RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6911
(263 letters)
>d1gd6a_ d.2.1.2 (A:) Lysozyme {Silkworm (Bombyx mori) [TaxId:
7091]}
Length = 119
Score = 121 bits (306), Expect = 8e-36
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 156 KTFRPCELAKVLLDNDISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDRY 215
KTF C L L + ++ + W+C+ +ES+ ++S +GS D+G+FQINDRY
Sbjct: 1 KTFTRCGLVHELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNR-NGSKDYGLFQINDRY 59
Query: 216 WCTDADDDIKACGITCKALEDDDLTDDIACARRIYRQH 253
WC+ K C + C L DD+T CA++IY++H
Sbjct: 60 WCSKGASPGKDCNVKCSDLLTDDITKAAKCAKKIYKRH 97
Score = 61.8 bits (150), Expect = 6e-13
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 57 INDRYWCTDADDDIKACGITCKALEDDDLTDDIACARRIYRQH 99
INDRYWC+ K C + C L DD+T CA++IY++H
Sbjct: 55 INDRYWCSKGASPGKDCNVKCSDLLTDDITKAAKCAKKIYKRH 97
>d1b9oa_ d.2.1.2 (A:) alpha-Lactalbumin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 123
Score = 115 bits (290), Expect = 2e-33
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 156 KTFRPCELAKVLLDND-ISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDR 214
K F CEL+++L D D + +C + S +++ A+ D S ++G+FQI+++
Sbjct: 1 KQFTKCELSQLLKDIDGYGGIALPELICTMFHTSGYDTQAIVE--NDESTEYGLFQISNK 58
Query: 215 YWCTDADDDIK--ACGITCKALEDDDLTDDIACARRIYRQH 253
WC + C I+C DDD+TDDI CA++I
Sbjct: 59 LWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILDIK 99
Score = 58.7 bits (142), Expect = 8e-12
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 35 HIEGFLTHVVPTAPANV-PEMNHINDRYWCTDADDDIK--ACGITCKALEDDDLTDDIAC 91
H G+ T + + + I+++ WC + C I+C DDD+TDDI C
Sbjct: 32 HTSGYDTQAIVENDESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMC 91
Query: 92 ARRIYRQH 99
A++I
Sbjct: 92 AKKILDIK 99
>d2nwdx1 d.2.1.2 (X:1-130) Lysozyme {Human (Homo sapiens) [TaxId:
9606]}
Length = 130
Score = 114 bits (287), Expect = 7e-33
Identities = 42/104 (40%), Positives = 63/104 (60%), Gaps = 5/104 (4%)
Query: 156 KTFRPCELAKVLLD---NDISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQIN 212
K F CELA+ L + +A W+C+A++ES +N+ A + +GD S D+GIFQIN
Sbjct: 1 KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQIN 60
Query: 213 DRYWCTDADDD--IKACGITCKALEDDDLTDDIACARRIYRQHK 254
RYWC D + AC ++C AL D++ D +ACA+R+ R +
Sbjct: 61 SRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQ 104
Score = 57.2 bits (138), Expect = 3e-11
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 35 HIEGFLTHVVPTAPANV---PEMNHINDRYWCTDADDD--IKACGITCKALEDDDLTDDI 89
G+ T + + IN RYWC D + AC ++C AL D++ D +
Sbjct: 34 WESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAV 93
Query: 90 ACARRIYRQHK 100
ACA+R+ R +
Sbjct: 94 ACAKRVVRDPQ 104
>d1qqya_ d.2.1.2 (A:) Lysozyme {Dog (Canis familiaris), milk [TaxId:
9615]}
Length = 130
Score = 113 bits (284), Expect = 2e-32
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 156 KTFRPCELAKVLLD---NDISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQIN 212
K F CELA+ L + +A W+C+A YES FN+ A + +GS D+GIFQ+N
Sbjct: 2 KIFSKCELARKLKSMGMDGFHGYSLANWVCMAEYESNFNTQAFNGRNSNGSSDYGIFQLN 61
Query: 213 DRYWCTDAD-DDIKACGITCKALEDDDLTDDIACARRIYRQHK 254
++WC AC I C DD++ DDIACA+R+ +
Sbjct: 62 SKWWCKSNSHSSANACNIMCSKFLDDNIDDDIACAKRVVKDPN 104
Score = 55.3 bits (133), Expect = 2e-10
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 57 INDRYWCTDAD-DDIKACGITCKALEDDDLTDDIACARRIYRQHK 100
+N ++WC AC I C DD++ DDIACA+R+ +
Sbjct: 60 LNSKWWCKSNSHSSANACNIMCSKFLDDNIDDDIACAKRVVKDPN 104
>d1hfxa_ d.2.1.2 (A:) alpha-Lactalbumin {Guinea pig (Cavia
porcellus) [TaxId: 10141]}
Length = 123
Score = 111 bits (280), Expect = 6e-32
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 156 KTFRPCELAKVLLDND-ISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDR 214
K C L+ L D + WLCI + S +++ A+ ++G+FQIND+
Sbjct: 1 KQLTKCALSHELNDLAGYRDITLPEWLCIIFHISGYDTQAIVK--NSDHKEYGLFQINDK 58
Query: 215 YWCTDADDD--IKACGITCKALEDDDLTDDIACARRIYRQH 253
+C + C I+C L DDDLTDDI C ++I
Sbjct: 59 DFCESSTTVQSRNICDISCDKLLDDDLTDDIMCVKKILDIK 99
Score = 59.1 bits (143), Expect = 6e-12
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 35 HIEGFLTHVVPTAPANVPE-MNHINDRYWCTDADDD--IKACGITCKALEDDDLTDDIAC 91
HI G+ T + + + IND+ +C + C I+C L DDDLTDDI C
Sbjct: 32 HISGYDTQAIVKNSDHKEYGLFQINDKDFCESSTTVQSRNICDISCDKLLDDDLTDDIMC 91
Query: 92 ARRIYRQH 99
++I
Sbjct: 92 VKKILDIK 99
>d1juga_ d.2.1.2 (A:) Lysozyme {Australian echidna (Tachyglossus
aculeatus) [TaxId: 9261]}
Length = 125
Score = 111 bits (279), Expect = 1e-31
Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 156 KTFRPCELAKVLLDNDISK---DDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQIN 212
K + EL K L+ ++ + W+C A +ES++N+ A H + DGS D+GI QIN
Sbjct: 1 KILKKQELCKNLVAQGMNGYQHITLPNWVCTAFHESSYNTRATNHNT-DGSTDYGILQIN 59
Query: 213 DRYWCTDADDDIK--ACGITCKALEDDDLTDDIACARRIYRQHK 254
RYWC D AC I+C L DDD+TDD+ CA++I + K
Sbjct: 60 SRYWCHDGKTPGSKNACNISCSKLLDDDITDDLKCAKKIAGEAK 103
Score = 58.3 bits (141), Expect = 1e-11
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 35 HIEGFLTHVVPTAPANVPE--MNHINDRYWCTDADDDIK--ACGITCKALEDDDLTDDIA 90
H + T + + IN RYWC D AC I+C L DDD+TDD+
Sbjct: 34 HESSYNTRATNHNTDGSTDYGILQINSRYWCHDGKTPGSKNACNISCSKLLDDDITDDLK 93
Query: 91 CARRIYRQHK 100
CA++I + K
Sbjct: 94 CAKKIAGEAK 103
>d1lmqa_ d.2.1.2 (A:) Lysozyme {Rainbow trout (Oncorhynchus mykiss)
[TaxId: 8022]}
Length = 129
Score = 111 bits (279), Expect = 1e-31
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 156 KTFRPCELAKVLLDNDI---SKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQIN 212
K + CELA+ L + + + + + W+C++++ES++N+ A + DGS D+GIFQIN
Sbjct: 1 KVYDRCELARALKASGMDGYAGNSLPNWVCLSKWESSYNTQATNRNT-DGSTDYGIFQIN 59
Query: 213 DRYWCTDADD--DIKACGITCKALEDDDLTDDIACARRIYRQHK 254
RYWC D CGI C L DDLT I CA+R+
Sbjct: 60 SRYWCDDGRTPGAKNVCGIRCSQLLTDDLTVAIRCAKRVVLDPN 103
Score = 57.6 bits (139), Expect = 3e-11
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 35 HIEGFLTHVVPTAPANVPE--MNHINDRYWCTDADD--DIKACGITCKALEDDDLTDDIA 90
+ T + + IN RYWC D CGI C L DDLT I
Sbjct: 34 WESSYNTQATNRNTDGSTDYGIFQINSRYWCDDGRTPGAKNVCGIRCSQLLTDDLTVAIR 93
Query: 91 CARRIYRQHK 100
CA+R+
Sbjct: 94 CAKRVVLDPN 103
>d1yroa1 d.2.1.2 (A:1-123) alpha-Lactalbumin {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 123
Score = 111 bits (279), Expect = 1e-31
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 158 FRPCELAKVLLDND-ISKDDIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDRYW 216
C+++ + D D + W C+ + S +++ AV + +GS ++G+FQI+DR+W
Sbjct: 3 LTKCKVSHAIKDIDGYQGISLLEWACVLFHTSGYDTQAVVN--DNGSTEYGLFQISDRFW 60
Query: 217 CTDADDD--IKACGITCKALEDDDLTDDIACARRIYRQH 253
C ++ CGI+C L DD+L DDIACA++I
Sbjct: 61 CKSSEFPESENICGISCDKLLDDELDDDIACAKKILAIK 99
Score = 58.3 bits (141), Expect = 1e-11
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 57 INDRYWCTDADDD--IKACGITCKALEDDDLTDDIACARRIYRQH 99
I+DR+WC ++ CGI+C L DD+L DDIACA++I
Sbjct: 55 ISDRFWCKSSEFPESENICGISCDKLLDDELDDDIACAKKILAIK 99
>d2vb1a1 d.2.1.2 (A:1-129) Lysozyme {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 129
Score = 111 bits (278), Expect = 2e-31
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 156 KTFRPCELAKVLLDNDISKD---DIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQIN 212
K F CELA + + + + W+C A++ES FN+ A + DGS D+GI QIN
Sbjct: 1 KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNT-DGSTDYGILQIN 59
Query: 213 DRYWCTDADD--DIKACGITCKALEDDDLTDDIACARRIYRQHK 254
R+WC D C I C AL D+T + CA++I
Sbjct: 60 SRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGN 103
Score = 58.8 bits (142), Expect = 1e-11
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 35 HIEGFLTHVVPTAPANVPE--MNHINDRYWCTDADD--DIKACGITCKALEDDDLTDDIA 90
F T + + IN R+WC D C I C AL D+T +
Sbjct: 34 FESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVN 93
Query: 91 CARRIYRQHK 100
CA++I
Sbjct: 94 CAKKIVSDGN 103
>d1xsfa1 d.2.1.8 (A:23-108) Probable resuscitation-promoting factor
RpfB {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 86
Score = 29.8 bits (67), Expect = 0.087
Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 18/84 (21%)
Query: 176 DIATWLCIARYESTFNSSAVGHMSGDGSLDHGIFQINDRYWCTDADDDIKACGITCKALE 235
D + W IA E+ N + G+ +G Q + W +A G A
Sbjct: 5 DGSIWDAIAGCEAGGNWAINT-----GNGYYGGVQFDQGTW--------EANGGLRYAPR 51
Query: 236 DDDLT--DDIACARRIYRQHKRQG 257
D T + IA A RQG
Sbjct: 52 ADLATREEQIAVAEVTR---LRQG 72
>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein
{Bacteroides fragilis [TaxId: 817]}
Length = 161
Score = 27.4 bits (60), Expect = 1.3
Identities = 17/129 (13%), Positives = 40/129 (31%), Gaps = 7/129 (5%)
Query: 126 YKPKPLPKKMIKSIAILFCVTNSFFSLARCKTFRPCELAKVLLDNDISKDDIATWLCIAR 185
P+PLP+ + S A T+ F + + + + N + D A
Sbjct: 12 PHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYEL---DPKFVGNARVEYDQMKAFEGAD 68
Query: 186 YESTFNSSAVGHMSGDGSLDHGIFQINDRYWCTDADDDIKACGITCKALEDDDLTDDIAC 245
+ N +A + L ++ + + + +TDD+
Sbjct: 69 FIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVR--RNMIVTDDVIE 126
Query: 246 ARR--IYRQ 252
+ + + +
Sbjct: 127 SPQSIVIPE 135
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.435
Gapped
Lambda K H
0.267 0.0598 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,050,159
Number of extensions: 49671
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 24
Length of query: 263
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 179
Effective length of database: 1,254,276
Effective search space: 224515404
Effective search space used: 224515404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.1 bits)