RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6913
         (380 letters)



>d2o3ia1 e.73.1.1 (A:2-390) Hypothetical protein CV3147
           {Chromobacterium violaceum [TaxId: 536]}
          Length = 389

 Score = 29.2 bits (65), Expect = 0.84
 Identities = 20/118 (16%), Positives = 32/118 (27%), Gaps = 17/118 (14%)

Query: 230 DPMARVFPKLTKCTFHKYGPSGSVQKFDGLCVLPLNIVNEK-IYIVLWFWFWILVVISVH 288
           D   R  P L   T+   G   +          P  +  E  + + L             
Sbjct: 131 DGAGRAVPSLPMLTYAAAGVPPT----------PAFLAGESGLCVELGVRMPPPDGQRRE 180

Query: 289 STSMVHQDLFRIVTTVCQLVYRVATIMMPNVRTKILRARCKFSFPNDIEAVSRAFSIG 346
             S V + + R + T  Q        M      ++  A            +SRA  +G
Sbjct: 181 DISTVVEQMLRPILTNPQFGQFGGLAMWMMSPAQLGGA---LPVRG---TLSRALKLG 232


>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle
           domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 75

 Score = 25.8 bits (57), Expect = 2.4
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 150 VGGKQGTKEMEEKRKMIVDYFHNN 173
           +  +Q  + +E KRK I+++   N
Sbjct: 7   ITAEQRREMLEAKRKQIINFISRN 30


>g1y43.1 b.29.1.20 (A:1-32,B:3-173) Aspergillopepsin II {Aspergillus
           niger [TaxId: 5061]}
          Length = 203

 Score = 27.5 bits (61), Expect = 2.5
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 16/62 (25%)

Query: 65  DTYCWIYSTFTLPNKLNGR--------VGKD-------VLQPGVASHVEGDQIKYHKYYQ 109
           D Y  +   FT+P  ++          VG D       +LQ GV    E  Q  Y  +Y+
Sbjct: 15  DGYTKVTGEFTVP-SVSAGEEYCASAWVGIDGDTCETAILQTGVDFCYEDGQTSYDAWYE 73

Query: 110 WV 111
           W 
Sbjct: 74  WY 75


>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM
           {Escherichia coli [TaxId: 562]}
          Length = 164

 Score = 26.5 bits (57), Expect = 4.0
 Identities = 7/93 (7%), Positives = 22/93 (23%)

Query: 92  GVASHVEGDQIKYHKYYQWVCFALFFQAMLFYIPRYLWKIWEGGRIRMIVQELNCPIIVG 151
           G  S      +   + ++                 ++          +         +  
Sbjct: 31  GAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCV 90

Query: 152 GKQGTKEMEEKRKMIVDYFHNNLHLQEFYAYRF 184
            K   + + +  +++       L L   +  RF
Sbjct: 91  DKPLAENLRDAERLVELAARKKLTLMVGFNRRF 123


>d1a5ta1 a.80.1.1 (A:208-330) delta prime subunit {Escherichia coli
           [TaxId: 562]}
          Length = 123

 Score = 25.9 bits (57), Expect = 5.0
 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 250 SGSVQKFDGLCVLPLNIVNEKIYIVL-WFWFWILVVISVHS--TSMVHQDLFRIVTTVCQ 306
           + SV   D   +L   + +E+    L W    ++  +  H     + + D+  +V  +  
Sbjct: 14  AYSVPSGDWYSLLAA-LNHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELAN 72


>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha
           subunit, C-terminal domain {Propionibacterium
           freudenreichii, subsp. shermanii [TaxId: 1744]}
          Length = 168

 Score = 25.7 bits (56), Expect = 6.8
 Identities = 7/31 (22%), Positives = 12/31 (38%)

Query: 138 RMIVQELNCPIIVGGKQGTKEMEEKRKMIVD 168
              +   +  I VGG    ++ +E RK    
Sbjct: 112 LDKLGRPDILITVGGVIPEQDFDELRKDGAV 142


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.143    0.458 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,540,979
Number of extensions: 74261
Number of successful extensions: 209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 9
Length of query: 380
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 293
Effective length of database: 1,213,086
Effective search space: 355434198
Effective search space used: 355434198
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.8 bits)