Query psy6913
Match_columns 380
No_of_seqs 128 out of 475
Neff 6.0
Searched_HMMs 13730
Date Fri Aug 16 21:40:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6913.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6913hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vpsa_ b.121.6.1 (A:) Polyoma 11.5 32 0.0023 30.1 0.9 23 50-75 191-213 (285)
2 d1sva1_ b.121.6.1 (1:) Polyoma 10.6 40 0.0029 30.1 1.2 22 51-75 191-212 (348)
3 d1rxta1 d.108.1.2 (A:78-218) N 9.3 56 0.0041 25.8 1.5 28 5-32 15-42 (141)
4 d2shpa3 d.93.1.1 (A:111-218) T 8.6 68 0.005 22.9 1.8 31 330-360 6-36 (108)
5 d1d4ta_ d.93.1.1 (A:) The Xlp 8.1 39 0.0029 24.2 0.1 30 331-360 11-40 (104)
6 d1iyka1 d.108.1.2 (A:60-224) N 7.8 72 0.0053 25.8 1.6 28 5-32 37-64 (165)
7 d1gxqa_ a.4.6.1 (A:) PhoB {Esc 7.4 45 0.0033 24.2 0.1 26 348-373 36-62 (105)
8 d1pw4a_ f.38.1.1 (A:) Glycerol 6.8 1.1E+02 0.0078 25.9 2.5 19 101-119 15-33 (447)
9 d1i3za_ d.93.1.1 (A:) Ews/fli1 6.6 62 0.0045 23.3 0.6 31 331-361 10-40 (103)
10 d1jyra_ d.93.1.1 (A:) Growth f 6.6 52 0.0038 23.6 0.1 31 330-360 9-39 (96)
No 1
>d1vpsa_ b.121.6.1 (A:) Polyomavirus coat proteins {Murine polyomavirus, strain small-plaque 16 [TaxId: 10634]}
Probab=11.49 E-value=32 Score=30.08 Aligned_cols=23 Identities=9% Similarity=0.227 Sum_probs=14.1
Q ss_pred CCeeeecCCCChhhhhhheeeeeeee
Q psy6913 50 DPIDCIVDEIPLNVMDTYCWIYSTFT 75 (380)
Q Consensus 50 ~PI~Cw~P~~~~~y~~~yCwi~~TY~ 75 (380)
=||+||+|+-+ =|.-|-.-+||+
T Consensus 191 YpvE~W~PDPS---kNENtRYFG~yt 213 (285)
T d1vpsa_ 191 YPVEIWHPDPA---KNENTRYFGNYT 213 (285)
T ss_dssp SBTTTEEECTT---SCTTEEEEEEEE
T ss_pred eeeEeECCCCC---cCcCceeEEeec
Confidence 38999999543 133444455654
No 2
>d1sva1_ b.121.6.1 (1:) Polyomavirus coat proteins {Simian virus 40, Sv40 [TaxId: 10633]}
Probab=10.56 E-value=40 Score=30.14 Aligned_cols=22 Identities=23% Similarity=0.582 Sum_probs=14.0
Q ss_pred CeeeecCCCChhhhhhheeeeeeee
Q psy6913 51 PIDCIVDEIPLNVMDTYCWIYSTFT 75 (380)
Q Consensus 51 PI~Cw~P~~~~~y~~~yCwi~~TY~ 75 (380)
||+||+|+-+ =|.-|-.-+||+
T Consensus 191 pvE~W~PDPS---kNENtRYFG~yt 212 (348)
T d1sva1_ 191 PVECWVPDPS---KNENTRYFGTYT 212 (348)
T ss_dssp BGGGEEECTT---TCTTEEEEEEEE
T ss_pred eeeeECCCCC---cCcCceeeeeec
Confidence 8999999543 233455556664
No 3
>d1rxta1 d.108.1.2 (A:78-218) N-myristoyl transferase, NMT {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.29 E-value=56 Score=25.81 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=23.1
Q ss_pred hHHHHhhhcccccccccceeeeehhhhH
Q psy6913 5 FSSLRSLLKLDQIAIDNTVFRLHYKVTV 32 (380)
Q Consensus 5 ~~~l~~~~~~~~~~~Dd~vdRL~y~~Tv 32 (380)
+..+..+|+-+.+.+||..+|++|.--.
T Consensus 15 ~~el~~lL~~nYVeddd~~frf~Ys~ef 42 (141)
T d1rxta1 15 LKELYTLLNENYVEDDDNMFRFDYSPEF 42 (141)
T ss_dssp HHHHHHHHHTSSCCCCSSCCCBCCCHHH
T ss_pred HHHHHHHHHHhcccCCCceEEEEeCHHH
Confidence 5667788888999999999999987543
No 4
>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.58 E-value=68 Score=22.88 Aligned_cols=31 Identities=6% Similarity=-0.054 Sum_probs=21.8
Q ss_pred cCCchhHHHhhhccCCCcEEehhhhhhhcCh
Q psy6913 330 FSFPNDIEAVSRAFSIGDWFVFNQVCKNVEP 360 (380)
Q Consensus 330 ~~~~~~~~~~~~~l~~d~~FlL~~i~~N~~~ 360 (380)
.+++++.++.+++.+.||-||+|--....|.
T Consensus 6 ~i~R~~Ae~lL~~~~~~G~FLVR~S~~~~g~ 36 (108)
T d2shpa3 6 HLSGKEAEKLLTEKGKHGSFLVRESQSHPGD 36 (108)
T ss_dssp SCCHHHHHHHHHHTCCTTEEEEEECSSSTTC
T ss_pred CCCHHHHHHHHhhcCCCCeEEEEecCCCCCC
Confidence 4567777887776667899999875544443
No 5
>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.12 E-value=39 Score=24.17 Aligned_cols=30 Identities=7% Similarity=-0.092 Sum_probs=19.7
Q ss_pred CCchhHHHhhhccCCCcEEehhhhhhhcCh
Q psy6913 331 SFPNDIEAVSRAFSIGDWFVFNQVCKNVEP 360 (380)
Q Consensus 331 ~~~~~~~~~~~~l~~d~~FlL~~i~~N~~~ 360 (380)
+++++.+..+++-+.||-||+|--..+.|.
T Consensus 11 isR~eAe~lL~~~~~~G~FLVR~S~~~~g~ 40 (104)
T d1d4ta_ 11 ISRETGEKLLLATGLDGSYLLRDSESVPGV 40 (104)
T ss_dssp CCHHHHHHHHHHHCCTTEEEEEECSSSTTC
T ss_pred CCHHHHHHHHhhCCCCCeEEEEecCCCCCC
Confidence 456677776766567888888865544443
No 6
>d1iyka1 d.108.1.2 (A:60-224) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]}
Probab=7.76 E-value=72 Score=25.78 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=22.9
Q ss_pred hHHHHhhhcccccccccceeeeehhhhH
Q psy6913 5 FSSLRSLLKLDQIAIDNTVFRLHYKVTV 32 (380)
Q Consensus 5 ~~~l~~~~~~~~~~~Dd~vdRL~y~~Tv 32 (380)
+..+..+|+-+.+.+||..+|.+|.--.
T Consensus 37 l~ely~lL~~nYVeDdd~~frf~YS~ef 64 (165)
T d1iyka1 37 LDELYKLLYDNYVEDIDATFRFKYSHEF 64 (165)
T ss_dssp HHHHHHHHHHHSCBCTTSSEEECCCHHH
T ss_pred HHHHHHHHHhhcccCccceEEEecCHHH
Confidence 4567788888899999999999987543
No 7
>d1gxqa_ a.4.6.1 (A:) PhoB {Escherichia coli [TaxId: 562]}
Probab=7.41 E-value=45 Score=24.19 Aligned_cols=26 Identities=8% Similarity=0.144 Sum_probs=21.0
Q ss_pred EEehhhhhhhcChhHHH-HHHHHHHHH
Q psy6913 348 WFVFNQVCKNVEPLIFR-EFVHDLAKR 373 (380)
Q Consensus 348 ~FlL~~i~~N~~~lv~~-el~~~L~~~ 373 (380)
.-+|.++..|.|.++.+ +|++.+|..
T Consensus 36 ~~lL~~L~~~~g~vvsr~~L~~~vw~~ 62 (105)
T d1gxqa_ 36 FKLLHFFMTHPERVYSREQLLNHVWGT 62 (105)
T ss_dssp HHHHHHHHHSCSSEECHHHHHHHHTCS
T ss_pred HHHHHHHHhCccccccHHHHhccccCC
Confidence 34899999999998885 588899953
No 8
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.77 E-value=1.1e+02 Score=25.92 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=13.3
Q ss_pred cceeeehhhhHHHHHHHHH
Q psy6913 101 QIKYHKYYQWVCFALFFQA 119 (380)
Q Consensus 101 ~~~~i~YYQWVPfiL~lQA 119 (380)
.++..+.|+|.-+++++-+
T Consensus 15 ~~~~~~~~~w~i~~~~~~~ 33 (447)
T d1pw4a_ 15 IDPTYRRLRWQIFLGIFFG 33 (447)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhHHHHHHHHHHHH
Confidence 4455678999988766544
No 9
>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.63 E-value=62 Score=23.30 Aligned_cols=31 Identities=13% Similarity=0.020 Sum_probs=20.7
Q ss_pred CCchhHHHhhhccCCCcEEehhhhhhhcChh
Q psy6913 331 SFPNDIEAVSRAFSIGDWFVFNQVCKNVEPL 361 (380)
Q Consensus 331 ~~~~~~~~~~~~l~~d~~FlL~~i~~N~~~l 361 (380)
+++.+.|..+.+-+.||.||+|--..+.|..
T Consensus 10 isR~~AE~lL~~~~~~G~FLVR~S~~~~g~~ 40 (103)
T d1i3za_ 10 LTKRECEALLLKGGVDGNFLIRDSESVPGAL 40 (103)
T ss_dssp CCHHHHHHHHHTTCSTTEEEEEECSSSTTCE
T ss_pred CCHHHHHHHHHhCCCCCeEEEEecCCCCCCE
Confidence 4556666666555678999998766665543
No 10
>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.62 E-value=52 Score=23.61 Aligned_cols=31 Identities=6% Similarity=-0.126 Sum_probs=21.4
Q ss_pred cCCchhHHHhhhccCCCcEEehhhhhhhcCh
Q psy6913 330 FSFPNDIEAVSRAFSIGDWFVFNQVCKNVEP 360 (380)
Q Consensus 330 ~~~~~~~~~~~~~l~~d~~FlL~~i~~N~~~ 360 (380)
.+++.+.++.+.+-+.||.||+|--..+.|.
T Consensus 9 ~isR~~Ae~lL~~~~~~G~FLvR~S~~~~g~ 39 (96)
T d1jyra_ 9 KIPRAKAEEMLSKQRHDGAFLIRESESAPGD 39 (96)
T ss_dssp SCCHHHHHHHHHTCCSTTBEEEEECSSSTTC
T ss_pred CCCHHHHHHHHhhCCCCCeEEEEecCCCCCC
Confidence 3466677777766667889998876555554
Done!