Query psy6913
Match_columns 380
No_of_seqs 128 out of 475
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 21:39:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6913.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6913hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iys_A Major capsid protein VP 8.9 1.4E+02 0.0047 28.7 2.0 10 50-59 194-203 (343)
2 3nxg_A Major capsid protein VP 8.8 1.1E+02 0.0036 28.7 1.1 23 50-75 178-200 (272)
3 4fmh_A VP1; viral capsid prote 7.6 1.2E+02 0.0041 28.6 0.9 22 51-75 196-217 (289)
4 1sva_1 Simian virus 40; virus 7.2 1.4E+02 0.0048 28.9 1.2 22 51-75 204-225 (361)
5 1vps_A Polyomavirus VP1 pentam 7.1 1.3E+02 0.0044 28.3 0.9 22 51-75 192-213 (289)
6 3s7v_A Major capsid protein VP 6.7 1.3E+02 0.0044 28.1 0.7 23 50-75 187-209 (277)
7 4a1x_C CP5-46-A peptide; hydro 5.5 1.7E+02 0.0057 17.3 0.4 8 50-57 16-23 (26)
8 1sid_A Polyomavirus coat prote 5.4 1.7E+02 0.0058 28.5 0.7 9 51-59 223-231 (383)
9 3bmz_A Putative uncharacterize 5.2 2E+02 0.007 25.1 1.0 19 52-70 18-37 (199)
10 3j0g_M E3 protein; alphavirus, 5.0 3.4E+02 0.011 19.6 1.8 21 351-371 31-51 (59)
No 1
>3iys_A Major capsid protein VP1; avian, polyomavirus, APV, icosahedral virus, virus; 11.30A {Budgerigar fledgling disease polyomavi}
Probab=8.86 E-value=1.4e+02 Score=28.75 Aligned_cols=10 Identities=30% Similarity=0.687 Sum_probs=8.2
Q ss_pred CCeeeecCCC
Q psy6913 50 DPIDCIVDEI 59 (380)
Q Consensus 50 ~PI~Cw~P~~ 59 (380)
=||+||+|+-
T Consensus 194 yPVE~W~PDP 203 (343)
T 3iys_A 194 YPIECWCPDP 203 (343)
T ss_pred cceEEECCCC
Confidence 3899999954
No 2
>3nxg_A Major capsid protein VP1; beta-sandwich jelly roll, viral protein; 1.95A {Jc polyomavirus} PDB: 3nxd_C 3bwr_A* 3bwq_A*
Probab=8.75 E-value=1.1e+02 Score=28.68 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=13.3
Q ss_pred CCeeeecCCCChhhhhhheeeeeeee
Q psy6913 50 DPIDCIVDEIPLNVMDTYCWIYSTFT 75 (380)
Q Consensus 50 ~PI~Cw~P~~~~~y~~~yCwi~~TY~ 75 (380)
=||+||+|+-+. |.-|-.-++|+
T Consensus 178 yPvE~W~pDPsk---NENtRYfG~~t 200 (272)
T 3nxg_A 178 YPVECWVPDPTR---NENTRYFGTLT 200 (272)
T ss_dssp SBGGGEEECTTS---CTTEEEEEEEE
T ss_pred cceEEECCCCCc---CcCceeEEEec
Confidence 389999995431 33344445554
No 3
>4fmh_A VP1; viral capsid protein, jelly roll, encapsidation, receptor BI sialylated oligosaccharides, viral protein; HET: SIA GAL; 1.85A {Merkel cell polyomavirus} PDB: 4fmg_A* 4fmi_A* 4fmj_A*
Probab=7.57 E-value=1.2e+02 Score=28.63 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=13.9
Q ss_pred CeeeecCCCChhhhhhheeeeeeee
Q psy6913 51 PIDCIVDEIPLNVMDTYCWIYSTFT 75 (380)
Q Consensus 51 PI~Cw~P~~~~~y~~~yCwi~~TY~ 75 (380)
||+||+|+-+ =|.-|-.-++|.
T Consensus 196 PVE~W~PDPs---rNENtRYFG~~t 217 (289)
T 4fmh_A 196 PIEVWCPDPS---KNENSRYYGSIQ 217 (289)
T ss_dssp BTTTEEECTT---SCTTEEEEEEEE
T ss_pred ceEEECCCCC---cCcCceeeeEec
Confidence 8999999543 234455556654
No 4
>1sva_1 Simian virus 40; virus coat protein, icosahedral virus; 3.10A {Simian virus 40} SCOP: b.121.6.1
Probab=7.21 E-value=1.4e+02 Score=28.92 Aligned_cols=22 Identities=23% Similarity=0.582 Sum_probs=13.6
Q ss_pred CeeeecCCCChhhhhhheeeeeeee
Q psy6913 51 PIDCIVDEIPLNVMDTYCWIYSTFT 75 (380)
Q Consensus 51 PI~Cw~P~~~~~y~~~yCwi~~TY~ 75 (380)
||+||+|+-+ =|.-|-.-++|+
T Consensus 204 PVE~W~pDPs---kNENtRYFG~~t 225 (361)
T 1sva_1 204 PVECWVPDPS---KNENTRYFGTYT 225 (361)
T ss_dssp BGGGEEECTT---TCTTEEEEEEEE
T ss_pred ceEEECCCCC---cCcCceeeEEec
Confidence 8999999543 133444455554
No 5
>1vps_A Polyomavirus VP1 pentamer; virus coat protein, oligosaccharide binding, virus assembly, acid, viral protein; HET: SIA GAL NAG; 1.90A {Murine polyomavirus} SCOP: b.121.6.1 PDB: 1vpn_A* 1cn3_A
Probab=7.10 E-value=1.3e+02 Score=28.30 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=12.8
Q ss_pred CeeeecCCCChhhhhhheeeeeeee
Q psy6913 51 PIDCIVDEIPLNVMDTYCWIYSTFT 75 (380)
Q Consensus 51 PI~Cw~P~~~~~y~~~yCwi~~TY~ 75 (380)
||+||+|+-+. |.-|-.-++|.
T Consensus 192 PVE~W~PDPsk---NENtRYFG~~t 213 (289)
T 1vps_A 192 PVEIWHPDPAK---NENTRYFGNYT 213 (289)
T ss_dssp BTTTEEECTTS---CTTEEEEEEEE
T ss_pred ceEeEcCCCCc---CcCceeeeeec
Confidence 89999995431 33344445543
No 6
>3s7v_A Major capsid protein VP1; jelly-roll, antiparallel beta sandwich, major capsid protein protein; 2.55A {Ki polyomavirus} PDB: 3s7x_A
Probab=6.71 E-value=1.3e+02 Score=28.13 Aligned_cols=23 Identities=4% Similarity=0.216 Sum_probs=13.2
Q ss_pred CCeeeecCCCChhhhhhheeeeeeee
Q psy6913 50 DPIDCIVDEIPLNVMDTYCWIYSTFT 75 (380)
Q Consensus 50 ~PI~Cw~P~~~~~y~~~yCwi~~TY~ 75 (380)
=||+||+|+-+. |.-|-.-++|.
T Consensus 187 yPVE~W~pDPsk---NENtRYFG~~t 209 (277)
T 3s7v_A 187 YSVESWAPDPSR---NDNCRYFGRVV 209 (277)
T ss_dssp CBTTTEEECTTS---CCSEEEEEEEE
T ss_pred CceEEECCCCCc---CcCceeeEEec
Confidence 389999995431 33344445553
No 7
>4a1x_C CP5-46-A peptide; hydrolase-peptide complex, unmodified inhibitory peptides; 1.90A {Synthetic construct} PDB: 4a1t_C
Probab=5.54 E-value=1.7e+02 Score=17.33 Aligned_cols=8 Identities=50% Similarity=1.046 Sum_probs=5.8
Q ss_pred CCeeeecC
Q psy6913 50 DPIDCIVD 57 (380)
Q Consensus 50 ~PI~Cw~P 57 (380)
+||+|-..
T Consensus 16 dpihcd~~ 23 (26)
T 4a1x_C 16 DPIHCDXX 23 (26)
T ss_pred Cceecccc
Confidence 78888643
No 8
>1sid_A Polyomavirus coat protein VP1; icosahedral virus; HET: SIA GAL BGC; 3.65A {Mouse polyomavirus} SCOP: b.121.6.1 PDB: 1sie_A*
Probab=5.38 E-value=1.7e+02 Score=28.53 Aligned_cols=9 Identities=11% Similarity=0.294 Sum_probs=7.8
Q ss_pred CeeeecCCC
Q psy6913 51 PIDCIVDEI 59 (380)
Q Consensus 51 PI~Cw~P~~ 59 (380)
||+||+|+-
T Consensus 223 PVE~W~PDP 231 (383)
T 1sid_A 223 PVEIWHPDP 231 (383)
T ss_dssp BTTTEEECC
T ss_pred ceEEECCCC
Confidence 899999954
No 9
>3bmz_A Putative uncharacterized protein; violacein, biosynthetic protein; HET: PG4 PGE; 1.21A {Chromobacterium violaceum} PDB: 2zf3_A 2zf4_A*
Probab=5.17 E-value=2e+02 Score=25.09 Aligned_cols=19 Identities=16% Similarity=0.445 Sum_probs=11.0
Q ss_pred eeeecC-CCChhhhhhheee
Q psy6913 52 IDCIVD-EIPLNVMDTYCWI 70 (380)
Q Consensus 52 I~Cw~P-~~~~~y~~~yCwi 70 (380)
|+-|.| +-+.+....|||.
T Consensus 18 iSYW~PMq~dD~iTSGYCWF 37 (199)
T 3bmz_A 18 VSYWSPMLPDDQLTSGYCWF 37 (199)
T ss_dssp EEEEESCCTTCCCEEEEEEE
T ss_pred hhhccCCCcccccccceeee
Confidence 778998 5544444444443
No 10
>3j0g_M E3 protein; alphavirus, bioweapon, VEEV; 4.80A {Venezuelan equine encephalitis virus}
Probab=5.00 E-value=3.4e+02 Score=19.64 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=17.3
Q ss_pred hhhhhhhcChhHHHHHHHHHH
Q psy6913 351 FNQVCKNVEPLIFREFVHDLA 371 (380)
Q Consensus 351 L~~i~~N~~~lv~~el~~~L~ 371 (380)
|+|++.|++.=-+-||++..-
T Consensus 31 L~mLe~Nvd~pgY~~LL~a~l 51 (59)
T 3j0g_M 31 LAMLSVNVDNPGYDELLEAAV 51 (59)
T ss_dssp HHHHHHTSSSTTHHHHHHHHH
T ss_pred HHHHHHhCCCccHHHHHHHHh
Confidence 789999999988888887653
Done!