Query psy6911
Match_columns 263
No_of_seqs 227 out of 746
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 21:37:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00062 Lys: C-type lysozyme/ 100.0 1.5E-44 3.3E-49 298.6 2.3 102 156-263 1-107 (125)
2 cd00119 LYZ1 C-type lysozyme ( 100.0 1.5E-43 3.2E-48 291.9 5.9 102 156-263 1-104 (123)
3 smart00263 LYZ1 Alpha-lactalbu 100.0 6.2E-43 1.3E-47 289.6 6.2 101 156-263 1-106 (127)
4 PF00062 Lys: C-type lysozyme/ 100.0 1.4E-39 3E-44 269.0 5.4 95 14-113 1-111 (125)
5 smart00263 LYZ1 Alpha-lactalbu 100.0 1.2E-38 2.5E-43 264.1 5.8 93 14-112 1-109 (127)
6 cd00119 LYZ1 C-type lysozyme ( 100.0 1.5E-37 3.1E-42 256.3 5.2 100 14-121 1-113 (123)
7 PRK13722 lytic transglycosylas 98.6 1.1E-08 2.5E-13 88.9 -0.2 45 168-216 28-72 (169)
8 PRK15328 invasion protein IagB 98.5 1.3E-08 2.9E-13 87.7 -1.3 72 154-235 14-85 (160)
9 PRK13888 conjugal transfer pro 98.2 3.1E-07 6.8E-12 82.1 0.2 59 169-237 24-82 (206)
10 PRK13864 type IV secretion sys 97.7 1.2E-05 2.6E-10 73.8 1.4 45 170-219 39-106 (245)
11 PF01464 SLT: Transglycosylase 97.4 2E-05 4.4E-10 62.5 -0.9 75 169-253 9-83 (121)
12 PRK15328 invasion protein IagB 97.0 0.00021 4.6E-09 61.8 0.2 51 26-81 27-85 (160)
13 cd00254 LT_GEWL Lytic Transgly 97.0 0.00024 5.2E-09 54.5 0.5 64 180-253 4-67 (113)
14 cd01021 GEWL Goose Egg White L 96.5 0.001 2.2E-08 58.0 1.3 43 169-215 41-83 (166)
15 PRK13722 lytic transglycosylas 96.5 0.00084 1.8E-08 58.7 0.4 38 26-63 28-73 (169)
16 PF01464 SLT: Transglycosylase 96.0 0.0021 4.6E-08 50.9 0.3 60 34-99 22-83 (121)
17 PRK13888 conjugal transfer pro 95.2 0.008 1.7E-07 54.2 1.1 44 34-83 37-82 (206)
18 PRK15470 emtA lytic murein end 95.1 0.0064 1.4E-07 54.6 0.3 39 169-215 49-87 (203)
19 cd00254 LT_GEWL Lytic Transgly 95.0 0.0099 2.1E-07 45.5 1.0 59 34-99 9-67 (113)
20 PRK11671 mltC murein transglyc 93.6 0.025 5.4E-07 54.8 0.6 38 169-214 202-239 (359)
21 PF06737 Transglycosylas: Tran 93.1 0.0079 1.7E-07 46.5 -2.9 69 176-263 3-73 (77)
22 PF06737 Transglycosylas: Tran 91.8 0.14 3.1E-06 39.6 2.5 64 35-112 13-76 (77)
23 PRK13864 type IV secretion sys 89.8 0.11 2.5E-06 48.0 0.4 29 34-62 51-104 (245)
24 cd01021 GEWL Goose Egg White L 89.5 0.17 3.6E-06 44.3 1.2 35 27-61 41-83 (166)
25 PRK10783 mltD membrane-bound l 89.4 0.15 3.2E-06 50.7 1.0 43 163-214 108-150 (456)
26 PRK11619 lytic murein transgly 86.8 0.24 5.2E-06 51.3 0.7 33 179-216 495-528 (644)
27 PRK10859 membrane-bound lytic 82.7 0.5 1.1E-05 46.7 0.8 37 174-215 300-336 (482)
28 PHA00368 internal virion prote 78.1 0.87 1.9E-05 49.7 0.7 38 169-214 21-58 (1315)
29 PRK15470 emtA lytic murein end 75.0 1.4 3.1E-05 39.7 1.1 34 26-61 48-87 (203)
30 PRK11671 mltC murein transglyc 68.9 3 6.5E-05 40.7 1.9 35 25-61 200-240 (359)
31 PF05497 Destabilase: Destabil 67.0 0.53 1.1E-05 39.1 -3.2 40 181-221 7-46 (119)
32 PRK10783 mltD membrane-bound l 61.7 4.7 0.0001 40.3 1.8 39 20-60 107-150 (456)
33 COG0741 MltE Soluble lytic mur 58.6 2.6 5.7E-05 37.1 -0.6 30 181-215 158-187 (296)
34 COG4764 Uncharacterized protei 54.9 18 0.00038 32.1 3.9 48 169-219 54-109 (197)
35 PRK11619 lytic murein transgly 45.4 13 0.00028 38.7 2.0 38 23-62 485-528 (644)
36 PRK10859 membrane-bound lytic 38.1 15 0.00032 36.4 1.0 25 35-61 312-336 (482)
37 KOG4824|consensus 31.4 54 0.0012 30.0 3.4 66 146-212 18-89 (224)
38 PF07172 GRP: Glycine rich pro 29.7 36 0.00077 27.1 1.7 6 136-141 4-9 (95)
39 PF05497 Destabilase: Destabil 29.1 10 0.00022 31.6 -1.6 57 35-99 12-73 (119)
40 COG4623 Predicted soluble lyti 26.7 15 0.00033 36.7 -1.0 31 179-214 283-316 (473)
41 PHA00368 internal virion prote 26.3 39 0.00085 37.6 1.8 39 21-61 15-59 (1315)
42 COG3953 SLT domain proteins [G 22.1 19 0.00041 33.3 -1.2 40 175-214 13-57 (235)
No 1
>PF00062 Lys: C-type lysozyme/alpha-lactalbumin family; InterPro: IPR001916 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 22 GH22 from CAZY comprises enzymes with two known activities; lysozyme type C (3.2.1.17 from EC) and alpha-lactalbumins. Asp and/or the carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base. Alpha-lactalbumin [, ] is a milk protein that acts as the regulatory subunit of lactose synthetase, acting to promote the conversion of galactosyltransferase to lactose synthase, which is essential for milk production. In the mammary gland, alpha-lactalbumin changes the substrate specificity of galactosyltransferase from N-acetylglucosamine to glucose. Lysozymes (3.2.1.17 from EC) act as bacteriolytic enzymes by hydrolyzing the beta(1->4) bonds between N-acetylglucosamine and N-acetylmuramic acid in the peptidoglycan of prokaryotic cell walls. It has also been recruited for a digestive role in certain ruminants and colobine monkeys []. There are at least five different classes of lysozymes []: C (chicken type), G (goose type), phage-type (T4), fungi (Chalaropsis), and bacterial (Bacillus subtilis). There are few similarities in the sequences of the different types of lysozymes. Lysozyme type C and alpha-lactalbumin are similar both in terms of primary sequence and structure, and probably evolved from a common ancestral protein []. Around 35 to 40% of the residues are conserved in both proteins as well as the positions of the four disulphide bonds. There is, however, no similarity in function. Another significant difference between the two enzymes is that all lactalbumins have the ability to bind calcium [], while this property is restricted to only a few lysozymes []. The binding site was deduced using high resolution X-ray structure analysis and was shown to consist of three aspartic acid residues. It was first suggested that calcium bound to lactalbumin stabilised the structure, but recently it has been claimed that calcium controls the release of lactalbumin from the golgi membrane and that the pattern of ion binding may also affect the catalytic properties of the lactose synthetase complex.; PDB: 1HFX_A 1HMK_A 1HFY_B 1FKQ_A 1FKV_A 3B0K_B 1HML_A 1B9O_A 1A4V_A 3B0O_A ....
Probab=100.00 E-value=1.5e-44 Score=298.57 Aligned_cols=102 Identities=49% Similarity=0.905 Sum_probs=92.5
Q ss_pred ccccchHHHHHHHhC---CCCCCCcccceeeeeeccCCccccccccCCCCCceeeeeeeccccccCCCC-C-CCCcCCCC
Q psy6911 156 KTFRPCELAKVLLDN---DISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDRYWCTDAD-D-DIKACGIT 230 (263)
Q Consensus 156 kv~~rCeLa~~L~~~---g~~~~~l~~WvCia~~ES~~~T~ai~~~n~~Gs~dyGLFQIns~~WC~~~~-~-~~n~C~i~ 230 (263)
|||+|||||++|+++ ||++++|++|||||+|||+|||+|+++ +.|||+||||||||++|||++++ | ++|.|+|+
T Consensus 1 Kv~~rCeLa~~L~~~g~~g~~~~~l~~WvCla~~eS~f~T~a~~~-~~~gS~dyGIFQIns~~WC~~~~~~~~~n~C~i~ 79 (125)
T PF00062_consen 1 KVFTRCELARELKNAGLDGYPGYSLANWVCLAYHESGFNTSAVNY-NNDGSTDYGIFQINSRYWCSDGKTPGSKNICNIS 79 (125)
T ss_dssp -BC-HHHHHHHHHHTTGTTBTCBGHHHHHHHHHHHHTTBTT-EEE-ETTSEEEETTTTEETTTTSBCSSSTTSSTTTSSB
T ss_pred CcccHhHHHHHHHHcCCCCcchhhhhheeeeEecccCceeecccc-CCCCccccceeecCchhhccCCCCCCCCCccCCc
Confidence 799999999999964 566999999999999999999999999 56999999999999999999998 5 89999999
Q ss_pred cccccCCChHHHHHHHHHHHHhhcccCCCCCCC
Q psy6911 231 CKALEDDDLTDDIACARRIYRQHKRQGGNGKIS 263 (263)
Q Consensus 231 C~dLl~ddI~~di~CAk~I~~~h~~~~~~G~~a 263 (263)
|++||+|||++||.|||+|+++ ++||+|
T Consensus 80 C~~ll~ddI~ddi~Cak~I~~~-----~~G~~a 107 (125)
T PF00062_consen 80 CSDLLDDDITDDIRCAKKIYRE-----PQGFNA 107 (125)
T ss_dssp GGGGGSSSTHHHHHHHHHHHTH-----HTGGGG
T ss_pred cccccccchHHHHHHHHHHHcC-----cccchh
Confidence 9999999999999999999966 489875
No 2
>cd00119 LYZ1 C-type lysozyme (1, 4-beta-N-acetylmuramidase, LYZ) and alpha-lactalbumin (lactose synthase B protein, LA). They have a close evolutionary relationship and similar tertiary structure, however, functionally they are quite different. Lysozymes have primarily bacteriolytic function; hydrolysis of peptidoglycan of prokaryotic cell walls and transglycosylation. LA is a calcium-binding metalloprotein that is expressed exclusively in the mammary gland during lactation. LA is the regulatory subunit of the enzyme lactose synthase. The association of LA with the catalytic component of lactose synthase, galactosyltransferase, alters the acceptor substrate specificity of this glycosyltransferase, facilitating biosynthesis of lactose.
Probab=100.00 E-value=1.5e-43 Score=291.85 Aligned_cols=102 Identities=45% Similarity=0.843 Sum_probs=97.6
Q ss_pred ccccchHHHHHHHhCCC-CCCCcccceeeeeeccCCccccccccCCCCCceeeeeeeccccccCCCC-CCCCcCCCCccc
Q psy6911 156 KTFRPCELAKVLLDNDI-SKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDRYWCTDAD-DDIKACGITCKA 233 (263)
Q Consensus 156 kv~~rCeLa~~L~~~g~-~~~~l~~WvCia~~ES~~~T~ai~~~n~~Gs~dyGLFQIns~~WC~~~~-~~~n~C~i~C~d 233 (263)
|+|+|||||++|++.|+ ++++|++|||||++||+|+|+|+++ |.|||+|||||||||+|||++++ |++|.|+|+|++
T Consensus 1 k~~~rCeLa~~L~~~g~~~~~~l~~Wvcia~~ES~~nt~a~~~-n~~gs~dyGlfQINs~~WC~~~~~~~~n~C~i~C~~ 79 (123)
T cd00119 1 KIFTRCELAKELKRLGLYPGISLANWVCLAEHESGFNTQAVNN-NNDGSTDYGLFQINSKYWCNDGKTPSGNICHISCSK 79 (123)
T ss_pred CcCcHhHHHHHHHHcCCCCCCCHHHHHHHHHHHHCCCccceec-CCCCCeeEeEEEecchhhccCCCCCCCCCcCCCHHH
Confidence 68999999999998777 9999999999999999999999997 99999999999999999999998 689999999999
Q ss_pred ccCCChHHHHHHHHHHHHhhcccCCCCCCC
Q psy6911 234 LEDDDLTDDIACARRIYRQHKRQGGNGKIS 263 (263)
Q Consensus 234 Ll~ddI~~di~CAk~I~~~h~~~~~~G~~a 263 (263)
||+|||++||.|||+|+++ ++||+|
T Consensus 80 Ll~ddI~~~i~CAk~I~~~-----~~G~~a 104 (123)
T cd00119 80 LLDDDITDDIKCAKKIVKE-----HQGFDA 104 (123)
T ss_pred hccccHHHHHHHHHHHHhc-----CCCchh
Confidence 9999999999999999999 569976
No 3
>smart00263 LYZ1 Alpha-lactalbumin / lysozyme C.
Probab=100.00 E-value=6.2e-43 Score=289.58 Aligned_cols=101 Identities=44% Similarity=0.842 Sum_probs=96.8
Q ss_pred ccccchHHHHHHHhC---CCCCCCcccceeeeeeccCCccccccccCCCCCceeeeeeeccccccCCCC-C-CCCcCCCC
Q psy6911 156 KTFRPCELAKVLLDN---DISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDRYWCTDAD-D-DIKACGIT 230 (263)
Q Consensus 156 kv~~rCeLa~~L~~~---g~~~~~l~~WvCia~~ES~~~T~ai~~~n~~Gs~dyGLFQIns~~WC~~~~-~-~~n~C~i~ 230 (263)
|+|+|||||++|+++ |||+++|++|||||++||+|+|+|+++ |.|||+||||||||++|||.+++ | ++|.|+|+
T Consensus 1 k~~~rCeLa~~L~~~gl~g~~~~~l~~WvCia~~ES~~~t~a~~~-n~~gs~dyGLfQINs~~WC~~~~~~~~~n~C~i~ 79 (127)
T smart00263 1 KVFTRCELARELKRLGLDGYRGISLANWVCLAFHESGYNTQATNY-NNGGSTDYGIFQINSKYWCNDGKTPGSVNACGIS 79 (127)
T ss_pred CcCcHhHHHHHHHHhCcCCCCCcCHHHHHHHHHHHhcCCCcceec-CCCCCceeeEEEecccccccCCCCCCCCCcCCCC
Confidence 689999999999965 999999999999999999999999998 89999999999999999999997 4 89999999
Q ss_pred cccccCCChHHHHHHHHHHHHhhcccCCCCCCC
Q psy6911 231 CKALEDDDLTDDIACARRIYRQHKRQGGNGKIS 263 (263)
Q Consensus 231 C~dLl~ddI~~di~CAk~I~~~h~~~~~~G~~a 263 (263)
|++||+|||++||+|||+|+++ +||+|
T Consensus 80 C~~Ll~ddI~ddv~CAk~I~~~------~G~~a 106 (127)
T smart00263 80 CSKLLDDDITDDVKCAKKIVSD------QGIDA 106 (127)
T ss_pred HhhhcCCChHHHHHHHHHHHHH------cCchH
Confidence 9999999999999999999999 89876
No 4
>PF00062 Lys: C-type lysozyme/alpha-lactalbumin family; InterPro: IPR001916 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 22 GH22 from CAZY comprises enzymes with two known activities; lysozyme type C (3.2.1.17 from EC) and alpha-lactalbumins. Asp and/or the carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base. Alpha-lactalbumin [, ] is a milk protein that acts as the regulatory subunit of lactose synthetase, acting to promote the conversion of galactosyltransferase to lactose synthase, which is essential for milk production. In the mammary gland, alpha-lactalbumin changes the substrate specificity of galactosyltransferase from N-acetylglucosamine to glucose. Lysozymes (3.2.1.17 from EC) act as bacteriolytic enzymes by hydrolyzing the beta(1->4) bonds between N-acetylglucosamine and N-acetylmuramic acid in the peptidoglycan of prokaryotic cell walls. It has also been recruited for a digestive role in certain ruminants and colobine monkeys []. There are at least five different classes of lysozymes []: C (chicken type), G (goose type), phage-type (T4), fungi (Chalaropsis), and bacterial (Bacillus subtilis). There are few similarities in the sequences of the different types of lysozymes. Lysozyme type C and alpha-lactalbumin are similar both in terms of primary sequence and structure, and probably evolved from a common ancestral protein []. Around 35 to 40% of the residues are conserved in both proteins as well as the positions of the four disulphide bonds. There is, however, no similarity in function. Another significant difference between the two enzymes is that all lactalbumins have the ability to bind calcium [], while this property is restricted to only a few lysozymes []. The binding site was deduced using high resolution X-ray structure analysis and was shown to consist of three aspartic acid residues. It was first suggested that calcium bound to lactalbumin stabilised the structure, but recently it has been claimed that calcium controls the release of lactalbumin from the golgi membrane and that the pattern of ion binding may also affect the catalytic properties of the lactose synthetase complex.; PDB: 1HFX_A 1HMK_A 1HFY_B 1FKQ_A 1FKV_A 3B0K_B 1HML_A 1B9O_A 1A4V_A 3B0O_A ....
Probab=100.00 E-value=1.4e-39 Score=269.00 Aligned_cols=95 Identities=34% Similarity=0.641 Sum_probs=85.9
Q ss_pred eeechhHHHHHHHHcCCCCc------------eeccCCcccccccCCCCC--CccceeccccccCCCCC--CCcccCccc
Q psy6911 14 FVTFKCVVKKRVLKLSSKGF------------LHIEGFLTHVVPTAPANV--PEMNHINDRYWCTDADD--DIKACGITC 77 (263)
Q Consensus 14 ~~~~rC~la~~l~~~g~~g~------------~~ES~fnT~a~n~~~~~s--yGIFQIns~~WC~~~~~--~~n~C~i~C 77 (263)
+||+||||||+|+++||+|| +|||+|||+|++++++|| ||||||||+|||.++++ ++|.|+|+|
T Consensus 1 Kv~~rCeLa~~L~~~g~~g~~~~~l~~WvCla~~eS~f~T~a~~~~~~gS~dyGIFQIns~~WC~~~~~~~~~n~C~i~C 80 (125)
T PF00062_consen 1 KVFTRCELARELKNAGLDGYPGYSLANWVCLAYHESGFNTSAVNYNNDGSTDYGIFQINSRYWCSDGKTPGSKNICNISC 80 (125)
T ss_dssp -BC-HHHHHHHHHHTTGTTBTCBGHHHHHHHHHHHHTTBTT-EEEETTSEEEETTTTEETTTTSBCSSSTTSSTTTSSBG
T ss_pred CcccHhHHHHHHHHcCCCCcchhhhhheeeeEecccCceeeccccCCCCccccceeecCchhhccCCCCCCCCCccCCcc
Confidence 58999999999999999987 399999999999987787 99999999999999985 579999999
Q ss_pred ccccCCChHHHHHHHHHHHHhhcccCCCCccccccc
Q psy6911 78 KALEDDDLTDDIACARRIYRQHKRQGGNGKISNLVQ 113 (263)
Q Consensus 78 s~Ll~ddI~~di~CAk~I~~~~~~~~~~G~~aW~~~ 113 (263)
++||+|||++||.|||+|++++ +||+||+++
T Consensus 81 ~~ll~ddI~ddi~Cak~I~~~~-----~G~~aW~~w 111 (125)
T PF00062_consen 81 SDLLDDDITDDIRCAKKIYREP-----QGFNAWVAW 111 (125)
T ss_dssp GGGGSSSTHHHHHHHHHHHTHH-----TGGGGSHHH
T ss_pred ccccccchHHHHHHHHHHHcCc-----ccchhhHHH
Confidence 9999999999999999999777 699999963
No 5
>smart00263 LYZ1 Alpha-lactalbumin / lysozyme C.
Probab=100.00 E-value=1.2e-38 Score=264.11 Aligned_cols=93 Identities=31% Similarity=0.663 Sum_probs=87.3
Q ss_pred eeechhHHHHHHHHcCCCCce------------eccCCcccccccCCCCC--CccceeccccccCCCCC--CCcccCccc
Q psy6911 14 FVTFKCVVKKRVLKLSSKGFL------------HIEGFLTHVVPTAPANV--PEMNHINDRYWCTDADD--DIKACGITC 77 (263)
Q Consensus 14 ~~~~rC~la~~l~~~g~~g~~------------~ES~fnT~a~n~~~~~s--yGIFQIns~~WC~~~~~--~~n~C~i~C 77 (263)
++|+||||||+|++.||+||. +||+|||+|+++++++| ||||||||+|||.++++ ++|.|+|+|
T Consensus 1 k~~~rCeLa~~L~~~gl~g~~~~~l~~WvCia~~ES~~~t~a~~~n~~gs~dyGLfQINs~~WC~~~~~~~~~n~C~i~C 80 (127)
T smart00263 1 KVFTRCELARELKRLGLDGYRGISLANWVCLAFHESGYNTQATNYNNGGSTDYGIFQINSKYWCNDGKTPGSVNACGISC 80 (127)
T ss_pred CcCcHhHHHHHHHHhCcCCCCCcCHHHHHHHHHHHhcCCCcceecCCCCCceeeEEEecccccccCCCCCCCCCcCCCCH
Confidence 479999999999999999983 99999999999888777 99999999999999875 689999999
Q ss_pred ccccCCChHHHHHHHHHHHHhhcccCCCCcccccc
Q psy6911 78 KALEDDDLTDDIACARRIYRQHKRQGGNGKISNLV 112 (263)
Q Consensus 78 s~Ll~ddI~~di~CAk~I~~~~~~~~~~G~~aW~~ 112 (263)
++||+|||++||.|||+|++++ ||+||++
T Consensus 81 ~~Ll~ddI~ddv~CAk~I~~~~------G~~aW~~ 109 (127)
T smart00263 81 SKLLDDDITDDVKCAKKIVSDQ------GIDAWVA 109 (127)
T ss_pred hhhcCCChHHHHHHHHHHHHHc------CchHHHH
Confidence 9999999999999999999995 9999997
No 6
>cd00119 LYZ1 C-type lysozyme (1, 4-beta-N-acetylmuramidase, LYZ) and alpha-lactalbumin (lactose synthase B protein, LA). They have a close evolutionary relationship and similar tertiary structure, however, functionally they are quite different. Lysozymes have primarily bacteriolytic function; hydrolysis of peptidoglycan of prokaryotic cell walls and transglycosylation. LA is a calcium-binding metalloprotein that is expressed exclusively in the mammary gland during lactation. LA is the regulatory subunit of the enzyme lactose synthase. The association of LA with the catalytic component of lactose synthase, galactosyltransferase, alters the acceptor substrate specificity of this glycosyltransferase, facilitating biosynthesis of lactose.
Probab=100.00 E-value=1.5e-37 Score=256.28 Aligned_cols=100 Identities=32% Similarity=0.587 Sum_probs=91.2
Q ss_pred eeechhHHHHHHHHcCC-CCc---------eeccCCcccccccCCCCC--CccceeccccccCCCCC-CCcccCcccccc
Q psy6911 14 FVTFKCVVKKRVLKLSS-KGF---------LHIEGFLTHVVPTAPANV--PEMNHINDRYWCTDADD-DIKACGITCKAL 80 (263)
Q Consensus 14 ~~~~rC~la~~l~~~g~-~g~---------~~ES~fnT~a~n~~~~~s--yGIFQIns~~WC~~~~~-~~n~C~i~Cs~L 80 (263)
+||+|||||++|++.|+ +++ +|||+|||+|+++|++|+ ||||||||+|||+++++ ++|.|+|+|++|
T Consensus 1 k~~~rCeLa~~L~~~g~~~~~~l~~Wvcia~~ES~~nt~a~~~n~~gs~dyGlfQINs~~WC~~~~~~~~n~C~i~C~~L 80 (123)
T cd00119 1 KIFTRCELAKELKRLGLYPGISLANWVCLAEHESGFNTQAVNNNNDGSTDYGLFQINSKYWCNDGKTPSGNICHISCSKL 80 (123)
T ss_pred CcCcHhHHHHHHHHcCCCCCCCHHHHHHHHHHHHCCCccceecCCCCCeeEeEEEecchhhccCCCCCCCCCcCCCHHHh
Confidence 58999999999999999 666 399999999999988887 99999999999999987 699999999999
Q ss_pred cCCChHHHHHHHHHHHHhhcccCCCCccccccccccccccc
Q psy6911 81 EDDDLTDDIACARRIYRQHKRQGGNGKISNLVQISQLNKYS 121 (263)
Q Consensus 81 l~ddI~~di~CAk~I~~~~~~~~~~G~~aW~~~~~~i~~C~ 121 (263)
|+|||++||.|||+|+++| +||+||++ |...|.
T Consensus 81 l~ddI~~~i~CAk~I~~~~-----~G~~aW~~---w~~~C~ 113 (123)
T cd00119 81 LDDDITDDIKCAKKIVKEH-----QGFDAWVA---WKNHCQ 113 (123)
T ss_pred ccccHHHHHHHHHHHHhcC-----CCchhHHH---HHHhCC
Confidence 9999999999999999997 69999995 444554
No 7
>PRK13722 lytic transglycosylase; Provisional
Probab=98.55 E-value=1.1e-08 Score=88.93 Aligned_cols=45 Identities=22% Similarity=0.353 Sum_probs=40.6
Q ss_pred HhCCCCCCCcccceeeeeeccCCccccccccCCCCCceeeeeeeccccc
Q psy6911 168 LDNDISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDRYW 216 (263)
Q Consensus 168 ~~~g~~~~~l~~WvCia~~ES~~~T~ai~~~n~~Gs~dyGLFQIns~~W 216 (263)
++++++...| .-|+..||+|++.|++. |.+|+.|+||||||+.++
T Consensus 28 ~~y~vdp~LL---~AIi~~ES~fnp~Avs~-n~~gs~d~GLMQIn~~~~ 72 (169)
T PRK13722 28 RDYKIDPDLL---RAISWKESRYRVNAIGI-NPVTGYGSGLMQVDSQHF 72 (169)
T ss_pred HHcCCCHHHH---HHHHHHHcCCCCCCeec-CCCCCeeecCCcccHHHH
Confidence 3689998887 78999999999999997 889999999999999854
No 8
>PRK15328 invasion protein IagB; Provisional
Probab=98.50 E-value=1.3e-08 Score=87.65 Aligned_cols=72 Identities=31% Similarity=0.359 Sum_probs=53.4
Q ss_pred ccccccchHHHHHHHhCCCCCCCcccceeeeeeccCCccccccccCCCCCceeeeeeeccccccCCCCCCCCcCCCCccc
Q psy6911 154 RCKTFRPCELAKVLLDNDISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDRYWCTDADDDIKACGITCKA 233 (263)
Q Consensus 154 ~akv~~rCeLa~~L~~~g~~~~~l~~WvCia~~ES~~~T~ai~~~n~~Gs~dyGLFQIns~~WC~~~~~~~n~C~i~C~d 233 (263)
.+..|..|-.. .-+.++++...| ..|+.+||+|++.++++ |.+|+.|+||||||+.+|..- + .-+++-.+
T Consensus 14 ~~~a~~~c~~~-aa~~y~Idp~Ll---~AIa~~ES~f~p~avs~-n~~gs~d~GLMQIn~~~~~~l-~----~~gv~~~~ 83 (160)
T PRK15328 14 INTAWADCWLQ-AEKMFNIESELL---YAIAQQESAMKPGAIGH-NRDGSTDLGLMQINSFHMKRL-K----KMGISEKQ 83 (160)
T ss_pred CchHHHHHHHH-HHHHcCCCHHHH---HHHHHHHcCCCCCCEec-CCCCCcccChhhcCHHHHHHH-H----HcCCChHH
Confidence 44445556442 334689998888 89999999999999998 889999999999999976431 1 12355556
Q ss_pred cc
Q psy6911 234 LE 235 (263)
Q Consensus 234 Ll 235 (263)
|+
T Consensus 84 ll 85 (160)
T PRK15328 84 LL 85 (160)
T ss_pred Hh
Confidence 54
No 9
>PRK13888 conjugal transfer protein TrbN; Provisional
Probab=98.20 E-value=3.1e-07 Score=82.08 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=47.8
Q ss_pred hCCCCCCCcccceeeeeeccCCccccccccCCCCCceeeeeeeccccccCCCCCCCCcCCCCcccccCC
Q psy6911 169 DNDISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDRYWCTDADDDIKACGITCKALEDD 237 (263)
Q Consensus 169 ~~g~~~~~l~~WvCia~~ES~~~T~ai~~~n~~Gs~dyGLFQIns~~WC~~~~~~~n~C~i~C~dLl~d 237 (263)
++++|...| .-|+..||+ ++.++++ |+|||+|||+|||||. |-.+.. .=+++=++|++|
T Consensus 24 ~Y~Ipp~LL---~AIa~~ESg-~pgai~~-N~NGT~DvGlMQINS~-hlp~L~----~~GI~~~~L~~d 82 (206)
T PRK13888 24 KYEVPANIV---LAVAEKEGG-KPGQWVR-NTNGTHDVGPMQFNTA-YLGDLA----RYGITANDVAAA 82 (206)
T ss_pred HcCCCHHHH---HHHHHHhCC-CCCCEEe-CCCCCEEeCCcccccH-hHHHHH----HcCCCHHHhCCC
Confidence 688888777 789999996 9999998 9999999999999999 666543 124555677766
No 10
>PRK13864 type IV secretion system lytic transglycosylase VirB1; Provisional
Probab=97.71 E-value=1.2e-05 Score=73.82 Aligned_cols=45 Identities=33% Similarity=0.489 Sum_probs=37.8
Q ss_pred CCCCCCCcccceeeeeeccCCccccccccCCCC-----------------------CceeeeeeeccccccCC
Q psy6911 170 NDISKDDIATWLCIARYESTFNSSAVGHMSGDG-----------------------SLDHGIFQINDRYWCTD 219 (263)
Q Consensus 170 ~g~~~~~l~~WvCia~~ES~~~T~ai~~~n~~G-----------------------s~dyGLFQIns~~WC~~ 219 (263)
..++...| .-||..||+||+-|++. |.+| +.|+||||||+. |-..
T Consensus 39 P~V~P~tL---~AIa~vESg~nP~AI~~-N~~G~~l~~qs~~EAi~~a~~l~~~g~s~DvGLmQINs~-nl~~ 106 (245)
T PRK13864 39 PSVAPSTL---AAIAKVESRFDPLAVHD-NTTGETLHWQNHAQATQSVRHRLEARHSLDVGLMQINSK-NFSV 106 (245)
T ss_pred CCCCHHHH---HHHHHHhccCCCcceee-cCCCCccCCCCHHHHHHHHHHHHhcCCceeeechhccHH-HHHH
Confidence 56776666 78999999999999987 7777 799999999999 4443
No 11
>PF01464 SLT: Transglycosylase SLT domain; InterPro: IPR008258 Bacterial lytic transglycosylases degrade murein via cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine, with the concomitant formation of a 1,6-anhydrobond in the muramic acid residue. There are both soluble (Slt enzymes) and membrane-bound (Mlt enzymes) lytic transglycosylases that differ in size, sequence, activity, specificity and location. The multi-domain structure of the 70 Kd soluble lytic transglycosylase Slt70 is known []. Slt70 has 3 distinct domains, each rich in alpha helices: an N-terminal superhelical U-shaped domain (U-domain; IPR008939 from INTERPRO), a superhelical linker domain (L-domain, IPR012289 from INTERPRO), and a C-terminal catalytic domain (IPR008258 from INTERPRO). Both the U- and L-domain share a similar superhelical structure. These two domains are connected, and together form a closed ring with a large central hole; the catalytic domain is packed on top of, and interacts with, this ring. The catalytic domain has a lysosome-like fold. This entry represents the catalytic domain, which is structurally conserved in some membrane-bound lytic glycosylases and in bacteriophage transglycosylases, even though their sequences can differ considerably proteins []. The most conserved part of this domain is its N-terminal extremity that contains two conserved serines and a glutamate, which have been shown [] to be involved in the catalytic mechanism. This family is distantly related to IPR001916 from INTERPRO.; PDB: 2Y8P_B 3MGW_A 1QTE_A 1SLY_A 1QSA_A 153L_A 154L_A 3BKV_A 3BKH_A 1LSP_A ....
Probab=97.44 E-value=2e-05 Score=62.49 Aligned_cols=75 Identities=24% Similarity=0.232 Sum_probs=52.2
Q ss_pred hCCCCCCCcccceeeeeeccCCccccccccCCCCCceeeeeeeccccccCCCCCCCCcCCCCcccccCCChHHHHHHHHH
Q psy6911 169 DNDISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDRYWCTDADDDIKACGITCKALEDDDLTDDIACARR 248 (263)
Q Consensus 169 ~~g~~~~~l~~WvCia~~ES~~~T~ai~~~n~~Gs~dyGLFQIns~~WC~~~~~~~n~C~i~C~dLl~ddI~~di~CAk~ 248 (263)
+.+++...| .-|++.||+|++.+++. +.+++.++|||||+...|-.-+. ... .-.+++ .|....|.++-.
T Consensus 9 ~~~v~~~~l---~ai~~~ES~~~~~a~~~-~~~~~~a~GlmQi~~~t~~~~~~-~~~----~~~~~~-~dp~~ni~~g~~ 78 (121)
T PF01464_consen 9 KYGVPPSLL---AAIAYQESGFNPNAVSY-NSNGSGAYGLMQINPATWKDYGR-KGG----LSPDDL-FDPEDNIQAGAK 78 (121)
T ss_dssp HHTS-HHHH---HHHHHHHHTTCTTTBTT-BETTTTEETTTTEETTTSHHHSH-THC----TSHHHH-HHHHHHHHHHHH
T ss_pred HHCCCHHHH---HHHHHHhcCCCCCCcCC-CCCCCcceeccccCCcccchhhh-ccc----ccchhh-hCHHHHHHHHHH
Confidence 356665444 66999999999999987 57789999999999998755332 000 222333 355667888888
Q ss_pred HHHhh
Q psy6911 249 IYRQH 253 (263)
Q Consensus 249 I~~~h 253 (263)
+++++
T Consensus 79 ~L~~~ 83 (121)
T PF01464_consen 79 YLKWL 83 (121)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 12
>PRK15328 invasion protein IagB; Provisional
Probab=96.96 E-value=0.00021 Score=61.76 Aligned_cols=51 Identities=14% Similarity=-0.003 Sum_probs=36.6
Q ss_pred HHcCCCCc------eeccCCcccccccCCCCC--CccceeccccccCCCCCCCcccCccccccc
Q psy6911 26 LKLSSKGF------LHIEGFLTHVVPTAPANV--PEMNHINDRYWCTDADDDIKACGITCKALE 81 (263)
Q Consensus 26 ~~~g~~g~------~~ES~fnT~a~n~~~~~s--yGIFQIns~~WC~~~~~~~n~C~i~Cs~Ll 81 (263)
++.|+|.. .+||+||+.|++.+.+|+ +||+|||+.+|..- ..-+++-.+||
T Consensus 27 ~~y~Idp~Ll~AIa~~ES~f~p~avs~n~~gs~d~GLMQIn~~~~~~l-----~~~gv~~~~ll 85 (160)
T PRK15328 27 KMFNIESELLYAIAQQESAMKPGAIGHNRDGSTDLGLMQINSFHMKRL-----KKMGISEKQLL 85 (160)
T ss_pred HHcCCCHHHHHHHHHHHcCCCCCCEecCCCCCcccChhhcCHHHHHHH-----HHcCCChHHHh
Confidence 44567764 499999999999876666 99999999887531 12345555655
No 13
>cd00254 LT_GEWL Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.
Probab=96.96 E-value=0.00024 Score=54.55 Aligned_cols=64 Identities=28% Similarity=0.262 Sum_probs=44.8
Q ss_pred ceeeeeeccCCccccccccCCCCCceeeeeeeccccccCCCCCCCCcCCCCcccccCCChHHHHHHHHHHHHhh
Q psy6911 180 WLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDRYWCTDADDDIKACGITCKALEDDDLTDDIACARRIYRQH 253 (263)
Q Consensus 180 WvCia~~ES~~~T~ai~~~n~~Gs~dyGLFQIns~~WC~~~~~~~n~C~i~C~dLl~ddI~~di~CAk~I~~~h 253 (263)
+.-|+..||+|++.+++ +++.++|||||+...|-.-+.. ....=.+ -.|..+.|..+-.++..+
T Consensus 4 l~ai~~~ES~~~~~a~~----~~~~a~GlmQi~~~~~~~~~~~----~~~~~~~--~~dp~~ni~~~~~~l~~~ 67 (113)
T cd00254 4 LLAIIRQESGFNPNAVN----SGAGAVGLMQFMPSTARAYGVD----GGDGADD--LFDPEDNIRAGARYLKEL 67 (113)
T ss_pred HHHHHHHHCCCCCCCcc----CCCCCeeeeeeCchHHHHHHHh----cCCChhh--cCCHHHHHHHHHHHHHHH
Confidence 35588999999999984 3689999999999988654431 0000112 236677888888887764
No 14
>cd01021 GEWL Goose Egg White Lysozyme domain. Eukaryotic "goose-type" lysozymes (GEWL). These enzymes catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc). Members include tunicate, Japanese flounder, ostrich, and mouse.
Probab=96.52 E-value=0.001 Score=58.05 Aligned_cols=43 Identities=21% Similarity=0.202 Sum_probs=37.0
Q ss_pred hCCCCCCCcccceeeeeeccCCccccccccCCCCCceeeeeeecccc
Q psy6911 169 DNDISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDRY 215 (263)
Q Consensus 169 ~~g~~~~~l~~WvCia~~ES~~~T~ai~~~n~~Gs~dyGLFQIns~~ 215 (263)
+++++...| .-|+..||+|++.+++. +.++..++|||||+...
T Consensus 41 ~y~idp~Li---~Aii~~ES~f~~~a~~~-~~s~~ga~GLMQi~p~t 83 (166)
T cd01021 41 KKCIDPAVI---AAIISRESRAGKVLKNG-WGGAGNGFGLMQVDKRS 83 (166)
T ss_pred HhCcCHHHH---HHHHHHHcCCCcccccC-CCCCCCCeEEeeECccc
Confidence 588887766 67999999999999976 67788999999999984
No 15
>PRK13722 lytic transglycosylase; Provisional
Probab=96.46 E-value=0.00084 Score=58.70 Aligned_cols=38 Identities=3% Similarity=0.050 Sum_probs=30.7
Q ss_pred HHcCCCCc------eeccCCcccccccCCCCC--Cccceecccccc
Q psy6911 26 LKLSSKGF------LHIEGFLTHVVPTAPANV--PEMNHINDRYWC 63 (263)
Q Consensus 26 ~~~g~~g~------~~ES~fnT~a~n~~~~~s--yGIFQIns~~WC 63 (263)
++.|+|.. +.||+||+.|++.|++|+ +||.|||+.++-
T Consensus 28 ~~y~vdp~LL~AIi~~ES~fnp~Avs~n~~gs~d~GLMQIn~~~~~ 73 (169)
T PRK13722 28 RDYKIDPDLLRAISWKESRYRVNAIGINPVTGYGSGLMQVDSQHFN 73 (169)
T ss_pred HHcCCCHHHHHHHHHHHcCCCCCCeecCCCCCeeecCCcccHHHHH
Confidence 44567765 489999999998877776 999999997653
No 16
>PF01464 SLT: Transglycosylase SLT domain; InterPro: IPR008258 Bacterial lytic transglycosylases degrade murein via cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine, with the concomitant formation of a 1,6-anhydrobond in the muramic acid residue. There are both soluble (Slt enzymes) and membrane-bound (Mlt enzymes) lytic transglycosylases that differ in size, sequence, activity, specificity and location. The multi-domain structure of the 70 Kd soluble lytic transglycosylase Slt70 is known []. Slt70 has 3 distinct domains, each rich in alpha helices: an N-terminal superhelical U-shaped domain (U-domain; IPR008939 from INTERPRO), a superhelical linker domain (L-domain, IPR012289 from INTERPRO), and a C-terminal catalytic domain (IPR008258 from INTERPRO). Both the U- and L-domain share a similar superhelical structure. These two domains are connected, and together form a closed ring with a large central hole; the catalytic domain is packed on top of, and interacts with, this ring. The catalytic domain has a lysosome-like fold. This entry represents the catalytic domain, which is structurally conserved in some membrane-bound lytic glycosylases and in bacteriophage transglycosylases, even though their sequences can differ considerably proteins []. The most conserved part of this domain is its N-terminal extremity that contains two conserved serines and a glutamate, which have been shown [] to be involved in the catalytic mechanism. This family is distantly related to IPR001916 from INTERPRO.; PDB: 2Y8P_B 3MGW_A 1QTE_A 1SLY_A 1QSA_A 153L_A 154L_A 3BKV_A 3BKH_A 1LSP_A ....
Probab=95.97 E-value=0.0021 Score=50.86 Aligned_cols=60 Identities=15% Similarity=0.109 Sum_probs=41.3
Q ss_pred eeccCCcccccccCCCCC--CccceeccccccCCCCCCCcccCcccccccCCChHHHHHHHHHHHHhh
Q psy6911 34 LHIEGFLTHVVPTAPANV--PEMNHINDRYWCTDADDDIKACGITCKALEDDDLTDDIACARRIYRQH 99 (263)
Q Consensus 34 ~~ES~fnT~a~n~~~~~s--yGIFQIns~~WC~~~~~~~n~C~i~Cs~Ll~ddI~~di~CAk~I~~~~ 99 (263)
..||+|++.+++.+++++ +|||||+...|-.-+.... .-.+++ .|....|.++-.++++.
T Consensus 22 ~~ES~~~~~a~~~~~~~~~a~GlmQi~~~t~~~~~~~~~-----~~~~~~-~dp~~ni~~g~~~L~~~ 83 (121)
T PF01464_consen 22 YQESGFNPNAVSYNSNGSGAYGLMQINPATWKDYGRKGG-----LSPDDL-FDPEDNIQAGAKYLKWL 83 (121)
T ss_dssp HHHHTTCTTTBTTBETTTTEETTTTEETTTSHHHSHTHC-----TSHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCcCCCCCCCcceeccccCCcccchhhhccc-----ccchhh-hCHHHHHHHHHHHHHHH
Confidence 389999999998653333 9999999998865432101 223333 25667788888888775
No 17
>PRK13888 conjugal transfer protein TrbN; Provisional
Probab=95.17 E-value=0.008 Score=54.16 Aligned_cols=44 Identities=16% Similarity=0.094 Sum_probs=31.2
Q ss_pred eeccCCcccccccCCCCC--CccceeccccccCCCCCCCcccCcccccccCC
Q psy6911 34 LHIEGFLTHVVPTAPANV--PEMNHINDRYWCTDADDDIKACGITCKALEDD 83 (263)
Q Consensus 34 ~~ES~fnT~a~n~~~~~s--yGIFQIns~~WC~~~~~~~n~C~i~Cs~Ll~d 83 (263)
+.||+ +..+++.|.+|+ +|++|||+.| =..-. .=+|+=++|++|
T Consensus 37 ~~ESg-~pgai~~N~NGT~DvGlMQINS~h-lp~L~----~~GI~~~~L~~d 82 (206)
T PRK13888 37 EKEGG-KPGQWVRNTNGTHDVGPMQFNTAY-LGDLA----RYGITANDVAAA 82 (206)
T ss_pred HHhCC-CCCCEEeCCCCCEEeCCcccccHh-HHHHH----HcCCCHHHhCCC
Confidence 48996 999999999998 9999999974 33211 113434567765
No 18
>PRK15470 emtA lytic murein endotransglycosylase E; Provisional
Probab=95.10 E-value=0.0064 Score=54.64 Aligned_cols=39 Identities=26% Similarity=0.209 Sum_probs=33.0
Q ss_pred hCCCCCCCcccceeeeeeccCCccccccccCCCCCceeeeeeecccc
Q psy6911 169 DNDISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDRY 215 (263)
Q Consensus 169 ~~g~~~~~l~~WvCia~~ES~~~T~ai~~~n~~Gs~dyGLFQIns~~ 215 (263)
+++++...| .-|++.||+||+.|+.+ +..+|||||....
T Consensus 49 ~y~iDp~Ll---~Aii~qES~Fnp~A~S~-----aGA~GLMQImP~T 87 (203)
T PRK15470 49 AWGVDPQLI---TAIIAIESGGNPNAVSK-----SNAIGLMQLKAST 87 (203)
T ss_pred HcCCCHHHH---HHHHHHHcCCCCCCcCC-----CCCeeeccCCHHH
Confidence 478876666 67999999999999975 7899999998873
No 19
>cd00254 LT_GEWL Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.
Probab=94.98 E-value=0.0099 Score=45.47 Aligned_cols=59 Identities=17% Similarity=0.035 Sum_probs=39.9
Q ss_pred eeccCCcccccccCCCCCCccceeccccccCCCCCCCcccCcccccccCCChHHHHHHHHHHHHhh
Q psy6911 34 LHIEGFLTHVVPTAPANVPEMNHINDRYWCTDADDDIKACGITCKALEDDDLTDDIACARRIYRQH 99 (263)
Q Consensus 34 ~~ES~fnT~a~n~~~~~syGIFQIns~~WC~~~~~~~n~C~i~Cs~Ll~ddI~~di~CAk~I~~~~ 99 (263)
..||+||..+++ +..+.+||+||+...|-.-+.... . ....-.|..+.|..+-.++...
T Consensus 9 ~~ES~~~~~a~~-~~~~a~GlmQi~~~~~~~~~~~~~----~--~~~~~~dp~~ni~~~~~~l~~~ 67 (113)
T cd00254 9 RQESGFNPNAVN-SGAGAVGLMQFMPSTARAYGVDGG----D--GADDLFDPEDNIRAGARYLKEL 67 (113)
T ss_pred HHHCCCCCCCcc-CCCCCeeeeeeCchHHHHHHHhcC----C--ChhhcCCHHHHHHHHHHHHHHH
Confidence 379999999995 223349999999999875433110 0 0112236777888888888876
No 20
>PRK11671 mltC murein transglycosylase C; Provisional
Probab=93.55 E-value=0.025 Score=54.84 Aligned_cols=38 Identities=32% Similarity=0.417 Sum_probs=31.8
Q ss_pred hCCCCCCCcccceeeeeeccCCccccccccCCCCCceeeeeeeccc
Q psy6911 169 DNDISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDR 214 (263)
Q Consensus 169 ~~g~~~~~l~~WvCia~~ES~~~T~ai~~~n~~Gs~dyGLFQIns~ 214 (263)
++|++...+ .-|++.||+|||.|+.+ +..+|||||...
T Consensus 202 ~ygvdp~LI---~AIi~qES~FnP~AvS~-----agA~GLMQImP~ 239 (359)
T PRK11671 202 KYGVDESLI---LAIMQTESSFNPYAVSR-----SDALGLMQVVQH 239 (359)
T ss_pred HcCCCHHHH---HHHHHHhcCCCCCCccC-----CCCceeeeeCHh
Confidence 478887554 56899999999999976 689999999875
No 21
>PF06737 Transglycosylas: Transglycosylase-like domain; InterPro: IPR010618 This family of proteins is very likely to act as transglycosylase enzymes related to IPR001916 from INTERPRO and IPR008258 from INTERPRO. These other families are weakly matched by this family, and include the known active site residues.; GO: 0005576 extracellular region; PDB: 1XSF_A 3EO5_A.
Probab=93.08 E-value=0.0079 Score=46.47 Aligned_cols=69 Identities=23% Similarity=0.301 Sum_probs=45.0
Q ss_pred CcccceeeeeeccCCccccccccCCCCCceeeeeeeccccccCCCC--CCCCcCCCCcccccCCChHHHHHHHHHHHHhh
Q psy6911 176 DIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDRYWCTDAD--DDIKACGITCKALEDDDLTDDIACARRIYRQH 253 (263)
Q Consensus 176 ~l~~WvCia~~ES~~~T~ai~~~n~~Gs~dyGLFQIns~~WC~~~~--~~~n~C~i~C~dLl~ddI~~di~CAk~I~~~h 253 (263)
+-.+|--||+-||+.|. ++|. |+..||.||+...-|=..|. ...+. ++ -.-..-|.=|.+|+.+
T Consensus 3 ~~~~Wd~ia~cESgGn~-~~nt----gnG~yGg~Qf~~sTW~a~Gg~~yap~~------~~--As~~eQi~~A~~l~~~- 68 (77)
T PF06737_consen 3 SASDWDAIAQCESGGNW-AINT----GNGYYGGLQFSQSTWRAYGGSGYAPRP------DQ--ASRAEQIAVAEKLYAR- 68 (77)
T ss_dssp THHHHHHHHHHHCTT-T-T-------SSSBBTTTTBBHHHHHHTTGGGT-SSC------CC--S-HHHHHHHHHHHHHH-
T ss_pred chHHHHHHHHHHcCCCC-ccCC----CCCccceeccCHHHHHHhCCCcCCCCh------hh--CCHHHHHHHHHHHHHH-
Confidence 34679999999999999 5544 67789999999988965542 01011 11 1235567889999988
Q ss_pred cccCCCCCCC
Q psy6911 254 KRQGGNGKIS 263 (263)
Q Consensus 254 ~~~~~~G~~a 263 (263)
+|+.|
T Consensus 69 -----qG~ga 73 (77)
T PF06737_consen 69 -----QGWGA 73 (77)
T ss_dssp -----HSSTT
T ss_pred -----cCCCc
Confidence 77654
No 22
>PF06737 Transglycosylas: Transglycosylase-like domain; InterPro: IPR010618 This family of proteins is very likely to act as transglycosylase enzymes related to IPR001916 from INTERPRO and IPR008258 from INTERPRO. These other families are weakly matched by this family, and include the known active site residues.; GO: 0005576 extracellular region; PDB: 1XSF_A 3EO5_A.
Probab=91.78 E-value=0.14 Score=39.61 Aligned_cols=64 Identities=14% Similarity=0.064 Sum_probs=39.4
Q ss_pred eccCCcccccccCCCCCCccceeccccccCCCCCCCcccCcccccccCCChHHHHHHHHHHHHhhcccCCCCcccccc
Q psy6911 35 HIEGFLTHVVPTAPANVPEMNHINDRYWCTDADDDIKACGITCKALEDDDLTDDIACARRIYRQHKRQGGNGKISNLV 112 (263)
Q Consensus 35 ~ES~fnT~a~n~~~~~syGIFQIns~~WC~~~~~~~n~C~i~Cs~Ll~ddI~~di~CAk~I~~~~~~~~~~G~~aW~~ 112 (263)
.||+-|- ++|+ .+|-||.||+...-|=.-+... .=+. -++. .-..-|.=|.+|+... |+.+|++
T Consensus 13 cESgGn~-~~nt-gnG~yGg~Qf~~sTW~a~Gg~~--yap~--~~~A--s~~eQi~~A~~l~~~q------G~gaWp~ 76 (77)
T PF06737_consen 13 CESGGNW-AINT-GNGYYGGLQFSQSTWRAYGGSG--YAPR--PDQA--SRAEQIAVAEKLYARQ------GWGAWPV 76 (77)
T ss_dssp HHCTT-T-T----SSSBBTTTTBBHHHHHHTTGGG--T-SS--CCCS---HHHHHHHHHHHHHHH------SSTTSTC
T ss_pred HHcCCCC-ccCC-CCCccceeccCHHHHHHhCCCc--CCCC--hhhC--CHHHHHHHHHHHHHHc------CCCcCCC
Confidence 7999999 5543 2334999999999997544310 0000 1111 2455678899999984 9999983
No 23
>PRK13864 type IV secretion system lytic transglycosylase VirB1; Provisional
Probab=89.76 E-value=0.11 Score=47.96 Aligned_cols=29 Identities=14% Similarity=0.097 Sum_probs=24.1
Q ss_pred eeccCCcccccccCCCC-----------------------C--Cccceeccccc
Q psy6911 34 LHIEGFLTHVVPTAPAN-----------------------V--PEMNHINDRYW 62 (263)
Q Consensus 34 ~~ES~fnT~a~n~~~~~-----------------------s--yGIFQIns~~W 62 (263)
..||+||+-|++.|.+| + .||.|||+++.
T Consensus 51 ~vESg~nP~AI~~N~~G~~l~~qs~~EAi~~a~~l~~~g~s~DvGLmQINs~nl 104 (245)
T PRK13864 51 KVESRFDPLAVHDNTTGETLHWQNHAQATQSVRHRLEARHSLDVGLMQINSKNF 104 (245)
T ss_pred HHhccCCCcceeecCCCCccCCCCHHHHHHHHHHHHhcCCceeeechhccHHHH
Confidence 39999999999877544 4 99999999863
No 24
>cd01021 GEWL Goose Egg White Lysozyme domain. Eukaryotic "goose-type" lysozymes (GEWL). These enzymes catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc). Members include tunicate, Japanese flounder, ostrich, and mouse.
Probab=89.51 E-value=0.17 Score=44.29 Aligned_cols=35 Identities=9% Similarity=-0.167 Sum_probs=25.9
Q ss_pred HcCCCCc------eeccCCcccccccCCC--CCCccceecccc
Q psy6911 27 KLSSKGF------LHIEGFLTHVVPTAPA--NVPEMNHINDRY 61 (263)
Q Consensus 27 ~~g~~g~------~~ES~fnT~a~n~~~~--~syGIFQIns~~ 61 (263)
+.|+|.. ..||+||+.+++.+.+ +.+||.||+...
T Consensus 41 ~y~idp~Li~Aii~~ES~f~~~a~~~~~s~~ga~GLMQi~p~t 83 (166)
T cd01021 41 KKCIDPAVIAAIISRESRAGKVLKNGWGGAGNGFGLMQVDKRS 83 (166)
T ss_pred HhCcCHHHHHHHHHHHcCCCcccccCCCCCCCCeEEeeECccc
Confidence 4466664 3899999999864422 239999999975
No 25
>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional
Probab=89.45 E-value=0.15 Score=50.75 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=33.9
Q ss_pred HHHHHHhCCCCCCCcccceeeeeeccCCccccccccCCCCCceeeeeeeccc
Q psy6911 163 LAKVLLDNDISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDR 214 (263)
Q Consensus 163 La~~L~~~g~~~~~l~~WvCia~~ES~~~T~ai~~~n~~Gs~dyGLFQIns~ 214 (263)
+.+++++.|+|... +-|+..||+||+.|+.+ ....|||||=..
T Consensus 108 i~~~~~~~~lp~~l----~~l~~~ES~f~p~A~S~-----~gA~Gl~Q~mp~ 150 (456)
T PRK10783 108 IVGQIKKRNMPMEL----VLLPIVESAFDPHATSG-----ANAAGIWQIIPS 150 (456)
T ss_pred HHHHHHHcCCCHHH----HHHHHHhcCCCCCCccC-----CCccceeeecHH
Confidence 56677789998544 34888999999999976 778999998543
No 26
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.83 E-value=0.24 Score=51.29 Aligned_cols=33 Identities=30% Similarity=0.312 Sum_probs=27.1
Q ss_pred cce-eeeeeccCCccccccccCCCCCceeeeeeeccccc
Q psy6911 179 TWL-CIARYESTFNSSAVGHMSGDGSLDHGIFQINDRYW 216 (263)
Q Consensus 179 ~Wv-Cia~~ES~~~T~ai~~~n~~Gs~dyGLFQIns~~W 216 (263)
.|| -|+.+||+|++.|+.+ ....|||||....+
T Consensus 495 ~lv~ai~rqES~f~p~a~S~-----~gA~GLMQimP~Ta 528 (644)
T PRK11619 495 SYAMAIARQESAWNPKARSP-----VGASGLMQIMPGTA 528 (644)
T ss_pred HHHHHHHHHhcCCCCCCccC-----CCCeeeeeecHHHH
Confidence 444 5999999999999965 55899999987743
No 27
>PRK10859 membrane-bound lytic transglycosylase F; Provisional
Probab=82.75 E-value=0.5 Score=46.71 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=28.6
Q ss_pred CCCcccceeeeeeccCCccccccccCCCCCceeeeeeecccc
Q psy6911 174 KDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDRY 215 (263)
Q Consensus 174 ~~~l~~WvCia~~ES~~~T~ai~~~n~~Gs~dyGLFQIns~~ 215 (263)
+.+..-...++++||+||+.|+.+ +...|||||-..-
T Consensus 300 ~~d~~ll~a~~~~ES~~~~~a~s~-----~ga~Glmq~~p~t 336 (482)
T PRK10859 300 ELDWRLLAAIAYQESHWNPQATSP-----TGVRGLMMLTRNT 336 (482)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCcC-----CCCEecceeCHHH
Confidence 333334467899999999999976 4579999998764
No 28
>PHA00368 internal virion protein D
Probab=78.06 E-value=0.87 Score=49.70 Aligned_cols=38 Identities=24% Similarity=0.285 Sum_probs=30.7
Q ss_pred hCCCCCCCcccceeeeeeccCCccccccccCCCCCceeeeeeeccc
Q psy6911 169 DNDISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDR 214 (263)
Q Consensus 169 ~~g~~~~~l~~WvCia~~ES~~~T~ai~~~n~~Gs~dyGLFQIns~ 214 (263)
++|+|...+ .-+++.||+|||.|+.+ ....|||||-..
T Consensus 21 kyGVppdLL---~ALIrQES~FNP~AvS~-----AGA~GLMQLMPa 58 (1315)
T PHA00368 21 AHGVSYDLL---RKVGWDESRFNPTAKSP-----TGPKGLMQFTKA 58 (1315)
T ss_pred HcCCCHHHH---HHHHHHcCCCCCCCEeC-----CCCEeeeeecHH
Confidence 578875443 56999999999999976 678999999754
No 29
>PRK15470 emtA lytic murein endotransglycosylase E; Provisional
Probab=74.95 E-value=1.4 Score=39.69 Aligned_cols=34 Identities=9% Similarity=-0.038 Sum_probs=25.5
Q ss_pred HHcCCCCc------eeccCCcccccccCCCCCCccceecccc
Q psy6911 26 LKLSSKGF------LHIEGFLTHVVPTAPANVPEMNHINDRY 61 (263)
Q Consensus 26 ~~~g~~g~------~~ES~fnT~a~n~~~~~syGIFQIns~~ 61 (263)
++.|+|.. ..||+||+.|+.. .|-+||.||....
T Consensus 48 ~~y~iDp~Ll~Aii~qES~Fnp~A~S~--aGA~GLMQImP~T 87 (203)
T PRK15470 48 AAWGVDPQLITAIIAIESGGNPNAVSK--SNAIGLMQLKAST 87 (203)
T ss_pred HHcCCCHHHHHHHHHHHcCCCCCCcCC--CCCeeeccCCHHH
Confidence 34566654 3899999999953 4459999998764
No 30
>PRK11671 mltC murein transglycosylase C; Provisional
Probab=68.91 E-value=3 Score=40.69 Aligned_cols=35 Identities=9% Similarity=0.007 Sum_probs=25.9
Q ss_pred HHHcCCCCc------eeccCCcccccccCCCCCCccceecccc
Q psy6911 25 VLKLSSKGF------LHIEGFLTHVVPTAPANVPEMNHINDRY 61 (263)
Q Consensus 25 l~~~g~~g~------~~ES~fnT~a~n~~~~~syGIFQIns~~ 61 (263)
-++.|++.- ..||+||+.|+.+ .|-+||.||...-
T Consensus 200 a~~ygvdp~LI~AIi~qES~FnP~AvS~--agA~GLMQImP~T 240 (359)
T PRK11671 200 SRKYGVDESLILAIMQTESSFNPYAVSR--SDALGLMQVVQHT 240 (359)
T ss_pred HHHcCCCHHHHHHHHHHhcCCCCCCccC--CCCceeeeeCHhh
Confidence 345567653 3999999999953 3459999998753
No 31
>PF05497 Destabilase: Destabilase; InterPro: IPR008597 Destabilase (3.5.1.44 from EC) is an endo-epsilon(gamma-Glu)-Lys isopeptidase, which cleaves isopeptide bonds formed by transglutaminase (Factor XIIIa) between glutamine gamma-carboxamide and the epsilon-amino group of lysine [].; GO: 0003796 lysozyme activity; PDB: 2DQA_B 3AB6_A 3AYQ_A.
Probab=67.02 E-value=0.53 Score=39.12 Aligned_cols=40 Identities=38% Similarity=0.476 Sum_probs=28.4
Q ss_pred eeeeeeccCCccccccccCCCCCceeeeeeeccccccCCCC
Q psy6911 181 LCIARYESTFNSSAVGHMSGDGSLDHGIFQINDRYWCTDAD 221 (263)
Q Consensus 181 vCia~~ES~~~T~ai~~~n~~Gs~dyGLFQIns~~WC~~~~ 221 (263)
-||.+.||+=|..+.=. +..||..-|+|||+-.||=+-++
T Consensus 7 ~CiC~~~SgC~~~~~C~-~~~~s~~CG~f~Is~~YW~Dag~ 46 (119)
T PF05497_consen 7 RCICEAESGCNMPAGCR-MDVGSLSCGPFQISWPYWQDAGK 46 (119)
T ss_dssp HHHHHHHCSS-S---EE-EETTEEEETTTTEEHHHHHHTT-
T ss_pred HHHhHHhhCCCCCCCCC-CCCCCceeeeeEecHHHHHHcCC
Confidence 47888999876666654 45689999999999999955544
No 32
>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional
Probab=61.74 E-value=4.7 Score=40.27 Aligned_cols=39 Identities=15% Similarity=0.055 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCCCc-----eeccCCcccccccCCCCCCccceeccc
Q psy6911 20 VVKKRVLKLSSKGF-----LHIEGFLTHVVPTAPANVPEMNHINDR 60 (263)
Q Consensus 20 ~la~~l~~~g~~g~-----~~ES~fnT~a~n~~~~~syGIFQIns~ 60 (263)
-+.+++++.||+.- ..||+||+.|+.+ .|-.||+||=..
T Consensus 107 ~i~~~~~~~~lp~~l~~l~~~ES~f~p~A~S~--~gA~Gl~Q~mp~ 150 (456)
T PRK10783 107 WIVGQIKKRNMPMELVLLPIVESAFDPHATSG--ANAAGIWQIIPS 150 (456)
T ss_pred HHHHHHHHcCCCHHHHHHHHHhcCCCCCCccC--CCccceeeecHH
Confidence 35778888899863 2899999999942 344999998654
No 33
>COG0741 MltE Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]
Probab=58.59 E-value=2.6 Score=37.06 Aligned_cols=30 Identities=33% Similarity=0.340 Sum_probs=25.3
Q ss_pred eeeeeeccCCccccccccCCCCCceeeeeeecccc
Q psy6911 181 LCIARYESTFNSSAVGHMSGDGSLDHGIFQINDRY 215 (263)
Q Consensus 181 vCia~~ES~~~T~ai~~~n~~Gs~dyGLFQIns~~ 215 (263)
.=|+..||+|++.++.. ....|||||-...
T Consensus 158 ~ai~~~ES~~~~~a~s~-----~ga~glmQ~~~~t 187 (296)
T COG0741 158 YAIIRQESAFNPAAVSR-----AGALGLMQGMPAT 187 (296)
T ss_pred HHHHHHHhcCCCcCccC-----CCcccchhcCchh
Confidence 44999999999999964 7889999996653
No 34
>COG4764 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.86 E-value=18 Score=32.14 Aligned_cols=48 Identities=19% Similarity=0.142 Sum_probs=35.1
Q ss_pred hCCCCCCCcccceeeeeeccCCcccccccc--------CCCCCceeeeeeeccccccCC
Q psy6911 169 DNDISKDDIATWLCIARYESTFNSSAVGHM--------SGDGSLDHGIFQINDRYWCTD 219 (263)
Q Consensus 169 ~~g~~~~~l~~WvCia~~ES~~~T~ai~~~--------n~~Gs~dyGLFQIns~~WC~~ 219 (263)
+.|+| ++--.-.++.||+|.+.|.-+. =.--|+.||-=|--+.-|-..
T Consensus 54 ~~GvP---VpVlMAtiy~ESgFk~~ArPPRtklLgfIPW~rvSsAyGysQAlDgTWa~Y 109 (197)
T COG4764 54 EYGVP---VPVLMATIYTESGFKHNARPPRTKLLGFIPWKRVSSAYGYSQALDGTWARY 109 (197)
T ss_pred HhCCC---chHHHHHHHHhhcCCCCCCCCcceeEeeeeccCccchhhhhHhhcccHHHH
Confidence 47888 4444788999999999887531 124588899999888878543
No 35
>PRK11619 lytic murein transglycosylase; Provisional
Probab=45.38 E-value=13 Score=38.73 Aligned_cols=38 Identities=5% Similarity=-0.078 Sum_probs=27.7
Q ss_pred HHHHHcCCCCc------eeccCCcccccccCCCCCCccceeccccc
Q psy6911 23 KRVLKLSSKGF------LHIEGFLTHVVPTAPANVPEMNHINDRYW 62 (263)
Q Consensus 23 ~~l~~~g~~g~------~~ES~fnT~a~n~~~~~syGIFQIns~~W 62 (263)
+.-++.|++.- ..||+||+.|+. +.|-.||.||....+
T Consensus 485 ~~a~~~~v~~~lv~ai~rqES~f~p~a~S--~~gA~GLMQimP~Ta 528 (644)
T PRK11619 485 RYTSGKGIPQSYAMAIARQESAWNPKARS--PVGASGLMQIMPGTA 528 (644)
T ss_pred HHHHHcCCCHHHHHHHHHHhcCCCCCCcc--CCCCeeeeeecHHHH
Confidence 33455677754 389999999995 234599999998654
No 36
>PRK10859 membrane-bound lytic transglycosylase F; Provisional
Probab=38.08 E-value=15 Score=36.39 Aligned_cols=25 Identities=4% Similarity=0.045 Sum_probs=20.6
Q ss_pred eccCCcccccccCCCCCCccceecccc
Q psy6911 35 HIEGFLTHVVPTAPANVPEMNHINDRY 61 (263)
Q Consensus 35 ~ES~fnT~a~n~~~~~syGIFQIns~~ 61 (263)
.||+||+.|+.+ .|-.||.||...-
T Consensus 312 ~ES~~~~~a~s~--~ga~Glmq~~p~t 336 (482)
T PRK10859 312 QESHWNPQATSP--TGVRGLMMLTRNT 336 (482)
T ss_pred HhCCCCCCCCcC--CCCEecceeCHHH
Confidence 899999999953 4559999999654
No 37
>KOG4824|consensus
Probab=31.44 E-value=54 Score=30.04 Aligned_cols=66 Identities=11% Similarity=0.180 Sum_probs=43.2
Q ss_pred HHHhhcccccccccchHHHHHHHhCCCCCCCcccceeeeeeccCCc------cccccccCCCCCceeeeeeec
Q psy6911 146 TNSFFSLARCKTFRPCELAKVLLDNDISKDDIATWLCIARYESTFN------SSAVGHMSGDGSLDHGIFQIN 212 (263)
Q Consensus 146 ~~~l~~~~~akv~~rCeLa~~L~~~g~~~~~l~~WvCia~~ES~~~------T~ai~~~n~~Gs~dyGLFQIn 212 (263)
++++.+..+|..|++|+=....++..+.+| +..|.=+|..-++|. |.+....|.||.-..=++-|+
T Consensus 18 ~L~~~a~gqa~~lg~cpnypv~knFnv~Ry-lGrWYEVas~p~~fe~~~gctt~~y~~~nkngkI~Vln~~v~ 89 (224)
T KOG4824|consen 18 ILLLSAAGQAIALGECPNYPVAKNFNVERY-LGRWYEVASFPRGFEGKGGCTTGAYTFDNKNGKIHVLNECVH 89 (224)
T ss_pred HHHhhcccceEeeccCCCCccccCCChhhh-cceeeeeeccccccccCCCceeeeeEecCCCceEEEeeeeee
Confidence 333446689999999987766666555554 678887776665554 334444456776666666665
No 38
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=29.65 E-value=36 Score=27.13 Aligned_cols=6 Identities=0% Similarity=-0.047 Sum_probs=2.5
Q ss_pred hHHHHH
Q psy6911 136 IKSIAI 141 (263)
Q Consensus 136 k~~~~~ 141 (263)
|++++|
T Consensus 4 K~~llL 9 (95)
T PF07172_consen 4 KAFLLL 9 (95)
T ss_pred hHHHHH
Confidence 444433
No 39
>PF05497 Destabilase: Destabilase; InterPro: IPR008597 Destabilase (3.5.1.44 from EC) is an endo-epsilon(gamma-Glu)-Lys isopeptidase, which cleaves isopeptide bonds formed by transglutaminase (Factor XIIIa) between glutamine gamma-carboxamide and the epsilon-amino group of lysine [].; GO: 0003796 lysozyme activity; PDB: 2DQA_B 3AB6_A 3AYQ_A.
Probab=29.07 E-value=10 Score=31.60 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=29.5
Q ss_pred eccCCcccccccCCCCC--CccceeccccccCCCCCCCcccCcccccccCCCh---HHHHHHHHHHHHhh
Q psy6911 35 HIEGFLTHVVPTAPANV--PEMNHINDRYWCTDADDDIKACGITCKALEDDDL---TDDIACARRIYRQH 99 (263)
Q Consensus 35 ~ES~fnT~a~n~~~~~s--yGIFQIns~~WC~~~~~~~n~C~i~Cs~Ll~ddI---~~di~CAk~I~~~~ 99 (263)
.|||=|..+.=....++ -|+|||+-.||=+-+++ +. +.+.++- ..|..||.++++..
T Consensus 12 ~~SgC~~~~~C~~~~~s~~CG~f~Is~~YW~Dag~~-g~-------~~~~~a~~~Ca~d~~Ca~~tV~~Y 73 (119)
T PF05497_consen 12 AESGCNMPAGCRMDVGSLSCGPFQISWPYWQDAGKP-GD-------SPSRDAYERCANDPYCAERTVQNY 73 (119)
T ss_dssp HHCSS-S---EEEETTEEEETTTTEEHHHHHHTT---SS-------S-----HHHHHTSHHHHHHHHHHH
T ss_pred HhhCCCCCCCCCCCCCCceeeeeEecHHHHHHcCCC-CC-------CchhhhHHHHcCCHHHHHHHHHHH
Confidence 35665555553333344 99999999999554442 11 1111111 24678999888864
No 40
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane]
Probab=26.72 E-value=15 Score=36.67 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=25.1
Q ss_pred ccee---eeeeccCCccccccccCCCCCceeeeeeeccc
Q psy6911 179 TWLC---IARYESTFNSSAVGHMSGDGSLDHGIFQINDR 214 (263)
Q Consensus 179 ~WvC---ia~~ES~~~T~ai~~~n~~Gs~dyGLFQIns~ 214 (263)
+|.- ||++||.+||.|..+ +.--|||||-..
T Consensus 283 dWrlLAAiaYQESHwnP~Atsp-----tGvrGlMmLT~~ 316 (473)
T COG4623 283 DWRLLAAIAYQESHWNPQATSP-----TGVRGLMMLTKA 316 (473)
T ss_pred cHHHHHHHHHHHhccCCCCCCC-----ccchhhhhhhHH
Confidence 3765 899999999999976 556799998654
No 41
>PHA00368 internal virion protein D
Probab=26.33 E-value=39 Score=37.61 Aligned_cols=39 Identities=5% Similarity=-0.108 Sum_probs=28.5
Q ss_pred HHHHHHHcCCCCc------eeccCCcccccccCCCCCCccceecccc
Q psy6911 21 VKKRVLKLSSKGF------LHIEGFLTHVVPTAPANVPEMNHINDRY 61 (263)
Q Consensus 21 la~~l~~~g~~g~------~~ES~fnT~a~n~~~~~syGIFQIns~~ 61 (263)
+.+..++.|++.- ..||+||+.|+.+ .|-.||+||-..-
T Consensus 15 IekAAqkyGVppdLL~ALIrQES~FNP~AvS~--AGA~GLMQLMPaT 59 (1315)
T PHA00368 15 FQKAADAHGVSYDLLRKVGWDESRFNPTAKSP--TGPKGLMQFTKAT 59 (1315)
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCCCCCEeC--CCCEeeeeecHHH
Confidence 4455667788764 3899999999952 3449999997543
No 42
>COG3953 SLT domain proteins [General function prediction only]
Probab=22.06 E-value=19 Score=33.32 Aligned_cols=40 Identities=25% Similarity=0.204 Sum_probs=27.1
Q ss_pred CCcccceeeeeeccCCcccccccc-----CCCCCceeeeeeeccc
Q psy6911 175 DDIATWLCIARYESTFNSSAVGHM-----SGDGSLDHGIFQINDR 214 (263)
Q Consensus 175 ~~l~~WvCia~~ES~~~T~ai~~~-----n~~Gs~dyGLFQIns~ 214 (263)
.-++--+=+|.+||+.++.+++.. +--|.-.-||||+=++
T Consensus 13 ~w~~~l~~ia~~ESgg~~~aing~~wdiNai~g~psrGLmQ~i~s 57 (235)
T COG3953 13 GWFAGLMRIASRESGGNPNAINGILWDINAIPGDPSRGLMQTIPS 57 (235)
T ss_pred hhhhhhhhhhhhhcCCCcccccccccccccccCchhhhHHHHhHH
Confidence 334455669999999999999820 1223344899995554
Done!