RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6913
         (380 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 39.1 bits (90), Expect = 0.002
 Identities = 46/298 (15%), Positives = 86/298 (28%), Gaps = 92/298 (30%)

Query: 9   RSLLKLDQIAIDNTV--FRLHYKVTVV---ILVTFSLIVTSRQYI--------------- 48
             LL L  +        F L  K+ +      VT  L   +  +I               
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 49  ---GDPIDCIVDEIPLNVMDTY----------------CWIYSTFTLPNKLNGRVGK--D 87
                 +DC   ++P  V+ T                  W        +KL   +    +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364

Query: 88  VLQPGVASHVEGDQIKYHKYYQWVCFALFFQAMLFYIPR----YLWKIWEGGRIRMIVQE 143
           VL+P            Y K +     ++F  +   +IP      +W       + ++V +
Sbjct: 365 VLEPAE----------YRKMFD--RLSVFPPSA--HIPTILLSLIWFDVIKSDVMVVVNK 410

Query: 144 LN--CPIIVGGKQGT--------------KEMEEKRKMIVD-------YFHNNLHLQEF- 179
           L+    +    K+ T              +      + IVD       +  ++L      
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470

Query: 180 -YAYRFI-----LCEVLNLVNVIAQIYFMDY-FLDGEFSNYGMEVWNFSEQDPDTRTD 230
            Y Y  I       E    + +   ++  D+ FL+ +  +     WN S    +T   
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFL-DFRFLEQKIRHDST-AWNASGSILNTLQQ 526


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.3 bits (67), Expect = 0.54
 Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 6/27 (22%)

Query: 3  QVFSSLRSLLKL---DQ---IAIDNTV 23
          Q    L++ LKL   D    +AI  T+
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATM 46


>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide
           acetyltransferase; 2-oxoacid dehydrogenases
           acyltransferase; 2.50A {Listeria monocytogenes}
          Length = 256

 Score = 27.6 bits (62), Expect = 5.8
 Identities = 6/18 (33%), Positives = 8/18 (44%)

Query: 91  PGVASHVEGDQIKYHKYY 108
           P + S   GD+I  H   
Sbjct: 92  PQLNSTWAGDKIIEHANI 109


>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein,
           metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP:
           c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A*
           2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A
           2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ...
          Length = 329

 Score = 27.8 bits (61), Expect = 6.1
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 7/72 (9%)

Query: 133 EGGRIRMIVQELNCPIIVGGKQGTKEMEEKRKMIVDYFHN-----NLHLQEFYAYRFILC 187
           EG  I  + Q    P+++    G+      R+ I+           L +  F +      
Sbjct: 26  EGTSISEMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFLSQTPY-- 83

Query: 188 EVLNLVNVIAQI 199
              +  N+I+ +
Sbjct: 84  GYRSFSNIISTL 95


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.329    0.143    0.458 

Gapped
Lambda     K      H
   0.267   0.0463    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,101,676
Number of extensions: 366769
Number of successful extensions: 814
Number of sequences better than 10.0: 1
Number of HSP's gapped: 814
Number of HSP's successfully gapped: 8
Length of query: 380
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 285
Effective length of database: 4,049,298
Effective search space: 1154049930
Effective search space used: 1154049930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.8 bits)