjct: 73 GKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAG--NPVVFMVQSII 119
Score = 72.1 bits (177), Expect = 3e-15
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 446 RGLGFTIVGGDDSKEEFLQ--------IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGY 497
+ LG +IVGG IK V+ + PA G L+ GD +V V+ +
Sbjct: 36 KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDA 95
Query: 498 THHDMVSVFQSISPGETVQLEVCR 521
+H V + G V V
Sbjct: 96 SHEQAVEAIR--KAGNPVVFMVQS 117
Score = 52.8 bits (127), Expect = 2e-08
Identities = 14/108 (12%), Positives = 39/108 (36%), Gaps = 18/108 (16%)
Query: 585 PSSTDLILESDSEYLTIPIVKG-AMGFGFTIADSSHGQK------------VKKILDRQ- 630
T+ + + + + + + G +I +K +L+
Sbjct: 12 DLGTENLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSP 71
Query: 631 --RCKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQR 676
+ L GD ++E++ +++R+ H + V+ ++ +VQ
Sbjct: 72 AGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGN--PVVFMVQS 117
Score = 29.7 bits (67), Expect = 2.1
Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 12/113 (10%)
Query: 2 HKRPNKLDNLTAGGTHWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFA---------YVT 52
H + +D T + V L P SL S+ GG G ++
Sbjct: 5 HHHSSGVDLGTENLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIK 64
Query: 53 NINKEKVKGAEKYLEEKAIILEIQGQKVAGYTRRDTIAWLNHCCRSGKTLTLR 105
++ ++ G L+ I+E+ G + + + + ++G +
Sbjct: 65 HVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIR---KAGNPVVFM 114
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 116 bits (292), Expect = 4e-28
Identities = 32/176 (18%), Positives = 65/176 (36%), Gaps = 20/176 (11%)
Query: 827 RQENGFGFRIVGGTEEG--SQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHH 884
+ G +V V + +++ GG A G+L GD+I+S++ S++
Sbjct: 213 HKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLAT 272
Query: 885 VVELMGKASVYGRVTLGIRRKVMPPAETTSMMLGYPYDVTITRRENEGFGFVIISSLNKA 944
++ +V L I PP T + GF +
Sbjct: 273 CQGIIKGLKNQTQVKLNIVS--CPPVTTV---------LIKRPDLKYQLGFSV------Q 315
Query: 945 GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
I ++ A+R G + +G I+ +N +++ H +IV + +S + +
Sbjct: 316 NGIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKT 370
Score = 115 bits (288), Expect = 2e-27
Identities = 34/217 (15%), Positives = 73/217 (33%), Gaps = 35/217 (16%)
Query: 904 RKVMPPAETTSMMLGYPYDVTITRRENEGFGFVIISSLNKAGST---IGRIIEDSPADRS 960
+++ ++ + + + E G V++ S + + ++ PA RS
Sbjct: 189 QEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARS 248
Query: 961 GELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSAASH 1020
G+L +GD I+++N ++ L +IK + +
Sbjct: 249 GKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIV----------------- 291
Query: 1021 REYEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVG 1080
I+ GFS++ G + + G A G ++VG
Sbjct: 292 ------SCPPVTTVLIKRPDLKYQLGFSVQNG--------IICSLMRGGIAERGG-VRVG 336
Query: 1081 DEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRG 1117
I+EING + H + ++ + N + +
Sbjct: 337 HRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPA 373
Score = 74.6 bits (182), Expect = 4e-14
Identities = 20/150 (13%), Positives = 47/150 (31%), Gaps = 1/150 (0%)
Query: 968 HILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSAASHREYEEGG 1027
H+ +++ G+ ++ +S + S + + +
Sbjct: 141 HVFESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDIINTQEMYNDDLIHFS 200
Query: 1028 EHDEQYHAIELSRGTRGFGFSIRGGR-EFQNMALFVLQIAENGPAALDGHLKVGDEIVEI 1086
+ G + + + + GPAA G L +GD+I+ I
Sbjct: 201 NSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSI 260
Query: 1087 NGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
NG + + A II+ + ++ +
Sbjct: 261 NGTSLVGLPLATCQGIIKGLKNQTQVKLNI 290
Score = 64.2 bits (155), Expect = 8e-11
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 447 GLGFTIV-GGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
LG +V G S + + +++ GPAA G L GD ++ +N ++G +
Sbjct: 217 ILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGI 276
Query: 506 FQSISPGETVQLEVCRGYP 524
+ + V+L + P
Sbjct: 277 IKGLKNQTQVKLNIVSCPP 295
Score = 54.2 bits (129), Expect = 1e-07
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 11/88 (12%)
Query: 435 ERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCV 494
+ LGF++ G I S++ G A G ++ G ++ +N + V
Sbjct: 297 TTVLIKRPDLKYQLGFSVQNG--------IICSLMRGGIAERGG-VRVGHRIIEINGQSV 347
Query: 495 LGYTHHDMVSVFQSISPGETVQLEVCRG 522
+ H +V + + ++
Sbjct: 348 VATAHEKIVQALSNS--VGEIHMKTMPA 373
Score = 45.3 bits (106), Expect = 8e-05
Identities = 10/76 (13%), Positives = 27/76 (35%), Gaps = 8/76 (10%)
Query: 609 GFGFTIADSSHGQKVKKILDRQ--------RCKNLAEGDILIEINNLNVRNMCHGEVVQV 660
G + +S G + ++ R L+ GD ++ IN ++ + +
Sbjct: 217 ILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGI 276
Query: 661 LKDCQRNLEANIIVQR 676
+K + + + +
Sbjct: 277 IKGLKNQTQVKLNIVS 292
Score = 43.0 bits (100), Expect = 4e-04
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 13/100 (13%)
Query: 593 ESDSEYLTIPIVKGAMGFGFTIADSSHGQKVKKIL-----DRQRCKNLAEGDILIEINNL 647
+ I GF++ + ++ +R + G +IEIN
Sbjct: 293 CPPVTTVLIKRPDLKYQLGFSV----QNGIICSLMRGGIAERGG---VRVGHRIIEINGQ 345
Query: 648 NVRNMCHGEVVQVLKDCQRNLEANII-VQRSRLQHKKTSP 686
+V H ++VQ L + + + RL + +P
Sbjct: 346 SVVATAHEKIVQALSNSVGEIHMKTMPAAMFRLLTGQETP 385
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 108 bits (271), Expect = 4e-28
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+ ++ G GFSIRGG E + ++V + A +G L+VGD+I+ +N + +T
Sbjct: 14 LRRAKAHEGLGFSIRGGSEH-GVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVT 71
Query: 1096 HAEAIEIIRNGDSTVRLLIKRGGSVVAPT 1124
HAEA++ ++ V L + G + P+
Sbjct: 72 HAEAVKALKGSKKLV-LSVYSAGRISGPS 99
Score = 80.1 bits (198), Expect = 3e-18
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 820 VMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLN 879
++ + + G GF I GG+E G + + + PG A+ +G L GD+I+ V++ S+
Sbjct: 11 LVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLAR 69
Query: 880 SSHHHVVELMGKASVYGRVTLGIRRKVMPPAETT 913
+H V+ + + ++ L + ++
Sbjct: 70 VTHAEAVKALKGS---KKLVLSVYSAGRISGPSS 100
Score = 63.9 bits (156), Expect = 2e-12
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 920 PYDVTITR-RENEGFGFVIIS-SLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDI 977
V++ R + +EG GF I S + G + + S A++ G L +GD IL VN +
Sbjct: 9 VRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSL 67
Query: 978 MSLHHGEIVNLIKDSGYCVTL 998
+ H E V +K S V
Sbjct: 68 ARVTHAEAVKALKGSKKLVLS 88
Score = 62.0 bits (151), Expect = 6e-12
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 435 ERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCV 494
+ K+ GLGF+I GG + + V P A EG L+ GD ++ VNDK +
Sbjct: 10 RLVSLRRAKAHEGLGFSIRGGSEHGVGIY-VSLVEPGSLAEKEG-LRVGDQILRVNDKSL 67
Query: 495 LGYTHHDMVSVFQSISPGETVQLEVCRGYPLP 526
TH + V + + + L V +
Sbjct: 68 ARVTHAEAVKALKG---SKKLVLSVYSAGRIS 96
Score = 53.1 bits (128), Expect = 9e-09
Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Query: 593 ESDSEYLTIPIVKGAMGFGFTIA---DSSHGQKVKKILDRQRCKN--LAEGDILIEINNL 647
+ +++ K G GF+I + G V + + L GD ++ +N+
Sbjct: 6 SGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDK 65
Query: 648 NVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTS 685
++ + H E V+ LK + + + V + +S
Sbjct: 66 SLARVTHAEAVKALKGSK---KLVLSVYSAGRISGPSS 100
Score = 31.9 bits (73), Expect = 0.24
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 14 GGTHWQDKETPVTLTVPP-DGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKY-LEEKAI 71
G + + V+L L FS+ GGS+ G YV+ + + AEK L
Sbjct: 1 GSSGSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSL--AEKEGLRVGDQ 58
Query: 72 ILEIQGQKVAGYTRRDTIAWLNHCCRSGKTLTLRTVS 108
IL + + +A T + + L + K L L S
Sbjct: 59 ILRVNDKSLARVTHAEAVKAL----KGSKKLVLSVYS 91
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 107 bits (270), Expect = 5e-28
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 1040 RGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEA 1099
G +GF I GGR+F + + V ++ E G A L+ GD IV ING + +NM HAEA
Sbjct: 13 AGPAPWGFRISGGRDF-HTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEA 70
Query: 1100 IEIIRNGDSTVRLLIKRGGS 1119
IR S +RL + R
Sbjct: 71 QSKIRQSASPLRLQLDRSSG 90
Score = 77.0 bits (190), Expect = 3e-17
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 821 MVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNS 880
+ + +GFRI GG + + + + + G A+ L GD IV+++ S N
Sbjct: 7 GLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENM 65
Query: 881 SHHHVVELMGKASVYGRVTLGIRRKVMP 908
H + +++ + L + R P
Sbjct: 66 LHAEAQSKIRQSA--SPLRLQLDRSSGP 91
Score = 72.7 bits (179), Expect = 9e-16
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 923 VTITRRENEGFGFVII-SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
+T+ +GF I + ++ E A+ + L GD I+A+N ++
Sbjct: 8 LTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENML 66
Query: 982 HGEIVNLIKDSGYCVTLTI---GAPISG 1006
H E + I+ S + L + P SG
Sbjct: 67 HAEAQSKIRQSASPLRLQLDRSSGPSSG 94
Score = 62.3 bits (152), Expect = 4e-12
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
GF I GG D + + V G A L+ GD++V +N + H + S
Sbjct: 17 PWGFRISGGRDFHTP-IIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKI 74
Query: 507 QSISPGETVQLEVCRG 522
+ ++L++ R
Sbjct: 75 RQS--ASPLRLQLDRS 88
Score = 56.9 bits (138), Expect = 3e-10
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 594 SDSEYLTIPIVKGAMGFGFTI---ADSSHGQKVKKILDRQR--CKNLAEGDILIEINNLN 648
S S LT+ V G +GF I D V K+ +R + +L GDI++ IN +
Sbjct: 3 SGSSGLTV-DVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQS 61
Query: 649 VRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
NM H E ++ L + + RS
Sbjct: 62 AENMLHAEAQSKIRQSASPLR--LQLDRSS 89
Score = 34.6 bits (80), Expect = 0.026
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 19 QDKETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQ 78
+ +T+ V F + GG D VT + + K L II+ I GQ
Sbjct: 2 SSGSSGLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERG-KAEAADLRPGDIIVAINGQ 60
Query: 79 KVAGYTRRDTIAWLNHCCRSGKTLTL 104
+ + + +S L L
Sbjct: 61 SAENMLHAEAQSKI---RQSASPLRL 83
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil,
deafness, hearing, non-syndromic deafness, polymorphism;
2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 111 bits (278), Expect = 5e-28
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 8/149 (5%)
Query: 975 VDIMSLHHG--EIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSAASHREYEEGGEHDEQ 1032
D++ ++H ++ L+ D + P+ + + +
Sbjct: 27 YDVLRMYHQTMDVAVLVGDLKLVINEPSRLPLFDAIRPLIPLKHQVEYDQL--TPRRSRK 84
Query: 1033 YHAIELSR-GTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
+ L R G G S+RGG EF LF+ + + G A G L+VGDEIV ING +
Sbjct: 85 LKEVRLDRLHPEGLGLSVRGGLEF-GCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSI 142
Query: 1092 KNMTHAEAIEIIRNGDSTVRLLIKRGGSV 1120
+ TH E I +IR TV + ++ G +
Sbjct: 143 SSCTHEEVINLIRTEK-TVSIKVRHIGLI 170
Score = 87.7 bits (217), Expect = 8e-20
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 9/128 (7%)
Query: 788 PLPSNDMRYIPPDNLGLPRVRPTNIKSVEYSDVMVITLLRQEN-GFGFRIVGGTEEGSQV 846
PL IP +V + + + L R G G + GG E G +
Sbjct: 57 PLFDAIRPLIPLK----HQVEYDQLTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGL 112
Query: 847 SIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKV 906
I H++ GG AD G L GDEIV ++ S+ + +H V+ L+ + V++ +R
Sbjct: 113 FISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLI-RTE--KTVSIKVRHIG 168
Query: 907 MPPAETTS 914
+ P +++
Sbjct: 169 LIPVKSSP 176
Score = 72.3 bits (177), Expect = 1e-14
Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 27/154 (17%)
Query: 872 VDNLSVLNSSHHHVVELM--GKASVYGRVTLGIRRKVMP--------------------- 908
VD L ++ ++ +++ ++ V +G + V+
Sbjct: 13 VDFLIENDAEKDYLYDVLRMYHQTMDVAVLVGDLKLVINEPSRLPLFDAIRPLIPLKHQV 72
Query: 909 -PAETTSMMLGYPYDVTITRRENEGFGFVIIS-SLNKAGSTIGRIIEDSPADRSGELHLG 966
+ T +V + R EG G + G I +I+ AD G L +G
Sbjct: 73 EYDQLTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVG-LQVG 131
Query: 967 DHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
D I+ +N I S H E++NLI+ V++ +
Sbjct: 132 DEIVRINGYSISSCTHEEVINLIRTEKT-VSIKV 164
Score = 67.3 bits (164), Expect = 1e-12
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 446 RGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
GLG ++ GG + I ++ G A G LQ GD +V +N + TH +++++
Sbjct: 96 EGLGLSVRGGLEFGCGLF-ISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINL 153
Query: 506 FQSISPGETVQLEVCRGYPLPF--DPNDPNT 534
++ +TV ++V +P P++P T
Sbjct: 154 IRT---EKTVSIKVRHIGLIPVKSSPDEPLT 181
Score = 52.3 bits (125), Expect = 1e-07
Identities = 18/111 (16%), Positives = 42/111 (37%), Gaps = 11/111 (9%)
Query: 583 ERPSSTDLILESDSEYLTIPIVK-GAMGFGFTI---ADSSHGQKVKKILDRQ---RCKNL 635
+ L + + + + G G ++ + G + ++ L
Sbjct: 70 HQVEYDQLTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSV-GL 128
Query: 636 AEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSP 686
GD ++ IN ++ + H EV+ +++ + +I V+ L K+SP
Sbjct: 129 QVGDEIVRINGYSISSCTHEEVINLIRTEK---TVSIKVRHIGLIPVKSSP 176
Score = 36.1 bits (83), Expect = 0.030
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGYT 84
V L L SV GG + G +++++ K + L+ I+ I G ++ T
Sbjct: 88 VRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGG-QADSVGLQVGDEIVRINGYSISSCT 146
Query: 85 RRDTIAWLNHCCRSGKTLTL 104
+ I + R+ KT+++
Sbjct: 147 HEEVINLI----RTEKTVSI 162
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density,
glutametergic receptors, carbohydrate metabolism, cycle,
cell division; HET: MES; 1.85A {Rattus norvegicus} PDB:
3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 110 bits (275), Expect = 7e-28
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 1007 DDASSTTSVSAASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGRE-----FQNMALF 1061
D + AAS E + +EL + + G G SI G + + +F
Sbjct: 55 DRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIF 114
Query: 1062 VLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
V + E G A DG ++V D +VE++G + +T + A ++RN VR +I R
Sbjct: 115 VKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR 169
Score = 83.1 bits (205), Expect = 2e-18
Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 12/139 (8%)
Query: 777 RKESTSFEHEQPLPSNDMRYIPPDNLGLPRVRPTN----IKSVEYSDVMVITLLRQENGF 832
RK S Q + N + + + K VE ++ + L + G
Sbjct: 34 RKIHFSTAPIQVFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGL 93
Query: 833 GFRIVGGTEEGSQVS------IGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVV 886
G I+G + + GGAA DGR+ D +V VD S++ +
Sbjct: 94 GISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAA 153
Query: 887 ELMGKASVYGRVTLGIRRK 905
++ GRV I R+
Sbjct: 154 SVLRNTK--GRVRFMIGRE 170
Score = 79.2 bits (195), Expect = 3e-17
Identities = 39/191 (20%), Positives = 65/191 (34%), Gaps = 30/191 (15%)
Query: 336 DCSDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQAKHRDQGAGPSEMDDNEHKVK 395
D D E PY E + ++ E+P K A ++
Sbjct: 4 DEEDGEPPYEPE---------SGCVEIPGLSEEEDPAPSRKIHFSTAPIQVFSTYSNEDY 54
Query: 396 DSPGKRIAPQARNTLVSTSNRSNNDENYFFTLNPDELIGERIHSSLVKSLRGLGFTIVGG 455
D + + P A + R E + L D GLG +I+G
Sbjct: 55 DRRNEDVDPMAASAEYELEKRVERLELFPVELEKDS--------------EGLGISIIGM 100
Query: 456 DDSKEEFLQ-----IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSIS 510
+ L+ +K+V G A +G +Q D+LV V+ ++G T SV ++
Sbjct: 101 GAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNT- 159
Query: 511 PGETVQLEVCR 521
V+ + R
Sbjct: 160 -KGRVRFMIGR 169
Score = 66.5 bits (162), Expect = 1e-12
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 921 YDVTITRRENEGFGFVII-------SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVN 973
+ V + +++EG G II L K G + + E A R G + + D ++ V+
Sbjct: 82 FPVEL-EKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVD 140
Query: 974 HVDIMSLHHGEIVNLIKDSGYCVTLTIG 1001
++ + ++++++ V IG
Sbjct: 141 GTSLVGVTQSFAASVLRNTKGRVRFMIG 168
Score = 52.6 bits (126), Expect = 5e-08
Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 15/107 (14%)
Query: 571 PDLYTSEKMVKLERPSSTDLILES---DSEYLTIPIVKGAMGFGFTIADSSHGQK----- 622
+ Y +S + LE E + + K + G G +I G
Sbjct: 51 NEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGADMGLEK 110
Query: 623 ----VKKILDR---QRCKNLAEGDILIEINNLNVRNMCHGEVVQVLK 662
VK + + R + D+L+E++ ++ + VL+
Sbjct: 111 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR 157
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 107 bits (270), Expect = 7e-28
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 1029 HDEQYHAIELSRG-TRGFGFSIRGGREFQ--------NMALFVLQIAENGPAALDGHLKV 1079
Q +EL R ++ G SI GGR +F+ + E+ PA +G LK
Sbjct: 1 QSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKP 60
Query: 1080 GDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
GD IVE++G++ ++ +H +A+E IR + V +++
Sbjct: 61 GDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 97
Score = 86.3 bits (214), Expect = 2e-20
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 920 PYDVTITRRENEGFGFVII----------SSLNKAGSTIGRIIEDSPADRSGELHLGDHI 969
P V + R ++ G I+ + G I ++EDSPA ++G L GD I
Sbjct: 5 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 64
Query: 970 LAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPIS 1005
+ V+ +D+ H + V I+ +G V + + IS
Sbjct: 65 VEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 100
Score = 80.9 bits (200), Expect = 2e-18
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Query: 822 VITLLRQEN-GFGFRIVGGTEEGSQVS---------IGHIVPGGAADLDGRLCTGDEIVS 871
+ L R+ + G IVGG GS++S I H++ A +G L GD IV
Sbjct: 7 RVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVE 66
Query: 872 VDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKV 906
VD + + ++SH VE + KA V ++ +
Sbjct: 67 VDGMDLRDASHEQAVEAIRKAG--NPVVFMVQSII 99
Score = 73.5 bits (181), Expect = 7e-16
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 10/89 (11%)
Query: 447 GLGFTIVGGDDSKEEFLQ--------IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYT 498
LG +IVGG IK V+ + PA G L+ GD +V V+ + +
Sbjct: 17 SLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDAS 76
Query: 499 HHDMVSVFQSISPGETVQLEVCRGYPLPF 527
H V + G V V
Sbjct: 77 HEQAVEAIR--KAGNPVVFMVQSIISTRL 103
Score = 52.4 bits (126), Expect = 2e-08
Identities = 14/96 (14%), Positives = 38/96 (39%), Gaps = 18/96 (18%)
Query: 597 EYLTIPIVKG-AMGFGFTIA------------DSSHGQKVKKILDR---QRCKNLAEGDI 640
+ + + + + G +I + G +K +L+ + L GD
Sbjct: 4 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 63
Query: 641 LIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQR 676
++E++ +++R+ H + V+ ++ +VQ
Sbjct: 64 IVEVDGMDLRDASHEQAVEAIRKAGN--PVVFMVQS 97
Score = 29.2 bits (66), Expect = 1.9
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFA---------YVTNINKEKVKGAEKYLEEKAIILEI 75
V L P SL S+ GG G ++ ++ ++ G L+ I+E+
Sbjct: 8 VELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEV 67
Query: 76 QGQKVAGYTRRDTIAWLNHCCRSGKTLTL 104
G + + + + ++G +
Sbjct: 68 DGMDLRDASHEQAVEAIR---KAGNPVVF 93
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 106 bits (267), Expect = 9e-28
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+ L+ +GF ++GG++F NM L + +I AA L GD +V I+G+NT MT
Sbjct: 5 VTLTGPG-PWGFRLQGGKDF-NMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMT 61
Query: 1096 HAEAIEIIRNGDSTVRLLIKRGG 1118
H EA I++ + L +++
Sbjct: 62 HLEAQNKIKSASYNLSLTLQKSK 84
Score = 74.6 bits (184), Expect = 2e-16
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 821 MVITL-LRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLN 879
M ++ L +GFR+ GG + ++I I PG A +L GD +V++D ++
Sbjct: 1 MAYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAA-QSQLSQGDLVVAIDGVNTDT 59
Query: 880 SSHHHVVELMGKASVYGRVTLGIRR 904
+H + AS ++L +++
Sbjct: 60 MTHLEAQNKIKSAS--YNLSLTLQK 82
Score = 67.7 bits (166), Expect = 4e-14
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 924 TITRRENEGFGFVIISSL-NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHH 982
++T +GF + TI RI S A +S L GD ++A++ V+ ++ H
Sbjct: 4 SVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTH 62
Query: 983 GEIVNLIKDSGYCVTLTI 1000
E N IK + Y ++LT+
Sbjct: 63 LEAQNKIKSASYNLSLTL 80
Score = 60.7 bits (148), Expect = 1e-11
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 446 RGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
GF + GG D L I + P AA L GD++V ++ TH + +
Sbjct: 11 GPWGFRLQGGKDFNMP-LTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNK 68
Query: 506 FQSISPGETVQLEVCRG 522
+S + L + +
Sbjct: 69 IKSA--SYNLSLTLQKS 83
Score = 54.6 bits (132), Expect = 2e-09
Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 599 LTIPIVKGAMGFGFTI---ADSSHGQKVKKILDRQR--CKNLAEGDILIEINNLNVRNMC 653
++ + +GF + D + + +I + L++GD+++ I+ +N M
Sbjct: 3 YSVTLTGPG-PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMT 61
Query: 654 HGEVVQVLKDCQRNLEANIIVQRSR 678
H E +K NL + +Q+S+
Sbjct: 62 HLEAQNKIKSASYNLS--LTLQKSK 84
Score = 35.3 bits (82), Expect = 0.010
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 24 PVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGY 83
++T+ G F + GG D ++ I K A+ L + +++ I G
Sbjct: 2 AYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGS-KAAQSQLSQGDLVVAIDGVNTDTM 60
Query: 84 TRRDTIAWLNHCCRSGKTLTL 104
T + + + L+L
Sbjct: 61 THLEAQNKI---KSASYNLSL 78
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 106 bits (267), Expect = 1e-27
Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 1040 RGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEA 1099
G +GF ++GG++F NM L + + + G AA ++++GD ++ I+GIN + MTH EA
Sbjct: 10 VGPAPWGFRLQGGKDF-NMPLTISSLKDGGKAA-QANVRIGDVVLSIDGINAQGMTHLEA 67
Query: 1100 IEIIRNGDSTVRLLIKRGGSV 1120
I+ ++ + ++R +
Sbjct: 68 QNKIKGCTGSLNMTLQRESDL 88
Score = 75.8 bits (187), Expect = 7e-17
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 826 LRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHV 885
L +GFR+ GG + ++I + GG A + GD ++S+D ++ +H
Sbjct: 9 LVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAA-QANVRIGDVVLSIDGINAQGMTHLEA 67
Query: 886 VELMGKASVYGRVTLGIRRK 905
+ + G + + ++R+
Sbjct: 68 QNKIKGCT--GSLNMTLQRE 85
Score = 69.2 bits (170), Expect = 2e-14
Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 922 DVTITRRENEGFGFVIIS-SLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSL 980
+ +++ +GF + TI + + A ++ + +GD +L+++ ++ +
Sbjct: 4 NYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGM 62
Query: 981 HHGEIVNLIKDSGYCVTLTI 1000
H E N IK + +T+
Sbjct: 63 THLEAQNKIKGCTGSLNMTL 82
Score = 63.4 bits (155), Expect = 2e-12
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 446 RGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
GF + GG D L I S+ G AA ++ GDV++ ++ G TH + +
Sbjct: 13 APWGFRLQGGKDFNMP-LTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNK 70
Query: 506 FQSISPGETVQLEVCRGYPL 525
+ ++ + + R L
Sbjct: 71 IKGC--TGSLNMTLQRESDL 88
Score = 55.4 bits (134), Expect = 9e-10
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 604 VKGAMGFGFTI---ADSSHGQKVKKILDRQ--RCKNLAEGDILIEINNLNVRNMCHGEVV 658
+ G +GF + D + + + D N+ GD+++ I+ +N + M H E
Sbjct: 9 LVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQ 68
Query: 659 QVLKDCQRNLEANIIVQRS 677
+K C +L + +QR
Sbjct: 69 NKIKGCTGSLN--MTLQRE 85
Score = 34.2 bits (79), Expect = 0.030
Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGYT 84
++++ F + GG D ++++ K A+ + ++L I G G T
Sbjct: 5 YSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGG-KAAQANVRIGDVVLSIDGINAQGMT 63
Query: 85 RRDTIAWLNHCCRSGKTLTL 104
+ + +L +
Sbjct: 64 HLEAQNKIK---GCTGSLNM 80
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 107 bits (269), Expect = 1e-27
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 1036 IELSRGTRGF-GFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNM 1094
+ L + + G SI GG + L+++Q+ +N PAALDG + GDEI +NG + K
Sbjct: 28 VTLQKDAQNLIGISIGGGAQ-YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGK 86
Query: 1095 THAEAIEIIRNGDSTVRLLIKR 1116
T E ++I+ V + +
Sbjct: 87 TKVEVAKMIQEVKGEVTIHYNK 108
Score = 86.0 bits (213), Expect = 4e-20
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 816 EYSDVMVITLLRQENGF-GFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDN 874
+ +TL + G I GG + + I + A LDG + GDEI V+
Sbjct: 21 QSMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNG 80
Query: 875 LSVLNSSHHHVVELMGKASVYGRVTLGIRR 904
S+ + V +++ + G VT+ +
Sbjct: 81 RSIKGKTKVEVAKMIQEVK--GEVTIHYNK 108
Score = 80.6 bits (199), Expect = 3e-18
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
+G +I GG L I V N PAAL+G + GD + VN + + G T ++ +
Sbjct: 37 LIGISIGGGAQYCP-CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMI 95
Query: 507 QSISPGETVQLEVCRGYPL 525
Q + V + +
Sbjct: 96 QEV--KGEVTIHYNKLQYY 112
Score = 74.8 bits (184), Expect = 4e-16
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 1/99 (1%)
Query: 904 RKVMPPAETTSMMLGYPYDVTITRRENEGFGFVII-SSLNKAGSTIGRIIEDSPADRSGE 962
V E P VT+ + G I + I ++ +++PA G
Sbjct: 9 SGVDLGTENLYFQSMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGT 68
Query: 963 LHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIG 1001
+ GD I VN I E+ +I++ VT+
Sbjct: 69 VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYN 107
Score = 52.5 bits (126), Expect = 2e-08
Identities = 17/105 (16%), Positives = 43/105 (40%), Gaps = 12/105 (11%)
Query: 586 SSTDLILESDSEYLTIPIVKGAMGF-GFTI---ADSSHGQKVKKILDRQ---RCKNLAEG 638
+ +L +S + + K A G +I A + ++ D +A G
Sbjct: 14 GTENLYFQSMVPG-KVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAG 72
Query: 639 DILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKK 683
D + +N +++ EV ++++ ++ + + ++LQ+ K
Sbjct: 73 DEITGVNGRSIKGKTKVEVAKMIQ----EVKGEVTIHYNKLQYYK 113
Score = 41.7 bits (98), Expect = 1e-04
Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGYT 84
VTL + S+GGG+ Y+ + + + I + G+ + G T
Sbjct: 28 VTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKT 87
Query: 85 RRDTIAWLNHCCRSGKTLTLR 105
+ + + +T+
Sbjct: 88 KVEVAKMIQ---EVKGEVTIH 105
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 106 bits (267), Expect = 1e-27
Identities = 23/86 (26%), Positives = 34/86 (39%)
Query: 1027 GEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEI 1086
G + + + G +I GG + ++ I G A G LKVG I+E+
Sbjct: 1 GSSGSSGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEV 60
Query: 1087 NGINTKNMTHAEAIEIIRNGDSTVRL 1112
NG+ + H EA II T
Sbjct: 61 NGLTLRGKEHREAARIIAEAFKTKDR 86
Score = 80.9 bits (200), Expect = 1e-18
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
+ KS LG I GG ++++ +I ++ G A G L+ G V++ VN + G H
Sbjct: 12 VKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHR 71
Query: 501 DMVSVFQSISPG---ETVQLEVCRGYPLP 526
+ + + + V P
Sbjct: 72 EAARIIAEAFKTKDRDYIDFLVTEFNSGP 100
Score = 77.8 bits (192), Expect = 2e-17
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 4/96 (4%)
Query: 818 SDVMVITLLRQENGFGFRIVGGTE-EGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLS 876
S ++ + + G I GG I I GG+A G+L G I+ V+ L+
Sbjct: 5 SSGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLT 64
Query: 877 VLNSSHHHVVELM---GKASVYGRVTLGIRRKVMPP 909
+ H ++ K + + P
Sbjct: 65 LRGKEHREAARIIAEAFKTKDRDYIDFLVTEFNSGP 100
Score = 67.8 bits (166), Expect = 7e-14
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 2/85 (2%)
Query: 916 MLGYPYDVTITRRENEGFGFVII--SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVN 973
G + ++ G I ++ + I I A G+L +G IL VN
Sbjct: 2 SSGSSGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVN 61
Query: 974 HVDIMSLHHGEIVNLIKDSGYCVTL 998
+ + H E +I ++
Sbjct: 62 GLTLRGKEHREAARIIAEAFKTKDR 86
Score = 59.0 bits (143), Expect = 9e-11
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 594 SDSEYLTIPIVKGAMGFGFTIA---DSSHGQ-KVKKILDRQ---RCKNLAEGDILIEINN 646
S S + + K A G I ++ ++ I C L G +++E+N
Sbjct: 3 SGSSGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNG 62
Query: 647 LNVRNMCHGEVVQVLKDCQRNLEANII 673
L +R H E +++ + + + + I
Sbjct: 63 LTLRGKEHREAARIIAEAFKTKDRDYI 89
Score = 32.0 bits (73), Expect = 0.24
Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 25 VTLTVPPDGSLNFSVGGGSDS-GEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGY 83
+ +L ++ GG+++ + I + L+ +ILE+ G + G
Sbjct: 9 LVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGK 68
Query: 84 TRRDTIAWLNHCCRSGKTLTLRTVS 108
R+ + + KT +
Sbjct: 69 EHREAARIIA---EAFKTKDRDYID 90
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 106 bits (266), Expect = 2e-27
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 1031 EQYHAIELSR-GTRGFGFSIRGGRE-----FQNMALFVLQIAENGPAALDGHLKVGDEIV 1084
E H + L + G + FG I G + +F+ I + PA L G LKVGD I+
Sbjct: 4 ELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRIL 63
Query: 1085 EINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+NG + +N T I++I+ D + L I+
Sbjct: 64 SLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95
Score = 98.5 bits (246), Expect = 1e-24
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 921 YDVTITRRENEGFGFVII-------SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVN 973
+ VT+ + + FG I+ + G I I+ DSPA G L +GD IL++N
Sbjct: 7 HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN 66
Query: 974 HVDIMSLHHGEIVNLIKDSGYCVTLTIGAP 1003
D+ + +++LIK++ + + L I
Sbjct: 67 GKDVRNSTEQAVIDLIKEADFKIELEIQTF 96
Score = 85.4 bits (212), Expect = 4e-20
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 820 VMVITLLRQEN-GFGFRIVGGTEEGSQVS------IGHIVPGGAADLDGRLCTGDEIVSV 872
+ ++TL + FG IV G + S + I IVP A L GRL GD I+S+
Sbjct: 6 IHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 65
Query: 873 DNLSVLNSSHHHVVELMGKASVYGRVTLGIRR 904
+ V NS+ V++L+ +A ++ L I+
Sbjct: 66 NGKDVRNSTEQAVIDLIKEAD--FKIELEIQT 95
Score = 75.0 bits (185), Expect = 2e-16
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 432 LIGERIHS-SLVKS-LRGLGFTIVGGDDSKEEFLQ-----IKSVVPNGPAALEGHLQTGD 484
+ GE IH +L K+ + G IV G+ + IK +VP+ PA L G L+ GD
Sbjct: 1 MAGELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGD 60
Query: 485 VLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
++ +N K V T ++ + + ++LE+
Sbjct: 61 RILSLNGKDVRNSTEQAVIDLIK--EADFKIELEIQT 95
Score = 54.6 bits (132), Expect = 2e-09
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 15/95 (15%)
Query: 597 EYLTIPIVK-GAMGFGFTIADSSHGQK---------VKKILDR---QRCKNLAEGDILIE 643
+ + K G FG I +K I+ C L GD ++
Sbjct: 5 LIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILS 64
Query: 644 INNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
+N +VRN V+ ++K+ + + +Q
Sbjct: 65 LNGKDVRNSTEQAVIDLIKEADF--KIELEIQTFD 97
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 106 bits (266), Expect = 3e-27
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 1036 IELSRGTRGFGFSIRGGRE----FQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
+ + T G SI G R+ + ++V + AALDG ++ D+I+ ++ +N
Sbjct: 18 LFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNV 77
Query: 1092 KNMTHAEAIEIIRNGDSTVRLLIKR 1116
+ M ++ +E++RN + VRLL+ R
Sbjct: 78 QGMAQSDVVEVLRNAGNPVRLLLIR 102
Score = 83.2 bits (206), Expect = 3e-19
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 820 VMVITLLRQENGFGFRIVGGTE-----EGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDN 874
+ + + + G I G + E + + + ++PG AA LDGR+ D+I+ VD+
Sbjct: 15 SVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDD 74
Query: 875 LSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAE 911
++V + VVE++ A V L + R++ P E
Sbjct: 75 VNVQGMAQSDVVEVLRNAG--NPVRLLLIRRL-PLLE 108
Score = 83.2 bits (206), Expect = 3e-19
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQ----IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
K LG +I G D +KS++P AAL+G ++ D ++ V+D V G
Sbjct: 20 REKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQG 79
Query: 497 YTHHDMVSVFQSISPGETVQLEVCRGYPLP 526
D+V V + + G V+L + R PL
Sbjct: 80 MAQSDVVEVLR--NAGNPVRLLLIRRLPLL 107
Score = 69.3 bits (170), Expect = 2e-14
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 921 YDVTITR-RENEGFGFVII------SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVN 973
Y V + R ++ G I ++ G + +I S A G + D IL V+
Sbjct: 14 YSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVD 73
Query: 974 HVDIMSLHHGEIVNLIKDSGYCVTLTIG 1001
V++ + ++V +++++G V L +
Sbjct: 74 DVNVQGMAQSDVVEVLRNAGNPVRLLLI 101
Score = 55.4 bits (134), Expect = 2e-09
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 587 STDLILESDSEYLTIPIV--KGAMGFGFTIA---DSSHGQK-----VKKILDR---QRCK 633
S S ++ + K G +I+ D S + VK ++
Sbjct: 2 SHGYSDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDG 61
Query: 634 NLAEGDILIEINNLNVRNMCHGEVVQVLK 662
+ D ++ ++++NV+ M +VV+VL+
Sbjct: 62 RIEPNDKILRVDDVNVQGMAQSDVVEVLR 90
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural genomics;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 105 bits (265), Expect = 3e-27
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 1040 RGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEA 1099
G +GF + GG +F N L + +I AA L GD I+ I+G T++MTHA+A
Sbjct: 12 PGPAPWGFRLSGGIDF-NQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADA 69
Query: 1100 IEIIRNGDSTVRLLIKRGGSVVAPTDNAAG 1129
+ I+ + L I R + + ++G
Sbjct: 70 QDRIKAASYQLCLKIDRAETRLWSPQVSSG 99
Score = 75.5 bits (186), Expect = 1e-16
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 826 LRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHV 885
L +GFR+ GG + + I I PG A LC GD I+++D + +H
Sbjct: 11 LPGPAPWGFRLSGGIDFNQPLVITRITPGSKAA-AANLCPGDVILAIDGFGTESMTHADA 69
Query: 886 VELMGKASVYGRVTLGIRRK 905
+ + AS ++ L I R
Sbjct: 70 QDRIKAAS--YQLCLKIDRA 87
Score = 68.2 bits (167), Expect = 4e-14
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 923 VTITRRENEGFGFVIISSL-NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
+ +GF + + I RI S A + L GD ILA++ S+
Sbjct: 7 GNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMT 65
Query: 982 HGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSAAS 1019
H + + IK + Y + L I + + VS+
Sbjct: 66 HADAQDRIKAASYQLCLKID---RAETRLWSPQVSSGP 100
Score = 63.9 bits (156), Expect = 2e-12
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 446 RGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
GF + GG D + L I + P AA L GDV++ ++ TH D
Sbjct: 15 APWGFRLSGGIDFNQP-LVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDR 72
Query: 506 FQSISPGETVQLEVCRGYPLPFDPNDPNT 534
+ + + L++ R + P +
Sbjct: 73 IK--AASYQLCLKIDRAETRLWSPQVSSG 99
Score = 59.3 bits (144), Expect = 6e-11
Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 11/106 (10%)
Query: 594 SDSEYLTIPIVKGAMGFGFTI---ADSSHGQKVKKILDRQ--RCKNLAEGDILIEINNLN 648
S + ++ G +GF + D + + +I NL GD+++ I+
Sbjct: 2 SSGSSGNV-VLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFG 60
Query: 649 VRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKTPT 694
+M H + +K L + + R+ + P S P+
Sbjct: 61 TESMTHADAQDRIKAASYQLC--LKIDRA---ETRLWSPQVSSGPS 101
Score = 32.3 bits (74), Expect = 0.17
Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Query: 20 DKETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQK 79
+ + +P F + GG D + +T I K A L +IL I G
Sbjct: 2 SSGSSGNVVLPGPAPWGFRLSGGIDFNQPLVITRIT-PGSKAAAANLCPGDVILAIDGFG 60
Query: 80 VAGYTRRDTIAWLNHCCRSGKTLTL 104
T D + + L L
Sbjct: 61 TESMTHADAQDRI---KAASYQLCL 82
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 105 bits (265), Expect = 3e-27
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 434 GERIHSSLVKSLRGLGFTIVGGDDSK---EEFLQIKSVVPNGPAALEGHLQTGDVLVYVN 490
E LVK +GLGF+I+ D + I+S+V +G A G L GD LV VN
Sbjct: 14 PEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVN 73
Query: 491 DKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
+ C+ + + V + +++ PG V L +C G
Sbjct: 74 EYCLDNTSLAEAVEILKAVPPG-LVHLGICSG 104
Score = 97.1 bits (242), Expect = 4e-24
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 1036 IELSRGTRGFGFSIRGGRE---FQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTK 1092
+EL + +G GFSI ++ + + + +G A G L GD +V +N
Sbjct: 19 VELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLD 78
Query: 1093 NMTHAEAIEIIRN-GDSTVRLLIKRG 1117
N + AEA+EI++ V L I G
Sbjct: 79 NTSLAEAVEILKAVPPGLVHLGICSG 104
Score = 92.8 bits (231), Expect = 1e-22
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 818 SDVMVITLLRQENGFGFRIVGGTEEGSQ----VSIGHIVPGGAADLDGRLCTGDEIVSVD 873
+V ++ L++ G GF I+ + + I +V G A+ G L GD +VSV+
Sbjct: 14 PEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVN 73
Query: 874 NLSVLNSSHHHVVELMGKASVYGRVTLGIRR 904
+ N+S VE++ KA G V LGI
Sbjct: 74 EYCLDNTSLAEAVEIL-KAVPPGLVHLGICS 103
Score = 63.6 bits (155), Expect = 3e-12
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 910 AETTSMMLGYPYDVTITRRENEGFGFVII-----SSLNKAGSTIGRIIEDSPADRSGELH 964
+ ++ V + + + +G GF I+ ++ I ++ D A+RSG L
Sbjct: 6 SGELALWSPEVKIVELVK-DCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLL 64
Query: 965 LGDHILAVNHVDIMSLHHGEIVNLIKDSGY-CVTLTIG-APISG 1006
GD +++VN + + E V ++K V L I P SG
Sbjct: 65 PGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGPSSG 108
Score = 58.6 bits (142), Expect = 1e-10
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 585 PSSTDLILESDSEYLTIPIVKGAMGFGFTIA---DSSHGQK----VKKILDR---QRCKN 634
S+ + E + +VK G GF+I D + ++ ++ +R
Sbjct: 3 SGSSGELALWSPEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGG 62
Query: 635 LAEGDILIEINNLNVRNMCHGEVVQVLK 662
L GD L+ +N + N E V++LK
Sbjct: 63 LLPGDRLVSVNEYCLDNTSLAEAVEILK 90
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 105 bits (265), Expect = 4e-27
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 1027 GEHDEQYHAIELSRGT-RGFGFSIRGGREFQ--------NMALFVLQIAENGPAALDGHL 1077
G + + + G SIRGG + +F+ +++ G A DG L
Sbjct: 4 GSSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRL 63
Query: 1078 KVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRG 1117
+VG ++E+N + +TH EA++++R+ T+ +L+ G
Sbjct: 64 RVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDG 103
Score = 80.1 bits (198), Expect = 4e-18
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 10/89 (11%)
Query: 446 RGLGFTIVGGDDSKEEFLQ--------IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGY 497
LG +I GG + I V P G A +G L+ G L+ VN + +LG
Sbjct: 21 ERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGL 80
Query: 498 THHDMVSVFQSISPGETVQLEVCRGYPLP 526
TH + V + +S+ G+T+ + VC G+
Sbjct: 81 THGEAVQLLRSV--GDTLTVLVCDGFESG 107
Score = 78.6 bits (194), Expect = 2e-17
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 819 DVMVITLLRQEN-GFGFRIVGGTEEGSQVS---------IGHIVPGGAADLDGRLCTGDE 868
+ + + + G I GG + I + P GAA DGRL G
Sbjct: 9 GLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLR 68
Query: 869 IVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAET 912
++ V+ S+L +H V+L+ +T+ + +
Sbjct: 69 LLEVNQQSLLGLTHGEAVQLLRSVG--DTLTVLVCDGFESGPSS 110
Score = 71.2 bits (175), Expect = 6e-15
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 921 YDVTITRRENEGFGFVII----------SSLNKAGSTIGRIIEDSPADRSGELHLGDHIL 970
++ I + E G I G I ++ A R G L +G +L
Sbjct: 11 RELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLL 70
Query: 971 AVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
VN ++ L HGE V L++ G +T+ +
Sbjct: 71 EVNQQSLLGLTHGEAVQLLRSVGDTLTVLV 100
Score = 52.8 bits (127), Expect = 1e-08
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 18/101 (17%)
Query: 594 SDSEYLTIPIVKG-AMGFGFTIA---DSSHGQK---------VKKILDR---QRCKNLAE 637
S + I K G +I G + K+ R L
Sbjct: 6 SGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRV 65
Query: 638 GDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
G L+E+N ++ + HGE VQ+L+ ++V
Sbjct: 66 GLRLLEVNQQSLLGLTHGEAVQLLRSVGD--TLTVLVCDGF 104
Score = 30.8 bits (70), Expect = 0.67
Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 14/102 (13%)
Query: 12 TAGGTHWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFA---------YVTNINKEKVKGA 62
++G + +E + + P L S+ GG+ +++ ++ G
Sbjct: 2 SSGSSGPGLRE--LCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGR 59
Query: 63 EKYLEEKAIILEIQGQKVAGYTRRDTIAWLNHCCRSGKTLTL 104
+ L +LE+ Q + G T + + L G TLT+
Sbjct: 60 DGRLRVGLRLLEVNQQSLLGLTHGEAVQLLR---SVGDTLTV 98
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 105 bits (265), Expect = 5e-27
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 1009 ASSTTSVSAASHREYEEGGEHDEQYHAIELSRG-TRGFGFSIRGGREFQ--NMALFVLQI 1065
+S ++ + + Q I++ R T G GFS+ R + +FV +
Sbjct: 2 SSGSSGLGNEDFNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDV 61
Query: 1066 AENGPAALDGHLKVGDEIVEINGIN-TKNMTHAEAIEIIRNGDSTVRLLIKRG 1117
A D LK D+I+ IN +N++H +AI +++ ++RL++ R
Sbjct: 62 QPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVARE 114
Score = 82.9 bits (205), Expect = 6e-19
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 818 SDVMVITLLRQEN-GFGFRIVGGTEEGSQ---VSIGHIVPGGAADLDGRLCTGDEIVSVD 873
+ I + R G GF +V + + + + PG AD D RL D+I++++
Sbjct: 24 RQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAIN 83
Query: 874 NLSVL-NSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTS 914
+ + N SH + L+ + + G + L + R+ + +TS
Sbjct: 84 HTPLDQNISHQQAIALLQQTT--GSLRLIVAREPVHTKSSTS 123
Score = 75.2 bits (185), Expect = 4e-16
Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 6/119 (5%)
Query: 412 STSNRSNNDENYFFTLNPDELIGERIHSSLVK-SLRGLGFTIVGGDDSKEEFLQI--KSV 468
S+ + +E++ + + + + + S GLGF++V + I K V
Sbjct: 2 SSGSSGLGNEDFNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDV 61
Query: 469 VPNGPAALEGHLQTGDVLVYVNDKCVL-GYTHHDMVSVFQSISPGETVQLEVCRGYPLP 526
P A + L+ D ++ +N + +H +++ Q +++L V R
Sbjct: 62 QPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQT--TGSLRLIVAREPVHT 118
Score = 74.0 bits (182), Expect = 8e-16
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 923 VTITRRENEGFGFVII----SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIM 978
+ I R G GF ++ +L K + + S ADR L D ILA+NH +
Sbjct: 29 IDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLD 88
Query: 979 S-LHHGEIVNLIKDSGYCVTLTIG--APISGDDASSTTS 1014
+ H + + L++ + + L + + S +S
Sbjct: 89 QNISHQQAIALLQQTTGSLRLIVAREPVHTKSSTSGPSS 127
Score = 57.1 bits (138), Expect = 8e-10
Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 13/119 (10%)
Query: 583 ERPSSTDLILESDSEYLTIPIVKGA-MGFGFTIA---DSSHGQK---VKKILDR---QRC 632
E +S + + I I + + G GF++ + G+ VK + R
Sbjct: 11 EDFNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRD 70
Query: 633 KNLAEGDILIEINNLNV-RNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRS 690
+ L E D ++ IN+ + +N+ H + + +L+ +L +IV R + K ++ S
Sbjct: 71 QRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLR--LIVAREPVHTKSSTSGPSS 127
Score = 28.2 bits (63), Expect = 7.6
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFA---YVTNINKEKVKGAEKYLEEKAIILEIQGQKVA 81
+ + P G L FSV +V ++ V ++ L+E IL I +
Sbjct: 29 IDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLD 88
Query: 82 -GYTRRDTIAWL 92
+ + IA L
Sbjct: 89 QNISHQQAIALL 100
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics,
structural genomics consortium, SGC; 2.70A {Homo sapiens}
Length = 117
Score = 105 bits (263), Expect = 7e-27
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 1031 EQYHAIELSRG-TRGFGFSIRGGREFQ--NMALFVLQIAENGPAALDGHLKVGDEIVEIN 1087
EL + + G GFS+ G R + +FV +I E A DG LK D+I+ IN
Sbjct: 19 RHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAIN 78
Query: 1088 GIN-TKNMTHAEAIEIIRNGDSTVRLLIKRG 1117
G + +TH +AI I++ TV+L+I RG
Sbjct: 79 GQALDQTITHQQAISILQKAKDTVQLVIARG 109
Score = 81.7 bits (202), Expect = 1e-18
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 818 SDVMVITLLRQEN-GFGFRIVGGTEEGSQVS---IGHIVPGGAADLDGRLCTGDEIVSVD 873
V V LL+ + G GF +VG E + I G A DGRL D+I++++
Sbjct: 19 RHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAIN 78
Query: 874 NLSVL-NSSHHHVVELMGKASVYGRVTLGIRRKVMP 908
++ +H + ++ KA V L I R +P
Sbjct: 79 GQALDQTITHQQAISILQKAK--DTVQLVIARGSLP 112
Score = 76.6 bits (189), Expect = 8e-17
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 446 RGLGFTIVGGDDSKEEFLQI--KSVVPNGPAALEGHLQTGDVLVYVNDKCVL-GYTHHDM 502
GLGF++VG L I + + A +G L+ D ++ +N + + TH
Sbjct: 32 GGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQA 91
Query: 503 VSVFQSISPGETVQLEVCRGYPLP 526
+S+ Q +TVQL + RG LP
Sbjct: 92 ISILQKA--KDTVQLVIARG-SLP 112
Score = 72.8 bits (179), Expect = 2e-15
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 923 VTITRRENEGFGFVII----SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIM 978
+ + + G GF ++ + + G + I E S A R G L D ILA+N +
Sbjct: 24 FELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALD 83
Query: 979 -SLHHGEIVNLIKDSGYCVTLTIGAP 1003
++ H + +++++ + V L I
Sbjct: 84 QTITHQQAISILQKAKDTVQLVIARG 109
Score = 50.8 bits (122), Expect = 9e-08
Identities = 18/109 (16%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 585 PSSTDLILESDS---EYLTIPIVKG-AMGFGFTIA---DSSHGQK---VKKILDR---QR 631
D ++++ + ++K + G GF++ + G+ V++I + R
Sbjct: 5 CDEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHR 64
Query: 632 CKNLAEGDILIEINNLNV-RNMCHGEVVQVLKDCQRNLEANIIVQRSRL 679
L E D ++ IN + + + H + + +L+ + ++ +++ R L
Sbjct: 65 DGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQ--LVIARGSL 111
Score = 29.7 bits (67), Expect = 2.2
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFA---YVTNINKEKVKGAEKYLEEKAIILEIQGQKVA 81
L PP G L FSV G +V I + V + L+E IL I GQ +
Sbjct: 24 FELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALD 83
Query: 82 -GYTRRDTIAWL 92
T + I+ L
Sbjct: 84 QTITHQQAISIL 95
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 104 bits (261), Expect = 9e-27
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 1024 EEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEI 1083
++ + L G G SI GG+E + + + +I PA G L VGD I
Sbjct: 2 KKSQGVGPIRKVLLLKEDHEGLGISITGGKE-HGVPILISEIHPGQPADRCGGLHVGDAI 60
Query: 1084 VEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+ +NG+N ++ H EA+ I+ + +
Sbjct: 61 LAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVY 93
Score = 92.4 bits (230), Expect = 2e-22
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 813 KSVEYSDVMVITLLRQEN-GFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVS 871
KS + + LL++++ G G I GG E G + I I PG AD G L GD I++
Sbjct: 3 KSQGVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILA 62
Query: 872 VDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAE 911
V+ +++ ++ H V ++ + G + + +
Sbjct: 63 VNGVNLRDTKHKEAVTILSQQR--GEIEFEVVYVALEHHH 100
Score = 91.3 bits (227), Expect = 4e-22
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 918 GYPYDVTITRRENEGFGFVIISSL-NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVD 976
G V + + ++EG G I + I I PADR G LH+GD ILAVN V+
Sbjct: 8 GPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVN 67
Query: 977 IMSLHHGEIVNLIKDSGYCVTLTI 1000
+ H E V ++ + +
Sbjct: 68 LRDTKHKEAVTILSQQRGEIEFEV 91
Score = 71.6 bits (176), Expect = 3e-15
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
L + GLG +I GG + L I + P PA G L GD ++ VN + H
Sbjct: 16 LKEDHEGLGISITGGKEHGVPIL-ISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHK 74
Query: 501 DMVSVFQSISPGETVQLEV 519
+ V++ ++ EV
Sbjct: 75 EAVTILS--QQRGEIEFEV 91
Score = 56.6 bits (137), Expect = 5e-10
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 605 KGAMGFGFTIA---DSSHGQKVKKILDRQ---RCKNLAEGDILIEINNLNVRNMCHGEVV 658
+ G G +I + + +I Q RC L GD ++ +N +N+R+ H E V
Sbjct: 18 EDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAV 77
Query: 659 QVLKDCQRNLEANIIVQRSRLQHKK 683
+L + E V L+H
Sbjct: 78 TILSQQRG--EIEFEVVYVALEHHH 100
Score = 36.2 bits (84), Expect = 0.008
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 3/81 (3%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGYT 84
V L L S+ GG + G ++ I+ + L IL + G +
Sbjct: 13 VLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 72
Query: 85 RRDTIAWLNHCCRSGKTLTLR 105
++ + L+ + +
Sbjct: 73 HKEAVTILS---QQRGEIEFE 90
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 104 bits (260), Expect = 1e-26
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
P + ++++E + +GF + + G I I E SPA+++G L GD +L +N V +
Sbjct: 2 PRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDK 60
Query: 980 LHHGEIVNLIKDSGYCVTLTI 1000
H ++V L++ SG VTL +
Sbjct: 61 EEHAQVVELVRKSGNSVTLLV 81
Score = 83.6 bits (207), Expect = 2e-19
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 1036 IELSRG-TRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNM 1094
+LS+ + +GF +R ++ + I E PA G L GD ++ ING+
Sbjct: 5 SKLSKQEGQNYGFFLRIEKD--TDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKE 61
Query: 1095 THAEAIEIIRNGDSTVRLLIKRGGSV 1120
HA+ +E++R ++V LL+ G S
Sbjct: 62 EHAQVVELVRKSGNSVTLLVLDGDSY 87
Score = 65.2 bits (159), Expect = 6e-13
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 823 ITLLRQEN-GFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSS 881
L +QE +GF + + + I I G A+ G L GD ++ ++ + V
Sbjct: 5 SKLSKQEGQNYGFFLRIEKDTDGHL-IRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEE 62
Query: 882 HHHVVELMGKASVYGRVTLGIRRK 905
H VVEL+ K+ VTL +
Sbjct: 63 HAQVVELVRKSG--NSVTLLVLDG 84
Score = 57.1 bits (138), Expect = 4e-10
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 446 RGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
+ GF + D+ I+ + PA G L GD ++ +N V H +V +
Sbjct: 13 QNYGFFLRIEKDTDGHL--IRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVEL 69
Query: 506 FQSISPGETVQLEVCRG 522
+ G +V L V G
Sbjct: 70 VRKS--GNSVTLLVLDG 84
Score = 50.5 bits (121), Expect = 8e-08
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 609 GFGFTI--ADSSHGQKVKKILDR---QRCKNLAEGDILIEINNLNVRNMCHGEVVQVLKD 663
+GF + + G ++ I + ++ L +GD ++ IN + V H +VV++++
Sbjct: 14 NYGFFLRIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRK 72
Query: 664 C 664
Sbjct: 73 S 73
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 104 bits (260), Expect = 2e-26
Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 10/120 (8%)
Query: 1009 ASSTTSVSAASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQ----NMALFVLQ 1064
+S ++ H + + + + G G I GG+E + ++ +
Sbjct: 2 SSGSSGHYIFPHARIKI------TRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAK 55
Query: 1065 IAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAPT 1124
I G A G L G +++E NGI + T+ E II + ++ ++ P+
Sbjct: 56 ILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNMSGPS 115
Score = 85.6 bits (212), Expect = 6e-20
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQ-----VSIGHIVPGGAADLDGRLCTGDEIVSVDNLS 876
NG G RIVGG E I I+PGG+A+ G+L G +++ + +
Sbjct: 22 SKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIP 81
Query: 877 VLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETT 913
+ + ++ V ++ + S G + +R + ++
Sbjct: 82 LTSKTYEEVQSIISQQS--GEAEICVRLDLNMSGPSS 116
Score = 77.1 bits (190), Expect = 5e-17
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 6/100 (6%)
Query: 431 ELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQ----IKSVVPNGPAALEGHLQTGDVL 486
+ R S GLG IVGG + + I ++P G A G L G +
Sbjct: 15 RIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQV 74
Query: 487 VYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLP 526
+ N + T+ ++ S+ ++ V +
Sbjct: 75 LEWNGIPLTSKTYEEVQSIIS--QQSGEAEICVRLDLNMS 112
Score = 73.6 bits (181), Expect = 1e-15
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 922 DVTITRRENEGFGFVII------SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHV 975
D G G I+ + G+ I +I+ A+++G+L G +L N +
Sbjct: 21 DSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGI 80
Query: 976 DIMSLHHGEIVNLIKDSGYCVTLTI 1000
+ S + E+ ++I + +
Sbjct: 81 PLTSKTYEEVQSIISQQSGEAEICV 105
Score = 49.4 bits (118), Expect = 2e-07
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 13/85 (15%)
Query: 605 KGAMGFGFTIA---DSSHGQK-----VKKILDRQ---RCKNLAEGDILIEINNLNVRNMC 653
G G I + + KIL + L EG ++E N + + +
Sbjct: 27 VSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKT 86
Query: 654 HGEVVQVLKDCQRNLEANIIVQRSR 678
+ EV ++ EA I V+
Sbjct: 87 YEEVQSIISQQSG--EAEICVRLDL 109
Score = 29.7 bits (67), Expect = 2.1
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 8/85 (9%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGE-----FAYVTNINKEKVKGAEKYLEEKAIILEIQGQK 79
L + GG + AY+ I L E +LE G
Sbjct: 22 SKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIP 81
Query: 80 VAGYTRRDTIAWLNHCCRSGKTLTL 104
+ T + + ++ + +
Sbjct: 82 LTSKTYEEVQSIIS---QQSGEAEI 103
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 103 bits (258), Expect = 2e-26
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1040 RGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEA 1099
+G +GF + GG++F L + ++ AAL +L +GD I I+G NT NMTH EA
Sbjct: 10 QGPGPWGFRLVGGKDF-EQPLAISRVTPGSKAAL-ANLCIGDVITAIDGENTSNMTHLEA 67
Query: 1100 IEIIRNGDSTVRLLIKRG 1117
I+ + L + R
Sbjct: 68 QNRIKGCTDNLTLTVARS 85
Score = 71.6 bits (176), Expect = 2e-15
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 826 LRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHV 885
L+ +GFR+VGG + ++I + PG A L LC GD I ++D + N +H
Sbjct: 9 LQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAL-ANLCIGDVITAIDGENTSNMTHLEA 67
Query: 886 VELMGKASVYGRVTLGIRR 904
+ + +TL + R
Sbjct: 68 QNRIKGCT--DNLTLTVAR 84
Score = 71.2 bits (175), Expect = 3e-15
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 923 VTITRRENEGFGFVIISSL-NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
I + +GF ++ + I R+ S A + L +GD I A++ + ++
Sbjct: 5 QQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMT 63
Query: 982 HGEIVNLIKDSGYCVTLTI 1000
H E N IK +TLT+
Sbjct: 64 HLEAQNRIKGCTDNLTLTV 82
Score = 61.2 bits (149), Expect = 1e-11
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 446 RGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
GF +VGG D ++ L I V P AAL L GDV+ ++ + TH + +
Sbjct: 13 GPWGFRLVGGKDFEQP-LAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNR 70
Query: 506 FQSISPGETVQLEVCRGYP 524
+ + + L V R
Sbjct: 71 IK--GCTDNLTLTVARSEH 87
Score = 55.1 bits (133), Expect = 1e-09
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 604 VKGAMGFGFTI---ADSSHGQKVKKILDRQ--RCKNLAEGDILIEINNLNVRNMCHGEVV 658
++G +GF + D + ++ NL GD++ I+ N NM H E
Sbjct: 9 LQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQ 68
Query: 659 QVLKDCQRNLEANIIVQRS 677
+K C NL + V RS
Sbjct: 69 NRIKGCTDNLT--LTVARS 85
Score = 33.9 bits (78), Expect = 0.038
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGYT 84
+ + G F + GG D + ++ + K A L +I I G+ + T
Sbjct: 5 QQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGS-KAALANLCIGDVITAIDGENTSNMT 63
Query: 85 RRDTIAWLNHCCRSGKTLTL 104
+ + LTL
Sbjct: 64 HLEAQNRI---KGCTDNLTL 80
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1
interacting protein 1, PDZ domain, structural genomics;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 103 bits (259), Expect = 2e-26
Identities = 52/103 (50%), Positives = 64/103 (62%), Gaps = 8/103 (7%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGST--------IGRIIEDSPADRSGELHLGDHILA 971
DV I R+ENEGFGFVIISSLN+ S IGRII+ SPADR +L +GD ILA
Sbjct: 11 TSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILA 70
Query: 972 VNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTS 1014
VN I+++ H +IV LIKD+G VTL I + S +S
Sbjct: 71 VNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEELNSPSGPSS 113
Score = 103 bits (258), Expect = 3e-26
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 1026 GGEHDEQYHAIELSRGT-RGFGFSIRGGR------EFQNMALFVLQIAENGPAALDGHLK 1078
G Q + + R GFGF I + + +I + PA LK
Sbjct: 4 GSSGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLK 63
Query: 1079 VGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAPTDNAAG 1129
VGD I+ +NG + NM HA+ +++I++ +V L I + +P+ ++G
Sbjct: 64 VGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEELNSPSGPSSG 114
Score = 80.6 bits (199), Expect = 3e-18
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 823 ITLLRQEN-GFGFRIVGGT-------EEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDN 874
+ + R+EN GFGF I+ IG I+ G AD +L GD I++V+
Sbjct: 14 VVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNG 73
Query: 875 LSVLNSSHHHVVELMGKASVYGRVTLGIRRK 905
S++N H +V+L+ A VTL I +
Sbjct: 74 QSIINMPHADIVKLIKDAG--LSVTLRIIPQ 102
Score = 73.2 bits (180), Expect = 1e-15
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 443 KSLRGLGFTIVGGDDSKEEFLQ------IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
K G GF I+ + E I ++ PA L+ GD ++ VN + ++
Sbjct: 19 KENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIIN 78
Query: 497 YTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDPNT 534
H D+V + + G +V L + L P+ P++
Sbjct: 79 MPHADIVKLIK--DAGLSVTLRIIPQEELN-SPSGPSS 113
Score = 57.8 bits (140), Expect = 2e-10
Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 16/109 (14%)
Query: 593 ESDSEYLTIPIVK-GAMGFGFTIA----------DSSHGQKVKKILDRQ---RCKNLAEG 638
+ + I + GFGF I + K+ +I+D RC L G
Sbjct: 6 SGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVG 65
Query: 639 DILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPP 687
D ++ +N ++ NM H ++V+++KD ++ + + + + P
Sbjct: 66 DRILAVNGQSIINMPHADIVKLIKDAGLSVT--LRIIPQEELNSPSGPS 112
Score = 29.3 bits (66), Expect = 2.9
Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 10/102 (9%)
Query: 13 AGGTHWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFA-------YVTNINKEKVKGAEKY 65
+ G+ + + V + + F + + E + I
Sbjct: 2 SSGSSGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK 61
Query: 66 LEEKAIILEIQGQKVAGYTRRDTIAWLNHCCRSGKTLTLRTV 107
L+ IL + GQ + D + + +G ++TLR +
Sbjct: 62 LKVGDRILAVNGQSIINMPHADIVKLIK---DAGLSVTLRII 100
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 103 bits (259), Expect = 2e-26
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 1028 EHDEQYHAIELSRGT-RGFGFSIRGGREFQ-----NMALFVLQIAENGPAALDGHLKVGD 1081
E + + + L + + RGFG ++ GGR+ ++ + + GPA DG L+ D
Sbjct: 10 EVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQEND 67
Query: 1082 EIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+V +NG +++ H+ A++ +R +++KR
Sbjct: 68 RVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKR 102
Score = 77.1 bits (190), Expect = 6e-17
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 11/103 (10%)
Query: 819 DVMVITLLRQEN-GFGFRIVGGTEEGSQVS------IGHIVPGGAADLDGRLCTGDEIVS 871
+ +TL + GFG + GG + + I ++PGG AD G L D +V
Sbjct: 14 EQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVM 71
Query: 872 VDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTS 914
V+ + + H V+ + K+ + ++R S
Sbjct: 72 VNGTPMEDVLHSFAVQQLRKSG--KIAAIVVKRPRKVQVAPLS 112
Score = 76.3 bits (188), Expect = 1e-16
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 10/113 (8%)
Query: 428 NPDELIGERIHSSLVK-SLRGLGFTIVGGDDSKEEFLQ-----IKSVVPNGPAALEGHLQ 481
+E+I E+ +L K S RG G + GG D+ I V+P GPA +G LQ
Sbjct: 7 GMEEVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQ 64
Query: 482 TGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDPNT 534
D +V VN + H V + G+ + V R + P +
Sbjct: 65 ENDRVVMVNGTPMEDVLHSFAVQQLR--KSGKIAAIVVKRPRKVQVAPLSGPS 115
Score = 75.6 bits (186), Expect = 2e-16
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 920 PYDVTITRRENEGFGFVII----SSLNKAGST---IGRIIEDSPADRSGELHLGDHILAV 972
Y VT+ + GFG + + + G T I ++ PAD G L D ++ V
Sbjct: 15 QYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMV 72
Query: 973 NHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSA 1017
N + + H V ++ SG + + P A + S
Sbjct: 73 NGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQVAPLSGPSSG 117
Score = 59.4 bits (144), Expect = 1e-10
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 22/111 (19%)
Query: 593 ESDSEYLTIPIVKG-AMGFGFTIA---DSSHGQK------VKKIL-----DRQRCKNLAE 637
E E T+ + K GFG ++ D+ H + + +L D L E
Sbjct: 10 EVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADGL----LQE 65
Query: 638 GDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR-LQHKKTSPP 687
D ++ +N + ++ H VQ L+ + A I+V+R R +Q S P
Sbjct: 66 NDRVVMVNGTPMEDVLHSFAVQQLRKSGK--IAAIVVKRPRKVQVAPLSGP 114
Score = 32.8 bits (75), Expect = 0.17
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 11/86 (12%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFA------YVTNINKEKVKGAEKYLEEKAIILEIQGQ 78
VTL +V GG D+ F ++++ A+ L+E ++ + G
Sbjct: 18 VTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGP--ADGLLQENDRVVMVNGT 75
Query: 79 KVAGYTRRDTIAWLNHCCRSGKTLTL 104
+ + L GK +
Sbjct: 76 PMEDVLHSFAVQQLRKS---GKIAAI 98
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural
protein-hydrolase complex, peptide binding protei; NMR
{Homo sapiens}
Length = 112
Score = 103 bits (258), Expect = 3e-26
Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 6/113 (5%)
Query: 1003 PISGDDASSTTSVSAASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFV 1062
SS Y +G + L G G SI GG+E + + +
Sbjct: 4 HHHHHHHSSGHIEGRHMENLYFQG-----IRKVLLLKEDHEGLGISITGGKEH-GVPILI 57
Query: 1063 LQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIK 1115
+I PA G L VGD I+ +NG+N ++ H EA+ I+ + +
Sbjct: 58 SEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 110
Score = 92.5 bits (230), Expect = 2e-22
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Query: 907 MPPAETTSMMLGYPYDVTITRRENEGFGFVIISSL-NKAGSTIGRIIEDSPADRSGELHL 965
+ ++ V + + ++EG G I + I I PADR G LH+
Sbjct: 15 IEGRHMENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHV 74
Query: 966 GDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
GD ILAVN V++ H E V ++ + +
Sbjct: 75 GDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEV 109
Score = 89.8 bits (223), Expect = 2e-21
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 805 PRVRPTNIKSVEYSDVMVITLLRQEN-GFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRL 863
+ +++++ + + + LL++++ G G I GG E G + I I PG AD G L
Sbjct: 13 GHIEGRHMENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGL 72
Query: 864 CTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIR 903
GD I++V+ +++ ++ H V ++ + G + +
Sbjct: 73 HVGDAILAVNGVNLRDTKHKEAVTILSQQR--GEIEFEVV 110
Score = 71.3 bits (175), Expect = 5e-15
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 429 PDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVY 488
G R L + GLG +I GG + L I + P PA G L GD ++
Sbjct: 22 NLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPIL-ISEIHPGQPADRCGGLHVGDAILA 80
Query: 489 VNDKCVLGYTHHDMVSVFQSISPGETVQLEV 519
VN + H + V++ ++ EV
Sbjct: 81 VNGVNLRDTKHKEAVTILS--QQRGEIEFEV 109
Score = 54.4 bits (131), Expect = 5e-09
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 592 LESDSEYLTIPIVKGAMGFGFTIA---DSSHGQKVKKILDRQ---RCKNLAEGDILIEIN 645
L + + + G G +I + + +I Q RC L GD ++ +N
Sbjct: 23 LYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVN 82
Query: 646 NLNVRNMCHGEVVQVLKDCQ 665
+N+R+ H E V +L +
Sbjct: 83 GVNLRDTKHKEAVTILSQQR 102
Score = 37.0 bits (86), Expect = 0.006
Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 4/104 (3%)
Query: 2 HKRPNKLDNLTAGGTHWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKG 61
H ++ ++Q V L L S+ GG + G ++ I+ +
Sbjct: 9 HHSSGHIEGRHMENLYFQGIRK-VLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPAD 67
Query: 62 AEKYLEEKAIILEIQGQKVAGYTRRDTIAWLNHCCRSGKTLTLR 105
L IL + G + ++ + L+ + +
Sbjct: 68 RCGGLHVGDAILAVNGVNLRDTKHKEAVTILS---QQRGEIEFE 108
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 101 bits (255), Expect = 6e-26
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 1032 QYHAIELSRGTRG--FGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGI 1089
+ + L + G G + + +F+L + E G AA DG L D ++ ING
Sbjct: 3 EILQVALHKRDSGEQLGIKLVRRTD--EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGH 60
Query: 1090 NTKNMTHAEAIEIIRNGDSTVRLLIKRGGS 1119
+ K T A +II+ V L I R G
Sbjct: 61 DLKYGTPELAAQIIQASGERVNLTIARPGK 90
Score = 88.5 bits (220), Expect = 3e-21
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 819 DVMVITLLRQENG--FGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLS 876
+++ + L ++++G G ++V T+E V I ++ GG A DGRL + D +++++
Sbjct: 3 EILQVALHKRDSGEQLGIKLVRRTDEPG-VFILDLLEGGLAAQDGRLSSNDRVLAINGHD 61
Query: 877 VLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAE 911
+ + +++ + RV L I R P E
Sbjct: 62 LKYGTPELAAQIIQASG--ERVNLTIARPGKPEIE 94
Score = 78.9 bits (195), Expect = 6e-18
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 921 YDVTITRREN-EGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
V + +R++ E G ++ ++ G I ++E A + G L D +LA+N D+
Sbjct: 5 LQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKY 64
Query: 980 LHHGEIVNLIKDSGYCVTLTIGAP 1003
+I+ SG V LTI P
Sbjct: 65 GTPELAAQIIQASGERVNLTIARP 88
Score = 74.6 bits (184), Expect = 2e-16
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 446 RGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
LG +V D F I ++ G AA +G L + D ++ +N + T +
Sbjct: 16 EQLGIKLVRRTDEPGVF--ILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQI 73
Query: 506 FQSISPGETVQLEVCRGYP 524
Q + GE V L + R
Sbjct: 74 IQ--ASGERVNLTIARPGK 90
Score = 51.9 bits (125), Expect = 2e-08
Identities = 12/87 (13%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Query: 597 EYLTIPIVKGA--MGFGFTIA--DSSHGQKVKKILDR---QRCKNLAEGDILIEINNLNV 649
E L + + K G + G + +L+ + L+ D ++ IN ++
Sbjct: 3 EILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDL 62
Query: 650 RNMCHGEVVQVLKDCQRNLEANIIVQR 676
+ Q+++ + + + R
Sbjct: 63 KYGTPELAAQIIQASGERVN--LTIAR 87
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 102 bits (256), Expect = 6e-26
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
P + ++++E + +GF + + G I I E SPA+++G L GD +L +N V +
Sbjct: 14 PRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDK 72
Query: 980 LHHGEIVNLIKDSGYCVTLTI 1000
H ++V L++ SG VTL +
Sbjct: 73 EEHAQVVELVRKSGNSVTLLV 93
Score = 84.4 bits (209), Expect = 1e-19
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 1009 ASSTTSVSAASHREYEEGGEHDEQYHAIELSRG-TRGFGFSIRGGREFQNMALFVLQIAE 1067
SS +S A++ E +LS+ + +GF +R ++ + I E
Sbjct: 1 GSSGSSGMASTFNPRE-----------CKLSKQEGQNYGFFLRIEKD--TDGHLIRVIEE 47
Query: 1068 NGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGS 1119
PA G L GD ++ ING+ HA+ +E++R ++V LL+ G S
Sbjct: 48 GSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDS 98
Score = 65.2 bits (159), Expect = 7e-13
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 822 VITLLRQEN-GFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNS 880
L +QE +GF + + + I I G A+ G L GD ++ ++ + V
Sbjct: 16 ECKLSKQEGQNYGFFLRIEKDTDGHL-IRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKE 73
Query: 881 SHHHVVELMGKASVYGRVTLGIRRK 905
H VVEL+ K+ VTL +
Sbjct: 74 EHAQVVELVRKSG--NSVTLLVLDG 96
Score = 57.1 bits (138), Expect = 5e-10
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 446 RGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
+ GF + D+ I+ + PA G L GD ++ +N V H +V +
Sbjct: 25 QNYGFFLRIEKDTDGHL--IRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVEL 81
Query: 506 FQSISPGETVQLEVCRG 522
+ G +V L V G
Sbjct: 82 VRKS--GNSVTLLVLDG 96
Score = 50.5 bits (121), Expect = 1e-07
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 609 GFGFTI--ADSSHGQKVKKILDR---QRCKNLAEGDILIEINNLNVRNMCHGEVVQVLKD 663
+GF + + G ++ I + ++ L +GD ++ IN + V H +VV++++
Sbjct: 26 NYGFFLRIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRK 84
Query: 664 C 664
Sbjct: 85 S 85
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 102 bits (256), Expect = 7e-26
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 1025 EGGEHDEQYHAIELSRGTR-GFGFSIRGGREFQ--------NMALFVLQIAENGPAALDG 1075
H +E+ R G SI GG+ +F+ Q+ E+ PA
Sbjct: 8 PNFSHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTN 67
Query: 1076 HLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
LK GD+I+E++G++ +N +H+EA+E I+N + V +++
Sbjct: 68 ALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQS 108
Score = 87.5 bits (217), Expect = 1e-20
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 918 GYPYDVTITRRENEGFGFVII----------SSLNKAGSTIGRIIEDSPADRSGELHLGD 967
G P V I R N G I+ + G I +++EDSPA ++ L GD
Sbjct: 14 GPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGD 73
Query: 968 HILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
IL V+ VD+ + H E V IK++G V +
Sbjct: 74 KILEVSGVDLQNASHSEAVEAIKNAGNPVVFIV 106
Score = 82.1 bits (203), Expect = 1e-18
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 12/104 (11%)
Query: 816 EYSDVMVITLLRQEN-GFGFRIVGGTEEGSQVS---------IGHIVPGGAADLDGRLCT 865
+ ++ + R+ N G IVGG ++ I ++ A L T
Sbjct: 12 HWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKT 71
Query: 866 GDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPP 909
GD+I+ V + + N+SH VE + A V ++ P
Sbjct: 72 GDKILEVSGVDLQNASHSEAVEAIKNAG--NPVVFIVQSLSSTP 113
Score = 74.0 bits (182), Expect = 7e-16
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 447 GLGFTIVGGDDSKEEFLQ--------IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYT 498
LG +IVGG + IK V+ + PA L+TGD ++ V+ + +
Sbjct: 28 SLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNAS 87
Query: 499 HHDMVSVFQSISPGETVQLEVCRGYPLP 526
H + V + + G V V P
Sbjct: 88 HSEAVEAIK--NAGNPVVFIVQSLSSTP 113
Score = 53.6 bits (129), Expect = 9e-09
Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 18/110 (16%)
Query: 585 PSSTDLILESDSEYLTIPIVKGA-MGFGFTIA------------DSSHGQKVKKILDRQ- 630
S+ + I + + G +I + G +K++L+
Sbjct: 3 SGSSGPNFSHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSP 62
Query: 631 --RCKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
+ L GD ++E++ ++++N H E V+ +K+ IVQ
Sbjct: 63 AGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGN--PVVFIVQSLS 110
Score = 32.1 bits (73), Expect = 0.26
Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 13/99 (13%)
Query: 15 GTHWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFA---------YVTNINKEKVKGAEKY 65
+HW V + P+ SL S+ GG + ++ + ++ G
Sbjct: 10 FSHWGPPRI-VEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNA 68
Query: 66 LEEKAIILEIQGQKVAGYTRRDTIAWLNHCCRSGKTLTL 104
L+ ILE+ G + + + + + +G +
Sbjct: 69 LKTGDKILEVSGVDLQNASHSEAVEAIK---NAGNPVVF 104
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 102 bits (256), Expect = 9e-26
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 1014 SVSAASHREYEEGGEHDEQYHAIELSRG-TRGFGFSIRGGREFQNMALFVLQIAENGPAA 1072
S ++ R + L G R G +IRGG E+ + +++ + A
Sbjct: 2 SSGSSGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEY-GLGIYITGVDPGSEAE 60
Query: 1073 LDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAPTDNAAGIYS 1132
G LKVGD+I+E+NG + N+ H EA+ ++++ + L +K G +
Sbjct: 61 GSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSSRH-LILTVKDVGRLPHARTTVDETKW 118
Query: 1133 SDTSSN 1138
+SS
Sbjct: 119 IASSSG 124
Score = 79.1 bits (195), Expect = 2e-17
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Query: 801 NLGLPRVRPTNIKSVEYSDVMVITLLRQEN-GFGFRIVGGTEEGSQVSIGHIVPGGAADL 859
+ G R + + ++ D + L+ + G I GG E G + I + PG A+
Sbjct: 2 SSGSSGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEG 61
Query: 860 DGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSM 915
G L GD+I+ V+ S LN H V L+ + + L ++ P T++
Sbjct: 62 SG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS---RHLILTVKDVGRLPHARTTV 113
Score = 68.3 bits (167), Expect = 8e-14
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 918 GYPYDVTITRRENEGFGFVIIS-SLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVD 976
G V + + G I + G I + S A+ SG L +GD IL VN
Sbjct: 19 GDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRS 77
Query: 977 IMSLHHGEIVNLIKDSGYCVTLTI----GAPISGDDASSTTSVSAAS 1019
+++ H E V L+K S + + LT+ P + T ++++S
Sbjct: 78 FLNILHDEAVRLLKSSRH-LILTVKDVGRLPHARTTVDETKWIASSS 123
Score = 59.4 bits (144), Expect = 9e-11
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 446 RGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
R LG TI GG + + I V P A G L+ GD ++ VN + L H + V +
Sbjct: 32 RSLGLTIRGGAEYGLG-IYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRL 89
Query: 506 FQSISPGETVQLEVCRGYPLPFDPNDP 532
+S + L V LP
Sbjct: 90 LKS---SRHLILTVKDVGRLPHARTTV 113
Score = 49.8 bits (119), Expect = 2e-07
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 9/118 (7%)
Query: 583 ERPSSTDLILESDSEYLTIPIVKG-AMGFGFTI---ADSSHGQKVKKILDRQRC--KNLA 636
+ L L + + +V G G TI A+ G + + L
Sbjct: 6 SGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLK 65
Query: 637 EGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKTPT 694
GD ++E+N + N+ H E V++LK + + V+ + +K
Sbjct: 66 VGDQILEVNGRSFLNILHDEAVRLLKSSR---HLILTVKDVGRLPHARTTVDETKWIA 120
Score = 36.3 bits (84), Expect = 0.013
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 21 KETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKY-LEEKAIILEIQGQK 79
E V L + SL ++ GG++ G Y+T ++ AE L+ ILE+ G+
Sbjct: 20 DEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSE--AEGSGLKVGDQILEVNGRS 77
Query: 80 VAGYTRRDTIAWLNHCCRSGKTLTL 104
+ + L +S + L L
Sbjct: 78 FLNILHDEAVRLL----KSSRHLIL 98
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 100 bits (252), Expect = 1e-25
Identities = 39/82 (47%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Query: 597 EYLTIPIVKGAMGFGFTIADS--SHGQKVKKILDRQRCKNLAEGDILIEINNLNVRNMCH 654
E +T+ IVKG MGFGFTIADS GQ+VK+I+D R + L EGD+++E+N NV+ + H
Sbjct: 3 ELITVHIVKGPMGFGFTIADSPGGGGQRVKQIVDSPRSRGLKEGDLIVEVNKKNVQALTH 62
Query: 655 GEVVQVLKDCQRNLEANIIVQR 676
+VV +L + + E ++VQR
Sbjct: 63 NQVVDMLVESPKGSEVTLLVQR 84
Score = 92.0 bits (229), Expect = 1e-22
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
+ + + +G GFGF+I V QI + LK GD IVE+N N
Sbjct: 3 ELITVHIVKGPMGFGFTIADSPG--GGGQRVKQI---VDSPRSRGLKEGDLIVEVNKKNV 57
Query: 1092 KNMTHAEAIEIIRNGD--STVRLLIKRGGSV 1120
+ +TH + ++++ S V LL++R +
Sbjct: 58 QALTHNQVVDMLVESPKGSEVTLLVQRQTRL 88
Score = 80.0 bits (198), Expect = 2e-18
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 435 ERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCV 494
E I +VK G GFTI + +K +V + L+ GD++V VN K V
Sbjct: 3 ELITVHIVKGPMGFGFTIADSPGGGGQR--VKQIVD---SPRSRGLKEGDLIVEVNKKNV 57
Query: 495 LGYTHHDMVSVFQSISPGETVQLEVCRGYPL 525
TH+ +V + G V L V R L
Sbjct: 58 QALTHNQVVDMLVESPKGSEVTLLVQRQTRL 88
Score = 75.8 bits (187), Expect = 7e-17
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 819 DVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVL 878
+++ + +++ GFGF I G Q + IV L GD IV V+ +V
Sbjct: 3 ELITVHIVKGPMGFGFTIADSPGGGGQR-VKQIVDSPR---SRGLKEGDLIVEVNKKNVQ 58
Query: 879 NSSHHHVVELMGKASVYGRVTLGIRRK 905
+H+ VV+++ ++ VTL ++R+
Sbjct: 59 ALTHNQVVDMLVESPKGSEVTLLVQRQ 85
Score = 65.4 bits (160), Expect = 3e-13
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
V I + GFGF I S G + +I+ + RS L GD I+ VN ++ +
Sbjct: 4 LITVHIVKGPM-GFGFTIADSPGGGGQRVKQIV---DSPRSRGLKEGDLIVEVNKKNVQA 59
Query: 980 LHHGEIVNLIKDS--GYCVTLTI 1000
L H ++V+++ +S G VTL +
Sbjct: 60 LTHNQVVDMLVESPKGSEVTLLV 82
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens}
SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 100 bits (252), Expect = 1e-25
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
L +G G+GF + G + + ++ + PA G L GD +VE+NG N + T
Sbjct: 7 CCLEKGPNGYGFHLHGEKG--KLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKET 63
Query: 1096 HAEAIEIIRNGDSTVRLLIKR 1116
H + + IR + VRLL+
Sbjct: 64 HQQVVSRIRAALNAVRLLVVD 84
Score = 82.7 bits (205), Expect = 3e-19
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
P + + N G+GF + K G I + SPA+++G L GD ++ VN ++
Sbjct: 4 PRLCCLEKGPN-GYGFHLHGEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEK 61
Query: 980 LHHGEIVNLIKDSGYCVTLTI 1000
H ++V+ I+ + V L +
Sbjct: 62 ETHQQVVSRIRAALNAVRLLV 82
Score = 74.6 bits (184), Expect = 2e-16
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSS 881
+ L + NG+GF + G + Q I + PG A+ G L GD +V V+ +V +
Sbjct: 6 LCCLEKGPNGYGFHLHGEKGKLGQY-IRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKET 63
Query: 882 HHHVVELMGKASVYGRVTLGIRRK 905
H VV + A V L +
Sbjct: 64 HQQVVSRIRAAL--NAVRLLVVDP 85
Score = 65.8 bits (161), Expect = 2e-13
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
L K G GF + G ++ I+ V P PA G L GD LV VN + V TH
Sbjct: 9 LEKGPNGYGFHLHGEKGKLGQY--IRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQ 65
Query: 501 DMVSVFQSISPGETVQLEVCR 521
+VS ++ V+L V
Sbjct: 66 QVVSRIRAA--LNAVRLLVVD 84
Score = 55.4 bits (134), Expect = 1e-09
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 600 TIPIVKGAMGFGFTIA--DSSHGQKVKKILDR---QRCKNLAEGDILIEINNLNVRNMCH 654
+ KG G+GF + GQ ++ + ++ L GD L+E+N NV H
Sbjct: 6 LCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETH 64
Query: 655 GEVVQVLKDCQRNLEANIIVQR 676
+VV ++ + ++V
Sbjct: 65 QQVVSRIRAALNAVR--LLVVD 84
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 102 bits (255), Expect = 1e-25
Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 5/125 (4%)
Query: 1018 ASHREYEEGGEHDEQYHAIELSR-GTRGFGFSIRGGREFQN----MALFVLQIAENGPAA 1072
S + + +EL R + G I G + ++V + A
Sbjct: 1 GSSGSSGGSDSSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAY 60
Query: 1073 LDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAPTDNAAGIYS 1132
+GH++V D+IV ++G+N + + + +E++RN V L + R + + +
Sbjct: 61 HNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTSSSTSPLEPPSDR 120
Query: 1133 SDTSS 1137
S
Sbjct: 121 GTVSG 125
Score = 94.8 bits (236), Expect = 5e-23
Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 920 PYDVTITRRENEGFGFVIISSLN------KAGSTIGRIIEDSPADRSGELHLGDHILAVN 973
Y+V + R++ + G I+ + +G + +I S A +G + + D I+AV+
Sbjct: 16 TYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVD 75
Query: 974 HVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSAASH 1020
V+I + ++V +++++G V LT+ + S S
Sbjct: 76 GVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTSSSTSPLEPPSDRGT 122
Score = 85.9 bits (213), Expect = 6e-20
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 819 DVMVITLLRQEN-GFGFRIVGGTEEGSQVS-----IGHIVPGGAADLDGRLCTGDEIVSV 872
+ + L+R++ G RIVG + ++PG AA +G + D+IV+V
Sbjct: 15 ETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAV 74
Query: 873 DNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAET 912
D +++ ++H VVE++ A V L + R+ + +
Sbjct: 75 DGVNIQGFANHDVVEVLRNAG--QVVHLTLVRRKTSSSTS 112
Score = 77.5 bits (191), Expect = 6e-17
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 8/107 (7%)
Query: 443 KSLRGLGFTIVGGDDSKEEFLQ----IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYT 498
K + LG IVG + +KSV+P A GH+Q D +V V+ + G+
Sbjct: 24 KDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFA 83
Query: 499 HHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDPNTEVVTTVAVNAP 545
+HD+V V + + G+ V L + R P V+ P
Sbjct: 84 NHDVVEVLR--NAGQVVHLTLVRRKTSS--STSPLEPPSDRGTVSGP 126
Score = 57.1 bits (138), Expect = 8e-10
Identities = 18/114 (15%), Positives = 45/114 (39%), Gaps = 14/114 (12%)
Query: 593 ESDSEYLTIPIVK-GAMGFGFTIA---DSSHGQK-----VKKILDR---QRCKNLAEGDI 640
S E + +V+ G I +SH + VK ++ ++ D
Sbjct: 11 SSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDK 70
Query: 641 LIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKTPT 694
++ ++ +N++ + +VV+VL++ + ++ + R + + S T
Sbjct: 71 IVAVDGVNIQGFANHDVVEVLRNAGQ--VVHLTLVRRKTSSSTSPLEPPSDRGT 122
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 100 bits (251), Expect = 2e-25
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 1031 EQYHAIELSRG-TRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGI 1089
I L + +G G SI G R + +FV I + G A DG L GD+I+ +NG
Sbjct: 3 SDTLTIGLQKKPGKGLGLSIVGKRN--DTGVFVSDIVKGGIADADGRLMQGDQILMVNGE 60
Query: 1090 NTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+ +N T +++ TV L + R
Sbjct: 61 DVRNATQEAVAALLKCSLGTVTLEVGR 87
Score = 88.5 bits (220), Expect = 2e-21
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 818 SDVMVITLLRQE-NGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLS 876
SD + I L ++ G G IVG + V + IV GG AD DGRL GD+I+ V+
Sbjct: 3 SDTLTIGLQKKPGKGLGLSIVGK-RNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGED 61
Query: 877 VLNSSHHHVVELMGKASVYGRVTLGIRR 904
V N++ V L+ + G VTL + R
Sbjct: 62 VRNATQEAVAALLKCSL--GTVTLEVGR 87
Score = 80.8 bits (200), Expect = 2e-18
Identities = 24/81 (29%), Positives = 38/81 (46%)
Query: 921 YDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSL 980
+ + ++ +G G I+ N G + I++ AD G L GD IL VN D+ +
Sbjct: 6 LTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNA 65
Query: 981 HHGEIVNLIKDSGYCVTLTIG 1001
+ L+K S VTL +G
Sbjct: 66 TQEAVAALLKCSLGTVTLEVG 86
Score = 76.9 bits (190), Expect = 3e-17
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 433 IGERIHSSLVKS-LRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVND 491
+ + + L K +GLG +IVG + F + +V G A +G L GD ++ VN
Sbjct: 2 MSDTLTIGLQKKPGKGLGLSIVGKRNDTGVF--VSDIVKGGIADADGRLMQGDQILMVNG 59
Query: 492 KCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
+ V T + ++ + TV LEV R
Sbjct: 60 EDVRNATQEAVAALLK--CSLGTVTLEVGR 87
Score = 60.3 bits (147), Expect = 2e-11
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 594 SDSEYLTIPIVKGAM-GFGFTIA--DSSHGQKVKKILDRQ---RCKNLAEGDILIEINNL 647
S S+ LTI + K G G +I + G V I+ L +GD ++ +N
Sbjct: 1 SMSDTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGE 60
Query: 648 NVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQ 680
+VRN V +LK + V R
Sbjct: 61 DVRNATQEAVAALLKCSLG--TVTLEVGRISTY 91
Score = 29.1 bits (66), Expect = 2.1
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGYT 84
+ L P L S+ G + +V++I K + A+ L + IL + G+ V T
Sbjct: 8 IGLQKKPGKGLGLSIVGKRNDTGV-FVSDIVKGGIADADGRLMQGDQILMVNGEDVRNAT 66
Query: 85 RRDTIAWLNHCCRSGKTLTL 104
+ A L S T+TL
Sbjct: 67 QEAVAALLK---CSLGTVTL 83
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3
chimera; PDZ domain, PDZ binding, GIRK3 regulation, early
endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A 3qgl_A
Length = 107
Score = 100 bits (250), Expect = 3e-25
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 1027 GEHDEQYHAIELSRGTRGFGFSIRGGR-----------EFQNMALFVLQIAENGPAALDG 1075
G H + + + G+GF++RG E V + G A G
Sbjct: 1 GSHGGSPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG 60
Query: 1076 HLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
++ GD I+E+NG+N + TH + +++IR G+ + L +
Sbjct: 61 -VRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLS 100
Score = 77.0 bits (190), Expect = 4e-17
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 15/96 (15%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVS------------IGHIVPGGAADLDGRLCTGDEI 869
V+ +++ E+G+GF + G EG Q+ + ++PGGAAD G + GD I
Sbjct: 9 VVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRI 67
Query: 870 VSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRK 905
+ V+ ++V ++H VV+L+ + L +
Sbjct: 68 LEVNGVNVEGATHKQVVDLIRAGE--KELILTVLSV 101
Score = 76.6 bits (189), Expect = 5e-17
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 15/96 (15%)
Query: 918 GYPYDVTITRRENEGFGFVII-------------SSLNKAGSTIGRIIEDSPADRSGELH 964
G P V I + G+GF + L + ++ ADR+G +
Sbjct: 5 GSPRVVRI-VKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VR 62
Query: 965 LGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
GD IL VN V++ H ++V+LI+ + LT+
Sbjct: 63 KGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
Score = 65.1 bits (159), Expect = 6e-13
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQ-----------IKSVVPNGPAALEGHLQTGDVLVYV 489
+VKS G GF + G + + +V+P G A G ++ GD ++ V
Sbjct: 12 IVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRILEV 70
Query: 490 NDKCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
N V G TH +V + + + + + L V
Sbjct: 71 NGVNVEGATHKQVVDLIR--AGEKELILTVLS 100
Score = 50.1 bits (120), Expect = 1e-07
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 21/95 (22%)
Query: 600 TIPIVKGAMGFGFTIA---------------DSSHGQKVKKILDR---QRCKNLAEGDIL 641
+ IVK G+GF + + Q V +L R + +GD +
Sbjct: 9 VVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRA-GVRKGDRI 67
Query: 642 IEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQR 676
+E+N +NV H +VV +++ ++ L + V
Sbjct: 68 LEVNGVNVEGATHKQVVDLIRAGEKELI--LTVLS 100
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 98.6 bits (246), Expect = 8e-25
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMAL-FVLQIAENGPAALDGHLKVGDEIVEINGINTKNM 1094
+ L +G +GFGF +R + F+ ++ PA G ++ GD +V + G + + +
Sbjct: 7 LHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGL 65
Query: 1095 THAEAIEIIRNGDSTVRLLIKR 1116
H E + I+ S V L +
Sbjct: 66 GHEETVSRIQGQGSCVSLTVVD 87
Score = 81.2 bits (201), Expect = 1e-18
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 920 PYDVTITRRENEGFGFVI---ISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVD 976
P + + + +GFGF++ + G + + PA ++G + GD ++AV
Sbjct: 4 PRCLHL-EKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGES 61
Query: 977 IMSLHHGEIVNLIKDSGYCVTLTIGAP 1003
+ L H E V+ I+ G CV+LT+ P
Sbjct: 62 VEGLGHEETVSRIQGQGSCVSLTVVDP 88
Score = 71.6 bits (176), Expect = 2e-15
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQ--VSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLN 879
+ L + GFGF + + + + PG A G + GD +V+V SV
Sbjct: 6 CLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEG 64
Query: 880 SSHHHVVELMGKASVYGRVTLGIRRK 905
H V + V+L +
Sbjct: 65 LGHEETVSRIQGQG--SCVSLTVVDP 88
Score = 63.5 bits (155), Expect = 2e-12
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQ-IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTH 499
L K +G GF + Q + V P PA G +Q GD LV V + V G H
Sbjct: 9 LEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGH 67
Query: 500 HDMVSVFQSISPGETVQLEVCR 521
+ VS Q G V L V
Sbjct: 68 EETVSRIQGQ--GSCVSLTVVD 87
Score = 55.4 bits (134), Expect = 1e-09
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 600 TIPIVKGAMGFGFTI-----ADSSHGQKVKKILDR---QRCKNLAEGDILIEINNLNVRN 651
+ + KG GFGF + D GQ + ++ ++ + GD L+ + +V
Sbjct: 6 CLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEG 64
Query: 652 MCHGEVVQVLKDC 664
+ H E V ++
Sbjct: 65 LGHEETVSRIQGQ 77
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 98.6 bits (246), Expect = 1e-24
Identities = 19/101 (18%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 1018 ASHREYEEGGEHDEQYHAIELSRG-TRGFGFSIRGGREFQNMALFVLQIAENGPAALDGH 1076
S + L + GF+IRGG+ + +F+ ++ + A G
Sbjct: 1 GSSGSSGNNELTQFLPRIVTLKKPPGAQLGFNIRGGKA-SQLGIFISKVIPDSDAHRAG- 58
Query: 1077 LKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRG 1117
L+ GD+++ +N ++ +++ H++A+EI++ + + ++
Sbjct: 59 LQEGDQVLAVNDVDFQDIEHSKAVEILKTARE-ISMRVRFF 98
Score = 74.3 bits (183), Expect = 4e-16
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 822 VITLLRQEN-GFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNS 880
++TL + GF I GG + I ++P A G L GD++++V+++ +
Sbjct: 18 IVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDI 76
Query: 881 SHHHVVELMGKASVYGRVTLGIRRKVMPPA 910
H VE++ A +++ +R P +
Sbjct: 77 EHSKAVEILKTA---REISMRVRFFSGPSS 103
Score = 67.4 bits (165), Expect = 1e-13
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 920 PYDVTITRRENEGFGFVIIS-SLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIM 978
P VT+ + GF I ++ G I ++I DS A R+G L GD +LAVN VD
Sbjct: 16 PRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQ 74
Query: 979 SLHHGEIVNLIKDSGYCVTLTI---GAPISG 1006
+ H + V ++K + +++ + P SG
Sbjct: 75 DIEHSKAVEILKTARE-ISMRVRFFSGPSSG 104
Score = 60.1 bits (146), Expect = 3e-11
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 446 RGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
LGF I GG S+ I V+P+ A G LQ GD ++ VND H V +
Sbjct: 27 AQLGFNIRGGKASQLGIF-ISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEI 84
Query: 506 FQSISPGETVQLEV 519
++ + + V
Sbjct: 85 LKT---AREISMRV 95
Score = 48.1 bits (115), Expect = 6e-07
Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 585 PSSTDLILESDSEYLTIPIVKG-AMGFGFTIA---DSSHGQKVKKILDRQRCKN--LAEG 638
S+ + + + K GF I S G + K++ L EG
Sbjct: 3 SGSSGNNELTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEG 62
Query: 639 DILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
D ++ +N+++ +++ H + V++LK + E ++ V+
Sbjct: 63 DQVLAVNDVDFQDIEHSKAVEILKTAR---EISMRVRFFS 99
Score = 38.1 bits (89), Expect = 0.002
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKY-LEEKAIILEIQGQKVAGY 83
VTL PP L F++ GG S +++ + + A + L+E +L +
Sbjct: 19 VTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSD--AHRAGLQEGDQVLAVNDVDFQDI 76
Query: 84 TRRDTIAWLNHCCRSGKTLTLR 105
+ L ++ + +++R
Sbjct: 77 EHSKAVEIL----KTAREISMR 94
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 98.7 bits (246), Expect = 1e-24
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+ + ++ GG + + V + E G A G + GDEI+ ING + T
Sbjct: 21 LLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYT 80
Query: 1096 HAEAIEIIRN----GDSTVRLLIKR 1116
AEA ++ G + L++
Sbjct: 81 LAEAEAALQKAWNQGGDWIDLVVAV 105
Score = 90.2 bits (224), Expect = 1e-21
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Query: 429 PDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVY 488
P+++ G+ + +K L + GG DS + + +V G A G + GD ++
Sbjct: 11 PEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMA 70
Query: 489 VNDKCVLGYTHHDMVSVFQSI--SPGETVQLEVCRGYPLPFD 528
+N K V YT + + Q G+ + L V P +D
Sbjct: 71 INGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYD 112
Score = 77.9 bits (192), Expect = 3e-17
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 821 MVITLLRQENGFGFRIVGGTEEGSQ-VSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLN 879
+ + +++E + GG + V + + GGAA+ G + GDEI++++ V +
Sbjct: 19 VRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTD 78
Query: 880 SSHHHVVELMGKA--SVYGRVTLGIRRKVMPPAE 911
+ + KA + L + PP E
Sbjct: 79 YTLAEAEAALQKAWNQGGDWIDLVVAVC--PPKE 110
Score = 63.2 bits (154), Expect = 4e-12
Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 924 TITRRENEGFGFVIISSLN--KAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
+ ++ + ++ + + E A+R G + GD I+A+N +
Sbjct: 21 LLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYT 80
Query: 982 HGEIVNLIKDS----GYCVTLTI 1000
E ++ + G + L +
Sbjct: 81 LAEAEAALQKAWNQGGDWIDLVV 103
Score = 47.4 bits (113), Expect = 1e-06
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 593 ESDSEYLTIPIVKGAMGFGFTIA---DSSHGQ-KVKKILDR---QRCKNLAEGDILIEIN 645
+ + + + +K + DS G+ V + + +R + +GD ++ IN
Sbjct: 13 QIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAIN 72
Query: 646 NLNVRNMCHGEVVQVLK 662
V + E L+
Sbjct: 73 GKIVTDYTLAEAEAALQ 89
Score = 28.6 bits (64), Expect = 5.4
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 22 ETPVTLTVPPDGSLNFSVGGGSDSGEFA-YVTNINKEKVKGAEKYLEEKAIILEIQGQKV 80
+ L + +GSL+ ++ GG DS V+ + + + + I+ I G+ V
Sbjct: 17 KDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIV 76
Query: 81 AGYTRRDTIAWL-NHCCRSGKTLTL 104
YT + A L + G + L
Sbjct: 77 TDYTLAEAEAALQKAWNQGGDWIDL 101
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain,
PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 97.0 bits (242), Expect = 3e-24
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+ +G G+GF++ + F+ + + PA G L+ D IVE+NG+ +
Sbjct: 13 CTMKKGPSGYGFNLHSDKS--KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69
Query: 1096 HAEAIEIIRNGDSTVRLLI 1114
H + + IR G +LL+
Sbjct: 70 HGDVVSAIRAGGDETKLLV 88
Score = 86.2 bits (214), Expect = 2e-20
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
P T+ ++ G+GF + S +K G I + DSPA+ SG L D I+ VN V +
Sbjct: 10 PRLCTM-KKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEG 67
Query: 980 LHHGEIVNLIKDSGYCVTLTIGAP 1003
HG++V+ I+ G L +
Sbjct: 68 KQHGDVVSAIRAGGDETKLLVVDR 91
Score = 72.0 bits (177), Expect = 2e-15
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSS 881
+ T+ + +G+GF + + Q I + P A+ G L D IV V+ + +
Sbjct: 12 LCTMKKGPSGYGFNLHSDKSKPGQF-IRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69
Query: 882 HHHVVELMGKASVYGRVTLGIRRK 905
H VV + L + +
Sbjct: 70 HGDVVSAIRAGG--DETKLLVVDR 91
Score = 66.2 bits (162), Expect = 2e-13
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 427 LNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVL 486
++P ++ R+ ++ K G GF + +F I+SV P+ PA G L+ D +
Sbjct: 2 IDPFTMLRPRL-CTMKKGPSGYGFNLHSDKSKPGQF--IRSVDPDSPAEASG-LRAQDRI 57
Query: 487 VYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
V VN C+ G H D+VS + + G+ +L V
Sbjct: 58 VEVNGVCMEGKQHGDVVSAIR--AGGDETKLLVVD 90
Score = 56.6 bits (137), Expect = 5e-10
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 600 TIPIVKGAMGFGFTIA--DSSHGQKVKKILDR---QRCKNLAEGDILIEINNLNVRNMCH 654
+ KG G+GF + S GQ ++ + + L D ++E+N + + H
Sbjct: 12 LCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQH 70
Query: 655 GEVVQVLKDC 664
G+VV ++
Sbjct: 71 GDVVSAIRAG 80
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 96.7 bits (241), Expect = 3e-24
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 1031 EQYHAIELSR--GTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEING 1088
+ H + L + G FGFS+ G ++V I GP L G LK D ++++N
Sbjct: 5 VELHKVTLYKDSGMEDFGFSVADGL--LEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNH 61
Query: 1089 INTKNMTHAEAIEIIRNGDSTVRLLIKRG 1117
+ T++ + +I + + L+I R
Sbjct: 62 VRTRDFDCCLVVPLIAESGNKLDLVISRN 90
Score = 83.6 bits (207), Expect = 1e-19
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 920 PYDVTITR-RENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIM 978
+ VT+ + E FGF + L + G + I P D G L D +L VNHV
Sbjct: 7 LHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTR 65
Query: 979 SLHHGEIVNLIKDSGYCVTLTI 1000
+V LI +SG + L I
Sbjct: 66 DFDCCLVVPLIAESGNKLDLVI 87
Score = 67.0 bits (164), Expect = 8e-14
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 823 ITLLR--QENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNS 880
+TL + FGF + G E + +I P G DL G L D ++ V+++ +
Sbjct: 10 VTLYKDSGMEDFGFSVADGLLEKGVY-VKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDF 67
Query: 881 SHHHVVELMGKASVYGRVTLGIRR 904
VV L+ ++ ++ L I R
Sbjct: 68 DCCLVVPLIAESG--NKLDLVISR 89
Score = 62.4 bits (152), Expect = 4e-12
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 443 KSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
+ GF++ G K + +K++ P GP L G L+ D L+ VN + +
Sbjct: 16 SGMEDFGFSVADGLLEKGVY--VKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLV 72
Query: 503 VSVFQSISPGETVQLEVCRG 522
V + G + L + R
Sbjct: 73 VPLIA--ESGNKLDLVISRN 90
Score = 54.7 bits (132), Expect = 2e-09
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 594 SDSEYLTIPIVKGAM--GFGFTIAD--SSHGQKVKKILDR---QRCKNLAEGDILIEINN 646
+ E + + K + FGF++AD G VK I L D L+++N+
Sbjct: 3 TPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNH 61
Query: 647 LNVRNMCHGEVVQVLKDCQRNLEANIIVQRS 677
+ R+ VV ++ + L+ +++ R+
Sbjct: 62 VRTRDFDCCLVVPLIAESGNKLD--LVISRN 90
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 96.6 bits (241), Expect = 3e-24
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+ L + + +R G + +FV ++ G A DG+L GD I++ING T+NM+
Sbjct: 4 VLLMKSRANEEYGLRLGSQ-----IFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMS 58
Query: 1096 HAEAIEIIRNGDSTVRLLIKR 1116
+A ++I ++L++ R
Sbjct: 59 LTDARKLIEKSRGKLQLVVLR 79
Score = 77.4 bits (191), Expect = 2e-17
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 820 VMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLN 879
++ + L++ + + G SQ+ + + G A DG L GD I+ ++ N
Sbjct: 1 MIGVLLMKSRANEEYGLRLG----SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTEN 56
Query: 880 SSHHHVVELMGKASVYGRVTLGIRRKV 906
S +L+ K+ G++ L + R +
Sbjct: 57 MSLTDARKLIEKSR--GKLQLVVLRDL 81
Score = 70.0 bits (172), Expect = 7e-15
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Query: 437 IHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLG 496
I L+KS + + G + +K + G A +G+L GD+++ +N
Sbjct: 2 IGVLLMKSRANEEYGLRLGSQ-----IFVKEMTRTGLATKDGNLHEGDIILKINGTVTEN 56
Query: 497 YTHHDMVSVFQSISPGETVQLEVCR 521
+ D + + +QL V R
Sbjct: 57 MSLTDARKLIE--KSRGKLQLVVLR 79
Score = 66.2 bits (162), Expect = 2e-13
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 923 VTITR-RENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
V + + R NE +G + S + + + A + G LH GD IL +N ++
Sbjct: 4 VLLMKSRANEEYGLRLGSQI-----FVKEMTRTGLATKDGNLHEGDIILKINGTVTENMS 58
Query: 982 HGEIVNLIKDSGYCVTLTIGAPISG 1006
+ LI+ S + L + +
Sbjct: 59 LTDARKLIEKSRGKLQLVVLRDLEH 83
Score = 51.9 bits (125), Expect = 2e-08
Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 599 LTIPIVKGAMGFGFTIADSSHGQKVKKILDRQ---RCKNLAEGDILIEINNLNVRNMCHG 655
+ + ++K + + S VK++ + NL EGDI+++IN NM
Sbjct: 2 IGVLLMKSRANEEYGLRLGS-QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLT 60
Query: 656 EVVQVLKDCQRNLEANIIVQR 676
+ ++++ + L ++V R
Sbjct: 61 DARKLIEKSRGKL--QLVVLR 79
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 97.8 bits (244), Expect = 3e-24
Identities = 20/111 (18%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 1016 SAASHREYEEGGEHDEQYHAIELSRGT-RGFGFSIRGGREFQ--NMALFVLQIAENGPAA 1072
S+ E + + + G ++ GG + ++ ++V+ + G +
Sbjct: 8 SSGVDLGTENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVIS 67
Query: 1073 LDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRG--GSVV 1121
DG +K GD ++ ++G+ ++ +EA+ +++ S++ L GS+V
Sbjct: 68 RDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKEGSIV 118
Score = 80.1 bits (198), Expect = 4e-18
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 446 RGLGFTIVGGDDSKEEFLQI--KSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMV 503
LG T+ GG +E L I SV P G + +G ++TGD+L+ V+ + + + V
Sbjct: 36 ESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAV 95
Query: 504 SVFQSISPGETVQLEVCRGYP 524
++ + ++ L+
Sbjct: 96 ALLK--RTSSSIVLKALEVKE 114
Score = 78.6 bits (194), Expect = 2e-17
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 818 SDVMVITLLRQE-NGFGFRIVGGTEEGSQ---VSIGHIVPGGAADLDGRLCTGDEIVSVD 873
V+ + + G + GG + + + PGG DGR+ TGD +++VD
Sbjct: 23 MHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVD 82
Query: 874 NLSVLNSSHHHVVELMGKASVYGRVTLGIRR 904
+ + S V L+ + S + L
Sbjct: 83 GVELTEVSRSEAVALLKRTS--SSIVLKALE 111
Score = 73.6 bits (181), Expect = 1e-15
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 920 PYDVTITRRENEGFGFVII----SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHV 975
V I + E G + + + R G + GD +L V+ V
Sbjct: 25 EKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGV 84
Query: 976 DIMSLHHGEIVNLIKDSGYCVTLTIGAPISG 1006
++ + E V L+K + + L G
Sbjct: 85 ELTEVSRSEAVALLKRTSSSIVLKALEVKEG 115
Score = 54.7 bits (132), Expect = 4e-09
Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 12/104 (11%)
Query: 585 PSSTDLILESDSEYLTIPIVKG-AMGFGFTIA---DSSHGQK---VKKILDRQ---RCKN 634
T+ + + I K G T+A V + R
Sbjct: 12 DLGTENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGR 71
Query: 635 LAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
+ GDIL+ ++ + + + E V +LK + +
Sbjct: 72 IKTGDILLNVDGVELTEVSRSEAVALLKRTSS--SIVLKALEVK 113
Score = 35.1 bits (81), Expect = 0.028
Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 2 HKRPNKLDNLTAGGTHWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFA---YVTNINKEK 58
H + +D T E V + P SL +V GG+ E+ YV ++
Sbjct: 5 HHHSSGVDLGTENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGG 64
Query: 59 VKGAEKYLEEKAIILEIQGQKVAGYTRRDTIAWLNHCCRSGKTLTLR 105
V + ++ I+L + G ++ +R + +A L R+ ++ L+
Sbjct: 65 VISRDGRIKTGDILLNVDGVELTEVSRSEAVALLK---RTSSSIVLK 108
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 97.1 bits (242), Expect = 5e-24
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 814 SVEYSDVMVITLLRQENGFGFRIVGGTE--EGSQVSIGHIVPGGAADLDGRLCTGDEIVS 871
++ + + +E G G +I+GG EG V I ++PGG DGRL GD++VS
Sbjct: 9 PLDRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVS 68
Query: 872 VDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPP 909
++ S++ S ++ +A + I P
Sbjct: 69 INKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSGP 106
Score = 95.6 bits (238), Expect = 1e-23
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMAL-FVLQIAENGPAALDGHLKVGDEIVEINGINTKNM 1094
+ G G I GG L ++ ++ G DG LK GD++V IN + +
Sbjct: 18 VITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGV 77
Query: 1095 THAEAIEIIRN----GDSTVRLLIKRGG 1118
+ EA II +S + R G
Sbjct: 78 SFEEAKSIITRAKLRSESPWEIAFIRSG 105
Score = 86.3 bits (214), Expect = 3e-20
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 434 GERIHSSLVKSLRGLGFTIVGGDDSKE-EFLQIKSVVPNGPAALEGHLQTGDVLVYVNDK 492
V GLG I+GG + E + I V+P G +G L+ GD LV +N +
Sbjct: 13 DPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKE 72
Query: 493 CVLGYTHHDMVSVFQSIS--PGETVQLEVCRGYP 524
++G + + S+ ++ R P
Sbjct: 73 SMIGVSFEEAKSIITRAKLRSESPWEIAFIRSGP 106
Score = 62.1 bits (151), Expect = 8e-12
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 9/93 (9%)
Query: 923 VTITRRENEGFGFVII---SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
IT + G G I+ + I +I + G L GD ++++N ++
Sbjct: 17 RVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIG 76
Query: 980 LHHGEIVNLIKDSGY------CVTLTIGAPISG 1006
+ E ++I + + P SG
Sbjct: 77 VSFEEAKSIITRAKLRSESPWEIAFIRSGPSSG 109
Score = 54.4 bits (131), Expect = 4e-09
Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 8/101 (7%)
Query: 586 SSTDLILESDSEYLTIPIVKGAMGFGFTIA---DSSHGQ--KVKKILDR---QRCKNLAE 637
S + + V G G I + + G + +++ + L
Sbjct: 3 SGSSGSPLDRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKP 62
Query: 638 GDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
GD L+ IN ++ + E ++ + E+ + R
Sbjct: 63 GDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR 103
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 95.9 bits (239), Expect = 6e-24
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 1032 QYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINT 1091
+Y I + RG GFGF+I + V + GPA G L+ D ++++N
Sbjct: 3 RYRQITIPRGKDGFGFTICCDSP-----VRVQAVDSGGPAERAG-LQQLDTVLQLNERPV 56
Query: 1092 KNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAP 1123
++ E IR+ S + LL+ R V P
Sbjct: 57 EHWKCVELAHEIRSCPSEIILLVWRMVPQVKP 88
Score = 72.0 bits (177), Expect = 1e-15
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
+TI R +GFGF I + + + PA+R+G L D +L +N +
Sbjct: 4 YRQITI-PRGKDGFGFTICCD---SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEH 58
Query: 980 LHHGEIVNLIKDSGYCVTLTIGAPIS 1005
E+ + I+ + L + +
Sbjct: 59 WKCVELAHEIRSCPSEIILLVWRMVP 84
Score = 68.5 bits (168), Expect = 2e-14
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSS 881
IT+ R ++GFGF I + V + + GG A+ G L D ++ ++ V +
Sbjct: 6 QITIPRGKDGFGFTICCDSP----VRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWK 60
Query: 882 HHHVVELMGKASVYGRVTLGIRR 904
+ + + L + R
Sbjct: 61 CVELAHEIRSCP--SEIILLVWR 81
Score = 65.8 bits (161), Expect = 2e-13
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
+ + G GFTI +++++V GPA G LQ D ++ +N++ V +
Sbjct: 9 IPRGKDGFGFTICCDSP-----VRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCV 62
Query: 501 DMVSVFQSISPGETVQLEVCRGYPLP 526
++ +S + L V R P
Sbjct: 63 ELAHEIRSC--PSEIILLVWRMVPQV 86
Score = 58.5 bits (142), Expect = 9e-11
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 596 SEYLTIPIVKGAMGFGFTIADSSHGQKVKKILDRQRCKN--LAEGDILIEINNLNVRNMC 653
Y I I +G GFGFTI +V+ + + L + D ++++N V +
Sbjct: 2 MRYRQITIPRGKDGFGFTIC-CDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWK 60
Query: 654 HGEVVQVLKDCQRNLEANIIVQR 676
E+ ++ C E ++V R
Sbjct: 61 CVELAHEIRSCPS--EIILLVWR 81
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 96.3 bits (240), Expect = 7e-24
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 1023 YEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQN-------MALFVLQIAENGPAALDG 1075
G E +Q + + + GFSI GG + +FV ++ GPA
Sbjct: 2 SHMGHELAKQEIRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SK 58
Query: 1076 HLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
L+ GD+I++ NG + N+ H +A+ +++ +TV L+I R
Sbjct: 59 LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 99
Score = 68.2 bits (167), Expect = 4e-14
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 923 VTITRRENEGFGFVIISSLNKAGST---------IGRIIEDSPADRSGELHLGDHILAVN 973
+ + ++ GF I + G+ + R+ + PA L GD I+ N
Sbjct: 13 IRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQAN 70
Query: 974 HVDIMSLHHGEIVNLIKDSGYCVTLTIGAPIS 1005
+++ HG+ V+L+K V L I +S
Sbjct: 71 GYSFINIEHGQAVSLLKTFQNTVELIIVREVS 102
Score = 67.5 bits (165), Expect = 8e-14
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Query: 428 NPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQ-------IKSVVPNGPAALEGHL 480
EL + I + K LGF+I GG + + + V P GPA L
Sbjct: 4 MGHELAKQEIRVRVEKD-PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLL 60
Query: 481 QTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
Q GD ++ N + H VS+ ++ TV+L + R
Sbjct: 61 QPGDKIIQANGYSFINIEHGQAVSLLKTF--QNTVELIIVR 99
Score = 64.8 bits (158), Expect = 9e-13
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Query: 826 LRQENGFGFRIVGGTEEGSQ--------VSIGHIVPGGAADLDGRLCTGDEIVSVDNLSV 877
+ ++ GF I GG + + + P G A L GD+I+ + S
Sbjct: 17 VEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSF 74
Query: 878 LNSSHHHVVELMGKASVYGRVTLGIRRKV 906
+N H V L+ V L I R+V
Sbjct: 75 INIEHGQAVSLLKTFQ--NTVELIIVREV 101
Score = 50.1 bits (120), Expect = 1e-07
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 15/96 (15%)
Query: 593 ESDSEYLTIPIVKGAMGFGFTIADSSHGQK-----------VKKILDRQRC-KNLAEGDI 640
E + + + + K GF+I+ G+ V ++ K L GD
Sbjct: 7 ELAKQEIRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDK 65
Query: 641 LIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQR 676
+I+ N + N+ HG+ V +LK Q +I+ R
Sbjct: 66 IIQANGYSFINIEHGQAVSLLKTFQN--TVELIIVR 99
Score = 35.5 bits (82), Expect = 0.013
Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 17/108 (15%)
Query: 13 AGGTHWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFA--------YVTNINKEKVKGAEK 64
+ H K+ + + V D L FS+ GG +VT + E A K
Sbjct: 2 SHMGHELAKQE-IRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGP--ASK 58
Query: 65 YLEEKAIILEIQGQKVAGYTRRDTIAWLNHCCRSGKTLTL---RTVSS 109
L+ I++ G ++ L T+ L R VSS
Sbjct: 59 LLQPGDKIIQANGYSFINIEHGQAVSLLKTF---QNTVELIIVREVSS 103
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 96.9 bits (241), Expect = 7e-24
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 1025 EGGEHDEQYHAIELSRGTRG-FGFSIRGGREFQNMALFVLQIAENGPAAL-DGHLKVGDE 1082
GG + I + G FGF+++GG + Q M + V ++A PA L L GD+
Sbjct: 8 NGGIPHDNLVLIRMKPDENGRFGFNVKGGYD-QKMPVIVSRVAPGTPADLCVPRLNEGDQ 66
Query: 1083 IVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAPTDNAAGIYSSDTSS 1137
+V ING + TH + + I+ + +V P + S SS
Sbjct: 67 VVLINGRDIAEHTHDQVVLFIKASCERHSGELML---LVRPNAVYDVVEESGPSS 118
Score = 95.3 bits (237), Expect = 2e-23
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 814 SVEYSDVMVITLLRQENG-FGFRIVGGTEEGSQVSIGHIVPGGAADL-DGRLCTGDEIVS 871
+ + ++++I + ENG FGF + GG ++ V + + PG ADL RL GD++V
Sbjct: 10 GIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVL 69
Query: 872 VDNLSVLNSSHHHVVELMGKA--SVYGRVTLGIRRKVMPPAETTS 914
++ + +H VV + + G + L +R + S
Sbjct: 70 INGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEES 114
Score = 73.8 bits (181), Expect = 7e-16
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 918 GYPYDVTITRRENEGFGFVIIS-SLNKAGSTIGRIIEDSPADRS-GELHLGDHILAVNHV 975
+ + EN FGF + K + R+ +PAD L+ GD ++ +N
Sbjct: 14 DNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGR 73
Query: 976 DIMSLHHGEIVNLIKDSGYCVTLTI 1000
DI H ++V IK S + +
Sbjct: 74 DIAEHTHDQVVLFIKASCERHSGEL 98
Score = 60.3 bits (146), Expect = 4e-11
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAAL-EGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
GF + GG D K + + V P PA L L GD +V +N + + +TH +V
Sbjct: 28 RFGFNVKGGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLF 86
Query: 506 FQS--ISPGETVQLEVCRGYPLPFD 528
++ + L V
Sbjct: 87 IKASCERHSGELMLLVRPNAVYDVV 111
Score = 52.6 bits (126), Expect = 2e-08
Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 10/104 (9%)
Query: 593 ESDSEYLTIPIVKGAMG-FGFTI---ADSSHGQKVKKILDRQ---RCK-NLAEGDILIEI 644
+ I + G FGF + D V ++ C L EGD ++ I
Sbjct: 11 IPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLI 70
Query: 645 NNLNVRNMCHGEVVQVLKDC--QRNLEANIIVQRSRLQHKKTSP 686
N ++ H +VV +K + + E ++V+ + +
Sbjct: 71 NGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEES 114
Score = 36.4 bits (84), Expect = 0.010
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 19 QDKETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKY---LEEKAIILEI 75
D + + +G F+V GG D V+ + A+ L E ++ I
Sbjct: 13 HDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTP--ADLCVPRLNEGDQVVLI 70
Query: 76 QGQKVAGYTRRDTIAWLNHCCRSGK---TLTLR 105
G+ +A +T + ++ C L +R
Sbjct: 71 NGRDIAEHTHDQVVLFIKASCERHSGELMLLVR 103
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 96.8 bits (241), Expect = 1e-23
Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 10/119 (8%)
Query: 1009 ASSTTSVSAASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQ---NMALFVLQI 1065
+ S+ G+ G G S++G + + ++ +F+ I
Sbjct: 3 SGSSGLKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSI 62
Query: 1066 AENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRN-------GDSTVRLLIKRG 1117
G A DG L++ D+++ +NG ++ EA+E +R ++L+I R
Sbjct: 63 IHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRR 121
Score = 86.4 bits (214), Expect = 4e-20
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Query: 803 GLPRVRPTNIKSVEYSDVMVITLLRQENGFGFRIVGGTEEGSQVSIG----HIVPGGAAD 858
G P +++S E + + G G + G + +G I+ GGAA
Sbjct: 10 GEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAF 69
Query: 859 LDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKAS-----VYGRVTLGIRRKVMP 908
DGRL D++++V+ ++L S+H +E + ++ + G + L I R+ P
Sbjct: 70 KDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGP 124
Score = 76.0 bits (187), Expect = 2e-16
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 9/120 (7%)
Query: 412 STSNRSNNDENYFFTLNPDELIGERIHSSLVKS-LRGLGFTIVGGDDSKEEFLQ---IKS 467
S+ + E + L+ + + L S GLG ++ G + IKS
Sbjct: 2 SSGSSGLKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKS 61
Query: 468 VVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGE-----TVQLEVCRG 522
++ G A +G L+ D L+ VN + +LG ++H+ + + E +QL + R
Sbjct: 62 IIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRR 121
Score = 67.5 bits (165), Expect = 2e-13
Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 12/116 (10%)
Query: 898 VTLGIRRKVMPPAETTSMMLGYPYDVTITRRENEGFGFVII-----SSLNKAGSTIGRII 952
+ G++ + A + ++ + + G G + + G I II
Sbjct: 4 GSSGLKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSII 63
Query: 953 EDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYC-------VTLTIG 1001
A + G L + D ++AVN ++ + E + ++ S + L I
Sbjct: 64 HGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVIL 119
Score = 51.3 bits (123), Expect = 8e-08
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 13/96 (13%)
Query: 582 LERPSSTDLILESDSEYLTIPIV---KGAMGFGFTIA---DSSHGQK----VKKILDR-- 629
L+ + SE LT+ I G+ G G ++ G +K I+
Sbjct: 8 LKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGA 67
Query: 630 -QRCKNLAEGDILIEINNLNVRNMCHGEVVQVLKDC 664
+ L D LI +N + + E ++ L+
Sbjct: 68 AFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRS 103
Score = 29.4 bits (66), Expect = 2.7
Identities = 9/72 (12%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFA----YVTNINKEKVKGAEKYLEEKAIILEIQGQKV 80
+ L L S+ G ++ +I + L ++ + G+ +
Sbjct: 29 IPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETL 88
Query: 81 AGYTRRDTIAWL 92
G + + + L
Sbjct: 89 LGKSNHEAMETL 100
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 95.2 bits (237), Expect = 1e-23
Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+ L + + + +R +FV +I+++ AA DG+++ GD +++ING T+NM+
Sbjct: 6 VTLVKSAKNEEYGLRLASH-----IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMS 60
Query: 1096 HAEAIEIIRNGDSTVRLLIKRGGS 1119
+A +I ++++++R
Sbjct: 61 LTDAKTLIERSKGKLKMVVQRDER 84
Score = 73.2 bits (180), Expect = 5e-16
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 918 GYPYDVTITR-RENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVD 976
P VT+ + +NE +G + S + I +DS A R G + GD +L +N
Sbjct: 1 AKPTKVTLVKSAKNEEYGLRLAS-----HIFVKEISQDSLAARDGNIQEGDVVLKINGTV 55
Query: 977 IMSLHHGEIVNLIKDSGYCVTLTI 1000
++ + LI+ S + + +
Sbjct: 56 TENMSLTDAKTLIERSKGKLKMVV 79
Score = 69.3 bits (170), Expect = 1e-14
Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSS 881
+ + +G R+ + + I A DG + GD ++ ++ N S
Sbjct: 7 TLVKSAKNEEYGLRLASH------IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMS 60
Query: 882 HHHVVELMGKASVYGRVTLGIRRK 905
L+ ++ G++ + ++R
Sbjct: 61 LTDAKTLIERSK--GKLKMVVQRD 82
Score = 68.2 bits (167), Expect = 4e-14
Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 434 GERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKC 493
+ +LVKS + + + + +K + + AA +G++Q GDV++ +N
Sbjct: 1 AKPTKVTLVKSAKNEEYGLRLASH-----IFVKEISQDSLAARDGNIQEGDVVLKINGTV 55
Query: 494 VLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDPN 533
+ D ++ + +++ V R N P+
Sbjct: 56 TENMSLTDAKTLIE--RSKGKLKMVVQRD-ERATLLNVPD 92
Score = 53.9 bits (130), Expect = 3e-09
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 596 SEYLTIPIVKGAMGFGFTIADSSHGQKVKKILDRQ---RCKNLAEGDILIEINNLNVRNM 652
++ + +VK A + + +S VK+I R N+ EGD++++IN NM
Sbjct: 1 AKPTKVTLVKSAKNEEYGLRLAS-HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENM 59
Query: 653 CHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSP 686
+ +++ + L ++VQR P
Sbjct: 60 SLTDAKTLIERSKGKL--KMVVQRDERATLLNVP 91
Score = 31.6 bits (72), Expect = 0.26
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 21 KETPVTLT-VPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQK 79
K T VTL + + +V I+++ + + ++E ++L+I G
Sbjct: 2 KPTKVTLVKSAKNEEYGLRLASHI------FVKEISQDSLAARDGNIQEGDVVLKINGTV 55
Query: 80 VAGYTRRDTIAWLNHCCRSGKTLTL 104
+ D + RS L +
Sbjct: 56 TENMSLTDAKTLIE---RSKGKLKM 77
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 94.6 bits (236), Expect = 1e-23
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+E++RG G+GF++ G + + PA G L+ GD+I+ +N IN K +
Sbjct: 6 VEVARGRAGYGFTLSGQAP-----CVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKAS 59
Query: 1096 HAEAIEIIRNGDSTVRLLIKRG 1117
H + +++I + ++I G
Sbjct: 60 HEDVVKLIGKCSGVLHMVIAEG 81
Score = 80.7 bits (200), Expect = 1e-18
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
V + R G+GF + A + ++ SPAD G L GD ILAVN +++
Sbjct: 3 VRSVEVARGRA-GYGFTLSGQ---APCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKK 57
Query: 980 LHHGEIVNLIKDSGYCVTLTIGAPI 1004
H ++V LI + + I +
Sbjct: 58 ASHEDVVKLIGKCSGVLHMVIAEGV 82
Score = 72.6 bits (179), Expect = 8e-16
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSS 881
+ + R G+GF + G + + ++ G AD G L GD+I++V+ ++V +S
Sbjct: 5 SVEVARGRAGYGFTLSGQ----APCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKAS 59
Query: 882 HHHVVELMGKASVYGRVTLGIRR 904
H VV+L+GK S G + + I
Sbjct: 60 HEDVVKLIGKCS--GVLHMVIAE 80
Score = 64.2 bits (157), Expect = 6e-13
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
+ + G GFT+ G + V+ PA G L+ GD ++ VN+ V +H
Sbjct: 8 VARGRAGYGFTLSGQAP-----CVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHE 61
Query: 501 DMVSVFQSISPGETVQLEVCRG 522
D+V + + + + G
Sbjct: 62 DVVKLIG--KCSGVLHMVIAEG 81
Score = 58.4 bits (142), Expect = 9e-11
Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 600 TIPIVKGAMGFGFTIADSSHGQKVKKILDR---QRCKNLAEGDILIEINNLNVRNMCHGE 656
++ + +G G+GFT++ + ++ L GD ++ +N +NV+ H +
Sbjct: 5 SVEVARGRAGYGFTLS-GQAPCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHED 62
Query: 657 VVQVLKDCQRNLEANIIVQRS 677
VV+++ C L +++
Sbjct: 63 VVKLIGKCSGVLH--MVIAEG 81
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 95.7 bits (238), Expect = 1e-23
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 1025 EGGEHDEQYHAIELSRGTRG-FGFSIRGGREFQNMALFVLQIAENGPAAL-DGHLKVGDE 1082
GG + I + G FGF+++GG + Q M + V ++A PA L L GD+
Sbjct: 10 NGGIPHDNLVLIRMKPDENGRFGFNVKGGYD-QKMPVIVSRVAPGTPADLCVPRLNEGDQ 68
Query: 1083 IVEINGINTKNMTHAEAIEIIRNG----DSTVRLLIK 1115
+V ING + TH + + I+ + LL++
Sbjct: 69 VVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVR 105
Score = 89.5 bits (222), Expect = 2e-21
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 809 PTNIKSVEYSDVMVITLLRQENG-FGFRIVGGTEEGSQVSIGHIVPGGAADL-DGRLCTG 866
PT + + ++++I + ENG FGF + GG ++ V + + PG ADL RL G
Sbjct: 7 PTPNGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEG 66
Query: 867 DEIVSVDNLSVLNSSHHHVVELMGKA--SVYGRVTLGIR 903
D++V ++ + +H VV + + G + L +R
Sbjct: 67 DQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVR 105
Score = 77.2 bits (190), Expect = 3e-17
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Query: 909 PAETTSMMLGYPYDVTITRRENEGFGFVIISSL-NKAGSTIGRIIEDSPADRS-GELHLG 966
P + + + EN FGF + K + R+ +PAD L+ G
Sbjct: 7 PTPNGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEG 66
Query: 967 DHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
D ++ +N DI H ++V IK S + +
Sbjct: 67 DQVVLINGRDIAEHTHDQVVLFIKASCERHSGEL 100
Score = 58.7 bits (142), Expect = 1e-10
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAAL-EGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
GF + GG D K + + V P PA L L GD +V +N + + +TH +V
Sbjct: 30 RFGFNVKGGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLF 88
Query: 506 FQSISPGETVQLEV 519
+ + E E+
Sbjct: 89 IK--ASCERHSGEL 100
Score = 50.2 bits (120), Expect = 1e-07
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 594 SDSEYLTIPIVKGAMG-FGFTI---ADSSHGQKVKKILDRQ---RCK-NLAEGDILIEIN 645
+ I + G FGF + D V ++ C L EGD ++ IN
Sbjct: 14 PHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLIN 73
Query: 646 NLNVRNMCHGEVVQVLKDCQRNLEANII 673
++ H +VV +K ++
Sbjct: 74 GRDIAEHTHDQVVLFIKASCERHSGELM 101
Score = 36.3 bits (84), Expect = 0.009
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 19 QDKETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKY---LEEKAIILEI 75
D + + +G F+V GG D V+ + A+ L E ++ I
Sbjct: 15 HDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTP--ADLCVPRLNEGDQVVLI 72
Query: 76 QGQKVAGYTRRDTIAWLNHCCRSGK---TLTLR 105
G+ +A +T + ++ C L +R
Sbjct: 73 NGRDIAEHTHDQVVLFIKASCERHSGELMLLVR 105
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 94.3 bits (235), Expect = 2e-23
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+ SR +G + +FV +I+++ AA DG+++ GD +++ING T+NM+
Sbjct: 6 LVKSRKNEEYGLRLASH-------IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMS 58
Query: 1096 HAEAIEIIRNGDSTVRLLIKR 1116
+A +I ++++++R
Sbjct: 59 LTDAKTLIERSKGKLKMVVQR 79
Score = 71.9 bits (177), Expect = 1e-15
Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSS 881
+ R+ +G R+ S + + I A DG + GD ++ ++ N S
Sbjct: 5 TLVKSRKNEEYGLRL------ASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMS 58
Query: 882 HHHVVELMGKASVYGRVTLGIRR 904
L+ ++ G++ + ++R
Sbjct: 59 LTDAKTLIERSK--GKLKMVVQR 79
Score = 70.0 bits (172), Expect = 6e-15
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 923 VTITR-RENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
VT+ + R+NE +G + S + + I +DS A R G + GD +L +N ++
Sbjct: 4 VTLVKSRKNEEYGLRLASHI-----FVKEISQDSLAARDGNIQEGDVVLKINGTVTENMS 58
Query: 982 HGEIVNLIKDSGYCVTLTI 1000
+ LI+ S + + +
Sbjct: 59 LTDAKTLIERSKGKLKMVV 77
Score = 61.5 bits (150), Expect = 6e-12
Identities = 14/88 (15%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 434 GERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKC 493
G ++ + G + + +K + + AA +G++Q GDV++ +N
Sbjct: 1 GSKVTLVKSRKNEEYGLRLASH-------IFVKEISQDSLAARDGNIQEGDVVLKINGTV 53
Query: 494 VLGYTHHDMVSVFQSISPGETVQLEVCR 521
+ D ++ + +++ V R
Sbjct: 54 TENMSLTDAKTLIE--RSKGKLKMVVQR 79
Score = 51.5 bits (124), Expect = 2e-08
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 599 LTIPIVKGAMGFGFTIADSSHGQKVKKILDR---QRCKNLAEGDILIEINNLNVRNMCHG 655
+T+ + +G +A VK+I R N+ EGD++++IN NM
Sbjct: 4 VTLVKSRKNEEYGLRLA---SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLT 60
Query: 656 EVVQVLKDCQRNLEANIIVQR 676
+ +++ + L ++VQR
Sbjct: 61 DAKTLIERSKGKL--KMVVQR 79
Score = 28.0 bits (63), Expect = 3.8
Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 10/83 (12%)
Query: 23 TPVTLT-VPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVA 81
+ VTL + + +V I+++ + + ++E ++L+I G
Sbjct: 2 SKVTLVKSRKNEEYGLRLASH------IFVKEISQDSLAARDGNIQEGDVVLKINGTVTE 55
Query: 82 GYTRRDTIAWLNHCCRSGKTLTL 104
+ D + RS L +
Sbjct: 56 NMSLTDAKTLIE---RSKGKLKM 75
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 95.7 bits (238), Expect = 2e-23
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 920 PYDVTITRRENEGFGFVIISSLNK-----AGSTIGRIIEDSPADRSGELHLGDHILAVNH 974
+V +T GFG + S+ + I I DSPA+R G L +GD ++A+N
Sbjct: 16 TTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAING 75
Query: 975 VDIMSLHHGEIVNLIKDSGYCVTLTI 1000
+ E L++DS +T+
Sbjct: 76 IPTEDSTFEEANQLLRDSSITSKVTL 101
Score = 95.3 bits (237), Expect = 3e-23
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 1009 ASSTTSVSAASHREYEEGGEHDEQYHAIELSR-GTRGFGFSIRGGR---EFQNMALFVLQ 1064
SS +S + H E + L+ GFG ++G E + +
Sbjct: 1 GSSGSSGAGQV--------VHTETTE-VVLTADPVTGFGIQLQGSVFATETLSSPPLISY 51
Query: 1065 IAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAPT 1124
I + PA G L++GD ++ INGI T++ T EA +++R+ T ++ ++ V
Sbjct: 52 IEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESV 111
Query: 1125 DNAAG 1129
++G
Sbjct: 112 IPSSG 116
Score = 86.8 bits (215), Expect = 2e-20
Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 814 SVEYSDVMVITLLRQEN-GFGFRIVGGT----EEGSQVSIGHIVPGGAADLDGRLCTGDE 868
V +++ + L GFG ++ G S I +I A+ G L GD
Sbjct: 10 QVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDR 69
Query: 869 IVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTS 914
+++++ + +S+ +L+ +S+ +VTL I V +S
Sbjct: 70 VMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSS 115
Score = 70.3 bits (172), Expect = 1e-14
Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 6/105 (5%)
Query: 426 TLNPDELIGERIHSSLVKS-LRGLGFTIVGGDDSKEEFLQ---IKSVVPNGPAALEGHLQ 481
+ + E L + G G + G + E I + + PA G LQ
Sbjct: 6 SGAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQ 65
Query: 482 TGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLP 526
GD ++ +N T + + + T ++ + + +
Sbjct: 66 IGDRVMAINGIPTEDSTFEEANQLLR--DSSITSKVTLEIEFDVA 108
Score = 56.0 bits (135), Expect = 2e-09
Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 596 SEYLTIPIVK-GAMGFGFTIA---DSSHGQK----VKKILDRQ---RCKNLAEGDILIEI 644
+E + + GFG + ++ + I RC L GD ++ I
Sbjct: 14 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAI 73
Query: 645 NNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPP 687
N + + E Q+L+D + + ++ + S
Sbjct: 74 NGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSG 116
Score = 32.9 bits (75), Expect = 0.15
Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 5/98 (5%)
Query: 12 TAGGTHWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFA----YVTNINKEKVKGAEKYLE 67
+ G + T V LT P + G + E ++ I + L+
Sbjct: 6 SGAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQ 65
Query: 68 EKAIILEIQGQKVAGYTRRDTIAWLNHCCRSGKTLTLR 105
++ I G T + L + K +TL
Sbjct: 66 IGDRVMAINGIPTEDSTFEEANQLLRDSSITSK-VTLE 102
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium, SGC,
unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 94.7 bits (236), Expect = 2e-23
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
L +G +G+GF++ + ++ + PAA G L+ D ++E+NG N + +
Sbjct: 8 CHLRKGPQGYGFNLHSDKSRPGQ--YIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLR 64
Query: 1096 HAEAIEIIRNGDSTVRLLIKRGGS 1119
HAE + I+ + RLL+ +
Sbjct: 65 HAEVVASIKAREDEARLLVVGPST 88
Score = 87.0 bits (216), Expect = 1e-20
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
P + R+ +G+GF + S ++ G I + SPA RSG L D ++ VN ++
Sbjct: 5 PRLCHL-RKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEG 62
Query: 980 LHHGEIVNLIKDSGYCVTLTIGAP 1003
L H E+V IK L + P
Sbjct: 63 LRHAEVVASIKAREDEARLLVVGP 86
Score = 71.5 bits (176), Expect = 3e-15
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSS 881
+ L + G+GF + Q I + PG A G L D ++ V+ +V
Sbjct: 7 LCHLRKGPQGYGFNLHSDKSRPGQY-IRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLR 64
Query: 882 HHHVVELMGKASVYGRVTLGIRRK 905
H VV + L +
Sbjct: 65 HAEVVASIKARE--DEARLLVVGP 86
Score = 65.8 bits (161), Expect = 2e-13
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
L K +G GF + ++ I+SV P PAA G L+ D L+ VN + V G H
Sbjct: 10 LRKGPQGYGFNLHSDKSRPGQY--IRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHA 66
Query: 501 DMVSVFQSISPGETVQLEVCR 521
++V+ + + + +L V
Sbjct: 67 EVVASIK--AREDEARLLVVG 85
Score = 56.5 bits (137), Expect = 4e-10
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 600 TIPIVKGAMGFGFTIA--DSSHGQKVKKILD---RQRCKNLAEGDILIEINNLNVRNMCH 654
+ KG G+GF + S GQ ++ + R L D LIE+N NV + H
Sbjct: 7 LCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRH 65
Query: 655 GEVVQVLKDCQRNLEANIIVQRSRL 679
EVV +K + ++ +RL
Sbjct: 66 AEVVASIKAREDEARLLVVGPSTRL 90
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 94.8 bits (236), Expect = 2e-23
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
Query: 1018 ASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHL 1077
S EG + + I + RG GFGF+I + V + GPA G L
Sbjct: 1 GSSGSSGEGDPENGEKLQITIRRGKDGFGFTICCDSP-----VRVQAVDSGGPAERAG-L 54
Query: 1078 KVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGG 1118
+ D ++++N ++ E IR+ S + LL+ R
Sbjct: 55 QQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVS 95
Score = 73.6 bits (181), Expect = 5e-16
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 923 VTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHH 982
+TI RR +GFGF I + + + PA+R+G L D +L +N +
Sbjct: 19 ITI-RRGKDGFGFTICCD---SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKC 73
Query: 983 GEIVNLIKDSGYCVTLTIGAP 1003
E+ + I+ + L +
Sbjct: 74 VELAHEIRSCPSEIILLVWRV 94
Score = 72.8 bits (179), Expect = 1e-15
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 821 MVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNS 880
+ IT+ R ++GFGF I + V + + GG A+ G L D ++ ++ V +
Sbjct: 17 LQITIRRGKDGFGFTICCDSP----VRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHW 71
Query: 881 SHHHVVELMGKASVYGRVTLGIRRKVMPPA 910
+ + + L + R P +
Sbjct: 72 KCVELAHEIRSCP--SEIILLVWRVSGPSS 99
Score = 66.3 bits (162), Expect = 2e-13
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 585 PSSTDLILESDSEYLTIPIVKGAMGFGFTIADSSHGQKVKKILDRQ--RCKNLAEGDILI 642
S+ + E L I I +G GFGFTI +V+ + L + D ++
Sbjct: 3 SGSSGEGDPENGEKLQITIRRGKDGFGFTIC-CDSPVRVQAVDSGGPAERAGLQQLDTVL 61
Query: 643 EINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQR 676
++N V + E+ ++ C E ++V R
Sbjct: 62 QLNERPVEHWKCVELAHEIRSCPS--EIILLVWR 93
Score = 63.6 bits (155), Expect = 2e-12
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 429 PDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVY 488
D GE++ ++ + G GFTI +++++V GPA G LQ D ++
Sbjct: 9 GDPENGEKLQITIRRGKDGFGFTICCDSP-----VRVQAVDSGGPAERAG-LQQLDTVLQ 62
Query: 489 VNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
+N++ V + ++ +S + L V R
Sbjct: 63 LNERPVEHWKCVELAHEIRSC--PSEIILLVWRV 94
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 95.3 bits (237), Expect = 3e-23
Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 4/118 (3%)
Query: 1030 DEQYHAIELS-RGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEING 1088
+ ++ L R G GF ++ + + + G A G ++ GD I+ +N
Sbjct: 6 EPNVISVRLFKRKVGGLGFLVKERVS--KPPVIISDLIRGGAAEQSGLIQAGDIILAVND 63
Query: 1089 INTKNMTHAEAIEIIRNGDSTVRL-LIKRGGSVVAPTDNAAGIYSSDTSSNYWSRAIS 1145
++++ A+E++R S + LI RG + ++ +
Sbjct: 64 RPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQPLG 121
Score = 87.6 bits (217), Expect = 1e-20
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 819 DVMVITLLRQEN-GFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSV 877
+V+ + L +++ G GF + + V I ++ GGAA+ G + GD I++V++ +
Sbjct: 8 NVISVRLFKRKVGGLGFLVKERVSKPP-VIISDLIRGGAAEQSGLIQAGDIILAVNDRPL 66
Query: 878 LNSSHHHVVELMGKASVYGRVTLGIRRK--VMPPAETTSMMLGYPYDVTITR 927
++ S+ +E++ + V L +R ETT G P + +T+
Sbjct: 67 VDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQ 118
Score = 83.0 bits (205), Expect = 6e-19
Identities = 19/80 (23%), Positives = 39/80 (48%)
Query: 921 YDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSL 980
V + +R+ G GF++ ++K I +I A++SG + GD ILAVN ++ L
Sbjct: 10 ISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 69
Query: 981 HHGEIVNLIKDSGYCVTLTI 1000
+ + +++ + +
Sbjct: 70 SYDSALEVLRGIASETHVVL 89
Score = 73.4 bits (180), Expect = 2e-15
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 443 KSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
+ + GLGF + I ++ G A G +Q GD+++ VND+ ++ ++
Sbjct: 17 RKVGGLGFLVKERVSKPPVI--ISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSA 74
Query: 503 VSVFQSISPGETVQLEV--CRGYPLPFDPNDPNTEVVTTVAVNAP 545
+ V + I+ V L + G+ + T+ V P
Sbjct: 75 LEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQP 119
Score = 60.3 bits (146), Expect = 6e-11
Identities = 17/116 (14%), Positives = 45/116 (38%), Gaps = 8/116 (6%)
Query: 593 ESDSEYLTIPIVK-GAMGFGFTIA--DSSHGQKVKKILDRQ---RCKNLAEGDILIEINN 646
+ +++ + K G GF + S + ++ + + GDI++ +N+
Sbjct: 4 MIEPNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVND 63
Query: 647 LNVRNMCHGEVVQVLKDCQRNLEANIIVQR--SRLQHKKTSPPFRSKTPTEMYTRP 700
+ ++ + ++VL+ +I++ H +T+ T T+P
Sbjct: 64 RPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQP 119
Score = 34.1 bits (78), Expect = 0.069
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 3/92 (3%)
Query: 15 GTHWQDKET-PVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIIL 73
G+H + V L G L F V ++++ + ++ IIL
Sbjct: 1 GSHMIEPNVISVRLFKRKVGGLGFLVKERVSKPPV-IISDLIRGGAAEQSGLIQAGDIIL 59
Query: 74 EIQGQKVAGYTRRDTIAWLNHCCRSGKTLTLR 105
+ + + + + L S + L
Sbjct: 60 AVNDRPLVDLSYDSALEVLRG-IASETHVVLI 90
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 94.9 bits (236), Expect = 3e-23
Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 1040 RGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEA 1099
R G GF ++ + + + G A G ++ GD I+ +N ++++ A
Sbjct: 10 RKVGGLGFLVKERVS--KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSA 67
Query: 1100 IEIIRNGDSTVRLLIKR 1116
+E++R S +++
Sbjct: 68 LEVLRGIASETHVVLIL 84
Score = 92.5 bits (230), Expect = 2e-22
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 819 DVMVITLLRQEN-GFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSV 877
+V+ + L +++ G GF + V I ++ GGAA+ G + GD I++V++ +
Sbjct: 1 NVISVRLFKRKVGGLGFLVKER-VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPL 59
Query: 878 LNSSHHHVVELMGKASVYGRVTLGIRR--KVMPPAETTSMMLGYPYDVTITR 927
++ S+ +E++ + V L +R ETT G P + +T+
Sbjct: 60 VDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQ 111
Score = 86.8 bits (215), Expect = 2e-20
Identities = 19/80 (23%), Positives = 39/80 (48%)
Query: 921 YDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSL 980
V + +R+ G GF++ ++K I +I A++SG + GD ILAVN ++ L
Sbjct: 3 ISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 62
Query: 981 HHGEIVNLIKDSGYCVTLTI 1000
+ + +++ + +
Sbjct: 63 SYDSALEVLRGIASETHVVL 82
Score = 76.0 bits (187), Expect = 1e-16
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 443 KSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
+ + GLGF + I ++ G A G +Q GD+++ VND+ ++ ++
Sbjct: 10 RKVGGLGFLVKERVSKPPVI--ISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSA 67
Query: 503 VSVFQSISPGETVQLEV--CRGYPLPFDPNDPNTEVVTTVAVNAP 545
+ V + I+ V L + G+ + T+ V P
Sbjct: 68 LEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQP 112
Score = 61.3 bits (149), Expect = 1e-11
Identities = 17/110 (15%), Positives = 44/110 (40%), Gaps = 8/110 (7%)
Query: 599 LTIPIVK-GAMGFGFTIA--DSSHGQKVKKILDRQ---RCKNLAEGDILIEINNLNVRNM 652
+++ + K G GF + S + ++ + + GDI++ +N+ + ++
Sbjct: 3 ISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 62
Query: 653 CHGEVVQVLKDCQRNLEANIIVQR--SRLQHKKTSPPFRSKTPTEMYTRP 700
+ ++VL+ +I++ H +T+ T T+P
Sbjct: 63 SYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQP 112
Score = 32.1 bits (73), Expect = 0.30
Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 2/80 (2%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGYT 84
V L G L F V ++++ + ++ IIL + + + +
Sbjct: 5 VRLFKRKVGGLGFLVKERVSKPPV-IISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLS 63
Query: 85 RRDTIAWLNHCCRSGKTLTL 104
+ L S + L
Sbjct: 64 YDSALEVL-RGIASETHVVL 82
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A
2ain_A
Length = 106
Score = 94.7 bits (236), Expect = 3e-23
Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 1028 EHDEQYHAIELSRGTRGFGFSIRGGRE--FQNMALFVLQIAENGPAALDGHLKVGDEIVE 1085
+ + + L + G G SI + + ++V + + G A +DG L GD+++
Sbjct: 7 HKEPEIITVTL-KKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLS 65
Query: 1086 INGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSV 1120
++G + ++ A E++ S V L + + G++
Sbjct: 66 VDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAI 100
Score = 90.9 bits (226), Expect = 6e-22
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 821 MVITLLRQENGFGFRIVGGTEEGSQ---VSIGHIVPGGAADLDGRLCTGDEIVSVDNLSV 877
++ L+++NG G IV G + + +V GGAAD+DGRL GD+++SVD S+
Sbjct: 12 IITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSL 71
Query: 878 LNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAE 911
+ S ELM + S VTL + ++ E
Sbjct: 72 VGLSQERAAELMTRTS--SVVTLEVAKQGAIRRE 103
Score = 84.7 bits (210), Expect = 8e-20
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 435 ERIHSSLVKSLRGLGFTIVGGDDSKEEFLQI--KSVVPNGPAALEGHLQTGDVLVYVNDK 492
I + +K G+G +IV + ++ L I KSVV G A ++G L GD L+ V+ +
Sbjct: 10 PEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 69
Query: 493 CVLGYTHHDMVSVFQSISPGETVQLEVCR 521
++G + + V LEV +
Sbjct: 70 SLVGLSQERAAELMTRT--SSVVTLEVAK 96
Score = 73.9 bits (182), Expect = 6e-16
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 923 VTITRRENEGFGFVII----SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIM 978
+T+T ++ G G I+ + +K G + +++ AD G L GD +L+V+ ++
Sbjct: 13 ITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLV 72
Query: 979 SLHHGEIVNLIKDSGYCVTLTIG 1001
L L+ + VTL +
Sbjct: 73 GLSQERAAELMTRTSSVVTLEVA 95
Score = 52.0 bits (125), Expect = 2e-08
Identities = 16/108 (14%), Positives = 39/108 (36%), Gaps = 15/108 (13%)
Query: 585 PSSTDLILESDSEYLTIPIVKGAMGFGFTIA---DSSHGQK---VKKILDR---QRCKNL 635
P +D + E +T+ + K G G +I + + VK ++ L
Sbjct: 2 PLGSD---HKEPEIITVTLKKQN-GMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRL 57
Query: 636 AEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKK 683
A GD L+ ++ ++ + +++ + V + ++
Sbjct: 58 AAGDQLLSVDGRSLVGLSQERAAELMTRTSS--VVTLEVAKQGAIRRE 103
Score = 31.9 bits (73), Expect = 0.30
Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 15 GTHWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFA---YVTNINKEKVKGAEKYLEEKAI 71
G+ ++ E +T+T+ + S+ +G+ YV ++ K + L
Sbjct: 4 GSDHKEPEI-ITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQ 62
Query: 72 ILEIQGQKVAGYTRRDTIAWLNHCCRSGKTLTL 104
+L + G+ + G ++ + R+ +TL
Sbjct: 63 LLSVDGRSLVGLSQERAAELMT---RTSSVVTL 92
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 94.9 bits (236), Expect = 3e-23
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 1040 RGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEA 1099
G+RG G SI G Q +F+ + +A G L++GD+IVE+NG++ N+ H EA
Sbjct: 24 VGSRGLGCSISSGPI-QKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEA 81
Query: 1100 IEIIRNGDSTVRLLIKRGGSVVAPTDNA 1127
+ ++++ S ++ G + TD +
Sbjct: 82 VNVLKSSRSLTISIVAAAGRELFMTDRS 109
Score = 67.5 bits (165), Expect = 1e-13
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Query: 814 SVEYSDVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVD 873
+ E + V L G G I G + + I H+ PG + G L GD+IV V+
Sbjct: 11 NRENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVN 69
Query: 874 NLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETT 913
+ N H V ++ + +T+ I T
Sbjct: 70 GVDFSNLDHKEAVNVLKSS---RSLTISIVAAAGRELFMT 106
Score = 62.5 bits (152), Expect = 7e-12
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 923 VTITRRENEGFGFVIIS-SLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
V I+ + G G I S + K G I + S + G L +GD I+ VN VD +L
Sbjct: 19 VFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLD 77
Query: 982 HGEIVNLIKDSGYCVTLTI 1000
H E VN++K S +T++I
Sbjct: 78 HKEAVNVLKSSR-SLTISI 95
Score = 58.7 bits (142), Expect = 1e-10
Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 2/98 (2%)
Query: 435 ERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCV 494
E+ + RGLG +I G K I V P +A G L+ GD +V VN
Sbjct: 16 EKKVFISLVGSRGLGCSISSGPIQKPGIF-ISHVKPGSLSAEVG-LEIGDQIVEVNGVDF 73
Query: 495 LGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDP 532
H + V+V +S + D + P
Sbjct: 74 SNLDHKEAVNVLKSSRSLTISIVAAAGRELFMTDRSGP 111
Score = 45.2 bits (107), Expect = 8e-06
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 604 VKGAMGFGFTIA---DSSHGQKVKKILDRQ--RCKNLAEGDILIEINNLNVRNMCHGEVV 658
+ G+ G G +I+ G + + L GD ++E+N ++ N+ H E V
Sbjct: 23 LVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAV 82
Query: 659 QVLKDCQR 666
VLK +
Sbjct: 83 NVLKSSRS 90
Score = 36.7 bits (85), Expect = 0.007
Identities = 17/91 (18%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 21 KETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKY-LEEKAIILEIQGQK 79
KE V +++ L S+ G +++++ + + + LE I+E+ G
Sbjct: 15 KEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSL--SAEVGLEIGDQIVEVNGVD 72
Query: 80 VAGYTRRDTIAWLNHCCRSGKTLTLRTVSSA 110
+ ++ + L +S ++LT+ V++A
Sbjct: 73 FSNLDHKEAVNVL----KSSRSLTISIVAAA 99
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 94.0 bits (234), Expect = 4e-23
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Query: 1026 GGEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVE 1085
Q L + +GFS++ + +++ I G A G + D ++E
Sbjct: 2 SSGSSGQPRLCYLVKEGGSYGFSLKTVQG--KKGVYMTDITPQGVAMRAG-VLADDHLIE 58
Query: 1086 INGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAPTDNAAGIYS 1132
+NG N ++ +H E +E ++ S V L+ + + +G S
Sbjct: 59 VNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDKRHVEQKSGPSS 105
Score = 85.1 bits (211), Expect = 6e-20
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 913 TSMMLGYPYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAV 972
+S G P + +E +GF + + K G + I A R+G + DH++ V
Sbjct: 2 SSGSSGQPRLCYL-VKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAG-VLADDHLIEV 59
Query: 973 NHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
N ++ H E+V +K SG V +
Sbjct: 60 NGENVEDASHEEVVEKVKKSGSRVMFLL 87
Score = 72.1 bits (177), Expect = 2e-15
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSS 881
+ L+++ +GF + + + I P G A G + D ++ V+ +V ++S
Sbjct: 11 LCYLVKEGGSYGFSLKTVQGKKGVY-MTDITPQGVAMRAG-VLADDHLIEVNGENVEDAS 68
Query: 882 HHHVVELMGKASVYGRVTLGIRRKVMPPAET 912
H VVE + K+ RV + K
Sbjct: 69 HEEVVEKVKKSG--SRVMFLLVDKETDKRHV 97
Score = 63.2 bits (154), Expect = 3e-12
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
LVK GF++ K + + + P G A G + D L+ VN + V +H
Sbjct: 14 LVKEGGSYGFSLKTVQGKKGVY--MTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHE 70
Query: 501 DMVSVFQSISPGETVQLEVCR 521
++V + G V +
Sbjct: 71 EVVEKVK--KSGSRVMFLLVD 89
Score = 56.6 bits (137), Expect = 7e-10
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 8/100 (8%)
Query: 593 ESDSEYLTIPIVKGAMGFGFTIAD--SSHGQKVKKILDR---QRCKNLAEGDILIEINNL 647
S + +VK +GF++ G + I + R + D LIE+N
Sbjct: 4 GSSGQPRLCYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRA-GVLADDHLIEVNGE 62
Query: 648 NVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPP 687
NV + H EVV+ +K + ++ +
Sbjct: 63 NVEDASHEEVVEKVKKSGSRVM--FLLVDKETDKRHVEQK 100
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 93.6 bits (233), Expect = 5e-23
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 1030 DEQYHAIELSRG-TRGFGFSIRGGR------EFQNMALFVLQIAENGPAALDGHLKVGDE 1082
+Q + L +G + FGF I+ + M FV ++ E+ PA L G L GD
Sbjct: 2 SQQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDT 60
Query: 1083 IVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRG 1117
I +NG+N + + H E ++II+ + +RL G
Sbjct: 61 IASVNGLNVEGIRHREIVDIIKASGNVLRLETLYG 95
Score = 89.7 bits (223), Expect = 1e-21
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGST--------IGRIIEDSPADRSGELHLGDHILA 971
+T+ + +N+ FGF I + + R+ E SPA +G L GD I +
Sbjct: 5 RKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIAS 63
Query: 972 VNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
VN +++ + H EIV++IK SG + L
Sbjct: 64 VNGLNVEGIRHREIVDIIKASGNVLRLET 92
Score = 63.2 bits (154), Expect = 2e-12
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 822 VITLLRQEN-GFGFRIVGGTEEGSQVS-------IGHIVPGGAADLDGRLCTGDEIVSVD 873
V+TL + +N FGF I + + + A L G L GD I SV+
Sbjct: 7 VLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVN 65
Query: 874 NLSVLNSSHHHVVELMGKASVYGRVTLGIRR 904
L+V H +V+++ + + L
Sbjct: 66 GLNVEGIRHREIVDIIKASG--NVLRLETLY 94
Score = 59.3 bits (144), Expect = 6e-11
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 446 RGLGFTIVG-----GDDSKEEFLQ-IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTH 499
+ GF I ++ + E + + V + PA L G L GD + VN V G H
Sbjct: 16 QTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRH 74
Query: 500 HDMVSVFQSISPGETVQLEVCRG 522
++V + ++ G ++LE G
Sbjct: 75 REIVDIIKAS--GNVLRLETLYG 95
Score = 49.3 bits (118), Expect = 2e-07
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 15/89 (16%)
Query: 595 DSEYLTIPIVKG-AMGFGFTIA----------DSSHGQKVKKILDR---QRCKNLAEGDI 640
+ + + KG FGF I V ++ + Q L GD
Sbjct: 2 SQQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLA-GLTPGDT 60
Query: 641 LIEINNLNVRNMCHGEVVQVLKDCQRNLE 669
+ +N LNV + H E+V ++K L
Sbjct: 61 IASVNGLNVEGIRHREIVDIIKASGNVLR 89
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 93.6 bits (233), Expect = 6e-23
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
V I ++ + G+GF + + + G I I SPA+ +G L D ++AVN + +
Sbjct: 7 GRVVVI-KKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEA 64
Query: 980 LHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSAA 1018
L H +V +I+ G TL + + S + S+
Sbjct: 65 LDHDGVVEMIRKGGDQTTLLV-LDKEAESIYSLSGPSSG 102
Score = 89.0 bits (221), Expect = 2e-21
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+ + +G+ G+GF +R G E + I PA G LK D +V +NG + + +
Sbjct: 10 VVIKKGSNGYGFYLRAGPE--QKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALD 66
Query: 1096 HAEAIEIIRNGDSTVRLLI 1114
H +E+IR G LL+
Sbjct: 67 HDGVVEMIRKGGDQTTLLV 85
Score = 72.8 bits (179), Expect = 1e-15
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSS 881
V+ + + NG+GF + G E+ Q+ I I PG A+ G L D +V+V+ SV
Sbjct: 9 VVVIKKGSNGYGFYLRAGPEQKGQI-IKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALD 66
Query: 882 HHHVVELMGKASVYGRVTLGIRRKVMPPAETT 913
H VVE++ K + TL V+ +
Sbjct: 67 HDGVVEMIRKGG--DQTTL----LVLDKEAES 92
Score = 60.8 bits (148), Expect = 2e-11
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
+ K G GF + G + K + IK + P PA G L+ D++V VN K V H
Sbjct: 12 IKKGSNGYGFYLRAGPEQKGQI--IKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHD 68
Query: 501 DMVSVFQSISPGETVQLEVCR 521
+V + + G+ L V
Sbjct: 69 GVVEMIRKG--GDQTTLLVLD 87
Score = 60.1 bits (146), Expect = 4e-11
Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 600 TIPIVKGAMGFGFTI--ADSSHGQKVKKILDR---QRCKNLAEGDILIEINNLNVRNMCH 654
+ I KG+ G+GF + GQ +K I + L D+++ +N +V + H
Sbjct: 9 VVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDH 67
Query: 655 GEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPP 687
VV++++ ++ + + + + P
Sbjct: 68 DGVVEMIRKGGDQTTLLVLDKEAESIYSLSGPS 100
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 93.7 bits (233), Expect = 6e-23
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGST--------IGRIIEDSPADRSGELHLGDHILA 971
VT+ +++NE FGF I S + + I +I EDSPA +G L GD +
Sbjct: 16 RKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLAN 74
Query: 972 VNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
+N V + ++V+LI+ SG +T+
Sbjct: 75 INGVSTEGFTYKQVVDLIRSSGNLLTIET 103
Score = 83.3 bits (206), Expect = 2e-19
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 1032 QYHAIELSR-GTRGFGFSIRGGR------EFQNMALFVLQIAENGPAALDGHLKVGDEIV 1084
Q + + + FGF I+ R M + +I E+ PA G L+ GD +
Sbjct: 15 QRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLA 73
Query: 1085 EINGINTKNMTHAEAIEIIRNGDSTVRLLI 1114
ING++T+ T+ + +++IR+ + + +
Sbjct: 74 NINGVSTEGFTYKQVVDLIRSSGNLLTIET 103
Score = 64.0 bits (156), Expect = 1e-12
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 822 VITLLRQEN-GFGFRIVGGTEEGSQ-------VSIGHIVPGGAADLDGRLCTGDEIVSVD 873
++T+ +Q+N FGF I + I I A G L GD + +++
Sbjct: 18 LVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANIN 76
Query: 874 NLSVLNSSHHHVVELMGKASVYGRVTL 900
+S ++ VV+L+ + +T+
Sbjct: 77 GVSTEGFTYKQVVDLIRSSG--NLLTI 101
Score = 55.2 bits (133), Expect = 2e-09
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 447 GLGFTIVGG------DDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
GF I S E F I + + PA G LQ GDVL +N G+T+
Sbjct: 28 TFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYK 86
Query: 501 DMVSVFQSISPGETVQLEV 519
+V + +S G + +E
Sbjct: 87 QVVDLIRSS--GNLLTIET 103
Score = 44.8 bits (106), Expect = 1e-05
Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 15/98 (15%)
Query: 586 SSTDLILESDSEYLTIPIVK-GAMGFGFTI----------ADSSHGQKVKKILDR---QR 631
S+ L S S+ + + K FGF I S + KI +
Sbjct: 4 GSSGLSDFSWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHC 63
Query: 632 CKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLE 669
L GD+L IN ++ + +VV +++ L
Sbjct: 64 AG-LQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLT 100
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 93.3 bits (232), Expect = 1e-22
Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 1016 SAASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDG 1075
S +S E + + E+ +++ +G+ G SI G + ++V ++ A G
Sbjct: 3 SGSSGGERRKDRPYVEEPRHVKVQKGSEPLGISIVSGEK---GGIYVSKVTVGSIAHQAG 59
Query: 1076 HLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
L+ GD+++E NGIN ++ T +A II T+ +L +
Sbjct: 60 -LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQY 99
Score = 73.3 bits (180), Expect = 1e-15
Identities = 14/100 (14%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 819 DVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVL 878
+ + + + G IV G + G + + + G A G L GD+++ + +++
Sbjct: 19 EPRHVKVQKGSEPLGISIVSGEKGG--IYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLR 75
Query: 879 NSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSMMLG 918
+++ ++G+ +T+ + ++ G
Sbjct: 76 SATEQQARLIIGQQC--DTITILAQYNPHVHQLSSHSRSG 113
Score = 65.6 bits (160), Expect = 6e-13
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
P V + ++ +E G I+S K G + ++ S A ++G L GD +L N +++ S
Sbjct: 20 PRHVKV-QKGSEPLGISIVSG-EKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRS 76
Query: 980 LHHGEIVNLIKDSGYCVTLTI 1000
+ +I +T+
Sbjct: 77 ATEQQARLIIGQQCDTITILA 97
Score = 61.3 bits (149), Expect = 2e-11
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
+ K LG +IV G+ + + V A G L+ GD L+ N + T
Sbjct: 25 VQKGSEPLGISIVSGEKGG---IYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQ 80
Query: 501 DMVSVFQSISPGETVQLEV 519
+ +T+ +
Sbjct: 81 QARLIIG--QQCDTITILA 97
Score = 54.4 bits (131), Expect = 5e-09
Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 11/102 (10%)
Query: 597 EYLTIPIVKGAMGFGFTIA-DSSHGQKVKKIL-----DRQRCKNLAEGDILIEINNLNVR 650
E + + KG+ G +I G V K+ + L GD L+E N +N+R
Sbjct: 19 EPRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAG---LEYGDQLLEFNGINLR 75
Query: 651 NMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKT 692
+ + ++ + I+ Q + H+ +S +
Sbjct: 76 SATEQQARLIIGQQCDTIT--ILAQYNPHVHQLSSHSRSGPS 115
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 93.3 bits (232), Expect = 1e-22
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Query: 1036 IELSRGT-RGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNM 1094
+E+ + G S+ + + +I G L GD I+ I+G + ++
Sbjct: 19 VEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHC 78
Query: 1095 THAEAIEIIRNGDSTVRLLIKRGGSVVAPTDNAAG 1129
+ EA +++ + VRL I P ++G
Sbjct: 79 SLLEATKLLASISEKVRLEILPVPQSQRPLRPSSG 113
Score = 93.3 bits (232), Expect = 1e-22
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 920 PYDVTITRRENEGFGFVIISSL--NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDI 977
P V I + G + ++ NK+ TI RI S DRSG LH GDHIL+++ +
Sbjct: 16 PLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSM 75
Query: 978 MSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSAAS 1019
E L+ V L I P+ S +S
Sbjct: 76 EHCSLLEATKLLASISEKVRLEI-LPVPQSQRPLRPSSGPSS 116
Score = 84.0 bits (208), Expect = 2e-19
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 818 SDVMVITLLRQEN-GFGFRIVGGTEEGSQ-VSIGHIVPGGAADLDGRLCTGDEIVSVDNL 875
S +++ +++ G + + ++I I P D G L GD I+S+D
Sbjct: 14 SGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGT 73
Query: 876 SVLNSSHHHVVELMGKASVYGRVTLGIRR--KVMPPAETTS 914
S+ + S +L+ S +V L I + P +S
Sbjct: 74 SMEHCSLLEATKLLASIS--EKVRLEILPVPQSQRPLRPSS 112
Score = 69.8 bits (171), Expect = 2e-14
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
LG ++ + + I + P G L GD ++ ++ + + + +
Sbjct: 28 ALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLL 87
Query: 507 QSISPGETVQLEVCRGYPLP 526
S E V+LE+
Sbjct: 88 A--SISEKVRLEILPVPQSQ 105
Score = 55.9 bits (135), Expect = 1e-09
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 596 SEYLTIPIVKGA-MGFGFTIADSSHGQK----VKKILDR---QRCKNLAEGDILIEINNL 647
S L + IVK G ++ +S K + +I R L GD ++ I+
Sbjct: 14 SGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGT 73
Query: 648 NVRNMCHGEVVQVLKDCQRNLEANII-VQRSRLQHKKTSPP 687
++ + E ++L + I+ V +S+ + +S P
Sbjct: 74 SMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLRPSSGP 114
Score = 28.6 bits (64), Expect = 4.9
Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 4/95 (4%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFA-YVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGY 83
V + P +L S+ S + + I V L IL I G +
Sbjct: 19 VEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHC 78
Query: 84 TRRDTIAWLNHCCRSGKTLTLRTVSSAYVTTDLRQ 118
+ + L + + L + LR
Sbjct: 79 SLLEATKLLA---SISEKVRLEILPVPQSQRPLRP 110
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 93.7 bits (233), Expect = 1e-22
Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 4/119 (3%)
Query: 1005 SGDDASSTTSVSAASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQN--MALFV 1062
D T S R + G + GG+ ++ + F+
Sbjct: 10 HSDKHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFI 69
Query: 1063 LQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRN--GDSTVRLLIKRGGS 1119
++ + A GHL+ GDE++E NG + T E II + V L++ R G
Sbjct: 70 TKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGP 128
Score = 89.9 bits (223), Expect = 3e-21
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Query: 819 DVMVITLLRQE-NGFGFRIVGGTEEGSQ---VSIGHIVPGGAADLDGRLCTGDEIVSVDN 874
+ ++ R G ++VGG S I + G AD G L GDE++ +
Sbjct: 36 RLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNG 95
Query: 875 LSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPA 910
+ ++ V ++ ++ +V L + R
Sbjct: 96 RLLQGATFEEVYNIILESKPEPQVELVVSRSGPSSG 131
Score = 79.5 bits (196), Expect = 1e-17
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 434 GERIHSSLVKSLRGLGFTIVGGDDSK--EEFLQIKSVVPNGPAALEGHLQTGDVLVYVND 491
+ S S LG +VGG ++ I V A GHL+ GD ++ N
Sbjct: 36 RLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNG 95
Query: 492 KCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLP 526
+ + G T ++ ++ P V+L V R P
Sbjct: 96 RLLQGATFEEVYNIILESKPEPQVELVVSRSGPSS 130
Score = 67.9 bits (166), Expect = 1e-13
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 920 PYDVTITRRENEGFGFVII----SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHV 975
D ++ R G ++ + + + I ++ + S AD G L GD +L N
Sbjct: 37 LKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGR 96
Query: 976 DIMSLHHGEIVNLIKDSGYCVTLTI 1000
+ E+ N+I +S + +
Sbjct: 97 LLQGATFEEVYNIILESKPEPQVEL 121
Score = 52.1 bits (125), Expect = 4e-08
Identities = 15/100 (15%), Positives = 37/100 (37%), Gaps = 10/100 (10%)
Query: 590 LILESDSEYLTIPIVKGAMGFGFTIA---DSSHGQK---VKKILDR---QRCKNLAEGDI 640
++L + ++P G + + G+ + K+ +L GD
Sbjct: 31 ILLNKRLKDGSVP-RDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDE 89
Query: 641 LIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQ 680
++E N ++ EV ++ + + + ++V RS
Sbjct: 90 VLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGPS 129
Score = 32.1 bits (73), Expect = 0.34
Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 19 QDKETPVTLTVPPDGSLNFSVGGGSDSGE---FAYVTNINKEKVKGAEKYLEEKAIILEI 75
+ ++ L V GG + A++T + K + +L +LE
Sbjct: 34 NKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEW 93
Query: 76 QGQKVAGYTRRDTIAWLNHCCRSGK-TLTLR 105
G+ + G T + + + L +
Sbjct: 94 NGRLLQGATFEEVYNIILESKPEPQVELVVS 124
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 92.4 bits (230), Expect = 1e-22
Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
I+ + +GF I ++ L V+ + G A G L GD+I+++N ++++
Sbjct: 14 IDKDTLLQDYGFHISE-----SLPLTVVAVTAGGSA--HGKLFPGDQILQMNNEPAEDLS 66
Query: 1096 HAEAIEIIRNGDSTVRLLIKRGGS 1119
A++I+R + ++ + + R S
Sbjct: 67 WERAVDILREAEDSLSITVVRCTS 90
Score = 77.8 bits (192), Expect = 2e-17
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 918 GYPYDVTITR-RENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVD 976
G + V I + + +GF I SL T+ + A G+L GD IL +N+
Sbjct: 7 GVRHTVKIDKDTLLQDYGFHISESL---PLTVVAVTAGGSAH--GKLFPGDQILQMNNEP 61
Query: 977 IMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDAS 1010
L V++++++ +++T+ S +S
Sbjct: 62 AEDLSWERAVDILREAEDSLSITVVRCTSSGPSS 95
Score = 67.8 bits (166), Expect = 5e-14
Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 821 MVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNS 880
+ I +GF I +++ + GG+A G+L GD+I+ ++N +
Sbjct: 12 VKIDKDTLLQDYGFHISES----LPLTVVAVTAGGSAH--GKLFPGDQILQMNNEPAEDL 65
Query: 881 SHHHVVELMGKASVYGRVTLGIRRKVMPP 909
S V+++ +A +++ + R
Sbjct: 66 SWERAVDILREAE--DSLSITVVRCTSSG 92
Score = 62.0 bits (151), Expect = 7e-12
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 443 KSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
L+ GF I L + +V G A G L GD ++ +N++ +
Sbjct: 18 TLLQDYGFHISESLP-----LTVVAVTAGGSA--HGKLFPGDQILQMNNEPAEDLSWERA 70
Query: 503 VSVFQSISPGETVQLEVCRGYPLP 526
V + + +++ + V R
Sbjct: 71 VDILR--EAEDSLSITVVRCTSSG 92
Score = 55.1 bits (133), Expect = 2e-09
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 597 EYLTIPIVKGAMGFGFTIADSSHGQKVKKILDRQRC-KNLAEGDILIEINNLNVRNMCHG 655
+ I +GF I++S V + L GD ++++NN ++
Sbjct: 10 HTVKIDKDTLLQDYGFHISESL-PLTVVAVTAGGSAHGKLFPGDQILQMNNEPAEDLSWE 68
Query: 656 EVVQVLKDCQRNLEANIIVQRSRLQHKKT 684
V +L++ + +L I V R +
Sbjct: 69 RAVDILREAEDSLS--ITVVRCTSSGPSS 95
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 97.5 bits (242), Expect = 2e-22
Identities = 42/184 (22%), Positives = 73/184 (39%), Gaps = 6/184 (3%)
Query: 955 SPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTS 1014
A R+G L L + + +++L +D+ V+ G P + +
Sbjct: 4 RRAPRTGLLELRCGAGSGAGGE---RWQRVLLSLAEDAL-TVSPADGEPGPEPEPAQLNG 59
Query: 1015 VSAASHREYEEGGEHDEQYHAIELSRG-TRGFGFSIRGGREFQNMALFVLQIAENGPAAL 1073
+ + Q + + + G G SI+GGRE M + + +I + A
Sbjct: 60 AAEPGAAPPQLPEALLLQRRRVTVRKADAGGLGISIKGGRE-NKMPILISKIFKGLAADQ 118
Query: 1074 DGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAPTDNAAGIYSS 1133
L VGD I+ +NG + + TH EA++ ++ V L +K V N+AG S
Sbjct: 119 TEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSV 178
Query: 1134 DTSS 1137
S
Sbjct: 179 GWDS 182
Score = 83.3 bits (205), Expect = 1e-17
Identities = 37/219 (16%), Positives = 68/219 (31%), Gaps = 25/219 (11%)
Query: 778 KESTSFEHEQPLPSNDMRYIPPDNLGLPRVRPTNIKSVEYSDVMVITLLRQEN-GFGFRI 836
+++ + P + + P P + +T+ + + G G I
Sbjct: 36 EDALTVSPADGEPGPEPEPAQLNGAAEPGAAPPQLPEALLLQRRRVTVRKADAGGLGISI 95
Query: 837 VGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYG 896
GG E + I I G AAD L GD I+SV+ + +++H V+ + K
Sbjct: 96 KGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG--K 153
Query: 897 RVTLGIRRKVMPPAETTSMMLGY--------------------PYDVTITRRENEGFGFV 936
V L ++ + G P ++ ++
Sbjct: 154 EVVLEVKYMKEVSPYFKNSAGGTSVGWDSPPASPLQRQPSSPGPQPRNLSEAKHVSLKMA 213
Query: 937 IISSLNKAGSTIGRIIEDSPAD--RSGELHLGDHILAVN 973
+S R +E AD + L D A +
Sbjct: 214 YVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARS 252
Score = 73.2 bits (179), Expect = 3e-14
Identities = 39/187 (20%), Positives = 63/187 (33%), Gaps = 9/187 (4%)
Query: 901 GIRRKVMPPAETTSMMLGYPYDVTITRRENEGFGFVIISSL-NKAGSTIGRIIEDSPADR 959
G P + +L VT+ + + G G I NK I +I + AD+
Sbjct: 59 GAAEPGAAPPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQ 118
Query: 960 SGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI----GAPISGDDASSTTSV 1015
+ L +GD IL+VN D+ S H E V +K +G V L + +++ TSV
Sbjct: 119 TEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSV 178
Query: 1016 SAASHREYEEGGEHDE--QYHAIELSRGTRGFGFSIRGGREFQNMAL--FVLQIAENGPA 1071
S + + R ++ A +G
Sbjct: 179 GWDSPPASPLQRQPSSPGPQPRNLSEAKHVSLKMAYVSRRCTPTDPEPRYLEICAADGQD 238
Query: 1072 ALDGHLK 1078
A+ K
Sbjct: 239 AVFLRAK 245
Score = 65.1 bits (158), Expect = 1e-11
Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 2/126 (1%)
Query: 412 STSNRSNNDENYFFTLNPDELIGERIHSSLVKSL-RGLGFTIVGGDDSKEEFLQIKSVVP 470
+ P+ L+ +R ++ K+ GLG +I GG ++K L I +
Sbjct: 54 PAQLNGAAEPGAAPPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPIL-ISKIFK 112
Query: 471 NGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPN 530
A L GD ++ VN + + TH + V + ++++ + F +
Sbjct: 113 GLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNS 172
Query: 531 DPNTEV 536
T V
Sbjct: 173 AGGTSV 178
Score = 53.2 bits (127), Expect = 1e-07
Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 10/147 (6%)
Query: 582 LERPSSTDLILESDSEYLTIPIVKG-AMGFGFTIA---DSSHGQKVKKILDRQ---RCKN 634
+ L + + + K A G G +I ++ + KI + +
Sbjct: 62 EPGAAPPQLPEALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEA 121
Query: 635 LAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKTPT 694
L GD ++ +N ++ + H E VQ LK + + + + + K S T
Sbjct: 122 LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSA---GGTSV 178
Query: 695 EMYTRPKEIVARRPKTPLVDTRSRSKT 721
+ P + R+P +P R+ S+
Sbjct: 179 GWDSPPASPLQRQPSSPGPQPRNLSEA 205
Score = 37.8 bits (87), Expect = 0.014
Identities = 15/81 (18%), Positives = 29/81 (35%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGYT 84
VT+ G L S+ GG ++ ++ I K + L IL + G+ ++ T
Sbjct: 81 VTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT 140
Query: 85 RRDTIAWLNHCCRSGKTLTLR 105
+ + L +
Sbjct: 141 HDEAVQALKKTGKEVVLEVKY 161
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 91.6 bits (228), Expect = 2e-22
Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 1028 EHDEQYHAIELSRGT-RGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEI 1086
+ + ++L + + G S+ + + + +D L+ GD I +
Sbjct: 4 RNSLEKFNVDLMKKAGKELGLSLSPNEI----GCTIADLIQGQYPEIDSKLQRGDIITKF 59
Query: 1087 NGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
NG + + + + + + V + + R
Sbjct: 60 NGDALEGLPFQVSYALFKGANGKVSMEVTR 89
Score = 82.4 bits (204), Expect = 4e-19
Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 18/113 (15%)
Query: 803 GLPRVRPTNIKSVEYSDVMVITLLRQEN-GFGFRIVGGTEEGSQVSIGHIVPGGAADLDG 861
G+PR + + L+++ G + E G +I ++ G ++D
Sbjct: 1 GIPR---------NSLEKFNVDLMKKAGKELGLSLSPN-EIG--CTIADLIQGQYPEIDS 48
Query: 862 RLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTS 914
+L GD I + ++ L A+ G+V++ + R P S
Sbjct: 49 KLQRGDIITKFNGDALEGLPFQVSYALFKGAN--GKVSMEVTR---PKPAAAS 96
Score = 81.2 bits (201), Expect = 1e-18
Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 921 YDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSL 980
++V + ++ + G + N+ G TI +I+ + +L GD I N + L
Sbjct: 10 FNVDLMKKAGKELGLSLSP--NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGL 67
Query: 981 HHGEIVNLIKDSGYCVTLTIGAPISGDDA 1009
L K + V++ + P +
Sbjct: 68 PFQVSYALFKGANGKVSMEVTRPKPAAAS 96
Score = 73.1 bits (180), Expect = 9e-16
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 435 ERIHSSLVK-SLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKC 493
E+ + L+K + + LG ++ + I ++ ++ LQ GD++ N
Sbjct: 8 EKFNVDLMKKAGKELGLSLSPNEIG----CTIADLIQGQYPEIDSKLQRGDIITKFNGDA 63
Query: 494 VLGYTHHDMVSVFQSISPGETVQLEVCRGYP 524
+ G ++F+ V +EV R P
Sbjct: 64 LEGLPFQVSYALFKGA--NGKVSMEVTRPKP 92
Score = 61.6 bits (150), Expect = 8e-12
Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 591 ILESDSEYLTIPIVKGA-MGFGFTIADSSHGQKVKKILDRQ---RCKNLAEGDILIEINN 646
I + E + ++K A G +++ + G + ++ Q L GDI+ + N
Sbjct: 2 IPRNSLEKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNG 61
Query: 647 LNVRNMCHGEVVQVLKDCQRNLEANIIVQRSR 678
+ + + K + ++ V R +
Sbjct: 62 DALEGLPFQVSYALFKGANG--KVSMEVTRPK 91
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor
protein, SR-BI, signaling protein; 1.30A {Mus musculus}
PDB: 3r69_A*
Length = 95
Score = 91.6 bits (228), Expect = 2e-22
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
P V I ++ + G+GF + + + G I I SPA+ +G L D ++AVN + +
Sbjct: 6 PRVVVI-KKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEA 63
Query: 980 LHHGEIVNLIKDSGYCVTLTI 1000
L H +V +I+ G TL +
Sbjct: 64 LDHDGVVEMIRKGGDQTTLLV 84
Score = 91.2 bits (227), Expect = 3e-22
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 1031 EQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGIN 1090
Q + + +G+ G+GF +R G E + I PA G LK D +V +NG +
Sbjct: 4 HQPRVVVIKKGSNGYGFYLRAGPE--QKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKS 60
Query: 1091 TKNMTHAEAIEIIRNGDSTVRLLI 1114
+ + H +E+IR G LL+
Sbjct: 61 VEALDHDGVVEMIRKGGDQTTLLV 84
Score = 73.1 bits (180), Expect = 7e-16
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSS 881
V+ + + NG+GF + G E+ Q+ I I PG A+ G L D +V+V+ SV
Sbjct: 8 VVVIKKGSNGYGFYLRAGPEQKGQI-IKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALD 65
Query: 882 HHHVVELMGKASVYGRVTLGIRRK 905
H VVE++ K + TL + K
Sbjct: 66 HDGVVEMIRKGG--DQTTLLVLDK 87
Score = 63.8 bits (156), Expect = 1e-12
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
+ K G GF + G + K + IK + P PA G L+ D++V VN K V H
Sbjct: 11 IKKGSNGYGFYLRAGPEQKGQI--IKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHD 67
Query: 501 DMVSVFQSISPGETVQLEVCRG 522
+V + + G+ L V
Sbjct: 68 GVVEMIRKG--GDQTTLLVLDK 87
Score = 59.2 bits (144), Expect = 6e-11
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 594 SDSEYLTIPIVKGAMGFGFTI--ADSSHGQKVKKILDR---QRCKNLAEGDILIEINNLN 648
S + + I KG+ G+GF + GQ +K I + L D+++ +N +
Sbjct: 2 SPHQPRVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKS 60
Query: 649 VRNMCHGEVVQVLKDC 664
V + H VV++++
Sbjct: 61 VEALDHDGVVEMIRKG 76
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 91.7 bits (228), Expect = 3e-22
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 1036 IELSRGTRGFGFSIRGGREFQ------NMALFVLQIAENGPAALDGHLKVGDEIVEINGI 1089
I + + +GFS+R R + + V + + PA G L+ GD I ING
Sbjct: 6 IVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGE 64
Query: 1090 NTKNMTHAEAIEIIRNGDSTVRLLI 1114
+ + H + +E++ + + L
Sbjct: 65 SVLGLVHMDVVELLLKSGNKISLRT 89
Score = 79.0 bits (195), Expect = 6e-18
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 923 VTITRRENEGFGFVIISSLNKAGST--------IGRIIEDSPADRSGELHLGDHILAVNH 974
+ + +GF + + G + + + + SPA +G L GD I +N
Sbjct: 5 PIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHING 63
Query: 975 VDIMSLHHGEIVNLIKDSGYCVTLTI 1000
++ L H ++V L+ SG ++L
Sbjct: 64 ESVLGLVHMDVVELLLKSGNKISLRT 89
Score = 65.9 bits (161), Expect = 3e-13
Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 14/100 (14%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVS-------IGHIVPGGAADLDGRLCTGDEIVSVDN 874
I + +GF + + + G A G L GD I ++
Sbjct: 5 PIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHING 63
Query: 875 LSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTS 914
SVL H VVEL+ K+ +++L + T +
Sbjct: 64 ESVLGLVHMDVVELLLKSG--NKISL----RTTALENTET 97
Score = 59.0 bits (143), Expect = 7e-11
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 441 LVKSLRGLGFTIVG-----GDDSKEEFLQ-IKSVVPNGPAALEGHLQTGDVLVYVNDKCV 494
+ S + GF++ GD + SV PA G L+ GD++ ++N + V
Sbjct: 8 IHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESV 66
Query: 495 LGYTHHDMVSVFQSISPGETVQLEVCR 521
LG H D+V + G + L
Sbjct: 67 LGLVHMDVVELLL--KSGNKISLRTTA 91
Score = 50.1 bits (120), Expect = 9e-08
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 14/78 (17%)
Query: 600 TIPIVKGAMGFGFTI----------ADSSHGQKVKKILDR---QRCKNLAEGDILIEINN 646
I I +GF++ + V + D Q L GD++ IN
Sbjct: 5 PIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHING 63
Query: 647 LNVRNMCHGEVVQVLKDC 664
+V + H +VV++L
Sbjct: 64 ESVLGLVHMDVVELLLKS 81
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 91.3 bits (227), Expect = 3e-22
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 1036 IELSRGTRGFGFSIRGGREFQN-------MALFVLQIAENGPAALDGHLKVGDEIVEING 1088
+ + + GFSI GG + +FV ++ GPA L+ GD+I++ NG
Sbjct: 7 VRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQANG 63
Query: 1089 INTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+ N+ H +A+ +++ +TV L+I R
Sbjct: 64 YSFINIEHGQAVSLLKTFQNTVELIIVR 91
Score = 66.3 bits (162), Expect = 2e-13
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 923 VTITRRENEGFGFVIISSLNKAGST---------IGRIIEDSPADRSGELHLGDHILAVN 973
+ + ++ GF I + G+ + R+ + PA L GD I+ N
Sbjct: 5 IRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQAN 62
Query: 974 HVDIMSLHHGEIVNLIKDSGYCVTLTIGAPIS 1005
+++ HG+ V+L+K V L I +S
Sbjct: 63 GYSFINIEHGQAVSLLKTFQNTVELIIVREVS 94
Score = 65.5 bits (160), Expect = 3e-13
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 13/95 (13%)
Query: 821 MVITLLRQEN-GFGFRIVGGTEEGSQ--------VSIGHIVPGGAADLDGRLCTGDEIVS 871
M I + +++ GF I GG + + + P G A L GD+I+
Sbjct: 3 MEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQ 60
Query: 872 VDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKV 906
+ S +N H V L+ V L I R+V
Sbjct: 61 ANGYSFINIEHGQAVSLLKTFQ--NTVELIIVREV 93
Score = 65.1 bits (159), Expect = 4e-13
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 447 GLGFTIVGGDDSKEEFLQ-------IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTH 499
LGF+I GG + + + V P GPA LQ GD ++ N + H
Sbjct: 14 ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEH 71
Query: 500 HDMVSVFQSISPGETVQLEVCR 521
VS+ ++ TV+L + R
Sbjct: 72 GQAVSLLKTF--QNTVELIIVR 91
Score = 48.2 bits (115), Expect = 5e-07
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 596 SEYLTIPIVKGAMGFGFTIADSSHGQK-----------VKKILDRQRC-KNLAEGDILIE 643
S + + + K GF+I+ G+ V ++ K L GD +I+
Sbjct: 2 SMEIRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQ 60
Query: 644 INNLNVRNMCHGEVVQVLKDCQRNLEANIIVQR 676
N + N+ HG+ V +LK Q +I+ R
Sbjct: 61 ANGYSFINIEHGQAVSLLKTFQN--TVELIIVR 91
Score = 33.5 bits (77), Expect = 0.065
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 10/93 (10%)
Query: 25 VTLTVPPDGSLNFSVGGGSDSGEFA--------YVTNINKEKVKGAEKYLEEKAIILEIQ 76
+ + V D L FS+ GG +VT + E A K L+ I++
Sbjct: 5 IRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGP--ASKLLQPGDKIIQAN 62
Query: 77 GQKVAGYTRRDTIAWLNHCCRSGKTLTLRTVSS 109
G ++ L + + + +R VSS
Sbjct: 63 GYSFINIEHGQAVSLLKTFQNTVELIIVREVSS 95
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein,
transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Length = 91
Score = 90.8 bits (226), Expect = 3e-22
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
L++G G+GF + R F+ ++ + GPA L G L+ D I+E+NG+N +
Sbjct: 7 CRLAKGENGYGFHLNAIRG--LPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEP 63
Query: 1096 HAEAIEIIRNGDSTVRLLI 1114
+ + ++ I++ V LL+
Sbjct: 64 YEKVVDRIQSSGKNVTLLV 82
Score = 88.5 bits (220), Expect = 2e-21
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
P + + G+GF + + GS I + + PAD +G L D I+ VN V+++
Sbjct: 4 PKLCRL-AKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLD 61
Query: 980 LHHGEIVNLIKDSGYCVTLTIGAPISGDDA 1009
+ ++V+ I+ SG VTL + D
Sbjct: 62 EPYEKVVDRIQSSGKNVTLLV-CGKKAQDT 90
Score = 70.4 bits (173), Expect = 6e-15
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSS 881
+ L + ENG+GF + I + GG ADL G L D I+ V+ ++VL+
Sbjct: 6 LCRLAKGENGYGFHLNAIRGLPGSF-IKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEP 63
Query: 882 HHHVVELMGKASVYGRVTLGIRRKVMPPAE 911
+ VV+ + + VTL V
Sbjct: 64 YEKVVDRIQSSG--KNVTL----LVCGKKA 87
Score = 63.4 bits (155), Expect = 2e-12
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
L K G GF + F IK V GPA L G L+ DV++ VN VL +
Sbjct: 9 LAKGENGYGFHLNAIRGLPGSF--IKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYE 65
Query: 501 DMVSVFQSISPGETVQLEVC 520
+V QS G+ V L VC
Sbjct: 66 KVVDRIQSS--GKNVTLLVC 83
Score = 56.9 bits (138), Expect = 3e-10
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 600 TIPIVKGAMGFGFTIADS--SHGQKVKKILDR---QRCKNLAEGDILIEINNLNVRNMCH 654
+ KG G+GF + G +K++ L + D++IE+N +NV + +
Sbjct: 6 LCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPY 64
Query: 655 GEVVQVLKDC 664
+VV ++
Sbjct: 65 EKVVDRIQSS 74
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 91.5 bits (227), Expect = 6e-22
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+ +G G+GF++ + F+ + + PA G L+ D IVE+NG+ +
Sbjct: 13 CTMKKGPSGYGFNLHSDKS--KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69
Query: 1096 HAEAIEIIRNGDSTVRLLIKR 1116
H + + IR G +LL+
Sbjct: 70 HGDVVSAIRAGGDETKLLVVD 90
Score = 83.0 bits (205), Expect = 6e-19
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
P T+ ++ G+GF + S +K G I + DSPA+ SG L D I+ VN V +
Sbjct: 10 PRLCTM-KKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEG 67
Query: 980 LHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSAASHRE 1022
HG++V+ I+ G L + + + + + H
Sbjct: 68 KQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLN 110
Score = 69.9 bits (171), Expect = 3e-14
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSS 881
+ T+ + +G+GF + + Q I + P A+ G L D IV V+ + +
Sbjct: 12 LCTMKKGPSGYGFNLHSDKSKPGQF-IRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69
Query: 882 HHHVVELMGKASVYGRVTLGIRRK 905
H VV + L + +
Sbjct: 70 HGDVVSAIRAGG--DETKLLVVDR 91
Score = 63.7 bits (155), Expect = 3e-12
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 427 LNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVL 486
++P ++ R+ ++ K G GF + +F I+SV P+ PA G L+ D +
Sbjct: 2 IDPFTMLRPRL-CTMKKGPSGYGFNLHSDKSKPGQF--IRSVDPDSPAEASG-LRAQDRI 57
Query: 487 VYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
V VN C+ G H D+VS + + G+ +L V
Sbjct: 58 VEVNGVCMEGKQHGDVVSAIR--AGGDETKLLVVD 90
Score = 56.0 bits (135), Expect = 2e-09
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 600 TIPIVKGAMGFGFTIA--DSSHGQKVKKILDR---QRCKNLAEGDILIEINNLNVRNMCH 654
+ KG G+GF + S GQ ++ + + L D ++E+N + + H
Sbjct: 12 LCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQH 70
Query: 655 GEVVQVLKDC 664
G+VV ++
Sbjct: 71 GDVVSAIRAG 80
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 90.1 bits (224), Expect = 1e-21
Identities = 12/82 (14%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 1036 IELSRGT-RGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNM 1094
++L + + G S+ + + + + +D L+ GD I + NG + +
Sbjct: 6 VDLMKKAGKELGLSLSPNE----IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGL 61
Query: 1095 THAEAIEIIRNGDSTVRLLIKR 1116
+ + + V + + R
Sbjct: 62 PFQVCYALFKGANGKVSMEVTR 83
Score = 86.3 bits (214), Expect = 3e-20
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Query: 921 YDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSL 980
++V + ++ + G + N+ G TI +I+ + +L GD I N + L
Sbjct: 4 FNVDLMKKAGKELGLSLSP--NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGL 61
Query: 981 HHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTS 1014
L K + V++ + P G S +
Sbjct: 62 PFQVCYALFKGANGKVSMEVTRPKPGSGGSGSLV 95
Score = 84.4 bits (209), Expect = 1e-19
Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 819 DVMVITLLRQE-NGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSV 877
+ + L+++ G + +I ++ G ++D +L GD I + ++
Sbjct: 2 EKFNVDLMKKAGKELGLSLSPN---EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDAL 58
Query: 878 LNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTS 914
L A+ G+V++ + R P S
Sbjct: 59 EGLPFQVCYALFKGAN--GKVSMEVTR--PKPGSGGS 91
Score = 73.6 bits (181), Expect = 7e-16
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 435 ERIHSSLVK-SLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKC 493
E+ + L+K + + LG ++ + I ++ ++ LQ GD++ N
Sbjct: 2 EKFNVDLMKKAGKELGLSLSPNEIG----CTIADLIQGQYPEIDSKLQRGDIITKFNGDA 57
Query: 494 VLGYTHHDMVSVFQSISPGETVQLEVCRGYP 524
+ G ++F+ V +EV R P
Sbjct: 58 LEGLPFQVCYALFKGA--NGKVSMEVTRPKP 86
Score = 59.7 bits (145), Expect = 4e-11
Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 10/104 (9%)
Query: 597 EYLTIPIVKGA-MGFGFTIADSSHGQKVKKILDRQ---RCKNLAEGDILIEINNLNVRNM 652
E + ++K A G +++ + G + ++ Q L GDI+ + N + +
Sbjct: 2 EKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGL 61
Query: 653 CHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKTPTEM 696
+ K + ++ V R K S S P +
Sbjct: 62 PFQVCYALFKGANG--KVSMEVTR----PKPGSGGSGSLVPRLL 99
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 89.8 bits (223), Expect = 1e-21
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKA---GSTIGRIIEDSPADRSGELHLGDHILAVNHVD 976
+V + +R EG G ++ S + + I ++ PA+RSG L +GD + A+N
Sbjct: 10 CREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTS 69
Query: 977 IMSLHHGEIVNLIKDSGYCVTLTI 1000
++ L ++++ ++T+
Sbjct: 70 LVGLPLAACQAAVRETKSQTSVTL 93
Score = 85.2 bits (211), Expect = 5e-20
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 2/94 (2%)
Query: 1025 EGGEHDEQYHAIELSRGT-RGFGFSIR-GGREFQNMALFVLQIAENGPAALDGHLKVGDE 1082
G + + L + G G ++ G + + GPA G L +GD
Sbjct: 2 SSGSSGDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDR 61
Query: 1083 IVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+ ING + + A +R S + +
Sbjct: 62 LTAINGTSLVGLPLAACQAAVRETKSQTSVTLSI 95
Score = 76.7 bits (189), Expect = 5e-17
Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 819 DVMVITLLRQEN-GFGFRIVGG--TEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNL 875
+ + L ++ G G +V I +++ GG A+ G L GD + +++
Sbjct: 9 NCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGT 68
Query: 876 SVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPP 909
S++ + + + ++ + PP
Sbjct: 69 SLVGLPLAACQAAVRETK--SQTSVTLSIVHCPP 100
Score = 71.3 bits (175), Expect = 4e-15
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 447 GLGFTIV-GGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
GLG +V G S I +++ GPA G L GD L +N ++G +
Sbjct: 22 GLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAA 81
Query: 506 FQSISPGETVQLEVCRGYPL 525
+ +V L + P+
Sbjct: 82 VRETKSQTSVTLSIVHCPPV 101
Score = 50.1 bits (120), Expect = 1e-07
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 9/82 (10%)
Query: 593 ESDSEYLTIPIVKGA-MGFGFTIADSSHGQK-----VKKILDR---QRCKNLAEGDILIE 643
S + + K G G + +S G + +L +R L+ GD L
Sbjct: 5 SSGDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTA 64
Query: 644 INNLNVRNMCHGEVVQVLKDCQ 665
IN ++ + +++ +
Sbjct: 65 INGTSLVGLPLAACQAAVRETK 86
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 89.3 bits (222), Expect = 1e-21
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+ + + GFGF++ G R + V + G A G +K GD I+++NG N +
Sbjct: 12 VIIQKDQHGFGFTVSGDRI-----VLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSS 65
Query: 1096 HAEAIEIIRNGDSTVRLLIKRG 1117
H E +++I++G L+
Sbjct: 66 HLEVVKLIKSGAYVALTLLGSS 87
Score = 70.0 bits (172), Expect = 8e-15
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
V I +++ GFGF + + + A ++G + GD I+ VN + +
Sbjct: 9 QRCVII-QKDQHGFGFTVSGD---RIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTN 63
Query: 980 LHHGEIVNLIKDSGYCVTLTI 1000
H E+V LIK SG V LT+
Sbjct: 64 SSHLEVVKLIK-SGAYVALTL 83
Score = 67.3 bits (165), Expect = 7e-14
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSS 881
+ + + ++GFGF + G V + + PGGAA G + GD I+ V+ V NSS
Sbjct: 11 CVIIQKDQHGFGFTVSGD----RIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSS 65
Query: 882 HHHVVELMGKASVYGRVTLGIRRKVMPPA 910
H VV+L+ V L + P+
Sbjct: 66 HLEVVKLIKSG---AYVALTLLGSSSGPS 91
Score = 60.8 bits (148), Expect = 1e-11
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
+ K G GFT+ G + ++SV P G A G ++ GD ++ VN V +H
Sbjct: 14 IQKDQHGFGFTVSGDRI-----VLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHL 67
Query: 501 DMVSVFQSISPGETVQLEVCRGYPLP 526
++V + +S G V L + P
Sbjct: 68 EVVKLIKS---GAYVALTLLGSSSGP 90
Score = 52.7 bits (127), Expect = 1e-08
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 600 TIPIVKGAMGFGFTIADSSHGQKVKKILDR---QRCKNLAEGDILIEINNLNVRNMCHGE 656
+ I K GFGFT++ V+ + + + EGD +I++N V N H E
Sbjct: 11 CVIIQKDQHGFGFTVS-GDRIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLE 68
Query: 657 VVQVLKDCQR 666
VV+++K
Sbjct: 69 VVKLIKSGAY 78
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 89.4 bits (222), Expect = 2e-21
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 1027 GEHDEQYHAIELSRGT-RGFGFSIRGGREFQ-NMALFVLQIAENGPAALDGHLKVGDEIV 1084
G H + L+ G SI G + + +++ I + G A DG ++ GD ++
Sbjct: 1 GSHMNIIT-VTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLL 59
Query: 1085 EINGINTKNMTHAEAIEIIRN---GDSTVRLLIKRGGS 1119
++N +N +NM++ +A+ ++R+ + L + + G
Sbjct: 60 QVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGG 97
Score = 84.0 bits (208), Expect = 2e-19
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 819 DVMVITLLRQE-NGFGFRIVGGTEEGSQVSI--GHIVPGGAADLDGRLCTGDEIVSVDNL 875
+++ +TL ++ N G IVG + E I G I+ GGA DGR+ GD ++ V+++
Sbjct: 5 NIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDM 64
Query: 876 SVLNSSHHHVVELMGKASVY-GRVTLGIRRKVMPPAETTSM 915
+ N S+ V ++ G + L + + +
Sbjct: 65 NFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGGGSGNEVWI 105
Score = 77.5 bits (191), Expect = 3e-17
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 446 RGLGFTIVGGDDSKEEF-LQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVS 504
LG +IVG + + + + I S++ G A +G ++ GD+L+ VND ++ D V
Sbjct: 17 NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVR 76
Query: 505 VFQSI-SPGETVQLEVCR 521
V + I + L V +
Sbjct: 77 VLRDIVHKPGPIVLTVAK 94
Score = 63.6 bits (155), Expect = 3e-12
Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 921 YDVTITRRENEGFGFVII---SSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDI 977
VT+ + G I+ + G IG I++ G + GD +L VN ++
Sbjct: 7 ITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNF 66
Query: 978 MSLHHGEIVNLIKDSGY---CVTLTIGAPISGDDASSTTS 1014
++ + + V +++D + + LT+ G
Sbjct: 67 ENMSNDDAVRVLRDIVHKPGPIVLTVAKSGGGSGNEVWID 106
Score = 50.9 bits (122), Expect = 7e-08
Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 594 SDSEYLTIPIVKGAM-GFGFTIADSSHGQK-----VKKILDR---QRCKNLAEGDILIEI 644
S +T+ + G +I S+ + + I+ + GD+L+++
Sbjct: 2 SHMNIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQV 61
Query: 645 NNLNVRNMCHGEVVQVLKDC-QRNLEANIIVQRSR 678
N++N NM + + V+VL+D + + V +S
Sbjct: 62 NDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSG 96
Score = 36.6 bits (85), Expect = 0.007
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 23 TPVTLTVPPDGSLNFSVGGGSDSGEFA--YVTNINKEKVKGAEKYLEEKAIILEIQGQKV 80
VTL + L S+ G S+ Y+ +I K A+ +E ++L++
Sbjct: 7 ITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNF 66
Query: 81 AGYTRRDTIAWLNHCCRSGKTLTL 104
+ D + L + L
Sbjct: 67 ENMSNDDAVRVLRDIVHKPGPIVL 90
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 87.4 bits (217), Expect = 6e-21
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 1031 EQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGIN 1090
+ I L + G +I+ + A+ V +I G A G + VGDE+ E+NGI
Sbjct: 3 DSVKIIRLVKNREPLGATIKKDEQ--TGAIIVARIMRGGAADRSGLIHVGDELREVNGIP 60
Query: 1091 TKNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAP 1123
++ E I+I+ + I G P
Sbjct: 61 VEDKRPEEIIQILAQSQGAITFKIIPGSKEETP 93
Score = 84.3 bits (209), Expect = 8e-20
Identities = 20/74 (27%), Positives = 32/74 (43%)
Query: 927 RRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIV 986
+ E G I + RI+ ADRSG +H+GD + VN + + EI+
Sbjct: 11 VKNREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEII 70
Query: 987 NLIKDSGYCVTLTI 1000
++ S +T I
Sbjct: 71 QILAQSQGAITFKI 84
Score = 80.5 bits (199), Expect = 2e-18
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 820 VMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLN 879
V +I L++ G I E+ + + I+ GGAAD G + GDE+ V+ + V +
Sbjct: 5 VKIIRLVKNREPLGATIKKD-EQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVED 63
Query: 880 SSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTS 914
+++++ ++ G +T K++P ++ +
Sbjct: 64 KRPEEIIQILAQSQ--GAITF----KIIPGSKEET 92
Score = 63.5 bits (155), Expect = 1e-12
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
LVK+ LG TI + + + ++ G A G + GD L VN V
Sbjct: 10 LVKNREPLGATIKKDEQTGAII--VARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPE 67
Query: 501 DMVSVFQSISPGETVQLEVCRGY 523
+++ + + ++ G
Sbjct: 68 EIIQILAQS--QGAITFKIIPGS 88
Score = 57.4 bits (139), Expect = 3e-10
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 17/99 (17%)
Query: 600 TIPIVKGAMGFGFTIA--DSSHGQKVKKILDRQ---RCKNLAEGDILIEINNLNVRNMCH 654
I +VK G TI + + V +I+ R + GD L E+N + V +
Sbjct: 7 IIRLVKNREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRP 66
Query: 655 GEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKTP 693
E++Q+L Q + II P + +TP
Sbjct: 67 EEIIQILAQSQGAITFKII------------PGSKEETP 93
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 85.0 bits (211), Expect = 3e-20
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
P +T+ + GF+ I I++DS A R+G L +I +N +++
Sbjct: 5 PRTITMHKDSTGHVGFIFK------NGKITSIVKDSSAARNG-LLTEHNICEINGQNVIG 57
Query: 980 LHHGEIVNLIKDSGYCVTLTI 1000
L +I +++ SG VT+TI
Sbjct: 58 LKDSQIADILSTSGTVVTITI 78
Score = 78.9 bits (195), Expect = 4e-18
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 1034 HAIELSRGTRG-FGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTK 1092
I + + + G GF + G+ + I ++ AA +G L I EING N
Sbjct: 6 RTITMHKDSTGHVGFIFKNGK--------ITSIVKDSSAARNG-LLTEHNICEINGQNVI 56
Query: 1093 NMTHAEAIEIIRNGDSTVRLLI 1114
+ ++ +I+ + V + I
Sbjct: 57 GLKDSQIADILSTSGTVVTITI 78
Score = 65.8 bits (161), Expect = 2e-13
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
Query: 822 VITLLRQENG-FGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNS 880
IT+ + G GF G I IV +A +G L T I ++ +V+
Sbjct: 7 TITMHKDSTGHVGFIFKNGK-------ITSIVKDSSAARNG-LLTEHNICEINGQNVIGL 58
Query: 881 SHHHVVELMGKASVYGRVTLGIRRKVMPP 909
+ +++ + VT+ +MP
Sbjct: 59 KDSQIADILSTSG--TVVTI----TIMPA 81
Score = 53.5 bits (129), Expect = 4e-09
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
+GF G +I S+V + AA G L T + +N + V+G + +
Sbjct: 17 HVGFIFKNG--------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADIL 67
Query: 507 QSISPGETVQLEV 519
+ G V + +
Sbjct: 68 S--TSGTVVTITI 78
Score = 46.9 bits (112), Expect = 8e-07
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 13/80 (16%)
Query: 600 TIPIVKGAMG-FGFTIADSSHGQKVKKIL-----DRQRCKNLAEGDILIEINNLNVRNMC 653
TI + K + G GF K+ I+ R L + EIN NV +
Sbjct: 7 TITMHKDSTGHVGFIF----KNGKITSIVKDSSAARNG---LLTEHNICEINGQNVIGLK 59
Query: 654 HGEVVQVLKDCQRNLEANII 673
++ +L + I+
Sbjct: 60 DSQIADILSTSGTVVTITIM 79
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 89.4 bits (221), Expect = 3e-20
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+ +G G+GF++ + F+ + + PA G L+ D IVE+NG+ +
Sbjct: 13 CTMKKGPSGYGFNLHSDKSK--PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69
Query: 1096 HAEAIEIIRNGDSTVRLLI 1114
H + + IR G +LL+
Sbjct: 70 HGDVVSAIRAGGDETKLLV 88
Score = 84.1 bits (207), Expect = 3e-18
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
P T+ ++ G+GF + S +K G I + DSPA+ SG L D I+ VN V +
Sbjct: 10 PRLCTM-KKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEG 67
Query: 980 LHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSAASHRE 1022
HG++V+ I+ G L + + + + + H
Sbjct: 68 KQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLN 110
Score = 69.8 bits (170), Expect = 2e-13
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSS 881
+ T+ + +G+GF + + Q I + P A+ G L D IV V+ + +
Sbjct: 12 LCTMKKGPSGYGFNLHSDKSKPGQF-IRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69
Query: 882 HHHVVELMGKASVYGRVTLGIRRK 905
H VV + L + +
Sbjct: 70 HGDVVSAIRAGG--DETKLLVVDR 91
Score = 62.1 bits (150), Expect = 8e-11
Identities = 43/205 (20%), Positives = 76/205 (37%), Gaps = 13/205 (6%)
Query: 427 LNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVL 486
++P ++ R+ ++ K G GF + +F I+SV P+ PA G L+ D +
Sbjct: 2 IDPFTMLRPRL-CTMKKGPSGYGFNLHSDKSKPGQF--IRSVDPDSPAEASG-LRAQDRI 57
Query: 487 VYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCR--GYPLPFDPNDPNTEVVTTVAVNA 544
V VN C+ G H D+VS + + G+ +L V ++ +
Sbjct: 58 VEVNGVCMEGKQHGDVVSAIR--AGGDETKLLVVDRETDEFFKKCRVIPSQEHLNGPLPV 115
Query: 545 PDLDNGSDRHLYMSANDFTDQSVKSMPDLYTSEKMVKLERPSSTDLILESDS-EYLTIPI 603
P NG + P L S E +S D + DS +
Sbjct: 116 P-FTNGEIQKENSREALAEAALESPRPALVRSASSDTSEELNSQDSPPKQDSTAPSSTSS 174
Query: 604 VKGAMGFGFTIA---DSSHGQKVKK 625
+ F ++A + +H ++ K
Sbjct: 175 SDPILDFNISLAMAKERAHQKRSSK 199
Score = 58.6 bits (141), Expect = 1e-09
Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 9/132 (6%)
Query: 600 TIPIVKGAMGFGFTI--ADSSHGQKVKKILD---RQRCKNLAEGDILIEINNLNVRNMCH 654
+ KG G+GF + S GQ ++ + + L D ++E+N + + H
Sbjct: 12 LCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQH 70
Query: 655 GEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKTPTEMYTRP---KEIVARRPKTP 711
G+VV ++ + ++ + + KK + P EI +
Sbjct: 71 GDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSREA 130
Query: 712 LVDTRSRSKTPT 723
L + S P
Sbjct: 131 LAEAALESPRPA 142
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ,
guanine-nucleotide releasing factor, phosphoprotein, SH3
domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 86.6 bits (214), Expect = 4e-20
Identities = 23/107 (21%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 907 MPPAETTSMMLGYPYDVTITRRENEGFGFVIISSLNKAGST-------------IGRIIE 953
+ P + S + V + ++++EGFGFV+ + + + + E
Sbjct: 15 LVPRGSGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDE 74
Query: 954 DSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
A R+G L +GD ++ VN +++ + H ++VN+I+ G + + +
Sbjct: 75 GGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 120
Score = 83.5 bits (206), Expect = 5e-19
Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 12/131 (9%)
Query: 1006 GDDASSTTSVSAASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQ--------- 1056
G ++ + + + GFGF +RG +
Sbjct: 2 GSSHHHHHHSQDPLVPRGSGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTP 61
Query: 1057 --NMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLI 1114
++ + E G A G L++GD ++E+NG N + H + + +IR G +T+ + +
Sbjct: 62 AFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 120
Query: 1115 KRGGSVVAPTD 1125
+
Sbjct: 121 VMVTRHPDMDE 131
Score = 59.6 bits (144), Expect = 1e-10
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 15/100 (15%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVS------------IGHIVPGGAADLDGRLCTGDEI 869
V+ + GFGF + G + + + GG A G L GD +
Sbjct: 31 VLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFL 89
Query: 870 VSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPP 909
+ V+ +V+ H VV ++ + + + + P
Sbjct: 90 IEVNGQNVVKVGHRQVVNMIRQGG--NTLMVKVVMVTRHP 127
Score = 59.2 bits (143), Expect = 2e-10
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 15/115 (13%)
Query: 428 NPDELIGERIHSSLVKSLRGLGFTIVGG-----------DDSKEEFLQIKSVVPNGPAAL 476
D +I E+ K G GF + G + ++SV G A
Sbjct: 21 GSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWR 80
Query: 477 EGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPND 531
G L+ GD L+ VN + V+ H +V++ + G T+ ++V P D ++
Sbjct: 81 AG-LRMGDFLIEVNGQNVVKVGHRQVVNMIR--QGGNTLMVKVVMVTRHP-DMDE 131
Score = 46.9 bits (111), Expect = 3e-06
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 20/118 (16%)
Query: 569 SMPDLYTSEKMVKLERPSSTDLILESDSEYLTIPIVKGAMGFGFTI-------------- 614
S + + + R S +D I++ E + K + GFGF +
Sbjct: 3 SSHHHHHHSQDPLVPRGSGSDYIIK---EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTP 59
Query: 615 -ADSSHGQKVKKILDRQ--RCKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLE 669
Q ++ + + L GD LIE+N NV + H +VV +++ L
Sbjct: 60 TPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLM 117
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding
domain, signaling protein; HET: GNP; 2.10A {Mus musculus}
SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Length = 128
Score = 86.1 bits (213), Expect = 6e-20
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 1036 IELSRGTRGFGFSIRGGREFQ--------NMALFVLQIAENGPAALDGHLKVGDEIVEIN 1087
+ + GF IR G + +F+ ++ G A G L V DE++E+N
Sbjct: 35 LCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVN 94
Query: 1088 GINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
GI + + +++ + + ++
Sbjct: 95 GIEVSGKSLDQVTDMMIANSRNLIITVRP 123
Score = 79.1 bits (195), Expect = 1e-17
Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 20/126 (15%)
Query: 788 PLPSNDMRYIPPDNLGLPRVRPTNIKSVEYSDVMVITLLRQENGFGFRIVGGT------- 840
+P + ++ + P + V + E GF I G+
Sbjct: 9 SMPQDFRPVSSIIDVDIL---PETHRRVR------LCKYGTEKPLGFYIRDGSSVRVTPH 59
Query: 841 --EEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRV 898
E+ + I +VPGG A G L DE++ V+ + V S V ++M S +
Sbjct: 60 GLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANS--RNL 117
Query: 899 TLGIRR 904
+ +R
Sbjct: 118 IITVRP 123
Score = 73.0 bits (179), Expect = 2e-15
Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 11/104 (10%)
Query: 908 PPAETTSMMLGYPYDVTITRRE-NEGFGFVII----------SSLNKAGSTIGRIIEDSP 956
++ V + + + GF I G I R++
Sbjct: 18 SSIIDVDILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGL 77
Query: 957 ADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
A +G L + D +L VN +++ ++ +++ + + +T+
Sbjct: 78 AQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITV 121
Score = 64.1 bits (156), Expect = 2e-12
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 435 ERIHSSLVKSLRGLGFTIVGGDDSKEEFLQ--------IKSVVPNGPAALEGHLQTGDVL 486
R+ + + LGF I G + I +VP G A G L D +
Sbjct: 31 RRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEV 90
Query: 487 VYVNDKCVLGYTHHDMVSVFQSISPGETVQLEV 519
+ VN V G + + + + + + V
Sbjct: 91 LEVNGIEVSGKSLDQVTDMMI--ANSRNLIITV 121
Score = 47.9 bits (114), Expect = 1e-06
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 590 LILESDSEYLTIPIVKGA-MGFGFTIADSSHGQKVKKILDR---QRCKNLAEGDILIEIN 645
L + L I G+ + + G + +++ Q LA D ++E+N
Sbjct: 35 LCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVN 94
Query: 646 NLNVRNMCHGEVVQVLKDCQRNL 668
+ V +V ++ RNL
Sbjct: 95 GIEVSGKSLDQVTDMMIANSRNL 117
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus}
SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Length = 109
Score = 84.9 bits (210), Expect = 7e-20
Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 14/94 (14%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGST-------------IGRIIEDSPADRSGELHLG 966
V + ++++EGFGFV+ + + + + E A R+G L +G
Sbjct: 8 EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMG 66
Query: 967 DHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
D ++ VN +++ + H ++VN+I+ G + + +
Sbjct: 67 DFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 100
Score = 84.5 bits (209), Expect = 1e-19
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 1040 RGTRGFGFSIRGGR-----------EFQNMALFVLQIAENGPAALDGHLKVGDEIVEING 1088
+ + GFGF +RG + ++ + E G A G L++GD ++E+NG
Sbjct: 16 KDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNG 74
Query: 1089 INTKNMTHAEAIEIIRNGDSTVRLLIKRGG 1118
N + H + + +IR G +T+ + +
Sbjct: 75 QNVVKVGHRQVVNMIRQGGNTLMVKVVMVT 104
Score = 60.2 bits (146), Expect = 4e-11
Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 16/100 (16%)
Query: 823 ITLLRQEN-GFGFRIVGGTEEGSQVS------------IGHIVPGGAADLDGRLCTGDEI 869
+ L ++++ GFGF + G + + + GG A G L GD +
Sbjct: 11 VLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFL 69
Query: 870 VSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPP 909
+ V+ +V+ H VV ++ + + + + P
Sbjct: 70 IEVNGQNVVKVGHRQVVNMIRQGG--NTLMVKVVMVTRHP 107
Score = 59.1 bits (143), Expect = 1e-10
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 430 DELIGERIHSSLVKSLRGLGFTIVGG-----------DDSKEEFLQIKSVVPNGPAALEG 478
D +I E+ K G GF + G + ++SV G A G
Sbjct: 3 DYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG 62
Query: 479 HLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLP 526
L+ GD L+ VN + V+ H +V++ + G T+ ++V P
Sbjct: 63 -LRMGDFLIEVNGQNVVKVGHRQVVNMIR--QGGNTLMVKVVMVTRHP 107
Score = 45.2 bits (107), Expect = 6e-06
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 25/94 (26%)
Query: 597 EYLTIPIVKGAMGFGFTIADSSHGQKVKKILDRQRCKN---------------------L 635
E + K + GFGF + G K + ++ L
Sbjct: 8 EKTVLLQKKDSEGFGFVL----RGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGL 63
Query: 636 AEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLE 669
GD LIE+N NV + H +VV +++ L
Sbjct: 64 RMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLM 97
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 84.8 bits (210), Expect = 9e-20
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 1009 ASSTTSVSAASHREYE-EGGEHDEQYHAIELSRGT-RGFGFSIRGGREFQNMALFVLQIA 1066
SS +S R YE G E + + + G ++R + ++ + +I
Sbjct: 1 GSSGSSGPITDERVYESIGHYGGETVKIVRIEKARDIPLGATVRNEMD----SVIISRIV 56
Query: 1067 ENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRG 1117
+ G A G L GDE++EINGI + E +++ + T+ ++
Sbjct: 57 KGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPS 107
Score = 81.3 bits (201), Expect = 2e-18
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 923 VTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHH 982
V I + + G + + I RI++ A++SG LH GD +L +N ++I
Sbjct: 29 VRIEKARDIPLGATVRN--EMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDV 86
Query: 983 GEIVNLIKDSGYCVTLTI 1000
E+ +L+ D +T +
Sbjct: 87 NEVFDLLSDMHGTLTFVL 104
Score = 75.2 bits (185), Expect = 3e-16
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 819 DVMVITLLRQEN-GFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSV 877
V ++ + + + G + + V I IV GGAA+ G L GDE++ ++ + +
Sbjct: 25 TVKIVRIEKARDIPLGATVRNEMDS---VIISRIVKGGAAEKSGLLHEGDEVLEINGIEI 81
Query: 878 LNSSHHHVVELMGKASVYGRVTLGIRRKVMPP 909
+ V +L+ G +T + P
Sbjct: 82 RGKDVNEVFDLLSDMH--GTLTFVLIPSSGPS 111
Score = 57.5 bits (139), Expect = 4e-10
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
LG T+ DS + I +V G A G L GD ++ +N + G +++ +
Sbjct: 38 PLGATVRNEMDS----VIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLL 93
Query: 507 QSISPGETVQLEVCRGY 523
+ T+ +
Sbjct: 94 SDM--HGTLTFVLIPSS 108
Score = 54.8 bits (132), Expect = 3e-09
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 585 PSSTDLILESDSEYL-----TIPIVKGA-MGFGFTIADSSHGQKVKKILDRQ---RCKNL 635
P + + + ES Y + I K + G T+ + + +I+ + L
Sbjct: 8 PITDERVYESIGHYGGETVKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLL 67
Query: 636 AEGDILIEINNLNVRNMCHGEVVQVLKDCQRNL 668
EGD ++EIN + +R EV +L D L
Sbjct: 68 HEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTL 100
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 85.3 bits (211), Expect = 1e-19
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 1016 SAASHREYEEGGEHDEQYHAIELSRG--TRGFGFSIRGGR-EFQNMALFVLQIAENGPAA 1072
S +S ++E + + ++L R G ++ + ++ +++ +I N AA
Sbjct: 3 SGSSGDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAA 62
Query: 1073 LDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
DG ++ GD I++INGI +N A A+ + L+ +
Sbjct: 63 KDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIARP 106
Score = 72.2 bits (177), Expect = 3e-15
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 819 DVMVITLLRQE--NGFGFRIVGGT--EEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDN 874
++ + L R + G + T E+ + I I P A DGR+ GD I+ ++
Sbjct: 19 ELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQING 78
Query: 875 LSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAE 911
+ V N + + +L I R + E
Sbjct: 79 IEVQNREEAVALLTSEEN---KNFSLLIARPELQLDE 112
Score = 68.3 bits (167), Expect = 7e-14
Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 7/124 (5%)
Query: 412 STSNRSNNDENYFFTLNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEF-LQIKSVVP 470
S+ + + + ++ +EL E + + S LG T+ D +++ + I + P
Sbjct: 2 SSGSSGDIHQE----MDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDP 57
Query: 471 NGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPN 530
N AA +G ++ GD ++ +N V V++ S L L
Sbjct: 58 NSIAAKDGRIREGDRIIQINGIEVQNREEA--VALLTSEENKNFSLLIARPELQLDEGWM 115
Query: 531 DPNT 534
D ++
Sbjct: 116 DDDS 119
Score = 54.5 bits (131), Expect = 5e-09
Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 921 YDVTITRRE-NEGFGFVIISSLNKAGST---IGRIIEDSPADRSGELHLGDHILAVNHVD 976
+V + R + G + + I I +S A + G + GD I+ +N ++
Sbjct: 21 EEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIE 80
Query: 977 IMSLHHGEIVNLIKDSGYCVTLTIGAP 1003
+ + + +++ +L I P
Sbjct: 81 VQNREEAVALLTSEENK-NFSLLIARP 106
Score = 41.8 bits (98), Expect = 2e-04
Identities = 15/108 (13%), Positives = 39/108 (36%), Gaps = 13/108 (12%)
Query: 583 ERPSSTDLILESDSEYLTIPIVKG--AMGFGFTIADSSHGQK-----VKKILDR---QRC 632
+ + E + + + G T+ + + + +I +
Sbjct: 5 SSGDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKD 64
Query: 633 KNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQ 680
+ EGD +I+IN + V+N + ++ + ++++ R LQ
Sbjct: 65 GRIREGDRIIQINGIEVQNREEAVALLTSEENKN---FSLLIARPELQ 109
Score = 27.9 bits (62), Expect = 7.8
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 25 VTLT-VPPDGSLNFSVGGGSDSGEFA--YVTNINKEKVKGAEKYLEEKAIILEIQGQKVA 81
V L + L +V +D + Y++ I+ + + + E I++I G +V
Sbjct: 23 VDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ 82
Query: 82 GYT 84
Sbjct: 83 NRE 85
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB:
3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 85.5 bits (211), Expect = 1e-19
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 17/109 (15%)
Query: 1024 EEGGEHDEQYHAIELSRGTRG----FGFSIRGGRE-----------FQNMALFVLQIAEN 1068
E +E+ + +G GFSI GG + + ++V +++E
Sbjct: 15 TENLYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEG 74
Query: 1069 GPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRN-GDSTVRLLIKR 1116
GPA + G L++GD+I+++NG + +TH +A + + + VRLL+ R
Sbjct: 75 GPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR 122
Score = 67.0 bits (163), Expect = 3e-13
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 18/114 (15%)
Query: 818 SDVMVITLLR----QENGFGFRIVGGTEEGSQVS------------IGHIVPGGAADLDG 861
S V + + + + GF I GG ++ + + + GG A++ G
Sbjct: 22 SMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG 81
Query: 862 RLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSM 915
L GD+I+ V+ + +H + + K S V L + R+ + A SM
Sbjct: 82 -LQIGDKIMQVNGWDMTMVTHDQARKRLTKRS-EEVVRLLVTRQSLQKAVQQSM 133
Score = 61.2 bits (148), Expect = 3e-11
Identities = 30/121 (24%), Positives = 40/121 (33%), Gaps = 17/121 (14%)
Query: 412 STSNRSNNDENYFFTLNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQ------- 464
S+ + YF + IH LGF+I GG D
Sbjct: 8 SSGVDLGTENLYF----QSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTD 63
Query: 465 ----IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVC 520
+ V GPA + G LQ GD ++ VN + TH E V+L V
Sbjct: 64 KGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTK-RSEEVVRLLVT 121
Query: 521 R 521
R
Sbjct: 122 R 122
Score = 54.3 bits (130), Expect = 1e-08
Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 14/109 (12%)
Query: 923 VTITRRENEGFGFVII-------------SSLNKAGSTIGRIIEDSPADRSGELHLGDHI 969
+ + EN GF I G + R+ E PA+ +G L +GD I
Sbjct: 30 HKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKI 88
Query: 970 LAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSAA 1018
+ VN D+ + H + + V + S A + +S
Sbjct: 89 MQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSMLSET 137
Score = 40.0 bits (93), Expect = 7e-04
Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 26/130 (20%)
Query: 583 ERPSSTDLILES---DSEYLTIPIVKGAMG----FGFTIA---------------DSSHG 620
S DL E+ S + I K G GF+I + G
Sbjct: 6 HHSSGVDLGTENLYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKG 65
Query: 621 QKVKKILDR---QRCKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRS 677
V ++ + + L GD ++++N ++ + H + + L + ++ ++S
Sbjct: 66 IYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQS 124
Query: 678 RLQHKKTSPP 687
+ + S
Sbjct: 125 LQKAVQQSML 134
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural
genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 83.2 bits (206), Expect = 2e-19
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 1032 QYHAIELS-----RGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEI 1086
Q+ + +S + FGF+I+ +FV + PA L+V DEI+ I
Sbjct: 1 QFSDMRISINQTPGKSLDFGFTIKWDIP----GIFVASVEAGSPAEFSQ-LQVDDEIIAI 55
Query: 1087 NGINTKNMTHAEAIEIIRNGDSTVRLL--IKRGG 1118
N E E + T L+ ++R G
Sbjct: 56 NNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG 89
Score = 79.4 bits (196), Expect = 3e-18
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 816 EYSDVMVITLLR--QENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVD 873
++SD+ + + FGF I + + + G A+ +L DEI++++
Sbjct: 1 QFSDMRISINQTPGKSLDFGFTIKWDIP---GIFVASVEAGSPAEF-SQLQVDDEIIAIN 56
Query: 874 NLSVLNSSHHHVVELMGKASVYGRVTLGIRRK 905
N + E M KA G + + +RR
Sbjct: 57 NTKFSYNDSKEWEEAMAKAQETGHLVMDVRRY 88
Score = 70.1 bits (172), Expect = 6e-15
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 923 VTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHH 982
+ T ++ FGF I + G + + SPA+ S L + D I+A+N+
Sbjct: 9 INQTPGKSLDFGFTI--KWDIPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDS 65
Query: 983 GEIVNLIKDSGYCVTLTI 1000
E + + L +
Sbjct: 66 KEWEEAMAKAQETGHLVM 83
Score = 63.2 bits (154), Expect = 2e-12
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 446 RGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
GFTI + + SV PA LQ D ++ +N+ +
Sbjct: 17 LDFGFTIKWDIPG----IFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEA 71
Query: 506 FQSISPGETVQLEVCR 521
+ ++V R
Sbjct: 72 MAKAQETGHLVMDVRR 87
Score = 54.4 bits (131), Expect = 2e-09
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 8/76 (10%)
Query: 606 GAMGFGFTIADSSHGQKVKKIL-----DRQRCKNLAEGDILIEINNLNVRNMCHGEVVQV 660
++ FGFTI G V + + + L D +I INN E +
Sbjct: 15 KSLDFGFTIKWDIPGIFVASVEAGSPAEFSQ---LQVDDEIIAINNTKFSYNDSKEWEEA 71
Query: 661 LKDCQRNLEANIIVQR 676
+ Q + V+R
Sbjct: 72 MAKAQETGHLVMDVRR 87
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 83.7 bits (207), Expect = 2e-19
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
I + GF++RG + V + A++ G + GD IV I ++ K +T
Sbjct: 27 IRFTAEEGDLGFTLRGNAP-----VQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLT 80
Query: 1096 HAEAIEIIRN-GDSTVRLLIKRGGSVVAPTDNAA 1128
+E ++++++ G+ + + VV+ D
Sbjct: 81 LSEVMKLLKSFGEDEIEMK------VVSLLDEVT 108
Score = 69.4 bits (170), Expect = 2e-14
Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSS 881
I +E GF + G V + + P +A + G GD IVS+ + +
Sbjct: 26 SIRFTAEEGDLGFTLRGNAP----VQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLT 80
Query: 882 HHHVVELMGKASVYGRVTLGIRRKVMPPAETTS 914
V++L+ K+ + + KV+ + +
Sbjct: 81 LSEVMKLL-KSFGEDEIEM----KVVSLLDEVT 108
Score = 64.8 bits (158), Expect = 1e-12
Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
LGFT+ G +Q+ + P A++ G + GD +V + T
Sbjct: 29 FTAEEGDLGFTLRGNAP-----VQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLS 82
Query: 501 DMVSVFQSISPGETVQLEV 519
+++ + +S + ++++V
Sbjct: 83 EVMKLLKS-FGEDEIEMKV 100
Score = 61.7 bits (150), Expect = 1e-11
Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
P + E GF + + A + + A +G GD+I+++ VD
Sbjct: 24 PRSIRF-TAEEGDLGFTLRGN---APVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKW 78
Query: 980 LHHGEIVNLIKDSGY-CVTLTIGAPI 1004
L E++ L+K G + + + + +
Sbjct: 79 LTLSEVMKLLKSFGEDEIEMKVVSLL 104
Score = 53.7 bits (129), Expect = 8e-09
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 600 TIPIVKGAMGFGFTIADSSHGQKVKKILDRQRCKN--LAEGDILIEINNLNVRNMCHGEV 657
+I GFT+ ++ +V + EGD ++ I ++ + + EV
Sbjct: 26 SIRFTAEEGDLGFTLRGNA-PVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEV 84
Query: 658 VQVLKDC 664
+++LK
Sbjct: 85 MKLLKSF 91
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 82.8 bits (205), Expect = 3e-19
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 923 VTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHH 982
+ + E G + + K T+ RI+ R G LH+GD IL +N ++ +
Sbjct: 16 IQFEKVTEEPMGICLKLN-EKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSV 74
Query: 983 GEIVNLIKDSGYCVTLTI 1000
++ +K++ ++L +
Sbjct: 75 DQLQKAMKETKGMISLKV 92
Score = 78.6 bits (194), Expect = 8e-18
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 1028 EHDEQYHAIELSRGT-RGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEI 1086
I+ + T G ++ + + V +I G G L VGDEI+EI
Sbjct: 8 HSGHMVRLIQFEKVTEEPMGICLKLN---EKQSCTVARILHGGMIHRQGSLHVGDEILEI 64
Query: 1087 NGINTKNMTHAEAIEIIRNGDSTVRLLIKRG 1117
NG N N + + + ++ + L +
Sbjct: 65 NGTNVTNHSVDQLQKAMKETKGMISLKVIPN 95
Score = 69.3 bits (170), Expect = 2e-14
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 820 VMVITLLRQEN-GFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVL 878
V +I + G + E ++ I+ GG G L GDEI+ ++ +V
Sbjct: 13 VRLIQFEKVTEEPMGICLKLN--EKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVT 70
Query: 879 NSSHHHVVELMGKASVYGRVTLGIRRKVMP 908
N S + + M + G ++L KV+P
Sbjct: 71 NHSVDQLQKAMKETK--GMISL----KVIP 94
Score = 55.1 bits (133), Expect = 2e-09
Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 5/77 (6%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
+G + + + ++ G +G L GD ++ +N V ++ +
Sbjct: 25 PMGICLKLNEKQS---CTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAM 81
Query: 507 QSISPGETVQLEVCRGY 523
+ + L+V
Sbjct: 82 KET--KGMISLKVIPNQ 96
Score = 50.8 bits (122), Expect = 5e-08
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 609 GFGFTIADSSHGQ-KVKKILDRQ---RCKNLAEGDILIEINNLNVRNMCHGEVVQVLKDC 664
G + + V +IL R +L GD ++EIN NV N ++ + +K+
Sbjct: 25 PMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET 84
Query: 665 QRNL 668
+ +
Sbjct: 85 KGMI 88
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 83.7 bits (207), Expect = 3e-19
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 1010 SSTTSVSAASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENG 1069
S + ++ ++ +G G + GG + + +FV + E+
Sbjct: 7 HHHHSSGGTENLYFQGHMILRPSMKLVKFRKG-DSVGLRLAGGND---VGIFVAGVLEDS 62
Query: 1070 PAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKR 1116
PAA +G L+ GD+I+ +N ++ N+ EA+ + + + I
Sbjct: 63 PAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILA 108
Score = 76.0 bits (187), Expect = 1e-16
Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 6/113 (5%)
Query: 412 STSNRSNNDENYFFTLNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPN 471
+ S EN ++ + + +G + GG+D + + V+ +
Sbjct: 7 HHHHSSGGTEN--LYFQGHMILRPSMKLVKFRKGDSVGLRLAGGNDVG---IFVAGVLED 61
Query: 472 GPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYP 524
PAA EG L+ GD ++ VN+ + V + GE V + +
Sbjct: 62 SPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKD 113
Score = 74.5 bits (183), Expect = 6e-16
Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 17/126 (13%)
Query: 780 STSFEHEQPLPSNDMRYIPPDNLGLPRVRPTNIKSVEYSDVMVITLLRQENGFGFRIVGG 839
S+ H + Y + P ++ + R+ + G R+ GG
Sbjct: 3 SSHHHHHHSSGGTENLYFQGHMILRPSMK--------------LVKFRKGDSVGLRLAGG 48
Query: 840 TEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVT 899
+ G V+ ++ A +G L GD+I+ V+N+ N V + VT
Sbjct: 49 NDVGIFVA--GVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVT 105
Query: 900 LGIRRK 905
+ ++K
Sbjct: 106 ILAQKK 111
Score = 62.9 bits (153), Expect = 7e-12
Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 17/123 (13%)
Query: 878 LNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSMMLGYPYDVTITRRENEGFGFVI 937
+ SSHHH S G L + ++ + R+ + G +
Sbjct: 1 MGSSHHHH-----HHSSGGTENLYFQGHMILRPSMK----------LVKFRKGDSVGLRL 45
Query: 938 ISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVT 997
N G + ++EDSPA + G L GD IL VN+VD ++ E V + D
Sbjct: 46 AGG-NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEE 103
Query: 998 LTI 1000
+TI
Sbjct: 104 VTI 106
Score = 48.7 bits (116), Expect = 6e-07
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 596 SEYLTIPIVKGAMGFGFTIAD-SSHGQKVKKIL-----DRQRCKNLAEGDILIEINNLNV 649
+ + + G +A + G V +L ++ L EGD ++ +NN++
Sbjct: 27 RPSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKE---GLEEGDQILRVNNVDF 83
Query: 650 RNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKK 683
N+ E V L D + E I+ Q+ + +++
Sbjct: 84 TNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRR 117
Score = 32.5 bits (74), Expect = 0.25
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 21 KETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKY-LEEKAIILEIQGQK 79
+ + + S+ + GG+D G F V + ++ A K LEE IL +
Sbjct: 27 RPSMKLVKFRKGDSVGLRLAGGNDVGIF--VAGVLEDSP--AAKEGLEEGDQILRVNNVD 82
Query: 80 VAGYTRRDTIAWLNHCCRSGKTLTL 104
R + + +L G+ +T+
Sbjct: 83 FTNIIREEAVLFLLD-LPKGEEVTI 106
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural
genomics consort protein binding; 2.60A {Homo sapiens}
Length = 95
Score = 81.7 bits (202), Expect = 6e-19
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 918 GYPYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDI 977
G +V + + + G I + + I RI + D + +GDHI ++N +I
Sbjct: 4 GIEKEVNVYK-SEDSLGLTI-TDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENI 61
Query: 978 MSLHHGEIVNLIKD--SGYCVTLTIGAPISGDDA 1009
+ H ++ +K+ T+ + P +A
Sbjct: 62 VGWRHYDVAKKLKELKKEELFTMKLIEPKKSSEA 95
Score = 80.2 bits (198), Expect = 2e-18
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 7/88 (7%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+ + + G +I F+ +I + G + VGD I ING N
Sbjct: 9 VNVYKSEDSLGLTITDN---GVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWR 65
Query: 1096 HAEAIEIIRNGDSTVRLLIKRGGSVVAP 1123
H + + ++ +K ++ P
Sbjct: 66 HYDVAKKLKELKKEELFTMK----LIEP 89
Score = 72.8 bits (179), Expect = 8e-16
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 434 GERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKC 493
G ++ KS LG TI IK + G + GD + +N +
Sbjct: 4 GIEKEVNVYKSEDSLGLTITDNGVGY---AFIKRIKDGGVIDSVKTICVGDHIESINGEN 60
Query: 494 VLGYTHHDMVSVFQSISPGETVQLEVCR 521
++G+ H+D+ + + E +++
Sbjct: 61 IVGWRHYDVAKKLKELKKEELFTMKLIE 88
Score = 71.3 bits (175), Expect = 4e-15
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 822 VITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSS 881
+ + + E+ G I I I GG D +C GD I S++ +++
Sbjct: 8 EVNVYKSEDSLGLTITDNGVGY--AFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWR 65
Query: 882 HHHVVELMGKASVYGRVTL 900
H+ V + + + T+
Sbjct: 66 HYDVAKKLKELKKEELFTM 84
Score = 57.4 bits (139), Expect = 2e-10
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 597 EYLTIPIVKGAMGFGFTIADSSHGQ-KVKKILDR---QRCKNLAEGDILIEINNLNVRNM 652
+ + K G TI D+ G +K+I D K + GD + IN N+
Sbjct: 5 IEKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGW 64
Query: 653 CHGEVVQVLKDCQRNLEANIIV 674
H +V + LK+ ++ + +
Sbjct: 65 RHYDVAKKLKELKKEELFTMKL 86
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 82.2 bits (203), Expect = 7e-19
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
I + GF++RG + V + + A+L G K GD IV I G++ K +T
Sbjct: 19 IHFTVEEGDLGFTLRGNT-----PVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLT 72
Query: 1096 HAEAIEIIRN-GDSTVRLLIKRGGSVVAPTDNAAGIYS 1132
+E ++++++ G V + + + N +G S
Sbjct: 73 VSEVMKLLKSFGGEEVEMKVVSLLDSTSSMHNKSGPSS 110
Score = 69.1 bits (169), Expect = 3e-14
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 10/101 (9%)
Query: 816 EYSDVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNL 875
+S I +E GF + G + V + + P +A L G GD IVS+ +
Sbjct: 12 RWSPPRGIHFTVEEGDLGFTLRGN----TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGV 66
Query: 876 SVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAETTSMM 916
+ V++L+ K+ V + KV+ ++TS M
Sbjct: 67 DCKWLTVSEVMKLL-KSFGGEEVEM----KVVSLLDSTSSM 102
Score = 66.0 bits (161), Expect = 4e-13
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHH 500
LGFT+ G +Q+ + P+ A+L G + GD +V + T
Sbjct: 21 FTVEEGDLGFTLRGNTP-----VQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVS 74
Query: 501 DMVSVFQSISPGETVQLEVCRGYPLPFDPNDPN 533
+++ + +S GE V+++V L + N
Sbjct: 75 EVMKLLKS-FGGEEVEMKVVS--LLDSTSSMHN 104
Score = 65.2 bits (159), Expect = 7e-13
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 920 PYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
P + T E GF + + + + A +G GD+I+++ VD
Sbjct: 16 PRGIHFTVEEG-DLGFTLRGN---TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKW 70
Query: 980 LHHGEIVNLIKDSGY-CVTLTIGAPISGDDASSTTSVSAAS 1019
L E++ L+K G V + + + + D SS + S S
Sbjct: 71 LTVSEVMKLLKSFGGEEVEMKVVSLL--DSTSSMHNKSGPS 109
Score = 52.9 bits (127), Expect = 2e-08
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 600 TIPIVKGAMGFGFTIADSSHGQKVKKILDRQRCKN--LAEGDILIEINNLNVRNMCHGEV 657
I GFT+ ++ +V + EGD ++ I ++ + + EV
Sbjct: 18 GIHFTVEEGDLGFTLRGNT-PVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEV 76
Query: 658 VQVLKDCQRN---LEANIIVQRSRLQHKKTSP 686
+++LK ++ ++ + H K+ P
Sbjct: 77 MKLLKSFGGEEVEMKVVSLLDSTSSMHNKSGP 108
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 82.3 bits (203), Expect = 1e-18
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 28/106 (26%)
Query: 1036 IELSRGTRGFGFSIRGGREF---------------------------QNMALFVLQIAEN 1068
+ L R ++GFGF++R + +FV Q+ E
Sbjct: 12 VTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEG 71
Query: 1069 GPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLI 1114
GPA G L GD I+++NG + T+++ I +I+N D+T+ L +
Sbjct: 72 GPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSV 116
Score = 68.4 bits (167), Expect = 8e-14
Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 35/127 (27%)
Query: 913 TSMMLGYPYDVTITRRENEGFGFVIISSLNKAGST------------------------- 947
+S G P VT+ +R ++GFGF + + +
Sbjct: 2 SSGSSGGPKTVTL-KRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPM 60
Query: 948 ----IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI--- 1000
+ ++ E PA +G L GD I+ VN ++ + +++ LI++S + L++
Sbjct: 61 DTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPK 119
Query: 1001 -GAPISG 1006
P SG
Sbjct: 120 DSGPSSG 126
Score = 61.1 bits (148), Expect = 3e-11
Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 35/116 (30%)
Query: 822 VITLLRQENGFGFRIVGGT----------------------------EEGSQVSIGHIVP 853
+TL R GFGF + E + + +
Sbjct: 11 TVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKE 70
Query: 854 GGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPP 909
GG A G LCTGD I+ V+ SV+ ++ V+ L+ + + L VMP
Sbjct: 71 GGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNSD--TTLEL----SVMPK 119
Score = 53.8 bits (129), Expect = 1e-08
Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 30/113 (26%)
Query: 441 LVKSLRGLGFTIVGGDDSKEEFLQ---------------------------IKSVVPNGP 473
L ++ +G GFT+ E +K V GP
Sbjct: 14 LKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGP 73
Query: 474 AALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLP 526
A G L TGD ++ VN + V+G T+ ++++ Q + T++L V P
Sbjct: 74 AFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQ--NSDTTLELSVMPKDSGP 123
Score = 40.7 bits (95), Expect = 4e-04
Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 35/99 (35%)
Query: 600 TIPIVKGAMGFGFTI-------------------------------ADSSHGQKVKKILD 628
T+ + + + GFGFT+ + VK++ +
Sbjct: 11 TVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKE 70
Query: 629 R---QRCKNLAEGDILIEINNLNVRNMCHGEVVQVLKDC 664
L GD +I++N +V + +V+ ++++
Sbjct: 71 GGPAFEA-GLCTGDRIIKVNGESVIGKTYSQVIALIQNS 108
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 79.3 bits (196), Expect = 5e-18
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 923 VTITRRENEGFGFVIISSLNKAGST-IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
V + +E G + +N+ + RI+ R G LH+GD I +N + + +
Sbjct: 5 VQFQKNTDEPMGITL--KMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQT 62
Query: 982 HGEIVNLIKDSGYCVTLTI 1000
++ ++++ +T I
Sbjct: 63 VEQLQKMLREMRGSITFKI 81
Score = 74.7 bits (184), Expect = 2e-16
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 1036 IELSRGT-RGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNM 1094
++ + T G +++ V +I G G L VGDEI EINGI+ N
Sbjct: 5 VQFQKNTDEPMGITLKMNELNH---CIVARIMHGGMIHRQGTLHVGDEIREINGISVANQ 61
Query: 1095 THAEAIEIIRNGDSTVRLLI 1114
T + +++R ++ I
Sbjct: 62 TVEQLQKMLREMRGSITFKI 81
Score = 68.5 bits (168), Expect = 2e-14
Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 822 VITLLRQEN-GFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNS 880
++ + + G + E + + I+ GG G L GDEI ++ +SV N
Sbjct: 4 LVQFQKNTDEPMGITLKMN--ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQ 61
Query: 881 SHHHVVELMGKASVYGRVTLGIRRKVMP 908
+ + +++ + G +T K++P
Sbjct: 62 TVEQLQKMLREMR--GSITF----KIVP 83
Score = 53.9 bits (130), Expect = 3e-09
Identities = 11/77 (14%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
+G T+ + + + ++ G +G L GD + +N V T + +
Sbjct: 14 PMGITLKMNELNH---CIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKML 70
Query: 507 QSISPGETVQLEVCRGY 523
+ + ++ ++ Y
Sbjct: 71 REM--RGSITFKIVPSY 85
Score = 52.0 bits (125), Expect = 2e-08
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 609 GFGFTIADSSHGQ-KVKKILDR---QRCKNLAEGDILIEINNLNVRNMCHGEVVQVLKDC 664
G T+ + V +I+ R L GD + EIN ++V N ++ ++L++
Sbjct: 14 PMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREM 73
Query: 665 QRNL 668
+ ++
Sbjct: 74 RGSI 77
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 82.1 bits (204), Expect = 5e-18
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 126 KGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGL 185
+ + + L D +P TTR P+ E NG +Y F+S ++ Q + LE G
Sbjct: 18 RRHIKNTLITKHPDRFAY-PIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGS 76
Query: 186 YEGNHYGTPK-PVKE 199
+E YGT +++
Sbjct: 77 HEDAMYGTKLETIRK 91
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 81.9 bits (203), Expect = 1e-17
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 126 KGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGL 185
+ + + L + + VP TTR PR E +G +Y F+S EE + + LE G
Sbjct: 32 RSHIKNALLSQNPEKFVY-PVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGS 90
Query: 186 YEGNHYGTPK-PVKE 199
Y+GN +GT V +
Sbjct: 91 YQGNMFGTKFETVHQ 105
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 80.6 bits (200), Expect = 3e-17
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 126 KGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGL 185
KG+V + + ++ +TTR PR+GE +GVDY F S E F+Q K G +LE
Sbjct: 21 KGTVREAVFKDPETSFDY-SISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAE 79
Query: 186 YEGNHYGTPK-PVKE 199
Y GN+YGTP V+E
Sbjct: 80 YVGNYYGTPLEYVEE 94
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 80.6 bits (200), Expect = 3e-17
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 126 KGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGL 185
KG+V + + ++ +TTR R+GE++GVDY F + + F+ L K +E
Sbjct: 19 KGTVRKRIFEDPSTSYKY-SISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAE 77
Query: 186 YEGNHYGTPK-PVKE 199
Y GN+YGTP VK+
Sbjct: 78 YVGNYYGTPVQYVKD 92
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear
protein, mRNA splicing, ribonucleoprotein; NMR
{Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Length = 75
Score = 75.7 bits (186), Expect = 4e-17
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 300 WEKAYTEKGEVYFIDHNSSTSSWLDPRLCKFQKKLEDCSDDELPYGWERIDDPAYGTYYI 359
W++A G +Y+ + + S+W P+ + + GW+ YY
Sbjct: 4 WKEAKDASGRIYYYNTLTKKSTWEKPK-----ELISQEELLLRENGWKAAKTADGKVYYY 58
Query: 360 DHVNKQTQYENPVLQAK 376
+ ++T + P + K
Sbjct: 59 NPTTRETSWTIPAFEKK 75
Score = 48.0 bits (114), Expect = 3e-07
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 260 ELNDNNGRESPPSYYNPYIGQGLKE--IDPLLELDLGPLPPRWEKAYTEKGEVYFIDHNS 317
E D +GR YYN + E + + + +L W+ A T G+VY+ + +
Sbjct: 6 EAKDASGR---IYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTT 62
Query: 318 STSSWLDPRLCK 329
+SW P K
Sbjct: 63 RETSWTIPAFEK 74
Score = 32.6 bits (74), Expect = 0.092
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 345 GWERIDDPAYGTYYIDHVNKQTQYENP 371
W+ D + YY + + K++ +E P
Sbjct: 3 IWKEAKDASGRIYYYNTLTKKSTWEKP 29
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 79.1 bits (196), Expect = 7e-17
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 126 KGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGL 185
K ++ L D+ +V TTRTPR GE+NG DY F+S++EFK + K+ +E
Sbjct: 14 KSTLLKKLFAEYPDSFGF-SVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQ 72
Query: 186 YEGNHYGTPK-PVKE 199
+ GN+YG+ VK+
Sbjct: 73 FSGNYYGSTVASVKQ 87
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 79.2 bits (196), Expect = 2e-16
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 126 KGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGL 185
K +V + L ++N+ +V VTTR R GE G DY F+ EEF +L +G ++E
Sbjct: 40 KTTVANKLLEKQKNNIVK-SVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAE 98
Query: 186 YEGNHYGTPK-PVKE 199
GN YG P+ +++
Sbjct: 99 VFGNFYGVPRKNLED 113
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 77.5 bits (192), Expect = 3e-16
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 126 KGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGL 185
K ++ L +++ +V TTR PR GE +G DY F++ E ++ +G +E
Sbjct: 17 KSTLLKKLFQEH-SSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAE 75
Query: 186 YEGNHYGTPK-PVKE 199
+ GN YGT K V+
Sbjct: 76 FSGNLYGTSKEAVRA 90
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 77.2 bits (191), Expect = 5e-16
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 126 KGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGL 185
KG++ + + ++ TTR R+ E NGVDY F+ ++F++ K G LE
Sbjct: 25 KGTLIKKVLSEFPSRFRF-SISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDK 83
Query: 186 YEGNHYGTPK-PVKE 199
Y N YGT K
Sbjct: 84 YANNFYGTLKSEYDL 98
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 72.9 bits (179), Expect = 8e-16
Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 923 VTITRRENEG-FGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
V I R + GF + I ++ A+R G + +G I+ +N +++
Sbjct: 15 VLIRRPDLRYQLGFSV------QNGIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATP 67
Query: 982 HGEIVNLIKDSGYCVTLTI 1000
H +IV+++ ++ + +
Sbjct: 68 HEKIVHILSNAVGEIHMKT 86
Score = 72.1 bits (177), Expect = 1e-15
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 1036 IELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
I GFS++ G + + G A G ++VG I+EING +
Sbjct: 17 IRRPDLRYQLGFSVQNG--------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATP 67
Query: 1096 HAEAIEIIRNGDSTVRLLI 1114
H + + I+ N + +
Sbjct: 68 HEKIVHILSNAVGEIHMKT 86
Score = 62.1 bits (151), Expect = 4e-12
Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 811 NIKSVEYSDVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIV 870
+++++ ++I GF + G I ++ GG A+ G + G I+
Sbjct: 5 HLETMGNVTTVLIRRPDLRYQLGFSVQNGI-------ICSLMRGGIAERGG-VRVGHRII 56
Query: 871 SVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPA 910
++ SV+ + H +V ++ A G + + K MP A
Sbjct: 57 EINGQSVVATPHEKIVHILSNAV--GEIHM----KTMPAA 90
Score = 47.4 bits (113), Expect = 6e-07
Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
LGF++ G I S++ G A G ++ G ++ +N + V+ H +V +
Sbjct: 25 QLGFSVQNG--------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHIL 75
Query: 507 QSISPGETVQLEV 519
+ + ++
Sbjct: 76 SNA--VGEIHMKT 86
Score = 44.0 bits (104), Expect = 1e-05
Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 12/70 (17%)
Query: 609 GFGFTIADSSHGQKVKKIL-----DRQRCKNLAEGDILIEINNLNVRNMCHGEVVQVLKD 663
GF++ + ++ +R + G +IEIN +V H ++V +L +
Sbjct: 25 QLGFSV----QNGIICSLMRGGIAERGG---VRVGHRIIEINGQSVVATPHEKIVHILSN 77
Query: 664 CQRNLEANII 673
+ +
Sbjct: 78 AVGEIHMKTM 87
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 76.4 bits (189), Expect = 9e-16
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 126 KGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGL 185
K S+ L ++ TTR R G+ GVDY F+ F+ + K G LE
Sbjct: 20 KTSLVRALVK--ALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHAT 77
Query: 186 YEGNHYGTPK-PVKE 199
HYGT K V
Sbjct: 78 IYERHYGTEKDWVLR 92
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; MAGI1, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Length = 57
Score = 71.3 bits (175), Expect = 1e-15
Identities = 29/44 (65%), Positives = 33/44 (75%)
Query: 290 ELDLGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRLCKFQKK 333
E +LGPLP WE AYTE GEVYFIDHN+ T+SWLDPR Q+
Sbjct: 9 EDNLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNKQQS 52
Score = 51.6 bits (124), Expect = 9e-09
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 338 SDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQAKHRDQGAGPSE 386
+ LP WE Y+IDH K T + +P K Q +GPS
Sbjct: 11 NLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNK---QQSGPSS 56
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; MAGI-1, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 60
Score = 70.7 bits (173), Expect = 2e-15
Identities = 30/51 (58%), Positives = 40/51 (78%), Gaps = 1/51 (1%)
Query: 337 CSDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQAKH-RDQGAGPSE 386
S+ ELP GWE+I+DP YG YY+DH+N++TQYENPVL+AK + +GPS
Sbjct: 9 DSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLEAKRKKQLESGPSS 59
Score = 53.8 bits (129), Expect = 2e-09
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 292 DLGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
LP WEK +Y++DH + + + +P L
Sbjct: 10 SELELPAGWEKIEDPVYGIYYVDHINRKTQYENPVL 45
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain,
solution, complex, ligase/signaling protein complex; NMR
{Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Length = 53
Score = 70.1 bits (172), Expect = 2e-15
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 290 ELDLGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
++ GPLPP WE YT GE +F+DHN+ +++ DPR
Sbjct: 13 LINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRP 50
Score = 50.1 bits (120), Expect = 4e-08
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 338 SDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQA 375
++ LP GWE A +++DH ++T +E+P A
Sbjct: 15 NEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPGA 52
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 75.3 bits (186), Expect = 2e-15
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 126 KGSVDHDL-QNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESG 184
K S+ L + + + +V TTR PR GE++G Y F++ +EFK++ LE
Sbjct: 29 KSSLIQALLKTQPLYDTQV-SVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHA 87
Query: 185 LYEGNHYGTPK-PVKE 199
GN+YGT + +++
Sbjct: 88 EVFGNYYGTSREAIEQ 103
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif,
liddle syndrome, proline-rich, ligase; NMR {Rattus
norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Length = 50
Score = 70.0 bits (172), Expect = 3e-15
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 287 PLLELDLGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
P+ DLGPLPP WE+ G V+FI+HN + W DPR+
Sbjct: 3 PVDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRM 43
Score = 55.0 bits (133), Expect = 6e-10
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 334 LEDCSDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQAKH 377
++ LP GWE ++I+H K+TQ+E+P +Q
Sbjct: 4 VDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQNVA 47
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription;
NMR {Oryzias latipes}
Length = 46
Score = 69.6 bits (171), Expect = 3e-15
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 287 PLLELDLGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
P GPLP WE+A T +GE+Y+I+H + T+SWLDPRL
Sbjct: 3 PNSSPASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRL 43
Score = 56.1 bits (136), Expect = 2e-10
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 335 EDCSDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQAK 376
+ LP GWE+ P YYI+H NK T + +P L+ +
Sbjct: 5 SSPASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRLETR 46
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 74.9 bits (185), Expect = 3e-15
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 126 KGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGL 185
KG++ L N + Y +V TTR R+ E GVDY F+ F+ K+ LE
Sbjct: 36 KGTLIKKLLNEFPNYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDN 94
Query: 186 YEGNHYGTPK-PVKE 199
Y N YGT K +
Sbjct: 95 YANNFYGTLKSEYDK 109
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW
domain; NMR {Homo sapiens}
Length = 39
Score = 69.1 bits (170), Expect = 5e-15
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 293 LGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
+GPLPP WE+ G +Y++DH + T++W P L
Sbjct: 4 MGPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTL 38
Score = 56.0 bits (136), Expect = 2e-10
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 342 LPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQ 374
LP GWER D YY+DH + T ++ P L+
Sbjct: 7 LPPGWERRVDNMGRIYYVDHFTRTTTWQRPTLE 39
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 70.6 bits (173), Expect = 5e-15
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 923 VTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHH 982
V I + E G + I RI+ + G LH+GD I VN +
Sbjct: 10 VGIRKTAGEHLGVTF--RVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQP-VGSDP 66
Query: 983 GEIVNLIKDSGYCVTLTIG-APISG 1006
+ L++++ V L I P SG
Sbjct: 67 RALQELLRNASGSVILKILSGPSSG 91
Score = 65.5 bits (160), Expect = 3e-13
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 1027 GEHDEQYHAIELSRGT-RGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVE 1085
G + + + G + R + L + +I G A G L VGD I E
Sbjct: 1 GSSGSSGRMVGIRKTAGEHLGVTFRV----EGGELVIARILHGGMVAQQGLLHVGDIIKE 56
Query: 1086 INGINTKNMTHAEAIEIIRNGDSTVRLLIKRG 1117
+NG + E++RN +V L I G
Sbjct: 57 VNGQPVGS-DPRALQELLRNASGSVILKILSG 87
Score = 60.2 bits (146), Expect = 2e-11
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 816 EYSDVMVITLLRQEN-GFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDN 874
S ++ + + G EG ++ I I+ GG G L GD I V+
Sbjct: 3 SGSSGRMVGIRKTAGEHLGVTFR---VEGGELVIARILHGGMVAQQGLLHVGDIIKEVNG 59
Query: 875 LSVLNSSHHHVVELMGKASVYGRVTLGIRR 904
V S + EL+ AS G V L I
Sbjct: 60 QPV-GSDPRALQELLRNAS--GSVILKILS 86
Score = 49.4 bits (118), Expect = 2e-07
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
LG T L I ++ G A +G L GD++ VN + V G + +
Sbjct: 19 HLGVTFRVEGGE----LVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELL 73
Query: 507 QSISPGETVQLEVCRGY 523
+ + +V L++ G
Sbjct: 74 R--NASGSVILKILSGP 88
Score = 45.9 bits (109), Expect = 2e-06
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 600 TIPIVKGAM-GFGFTIADSSHGQKVKKILDRQ---RCKNLAEGDILIEINNLNVRNMCHG 655
+ I K A G T + +IL + L GDI+ E+N V +
Sbjct: 9 MVGIRKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGS-DPR 67
Query: 656 EVVQVLKDCQRNL 668
+ ++L++ ++
Sbjct: 68 ALQELLRNASGSV 80
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human
modular domain, complex, HOST interaction, ligase; NMR
{Homo sapiens} PDB: 2kq0_A 2laj_A*
Length = 49
Score = 69.3 bits (170), Expect = 5e-15
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 290 ELDLGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
E++ G LP WE + G +FIDHN+ T++W DPRL
Sbjct: 7 EIEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRL 44
Score = 56.9 bits (138), Expect = 9e-11
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 335 EDCSDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQA 375
+ LP GWE P ++IDH K T +E+P L+
Sbjct: 6 SEIEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKI 46
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo
sapiens}
Length = 49
Score = 69.0 bits (169), Expect = 6e-15
Identities = 23/39 (58%), Positives = 31/39 (79%)
Query: 337 CSDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQA 375
S+ ELP GWE+I+DP YG YY+DH+N++TQYENP +
Sbjct: 9 DSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPSGPS 47
Score = 53.2 bits (128), Expect = 2e-09
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 292 DLGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
LP WEK +Y++DH + + + +P
Sbjct: 10 SELELPAGWEKIEDPVYGIYYVDHINRKTQYENPSG 45
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell
junction, cell adhesion, signaling protein, nucleotide
exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Length = 94
Score = 70.4 bits (172), Expect = 7e-15
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 1034 HAIELSRG---TRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGIN 1090
H+I + + +GFS+ E L+V + E G A+ G LK GDEI+EIN
Sbjct: 8 HSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRA 66
Query: 1091 TKNMTHAEAIEIIRNGDSTVRLLIKR 1116
+ + + + ++ LL++
Sbjct: 67 ADALNSSMLKDFLSQ--PSLGLLVRT 90
Score = 53.4 bits (128), Expect = 6e-09
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
GF++ ++ L + SV G A+ +G L+ GD ++ +N++ +
Sbjct: 21 TYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFL 79
Query: 507 QSISPGETV 515
S G V
Sbjct: 80 SQPSLGLLV 88
Score = 50.7 bits (121), Expect = 5e-08
Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 822 VITLLRQEN---GFGFRIVGGTEEG-SQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSV 877
I + + + +GF + E+G ++ + + G A G L GDEI+ ++N +
Sbjct: 9 SIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAA 67
Query: 878 LNSSHHHVVELMGKASVYGRVTLGIRR 904
+ + + + + S + L +R
Sbjct: 68 DALNSSMLKDFLSQPS----LGLLVRT 90
Score = 47.3 bits (112), Expect = 8e-07
Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 921 YDVTITRREN--EGFGFVIISSLNKAGST---IGRIIEDSPADRSGELHLGDHILAVNHV 975
+ + I + + + +GF + SS+ + G + + E A + G L GD IL +N+
Sbjct: 8 HSIHIEKSDTAADTYGFSL-SSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNR 65
Query: 976 DIMSLHHGEIVNLIKDSGYCVTLTI 1000
+L+ + + + + L +
Sbjct: 66 AADALNSSMLKDFLSQP--SLGLLV 88
Score = 28.8 bits (64), Expect = 2.9
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 607 AMGFGFTIA----DSSHGQKVKKILDRQRC--KNLAEGDILIEINNLNVRNMCHGEVVQV 660
A +GF+++ D V + + K L GD ++EINN + +
Sbjct: 19 ADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDF 78
Query: 661 LK 662
L
Sbjct: 79 LS 80
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline
type II helix, PPII, ligase/signaling protein complex;
NMR {Homo sapiens} PDB: 2lb1_A
Length = 42
Score = 68.4 bits (168), Expect = 7e-15
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 290 ELDLGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
L GPLPP WE T G VYF+DHN+ T+ + DPRL
Sbjct: 2 PLGSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 39
Score = 53.0 bits (128), Expect = 2e-09
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 338 SDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQA 375
LP GWE + Y++DH N+ TQ+ +P L A
Sbjct: 4 GSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLSA 41
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 49
Score = 68.7 bits (168), Expect = 7e-15
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 338 SDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQA 375
+ LP GWER++ +GTYY+DH NK+ QY +P +
Sbjct: 10 EREGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSGPS 47
Score = 43.3 bits (102), Expect = 8e-06
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 291 LDLGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
L+ LPP WE+ + + Y++DH + + + P
Sbjct: 9 LEREGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSG 45
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65
mutant, structural protein; NMR {Homo sapiens} SCOP:
b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Length = 46
Score = 68.4 bits (168), Expect = 8e-15
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 292 DLGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRLCKFQK 332
D PLP WE A T G+ YF +H T++W DPR +
Sbjct: 5 DDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLSQ 45
Score = 51.9 bits (125), Expect = 6e-09
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 335 EDCSDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQAKHR 378
E D LP GWE + Y+ +H+++ T +++P +
Sbjct: 2 EIPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLSQ 45
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling
protein-TRAN complex; NMR {Homo sapiens}
Length = 38
Score = 68.0 bits (167), Expect = 9e-15
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 294 GPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
GPLP WE+A T+ GE+Y+I+H + T+SWLDPRL
Sbjct: 5 GPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPRL 38
Score = 52.6 bits (127), Expect = 3e-09
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 339 DDELPYGWERIDDPAYGTYYIDHVNKQTQYENP 371
+ LP GWE+ YYI+H NK T + +P
Sbjct: 4 EGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDP 36
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif,
binding affinity, signalling protein,ligase; NMR
{Drosophila melanogaster}
Length = 46
Score = 68.1 bits (167), Expect = 1e-14
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 287 PLLELDLGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
PL + PLPPRW G +FIDH S ++W+DPR
Sbjct: 2 PLGSGEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRN 42
Score = 52.7 bits (127), Expect = 3e-09
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 338 SDDELPYGWERIDDPAYGTYYIDHVNKQTQYENP 371
++ LP W P T++IDH +++T + +P
Sbjct: 7 EEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDP 40
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 69.3 bits (169), Expect = 2e-14
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 1036 IELSRG---TRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTK 1092
I + + +GFS+ E L+V + E G A+ G LK GDEI+EIN
Sbjct: 19 IHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAAD 77
Query: 1093 NMTHAEAIEIIRNGDSTVRL 1112
+ + + + + +
Sbjct: 78 ALNSSMLKDFLSQPSLGLLV 97
Score = 58.9 bits (142), Expect = 1e-10
Identities = 16/98 (16%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 819 DVMVITLLRQEN---GFGFRIVGGTEEG-SQVSIGHIVPGGAADLDGRLCTGDEIVSVDN 874
I + + + +GF + E+G ++ + + G A G L GDEI+ ++N
Sbjct: 15 VTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINN 73
Query: 875 LSVLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAET 912
+ + + + + + S+ + + ++ E+
Sbjct: 74 RAADALNSSMLKDFLSQPSLG--LLVRTYPELEEGVES 109
Score = 56.6 bits (136), Expect = 9e-10
Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 920 PYDVTITRREN--EGFGFVIISSLNKAGST--IGRIIEDSPADRSGELHLGDHILAVNHV 975
+ I + + + +GF + S + + E A + G L GD IL +N+
Sbjct: 16 TQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNR 74
Query: 976 DIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTS 1014
+L+ + + + + + + S +S
Sbjct: 75 AADALNSSMLKDFLSQPSLGLLVRTYPELEEGVESGPSS 113
Score = 55.4 bits (133), Expect = 2e-09
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 446 RGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
GF++ ++ L + SV G A+ +G L+ GD ++ +N++ +
Sbjct: 29 DTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDF 87
Query: 506 FQSISPGETV 515
S G V
Sbjct: 88 LSQPSLGLLV 97
Score = 31.2 bits (70), Expect = 0.69
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 9/88 (10%)
Query: 606 GAMGFGFTIA--DSSHGQK--VKKILDRQRCKN--LAEGDILIEINNLNVRNMCHGEVVQ 659
A +GF+++ + ++ V + + L GD ++EINN + +
Sbjct: 27 AADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKD 86
Query: 660 VLKDCQRNLEANIIVQRSRLQHKKTSPP 687
L L ++ L+ S P
Sbjct: 87 FLSQPSLGL---LVRTYPELEEGVESGP 111
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Length = 41
Score = 66.8 bits (164), Expect = 3e-14
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 294 GPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
LPP WE G +FIDHN+ T++W DPRL
Sbjct: 7 SFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRL 40
Score = 55.6 bits (135), Expect = 2e-10
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 338 SDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQ 374
LP GWE P ++IDH K T +E+P L+
Sbjct: 5 IQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRLK 41
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 71.4 bits (176), Expect = 4e-14
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 126 KGSVDHDLQNIIRDNLYLRTVPVTTRTPRDGELNGVDYTFLSIEEFKQLEKSGCLLESGL 185
K +V L+ I NL+ +V TTR PR GE++GVDY F+ F+QL G LLE
Sbjct: 33 KSTVVRCLRERI-PNLHF-SVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAE 90
Query: 186 YEGNHY--GTPK-PVKE 199
G + GT PV+
Sbjct: 91 IHGGLHRSGTLAQPVRA 107
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 40
Score = 65.7 bits (161), Expect = 6e-14
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 293 LGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
LP WE+AYT G YFI+H + T+SW+ P +
Sbjct: 5 SSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPVM 39
Score = 54.2 bits (131), Expect = 9e-10
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 338 SDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVL 373
LPYGWE Y+I+HV + T + +PV+
Sbjct: 4 GSSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPVM 39
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Length = 36
Score = 65.2 bits (160), Expect = 8e-14
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 294 GPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
PLPP WE+ G Y+++HN+ ++ W P L
Sbjct: 3 PPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPSL 36
Score = 54.8 bits (133), Expect = 5e-10
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 340 DELPYGWERIDDPAYGTYYIDHVNKQTQYENPVL 373
LP GWE D TYY++H N+ TQ+ P L
Sbjct: 3 PPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPSL 36
>1ymz_A CC45; artificial protein, computational design, unknown function;
NMR {Synthetic} SCOP: k.22.1.1
Length = 43
Score = 65.3 bits (160), Expect = 1e-13
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 294 GPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
PLPP WE+ +G+VY+ + + T++W P +
Sbjct: 7 MPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTI 40
Score = 55.3 bits (134), Expect = 4e-10
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 340 DELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQAK 376
LP GWER D YY + T +E P + +
Sbjct: 7 MPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTIILE 43
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 40
Score = 64.9 bits (159), Expect = 1e-13
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 292 DLGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPR 326
LP WE +T G YF+DHN T++++DPR
Sbjct: 4 GSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPR 38
Score = 50.7 bits (122), Expect = 1e-08
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 338 SDDELPYGWERIDDPAYGTYYIDHVNKQTQYENP 371
LP GWE Y++DH + T Y +P
Sbjct: 4 GSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDP 37
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 71.7 bits (176), Expect = 1e-13
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 139 DNLYLRTVPVTTRTPRDGELNGVDYTFLSI-EEFKQLEKSGCLLESGLYEGNHYGTPK-P 196
+ + VP TTR R+ E++G DY F+S E+ ++ ++ +E+G Y N YGT
Sbjct: 122 PDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVAS 181
Query: 197 VKE 199
V+E
Sbjct: 182 VRE 184
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: k.22.1.1
Length = 49
Score = 64.7 bits (158), Expect = 2e-13
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 292 DLGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
+ PLPP W +T +G Y+IDHN++T+ W P
Sbjct: 8 EDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLE 43
Score = 50.0 bits (120), Expect = 3e-08
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 338 SDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQA 375
D LP GW YYIDH T + +P+
Sbjct: 8 EDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLESG 45
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB:
2lb2_A*
Length = 36
Score = 64.1 bits (157), Expect = 2e-13
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 294 GPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
LP WE+ KG Y+++HN+ T++W P +
Sbjct: 3 PGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPIM 36
Score = 56.0 bits (136), Expect = 2e-10
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 340 DELPYGWERIDDPAYGTYYIDHVNKQTQYENPVL 373
LP GWE D TYY++H N+ T + P++
Sbjct: 3 PGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPIM 36
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {}
SCOP: k.22.1.1
Length = 37
Score = 64.1 bits (157), Expect = 2e-13
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 294 GPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
LPP W++ T G+ Y+ +HN+ TS+W DPR+
Sbjct: 2 MGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35
Score = 51.0 bits (123), Expect = 9e-09
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 341 ELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQA 375
LP GW+ TYY +H K + + +P + +
Sbjct: 3 GLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRMSS 37
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR
{Homo sapiens}
Length = 54
Score = 64.1 bits (156), Expect = 4e-13
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 294 GPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
G LP WE+ E G+V+F+DH + +++LDPRL
Sbjct: 10 GDLPYGWEQETDENGQVFFVDHINKRTTYLDPRL 43
Score = 53.7 bits (129), Expect = 2e-09
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 341 ELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQAKHRDQGAGP 384
+LPYGWE+ D +++DH+NK+T Y +P L D P
Sbjct: 11 DLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDNPTKP 54
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 67.3 bits (163), Expect = 1e-12
Identities = 33/189 (17%), Positives = 57/189 (30%), Gaps = 21/189 (11%)
Query: 930 NEGFGFVIISSLNKAGS---------TIGRIIEDSPADRSGELHLGDHILAVNHVDIMSL 980
+ GF I + G+ + R+ + PA L GD I+ N +++
Sbjct: 1 SPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINI 58
Query: 981 HHGEIVNLIKDSGYCVTLTI--------GAPISGDDASSTTSVSAASHREYEEGGEHDEQ 1032
HG+ V+L+K V L I I S +S E
Sbjct: 59 EHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPT 118
Query: 1033 YHAIELSRGTRGFGFSIRGGREFQ-NMALFVLQIAENGPAALDGHLKVGDE-IVEINGIN 1090
I G + E N + + + A LK G + + + +
Sbjct: 119 SLLISWDASYYGVSYYRITYGETGGNSPVQEFTVPYSSSTATISGLKPGVDYTITVYAYS 178
Query: 1091 TKNMTHAEA 1099
+H +
Sbjct: 179 DYYGSHHYS 187
Score = 67.3 bits (163), Expect = 1e-12
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 1044 GFGFSIRGGREFQN-------MALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTH 1096
GFSI GG + +FV ++ GPA L+ GD+I++ NG + N+ H
Sbjct: 3 ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEH 60
Query: 1097 AEAIEIIRNGDSTVRLLIKRGGSVVAPTDNAAGIYSSDT 1135
+A+ +++ +TV L+I R A + +
Sbjct: 61 GQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGG 99
Score = 51.9 bits (123), Expect = 2e-07
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 9/95 (9%)
Query: 447 GLGFTIVGGDDSK-------EEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTH 499
LGF+I GG + ++ + + V P GPA LQ GD ++ N + H
Sbjct: 3 ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEH 60
Query: 500 HDMVSVFQSISPGETVQLEVCRGYPLPFDPNDPNT 534
VS+ ++ + + G +
Sbjct: 61 GQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVE 95
Score = 48.8 bits (115), Expect = 2e-06
Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 10/92 (10%)
Query: 831 GFGFRIVGGTEEGSQ--------VSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSH 882
GF I GG + + + P G A L GD+I+ + S +N H
Sbjct: 3 ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEH 60
Query: 883 HHVVELMGKASVYGRVTLGIRRKVMPPAETTS 914
V L+ + + E
Sbjct: 61 GQAVSLLKTFQNTVELIIVREVGNGAKQEIRV 92
Score = 38.8 bits (89), Expect = 0.004
Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 12/128 (9%)
Query: 609 GFGFTIADSSHGQK-----------VKKILDR-QRCKNLAEGDILIEINNLNVRNMCHGE 656
GF+I+ G+ V ++ K L GD +I+ N + N+ HG+
Sbjct: 3 ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQ 62
Query: 657 VVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKTPTEMYTRPKEIVARRPKTPLVDTR 716
V +LK Q +E I+ + ++ + + + TP
Sbjct: 63 AVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTSLLI 122
Query: 717 SRSKTPTE 724
S +
Sbjct: 123 SWDASYYG 130
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 69.0 bits (169), Expect = 1e-12
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 139 DNLYLRTVPVTTRTPRDGELNGVDYTFLSI-EEFKQLEKSGCLLESGLYEGNHYGTPK-P 196
+ + VP TTR R+ E++G DY F+S E+ ++ ++ +E+G Y + YGT
Sbjct: 127 PDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQS 186
Query: 197 VKE 199
V+E
Sbjct: 187 VRE 189
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain,
UBL-conjugation pathway, structural GE structural
genomics consortium, SGC, coiled coil; HET: MSE; 1.80A
{Homo sapiens}
Length = 109
Score = 64.3 bits (156), Expect = 1e-12
Identities = 16/72 (22%), Positives = 32/72 (44%)
Query: 256 SSDYELNDNNGRESPPSYYNPYIGQGLKEIDPLLELDLGPLPPRWEKAYTEKGEVYFIDH 315
S+ + R ++ + L + LP WE ++G+ +F+DH
Sbjct: 33 STCLKHMILKVRRDARNFERYQHNRDLVNFINMFADTRLELPRGWEIKTDQQGKSFFVDH 92
Query: 316 NSSTSSWLDPRL 327
NS ++++DPR+
Sbjct: 93 NSRATTFIDPRI 104
Score = 55.8 bits (134), Expect = 1e-09
Identities = 12/62 (19%), Positives = 26/62 (41%)
Query: 315 HNSSTSSWLDPRLCKFQKKLEDCSDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQ 374
+ + R + + ELP GWE D ++++DH ++ T + +P +
Sbjct: 46 DARNFERYQHNRDLVNFINMFADTRLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRIP 105
Query: 375 AK 376
+
Sbjct: 106 LQ 107
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.7 bits (172), Expect = 3e-12
Identities = 83/635 (13%), Positives = 181/635 (28%), Gaps = 189/635 (29%)
Query: 283 KEIDPLLELDLGPLPPRWEKAY------TEKGE--VY-FIDHNSSTS-SWLDPRLCKFQK 332
+EID ++ K E V F++ + +L + +
Sbjct: 49 EEIDHIIMS-----KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL---MSPIKT 100
Query: 333 KLEDCSDDELPYGWERI----DDPAYGTYYIDHVNKQTQYENPVLQAK-------HRDQG 381
+ S Y +R D+ + Y + + + +L+ + G
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 382 AGPS--------------EMDDNEH----KVKDSPGKRIAPQARNTLVST-----SNRSN 418
+G + +MD K +SP + L+ ++RS+
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML--QKLLYQIDPNWTSRSD 218
Query: 419 NDENYFFTLN-----PDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGP 473
+ N ++ L+ + + L L ++ + +Q
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPY---ENCL--L---VL--LN-----VQNAKAW---- 259
Query: 474 AALEGHLQTGDVLVYVNDKCV------LGYTHHDMVSVFQSISPGETVQL---------- 517
A + L+ K V TH + +++P E L
Sbjct: 260 NAFNLSCKI---LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 518 ----EVCRGYPLPFDPNDPNTEVVTTVAVNAPDLDNGSDRHLYMSANDFTDQSVKSMPDL 573
EV P ++ +A + D D +++ + T S+ L
Sbjct: 317 DLPREVLTTNPR----------RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 574 YTSEKMVKLERPSSTDL-ILESDSEYLTIPIVKGAMGFGFTIA---DSSHGQKVKKILDR 629
+E R L + + IP + ++ V ++++
Sbjct: 367 EPAE-----YRKMFDRLSVFPPSAH---IPTI--------LLSLIWFDVIKSDVMVVVNK 410
Query: 630 QRCKNLAEGD---ILIEINNLNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSP 686
+L E I I ++ + E L H+
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-------------------HRSI-- 449
Query: 687 PFRSKTPTEMYTRPKEIVARRPKTPLVDTRSRSKTPTENYSEYYINKELKDLDINKNIWD 746
+ Y PK D+ + Y +I LK+++ +
Sbjct: 450 -------VDHYNIPKT----------FDSDDLIPPYLDQYFYSHIGHHLKNIEHPER-MT 491
Query: 747 PQTT---NPGFMQS--NYSDSMSYCGGY--NVYQVNKRKESTSFEHEQPLPSNDMRYIPP 799
+ F++ + + G N Q K + +++ P + R +
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND---PKYE-RLV-- 545
Query: 800 DNLG--LPRVRPTNIKSVEYSDVMVITLLRQENGF 832
+ + LP++ I S +Y+D++ I L+ ++
Sbjct: 546 NAILDFLPKIEENLICS-KYTDLLRIALMAEDEAI 579
Score = 58.7 bits (141), Expect = 1e-08
Identities = 68/442 (15%), Positives = 129/442 (29%), Gaps = 131/442 (29%)
Query: 497 YTHHDMVSVFQS------------------ISPGETVQL-----EVCRGYPL-------- 525
Y + D++SVF+ +S E + V L
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 526 -----PF--DPNDPNTEVVTTVAVNAPDLDNGSDRHLYMSANDFTDQSVKSMPDLYTS-- 576
F + N + + + + +Y+ D + S
Sbjct: 76 EEMVQKFVEEVLRINYKFLMS-PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 577 EKMVKLERPSSTDLILE-SDSEYLTIPIVKGAMGFGFTI--ADSSHGQKVKKILDRQ--- 630
+ +KL + +LE ++ + ++ G +G G T D KV+ +D +
Sbjct: 135 QPYLKLRQ-----ALLELRPAKNV---LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 631 ----RCKNLAEGDILIEINNLNVRNMCHGEV-----------VQVLKDCQRNLEANIIVQ 675
C + +L + L + + + ++ R L + +
Sbjct: 187 LNLKNCNS--PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 676 RSRL-----QHKKTSPPFRSKTPTEMYTRPKEIV----ARRPKTPLVDTRSRSKTPTENY 726
L Q+ K F + TR K++ A +D S + TP E
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 727 S--EYYINKELKDLDINKNIWDP---QTTNP------GFMQSNYSDSMSYCGGYNVYQVN 775
S Y++ +DL P TTNP + + + +
Sbjct: 305 SLLLKYLDCRPQDL--------PREVLTTNPRRLSIIAESIRDGLATWDN---WKHVNCD 353
Query: 776 KRKE--STSFEHEQPLPSNDMR--Y----IPPDNLGLPRVRPTNIKSV-----EYSDVMV 822
K +S L + R + + P + + PT + S+ SDVMV
Sbjct: 354 KLTTIIESSLNV---LEPAEYRKMFDRLSVFPPSAHI----PTILLSLIWFDVIKSDVMV 406
Query: 823 IT--------LLRQENGFGFRI 836
+ + +Q I
Sbjct: 407 VVNKLHKYSLVEKQPKESTISI 428
Score = 54.5 bits (130), Expect = 2e-07
Identities = 76/542 (14%), Positives = 147/542 (27%), Gaps = 195/542 (35%)
Query: 54 INKEKVKGAEKYLEEKAIILEIQ-------------GQKV-AGYTRRDT---------IA 90
K V + YL+ + +LE++ G+ A I
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 91 WLN--HCCRSGKTL----TLRTVSSAYVTTDLRQFLNTRFPKGSVDHDLQNIIRDNLY-- 142
WLN +C L L T+ N + S+ +L+ +++ Y
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 143 ----LRTV--P-------------VTTRTPRDGE----LNGVDYTFLSIEEFKQ-LEKSG 178
L V +TTR + L+ T +S++ L
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTR---FKQVTDFLSAATTTHISLDHHSMTLTPD- 301
Query: 179 CLLES-GLYEGNHYGTPKPVKEPYVSLP-QNVNLLPGAHPSSEGKRKRNRSNVEAMASKS 236
E L K + LP + + P ++ ++S
Sbjct: 302 ---EVKSLLL-------KYLDCRPQDLPREVLTTNPRRL---------------SIIAES 336
Query: 237 IEPDMKTNGFDNKTVNMGNSSDYELNDNNGRESPPSYYNPYIGQGLKEIDPLLELDLGPL 296
I + T +DN ++ + N ++ ++E L L
Sbjct: 337 IRDGLAT--WDN----------WK------------HVN------CDKLTTIIESSLNVL 366
Query: 297 PPRWEKAYTEKGEVYFIDHNSSTSS-----WLDPR-------LCKFQKK-LEDCSDDELP 343
P + ++ V F + W D + K K L +
Sbjct: 367 EPAEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK------ 419
Query: 344 YGWERIDDPAYGTYYI----------------------DHVNKQTQYENPVLQAKHRDQ- 380
P T I DH N +++ L + DQ
Sbjct: 420 -------QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 381 ----------GAGPSEMDDN-----------EHKVKDSPGKRIAPQARNTLVSTSNRSNN 419
E E K++ A A ++++T +
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS---TAWNASGSILNTLQQLKF 529
Query: 420 DENYFFTLNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGH 479
+ Y ++ ER+ ++++ L + ++ + + L+I + + E H
Sbjct: 530 YKPYIC---DNDPKYERLVNAILDFLPKIEENLICSKYT--DLLRIALMAEDEAIFEEAH 584
Query: 480 LQ 481
Q
Sbjct: 585 KQ 586
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three
stranded antiparallel beta sheet, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 61.1 bits (149), Expect = 3e-12
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 294 GPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRL 327
LPP WE+ + G VY++DH ++W P
Sbjct: 6 SGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSG 39
Score = 58.8 bits (143), Expect = 2e-11
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 338 SDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQA 375
LP GWE+ D YY+DHV K+T ++ P +
Sbjct: 4 GSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGPS 41
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein
binding; NMR {Homo sapiens}
Length = 92
Score = 62.8 bits (152), Expect = 3e-12
Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 5/78 (6%)
Query: 294 GPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRLCKFQKKLEDCSDDELPYGWERIDDPA 353
W + + G Y+ + + S+W P W+ +
Sbjct: 10 SGAKSMWTEHKSPDGRTYYYNTETKQSTWEKP-----DDLKTPAEQLLSKCPWKEYKSDS 64
Query: 354 YGTYYIDHVNKQTQYENP 371
TYY + K++++ P
Sbjct: 65 GKTYYYNSQTKESRWAKP 82
Score = 42.0 bits (98), Expect = 6e-05
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 260 ELNDNNGRESPPSYYNPYIGQGL--KEIDPLLELDLGPLPPRWEKAYTEKGEVYFIDHNS 317
E +GR YYN Q K D + W++ ++ G+ Y+ + +
Sbjct: 18 EHKSPDGR---TYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKTYYYNSQT 74
Query: 318 STSSWLDPRLCKFQKKLE 335
S W P+ + + LE
Sbjct: 75 KESRWAKPKELEDLEGLE 92
Score = 35.0 bits (80), Expect = 0.017
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 338 SDDELPYGWERIDDPAYGTYYIDHVNKQTQYENP---VLQAKHRDQGAGPSEMDDNEHKV 394
+ W P TYY + KQ+ +E P A+ E + K
Sbjct: 8 TASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKT 67
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.5 bits (167), Expect = 1e-11
Identities = 94/577 (16%), Positives = 173/577 (29%), Gaps = 216/577 (37%)
Query: 313 IDHNSSTSSWLDPRLC---------KFQKKLED-----CSDDE-----------LPYGWE 347
+ H S L P +F K L + +DDE L Y
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 348 RIDDPAYGTYYIDHVNKQ--TQYENPVLQAK--HRDQGAGPSEMDDNEHKVKD------- 396
++ G + D V T++EN L+ H E D K K+
Sbjct: 71 LVEPSKVGQF--DQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 397 ---SPGKRIAPQARNTLVSTSNRSN-----------NDENYFFTLNPDEL---------- 432
+ ++ + L N N ++YF +EL
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF-----EELRDLYQTYHVL 183
Query: 433 IGERIHSS------LVKS------LRGLGFTIVGGDDSKEEFLQIKSVVPNG------PA 474
+G+ I S L+++ + G I+ E+L+ S P+ P
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL-------EWLENPSNTPDKDYLLSIPI 236
Query: 475 A--LEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDP 532
+ L G +Q +V +LG+T ++ S + +
Sbjct: 237 SCPLIGVIQLAHYVVTAK---LLGFTPGELRSYLKGAT--------GH------------ 273
Query: 533 NTEVVTTVAVNAPDLDNGSDRHLYMSANDFTDQSVKSM--------------PDLYTSEK 578
+ +VT VA+ D S F K++ P+
Sbjct: 274 SQGLVTAVAIAETD-----------SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 579 MVKLERPSSTDLILESDSEYLTIPIVKGAMGFGFTIADSSHGQKVKKILDRQRCKNLAEG 638
+++ +S +P M +I++ + Q V+ ++ + +L G
Sbjct: 323 ILE-----------DSLENNEGVP---SPM---LSISNLTQEQ-VQDYVN-KTNSHLPAG 363
Query: 639 DILIEINNLN-VRNMCHGEVV-------QVLKDCQRNLEANIIVQRSRLQHKK------- 683
+EI+ +N +N+ VV L R +A + +SR+ +
Sbjct: 364 K-QVEISLVNGAKNL----VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 684 ----TSPPFRS--------KTPTEMYTRPKEIVARRPKTPLVDTRS----RSKTPTENYS 727
+ PF S ++ A+ + P+ DT R + +
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS---- 474
Query: 728 EYYINKELKDLDINKNI-WDPQTTN----------PG 753
I++ + D I + W TT PG
Sbjct: 475 ---ISERIVDCIIRLPVKW-ETTTQFKATHILDFGPG 507
Score = 62.0 bits (150), Expect = 1e-09
Identities = 97/640 (15%), Positives = 174/640 (27%), Gaps = 273/640 (42%)
Query: 127 GSVDHDL-----------QNIIRDNLYLRTVPVTTRTPRDG-------ELNGVDYTFLS- 167
GS++H L Q +++ + + +P T EL G FL
Sbjct: 14 GSLEHVLLVPTASFFIASQ--LQEQ-FNKILPEPTEGFAADDEPTTPAELVG---KFLGY 67
Query: 168 ----IEEFKQLEKSGCLL------ESGLYEGN--HYGTPKPVKEPYVSLPQNVNLLPGAH 215
+E K + L E+ EGN H +L L +
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH------------AL---AAKLLQEN 112
Query: 216 PSSEGKRKRN-RSNVEAMASKSIEPDMKTNG---F---DNKTVNM-------GNSSDY-- 259
++ K K ++ + A + P K + F + GN+ DY
Sbjct: 113 DTTLVKTKELIKNYITARIM-AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 260 ELNDNNGRESPPSY--YNPYIGQGLKEIDPLLELDLGPLPPRWEKAYTEKGEVYFIDHNS 317
EL R+ Y Y+ +G +K L +L EK +T +G ++
Sbjct: 172 EL-----RDL---YQTYHVLVGDLIKFSAETLS-ELIRTTLDAEKVFT-QG----LN--- 214
Query: 318 STSSWLDPRLCKFQKKLEDCSDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQAKH 377
WL+ + P Y+ + P+
Sbjct: 215 -ILEWLE-------------NPSNTP-----------DKDYLLSI--------PI----- 236
Query: 378 RDQGAGPSEMDDNEHKVKDS-PGKRIAPQARNTLVSTSNRSNNDENYFFT-----LNPDE 431
S P ++ + +Y T P E
Sbjct: 237 -------------------SCPL--------IGVIQLA-------HYVVTAKLLGFTPGE 262
Query: 432 LIGERIHSSLVKSLRGLGFTIVGGD----------DSKEEFLQIKSVVPNGPAALEGHLQ 481
L L+G T DS E F + A+
Sbjct: 263 ---------LRSYLKGA--TGHSQGLVTAVAIAETDSWESFFV------SVRKAIT---- 301
Query: 482 TGDVLVYVNDKCVLGYTHHDM-VSVFQ-SISPGETV---QLEVCRGYPLP--------FD 528
VL ++ +C Y + + S+ + S+ E V L +
Sbjct: 302 ---VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML-SISNLTQEQVQDYVNKTN 357
Query: 529 PNDPNTEVVTTVAVNAPDLDN----GSDRHLY--------MSANDFTDQSVKSMPDLYTS 576
+ P + V VN N G + LY A DQS +P ++
Sbjct: 358 SHLPAGKQVEISLVNGA--KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS--RIP--FSE 411
Query: 577 EKMVKLERPSSTDLILESDSEYLTI--PIVKGAMGFGFTIADSSHGQKVKKILDRQRCKN 634
K L+ + +L + P F S ++++
Sbjct: 412 RK-------------LKFSNRFLPVASP-------F-----HSHLLVPASDLINKD---- 442
Query: 635 LAEGDILIEINNLNV--------RNMCH--GEVVQVLKDC 664
L + ++ ++ + ++ G + + + DC
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Score = 57.4 bits (138), Expect = 3e-08
Identities = 90/608 (14%), Positives = 170/608 (27%), Gaps = 252/608 (41%)
Query: 547 LDNGSDRH-------LYMSANDFTDQSVKSMPDLYTSEKMVKLERPSSTDLILESDSEYL 599
L +GS H + A+ +Q K +P+ +E + P++ E ++L
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPE--PTEGFAADDEPTT---PAELVGKFL 65
Query: 600 TIPIVKGAMGFGFT---IADSSHGQK---VKKILDRQRCKNLAEGDILIEINNLNVRNMC 653
G+ + S GQ + L L DI
Sbjct: 66 -----------GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI------------- 101
Query: 654 HGEVVQVLKDCQ----------RN-LEANIIVQRSRLQHKKTSPPFRS----KTPT---- 694
H ++L++ +N + A I+ +R K S FR+
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRP-FDKKSNSALFRAVGEGNAQLVAIF 160
Query: 695 --------------EMYTRPKEIVARRPKTPLVDT-----RSRSKTPTENYSEYYINKEL 735
++Y +V L+ +T + +
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVG-----DLIKFSAETLSELIRTTLDAEKVFT----- 210
Query: 736 KDLDINKNIW--DPQTTNP---------------GFMQ-SNYSDSMSYC--GGYNVYQVN 775
+ L+I + W +P T P G +Q ++Y + G+ ++
Sbjct: 211 QGLNILE--WLENPSNT-PDKDYLLSIPISCPLIGVIQLAHY---VVTAKLLGFTPGELR 264
Query: 776 KRKEST--------------------SFE-----------------HEQ-P---LPSNDM 794
+ SF +E P LP + +
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 795 RYIPPDNLGLP----RVRPTNIKSVEYSDVMVITLLRQENGFGFRIVGGTEEGSQVSIGH 850
+N G+P + + V+ + + N G QV I
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQ-------DYVNKTNSHL-------PAGKQVEI-- 368
Query: 851 IVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKA-SVYGRVTLGIRRKVMPP 909
S++N + + VV G S+YG + L +R+ P
Sbjct: 369 -------------------------SLVNGAKNLVVS--GPPQSLYG-LNLTLRKAKAPS 400
Query: 910 AETTSMMLGYPYD---VTITRRENEGFGFVIISS------LNKAGSTIGRIIEDSPAD-- 958
S + P+ + + R F+ ++S L A I +D +
Sbjct: 401 GLDQSRI---PFSERKLKFSNR------FLPVASPFHSHLLVPASD---LINKDLVKNNV 448
Query: 959 --RSGELHLGDHILAVNHV----DIMSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASST 1012
+ ++ + V D+ L G I I D C+ P+ + +
Sbjct: 449 SFNAKDIQ-----IPVYDTFDGSDLRVL-SGSISERIVD---CIIR---LPVKWETTTQF 496
Query: 1013 TSVSAASH 1020
A+H
Sbjct: 497 K----ATH 500
Score = 45.4 bits (107), Expect = 1e-04
Identities = 61/369 (16%), Positives = 99/369 (26%), Gaps = 143/369 (38%)
Query: 346 WERIDD---PAYGTYYIDHVNKQTQYENPVLQAKHRDQGAGPSEMDDNEHKVKDSPGKRI 402
W R D+ YG + I + NPV H G GKRI
Sbjct: 1646 WNRADNHFKDTYG-FSILDIVI----NNPVNLTIHFG-GEK---------------GKRI 1684
Query: 403 APQARNTLVSTSNRSNNDENY---FFTLNPD-ELIGERIHSSLVKSLRGLGFTIVGGDD- 457
ENY F D +L E+I + + F +
Sbjct: 1685 R-----------------ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF---RSEKG 1724
Query: 458 --SKEEFLQIKSVVPNGPA------ALEGHLQT-GDVLVYVNDKCVLGYTHHDMVSVFQS 508
S +F Q PA A L++ G + D G H S+
Sbjct: 1725 LLSATQFTQ--------PALTLMEKAAFEDLKSKG---LIPADATFAG--H----SL--- 1764
Query: 509 ISPGETVQLEVCRGYPLPFDPNDPNTEVVTTVAVNAPDLDNGSDRHLYMSANDFTDQSVK 568
GE L + + +V V R + M D+ +
Sbjct: 1765 ---GEYAAL-ASLADVMSIE------SLVEVVFY----------RGMTMQVAVPRDELGR 1804
Query: 569 SMPDLYTSEKMVKLERPSSTDLILESDSEYLTIPIVKGAMGFGFTIADSSHGQKVKKILD 628
S M+ + P G + F+ ++ +++
Sbjct: 1805 SNYG------MIAI-NP--------------------GRVAASFSQEA------LQYVVE 1831
Query: 629 RQRCKNLAEGDILIEINNLNVRNM---CHGEV--VQVLKDCQRNLEA-NIIVQRSRLQHK 682
R L+EI N NV N G++ + + + ++ I + LQ
Sbjct: 1832 R----VGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDI--IELQKS 1885
Query: 683 KTSPPFRSK 691
+
Sbjct: 1886 LSLEEVEGH 1894
Score = 37.7 bits (87), Expect = 0.026
Identities = 35/218 (16%), Positives = 68/218 (31%), Gaps = 67/218 (30%)
Query: 931 EGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLG---DHILAVNHVDIM--SLHHGEI 985
+ +GF I+ I+ ++P + +H G + N+ ++ ++ G++
Sbjct: 1655 DTYGFSIL-----------DIVINNP--VNLTIHFGGEKGKRIRENYSAMIFETIVDGKL 1701
Query: 986 V--NLIKDSGYCVTLTIGAPISGDD-----------ASSTTSVSAASHREYEEGGEHDEQ 1032
+ K+ T + A + +A + +G +
Sbjct: 1702 KTEKIFKEINEHSTSYT---FRSEKGLLSATQFTQPALTLMEKAAFEDLK-SKGLIPADA 1757
Query: 1033 YHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGD--EIVEINGIN 1090
A G S+ G E+ AL A+L + + E+V G
Sbjct: 1758 TFA----------GHSL--G-EYA--AL----------ASLADVMSIESLVEVVFYRG-- 1790
Query: 1091 TKNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAPTDNAA 1128
MT A+ G S ++ G V A A
Sbjct: 1791 ---MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Score = 35.4 bits (81), Expect = 0.13
Identities = 33/179 (18%), Positives = 58/179 (32%), Gaps = 53/179 (29%)
Query: 978 MSLHHGEIVNLIKDSGYCVTLTIGAPISGDDASSTTSVSAAS-HRE---------YEEGG 1027
++L HG + L + T S AS +E E
Sbjct: 9 LTLSHGSLE---------HVLLV----------PTASFFIASQLQEQFNKILPEPTEGFA 49
Query: 1028 EHDEQYHAIEL-SRGTRGF-GFSIRGGREFQNMALF--VLQIAENGPAALDGHLKVGDEI 1083
DE EL + F G+ + E + F VL + + +L+ G++I
Sbjct: 50 ADDEPTTPAELVGK----FLGY-VSSLVEPSKVGQFDQVLNLCLT--EFENCYLE-GNDI 101
Query: 1084 ----VEINGINTKNMTHAEAIEIIRN----GDSTVRLLIKRGGSVV--APTDNAAGIYS 1132
++ N T + E+I+N R K+ S + A + A + +
Sbjct: 102 HALAAKLLQENDT--TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 63.7 bits (154), Expect = 1e-10
Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 8/116 (6%)
Query: 1027 GEHD---EQYHAIELSRGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEI 1083
G H ++ +G G + GG + + +FV + E+ PAA +G L+ GD+I
Sbjct: 1 GSHMILRPSMKLVKFRKGD-SVGLRLAGGND---VGIFVAGVLEDSPAAKEG-LEEGDQI 55
Query: 1084 VEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSVVAPTDNAAGIYSSDTSSNY 1139
+ +N ++ N+ EA+ + + + I
Sbjct: 56 LRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRT 111
Score = 63.3 bits (153), Expect = 2e-10
Identities = 21/132 (15%), Positives = 49/132 (37%), Gaps = 5/132 (3%)
Query: 430 DELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYV 489
++ + + +G + GG+D + + V+ + PAA EG L+ GD ++ V
Sbjct: 3 HMILRPSMKLVKFRKGDSVGLRLAGGNDVG---IFVAGVLEDSPAAKEG-LEEGDQILRV 58
Query: 490 NDKCVLGYTHHDMVSVFQSISPGETVQLEVCRGYPLPFDPNDPNTEVVTTVAVNAPDLDN 549
N+ + V + GE V + + + + + + + + +
Sbjct: 59 NNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHF-EYEK 117
Query: 550 GSDRHLYMSAND 561
S L + +
Sbjct: 118 ESPYGLSFNKGE 129
Score = 59.1 bits (142), Expect = 4e-09
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 817 YSDVMVITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLS 876
M + R+ + G R+ GG + G V+ ++ A +G L GD+I+ V+N+
Sbjct: 6 LRPSMKLVKFRKGDSVGLRLAGGNDVGIFVA--GVLEDSPAAKEG-LEEGDQILRVNNVD 62
Query: 877 VLNSSHHHVVELMGKASVYGRVTLGIRRKVMPPAE 911
N V + VT+ ++K
Sbjct: 63 FTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRR 97
Score = 58.3 bits (140), Expect = 6e-09
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 924 TITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHG 983
+ R+ + G + N G + ++EDSPA + G L GD IL VN+VD ++
Sbjct: 12 LVKFRKGDSVGLRLAGG-NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIRE 69
Query: 984 EIVNLIKDSGYCVTLTI 1000
E V + D +TI
Sbjct: 70 EAVLFLLDLPKGEEVTI 86
Score = 42.9 bits (100), Expect = 4e-04
Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 12/114 (10%)
Query: 593 ESDSEYLTIPIVKGAMGFGFTIA-DSSHGQKVKKIL-----DRQRCKNLAEGDILIEINN 646
+ + + G +A + G V +L ++ L EGD ++ +NN
Sbjct: 4 MILRPSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKE---GLEEGDQILRVNN 60
Query: 647 LNVRNMCHGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKTPTEMYTRP 700
++ N+ E V L D + E I+ Q+ + +++ S Y R
Sbjct: 61 VDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRR---IVESDVGDSFYIRT 111
Score = 31.0 bits (69), Expect = 2.8
Identities = 19/121 (15%), Positives = 42/121 (34%), Gaps = 8/121 (6%)
Query: 15 GTHWQDKETPVTLTVPPDGSLNFSVGGGSDSGEFAYVTNINKEKVKGAEKY-LEEKAIIL 73
G+H + + + S+ + GG+D G +V + ++ A K LEE IL
Sbjct: 1 GSHMILRPSMKLVKFRKGDSVGLRLAGGNDVG--IFVAGVLEDSP--AAKEGLEEGDQIL 56
Query: 74 EIQGQKVAGYTRRDTIAWLNHCCRSGKTLTLRTVSS--AYVTTDLRQFLNTRFPKGSVDH 131
+ R + G+ +T+ Y ++ + + ++
Sbjct: 57 RVNNVDFTNIIREE-AVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEY 115
Query: 132 D 132
+
Sbjct: 116 E 116
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A
{Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 60.8 bits (148), Expect = 1e-09
Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 29/186 (15%)
Query: 942 NKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDS--GYCVTLT 999
+ G+ + ++ +SPA+ +G L GD I +N I ++ I G V +
Sbjct: 280 DFQGALVSQVNPNSPAELAG-LKAGDIITQINDTKITQA--TQVKTTISLLRVGSTVKII 336
Query: 1000 I---GAPISGD---DASSTTSVSAASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGR 1053
+ P++ + S+ + G G
Sbjct: 337 VERDNKPLTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQESPPHGNVIG--------- 387
Query: 1054 EFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLL 1113
+ V+ +EN G ++ GD I+ N ++ I + + +
Sbjct: 388 ------VQVVGASENSAGWRAG-IRPGDIIISANKKPVTDV--KSLQTIAQEKKKELLVQ 438
Query: 1114 IKRGGS 1119
+ RG
Sbjct: 439 VLRGPG 444
Score = 48.5 bits (116), Expect = 1e-05
Identities = 26/162 (16%), Positives = 58/162 (35%), Gaps = 17/162 (10%)
Query: 848 IGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVM 907
+ + P A+L G L GD I +++ + ++ V + V V + + R
Sbjct: 286 VSQVNPNSPAELAG-LKAGDIITQINDTKITQATQ--VKTTISLLRVGSTVKIIVERDNK 342
Query: 908 PPAETTSMMLGYPYD--VTITRRENEGFGFVI-------ISSLNKAGSTIGRIIEDSPAD 958
P T S ++ + +G + N G + E+S
Sbjct: 343 P--LTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQESPPHGNVIGVQVVGASENSAGW 400
Query: 959 RSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
R+G + GD I++ N + + + + ++ + + +
Sbjct: 401 RAG-IRPGDIIISANKKPVTDV--KSLQTIAQEKKKELLVQV 439
Score = 43.5 bits (103), Expect = 4e-04
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
+ V PN PA L G L+ GD++ +ND + + + + G TV++ V R
Sbjct: 286 VSQVNPNSPAELAG-LKAGDIITQINDTKI--TQATQVKTTISLLRVGSTVKIIVERD 340
Score = 31.9 bits (73), Expect = 1.1
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 463 LQIKSVVPNGPAALEGHLQTGDVLVYVNDKCV 494
+Q+ N G ++ GD+++ N K V
Sbjct: 388 VQVVGASENSAGWRAG-IRPGDIIISANKKPV 418
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 60.0 bits (146), Expect = 2e-09
Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 32/181 (17%)
Query: 945 GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDS--GYCVTLTI-- 1000
G+ + +++ +S A ++G + GD I ++N I S + + G +TL +
Sbjct: 287 GAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLR 343
Query: 1001 -GAPISGDDASSTTSVSAASHREYEEGGEHDEQYHAI-ELSRGTRGFGFSIRGGREFQNM 1058
G + ++ + + E+S + G
Sbjct: 344 DGKQV-------NVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQG------------ 384
Query: 1059 ALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGG 1118
+ V + PAA G LK GD I+ N KN+ AE +++ + S + L I+RG
Sbjct: 385 -VVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLALNIQRGD 440
Query: 1119 S 1119
S
Sbjct: 441 S 441
Score = 50.4 bits (121), Expect = 2e-06
Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 10/155 (6%)
Query: 848 IGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVM 907
+ ++P +A G + GD I S++ + + + + +G V ++TLG+ R
Sbjct: 290 VSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFAA--LRAQVGTMPVGSKLTLGLLRDGK 346
Query: 908 PPAETTSMMLG-YPYDVTITRRENEGFGFVIISSLNKA-GSTIGRIIEDSPADRSGELHL 965
++ L + + G +S+ K G + + +PA + G L
Sbjct: 347 Q--VNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIG-LKK 403
Query: 966 GDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
GD I+ N + ++ E+ ++ + L I
Sbjct: 404 GDVIIGANQQAVKNI--AELRKVLDSKPSVLALNI 436
Score = 42.7 bits (101), Expect = 6e-04
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
+ V+PN AA G ++ GDV+ +N K + + + + ++ G + L + R
Sbjct: 290 VSQVLPNSSAAKAG-IKAGDVITSLNGKPI--SSFAALRAQVGTMPVGSKLTLGLLRD 344
Score = 36.9 bits (86), Expect = 0.041
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 433 IGERIHSSLVKSLRGLGFTIVG-GDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVND 491
+ + + + S G + K++ + + +V PAA G L+ GDV++ N
Sbjct: 354 LQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQ 412
Query: 492 KCV 494
+ V
Sbjct: 413 QAV 415
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 60.0 bits (146), Expect = 2e-09
Identities = 33/180 (18%), Positives = 70/180 (38%), Gaps = 27/180 (15%)
Query: 945 GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDS--GYCVTLTI-- 1000
G+ + ++ S + ++G + GD I ++N + S E+ + I + G V L +
Sbjct: 264 GAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLR 320
Query: 1001 -GAPISGDDASSTTSVSAASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQNMA 1059
G P+ V+ + E ++ G S ++
Sbjct: 321 NGKPL-------EVEVTLDTSTSSSASAE--------MITPALEGATLSDGQLKDGGK-G 364
Query: 1060 LFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGS 1119
+ + ++ + PAA G L+ D I+ +N ++ AE +++ + + L I RG
Sbjct: 365 IKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIVRGNE 421
Score = 49.6 bits (119), Expect = 4e-06
Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 13/158 (8%)
Query: 848 IGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVM 907
+ ++PG + G + GD I S++ + + + + + +V LG+ R
Sbjct: 267 VSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAE--LRSRIATTEPGTKVKLGLLRNGK 323
Query: 908 PPAETTSMMLG-YPYDVTITRRENEGFGFVIISSLNKAGSTIG----RIIEDSPADRSGE 962
P + L +S G +++ SPA ++G
Sbjct: 324 P--LEVEVTLDTSTSSSASAEMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAG- 380
Query: 963 LHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
L D I+ VN + S+ E+ ++ + L I
Sbjct: 381 LQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQI 416
Score = 42.3 bits (100), Expect = 7e-04
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
+ V+P +A G ++ GD++ +N K + + ++ S + PG V+L + R
Sbjct: 267 VSEVLPGSGSAKAG-VKAGDIITSLNGKPL--NSFAELRSRIATTEPGTKVKLGLLRN 321
Score = 33.4 bits (77), Expect = 0.43
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 439 SSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYT 498
+ +L G + D + ++I VV PAA G LQ DV++ VN V
Sbjct: 342 EMITPALEGATLSDGQLKDGGKG-IKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRV---- 395
Query: 499 HHDMVSVFQSI--SPGETVQLEVCRG 522
+ ++ + + + + L++ RG
Sbjct: 396 --NSIAEMRKVLAAKPAIIALQIVRG 419
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 40
Score = 52.7 bits (127), Expect = 2e-09
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 294 GPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPR 326
LPP W+ + +G Y+++ ++ ++W P
Sbjct: 6 SGLPPGWQSYLSPQGRRYYVNTTTNETTWERPS 38
Score = 45.4 bits (108), Expect = 1e-06
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 338 SDDELPYGWERIDDPAYGTYYIDHVNKQTQYENP 371
LP GW+ P YY++ +T +E P
Sbjct: 4 GSSGLPPGWQSYLSPQGRRYYVNTTTNETTWERP 37
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 59.9 bits (144), Expect = 3e-09
Identities = 31/225 (13%), Positives = 73/225 (32%), Gaps = 12/225 (5%)
Query: 447 GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVF 506
+G + GG+D + + V+ + PAA EG L+ GD ++ VN+ + V
Sbjct: 12 SVGLRLAGGNDVG---IFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFL 67
Query: 507 QSISPGETVQLEVCRGYPLPFDPNDPNTEVVTTVAVNAPDLDNGSDRHLYMSANDF---T 563
+ GE V + + + + + + + + + S L + +
Sbjct: 68 LDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTH-FEYEKESPYGLSFNKGEVFRVV 126
Query: 564 DQSVKSMPDLYTSEKMVKLERPSSTDLILESDSEYLTIPIVKGAMGFGFTIADSSHGQKV 623
D + + ++ K + +I ++ + T
Sbjct: 127 DTLYNGKLGSWLAIRIGKNHKEVERGIIP---NKNRAEQLASVQYTLPKTAGGDRADFWR 183
Query: 624 KKILDRQRCKNLAEGDILIEINNLNVRNMCHGEVVQVLKDCQRNL 668
+ L + +NL + + + + + VV R +
Sbjct: 184 FRGLRSSK-RNLRKSREDLSAQPVQTKFPAYERVVLREAGFLRPV 227
Score = 58.8 bits (141), Expect = 6e-09
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Query: 1040 RGTRGFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEA 1099
R G + GG + + +FV + E+ PAA +G L+ GD+I+ +N ++ N+ EA
Sbjct: 8 RKGDSVGLRLAGGND---VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEA 63
Query: 1100 IEIIRNGDSTVRLLIKRGGSVVAPTDNAAGIYSSDTSSNY 1139
+ + + + I
Sbjct: 64 VLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRT 103
Score = 56.1 bits (134), Expect = 4e-08
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 823 ITLLRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSH 882
+ R+ + G R+ GG + G V+ ++ A +G L GD+I+ V+N+ N
Sbjct: 4 LVKFRKGDSVGLRLAGGNDVGIFVA--GVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIR 60
Query: 883 HHVVELMGKASVYGRVTLGIRRKVMPPAETTSMM 916
V + VT+ ++K
Sbjct: 61 EEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESD 94
Score = 53.8 bits (128), Expect = 2e-07
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 924 TITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHG 983
+ R+ + G + N G + ++EDSPA + G L GD IL VN+VD ++
Sbjct: 4 LVKFRKGDSVGLRLAGG-NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIRE 61
Query: 984 EIVNLIKDSGYCVTLTI 1000
E V + D +TI
Sbjct: 62 EAVLFLLDLPKGEEVTI 78
Score = 38.0 bits (87), Expect = 0.019
Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 600 TIPIVKGAMGFGFTIA-DSSHGQKVKKIL-----DRQRCKNLAEGDILIEINNLNVRNMC 653
+ KG G +A + G V +L ++ L EGD ++ +NN++ N+
Sbjct: 4 LVKFRKGD-SVGLRLAGGNDVGIFVAGVLEDSPAAKE---GLEEGDQILRVNNVDFTNII 59
Query: 654 HGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPPFRSKT 692
E V L D + E I+ Q+ + +++ +
Sbjct: 60 REEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDS 98
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 118
Score = 54.4 bits (130), Expect = 6e-09
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 1041 GTRGFGFSIRGGREFQNMALFVLQIAENGPAALD-GHLKVGDEIVEINGINTKNMTHAEA 1099
RGF ++ + V ++ + + + GD I+EING + + E
Sbjct: 27 CRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEV 86
Query: 1100 IEIIRNGDSTVRLLIKR 1116
+ I+ T++LLI+
Sbjct: 87 EDAIKQTSQTLQLLIEH 103
Score = 46.0 bits (108), Expect = 5e-06
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 923 VTITRRENEGFGF-VIISSLNKAGSTIGRIIEDSP----ADRSGELHLGDHILAVNHVDI 977
+++ GF V + S + +T ++ E + + +H GD IL +N +
Sbjct: 19 ISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPV 78
Query: 978 MSLHHGEIVNLIKDSGYCVTLTI 1000
+L E+ + IK + + L I
Sbjct: 79 RTLRVEEVEDAIKQTSQTLQLLI 101
Score = 32.5 bits (73), Expect = 0.22
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 602 PIVKGAMGFGFTIADS----SHGQKVKKI----LDRQRCKNLAEGDILIEINNLNVRNMC 653
+ GF T+ + + +VK++ + + GD ++EIN VR +
Sbjct: 23 ATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLR 82
Query: 654 HGEVVQVLKDCQRNLEANIIVQRSRLQHKKTSPP 687
EV +K + L+ I + ++ P
Sbjct: 83 VEEVEDAIKQTSQTLQLLIEHDPVPQRLDQSGPS 116
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21,
WBP4, metal- binding, mRNA processing, mRNA splicing,
nucleus, polymorphism; NMR {Homo sapiens}
Length = 75
Score = 52.0 bits (124), Expect = 1e-08
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 295 PLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRLCKFQKKLEDCSDDELPYGWERIDDPAY 354
P RW + T +G Y+ D S S W P + K W
Sbjct: 2 PSKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAV-----KTVWVEGLSEDG 56
Query: 355 GTYYIDHVNKQTQYENP 371
TYY + ++++E P
Sbjct: 57 FTYYYNTETGESRWEKP 73
Score = 38.9 bits (90), Expect = 5e-04
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 260 ELNDNNGRESPPSYYNPYIG--QGLKEIDPLLELDLGPLPPRWEKAYTEKGEVYFIDHNS 317
E + G YY+ G Q K +L + W + +E G Y+ + +
Sbjct: 9 EGITSEGY---HYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTET 65
Query: 318 STSSWLDP 325
S W P
Sbjct: 66 GESRWEKP 73
Score = 30.4 bits (68), Expect = 0.54
Identities = 10/58 (17%), Positives = 15/58 (25%), Gaps = 3/58 (5%)
Query: 340 DELPYGWERIDDPAYGTYYIDHVNKQTQYENPV---LQAKHRDQGAGPSEMDDNEHKV 394
D W YY D ++ +Q+E P K E +
Sbjct: 1 DPSKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFT 58
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 49.9 bits (119), Expect = 2e-07
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
I SVVP PA L G V+ +N T + ++IS GE + + +G
Sbjct: 29 IDSVVPGSPA--SKVLTPGLVIESINGMPTSNLT--TYSAALKTISVGEVINITTDQG 82
Score = 44.5 bits (105), Expect = 2e-05
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 1062 VLQIAENGPAALDGHLKVGDEIVEINGINTKNMTH-AEAIEIIRNGDSTVRLLIKRGGSV 1120
+ + PA L G I ING+ T N+T + A++ I G+ + + +G
Sbjct: 29 IDSVVPGSPA--SKVLTPGLVIESINGMPTSNLTTYSAALKTISVGE-VINITTDQGTFH 85
Query: 1121 V 1121
+
Sbjct: 86 L 86
Score = 36.8 bits (85), Expect = 0.007
Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 17/115 (14%)
Query: 835 RIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASV 894
+ + V I +VPG A L G I S++ + N + + SV
Sbjct: 16 NLYFQGHQPDGVQIDSVVPGSPAS--KVLTPGLVIESINGMPTSNLT--TYSAALKTISV 71
Query: 895 YGRVTLGIRRKVMPPAETTSMMLGYPYDVTITRRENEGFGFVIISSLNKAGSTIG 949
+ + + T + G N ++ I + N
Sbjct: 72 GEVINITTDQG------TFHLKTG-------RNPNNSSRAYMGIRTSNHLRVRDS 113
Score = 34.1 bits (78), Expect = 0.063
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 11/77 (14%)
Query: 926 TRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEI 985
+ REN F G I ++ SPA + L G I ++N + +L
Sbjct: 12 SGRENLYFQGH-----QPDGVQIDSVVPGSPASKV--LTPGLVIESINGMPTSNL--TTY 62
Query: 986 VNLIKDS--GYCVTLTI 1000
+K G + +T
Sbjct: 63 SAALKTISVGEVINITT 79
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 48.5 bits (116), Expect = 5e-07
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
I V+ PA G L+ GDV++ + ++ V + V++++ + +++ RG
Sbjct: 39 IHKVILGSPAHRAG-LRPGDVILAIGEQMV-----QNAEDVYEAVRTQSQLAVQIRRG 90
Score = 43.8 bits (104), Expect = 2e-05
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 1061 FVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGG 1118
+ ++ PA G L+ GD I+ I +N + E +R + + I+RG
Sbjct: 38 LIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNAE--DVYEAVRTQS-QLAVQIRRGR 91
Score = 33.4 bits (77), Expect = 0.083
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 945 GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
G I ++I SPA R+G L GD ILA+ + + ++ ++ + + + I
Sbjct: 36 GVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNA--EDVYEAVR-TQSQLAVQI 87
Score = 31.1 bits (71), Expect = 0.49
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 820 VMVITL---LRQENGFGFRIVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLS 876
VM++TL + E + G V I ++ G A G L GD I+++
Sbjct: 10 VMMLTLSPSILAELQLREPSFPDVQHG--VLIHKVILGSPAHRAG-LRPGDVILAIGEQM 66
Query: 877 VLNSSHHHVVELMGKASVYGRVTLGIRRK 905
V N+ ++ ++ + IRR
Sbjct: 67 VQNAE-----DVYEAVRTQSQLAVQIRRG 90
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine
protease, serine- lysine catalytic DYAD, PDZ domain,
photosynthesis; 1.80A {Scenedesmus obliquus} SCOP:
b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 50.3 bits (121), Expect = 2e-06
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 1031 EQYHAIELSRGTR----GFGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEI 1086
+ L RGT G G I + VL A GPA G + GD IV +
Sbjct: 71 SRLA--ALRRGTAGSVTGVGLEI-TYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTV 126
Query: 1087 NGINTKNMTHAEAIEIIRNGD--STVRLLIKRGGSVVAPTD 1125
+G K M+ + ++++ G+ S V +++ G+
Sbjct: 127 DGTAVKGMSLYDVSDLLQ-GEADSQVEVVLHAPGAPSNTRT 166
Score = 41.1 bits (97), Expect = 0.002
Identities = 15/104 (14%), Positives = 40/104 (38%), Gaps = 26/104 (25%)
Query: 907 MPPAETTSMM---------LGYPYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPA 957
+ P+ ++ +G + IT G V+++ PA
Sbjct: 68 LEPSRLAALRRGTAGSVTGVG----LEITYDGGSGKDVVVLT-----------PAPGGPA 112
Query: 958 DRSGELHLGDHILAVNHVDIMSLHHGEIVNLIK-DSGYCVTLTI 1000
+++G GD I+ V+ + + ++ +L++ ++ V + +
Sbjct: 113 EKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVL 155
Score = 38.0 bits (89), Expect = 0.015
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 427 LNPDELIGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVL 486
L P L R ++ S+ G+G I D + + + + P GPA G + GDV+
Sbjct: 68 LEPSRLAALRRGTA--GSVTGVGLEI-TYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVI 123
Query: 487 VYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
V V+ V G + +D+ + Q V++ +
Sbjct: 124 VTVDGTAVKGMSLYDVSDLLQG-EADSQVEVVLHA 157
Score = 36.5 bits (85), Expect = 0.052
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 14/66 (21%)
Query: 866 GDEIVSVDNLSVLNSSHHHVVELM-GKASVYG-RVTLGIRRKVMPPAETTSMMLGYPYDV 923
GD IV+VD +V S + V +L+ G+A +V + + P +
Sbjct: 120 GDVIVTVDGTAVKGMSLYDVSDLLQGEA---DSQVEVVLHAPGAP---------SNTRTL 167
Query: 924 TITRRE 929
+TR++
Sbjct: 168 QLTRQK 173
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 45.7 bits (109), Expect = 3e-06
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
+ SV+PN PAA G L+ GD + ++ + + T +VS + G+ V++ R
Sbjct: 9 VMSVLPNMPAA--GRLEAGDRIAAIDGQPI--NTSEQIVSYVREKQAGDRVRVTFIRD 62
Score = 43.4 bits (103), Expect = 2e-05
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 1061 FVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRN---GDSTVRLLIKRG 1117
+V+ + N PAA G L+ GD I I+G + + +R GD VR+ R
Sbjct: 8 YVMSVLPNMPAA--GRLEAGDRIAAIDGQPINTS--EQIVSYVREKQAGD-RVRVTFIRD 62
Query: 1118 G 1118
Sbjct: 63 R 63
Score = 30.3 bits (69), Expect = 0.79
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 846 VSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRR 904
V + ++P A GRL GD I ++D + S +V + + RV + R
Sbjct: 7 VYVMSVLPNMPAA--GRLEAGDRIAAIDGQPINTSE--QIVSYVREKQAGDRVRVTFIR 61
Score = 29.6 bits (67), Expect = 1.2
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 945 GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDS--GYCVTLTI 1000
G + ++ + PA G L GD I A++ I + +IV+ +++ G V +T
Sbjct: 6 GVYVMSVLPNMPAA--GRLEAGDRIAAIDGQPINTS--EQIVSYVREKQAGDRVRVTF 59
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 48.9 bits (116), Expect = 3e-06
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 294 GPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRLCKFQKKLEDCSD 339
+ WE+A + Y+I+H + T+ W P++ + + L D ++
Sbjct: 10 TSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTELYQSLADLNN 55
Score = 38.9 bits (90), Expect = 0.006
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 340 DELPYGWERIDDPAYGTYYIDHVNKQTQYENPVLQAK 376
+ WER P YYI+H + T +++P +
Sbjct: 10 TSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTEL 46
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 45.8 bits (109), Expect = 3e-06
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
+ SV + PAA L GD++ ++ + + + S G+TV++ G
Sbjct: 11 VMSVKDDVPAA--DVLHAGDLITEIDGNAF--KSSQEFIDYIHSKKVGDTVKINYKHG 64
Score = 44.2 bits (105), Expect = 1e-05
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 1061 FVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRN---GDSTVRLLIKRG 1117
+V+ + ++ PAA L GD I EI+G K+ E I+ I + GD TV++ K G
Sbjct: 10 YVMSVKDDVPAA--DVLHAGDLITEIDGNAFKSS--QEFIDYIHSKKVGD-TVKINYKHG 64
Query: 1118 G 1118
Sbjct: 65 D 65
Score = 30.7 bits (70), Expect = 0.72
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 836 IVGGTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVY 895
+V T +G V + + A L GD I +D + +S ++ + V
Sbjct: 1 MVKVTYDG--VYVMSVKDDVPAA--DVLHAGDLITEIDGNAFKSSQ--EFIDYIHSKKVG 54
Query: 896 GRVTLGIRR 904
V + +
Sbjct: 55 DTVKINYKH 63
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 47.8 bits (113), Expect = 5e-06
Identities = 30/177 (16%), Positives = 55/177 (31%), Gaps = 20/177 (11%)
Query: 938 ISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVT 997
I G + R+ E+SP R+G D I+++N + + L + V
Sbjct: 10 IPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVK 69
Query: 998 LTIGAPISGDDASSTTSVSAASHREYEEGGEHDEQYHAIELSRGTRGFGFSIRGGREFQN 1057
+ I S + S+ +G
Sbjct: 70 MLI---YSSKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENV------------- 113
Query: 1058 MALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLI 1114
VL++ N PAAL G D I+ + + ++ IE + ++L +
Sbjct: 114 --WHVLEVESNSPAALAGLRPHSDYIIGADTVMNESEDLFSLIE--THEAKPLKLYV 166
Score = 40.5 bits (94), Expect = 0.001
Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
Query: 1060 LFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGS 1119
VL++ EN P G D IV ING + N + V++LI +
Sbjct: 18 YHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKT 77
Query: 1120 ------VVAPTDNAAGIYSSDTSSNYWS 1141
V P++ G S + S
Sbjct: 78 LELRETSVTPSNLWGGQGLLGVSIRFCS 105
Score = 33.9 bits (77), Expect = 0.21
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 463 LQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
+ V N P G D +V +N + +D + + + V++ +
Sbjct: 18 YHVLRVQENSPGHRAGLEPFFDFIVSINGSRL--NKDNDTLKDLLKANVEKPVKMLIYSS 75
Score = 32.4 bits (73), Expect = 0.66
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 443 KSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDM 502
+ L G+ D + E + V N PAAL G D ++ + + D+
Sbjct: 94 QGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADT---VMNESEDL 150
Query: 503 VSVFQSISPGETVQLEVCR 521
S+ ++ + ++L V
Sbjct: 151 FSLIET-HEAKPLKLYVYN 168
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 44.9 bits (107), Expect = 6e-06
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
SVV N PA +G ++ GD ++ + K + ++ S G+ V L++ R
Sbjct: 5 ASSVVENMPA--KGKIEVGDKIISADGKNY--QSAEKLIDYISSKKAGDKVTLKIERE 58
Score = 43.4 bits (103), Expect = 2e-05
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 1061 FVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRN---GDSTVRLLIKRG 1117
+ + EN PA G ++VGD+I+ +G N ++ + I+ I + GD V L I+R
Sbjct: 4 YASSVVENMPA--KGKIEVGDKIISADGKNYQSA--EKLIDYISSKKAGD-KVTLKIERE 58
Query: 1118 G 1118
Sbjct: 59 E 59
Score = 30.3 bits (69), Expect = 0.80
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 846 VSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRK 905
+ +V A G++ GD+I+S D + ++ +++ + +VTL I R+
Sbjct: 3 IYASSVVENMPAK--GKIEVGDKIISADGKNYQSAE--KLIDYISSKKAGDKVTLKIERE 58
Score = 29.5 bits (67), Expect = 1.5
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 945 GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDS--GYCVTLTI 1000
G ++E+ PA G++ +GD I++ + + S ++++ I G VTL I
Sbjct: 2 GIYASSVVENMPAK--GKIEVGDKIISADGKNYQSA--EKLIDYISSKKAGDKVTLKI 55
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 48.1 bits (115), Expect = 9e-06
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 464 QIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
+I VV G AA G + G V+ V+D+ + +V+ +S +PG TV L
Sbjct: 245 KIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSAD--ALVAAVRSKAPGATVALTFQDP 300
Score = 34.6 bits (80), Expect = 0.17
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 1061 FVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRN---GDSTVRLLIKRG 1117
++++ G AA G + G + +++ + + +R+ G TV L +
Sbjct: 245 KIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSA--DALVAAVRSKAPGA-TVALTFQDP 300
Query: 1118 G 1118
Sbjct: 301 S 301
Score = 33.0 bits (76), Expect = 0.47
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 9/97 (9%)
Query: 936 VIISSLNKA-GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDS-- 992
V +++ G+ I ++ A +G + G + V+ I S +V ++
Sbjct: 233 VQVTNDKDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSA--DALVAAVRSKAP 289
Query: 993 GYCVTLTIGAPISGDDASSTTSVSAASHREYEEGGEH 1029
G V LT S T V+ + E H
Sbjct: 290 GATVALTF---QDPSGGSRTVQVTLGKAEQLEHHHHH 323
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 44.6 bits (105), Expect = 9e-06
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 1062 VLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGS 1119
V +IA N AA + G E+ ++GI T + + + GD + + + GS
Sbjct: 6 VGEIAANSIAAEAQ-IAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGS 62
Score = 33.8 bits (77), Expect = 0.047
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 948 IGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTIGAPISGD 1007
+G I +S A + + G + AV+ ++ + + K T+T+ S
Sbjct: 6 VGEIAANSIAAEAQ-IAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGSDQ 64
Query: 1008 DASSTTSVS 1016
+
Sbjct: 65 RRDVKLDLR 73
Score = 33.8 bits (77), Expect = 0.052
Identities = 8/57 (14%), Positives = 15/57 (26%), Gaps = 3/57 (5%)
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCR 521
+ + N AA + G L V+ + E+ + V
Sbjct: 6 VGEIAANSIAAEAQ-IAPGTELKAVDGIET--PDWDAVRLQLVDKIGDESTTITVAP 59
Score = 29.9 bits (67), Expect = 1.3
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 848 IGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRK 905
+G I A + G E+ +VD + V + T+ +
Sbjct: 6 VGEIAANSIAAEAQ-IAPGTELKAVDGIET--PDWDAVRLQLVDKIGDESTTITVAPF 60
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 48.0 bits (115), Expect = 9e-06
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
I V+ PA G L+ GDV++ + ++ V + V++++ + +++ RG
Sbjct: 260 IHKVILGSPAHRAG-LRPGDVILAIGEQMV-----QNAEDVYEAVRTQSQLAVQIRRG 311
Score = 43.0 bits (102), Expect = 4e-04
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 1061 FVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGG 1118
+ ++ PA G L+ GD I+ I +N + E +R S + + I+RG
Sbjct: 259 LIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNA--EDVYEAVRTQ-SQLAVQIRRGR 312
Score = 33.4 bits (77), Expect = 0.43
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 945 GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDSGYCVTLTI 1000
G I ++I SPA R+G L GD ILA+ + + ++ ++ + + + I
Sbjct: 257 GVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNA--EDVYEAVR-TQSQLAVQI 308
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 44.6 bits (106), Expect = 1e-05
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
++ V PN P+ G +Q GD++V VN + + D + +++ + LEV RG
Sbjct: 39 VQEVAPNSPSQRGG-IQDGDIIVKVNGRPL-----VDSSELQEAVLTESPLLLEVRRG 90
Score = 43.1 bits (102), Expect = 4e-05
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 1061 FVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGG 1118
+V ++A N P+ G ++ GD IV++NG + +E E + S + L ++RG
Sbjct: 38 YVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVDS--SELQEAVLTE-SPLLLEVRRGN 91
Score = 30.7 bits (70), Expect = 0.69
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 945 GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
G + + +SP+ R G + GD I+ VN ++
Sbjct: 36 GIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVD 69
Score = 28.4 bits (64), Expect = 5.0
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 848 IGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRK 905
+ + P + G + GD IV V+ +++SS EL + L +RR
Sbjct: 39 VQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVDSS-----ELQEAVLTESPLLLEVRRG 90
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 429
Score = 47.3 bits (113), Expect = 2e-05
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 292 DLGPLPPRWEKAYTEKGEVYFIDHNSSTSSWLDPRLCK 329
LGPLP WE T VYF+DHN+ T++W DPRL
Sbjct: 5 QLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPS 42
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 45.9 bits (109), Expect = 5e-05
Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 1037 ELSRGTRGFGFSIRGGREFQNM-ALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMT 1095
+ + GF +++ + + + PA G L+ G I+ +NG
Sbjct: 68 DEPIPSYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKV 126
Query: 1096 HAEAIEIIRNGDSTVRLLIKRG 1117
+E ++ G
Sbjct: 127 ESELLQGSTRQLQIGVYKEVVG 148
Score = 41.7 bits (98), Expect = 0.001
Identities = 24/161 (14%), Positives = 44/161 (27%), Gaps = 21/161 (13%)
Query: 447 GLGFTIVGGDDSKEE-FLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSV 505
G +T+ D+ I VVP PA G LQ G ++ +N + +++
Sbjct: 75 GFDYTLYKVLDNDTAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKVESELLQG 133
Query: 506 FQSI-----------SPGETVQLEVCRGYPLPFDPNDPNT-EVVTTVAVNAPDLDNGSDR 553
GE V G + P + +V + +
Sbjct: 134 STRQLQIGVYKEVVGEDGEVTGGVVPIG-----ETTMPASRSLVDKPVHRFEIIPWNGKK 188
Query: 554 HLYMSANDFTDQSVKSMPDLYT--SEKMVKLERPSSTDLIL 592
Y+ N+F + + +L
Sbjct: 189 VGYLMYNEFKAGPTTDSQAYNDDLRRAFRDFQTGGVNEFVL 229
Score = 36.7 bits (85), Expect = 0.042
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 929 ENEGFGFVIISSLNKAGSTIGRI---IEDSPADRSGELHLGDHILAVNHVDIMSLHHGEI 985
+ GF + + L+ + I + SPA+ +G L G I+ +N I E+
Sbjct: 72 PSYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKVESEL 130
Query: 986 VNLIKDSGYCVTLTIGAPISGDDASSTTSV 1015
+ + + + + G+D T V
Sbjct: 131 LQGSTRQ---LQIGVYKEVVGEDGEVTGGV 157
Score = 30.9 bits (70), Expect = 2.5
Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 6/102 (5%)
Query: 828 QENGFGFRIVG--GTEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHV 885
GF + + + I ++VPG A+ G L G I+ ++ + +
Sbjct: 72 PSYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKVESEL 130
Query: 886 VELMGKASVYGRVTLGIRRKVMPPAETTSMMLGYPYDVTITR 927
++ + G V + + T ++ + +R
Sbjct: 131 LQGSTRQLQIG-VYKEVVGE--DGEVTGGVVPIGETTMPASR 169
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 45.3 bits (108), Expect = 6e-05
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
I V+P+ PA G L+ DV++ +N + V V I T+ + V RG
Sbjct: 258 IIEVIPDTPAEAGG-LKENDVIISINGQSV-----VSANDVSDVIKRESTLNMVVRRG 309
Score = 43.4 bits (103), Expect = 3e-04
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 1061 FVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGG 1118
+++++ + PA G LK D I+ ING + + + ++I+ ST+ ++++RG
Sbjct: 257 YIIEVIPDTPAEAGG-LKENDVIISINGQSVVSA--NDVSDVIKRE-STLNMVVRRGN 310
Score = 34.6 bits (80), Expect = 0.16
Identities = 15/79 (18%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 923 VTITRRENEGFGFVIISSLNKA-GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLH 981
+++T + + + G+ I +I D+PA+ G L D I+++N ++S
Sbjct: 232 MSLTSSKAKELKDRHRDFPDVISGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVVSA- 289
Query: 982 HGEIVNLIKDSGYCVTLTI 1000
++ ++IK + + +
Sbjct: 290 -NDVSDVIK-RESTLNMVV 306
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 44.9 bits (107), Expect = 8e-05
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
+ V P+GPAA G +Q D+++ V++K + + + I PG + + V R
Sbjct: 248 VNEVSPDGPAANAG-IQVNDLIISVDNKPAISAL--ETMDQVAEIRPGSVIPVVVMRD 302
Score = 39.8 bits (94), Expect = 0.004
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 1061 FVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGG 1118
V +++ +GPAA G ++V D I+ ++ + S + +++ R
Sbjct: 247 VVNEVSPDGPAANAG-IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDD 303
Score = 33.3 bits (77), Expect = 0.41
Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 945 GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
G + + D PA +G + + D I++V++ +S
Sbjct: 245 GIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAIS 278
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3;
Fe65-like protein 2, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Length = 39
Score = 39.2 bits (91), Expect = 2e-04
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 335 EDCSDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPV 372
S LP GW +I D A GTYY + TQ++ P
Sbjct: 2 SSGSSGGLPPGWRKIHDAA-GTYYWHVPSGSTQWQRPT 38
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 41.4 bits (98), Expect = 2e-04
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
++SV N PA GHL+ DV+ V+DK + + D+ S + S G+T+++ R
Sbjct: 61 VRSVQSNMPA--NGHLEKYDVITKVDDKEI--ASSTDLQSALYNHSIGDTIKITYYRN 114
Score = 36.8 bits (86), Expect = 0.008
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 1061 FVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRN---GDSTVRLLIKRG 1117
V + N PA +GHL+ D I +++ + + + N GD T+++ R
Sbjct: 60 IVRSVQSNMPA--NGHLEKYDVITKVDDKEIASS--TDLQSALYNHSIGD-TIKITYYRN 114
Query: 1118 G 1118
G
Sbjct: 115 G 115
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 44.2 bits (103), Expect = 2e-04
Identities = 25/171 (14%), Positives = 60/171 (35%), Gaps = 11/171 (6%)
Query: 375 AKHRDQGAGPSEMDDNEHKVKDSPGKRIAPQARNTLVSTSNRSNNDENYFFTLNPDELIG 434
+ G ++ D + + PG I+ ++ L + + S + F + + +
Sbjct: 410 HEFGKTSIGTAD-DTVINWLNQYPGIDISDFLKDALYNKESLSLVELLQNFGVMVQKQVP 468
Query: 435 ERIHSSLVKSLR-GLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKC 493
+S K+ + + L + +V + A G L GD ++ ++
Sbjct: 469 VDDNSVGGKASEQPARVNFGAKYKASPQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQ 527
Query: 494 VLGYTHHDMVSVFQSISPGETVQLEVCRG-----YPLPFDPNDPNTEVVTT 539
T + + + PG+TV + R L + ++ V++
Sbjct: 528 A---TEQSVKRILERYIPGDTVTIHAFRRDELMTLELTWQEPAKSSYVLSV 575
Score = 41.9 bits (97), Expect = 0.001
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 1056 QNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIK 1115
L VL + + A G L GD+I+ I+ + + +E GD TV +
Sbjct: 494 SPQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATEQSVKRILERYIPGD-TVTIHAF 551
Query: 1116 RGG 1118
R
Sbjct: 552 RRD 554
Score = 32.7 bits (73), Expect = 0.89
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 840 TEEGSQVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVT 899
+ + ++ +A G L GD+I+++D+L + V ++ + VT
Sbjct: 492 KASPQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQA---TEQSVKRILERYIPGDTVT 547
Query: 900 LGIRR 904
+ R
Sbjct: 548 IHAFR 552
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B
member 1; triple-stranded beta-sheet; NMR {Homo sapiens}
SCOP: b.72.1.1
Length = 55
Score = 39.0 bits (90), Expect = 3e-04
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 338 SDDELPYGWERIDDPAYGTYYIDHVNKQTQYENPV 372
+D +LP GW R+ D + GTYY TQ+E P
Sbjct: 16 TDSDLPAGWMRVQDTS-GTYYWHIPTGTTQWEPPG 49
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 43.0 bits (102), Expect = 4e-04
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
+ V+P +A G ++ GD++ +N K + + ++ S + PG V+L + R
Sbjct: 267 VSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFA--ELRSRIATTEPGTKVKLGLLRN 321
Score = 36.1 bits (84), Expect = 0.058
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 1061 FVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGG 1118
FV ++ +A G +K GD I +NG + + + V+L + R G
Sbjct: 266 FVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNG 322
Score = 31.1 bits (71), Expect = 2.0
Identities = 8/35 (22%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 945 GSTIGRIIEDSPADRSGELHLGDHILAVNHVDIMS 979
G+ + ++ S + ++G + GD I ++N + S
Sbjct: 264 GAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNS 297
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 39.9 bits (93), Expect = 5e-04
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 433 IGERIHSSLVKSLRGLGFTIVGGDDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDK 492
I E I + + + + + V DD + ++ G LQ GD+ V +N
Sbjct: 10 IREAIARNPQEIFQYVRLSQVKRDDKVLGY-RVSPGKDPVLFESIG-LQDGDMAVALNGL 67
Query: 493 CVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
+ + M ++FQS++ + L V R
Sbjct: 68 DL--TDPNVMNTLFQSMNEMTEMSLTVERD 95
Score = 38.4 bits (89), Expect = 0.001
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 1062 VLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA-EAIEIIRNGDSTVRLLIKRGGSV 1120
V + G L+ GD V +NG++ + + + + L ++R G
Sbjct: 41 VSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTE-MSLTVERDGQQ 98
Query: 1121 V 1121
Sbjct: 99 H 99
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 39.0 bits (91), Expect = 6e-04
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 1064 QIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRNGDSTVRLLIKRGGSVV 1121
+ N A+ G L+ GD IV ++G + + N ++ L I+R GS +
Sbjct: 10 NVQPNSAASXAG-LQAGDRIVXVDGQPLTQWVTFVML-VRDNPGXSLALEIERQGSPL 65
Score = 39.0 bits (91), Expect = 7e-04
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 465 IKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
+++V PN A+ G LQ GD +V V+ + + + V + + +PG ++ LE+ R
Sbjct: 8 LENVQPNSAASXAG-LQAGDRIVXVDGQPLTQWV--TFVMLVRD-NPGXSLALEIERQ 61
Score = 33.2 bits (76), Expect = 0.065
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 947 TIGRIIEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIKDS-GYCVTLTI 1000
+ + +S A +G L GD I+ V+ + V L++D+ G + L I
Sbjct: 7 VLENVQPNSAASXAG-LQAGDRIVXVDGQPLTQWV--TFVMLVRDNPGXSLALEI 58
Score = 31.7 bits (72), Expect = 0.25
Identities = 19/104 (18%), Positives = 29/104 (27%), Gaps = 27/104 (25%)
Query: 848 IGHIVPGGAADLDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGRVTLGIRRKVM 907
+ ++ P AA G L GD IV VD + + + +R
Sbjct: 8 LENVQPNSAASXAG-LQAGDRIVXVDGQPLTQ---------------WVTFVMLVRDNPG 51
Query: 908 PPAETTSMMLGYPYDVTITRRENEGFGFVIISSLNKAGSTIGRI 951
G P +T+ G G IG +
Sbjct: 52 XSLALEIERQGSPLSLTLIPESXPG-----------NGXAIGFV 84
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 41.9 bits (99), Expect = 8e-04
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 16/91 (17%)
Query: 446 RG-LGFTIVGGDDSKEEFLQ---IKSVVPNGPAA----------LEGHLQTGDVLVYVND 491
R LG ++ + + P+GPA G L GD++ VN
Sbjct: 232 RPILGIKFAPDQSVEQLGVSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNG 291
Query: 492 KCVLGYTHHDMVSVFQSISPGETVQLEVCRG 522
V D+ + G+ V +EV RG
Sbjct: 292 TKV--SNGSDLYRILDQCKVGDEVTVEVLRG 320
Score = 36.1 bits (84), Expect = 0.060
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Query: 1061 FVLQIAENGPAA----------LDGHLKVGDEIVEINGINTKNMTH-AEAIEIIRNGDST 1109
VL +GPA G L +GD I +NG N + ++ + GD
Sbjct: 254 LVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYRILDQCKVGD-E 312
Query: 1110 VRLLIKRGG 1118
V + + RG
Sbjct: 313 VTVEVLRGD 321
Score = 29.9 bits (68), Expect = 4.7
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 12/68 (17%)
Query: 848 IGHIVPGGAAD----------LDGRLCTGDEIVSVDNLSVLNSSHHHVVELMGKASVYGR 897
+ P G A GRL GD I SV+ V N S + ++ + V
Sbjct: 255 VLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGS--DLYRILDQCKVGDE 312
Query: 898 VTLGIRRK 905
VT+ + R
Sbjct: 313 VTVEVLRG 320
Score = 29.5 bits (67), Expect = 5.6
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 14/76 (18%)
Query: 937 IISSLNKAGSTIGRIIEDSPADRSG----------ELHLGDHILAVNHVDIMSLHHGEIV 986
+ L +G + PA ++G L LGD I +VN + + ++
Sbjct: 244 SVEQLGVSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLY 301
Query: 987 NLIKDS--GYCVTLTI 1000
++ G VT+ +
Sbjct: 302 RILDQCKVGDEVTVEV 317
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 36.0 bits (83), Expect = 0.007
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 456 DDSKEEFLQIKSVVPNGPAALEGHLQTGDVLVYVNDKCVLGYTHHDMVSVFQSISPGETV 515
D K ++ G LQ GD+ V +N + M ++FQS++ +
Sbjct: 14 RDDKVLGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEM 70
Query: 516 QLEVCRG 522
L V R
Sbjct: 71 SLTVERD 77
Score = 35.6 bits (82), Expect = 0.010
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 1062 VLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHA-EAIEIIRNGDSTVRLLIKRGGSV 1120
V + G L+ GD V +NG++ + + + + L ++R G
Sbjct: 23 VSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTE-MSLTVERDGQQ 80
Query: 1121 V 1121
Sbjct: 81 H 81
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW
domain, beta sheet, Fe65, protein binding; 1.33A {Homo
sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Length = 38
Score = 33.1 bits (75), Expect = 0.024
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 341 ELPYGWERIDDPAYGTYYIDHVNKQTQYENPV 372
+LP GW R+ D + GTYY TQ+E P
Sbjct: 3 DLPAGWMRVQDTS-GTYYWHIPTGTTQWEPPG 33
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group
IV, rotamase; NMR {Emericella nidulans}
Length = 54
Score = 31.4 bits (71), Expect = 0.14
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 338 SDDELPYGWE-RIDDPAYGTYYIDHVNKQTQYENP 371
+ LP GWE R + YY + +++++E P
Sbjct: 4 VNTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPP 38
Score = 30.3 bits (68), Expect = 0.40
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 296 LPPRWEKAYT-EKGEVYFIDHNSSTSSWLDP 325
LP WE ++ K Y+ + + S W P
Sbjct: 8 LPAGWEVRHSNSKNLPYYFNPATRESRWEPP 38
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 35.2 bits (80), Expect = 0.16
Identities = 11/76 (14%), Positives = 21/76 (27%), Gaps = 3/76 (3%)
Query: 1045 FGFSIRGGREFQNMALFVLQIAENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIR 1104
F + A E P G G I +I+G + ++
Sbjct: 743 FKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGS--NIYRVLS 800
Query: 1105 N-GDSTVRLLIKRGGS 1119
++ R+ + G
Sbjct: 801 EKAGTSARIRLSGKGG 816
Score = 29.8 bits (66), Expect = 7.0
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 952 IEDSPADRSGELHLGDHILAVNHVDIMSLHHGEIVNLIK-DSGYCVTLTI 1000
E SP G G I ++ + + I ++ +G + +
Sbjct: 764 GEKSPIFEYGIDPTGYLIEDIDGETVGAGS--NIYRVLSEKAGTSARIRL 811
>3knd_B Targeting protein for XKLP2; mitosis, importin, transport, protein
transport; 2.15A {Xenopus laevis}
Length = 81
Score = 31.8 bits (72), Expect = 0.20
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 681 HKKTSPPFRSKTPTEMYTRP-----KEIVARRPKTPLVDTRSRSK 720
+K+T + ++ P + PKTPL+ T+ R +
Sbjct: 35 YKRTPARYHLRSRQREMEGPSPVKMIKTKLTNPKTPLLQTKGRHR 79
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain,
ordered linker; 1.60A {Candida albicans}
Length = 177
Score = 32.5 bits (74), Expect = 0.41
Identities = 9/82 (10%), Positives = 27/82 (32%), Gaps = 4/82 (4%)
Query: 338 SDDELPYGWE-RIDDPAYGTYYIDHVNKQTQYENPVLQAKHRDQGAGPSEMDDNEHKVKD 396
+ LP W R+ Y+++ ++ ++ P K ++ + +
Sbjct: 4 TSTGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYGTDKEVLNAYIAKFKNNGYKPLVN 63
Query: 397 SPGKRIAPQARNTLVSTSNRSN 418
G+ + + L+ +
Sbjct: 64 EDGQV---RVSHLLIKNNQSRK 82
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A
{Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Length = 583
Score = 32.9 bits (74), Expect = 0.74
Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 11/98 (11%)
Query: 919 YPYDVTITRRENEGFGFVIISSLNKAGSTIGRIIEDSPADRSGELHLGDHILAVNHVDIM 978
Y VT ++ GF+ I + + +ED I+ V +
Sbjct: 279 YISSVTDGDGKSHKVGFLRIPTY------SWQDMEDFDPSGPPPWEEFAKIIQVFSSNTE 332
Query: 979 SLHHGEIVNLIKD-SGYCVTLTIGAPISGDDASSTTSV 1015
+L I++ + G + L + D
Sbjct: 333 AL----IIDQTNNPGGSVLYLYALLSMLTDRPLELPKH 366
Score = 31.0 bits (69), Expect = 2.9
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 1067 ENGPAALDGHLKVGDEIVEINGINTKNMTHAEAIEIIRN-GDSTVRLLIKRGGSVVAP 1123
E+ + + +I+++ NT+ + I+ N G S + L P
Sbjct: 307 EDFDPSGPPPWEEFAKIIQVFSSNTEALI----IDQTNNPGGSVLYLYALLSMLTDRP 360
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 31.3 bits (71), Expect = 1.7
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 21/87 (24%)
Query: 826 LRQENGFGFRIVGGTEEGS------QVSIGHIVPGGAADLDGRLCTGDEIVSVDNLSVLN 879
+R E G F+I G T E V++ + + +C G S++
Sbjct: 120 IRNERGLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGG---------SLIA 170
Query: 880 SSH-----HHVVELMGKASVYGRVTLG 901
S H V ++ G
Sbjct: 171 PSVVLTGAHCVNSYQSNLDAI-KIRAG 196
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 3.5
Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 44/71 (61%)
Query: 169 EEFKQLEKSGCLLESGLYEGNHYGTPKPVKEPYVSLPQNVNLLPGAHPSSEGKRKRNRSN 228
+ K+L+ S L+ LY + P
Sbjct: 20 QALKKLQAS---LK--LYA------------------------DDSAP------------ 38
Query: 229 VEAMASK-SIE 238
A+A K ++E
Sbjct: 39 --ALAIKATME 47
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase;
HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB:
3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Length = 306
Score = 30.2 bits (69), Expect = 3.8
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 9/45 (20%)
Query: 496 GYTHHDMVSVFQSISPGETVQLEV-------CRGYPLPFDPNDPN 533
GY H++ +VF ++S + V + G P D
Sbjct: 27 GY--HELTTVFHAVSLVDEVTVRNADVLSLELVGEGADQLPTDER 69
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 29.5 bits (66), Expect = 7.9
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 13/81 (16%)
Query: 561 DFTDQSVKSMPDLYTSEKMVKLERPSSTDLILESDSEYL-------------TIPIVKGA 607
++ +S L + + LER + + + E T+ ++
Sbjct: 304 EWFVESDGVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDSR 363
Query: 608 MGFGFTIADSSHGQKVKKILD 628
G F+I +S + + D
Sbjct: 364 CGENFSIYKASDNSSLSQQFD 384
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 29.5 bits (66), Expect = 8.5
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 40 GGGSDSGEFAYVTNINKEKVKGAEKYLEEKAIILEIQGQKVAGYT 84
GG DS E A + + V GA K L+ ++E + + +
Sbjct: 18 DGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWE 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.390
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,724,431
Number of extensions: 1110874
Number of successful extensions: 3771
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2873
Number of HSP's successfully gapped: 1098
Length of query: 1145
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1041
Effective length of database: 3,798,009
Effective search space: 3953727369
Effective search space used: 3953727369
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.8 bits)