RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6911
(263 letters)
>1iiz_A Lysozyme; hydrolase; 2.40A {Antheraea mylitta} SCOP: d.2.1.2 PDB:
1gd6_A
Length = 120
Score = 116 bits (292), Expect = 3e-33
Identities = 33/98 (33%), Positives = 54/98 (55%)
Query: 156 KTFRPCELAKVLLDNDISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDRY 215
K F C L L ++ + W+C+ ES + + +++ +GS D+G+FQIND+Y
Sbjct: 1 KRFTRCGLVNELRKQGFDENLMRDWVCLVENESARYTDKIANVNKNGSRDYGLFQINDKY 60
Query: 216 WCTDADDDIKACGITCKALEDDDLTDDIACARRIYRQH 253
WC+ K C +TC L DD+T CA++IY++
Sbjct: 61 WCSKGSTPGKDCNVTCSQLLTDDITVASTCAKKIYKRT 98
Score = 54.2 bits (130), Expect = 9e-10
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 56 HINDRYWCTDADDDIKACGITCKALEDDDLTDDIACARRIYRQH 99
IND+YWC+ K C +TC L DD+T CA++IY++
Sbjct: 55 QINDKYWCSKGSTPGKDCNVTCSQLLTDDITVASTCAKKIYKRT 98
>2fbd_A Lysozyme 1; digestive lysozime, hydrolase; HET: PEG; 1.90A {Musca
domestica} PDB: 2h5z_A* 3cb7_A
Length = 122
Score = 111 bits (280), Expect = 2e-31
Identities = 37/100 (37%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
Query: 156 KTFRPCELAKVLLDNDISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDRY 215
KTF C LA+ + + K ++ W CIA +ES++ ++ VG + +GS D+GIFQIN+ Y
Sbjct: 1 KTFTRCSLAREMYALGVPKSELPQWTCIAEHESSYRTNVVGPTNSNGSNDYGIFQINNYY 60
Query: 216 WCTDADDD--IKACGITCKALEDDDLTDDIACARRIYRQH 253
WC ++ C ++C AL D++++ + CAR+I Q
Sbjct: 61 WCQPSNGRFSYNECHLSCDALLTDNISNSVTCARKIKSQQ 100
Score = 50.8 bits (121), Expect = 2e-08
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 56 HINDRYWCTDADDD--IKACGITCKALEDDDLTDDIACARRIYRQH 99
IN+ YWC ++ C ++C AL D++++ + CAR+I Q
Sbjct: 55 QINNYYWCQPSNGRFSYNECHLSCDALLTDNISNSVTCARKIKSQQ 100
>2z2f_A Lysozyme C-2; stomach lysozyme, 1,4-beta-N-acetylmuramidase C,
bacteriolytic enzyme, hydrolase; 1.50A {Bos taurus}
Length = 129
Score = 107 bits (267), Expect = 2e-29
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 156 KTFRPCELAKVLLDNDI---SKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQIN 212
K F CELA+ L + +A WLC+ ++ES++N+ A + S D+GIFQIN
Sbjct: 1 KVFERCELARTLKKLGLDGYKGVSLANWLCLTKWESSYNTKATNYNPSSESTDYGIFQIN 60
Query: 213 DRYWCTDADDDIK--ACGITCKALEDDDLTDDIACARRIYRQH 253
++WC D C ++C L ++D+ +ACA+ I +
Sbjct: 61 SKWWCNDGKTPNAVDGCHVSCSELMENDIAKAVACAKHIVSEQ 103
Score = 51.6 bits (123), Expect = 1e-08
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 56 HINDRYWCTDADDDIK--ACGITCKALEDDDLTDDIACARRIYRQH 99
IN ++WC D C ++C L ++D+ +ACA+ I +
Sbjct: 58 QINSKWWCNDGKTPNAVDGCHVSCSELMENDIAKAVACAKHIVSEQ 103
>2gv0_A Lysozyme C; hydrolase; 1.90A {Pelodiscus sinensis}
Length = 131
Score = 106 bits (265), Expect = 4e-29
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 156 KTFRPCELAKVLLDNDI---SKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQIN 212
K + CELA+ + + + W+C A++ES FN++A + GD S D+GI QIN
Sbjct: 2 KIYEQCELAREFKRHGMDGYHGYSLGDWVCTAKHESNFNTAATNYNRGDQSTDYGILQIN 61
Query: 213 DRYWCTDADDD--IKACGITCKALEDDDLTDDIACARRIYRQHK 254
R+WC D ACGI C L D+T + CA+RI R
Sbjct: 62 SRWWCNDGKTPKAKNACGIECSELLKADITAAVNCAKRIVRDPN 105
Score = 50.8 bits (121), Expect = 2e-08
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 56 HINDRYWCTDADDD--IKACGITCKALEDDDLTDDIACARRIYRQHK 100
IN R+WC D ACGI C L D+T + CA+RI R
Sbjct: 59 QINSRWWCNDGKTPKAKNACGIECSELLKADITAAVNCAKRIVRDPN 105
>2nwd_X Lysozyme C; native chemical ligation, chemical protein synthesis,
convergent synthesis, hydrolase; 1.04A {Synthetic} SCOP:
d.2.1.2 PDB: 1iwu_A 1iwv_A 1iww_A 1iwx_A 1iwy_A 1iwz_A
1iy3_A 1iy4_A 1iwt_A 1jwr_A 1lz1_A 1lzr_A* 1lzs_A*
1op9_B 1re2_A* 1rem_A* 1rex_A 1rey_A* 1rez_A* 1jsf_A ...
Length = 130
Score = 105 bits (264), Expect = 5e-29
Identities = 42/104 (40%), Positives = 63/104 (60%), Gaps = 5/104 (4%)
Query: 156 KTFRPCELAKVLLD---NDISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQIN 212
K F CELA+ L + +A W+C+A++ES +N+ A + +GD S D+GIFQIN
Sbjct: 1 KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQIN 60
Query: 213 DRYWCTDADDD--IKACGITCKALEDDDLTDDIACARRIYRQHK 254
RYWC D + AC ++C AL D++ D +ACA+R+ R +
Sbjct: 61 SRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQ 104
Score = 52.0 bits (124), Expect = 7e-09
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 56 HINDRYWCTDADDD--IKACGITCKALEDDDLTDDIACARRIYRQHK 100
IN RYWC D + AC ++C AL D++ D +ACA+R+ R +
Sbjct: 58 QINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQ 104
>1qqy_A Lysozyme C; APO-type protein, calcium binding lysozyme, enzyme,
hydrolase; 1.85A {Canis lupus familiaris} SCOP: d.2.1.2
PDB: 1el1_A 1i56_A 2cwi_A 2z2e_A 2eql_A
Length = 130
Score = 104 bits (261), Expect = 1e-28
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 156 KTFRPCELAKVLLDNDI---SKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQIN 212
K F CELA+ L + +A W+C+A YES FN+ A + +GS D+GIFQ+N
Sbjct: 2 KIFSKCELARKLKSMGMDGFHGYSLANWVCMAEYESNFNTQAFNGRNSNGSSDYGIFQLN 61
Query: 213 DRYWCTDADDDIK-ACGITCKALEDDDLTDDIACARRIYRQHK 254
++WC AC I C DD++ DDIACA+R+ +
Sbjct: 62 SKWWCKSNSHSSANACNIMCSKFLDDNIDDDIACAKRVVKDPN 104
Score = 50.5 bits (120), Expect = 2e-08
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 56 HINDRYWCTDADDDIK-ACGITCKALEDDDLTDDIACARRIYRQHK 100
+N ++WC AC I C DD++ DDIACA+R+ +
Sbjct: 59 QLNSKWWCKSNSHSSANACNIMCSKFLDDNIDDDIACAKRVVKDPN 104
>1hml_A Alpha-lactalbumin; calcium-binding protein; 1.70A {Homo sapiens}
SCOP: d.2.1.2
Length = 142
Score = 104 bits (261), Expect = 2e-28
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 137 KSIAILFCVTNSFFSLARCKTFRPCELAKVLLDND-ISKDDIATWLCIARYESTFNSSAV 195
+ LF V F K F CEL+++L D D + +C + S +++ A+
Sbjct: 2 RFFVPLFLVG-ILFPAILAKQFTKCELSQLLKDIDGYGGIALPELICTMFHTSGYDTQAI 60
Query: 196 GHMSGDGSLDHGIFQINDRYWCTDADDD--IKACGITCKALEDDDLTDDIACARRIYRQH 253
+ S ++G+FQI+++ WC + C I+C DDD+TDDI CA++I
Sbjct: 61 VE--NNESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILDIK 118
Score = 55.5 bits (133), Expect = 5e-10
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 35 HIEGFLTH-VVPTAPANVPEMNHINDRYWCTDADDD--IKACGITCKALEDDDLTDDIAC 91
H G+ T +V + + I+++ WC + C I+C DDD+TDDI C
Sbjct: 51 HTSGYDTQAIVENNESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMC 110
Query: 92 ARRIYRQH 99
A++I
Sbjct: 111 AKKILDIK 118
>3b72_A Lysozyme C; hen egg-white lysozyme, protein-SDS complex, MPD,
allergen, antimicrobial, bacteriolytic enzyme
glycosidase, hydrolase; 1.50A {Gallus gallus} SCOP:
d.2.1.2 PDB: 3b6l_A 1lsy_A 1lsz_A*
Length = 147
Score = 103 bits (258), Expect = 5e-28
Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 136 IKSIAILFCVTNSFFSLARCKTFRPCELAKVLLDNDISKD---DIATWLCIARYESTFNS 192
++S+ IL A K F CELA + + + + W+C A++ES FN+
Sbjct: 1 MRSLLILVLC--FLPLAALGKVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNT 58
Query: 193 SAVGHMSGDGSLDHGIFQINDRYWCTDADDDIK--ACGITCKALEDDDLTDDIACARRIY 250
A + DGS D+GI QIN R+WC D C I C AL D+T + CA++I
Sbjct: 59 QATNR-NTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIV 117
Query: 251 RQHK 254
Sbjct: 118 SDGN 121
Score = 50.9 bits (121), Expect = 3e-08
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 56 HINDRYWCTDADDDIK--ACGITCKALEDDDLTDDIACARRIYRQHK 100
IN R+WC D C I C AL D+T + CA++I
Sbjct: 75 QINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGN 121
>1lsg_A Hen egg white lysozyme; fibrinogen, hybrid protein; 2.40A {Gallus
gallus} SCOP: d.2.1.2
Length = 144
Score = 102 bits (254), Expect = 2e-27
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 156 KTFRPCELAKVLLDNDISKD---DIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQIN 212
K F CELA + + + + W+C A++ES FN+ A + DGS D+GI QIN
Sbjct: 2 KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNR-NTDGSTDYGILQIN 60
Query: 213 DRYWCTDADDDIK--ACGITCKALEDDDLTDDIACARRIYRQHK 254
R+WC D C I C AL D+T + CA++I
Sbjct: 61 SRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGN 104
Score = 50.1 bits (119), Expect = 4e-08
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 56 HINDRYWCTDADDDIK--ACGITCKALEDDDLTDDIACARRIYRQHK 100
IN R+WC D C I C AL D+T + CA++I
Sbjct: 58 QINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGN 104
>1jug_A Lysozyme; calcium-binding; 1.90A {Tachyglossus aculeatus} SCOP:
d.2.1.2
Length = 125
Score = 101 bits (253), Expect = 2e-27
Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 156 KTFRPCELAKVLLDND---ISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQIN 212
K + EL K L+ + W+C A +ES++N+ A H + DGS D+GI QIN
Sbjct: 1 KILKKQELCKNLVAQGMNGYQHITLPNWVCTAFHESSYNTRATNH-NTDGSTDYGILQIN 59
Query: 213 DRYWCTDADDD--IKACGITCKALEDDDLTDDIACARRIYRQHK 254
RYWC D AC I+C L DDD+TDD+ CA++I + K
Sbjct: 60 SRYWCHDGKTPGSKNACNISCSKLLDDDITDDLKCAKKIAGEAK 103
Score = 51.6 bits (123), Expect = 8e-09
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 56 HINDRYWCTDADDD--IKACGITCKALEDDDLTDDIACARRIYRQHK 100
IN RYWC D AC I+C L DDD+TDD+ CA++I + K
Sbjct: 57 QINSRYWCHDGKTPGSKNACNISCSKLLDDDITDDLKCAKKIAGEAK 103
>1b9o_A Protein (alpha-lactalbumin); calcium-binding protein, high
resolution; 1.15A {Homo sapiens} SCOP: d.2.1.2 PDB:
1a4v_A 1alc_A 1hmk_A 1hfy_A 1f6r_A 1f6s_A 2g4n_A 1fkq_A
1fkv_A 1hfz_A 1hfx_A
Length = 123
Score = 100 bits (250), Expect = 5e-27
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 156 KTFRPCELAKVLLDND-ISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDR 214
K F CEL+++L D D + +C + S +++ A+ D S ++G+FQI+++
Sbjct: 1 KQFTKCELSQLLKDIDGYGGIALPELICTMFHTSGYDTQAIVE--NDESTEYGLFQISNK 58
Query: 215 YWCTDADDD--IKACGITCKALEDDDLTDDIACARRIYRQH 253
WC + C I+C DDD+TDDI CA++I
Sbjct: 59 LWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILDIK 99
Score = 53.5 bits (128), Expect = 2e-09
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 35 HIEGFLTH-VVPTAPANVPEMNHINDRYWCTDADDD--IKACGITCKALEDDDLTDDIAC 91
H G+ T +V + + I+++ WC + C I+C DDD+TDDI C
Sbjct: 32 HTSGYDTQAIVENDESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMC 91
Query: 92 ARRIYRQH 99
A++I
Sbjct: 92 AKKILDIK 99
>2vb1_A Lysozyme C; antimicrobial, triclinic HEWL, atomic resolution,
allergen, hydrolase, glycosidase, bacteriolytic enzyme;
HET: EDO; 0.65A {Gallus gallus} SCOP: d.2.1.2 PDB:
194l_A 1aki_A 1azf_A 1b0d_A* 1b2k_A 1bgi_A 1bhz_A 1bvk_C
1bvx_A 1bwh_A 1bwi_A 1bwj_A 1c08_C 1c10_A 1dpw_A 1dpx_A
1dqj_C 1e8l_A 1f0w_A 1f10_A ...
Length = 129
Score = 100 bits (250), Expect = 6e-27
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 156 KTFRPCELAKVLLDNDISKD---DIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQIN 212
K F CELA + + + + W+C A++ES FN+ A + DGS D+GI QIN
Sbjct: 1 KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNR-NTDGSTDYGILQIN 59
Query: 213 DRYWCTDADDD--IKACGITCKALEDDDLTDDIACARRIYRQHK 254
R+WC D C I C AL D+T + CA++I
Sbjct: 60 SRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGN 103
Score = 50.4 bits (120), Expect = 3e-08
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 56 HINDRYWCTDADDD--IKACGITCKALEDDDLTDDIACARRIYRQHK 100
IN R+WC D C I C AL D+T + CA++I
Sbjct: 57 QINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGN 103
>1lmq_A Lysozyme; hydrolase (O-glycosyl); HET: NAG NDG; 1.60A {Oncorhynchus
mykiss} SCOP: d.2.1.2 PDB: 1bb7_A* 1lmc_A* 1bb6_A
1lmo_A* 1lmp_A* 1lmn_A*
Length = 129
Score = 99.8 bits (248), Expect = 1e-26
Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 156 KTFRPCELAKVLLDND---ISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQIN 212
K + CELA+ L + + + + W+C++++ES++N+ A + DGS D+GIFQIN
Sbjct: 1 KVYDRCELARALKASGMDGYAGNSLPNWVCLSKWESSYNTQATNR-NTDGSTDYGIFQIN 59
Query: 213 DRYWCTDADDD--IKACGITCKALEDDDLTDDIACARRIYRQHK 254
RYWC D CGI C L DDLT I CA+R+
Sbjct: 60 SRYWCDDGRTPGAKNVCGIRCSQLLTDDLTVAIRCAKRVVLDPN 103
Score = 49.3 bits (117), Expect = 6e-08
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 56 HINDRYWCTDADDD--IKACGITCKALEDDDLTDDIACARRIYRQHK 100
IN RYWC D CGI C L DDLT I CA+R+
Sbjct: 57 QINSRYWCDDGRTPGAKNVCGIRCSQLLTDDLTVAIRCAKRVVLDPN 103
>1yro_A Alpha-lactalbumin; Arg228Lys mutation, UDP-GAL complex, transferase
activator/transferase complex; HET: GDU UDP MES PG4;
1.90A {Mus musculus} SCOP: d.2.1.2 PDB: 1nhe_A* 1nkh_A*
1nmm_A* 1nqi_A* 1nwg_A* 1o23_A* 1oqm_A* 1pzy_A* 1nf5_A*
2fyc_A* 2fyd_A*
Length = 123
Score = 99.3 bits (247), Expect = 1e-26
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 158 FRPCELAKVLLDND-ISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDRYW 216
C+++ + D D + W C+ + S +++ AV + +GS ++G+FQI+DR+W
Sbjct: 3 LTKCKVSHAIKDIDGYQGISLLEWACVLFHTSGYDTQAVVN--DNGSTEYGLFQISDRFW 60
Query: 217 CTDADDD--IKACGITCKALEDDDLTDDIACARRIYRQH 253
C ++ CGI+C L DD+L DDIACA++I
Sbjct: 61 CKSSEFPESENICGISCDKLLDDELDDDIACAKKILAIK 99
Score = 52.0 bits (124), Expect = 6e-09
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 35 HIEGFLTH-VVPTAPANVPEMNHINDRYWCTDADDD--IKACGITCKALEDDDLTDDIAC 91
H G+ T VV + + I+DR+WC ++ CGI+C L DD+L DDIAC
Sbjct: 32 HTSGYDTQAVVNDNGSTEYGLFQISDRFWCKSSEFPESENICGISCDKLLDDELDDDIAC 91
Query: 92 ARRIYRQH 99
A++I
Sbjct: 92 AKKILAIK 99
>2goi_A Sperm lysozyme-like protein 1; mouse SLLP1, MSLLP1, sperm C-type
lysozyme-like protein 1, acrosomal sperm protein,
sperm-egg binding, fertilization; 2.30A {Mus musculus}
Length = 138
Score = 99.4 bits (247), Expect = 2e-26
Identities = 41/103 (39%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Query: 156 KTFRPCELAKVLLDNDISK---DDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQIN 212
K F CELAK + D + ++A W+C+A Y S FN++AV H DGS ++GIFQI+
Sbjct: 3 KVFSRCELAKEMHDFGLDGYRGYNLADWVCLAYYTSGFNTNAVDH-EADGSTNNGIFQIS 61
Query: 213 DRYWCTDADDDIK-ACGITCKALEDDDLTDDIACARRIYRQHK 254
R WC + C I C L ++DL D I CA +I ++
Sbjct: 62 SRRWCRTLASNGPNLCRIYCTDLLNNDLKDSIVCAMKIVQEPL 104
Score = 50.1 bits (119), Expect = 5e-08
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 56 HINDRYWCTDADDDIK-ACGITCKALEDDDLTDDIACARRIYRQHK 100
I+ R WC + C I C L ++DL D I CA +I ++
Sbjct: 59 QISSRRWCRTLASNGPNLCRIYCTDLLNNDLKDSIVCAMKIVQEPL 104
>2dqa_A Lysozyme; enzyme, substrate complex, hydrolase; HET: NAG BGC; 1.60A
{Tapes japonica}
Length = 124
Score = 31.8 bits (72), Expect = 0.067
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 15/73 (20%)
Query: 182 CIARYESTFNSSAVGHMSGDGSLDHGIFQINDRYW--CTDADDDIKACGITCKALEDDDL 239
C+ + ES M GSL G FQI YW C D K+C
Sbjct: 14 CMCKLESGGCKPIGCRMD-VGSLSCGYFQIKQPYWIDCGKPGKDWKSC------------ 60
Query: 240 TDDIACARRIYRQ 252
++DI C+ + +Q
Sbjct: 61 SNDINCSSKCVQQ 73
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.27
Identities = 28/234 (11%), Positives = 63/234 (26%), Gaps = 81/234 (34%)
Query: 67 DD-----DIKACGITCKAL---EDDDLTDDIACARRIY-RQHKRQGGNGKISNLVQISQL 117
+ A ++CK L +TD ++ A + S L
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK---SLL 307
Query: 118 NKYSTNGQYKPKPLPKKMIKSIAILFCVTNSFFSLARCKTFRPCELAKVLLDNDISKDDI 177
KY +P+ LP++++ + + +A+ + +D +
Sbjct: 308 LKYLDC---RPQDLPREVLTTNPRRLSI-----------------IAESI------RDGL 341
Query: 178 ATWLCIARYESTFNSSAVGHMSGDGSLDH-------------GIFQIN--------DRYW 216
ATW ++ N + + + SL+ +F + W
Sbjct: 342 ATW---DNWK-HVNCDKLTTII-ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 217 CTDADDDIKACGITCK-----ALEDD---------DLTDDIACARRIYRQ-HKR 255
D+ + K +E + ++ H+
Sbjct: 397 FDVIKSDVMV--VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 30.4 bits (68), Expect = 0.45
Identities = 8/58 (13%), Positives = 18/58 (31%)
Query: 91 CARRIYRQHKRQGGNGKISNLVQISQLNKYSTNGQYKPKPLPKKMIKSIAILFCVTNS 148
R R R+ ++ + +Y P +K+ + + V N+
Sbjct: 78 STTRKERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANA 135
>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, late
protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB:
3csz_A* 3csr_A* 3ct0_A* 3ct1_A*
Length = 159
Score = 28.8 bits (64), Expect = 1.2
Identities = 16/64 (25%), Positives = 20/64 (31%), Gaps = 5/64 (7%)
Query: 167 LLDNDISKDDIATWLCIARYESTFNSSAV-GHMSGDGSLDHGIFQINDRY----WCTDAD 221
L N +K I L + EST N G+ SL G+ Q W
Sbjct: 25 LSSNGWTKQAICGMLGNMQSESTINPGLWQNLDEGNTSLGFGLVQWTPASNYINWANSQG 84
Query: 222 DDIK 225
K
Sbjct: 85 LPYK 88
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 27.0 bits (59), Expect = 6.2
Identities = 8/58 (13%), Positives = 18/58 (31%)
Query: 91 CARRIYRQHKRQGGNGKISNLVQISQLNKYSTNGQYKPKPLPKKMIKSIAILFCVTNS 148
R R R+ ++ + +Y P +K+ + + V N+
Sbjct: 163 STTRKERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANA 220
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.435
Gapped
Lambda K H
0.267 0.0560 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,177,303
Number of extensions: 247700
Number of successful extensions: 593
Number of sequences better than 10.0: 1
Number of HSP's gapped: 542
Number of HSP's successfully gapped: 43
Length of query: 263
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 171
Effective length of database: 4,133,061
Effective search space: 706753431
Effective search space used: 706753431
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.7 bits)