BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6915
         (127 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ED7|A Chain A, Solution Structure Of The First Fibronectin Type Iii
          Domain Of Human Netrin Receptor Dcc
          Length = 119

 Score = 28.9 bits (63), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 11 GDGRSYMLNLHTPGDFDVTWGDMFTYALYT 40
          GD R   LN   PG   +T G++   A+YT
Sbjct: 59 GDNRERALNTTQPGSLQLTVGNLKPEAMYT 88


>pdb|2LRO|A Chain A, Solution Structure, Dynamics And Binding Studies Of
           Ctcbm11
 pdb|2LRP|A Chain A, Solution Structure, Dynamics And Binding Studies Of
           Ctcbm11
          Length = 172

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 46  WQITKIPFSKFF--LQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLE 94
           W+  +IPFS F   L  +   QD+   LD D I SI     +  +G F ++
Sbjct: 113 WKTIEIPFSSFRRRLDYQPPGQDMSGTLDLDNIDSIHFMYANNKSGKFVVD 163


>pdb|1V0A|A Chain A, Family 11 Carbohydrate-Binding Module Of Cellulosomal
           Cellulase Lic26a-Cel5e Of Clostridium Thermocellum
          Length = 178

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 46  WQITKIPFSKFF--LQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLE 94
           W+  +IPFS F   L  +   QD    LD D I SI     +  +G F ++
Sbjct: 113 WKTIEIPFSSFRRRLDYQPPGQDXSGTLDLDNIDSIHFXYANNKSGKFVVD 163


>pdb|2JIH|A Chain A, Crystal Structure Of Human Adamts-1 Catalytic Domain And
           Cysteine-rich Domain (complex-form)
 pdb|2JIH|B Chain B, Crystal Structure Of Human Adamts-1 Catalytic Domain And
           Cysteine-rich Domain (complex-form)
 pdb|2V4B|A Chain A, Crystal Structure Of Human Adamts-1 Catalytic Domain And
           Cysteine-Rich Domain (Apo-Form)
 pdb|2V4B|B Chain B, Crystal Structure Of Human Adamts-1 Catalytic Domain And
           Cysteine-Rich Domain (Apo-Form)
          Length = 300

 Score = 26.9 bits (58), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 80  GLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAY 112
           G  L+D+   P QL  D  G  YD N   +F +
Sbjct: 208 GECLMDKPQNPIQLPGDLPGTSYDANRQCQFTF 240


>pdb|1A99|A Chain A, Putrescine Receptor (Potf) From E. Coli
 pdb|1A99|B Chain B, Putrescine Receptor (Potf) From E. Coli
 pdb|1A99|C Chain C, Putrescine Receptor (Potf) From E. Coli
 pdb|1A99|D Chain D, Putrescine Receptor (Potf) From E. Coli
          Length = 344

 Score = 26.9 bits (58), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 67  IQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTE 108
           I  P + +++ S G+S +D     F   L+Y+G   DPN T+
Sbjct: 137 ILKPENLEKLKSCGVSFLDAPEEVFATVLNYLG--KDPNSTK 176


>pdb|3Q2G|A Chain A, Adamts1 In Complex With A Novel N-Hydroxyformamide
           Inhibitors
 pdb|3Q2G|B Chain B, Adamts1 In Complex With A Novel N-Hydroxyformamide
           Inhibitors
 pdb|3Q2H|A Chain A, Adamts1 In Complex With N-Hydroxyformamide Inhibitors Of
           Adam-Ts4
 pdb|3Q2H|B Chain B, Adamts1 In Complex With N-Hydroxyformamide Inhibitors Of
           Adam-Ts4
          Length = 297

 Score = 26.9 bits (58), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 80  GLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAY 112
           G  L+D+   P QL  D  G  YD N   +F +
Sbjct: 205 GECLMDKPQNPIQLPGDLPGTSYDANRQCQFTF 237


>pdb|2LLG|A Chain A, Nmr Structure Of The Protein Np_814968.1 From Enterococcus
           Faecalis
          Length = 143

 Score = 25.8 bits (55), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 23/118 (19%)

Query: 12  DGRSYMLNLHTPGDFDVTWGDMFTYALY--TRGGPYWQITKIPFSKFFLQSK---GRIQD 66
           DGR  +  LH   D+    G    Y L+  T      Q  ++    F   S+   G+ Q+
Sbjct: 21  DGRLALTALHKGKDY---QGKPMFYVLFELTNTTEKTQNIQLMIQSFMEVSQTVHGKAQN 77

Query: 67  IQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENEVRGI 124
           +Q  + TD               PFQ +LD +  E +P  T + AY  Y F NE + +
Sbjct: 78  LQYAVLTD--------------SPFQDKLDRLADEINPGETIQGAYP-YEFINENKPV 120


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.143    0.458 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,466,095
Number of Sequences: 62578
Number of extensions: 191630
Number of successful extensions: 293
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 10
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)